LOCUS       DASSIK010000001         4043 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_983093, whole genome shotgun sequence.
ACCESSION   DASSIK010000001 DASSIK010000000
VERSION     DASSIK010000001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4043
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_983093"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..735
                     /locus_tag="VFI64_00005"
     CDS             <1..735
                     /locus_tag="VFI64_00005"
                     /inference="COORDINATES: protein motif:HMM:NF012509.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241698.1"
                     /translation="RISINGKLVSDAVVSNKVLDEYLKLANKSLHISVSHETRIPIGY
                     GLGTSGAGALSLSYALNDALCTKLSLDQAAQIAHCSEIYCNTGLGTVISEYTGGLELR
                     TRAGAPGIGTAEKIPLENKSVVALCLGPMYTANCLKTQNDVFTMKALDFLKQLLKSRS
                     VDDFLRLSHKFAVNIGAINAKCAALAELLKSKGYDCSVALFGETIFTVVSDNEIESIL
                     QILNDQSGHCIVSNVDNFGAKLLTNK"
     gene            737..1483
                     /locus_tag="VFI64_00010"
     CDS             737..1483
                     /locus_tag="VFI64_00010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopantothenate/pantothenate synthetase"
                     /protein_id="HET7241699.1"
                     /translation="MTNRIPLKHPRYLSLKTREKLVDGLKNGLVVTHGLIAHGRGEAF
                     DYLLGEHTSQNALCAEKVASCLLLISKTPVISVNGNAAALCSKEIVKLSKLTNASIEV
                     NLFHQNQRRSEVIAKTLIKDGATEVLGVNSKSKFAMKEISSGRRFVDKSGILNADTVF
                     LAIEDGDRTEVLTSLGKTVISVDLNPLSRTAQSSHVTIVDNIIRAIPNMIDFATKFAK
                     KEISELSALVSEFDNKWNLVQSTKLIRHGL"
     gene            1485..2381
                     /gene="panB"
                     /locus_tag="VFI64_00015"
     CDS             1485..2381
                     /gene="panB"
                     /locus_tag="VFI64_00015"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003864 - 3-methyl-2-oxobutanoate
                     hydroxymethyltransferase activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HET7241700.1"
                     /translation="MSSNDKIDINNQVPILTKLTVNDILRKKNEGRRIAMITAYDYCM
                     SRICDYAGIDIILVGDSAATVMLGYKNTRKTTMEEMLVFCRAVSNGTKRALIVGDMPF
                     GSYQTGMDNAVINAVRFMRTGCDAVKLEGGVEVVSIVKRLTEMGIPVMGHIGLKPQTT
                     SLTRGFDSHGATVEEAVKLIEESKALEEAGAFAIVLEKVASEVSKIITNHSRIPIIGI
                     GSGPMIDGQVLVLHDLLGLYNEFNPKFIKRYLELSKLISKAITQYCSEVREGIFPNEG
                     HTYHMQKGENEKLQKKVGRQQN"
     gene            2383..3690
                     /gene="coaBC"
                     /locus_tag="VFI64_00020"
     CDS             2383..3690
                     /gene="coaBC"
                     /locus_tag="VFI64_00020"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004632 - phosphopantothenate--cysteine
                     ligase activity [Evidence IEA];
                     GO_function: GO:0004633 - phosphopantothenoylcysteine
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0015939 - pantothenate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HET7241701.1"
                     /translation="MSSKGIRTIKSGDGGHPSKEIVGSESQLLRSKRIVLCITGSVAA
                     YRAIDLSRLLMRHGAEVYPVMTTTTSSKFLTEEMMRWATGNKVVTTLTSDLEHIDLAD
                     YDKSDMVIVYPCTANTIGKFVNGIDDTSVTSVLSVAFGSRIAILIAPAMHRSMYENEI
                     IRNNIHRLKSFGVFFVEPTMVENKAKVPSPNEVLDRVFEIFSYNIVHSDKKILVTAGS
                     TLERIDPVRVLTNLSSGKMGISIAEIAAKQGMEVTLIYGHGEVSPPSLPNINTIRIES
                     AAEMYEKIKFEILKNDPHIMFHCAAVSDFTLSHPAGQKIDSHKRSLNLEMTPTKKIID
                     EVKKWKRELILVAFKAEFDVSVESLVERAYKKLKKCNADFIVANDLDRTGCGFGSDTN
                     EVYIIDKKKKILHLPIQRKEHIAAKLVELVIDEHRKRLDNQLG"
BASE COUNT         1328 a          672 c          873 g         1170 t
ORIGIN      
        1 agaatatcaa ttaatggaaa attggtcagc gatgcagtag tttcgaacaa agtgttagat
       61 gaatacctaa agcttgcaaa taagtcattg catatttcag taagtcatga aactcgcatt
      121 ccaataggat atggtcttgg cacgagtggt gccggcgctc taagcctctc atatgcactt
      181 aatgatgctc tctgtaccaa gctttctcta gatcaagctg ctcagattgc tcattgttct
      241 gaaatatact gcaatacagg cctaggtacg gtcatttctg aatatacagg tgggcttgaa
      301 ttacggactc gagctggtgc gcccggaata ggaaccgctg aaaaaattcc tttagaaaat
      361 aaatcggttg tcgcattatg tttggggccg atgtatactg ccaattgctt aaagacacaa
      421 aatgatgtct ttacgatgaa agctttggat tttttaaaac aacttttgaa atccagatca
      481 gtcgatgatt ttcttcgatt gtcacacaag tttgcagtta atatcggagc tatcaatgca
      541 aaatgcgcgg ctctagccga attattgaaa agtaaaggtt atgattgcag cgtggcattg
      601 tttggcgaaa ctatattcac agttgtatca gataacgaaa tcgaatccat attgcaaata
      661 ctcaacgatc aatctggaca ctgtattgtt tcgaacgtgg ataattttgg cgccaaattg
      721 ttaacaaata aatgacttga caaacagaat acctttaaaa catccaagat acttgtctct
      781 caagacaaga gaaaagctgg ttgacgggtt aaaaaatgga ttggtagtta ctcacggact
      841 tattgctcat ggaagaggtg aagcttttga ttatctttta ggagaacaca caagtcagaa
      901 cgcactgtgt gcagaaaaag ttgcttcttg tttgttgttg atatccaaga ctcctgtcat
      961 atcagtaaac ggaaacgcag ctgcgctctg tagcaaagag attgtaaaat tgagcaaact
     1021 tactaatgca tctattgagg ttaacttatt tcaccaaaac cagaggagat ctgaggtcat
     1081 cgccaaaacg ttgatcaaag atggtgcaac cgaagttttg ggagtaaact cgaaatcgaa
     1141 atttgctatg aaagaaatct caagtggcag gagattcgtg gataaaagtg gaattttgaa
     1201 tgctgatact gtatttcttg caatcgaaga tggagacaga acggaagtgc ttacttctct
     1261 tggaaagact gtgatttctg ttgatttaaa tccgctatcc agaactgcgc aatcatctca
     1321 tgttaccata gtcgataaca taatccgggc cattccaaat atgattgatt ttgcaacaaa
     1381 atttgcaaag aaagaaatat cagaattatc tgcactcgtg tcggaatttg ataataagtg
     1441 gaatctagta cagtcaacca aattaattag gcatggattg taaaatgtcg tcaaatgaca
     1501 agatagatat caacaatcaa gtacctattt tgacgaaact tacggtcaat gatatattaa
     1561 ggaaaaaaaa tgaggggcgt aggattgcaa tgattacagc ctacgactat tgtatgtcaa
     1621 ggatttgtga ctatgcaggc attgacatta ttttggttgg agacagtgct gccactgtca
     1681 tgcttggcta caaaaacaca agaaagacaa ctatggaaga aatgttggta ttctgcaggg
     1741 cagtaagtaa tggaacaaaa agagctctta ttgttggaga tatgcctttt ggatcttatc
     1801 aaactggaat ggacaatgct gttatcaatg cggtcaggtt tatgcgtact ggctgtgatg
     1861 ctgtaaaact cgaaggaggt gttgaggttg tatcaatagt taaaagattg acagaaatgg
     1921 ggattcctgt aatgggtcac ataggtttga aacctcagac aacctcatta actcgtgggt
     1981 ttgattcgca tggagcaacg gtagaggaag cagtcaaact tatagaagaa tccaaagctt
     2041 tggaagaagc tggagccttt gcaatagttc tcgaaaaagt agcaagcgag gtatctaaaa
     2101 tcattacaaa tcacagtcgc attccaataa tcggtatagg ttcaggacca atgatcgatg
     2161 gacaggtttt ggtgctgcat gatttgctcg ggctttacaa tgaattcaac cccaagttta
     2221 tcaagagata tttagagcta tcgaaattga ttagcaaggc cattacacaa tactgttctg
     2281 aagtcagaga gggaattttt cccaatgaag gtcacactta tcatatgcaa aagggagaga
     2341 atgaaaaact tcaaaaaaag gtaggtcgtc aacaaaacta acttgtcaag caaaggcatc
     2401 agaactatca aaagtggtga tggaggtcat ccatcaaagg agatagtagg atctgaaagt
     2461 cagttgcttc gttcgaaaag gattgttcta tgcatcacag ggagtgtagc tgcctatcgt
     2521 gcaattgatt tgagtaggtt attgatgcgt catggtgctg aagtttatcc agtaatgacg
     2581 actacaacta gttcgaaatt tttaactgaa gaaatgatgc gctgggctac gggtaataag
     2641 gttgttacca cccttactag cgatttagaa catattgact tagctgatta tgacaagtcc
     2701 gatatggtga ttgtatatcc ttgtaccgct aatacaatcg gaaaatttgt gaatgggatt
     2761 gatgacactt ctgttacctc ggtactgagt gtcgcgttcg gatctcgtat tgcaattttg
     2821 attgcccctg cgatgcatcg atcaatgtat gaaaatgaaa tcattcgcaa taatatacac
     2881 agattaaaat ctttcggggt tttctttgtt gagcctacga tggttgagaa taaggcaaaa
     2941 gttcctagtc caaatgaggt attggaccga gtatttgaga tcttcagtta caatatcgtg
     3001 cattcggaca aaaagatact tgttactgct ggatcgacct tggagagaat tgatcctgtc
     3061 agagttttaa ctaatttgag ctcgggaaaa atgggaataa gcattgctga aatagcggct
     3121 aaacagggta tggaagtgac acttatttac ggccatggtg aagtctcacc tccttcgtta
     3181 ccaaatataa ataccatcag aattgaatca gccgctgaaa tgtatgagaa aataaaattt
     3241 gaaatattga aaaatgaccc ccatataatg tttcattgtg cggcggtatc tgatttcacg
     3301 ttaagtcatc cagcaggtca aaagattgat agccataaac gcagtttgaa tcttgaaatg
     3361 acacctacca aaaagattat tgatgaggtc aagaaatgga agagagaact aattcttgtt
     3421 gcctttaagg cagaatttga tgtgtcagta gagtcacttg ttgagcgagc gtataagaaa
     3481 ttaaaaaaat gcaacgctga ttttattgtt gcgaatgacc tcgatcgaac aggttgtggc
     3541 tttggatctg atactaacga agtttatatc attgacaaaa agaaaaagat tcttcacttg
     3601 cccattcaga gaaaagaaca cattgctgct aaattagttg aattggttat cgatgaacac
     3661 aggaagcgtc ttgataacca actgggatag gatacactca taaaattagt gagcatcact
     3721 aaattgaacc actgtcagta atatcgtcca aatcacaatt aaatgttaag ttgaatcgac
     3781 agccagagag taggggcttg ttagcaagcc aattgcttat agacctcagc attagattaa
     3841 tccatagtaa agtaaaaaat attcacctaa tttcgtggaa ttttagggtt taaggttcga
     3901 ttctataatt gtaagcacat tgttagcaat tacattactt taatagcgaa aagactttct
     3961 tgattgctag ccaaaggatt ctaatttcgg taattcgtaa tacgatgttt attcataatc
     4021 aatttgttag tataaggact aac
//
LOCUS       DASSIK010000002         2711 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_233, whole genome shotgun sequence.
ACCESSION   DASSIK010000002 DASSIK010000000
VERSION     DASSIK010000002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2711)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2711)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2711
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_233"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..681
                     /locus_tag="VFI64_00025"
     CDS             <1..681
                     /locus_tag="VFI64_00025"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HET7241702.1"
                     /translation="PEAISFYFGAYALDLIGFGKSDKPTSLSYNILEFVEFLREFIRK
                     ELIEFGEIILVGHSLGGYIACEFVIKYPTLVKKLVLVDSSGMLDKPTPLLAEYLDVAM
                     NPSYDRVMSVFRKMLGNPLFVSPIVAEIFINNISNEPAKNAFRMTLENSANTQIRPER
                     LQKIKIPTLIIWGVEDRVIPMEHAEIFRKNIVGSKLVKIERAGHAPFVEKPSVVFDLI
                     RRFLVDSP"
     gene            complement(951..1667)
                     /locus_tag="VFI64_00030"
     CDS             complement(951..1667)
                     /locus_tag="VFI64_00030"
                     /inference="COORDINATES: protein motif:HMM:NF021214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase assembly protein"
                     /protein_id="HET7241703.1"
                     /translation="MASGPPRLQSRTPLKSCLYVFALGSLIIISFQDTVLISLESDLG
                     NHMILEHALFFLIGYLGIKTSETILKILFAKIKNNNIDDDAKGTTWQQTLMKRWTGIV
                     RFLFAINKSPFLPLVSVIILLIFWHVPTVFDYAVFDGKVHVLQHLSFILVGMLLFLCT
                     RQLGESLTLYLLISSVGMMILSGLVLALANGRIYVPYTISSHNVAGEYMFAMSIALAV
                     ICLPVYLIRRTLLHIRTITK"
     gene            complement(1754..>2711)
                     /locus_tag="VFI64_00035"
     CDS             complement(1754..>2711)
                     /locus_tag="VFI64_00035"
                     /inference="COORDINATES: protein motif:HMM:NF012343.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HET7241704.1"
                     /translation="VGIFVNAVALLSGTVGLFTQLGMGFGYLLNPDFQPNWLLAKDAF
                     WFFGHPIVYFTLFSFLAAAYYYIPKFTKKTVPYDKWAYRSWPFYFIFAVLVFSHHSYM
                     DMPNPVFVQTVATIASQAVIFPSGLTVMTIMMYLLRSKIRWNISSFFIVTGIAGWVYG
                     GFTGAQTGWWGTDVYLHNTLNVVGHIHLVILMGSVLLGIGLVYGVIADLTKKRLGKTL
                     GMVHLLTTITGGFGLAFMFTYLGLFGVIRREAIIPDQFMWAMPWLLFFALTVGFGQIT
                     FAYNLFKTLGRKTTTEEQLFVTNQEERALSEKDLIHTGESST"
BASE COUNT          914 a          541 c          494 g          762 t
ORIGIN      
        1 cccgaagcta tatcatttta ctttggtgcc tatgcgttag atcttattgg ctttggaaaa
       61 agtgacaaac ctacatcgct aagttacaat atactcgaat tcgtagaatt ccttcgagaa
      121 tttattcgaa aggaattgat agaattcggc gagattattc tggtaggaca ttcacttggc
      181 ggatacatcg catgcgagtt tgtaattaaa tatcctacac tagtcaaaaa attggtacta
      241 gtagattcat cagggatgct tgacaaacca acgccgttat tggcagaata tctggatgtc
      301 gccatgaatc cctcctatga tagagttatg tccgtattta gaaagatgct tggtaatccg
      361 ctatttgttt ccccaatagt agctgagata ttcataaata atatttcaaa tgaacctgcc
      421 aaaaatgcat ttagaatgac cctcgagaat agtgctaata ctcagatccg tcctgaaaga
      481 cttcaaaaaa taaagatacc cacacttata atttggggag ttgaggatag ggtaattccg
      541 atggaacacg cagaaatatt taggaagaat atagttggtt caaaacttgt gaaaatagaa
      601 cgtgcaggtc atgctccatt tgttgaaaag ccttcagttg tatttgatct tattaggaga
      661 ttcttagttg acagtccgta aattattact cattacctta gagcaaaaat tggaattagg
      721 caataccaac tagtaacaaa gtctaatcca tactattctg ccacgaatcc acaaaaaaag
      781 tattttacgt ttattttccc agtgtccaat catcaaacag acagagtcca gcctggattg
      841 gcattttctg tcataaagtt cgtgccactc gatttgggct atgtaatagc tcctatattg
      901 attgtctgtc taatttatct catgtatttg acatgtattt gacatcaact ctatttcgtt
      961 atagtgcgaa tatggagaag agtcctacgt atcaaataaa ctggcaaaca aattacagcc
     1021 aaagcaatag acatcgcaaa catatactct cctgcaacgt tgtggctgga gattgtgtat
     1081 ggaacgtaaa tccttccgtt ggcaagagcc aataccaacc ccgacaatat catcatacct
     1141 actgacgata taagaagata caaggttagt gactctccaa gctgtcgtgt acaaaggaac
     1201 aataacatgc caactaggat aaacgataag tgttgtaaaa cgtggacttt accatcaaat
     1261 actgcataat caaatacagt gggaacatgc caaaaaatca ataaaataat tacagaaaca
     1321 agtggtagga atggactctt gtttatcgca aatagaaacc taactatccc tgtccagcgt
     1381 ttcattaaag tctgttgcca agttgtacct tttgcatcat catcaatgtt gttatttttt
     1441 atttttgcaa agagaatctt aagaatggtc tctgaggttt ttattcccag ataccctatc
     1501 aaaaagaaca aagcatgttc tagaatcatg tgatttccaa gatcagactc caatgagatg
     1561 agaactgtgt cttggaatga aatgataatt aaactaccaa gagcaaatac gtacaagcat
     1621 gacttcaaag gagttcgaga ttgaagtcta ggaggaccgc tagccatctg cactataaga
     1681 ttgattcaaa atatttaacg ctattctata atcaagtgtg agaatgtgca cattacccaa
     1741 caaaggtagg tagctaagta gacgactctc cagtgtgaat aagatccttc tcgctcaatg
     1801 ctctctcttc ttgatttgtg acaaacaatt gttcttctgt tgttgttttt cttcctaaag
     1861 tcttgaacaa attgtaagca aacgttatct gcccgaatcc aaccgtgagc gcgaagaata
     1921 ataaccatgg catagcccac atgaattggt ctggtattat ggcctccctt cttatcacac
     1981 caaaaagacc aagatacgtg aacataaaag ccagtccaaa tccacccgta attgtagtaa
     2041 ggagatgaac cattccaaga gttttaccca atctcttttt tgtcaaatct gctattactc
     2101 cgtacacaag tccgattcct aggagaacac ttcccattag gataacaaga tgaatatgac
     2161 caacgacatt tagtgtattg tgcaaatata catcagttcc ccaccagccc gtttgtgcgc
     2221 ctgtaaagcc accataaacc catcctgcga tcccggtaac gatgaaaaaa gatgaaatgt
     2281 tccagcggat cttagatcgc aataaataca tcattatggt catcactgtt aaaccagaag
     2341 ggaaaataac ggcttgactc gctatagttg ccactgtttg aacaaacacg gggtttggca
     2401 tatccatata ggaatggtgg gaaaatacta atactgcaaa aataaaataa aatggccatg
     2461 agcgataagc ccacttatca tatggaactg tcttcttagt aaactttgga atatagtagt
     2521 aagctgcggc taaaaaggaa aataatgtaa aatacactat cggatgacca aagaaccaaa
     2581 aagcatcctt cgcaaggagc caattgggtt gaaagtcagg atttagaaga tacccaaatc
     2641 ccattcccaa ctgagtaaac agacccacag tcccgctaag aagagctact gcattaacaa
     2701 atatccctac c
//
LOCUS       DASSIK010000003         2331 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_688398, whole genome shotgun sequence.
ACCESSION   DASSIK010000003 DASSIK010000000
VERSION     DASSIK010000003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2331)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2331)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2331
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_688398"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(244..1281)
                     /locus_tag="VFI64_00040"
     CDS             complement(244..1281)
                     /locus_tag="VFI64_00040"
                     /inference="COORDINATES: protein motif:HMM:TIGR01297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HET7241705.1"
                     /translation="MDESLGPESDPNDTHIRKRRNFDPSIINEGIVAGQRIAKISVIT
                     LIGIGIAELLVGHISGSVVATADGIDSMSDAMISFIVLLGLRIAQRPPDTKFHFGYHK
                     VETLAAMLAAIGMIVIGSIILYHSYESFIHPKDINHPLITMIVLAIASAISLYRAFQM
                     RVIANKYQILSLKTDAKNSIKDGSASVIGFFSILVATQFGILQADAIGGMIIAGYIFS
                     VAYISLKQSSLILVDAWHSPKMTELIKKIIEEKFGYDQISIRSVLLRSAGMITQAEVH
                     VEVDGNKQLKDIELLSVEIQSAIRSEIPTMERISVIPHSFSERPETRMARLFRNRIRN
                     KKQLADSGQKY"
     gene            complement(1893..2165)
                     /locus_tag="VFI64_00045"
     CDS             complement(1893..2165)
                     /locus_tag="VFI64_00045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241706.1"
                     /translation="MKRTKGISNKEFYLRTKRLLQVGLVKRRKGSFLLTNFATVVFHG
                     QLVIESGIKNYWKLKAVDSIQATGGTAEHERNMLIKTKTIIELRIF"
BASE COUNT          728 a          455 c          400 g          748 t
ORIGIN      
        1 aatttctaat aacaagttac atatagtatg ggaagataat accctgggaa atcacgaaat
       61 atattacaaa tccatgtatg ggaattatct ggctagccct acatcatgaa attagaaata
      121 gacctggaga atacaggact aagcgcacta agcacttcaa tctaccaaag gaataattct
      181 aattacgatc aatgaataaa gtaccgacta ctgtaacttg aatatactac cttgcaggtc
      241 aatttagtac ttctgtccac tgtctgctaa ttgtttttta tttctaattc tattcctgaa
      301 gagtctagcc attctagttt caggccgctc ggagaaggaa tgcggaataa ctgaaatcct
      361 ttccattgtt ggaatttcag agcgaatagc actttgtatt tccacagaca acaattctat
      421 atcttttaat tgtttattgc catcaacttc tacatgaacc tcagcctgag taatcattcc
      481 agctgaacgt aacaatactg acctgatgct tatctgatcg tatccaaatt tctcttcaat
      541 tatcttcttt attagttcag tcatttttgg actgtgccaa gcgtcaacaa gaattagcga
      601 tgattgtttc aatgatatgt aagcaacaga gaatatatat cccgcaatta tcattcctcc
      661 aattgcgtct gcctgtagga taccaaattg tgttgcaact aaaatactga agaatcctat
      721 cacagaagct gagccgtcct tgatggagtt ttttgcatca gtcttcaaag ataatatctg
      781 atacttgttg gcaatgaccc gcatttgaaa tgctctatac aaggatatgg cacttgctat
      841 tgccaaaact atcattgtga ttagtggatg gttaatgtcc ttggggtgaa taaaggattc
      901 ataggaatga tacaagatta ttgaccctat tactatcatt cctatagcag cgagcattgc
      961 tgccaaagtt tcaaccttgt gataaccaaa atgaaacttt gtgtctggtg ggcgctgggc
     1021 aattcgcaga ccaagaagaa ctatgaagga aatcattgca tcagacatgg agtcgatacc
     1081 atccgcggtc gcaacgacac taccacttat gtgaccaacg agcaattcag ctataccaat
     1141 accgattagt gttatgacgg agatctttgc tatcctctga cccgcaacta taccttcatt
     1201 aattatagag ggatcaaagt ttctcctttt ccgaatatga gtatcatttg ggtctgactc
     1261 agggcctagg gactcatcca atcttaaaat taattattaa tacagatcga tcttatttaa
     1321 gggttaaaat aagattgtca agcataaaat gatccaatga atcaaatttc atagtagagt
     1381 taacgatgct ttcccatcac caagaaaagc atgaaaagtt atacttaact atctgcaatt
     1441 aatttttgtc atttaactaa atcggcctta tgtataattg agaaggtgcc attagaaaat
     1501 gttatataac aatggaagta tatatcttat gtaacaaata tgataagtga cctgcgttgt
     1561 gaatcttgta agaagccaac acattccctt aacttttggt ttgacaagct gttgtgtaag
     1621 tcttgctaca acattaatag atcgagcccg cagacaatct tagtaagcaa tctgcaagac
     1681 taaatttagt cataatcgta gtaagttaat gtaggctgct agatgttgaa aaaagataat
     1741 gttcggagtg gaaaatacca tattttgtcc caccatcatg acgaaattgc ttgctgaccc
     1801 aatctgtgga tagatgttgt atcactctct ctttttccta gcaggctata tgatggacgg
     1861 ccaagatttt tccataaact aaccttgttt aactaaaata ttctcaattc tattatcgtt
     1921 ttagtcttta tcagcatgtt gcgttcatgc tctgctgttc ctcctgttgc ctgaatggaa
     1981 tcaactgctt tgagcttcca ataattcttt atacccgact cgatgacgag ctgaccatga
     2041 aatacaactg ttgcaaagtt tgtaagcagg aaagatccct ttctcctttt tactaatcct
     2101 acttgcaaca atcgcttggt tcttagataa aactccttat tgctaattcc ttttgttctc
     2161 ttcaacactt aactttccac tattattggc aatagcacaa aacatattga gtgacttgat
     2221 atcagaaatt gattggaagt atgtctatca ccgaatgtcc ttccattccg ttaccatgaa
     2281 ttcctagtca atattagcta tatttagaca ctttagcgta gctaggagaa a
//
LOCUS       DASSIK010000004         2942 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1180135, whole genome shotgun sequence.
ACCESSION   DASSIK010000004 DASSIK010000000
VERSION     DASSIK010000004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2942)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2942)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2942
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1180135"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(352..726)
                     /locus_tag="VFI64_00050"
     CDS             complement(352..726)
                     /locus_tag="VFI64_00050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241707.1"
                     /translation="MLSTSLSRPASAIGLQDNVKEQTGLTNTELQPDNADPFKSKDLK
                     EKVNLANISSLDKHKDSKDKNPSTKVRNDQCDKDKTCSDTPKVLDKEISSDNKETDQK
                     VTSSSEGKDKNHFELPIDIPFP"
     gene            complement(1074..1631)
                     /locus_tag="VFI64_00055"
     CDS             complement(1074..1631)
                     /locus_tag="VFI64_00055"
                     /inference="COORDINATES: protein motif:HMM:NF012573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005509 - calcium ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HET7241708.1"
                     /translation="MLPKMIVVVSLFALVVVLTIIPVTSVSGIGNRCPTVWQRSEGVH
                     LCIGTDLNDHIDGSKAPDIVIGLAGDDLLRGGPDSDVLQAGFDDDKVYGNSGDDNMQG
                     GPGLDQLYGDSGDDIIFGGFDDDFLVAGDGNDEMYGGDGDDVLQGGPGADYFDCGGGF
                     DIVIGFDPQKGDTNANNCEDVIQQL"
     gene            complement(1791..2786)
                     /locus_tag="VFI64_00060"
     CDS             complement(1791..2786)
                     /locus_tag="VFI64_00060"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HET7241709.1"
                     /translation="MKYRKLGKSGIDVSEIGFGAWTIGLDWWGRKIDDEEATKLLKRA
                     YDLGITFFDTADMYGKGRSEKLIGKTFKGMRNEIVYSTKWGYDFYNVEQVGHNELPQL
                     HDSTFINLSLGHSLERLQTDYVDVYSLHNPKMPALENLDLFSSLEKLMKDGTIRSHGV
                     ALGPAIGWENEGMLAIRERSITCLQTVYNILEQDPGNTFLKEAEKYNVGVMTRVPDAS
                     GVLTGKVNENTVFDKNDHRNSRKREWIIGALGKVQKLKYIADEKGWDVTELAIKFILS
                     QKQVSVVLPTITSMEELENFASFSDGNYLNSTDLKRISDMYANNFHVNAVQPSQL"
BASE COUNT          826 a          633 c          484 g          999 t
ORIGIN      
        1 gagatcctct aaaggtcaat tatttaattt ccttaagtac ggaattataa aggttatctt
       61 gcttgaaatt tttgtcattt tataagatgt tgtgtaacga tttatgccct catggaaaat
      121 cttaatcata aatgaagcct gtctattgca ttctaaattg gagaaacatg gtctatggaa
      181 tactactaat ctgtagatcc cacatcggtt ttgatatcct tttcggaagt cgaaattaac
      241 acctacttcc ggtcattaat catttcgaaa gatccatgtt tacattttag ctcccataaa
      301 atcactcaat tctaatattg tattttgttt ccgatcatgg ggtttacatg tctagggaaa
      361 tggtatatcg attggcagtt caaaatggtt cttatctttc ccttcgctac tgctcgtaac
      421 tttttgatcg gtctccttgt tgtcagaact tatctctttg tccaatactt taggggtatc
      481 ggaacatgtt ttatctttgt cacactgatc atttctgact ttggtcgaag gatttttgtc
      541 cttactgtcc ttatgtttat ctaaagatga aatatttgca aggttcactt tctcctttaa
      601 atccttggac ttgaagggat cagcattatc cggttgtaac tcggtgttgg ttaggccagt
      661 ttgttctttt acattatctt gtagtcctat tgcgctggca gggcgagata gagaagtaga
      721 tagcacagaa aaaagaatca aactattgac tatgaaaact aatacaattc taatacacaa
      781 tatgctatcg ctactcacaa gactagaatg gctatgagta tatttggatt cagtaatgta
      841 ctgctatatc atgacttagg tacaatagaa aggaacttaa ttacggtatc ttggtagtgc
      901 gtatatttct ataacctctt gtaatattca gtgaatcaca ttccacacca tttgtaaaag
      961 tggattattt gcaccgtcat tagtgaatat gtcaattcgg ctttcaatca aactgaaaaa
     1021 aaagatttgt cagattatgt acgatgctat ggacatctat tttctaatca ttcttaaagt
     1081 tgttgaatca catcttcaca attgttagca ttggtatctc ctttctgggg gtcaaagcct
     1141 ataactatgt cgaaaccgcc tccgcagtca aagtagtctg ctccaggccc gccctgtaaa
     1201 acatcatcac catctcctcc atacatttca tcgttgccgt ccccggctac taggaagtca
     1261 tcgtcaaacc ccccaaatat aatatcgtct ccactatcgc catacaactg atccaggcct
     1321 ggacctccct gcatgttatc atctccagaa ttgccatata ccttgtcgtc atcaaatcct
     1381 gcttgcagaa cgtcactatc agggcctcct cttaacaagt catcgcctgc tagacctatg
     1441 actatatcgg gtgctttgct tccatcaata tggtcattca aatctgtccc tatgcacaaa
     1501 tgaacacctt cggacctttg ccaaacagtt gggcatctat ttcctatacc gcttacgcta
     1561 gttactggaa ttattgtgag aaccacgact aaagcaaaca acgaaactac tacaatcatt
     1621 ttcggtaaca tacacttcaa ataaatatga aggggttaat aacagctgtg agtcaaattt
     1681 cctaataatg tttcataaca ccgttctcat ctttcaaact gggtagaata agttaacctg
     1741 gcgggctttc acaattattg aactttgaag aagtacttct accagttgta ctataactgg
     1801 cttggttgaa cagcattaac gtggaaatta tttgcataca tatcagaaat gcgtttgaga
     1861 tctgtgctgt tcagataatt cccatctgaa aagctggcaa agttttctaa ttcctccatg
     1921 ctggtgatgg tgggcaaaac aactgaaacc tgcttttgag aaagaatgaa ctttatagca
     1981 agctcggtta catcccaacc tttttcatca gcgatatact tcaatttttg aacttttcct
     2041 agcgctccaa taatccattc tctttttcta ctattgcggt ggtcattctt gtcgaatact
     2101 gtattctcgt taactttgcc tgtaagaacc ccggatgcat caggaactcg tgtcatcact
     2161 cctacattat atttttcagc ttccttcaaa aaggtgttgc ctggatcttg ttcgagaata
     2221 ttatatacag tttggagaca ggtaatgctt ctttctctaa tcgctaacat tccctcattt
     2281 tcccagccta tcgctggacc aagagctacg ccatgacttc taatcgttcc atctttcatg
     2341 agcttttcta gtgaagagaa gagatctaga ttttctaaag ctggcatctt gggattgtga
     2401 agactataaa catctacata atcagtttga aggcgttcta gactgtgccc aagtgaaagg
     2461 ttaataaaag ttgaatcatg taactgcggt aattcgttgt gaccaacttg ttcgacatta
     2521 taaaaatcgt atccccattt tgttgaatag actatttcat ttctcatacc tttgaatgtc
     2581 ttgcctatca gtttctcgct tcttcccttc ccatacatat ctgcagtatc aaagaatgta
     2641 atacctaaat cataggccct ctttagcagc ttcgttgctt cttcgtcatc tatctttctt
     2701 ccccaccaat ctagacctat agtccaggcg ccaaatccta tttcactaac atcaattcca
     2761 cttttcccaa gttttctata tttcatttat ctgcaaacct cattaatatc gtctgtaatg
     2821 ctcttaaatt gagaatcaat gatgactggt ttcagcgatt ctaatttatt gatatcccca
     2881 ttattctcaa gaaatcttac atactcaggc atttctatgt taatccatga tttgcagcca
     2941 ga
//
LOCUS       DASSIK010000005         9754 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_983843, whole genome shotgun sequence.
ACCESSION   DASSIK010000005 DASSIK010000000
VERSION     DASSIK010000005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 9754)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9754)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9754
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_983843"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..656)
                     /locus_tag="VFI64_00065"
     CDS             complement(<1..656)
                     /locus_tag="VFI64_00065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HET7241710.1"
                     /translation="MQITENRVRISEIFTSIEGEGIFVGTKTMFVRLAGCHLKCRWCD
                     TGYALPFNSGKEYSIEEAKELIENQIQPFTYKVNFTGGEPLLQYEALIPIADFVKNRK
                     GLKTYIESSCFDSFRFSKVLEYFDICKIEFKTPDSGVTEEISYQELLLNEFKCLELAK
                     EHNKTTYIKVVITNSTEIAIFKVLVNNIFAKIEPSNISGFVIQPSHGIDEPELEKLLN
                     "
     gene            complement(637..1362)
                     /locus_tag="VFI64_00070"
     CDS             complement(637..1362)
                     /locus_tag="VFI64_00070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase"
                     /protein_id="HET7241711.1"
                     /translation="MQKTKNEIAICIMSGGPDSLCVAAYLKNCKNYEIKTLAFSYGQR
                     AMREIRIAEKFSKMLNAEEHQTINMNFMKKLYGDSNALTNENTRLAENFNYNIVVPIR
                     NAIFITIAAAWAISCNARLIAYGAHSEDMHYPDCRPEFIKSIAKSLNLAEEDRIKLGL
                     KEKISIWSPSLVGMSKSQLLKTGYEILGDLVFKSWSCYSNGLKIRGKGIVHCGKCESC
                     INRKTAFSNAGIKDKTFYANNRK"
     gene            complement(1349..1918)
                     /locus_tag="VFI64_00075"
     CDS             complement(1349..1918)
                     /locus_tag="VFI64_00075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241712.1"
                     /translation="MSGDQDVQIKRSFGFLFIAIAIAIIFAAVLSQFLSLDKVPYYYY
                     PLLWLASFGASLGITLYKRRKMLAAVRARMKKSLGWPLHIKIINGLSWAGPFAAISVF
                     HQLYPYLILLGIGLGNMSTYYLIKTYSRNSNKEQLIVGLIAICSIPISIILDNTIFSA
                     SYELALLFSRLLIAISYGMGGVYALIAKD"
     gene            complement(2300..2698)
                     /locus_tag="VFI64_00080"
     CDS             complement(2300..2698)
                     /locus_tag="VFI64_00080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HET7241713.1"
                     /translation="MKIFNGRAATEEYMSTHSLTFSTPEMTLKKFALWLGDQVTLKGN
                     NDQVPRLMVFLKELNDDKSDKTEFMPDIDDSFKPSGAVTEMYGKGSQNTPNALPAVQP
                     ETISKSCIQCTHLLKIDSRFCPKCGSKQTP"
     gene            complement(2729..3271)
                     /locus_tag="VFI64_00085"
     CDS             complement(2729..3271)
                     /locus_tag="VFI64_00085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HET7241714.1"
                     /translation="MSFNVDALGGLAEKLKQLVNETQEHYEALVEDSELYKKGKISER
                     EFFGKIGDYLISSSALNFLAVRVILELKSAMAKGSSIQSPTGASGPTASSSYAPSGSG
                     GGFGIAGFIGGEGKSSPADQYIMPETEQSAPTFKPVDMTIKRDRTNHENSNTRTKNCT
                     TCGAQIPNQSKFCNKCGNTQ"
     gene            3435..3509
                     /locus_tag="VFI64_00090"
     tRNA            3435..3509
                     /locus_tag="VFI64_00090"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3470..3472,aa:Val,seq:tac)
     gene            complement(3721..5187)
                     /gene="glnA"
                     /locus_tag="VFI64_00095"
     CDS             complement(3721..5187)
                     /gene="glnA"
                     /locus_tag="VFI64_00095"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HET7241715.1"
                     /translation="MPYRVVDGRIESLSYTNQEVLQRLEGDGIKFLDLQFTGLFGRFH
                     HTTIASNMFRKEDFEDGLPKLDGSSIKGFTEIHESDLIIRPDSSTYAIVPWIREYPTA
                     RLICDILSGGKTRGPYPKDPRGIAKKAEKYVKEQGYDISYWGPEVEFFVFDKLAVDTL
                     TPSHGQSYEITSREAPWSTDNVGYALRLKEGYLPSAPGDTLMQYRNECVDVLSSKFGI
                     ICDAHHHEVATAGQCEIDIRYDSLVNAADSVQSYKYIVKNIAKEHNMIATMMPKPISL
                     DNGSGMHVNVSLWNGGRNLFYDASDEYAEMSENARYFGGGIIDHAKALAAIVDPTTNS
                     YRRLVPGYEAPVYIAWSTGNRSAIIRIPAHYKGKKFANMKRIEFRAPDPSCNPYLAFS
                     AIVAAGLDGIKKKKSIGDPVDADIFKMTEYRRQELGIQQLPASLREACQELQNDSIFL
                     EPIFGKEVIASIVEHAKNEHMELAIRPHPHEFAMYADV"
     gene            5372..5983
                     /locus_tag="VFI64_00100"
     CDS             5372..5983
                     /locus_tag="VFI64_00100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241716.1"
                     /translation="MDSNRESETMDLSFVTDLLVKEVQIPPLQQIPPDTYKTIAKFIR
                     IESLRSYESIESKIRDELIRLIALATKLLIEIRCQKLAGYKVNEGTLLPHALATEEYS
                     KLTEEEKYILEGNLDAFRKKESILIASSQGREKMLKTISKLVHSKKIIVRFLKPVEQF
                     MGVDMTRYGPFVEEDVAILPFENARSLLETGTATEIQDDVPAK"
     gene            6033..6329
                     /locus_tag="VFI64_00105"
     CDS             6033..6329
                     /locus_tag="VFI64_00105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241717.1"
                     /translation="MPHNGIDIDQFVLLTIYPTAVFFVIGLLGKKGKICDTLKYTLQG
                     FACIVFSIVYFIAIPHGGAQGLAIILTMFGLLLLFMARKQMIQPAASQDRTRTS"
     gene            complement(6447..7499)
                     /locus_tag="VFI64_00110"
     CDS             complement(6447..7499)
                     /locus_tag="VFI64_00110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241718.1"
                     /translation="MANNNNNSNEIIIPSVEELLNRAFEELRISEIKIRKDALGIMKK
                     VFDNTANPTDLWLDIMKAIVMSCETNHYSFSKSELCDFLTIGAKGLDFSKEGQISNAG
                     GQPPTRLIDDAILSIYRDIMENYDNSNETLKSNYPKLVLNIASIVHKGTDLNGERVGV
                     YGLERYYQRNKSSAVDKILSLPVILDNQSHSITKEDDSVPEKERTEIIRKSKSESHTK
                     AHRKEMTNSLSVLTQRKKKELDELLMKIPDQDYKKIADLCINYSKLQKYSKLVGTKEF
                     SPEIERELGRKLTDRQLQHATISIRKVKIYIENVLDGKFLPHGSHGINHVKHNLEYGY
                     QLMGLIKYRRRKHEPT"
     gene            complement(7674..8219)
                     /locus_tag="VFI64_00115"
     CDS             complement(7674..8219)
                     /locus_tag="VFI64_00115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241719.1"
                     /translation="MQSSSRTIIHRPSGMTAGLTAAWAIFGLFLAIDSELGLAPGTLY
                     KMVGLAFGIQSPYAVYIGFTLFMITAVIIGIIYSTISKHVKIFYINSLVKGLGTGILA
                     GVIVWLVLFLPINFAVMQPTLQKILSTSPPTSEDYLFAKQLLTLSDTMLFGSLALHIV
                     FGGVMGFCARLAVANASVIHD"
     gene            complement(8498..9304)
                     /locus_tag="VFI64_00120"
     CDS             complement(8498..9304)
                     /locus_tag="VFI64_00120"
                     /inference="COORDINATES: protein motif:HMM:NF013183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-binding protein"
                     /protein_id="HET7241720.1"
                     /translation="MSEVEILCIGSELLSGITLNTNAHWIGKKITKLGAKVRRVIVVA
                     DDLEEIDFALNDSLERKPDWIVTCGGLGPTYDDMTIQAVARSLKRKLILDPIALQMVK
                     NSYKRLGQNVRLNSARLKMAMIPQESKPIYNPVGNAQAVHIFTKKTQIVCLPGVPSEM
                     KAIFTHSILGNIKQQIGQFAVEERNYHVEGVGEATLSRTLIKLVRSFPRHALYLKTHP
                     QGYKKNKIPVMKVQIVSKGKKKEYVQEILEKVSNVILSEVKKHGGRIKLE"
BASE COUNT         2841 a         1919 c         1741 g         3253 t
ORIGIN      
        1 aaattcaata atttttctaa ttcgggctca tctataccat gactgggttg aatcacaaat
       61 cctgatatat tcgagggttc gattttggca aaaatgttat tgaccaagac tttgaagata
      121 gcgatttccg ttgaattagt gatgaccacc tttatataag tagttttatt gtgttctttt
      181 gctaattcta agcatttaaa ctcgttgagt aacaattcct gataactaat ctcttctgtc
      241 acgcctgagt ctggagtctt aaactcgatc ttgcaaatat cgaaatattc aagtactttt
      301 gaaaatcgga aagaatcaaa gcatgatgat tcgatatatg tttttaatcc ttttctattc
      361 ttgacaaagt cagcaatagg tataagggct tcgtactgaa gtaatggttc cccgcccgta
      421 aagttaacct tgtatgtaaa aggttgtatc tggttttcta tcaattcttt ggcctcttct
      481 atagagtatt cctttccact attgaagggc aaggcgtagc cagtatcaca ccagcggcac
      541 tttaaatgac agccggcgag tcggacaaac atcgtctttg ttccaacaaa gatgccctct
      601 ccttctatac tagtaaatat ttcactaatt cttaccctat tttctgttat ttgcataaaa
      661 tgttttatcc tttatacctg cattgctgaa tgcagttttc ctatttatac acgattcgca
      721 tttaccacaa tgaactattc cttttccgcg aatttttaag ccattagaat aacaactcca
      781 tgatttaaag actagatcgc ccagtatttc ataacccgtt tttagcagct gggatttact
      841 cattcccacc aatgagggag accaaataga gattttttcc tttagcccta acttgatcct
      901 gtcttcttca gcaagattca aagatttcgc aattgactta ataaattctg gtctgcagtc
      961 tggatagtgc atgtcctcag aatgtgcacc ataggctatc aatcttgcat tacagctaat
     1021 agcccatgca gctgctattg tgataaaaat tgcgtttctt ataggaacaa cgatattata
     1081 attgaaattt tctgctagcc gtgtgttttc atttgttagg gcgttagaat ctccatacag
     1141 cttcttcata aaattcatgt ttatagtttg atgctcttca gcattcagca tttttgaaaa
     1201 tttttctgct atcctaattt cacgcattgc tctttgtcca taagagaatg ccagagtctt
     1261 aatttcatag ttcttgcaat tcttaaggta cgctgcaacg cagagagaat ctggtcctcc
     1321 actcataata cagatcgcaa tttcattttt agtcttttgc aattaaagca taaacacctc
     1381 ccatgccgta cgatatcgct attaataacc tagagaaaag tagcgcaagc tcataacttg
     1441 ccgaaaaaat agtattgtcg agaattattg aaatgggaat gctgcagata gcgatcaacc
     1501 cgactatgag ctgttccttg ttactgtttc tactatatgt cttgattaag taatatgtag
     1561 acatattccc cagtcctatt cccaagagaa tcaaataagg atagagttga tgaaagactg
     1621 agatggcagc gaatggtcca gcccaagata gaccatttat aattttgata tgaagaggcc
     1681 agcctagact ctttttcatt cttgctctca ctgctgctag catcttcctc ctcttgtaga
     1741 gagttattcc caagcttgca ccaaaactgg ctagccaaag aagcggatag taatagtatg
     1801 gcactttatc caatgataaa aattgactaa ggacagcagc gaatattata gcgattgcaa
     1861 tagctataaa gaggaatcca aagctacgtt tgatttggac atcttgatcc cctgacacta
     1921 atgagcaaaa acttaatttc tttaatttaa agtatttcac agaccttctt ttttttatgg
     1981 gcgtcttttg caataaataa atgtaaattg taatgctaga ggacaaacaa cttttgatta
     2041 aaagcatatg gttcaacagc ggattaatgg aatcttcaaa ggaatgcaag aatatacagt
     2101 tggtggtgac agatcaggac ttggcggtcc ataaaatcaa ttaatcttaa taatatcgcg
     2161 acgtctaaaa gagtatgcgc acttgtacct cttgcagaat ggtcaagttc cattctataa
     2221 attttatatt ttcatccacg atttgtaacg aatgttttat gcttatttca gaatcaaagg
     2281 gccagaaaga ataatcagtt tacggtgtct gttttgatcc acatttagga caaaatctgg
     2341 agtctatttt caggagatga gtgcattgga tacatgattt ggaaatggtt tccggttgta
     2401 cagctggtaa agcattagga gtattctgtg atcccttacc atacatttct gtcactgcgc
     2461 cgctaggttt aaacgaatca tcgatgtcgg gcataaattc agtcttgtca gatttatcat
     2521 cattcaattc cttaagaaat accatcaatc gtggaacctg atcattattt cctttcaggg
     2581 tgacttggtc acctaaccaa agcgcaaatt tcttcaacgt catctcaggg gtagaaaacg
     2641 tgagagagtg agttgacatg tattcttccg tagcagctct tccattaaag atcttcatca
     2701 agtggttata tgtagtccgc agttttaatt attgcgtatt tccacattta ttgcaaaact
     2761 ttgattgatt tggaatttga gctccgcatg tcgtgcaatt ctttgttcga gtgttgctat
     2821 tctcatggtt tgtccgatcc cgtttgatcg tcatatctac gggtttgaat gtgggtgcac
     2881 tttgttcagt ttcgggcata atatactggt cggctggtga agacttaccc tcaccaccta
     2941 taaatcctgc aatgccaaaa ccaccgccgg acccagatgg agcgtatgag gaggaagcag
     3001 taggaccact agcaccagta ggactttgaa ttgatgagcc ttttgccatc gctgacttca
     3061 attccagaat gactcttact gctaagaaat ttaatgcaga tgatgaaatg aggtaatcgc
     3121 ctatcttgcc aaagaattcc ctttcactaa tctttccttt tttgtagagt tcactatcct
     3181 cgaccaatgc ctcataatgc tcttgagttt cgttgaccaa ttgttttaac ttttctgcca
     3241 atccgcccaa ggcatctaca ttaaatgaca tcaatactga ttctgtctta cgggtctaat
     3301 aaaagtttga acgaagatta tccacggcag ctaaacctca caagagtcaa tgtaattact
     3361 ttctttggaa acactcattt tcgaatcaaa aaacctatta atatcgatat gttggatgtg
     3421 acgtcaatca gactggaggg gttgtctagc ctggttagga tacctgcctt acacgcaggt
     3481 ggtcatgggt tcaaatccca tcccctccat gctatttgag atgatgattc ttgagtccat
     3541 tccattcaat agataaaagg taacagggta ttaacaaatt gttgaaacta acttacgaag
     3601 tatttgacag cccatgatca atttttgctt accgcttgca ttctaaccta accgctacct
     3661 atttttcata ctcacaatca tacatagccc agtaatctga ttatgttcct gtattactca
     3721 tcatacatca gcgtacattg caaattcatg tggatgtggt cttatggcca gttccatatg
     3781 ctcattcttt gcatgttcaa caatactggc aatcacttcc ttaccaaata ttggttccag
     3841 aaaaattgaa tcgttctgta attcttgaca tgcttctctt aaacttgcag gaagctgctg
     3901 gatgccaagc tcttgcctcc tgtattctgt catcttgaag atatccgcat caaccggatc
     3961 acctatagat tttttcttct ttataccatc aagtcctgcc gctacgatag ccgaaaaggc
     4021 tagataagga ttacaggatg gatcgggagc tctgaattca atccgcttca tgtttgcaaa
     4081 ctttttccct ttataatgag caggaattct tattatggca gacctatttc ccgtactcca
     4141 tgcaatgtaa acgggggctt catatccagg aactaacctt ctgtatgaat tcgtagttgg
     4201 atccactatt gctgctaagg cttttgcatg atctataatt ccaccaccaa agtagcgggc
     4261 attctcagac atttcagcat actcatctga tgcgtcatag aacagattac gtcctccatt
     4321 ccacaagctc acgtttacat gcattcctga gccattatcc aaggaaattg gttttggcat
     4381 cattgttgct atcatattat gttctttcgc tatattcttg acgatgtatt tgtaactttg
     4441 tacagaatct gctgcgttaa ctaagctatc gtatcgaata tctatctcgc actggccagc
     4501 agttgcaact tcatgatgat gtgcatcaca aattataccg aatttgctac ttaaaacatc
     4561 cacgcattca ttgcgatatt gcatcagtgt gtcacctggt gcgctaggta gatagccttc
     4621 cttcaatctt aacgcatacc caacattatc agttgaccaa ggagcttctc ttgatgttat
     4681 ttcataactt tgaccgtgtg acggagttaa tgtatctaca gcgagtttat caaatacaaa
     4741 aaactctact tcaggacccc aataagaaat atcatagcct tgttctttta catatttttc
     4801 ggcttttttt gcaatacccc gcggatcctt tggatatggt ccccttgtct ttcctccact
     4861 taaaatgtca catatcagtc tcgctgtggg atattcccgt atccatggaa caatagcata
     4921 cgtagaggag tcggggcgaa ttattaagtc tgattcatgg atttcggtga aacccttaat
     4981 cgaagaccca tcaagtttag gtaatccatc ttcaaaatcc tcctttctaa acatattcga
     5041 ggctatggta gtatgatgaa atcttccgaa tagaccagta aattgtagat ctaggaattt
     5101 tattccatcg ccttcaagtc tctgtaatac ttcttgattt gtgtatgata aagattcgat
     5161 tcttccatca acaactctat aaggcaactg gaatcttctt tctttatcat agtcctataa
     5221 ttaagtctta aaataaattc ctcgtataca gaagagatta gtagaatagc tgataaaaaa
     5281 gtaacatctt ataaagctta acagtattaa gtttcagtct atacaataaa cgagtcgaaa
     5341 actagtggaa agatcagaag agagtaagaa catggatagc aacagagagt cagagacaat
     5401 ggatttgagt tttgtgacag atctccttgt gaaggaggtt caaattccac ctttgcagca
     5461 gatacccccg gatacgtata agacaattgc caagttcata aggatagagt cgctacgaag
     5521 ctatgagagc atagaatcaa agataagaga tgaattgatt cgattgattg cactggcgac
     5581 aaaattacta attgaaataa gatgtcaaaa actagcaggt tataaagtca atgaagggac
     5641 tctattaccg cacgctctag caactgaaga atattccaaa ttgactgaag aggaaaagta
     5701 cattttggaa ggaaatttag atgcttttag aaagaaagag tctattttga tagcatcttc
     5761 gcaggggcgt gagaaaatgc tgaaaactat ctcaaaacta gtacattcaa agaaaataat
     5821 agttagattt ctcaagcccg ttgagcagtt tatgggagta gacatgacta ggtatgggcc
     5881 atttgtggag gaagacgttg ctatcttgcc ttttgaaaat gctaggtcgc ttcttgaaac
     5941 tggaactgca acagaaattc aggatgatgt accggcgaaa tgaatggaaa tctagatatt
     6001 attccgtaca tataatcctg acataagtaa tcttgcctca taatggaata gacatagacc
     6061 agttcgttct attgactatc tatcctactg cggttttttt tgttatagga ctactgggga
     6121 agaagggaaa gatatgcgac acgttgaaat acactttaca gggatttgca tgtatcgttt
     6181 tttctattgt ttatttcatt gcaattcctc atggcggagc acaaggcctt gctatcattc
     6241 taacaatgtt tggtctgtta ttgttgttca tggcgagaaa acagatgatc cagccggctg
     6301 catcacaaga tcggactagg acttcttaaa tgtgaatcct gtttcttcca taattcttct
     6361 tttcatctag atttggattc aatcaattta tgttaaatct tactaattta cagaacatgt
     6421 taatacattg agcgtgatcc tacttactac gtgggttcat gttttcttct cctgtattta
     6481 attagaccca tgagttgata tccgtattca agattgtgct taacatggtt tatgccgtgt
     6541 gatccatgag gtaagaattt accatcaaga acattttcaa tatagatctt caccttcctg
     6601 attgaaattg ttgcatgttg aagttgcctg tcagttagct ttcttcctaa ttctctttct
     6661 atttccggac taaattcctt tgttcctact aatttagaat atttctgcaa tttactataa
     6721 tttatacaca gatctgcaat cttcttatag tcttgatcag gtattttcat tagtaattcg
     6781 tctaattctt ttttcttcct ttgagtcaaa acgctgaggc tgttcgtcat ctcctttcta
     6841 tgagcttttg tatgactttc tgattttgat ttgcgaataa tttctgttcg ttccttttca
     6901 ggtacactat catcctcttt ggtaatagaa tgagattgat tgtctaatat caccggtaaa
     6961 ctcagaatct tatctaccgc ggaagactta tttctttgat aatatctttc gagaccgtaa
     7021 acgccaactc tttctccatt aagatcagtg cccttatgga caatcgatgc gatattgagt
     7081 actagcttcg gataattaga tttcagtgtt tcgtttgagt tgtcataatt ttccattata
     7141 tctctgtaga tgctcaagat tgcatcatct atcaatctag tgggcggttg accaccagcg
     7201 tttgaaattt ggccttcttt actgaaatcc aatcccttag ccccaattgt caaaaaatcg
     7261 caaagttctg atttagaaaa agagtaatgg ttagtttcac aagacattac tatagccttc
     7321 atgatatcaa gccaaagatc agtaggattg gctgtattat caaagacctt tttcataatt
     7381 cctaaggcat ctttccttat cttgatttca ctgattctca gttcttcaaa agctcgattt
     7441 agtaattctt ctaccgatgg aattatgatt tcattggaat tattattatt attggccaac
     7501 cagtagtcac ttatagcatt aatcctaata ttaatgataa tatttaaaga aaatatttaa
     7561 tggttttgta atgcgtacct cctaaaatat cacattaaaa ttttatagat aatatttgta
     7621 gatatacaag ggtagaacga tttgttggta tatggtgctt aatagaccaa tagttagtca
     7681 tgaattacag aggcatttgc tacagctaac ctcgcacaaa atcccattac accaccgaac
     7741 actatgtgta atgctaacga accaaataac atggtgtctg aaagtgtaag aagttgtttt
     7801 gcgaacagat aatcttctga tgtcggaggt gatgtgctca atattttctg aagagttggt
     7861 tgcataacag caaaattaat cgggaggaag aggactagcc acacaattac tccggcgaga
     7921 ataccagtac ccaatccttt taccaacgaa ttgatgtaaa agatcttaac atgtttggaa
     7981 attgtactat agattatccc tatgattacc gccgttatca taaacagtgt aaatccaatg
     8041 tatacagcgt acggtgattg aattccaaat gccagtccaa ccattttgta aagagttccg
     8101 ggcgctaagc cgagctctga atctattgct agaaataatc cgaatatggc ccacgctgcc
     8161 gtgagacccg cagtcatgcc agagggccta tgtatgatgg tacgagatga agactgcata
     8221 cttatattat gcaatatcta atatttagat ttttttgtac ggcaaataat attctaatta
     8281 tattatttct atttccttat ttttaggttc gatatttgga agccgatatt tgaaattgta
     8341 ctaattttca attaattaaa tcgcttattt ggtataacgc attacgttat tcccgaacag
     8401 aactttgggc tcctgctaga taccgagttc tgaatcaacc agggttaatg atttattcga
     8461 attaatgaaa attaattagc gttgtttact attagcatta ttctaattta atccggccac
     8521 catgcttttt aacttctgat aaaataacgt tcgaaacttt ttctagtatc tcttgaacgt
     8581 attccttctt tttgcctttt gaaactatct ggactttcat cactgggatt ttgtttttct
     8641 tgtatccctg tggatgggtt ttcaagtaca aagcatgtcg tggaaatgat ctgaccaatt
     8701 ttatcaacgt cctggataac gtggcctcac caactccctc tacgtggtaa ttacgttctt
     8761 caactgcgaa ttgtcctatt tgttgtttga tattacctaa aatgctgtgc gtaaagattg
     8821 ccttcatttc agacggaacg ccaggtaaac atacgatttg tgtttttttg gtaaaaatgt
     8881 gaactgcttg ggcattgcca acagggttgt aaataggttt ggactcttga gggatcatcg
     8941 ccatttttaa tctggcagaa ttcaatctca cgttctgtcc cagtctctta tagctgttct
     9001 ttaccatctg taatgcaata ggatccaaga tcaattttct ctttaagctc cttgctaccg
     9061 cttgtatagt catgtcgtcg tacgttgggc caagaccacc gcatgtaact atccaatcag
     9121 gttttctctc tagactgtca tttaatgcga agtcaatttc ttccaagtca tctgctacaa
     9181 ctattactct gcgtaccttg gcacccaact ttgttatttt tttcccgatc cagtgggcgt
     9241 tagtattgag cgttatacct gataacaact cactacctat acacagaatt tcaacttcgc
     9301 tcaatgtgga tccgtaaagt atgtagaaga tgaatttaag attaagatca gaaatgccat
     9361 tacttgaaat tcaattattc ttgacccttc agaccagtca tctaatttat tccacagatt
     9421 tgagaagcaa ccacgactta gttggcaata tgttagatcg cctgccagga ttgaaattat
     9481 taatatcatt cggctttagc tcctgtttca acacacttcc ctgctctttg gacatttgta
     9541 aacgaacgaa aagtgtctta aagtaattca ttcgagaaga ggtgatatag gatctttttt
     9601 gttgtcatta gcgaactcac cctagtgaaa tttctcctaa atagaacagt cgggtaacac
     9661 aatagtcatt ttgatcggcc aatccctgtt attacaaagg tctatttcag catattcctt
     9721 agtctctcct taaaattaaa ggctagtata ttca
//
LOCUS       DASSIK010000006         2017 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1180293, whole genome shotgun sequence.
ACCESSION   DASSIK010000006 DASSIK010000000
VERSION     DASSIK010000006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2017)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2017)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2017
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1180293"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..387)
                     /locus_tag="VFI64_00125"
     CDS             complement(<1..387)
                     /locus_tag="VFI64_00125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241721.1"
                     /translation="MISITATTKAAIGIKLLPEAVFVITNHSVVIQQTGVIAMEINLE
                     LADNMNISMSRTFKFQWGYYNNSNKFIDKWLEENPIQLRQVRQISKSLKQIFFTQSYP
                     IQRTIDRANALSFSNIHLHEIRGEYTV"
     gene            377..1666
                     /locus_tag="VFI64_00130"
     CDS             377..1666
                     /locus_tag="VFI64_00130"
                     /inference="COORDINATES: protein motif:HMM:NF017263.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alginate lyase family protein"
                     /protein_id="HET7241722.1"
                     /translation="MLITASNFTATSVNRVFAGSNIGLNSTSPEKTQVLPRTVVLDPS
                     TLLKLKQDFNEGNNTMLGLSLHALVLQASSLLNKKATSVVDKSELPPSGDIHDFLSLA
                     PYRWPDPTKKDGLPYIGRDGKTNPEIYSIPDKRNMDDMIHSVTVLAAAYYLTGNSQYA
                     SKAEELLRNWFLNNSTKMNPNLTYAETVRGKSKIYSAGIMAGRNLTDVVDAIGLIQRS
                     SAWSNEDQVGIVSWFSQYLDWLLKSNSGKEEALKINNHGTYYYVQVSAIALFLNKTNI
                     TRNIIKASIEPPSSSTFVAPEKSIAAKILPNGLQPFELQRTRSLDYSMFNLLGLFKLA
                     NIGQNAGIDIWNYKTDRVPLLQKALDFLLPFIIKKHSWPYSQVTQINRYLATDLLCQA
                     IIHYPNRTGPYLDAYKIVSRNSTFLNIDNLSPTCHNS"
     gene            complement(1774..>2017)
                     /locus_tag="VFI64_00135"
     CDS             complement(1774..>2017)
                     /locus_tag="VFI64_00135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241723.1"
                     /translation="DPPLLDKIANNLEETRNVIFGEGFGGITDLEVGPDGYLYVLSLY
                     QGGNDCDTAKYWTPSCISYTTRLEGTIFRIVPNSNN"
BASE COUNT          622 a          408 c          375 g          612 t
ORIGIN      
        1 tacagtatat tcccctctta tttcatgcaa atgaatattg ctaaacgata atgcattcgc
       61 cctatcaata gtgcgttgaa tcggataact ttgagtaaaa aatatctgct ttaaggattt
      121 tgaaatttgt cgaacctgcc gtagctgaat tggattctct tctaaccatt tatcgataaa
      181 cttattagag ttattgtagt acccccattg aaatttgaac gttcgtgaca ttgaaatatt
      241 catgttatct gcgagttcta aattaatttc cattgcaata acccccgttt gctgtatgac
      301 cactgagtga ttggtaatta cgaagacagc ttccggtaga agtttaatcc cgattgcagc
      361 tttggtagtg gcggtaatgc tgatcactgc ttctaatttt actgccacca gtgtaaaccg
      421 agtatttgcc gggagcaata ttggcctcaa ctctacaagt cctgaaaaaa ctcaagtatt
      481 gcctcgaaca gtagtgctag atccttcaac acttcttaaa ctaaaacaag atttcaatga
      541 aggcaataac accatgctgg gccttagctt acatgcattg gtactccagg caagttccct
      601 tctcaacaag aaggcaacat ctgtggtgga caaaagcgaa ttaccaccaa gtggtgacat
      661 tcacgacttt ctttctttgg cgccatatcg ttggccagat ccaacaaaga aggacggttt
      721 accgtatatt ggtcgtgacg ggaagactaa tcctgagatc tattcaattc ctgataaaag
      781 aaacatggat gacatgattc atagcgtgac tgtacttgca gcagcttatt accttacagg
      841 gaattcgcaa tatgcatcca aagctgaaga actgctacga aattggtttc taaataatag
      901 taccaaaatg aatcctaatc taacatatgc tgaaacagtt cgcggcaaga gtaagatata
      961 ttcggcaggc attatggctg gaagaaattt gactgatgtt gttgatgcaa tcggattgat
     1021 acagcgttcg tctgcttgga gcaacgaaga tcaagtagga atagtttctt ggtttagtca
     1081 atatctggac tggcttttga aatcaaattc aggtaaggaa gaggcactaa aaataaataa
     1141 tcacggtacc tactattacg tccaagtttc agcaatcgct ttattcttga ataaaactaa
     1201 catcactagg aatataatta aggcctctat agagcctcca tcatcatcta cctttgtagc
     1261 ccctgagaaa tcgattgcag ccaagattct acctaatggt ctacagccgt tcgaactaca
     1321 aaggacaagg tcgttggact acagcatgtt taatttacta ggcctcttca aattggccaa
     1381 tatcggccaa aatgcaggta tagacatttg gaattataaa actgatcgtg taccgttatt
     1441 acagaaggca ttagactttt tgcttccttt cattataaag aaacattctt ggccttattc
     1501 ccaggttaca caaatcaata gatacttagc aacggactta ttatgtcaag caataatcca
     1561 ttatcctaat cgcactggcc catatttgga tgcgtataaa atagtatctc gaaatagtac
     1621 gtttctcaac attgataatt tgtcacccac ctgccacaac agctagaatc catcgaatct
     1681 tcattagtgg gtagacacga ttagtgagat tgagattata tttgctggaa ctatttgtca
     1741 aattacttgt ttgctgaaga ttgcaaaaag cgatcaatta ttggaatttg gaactatccg
     1801 aaatattgta ccttccaaac gcgttgtata tgaaatgcat gatggcgtcc aatattttgc
     1861 agtatcacag tcattacccc cttgatatag cgatagtaca tatagatacc cgtctggacc
     1921 aacttcaaga tcggttatcc ctccaaagcc ctctccaaat attacgtttc gtgtttcttc
     1981 cagattattt gctattttat ctagtaaggg aggatcc
//
LOCUS       DASSIK010000007         2241 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1377282, whole genome shotgun sequence.
ACCESSION   DASSIK010000007 DASSIK010000000
VERSION     DASSIK010000007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2241)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2241)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2241
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1377282"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..360)
                     /locus_tag="VFI64_00140"
     CDS             complement(<1..360)
                     /locus_tag="VFI64_00140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HET7241724.1"
                     /translation="MTDNPFKKCINPSCNLVYDIDNTTHTCKCGSFLDVVYPSSPSRE
                     LTEIFSIRRNPKGNIFNESGVWRFRELINFAGIDTEDFQQCSKVLVSMDGSEGRQSKP
                     YKMSKVSEYANMDPECMF"
     gene            complement(432..1385)
                     /locus_tag="VFI64_00145"
     CDS             complement(432..1385)
                     /locus_tag="VFI64_00145"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase-related protein"
                     /protein_id="HET7241725.1"
                     /translation="MTIIPLREHLVEVINETVARYKHKPLLLSGGLDSSILSTIINPE
                     LTVVISFGSTSQDLIYSKIVAQKYSRFHLERIIDFDEFNRLIPNVIRILKTFDPTEVR
                     NSTILFAGIMEVKKNGYLEVVTGDGADELFAGYNYFAKYYSDPKKLQEILYELWNNMH
                     FASKDIAYASGMKVHSPYLEEPLLSFARGLNVKEKVQEERGIKWGKYILRKAFEDELG
                     SLVWRSKMALERGSEVDKASEFIEDAIDDEEFRTERKSSVSEHVSLRTKEQLYYYRIY
                     RSFFPPPFEESCSVKRCPYCAACLREPGRYCDTCGAFPITS"
     gene            complement(1495..1794)
                     /locus_tag="VFI64_00150"
     CDS             complement(1495..1794)
                     /locus_tag="VFI64_00150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HET7241726.1"
                     /translation="MAKPDNAEKDKYFFDIRTIMTGETQLRARRTRMKILKAIADRNG
                     SAGFSEIKYATDLSTGSIYYHLERMVVYVTKRSKHYHITKEGLQLLDQNAQVATR"
     gene            1937..2077
                     /locus_tag="VFI64_00155"
     CDS             1937..2077
                     /locus_tag="VFI64_00155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YHS domain-containing protein"
                     /protein_id="HET7241727.1"
                     /translation="MPTDPVCGIEMDEDLATVYEYDDKRYYFCCEGCKSIFSRKPKKY
                     LK"
BASE COUNT          655 a          445 c          387 g          754 t
ORIGIN      
        1 aaacatgcat tcaggatcca tgttcgcata ttctgaaact ttgctcatct tgtaaggttt
       61 ggattgccgt ccctcagatc catccatgga gacgagtact tttgagcact gttgaaaatc
      121 ctcagtatct atcccggcaa aattaattag ctcacggaat ctccatactc cactttcatt
      181 gaatatatta cctttcggat ttctacggat agaaaaaatc tcggttagct ctcgcgacgg
      241 actggacgga tataccacgt ccaaaaaaga tccacactta caggtgtgag tggtattgtc
      301 tatatcatag acgagattgc atgaggggtt tatacatttt ttgaacgggt tatctgtcat
      361 tgattacgat cctttttgat tctatttaga cgttatcggt cttcagagat atcaaagtat
      421 atgaactatc tctaagatgt tatagggaag gcaccacaag tatcgcaata tcgtccgggt
      481 tcacgtaaac aggcagcaca atagggacac ctctttactg aacagctctc ttcaaaaggt
      541 ggaggaaaaa atgatctata tatcctgtaa taataaagtt gttctttagt ccttaaagag
      601 acatgttcag agacactgct tttcctctca gttcgaaatt cttcatcatc tatggcatct
      661 tctatgaatt cacttgcctt gtccacctcc gagccgcgtt cgagtgccat cttactgcgc
      721 cacactaacg agccgagttc atcttcgaag gcttttctaa gaatatactt gccccattta
      781 attcctcttt cttcttgaac tttttctttt acgttcaaac ctctggcaaa acttagcaat
      841 ggttcttcaa gatacgggct atgtactttc atccctgacg cataggctat gtctttagaa
      901 gcaaagtgca tattgttcca caattcatat agaatctctt gtaatttttt tggatccgag
      961 taatatttgg cgaaataatt atatcctgca aatagctcat ctgcgccatc tccagttact
     1021 acttcaagat atccattttt cttgacttcc attattcccg caaaaagtat tgtagaattt
     1081 ctaacttccg ttggatcgaa agttttaaga attctgatga catttggaat cagcctgtta
     1141 aactcgtcaa aatcaattat tctttcaaga tgaaatctac tatacttttg tgccacaatc
     1201 ttggaataaa taagatcttg tgaagtgctg ccaaatgaaa tcacaactgt caattctgga
     1261 tttattatcg tggaaaggat gctactgtct agaccacccg aaagcagtaa cggtttatgt
     1321 ttatacctcg ccactgtctc attaattact tctaccaaat gctctcgaag agggatgatt
     1381 gtcatgccgg tccagatttt tcagatggct tagtctacaa atccaagcat tgcgaaataa
     1441 ttgatctaaa taaaaatgat tgatatcgtt cccaatttat ttctaattca gttctcatcg
     1501 agtagccact tgagcatttt ggtcaagtag ttgtaaccct tcctttgtaa tatgataatg
     1561 tttggatctc tttgttacat atactaccat ccgttccaga tgatagtata ttgaaccagt
     1621 ggacaaatcc gtcgcatatt taatctcgga aaacccagca gatccgtttc ggtcagctat
     1681 ggctttaaga attttcattc tcgttcttct agctctaagc tgagtttctc ctgtcattat
     1741 cgtcctaatg tcaaaaaaat atttatcctt ttctgcatta tcaggcttag ccatgatcta
     1801 tgaactaaaa agtatgcgat atcgttcttt gccccacagt ttaagctaag gaactaacta
     1861 acaatgaatt gaacaattga gctaattgct tgaacgtttg ataataatta tatagcatct
     1921 ttctgttatt cgaagtatgc ccacggaccc tgtatgtgga atagagatgg atgaagacct
     1981 tgctactgtt tacgaatatg atgacaagag atattacttt tgttgcgagg gctgtaagag
     2041 catatttagt cgtaaaccga agaaatatct gaaataagct tcttaaaaaa tcatataata
     2101 attttgcaga agttatttat acaaaattat tcttttggtc atatcctttt gacagcgttc
     2161 taattaagat attcatgcgt gagatttata atatttgtct tgcccgaaca ttgaaataat
     2221 gtgcgctaaa tgtggaaatt t
//
LOCUS       DASSIK010000008         2201 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1047, whole genome shotgun sequence.
ACCESSION   DASSIK010000008 DASSIK010000000
VERSION     DASSIK010000008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2201)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2201)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2201
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1047"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            470..544
                     /locus_tag="VFI64_00160"
     tRNA            470..544
                     /locus_tag="VFI64_00160"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:505..507,aa:Met,seq:cat)
     gene            1009..2163
                     /locus_tag="VFI64_00165"
     CDS             1009..2163
                     /locus_tag="VFI64_00165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046912 - acyltransferase activity, acyl
                     groups converted into alkyl on transfer [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate/2-methylcitrate synthase"
                     /protein_id="HET7241728.1"
                     /translation="MRNIEVADTRICAIDGENGKLIYRGYDILDLVSHSTFEETCFLL
                     LFGDLPTTSELLQFTSKLKETRTLNDGIYRNLKNRPTTATPMDILQSCAVELADYDPD
                     IQDDTKETNVQRAIMLISTIPTIVAAWNRIRQGLEPLEPLEELTHAENFLYMLFGERP
                     THEVAKIFDICLILHAEHSFNASTFAAREIASTKAHLYASISGAIGALSGSLHGGANT
                     QVMKMLLEIGERNNVENWVVKKLKDNEKIMGMGHAVYRTTDPRAEVLYRLSKAIARER
                     NTPWFDITEQIEKVTRKYFYENRKQSIYPNVDLYSASLYYSLAIPRDLNTAIFAISRI
                     SGWSAHVIEEKFAEAAPKPALYRPKAVYVGRYCGPMGCEYNPIEKRPKAE"
BASE COUNT          697 a          436 c          448 g          620 t
ORIGIN      
        1 attttttgtt gtggcaattg tgaaattttc aggtgatgta aatttgataa tcgtcccccc
       61 aaatcagctg ctgatcttca gatatgaata gtaagttact aaaatgaaga ccataatctt
      121 tattcactcc ctagtcaacg agcaatatat cacgtgatct tttctcttgg tccaaaatca
      181 ggaatcaaac tcctctttga ccaagagatc tgccgacaaa tgaaaattta aatctatcga
      241 gcttaattag gatttaaaga aacacagcat agaaattatt ccatttgtga ctaactgact
      301 tagtacagtt ttttagcact aaattcgcgt catgcgcact atgatccagc caaaagcgat
      361 aattaggtcc atgctgatct cgtctgcgtc tgtaaaagtt tggtaatctt cgtccttgaa
      421 tagaatatat tatgcgttca gaaatcacat taggaaaagg gctgagcgcg ccggggtagc
      481 tcagcttggt cagagcgttc gactcataat cgaaaggtcg cgggctcaag tcccgcctcc
      541 ggcatacgac gaatattgca taaggtatct cttcaatcat ttcctgaagt tacattcgtt
      601 ttaaatcggt atttgttcga aacaaatgaa tgatgcttcg gtactcataa tcgtcatcat
      661 taaattcaga cggctcttcc ttcacttcat cagcatccac tgatctagta tgtgggacaa
      721 aataaagtgt ttcactaaat tcaaatgatt ccttttaatt tagaagcact tttcgtaata
      781 ataggcggaa gacaacggag gggcgttcag actcgggcaa aatcctcagt tgcgtccata
      841 aaatactaaa catcatgatc gccttgagag ggccaaacga cagcttgttc tgaacctgat
      901 atgtcctacc tctacataat ttattgtcaa acacgaatat ttagaaaaca ttagtttaat
      961 atataaaatt gacacattat agtttagatg gacgcacgga atataggctt gaggaatatt
     1021 gaggttgctg atactagaat ttgtgctata gatggagaaa atggcaagct catttacagg
     1081 ggttatgata ttttggattt agttagtcat tcaacttttg aggagacttg tttcctcctc
     1141 ttgttcggtg atttgcccac aacaagcgaa ctgttgcaat ttacttctaa attgaaggaa
     1201 acgcgaactt tgaatgatgg aatttataga aatttgaaaa atagaccaac aactgctacg
     1261 ccaatggaca tcttgcagtc ttgcgcagtg gaacttgctg attacgatcc tgacattcag
     1321 gatgatacta aagaaacgaa cgttcaacga gccataatgc taatttcaac aattcccacc
     1381 attgttgctg catggaacag gataaggcaa gggcttgagc cactggagcc cttagaggag
     1441 cttacgcatg ccgagaattt cctttacatg ctattcggcg agagacctac tcatgaggtc
     1501 gctaagatct tcgatatttg tctaatactt cacgctgagc atagttttaa tgcttccaca
     1561 tttgcagcaa gagagatcgc ctcaactaaa gcccatttgt acgctagtat tagtggagca
     1621 attggagcac tttcaggatc tctgcacggt ggagcaaata cgcaggttat gaaaatgctt
     1681 cttgaaatcg gtgagagaaa caacgtcgag aattgggttg taaaaaaatt aaaggataat
     1741 gaaaagataa tgggcatggg tcacgccgta tatcgaacaa ccgatcctag ggcagaggtt
     1801 ctgtacagac tatctaaagc aattgccaga gaacgaaata ctccttggtt tgacatcacc
     1861 gaacaaatcg aaaaggtaac aagaaaatat ttttacgaga acagaaagca gtcaatttat
     1921 ccaaacgtgg acctttatag tgcttcacta tattatagtc tggcaatacc cagagatctc
     1981 aataccgcca tttttgcgat atccagaata tctggctggt ctgcacacgt aattgaagaa
     2041 aaatttgccg aagcagcgcc aaaaccggca ctttacagac cgaaggcagt ttatgtaggc
     2101 agatattgtg gtccgatggg ctgtgagtat aatccaatcg aaaagagacc caaggctgaa
     2161 taatccccga atagaggaca aatcctaatt accgcatcac c
//
LOCUS       DASSIK010000009         2045 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_690559, whole genome shotgun sequence.
ACCESSION   DASSIK010000009 DASSIK010000000
VERSION     DASSIK010000009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2045)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2045)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2045
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_690559"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(4..735)
                     /locus_tag="VFI64_00170"
     CDS             complement(4..735)
                     /locus_tag="VFI64_00170"
                     /inference="COORDINATES: protein motif:HMM:NF012234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HET7241729.1"
                     /translation="MFKNLFKKIDSVFGIQEESDIGPEEKFFFDVVGYSDIKKLFMKS
                     IVSKEPVHILLTGPPASSKTVFLLEMAEELNDAYYLDSVGASGPGMVGHLFENDTKYL
                     LVDEIDKMKKNDQAALLNVMETGILSETKLKGKTRQKKMKLWIFAASNEATRLIPPLR
                     SRFMELHLEEYSFDEFIEITSRLLKKRYHLERIITERIGYSVWNKMKSKDIRDVIKIA
                     KLTRSLSDVDWLVDVQMKYGRRKDP"
     gene            818..1204
                     /locus_tag="VFI64_00175"
     CDS             818..1204
                     /locus_tag="VFI64_00175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241730.1"
                     /translation="MLCYECKEWCTGIEGPLSCEIGSVPGFKKSILRFEAFKLSGKSP
                     GGFAIITDLGGNGETRWDIQSMELRQFQNQFVAELKGPFFGGPPGFVKNCIGNELKNS
                     RLTLNVDSTCKAPRQSERSEIPEHTS"
     gene            1137..1613
                     /locus_tag="VFI64_00180"
     CDS             1137..1613
                     /locus_tag="VFI64_00180"
                     /inference="COORDINATES: protein motif:HMM:NF012573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241731.1"
                     /translation="MLIVLVKPPDNPKDPKSPNIRASIRTESTAQLFGVFFGKGECSV
                     SNGIAGQFLNSAGCLSGTQKDDNLVDEFNQNCINGGAGNDGLSGGPGNDKLNGDDGND
                     KLKGGDGKDILVGGNGNDGLSGGKGADLFQCGAGNDKITDFKPSEGDKKTNDCELF"
BASE COUNT          638 a          372 c          429 g          606 t
ORIGIN      
        1 aattcaagga tcttttctgc gtccatattt catctgtaca tctactagcc agtctacatc
       61 agatagcgat ctagtcagct ttgcaatctt tatcacgtct ctgatgtctt tagatttcat
      121 cttattccac acagaatatc ctattctttc agttataatt cgctccaaat ggtatctctt
      181 cttgagcagt ctactggtaa tctctatgaa ttcatcaaaa ctatattctt ctaaatgcaa
      241 ctccatgaat cttgatctta gtggtggaat caacctagta gcttcgttac ttgcagcaaa
      301 tatccacaat ttcatcttct tttgtctagt ttttcccttt aactttgtct ccgaaagaat
      361 tcccgtctcc ataacattga gcagagccgc ttggtcattc tttttcatct tgtcaatttc
      421 atcaactaat agatatttgg tatcattttc aaataggtgt ccaaccatac caggcccaga
      481 agcacccaca gaatctaggt aatacgcatc atttagttct tcagccattt ctaacaagaa
      541 gaccgtcttc gaagaggcgg ggggacctgt caacagtata tgtacaggtt cctttgatac
      601 tattgatttc ataaatagtt tctttatgtc agaatagcca actacatcaa aaaagaattt
      661 ttcttcaggt ccaatgtctg attcttcttg aatgccaaat acgctgtcta tcttcttaaa
      721 taaattcttg aacattttaa ttcacgttct tttgaattta tattgagaca gcgtattaaa
      781 ggatctggat tcattttcta gtaagaattc atactgtttg ctttgttatg aatgtaaaga
      841 atggtgtaca ggaatagaag gacctttatc ctgcgaaatt gggtcagtac ctggctttaa
      901 aaagtcaatt ttgaggtttg aagccttcaa gttatctgga aaaagtccag ggggttttgc
      961 aattatcaca gatctaggcg ggaatggaga gacaagatgg gatatccagt caatggaatt
     1021 acgacagttt caaaatcagt tcgtagcgga acttaagggt ccattttttg ggggtccccc
     1081 tggtttcgtg aaaaattgta ttggtaatga attgaaaaat agccgattga cgttgaatgt
     1141 tgatagtact tgtaaagccc ccagacaatc cgaaagatcc gaaatccccg aacatacgag
     1201 ctagcattcg gactgagagt actgcccaac tctttggggt ttttttcggt aaaggggaat
     1261 gtagcgttag taatggtatt gctggccaat tccttaatag tgcagggtgt ctaagcggta
     1321 cacaaaagga cgataatctt gtggacgaat ttaaccaaaa ttgtataaac ggaggagcgg
     1381 gcaatgatgg attaagtggc ggtcctggaa acgacaagtt aaacggagac gatggtaacg
     1441 acaaactgaa gggtggtgat ggaaaagata tactggtggg tggaaatggt aacgatggat
     1501 taagtggcgg taaaggtgct gatttatttc aatgcggtgc tggcaacgac aagataactg
     1561 actttaagcc atcagaaggc gacaagaaga ctaacgactg cgaactgttt tagtcttaga
     1621 agtacctaac tatcacatgg gaagagatat tataactaag actttcaaat gtgacagttg
     1681 tgtacatttc tggcgtccga catcgtggtt attaccaaaa acctgtccta aatgtaggag
     1741 ccctgattgg gataaaccca aacgaaggca ttagaaatag gcgtaatacc taaagctgac
     1801 tgctgctctg ctattccttg ataggggagg acgattgaac aaaaacaatc acaaaaatgt
     1861 gactaaagcg tcatgatttc acaaaatcag aaaaagagta cattagaggt attgtccaca
     1921 atctttcatt ccaaagactg acggaccagg aaatagtcca gtggttgcat gaggagaagg
     1981 aaattgacat agatagaagt acggtatcta aaatgagaaa ctaggtagaa acaaaagcag
     2041 agaag
//
LOCUS       DASSIK010000010         3430 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_691205, whole genome shotgun sequence.
ACCESSION   DASSIK010000010 DASSIK010000000
VERSION     DASSIK010000010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3430)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3430)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3430
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_691205"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            61..366
                     /locus_tag="VFI64_00185"
     CDS             61..366
                     /locus_tag="VFI64_00185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="Gar1/Naf1 family protein"
                     /protein_id="HET7241732.1"
                     /translation="MKQVGEVLHLAKSGKLIVRLNPSYDLSIIGQSVVDKKGTRIGKI
                     IELLGPVKSPLASALPIADTTKMMSGMAVFQTEIITRHGDEFLKRRSRKNLFKAKRK"
     gene            363..1454
                     /locus_tag="VFI64_00190"
     CDS             363..1454
                     /locus_tag="VFI64_00190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TFIIB-type zinc ribbon-containing protein"
                     /protein_id="HET7241733.1"
                     /translation="MTPIEYCSQCPECRSSIVHDYAKGEYICHMCGYVVIEAADDYGP
                     ENHSTDFEEKSKNTRASGSTSFSLHDFGLRTEISAASKDYSGRCIDYQVAEQMNKARK
                     WHTRIRVNSPKDRRLSNVLSKINEMCSSLCLPKTLVETASIIYRNFESTCEAKGKSII
                     CIAAATIYLACKRCGVVRSLEEIIKAAGISEHDRSSVKLASKYYRSMVMDMNNSPEND
                     VPFGKMPPVPSETGSPSVKPLLYESITLERTGKSLYSMMSPASASVAIDHYISKLANI
                     SKIDTRVERLAIDIAHKTNNNLLADGKAPNGLAAAYIYLAAVLLGVNLLQVDISNFAG
                     ITEVTIRNRCKDIFTNFKLVINVKPMSNF"
     gene            1838..2161
                     /locus_tag="VFI64_00195"
     CDS             1838..2161
                     /locus_tag="VFI64_00195"
                     /inference="COORDINATES: protein motif:HMM:NF015268.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HET7241734.1"
                     /translation="MGGAKKKPAASSNKGSSGPGGDEKKADTTKKSSTKPLQKQKSSV
                     IMDEGQGMKSIRLLKPITSQALARATGVKISVANSFLRSLETKGVVKAIAGYSGHKIY
                     QVATT"
     gene            complement(2347..>3430)
                     /gene="gatD"
                     /locus_tag="VFI64_00200"
     CDS             complement(2347..>3430)
                     /gene="gatD"
                     /locus_tag="VFI64_00200"
                     /EC_number="6.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Glu-tRNA(Gln) amidotransferase subunit GatD"
                     /protein_id="HET7241735.1"
                     /translation="LSPDEKSTNPPRVLLISTGGTISSRVDYRTGGVSSALTASELYE
                     SVPELREYSSIDPEVLFTEYSENLTPEHWTIIAKTVHEKILSQKYKGIIISHGTDTMH
                     YTSAALSFALQNLPIPIILVGAQRSSDRPSSDAALNLLGAAVIATKSNIAGVFVVMHN
                     SISDDVISCHLGTRVRKNHTSRRDAFESIDVDPVALVKGENIELSARNSQLSLHSRRN
                     GIEKIVAKPKFDKRVSLIRFYPGFDPRIIDYCVQLGNKIIILEGTGLGHVSRDCIPSL
                     QNAVRNKVLVFITSQCIWGRTSLDVYETGRDLLNIGVTPLRNMLTETATVKAMWALAN
                     CKNPREIKQVMQENIANEITTRIPIK"
BASE COUNT         1094 a          680 c          684 g          972 t
ORIGIN      
        1 aactaacttt tattgacaga ataaaatgat aacaagtgtc ctagattggt gaatatgaag
       61 ttgaaacaag tgggagaggt cttgcacttg gctaagagtg gcaagcttat tgtcaggctt
      121 aatccctcat acgacctttc aataataggt caatcagtcg ttgataagaa aggaacaaga
      181 atagggaaaa tcatcgaatt acttgggccg gtaaaatctc ccctagcatc agcgttacca
      241 atagctgaca caactaaaat gatgtctggt atggcagtct ttcaaactga gataattact
      301 agacatggtg atgaattctt gaagcgacga tcacgtaaaa atctattcaa agcaaagaga
      361 aaatgacacc tatcgagtat tgttcacaat gtcctgaatg cagatcgagt attgtccacg
      421 actatgctaa gggggaatat atttgtcata tgtgtggata cgttgtcata gaagcagcgg
      481 atgactatgg cccagaaaac cattcgactg actttgagga aaaaagtaag aatacacgag
      541 caagtggttc aaccagcttc tcattgcatg atttcggatt aagaacagag ataagcgcag
      601 catcgaagga ttatagtggg cggtgtattg attatcaagt tgccgagcaa atgaataaag
      661 cacgtaagtg gcatactcgc ataagagtaa attctcctaa ggataggaga ttgtcaaacg
      721 ttttgtctaa aatcaatgaa atgtgctcat cgctctgtct gccaaaaaca ctagtcgaaa
      781 ctgcctccat aatttatcga aattttgaaa gtacgtgtga ggcaaaaggc aaatctatca
      841 tatgtatagc tgcggcaacc atttatctcg cttgcaaaag gtgcggagtg gtaagatctc
      901 ttgaagaaat aatcaaggct gcggggattt cagaacatga tagatcaagc gttaaacttg
      961 catccaaata ctataggtct atggtgatgg acatgaataa ctctcccgaa aatgacgtac
     1021 ctttcggaaa aatgccgcct gtaccgagcg aaacaggtag cccatcggta aaacctttgc
     1081 tctatgaatc tattaccttg gaaaggaccg gtaaatctct ctattctatg atgtcgcctg
     1141 catcggcatc agtagcaata gatcattata tatcaaagct cgccaatatt tccaagattg
     1201 atacgagagt agaaagactt gctatagata tagcccacaa aacaaataat aatttactag
     1261 ctgatggaaa agctccaaac ggacttgctg cagcttatat ttatttggca gcagtattac
     1321 tgggtgttaa cctccttcag gttgacatct ccaattttgc gggcattaca gaggttacaa
     1381 tccgtaacag atgcaaagat atctttacca actttaaatt ggtgatcaat gttaagccga
     1441 tgagtaattt ctgatactgt ttactaataa cgtacttgac cccatctctg cccctttata
     1501 atatgtccta ccttaccatg cattagataa attagcttgt caagaatggg cgacggagta
     1561 tttttgaaaa gatgaactaa aatgattagt ttgctccttt ctgcttagtt tttttccatt
     1621 ttttccaggg tagttgccac aatggaaaaa tccaaaaact tgaactacga caatttgttt
     1681 aaaatattgc gagtatcaac gcaacatatc taccgacaga tacgcagcaa cacagatttt
     1741 tccaaatctc acaatcagaa tgtagataat ttttgattgc ccctgtagac aactttcaac
     1801 cacagaactt ataaaatggt acaggcatgg tgagtttatg ggaggagcaa agaaaaaacc
     1861 agctgctagc tcgaacaaag gatcgtcagg tccaggcgga gatgaaaaga aagcagatac
     1921 tacaaagaaa agttcgacta aaccgttaca aaaacaaaaa tcaagcgtca taatggacga
     1981 agggcaaggg atgaaatcaa tacgtctact gaagcccatt accagtcaag ctctggcccg
     2041 ggctactggc gtgaaaatat cagtcgctaa ttccttttta cgctctcttg agacgaaggg
     2101 agttgtaaaa gctatcgcag gatatagtgg acacaagatt tatcaagtcg ccacgacctg
     2161 aataccttta acaggtcagt agttttcttc cacgaagaac ttttttgaaa aatctttaca
     2221 gttcttagag tatcgtccgg atactacaat tgcgggaatt gcctgagtcc tgaaaacgtt
     2281 accaaaatat catccttttt tgagcgatta gagtaagaac ataaaaattg caaaggcttc
     2341 attcaactat ttgattggta ttcgtgtagt aatctcattg gctatattct cctgcataac
     2401 ctgcttaatt tcacgaggat tcttacaatt ggctaatgcc cacatcgcct tcacagtagc
     2461 tgtctcagtc agcatattcc gaagaggagt aacccctatg ttcaataggt ctcttccagt
     2521 ttcatagaca tctaaacttg tccttcccca aatgcattgg gaagttataa acaccaagac
     2581 tttattccgt acagcattct gcaacgaagg gatacagtct ctacttacat ggccaagtcc
     2641 tgtaccttct aaaataatta tcttgttacc aagttgaaca caataatcta ttattcgagg
     2701 atcaaaacca ggataaaatc taatcaacga aacacgctta tcaaattttg gttttgctac
     2761 aatcttttca atcccatttc gtctactatg aagagataat tgtgaatttc gagcagataa
     2821 ttcaatattt tcacccttta caagtgcaac tggatcgaca tcgatcgact cgaatgcatc
     2881 ccttctgctc gtatgatttt ttctaactcg agttccaaga tgacatgaaa ttacgtcgtc
     2941 agatatcgaa ttgtgcatga ctacaaagac ccctgcgata tttgactttg tcgctatgac
     3001 ggcggcccca agcaagttaa gggccgcatc tgacgaaggt ctgtctgatg atctctgagc
     3061 accaactaaa ataataggaa taggcaggtt ttgtaaggca aagcttaggg cagctgaggt
     3121 atagtgcatc gtgtcagtac cgtgtgatat tattattccc ttgtactttt gggagagaat
     3181 tttttcatga acggttttag ctataatggt ccaatgttct ggagtcagat tttcgctgta
     3241 ttcagtgaag agtacttccg gatctattga tgaatactct cttagttcag gaactgattc
     3301 atacagttca gacgcagtaa gagcagaact aacgcctccc gttctatagt caactctgct
     3361 cgaaatcgtg ccgcctgtac ttatcaacaa aacacgtgga ggatttgtag atttctcatc
     3421 cgggctaaga
//
LOCUS       DASSIK010000011         2111 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1379862, whole genome shotgun sequence.
ACCESSION   DASSIK010000011 DASSIK010000000
VERSION     DASSIK010000011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2111)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2111)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2111
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1379862"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            406..615
                     /locus_tag="VFI64_00205"
     CDS             406..615
                     /locus_tag="VFI64_00205"
                     /inference="COORDINATES: protein motif:HMM:NF021479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YwbE family protein"
                     /protein_id="HET7241736.1"
                     /translation="MLDGKRKENVQPGAIVRIVEKHNQKTGKLTEGVVKDVLTPSAVH
                     PHGIKVLLESGVVGRVKEIINQHGQ"
     gene            complement(741..>2111)
                     /locus_tag="VFI64_00210"
     CDS             complement(741..>2111)
                     /locus_tag="VFI64_00210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241737.1"
                     /translation="QLANLDMISPRTSSCIDRVNQYKFTNSASSNSNSVNTKSSSQSN
                     FSLDRQVQELKDRVHHDAERVDEAFRVGVEVEACLLDEKGIPVTAEPLIKELAGTTYE
                     IDYEYGACQFEYKTSPVGMNNLDYLNIVFEQFIESLDRFIKKAYKEKEVIPVFLGANP
                     SPEIMKEGLITNKPRYNKLADWQNSLPDVEIEGYNFRAAYVATAIQGFHLHLQGKNPK
                     NTTIMFNHILNIIPSAIVLGANSRLFAGRVYSLHEPRIHLYDQSEQQNSGFPAIPRYL
                     DGIGDYMDYTTSREPKIAKDYFELEKERHDDARIRIGPDSYRVETRIMSVQPTSKSLM
                     AMAEFFIGYLSRAIHEERELRALATLREERMAAVRSGYYAKTHFNIVDTIKAQLDFAR
                     KGLSDLGVNAEFLNILDKRIENRNTPGEYVAKLWSKKFNGSVNETIYEIISDIWQKTK
                     DNQPIT"
BASE COUNT          634 a          385 c          386 g          706 t
ORIGIN      
        1 gataatgtta tattaaagac taccgtaacc tagttacgta gaatatttta caggatttga
       61 tccgtatgtt ctgtcttaat agttgtcaat aactatcaaa aatcctctaa caatttccaa
      121 gtacgaagac ttttttgacc tcatgaatct ttgcaatccg ctataagtct ggaatattat
      181 cccttaaaat tacttcatta tttaaaacaa ttaactattt tgatccaaat gtgattggat
      241 tctggtaaaa acttgaatag gcgctaacaa gaaaacatat gaaaagttta ataaggattt
      301 tcgattcatg gatcttattg tctgtattaa gagggttatc ctagcgagta acctgaataa
      361 aaaatataat caaaaacata ataatctcca agctaaatat agatcgtgct agacggcaaa
      421 aggaaagaaa atgtacaacc cggcgccatt gtaagaatag ttgaaaaaca taatcagaag
      481 acaggaaagc tgactgaagg tgtagttaaa gatgtcttga cgccttccgc cgtccatccc
      541 catgggataa aggtcttact agaaagcgga gttgttggaa gggtcaaaga aattataaac
      601 caacatggtc agtaacaaga atttggtggg accagattta tggtattgtt aatggcaatt
      661 ataatattta cctcgcatac agaaatttaa gaatgtacgg atatgttatg atcggatatt
      721 taattaaata agtttcttgt ctacgtaata ggttggttat ctttagtctt ctgccaaatg
      781 tcagagataa tttcatatat cgtttcgttg actgacccgt tgaacttttt actccacaat
      841 tttgcaacgt attctcctgg agtatttcta ttttctattc tcttgtctag tatattaagg
      901 aattccgcat tgacacctaa atcagacaaa cccttgcgag caaagtcaag ttgagctttt
      961 atagtatcta caatgttaaa atgagttttg gcatagtaac ccgaacgaac tgctgccatt
     1021 ctctcctctc ttaaagtagc aagtgcgcgt agttcccttt cttcatgaat agccctgctc
     1081 aagtagccaa taaagaattc tgccattgcc attaagcttt ttgaggttgg ctgaacagac
     1141 attattcttg tttctacacg ataggaatct ggtcctattc ggattcgcgc atcatcatgt
     1201 cgttctttct cgagttcaaa ataatctttc gctatctttg gttcccgtga agtagtatag
     1261 tccatataat ctcctattcc atcaaggtat ctgggaattg cagggaatcc tgaattctgc
     1321 tgttctgatt gatcgtatag atgaattctt ggttcatgca atgaatatac tcgaccggca
     1381 aaaagtctgc tgttcgctcc aaggacaatt gcagaaggta ttatgtttaa tatatgattg
     1441 aacatgatgg ttgtattctt tggatttttt ccttgtagat gaagatgaaa gccctgaatt
     1501 gctgttgcaa catacgctgc tctaaagttg tacccttcta tttcaacatc aggaagactg
     1561 ttctgccaat cagccaattt attatacctg ggtttgttag ttattagacc ttctttcata
     1621 atttcaggtg aaggattagc gcccagaaag acaggaatta cctctttctc tttgtatgct
     1681 tttttaatga acctatccaa actttctata aattgctcaa atactatgtt gagataatca
     1741 aggttattca ttcctacggg agaggtttta tattcaaatt gacaggcacc atattcataa
     1801 tcgatttcat aggtggttcc tgcaagttct ttgattaatg gttctgcagt cactgggatt
     1861 cccttttcat cgagtaaaca agcctcgacc tctaccccaa ccctgaaagc ttcgtctact
     1921 ctttcagcat catgatgtac tctatccttt aattcttgta cttgcctgtc aagggaaaaa
     1981 ttcgattgag agctagattt tgtattcacg gaatttgagt tggaggacgc ggaattagta
     2041 aatttatatt gattcaccct gtcgatgcaa gaactggtcc taggggatat catatctaga
     2101 ttggccaatt g
//
LOCUS       DASSIK010000012         4269 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1380072, whole genome shotgun sequence.
ACCESSION   DASSIK010000012 DASSIK010000000
VERSION     DASSIK010000012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4269)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4269)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4269
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1380072"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(197..358)
                     /locus_tag="VFI64_00215"
     CDS             complement(197..358)
                     /locus_tag="VFI64_00215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241738.1"
                     /translation="MDCNIVLAKYNMVYFSDLNIAELAKLHYPLHVKNGHSLVIRMSE
                     EKSKVPSGL"
     gene            complement(432..1037)
                     /gene="endA"
                     /locus_tag="VFI64_00220"
     CDS             complement(432..1037)
                     /gene="endA"
                     /locus_tag="VFI64_00220"
                     /EC_number="4.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000214 - tRNA-intron endonuclease
                     complex [Evidence IEA];
                     GO_function: GO:0000213 - tRNA-intron endonuclease
                     activity [Evidence IEA];
                     GO_process: GO:0006388 - tRNA splicing, via
                     endonucleolytic cleavage and ligation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-intron lyase"
                     /protein_id="HET7241739.1"
                     /translation="MSSAEAISSSADFSFTVEGTLFKKGRITIQDKRSQDQLRNKGYG
                     EMERSDYILKPYEALYLMHTNRLKASKGKQPLSFDSLLRVALKFDKNILTKFLIYRDL
                     RSRGYVAKEGFGFGVDFRVYDRGEFEKKAAKYVVFGINEGTNTGVRTLSKILQDINIM
                     GKDAIVAVVERRGEVIYYKLDKMNLAENKNARNQHFAKNEN"
     gene            1093..1611
                     /locus_tag="VFI64_00225"
     CDS             1093..1611
                     /locus_tag="VFI64_00225"
                     /inference="COORDINATES: protein motif:HMM:NF003239.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HET7241740.1"
                     /translation="MKGVNYREPRGMPYVRREYIRGKPQLKIAKFASGQPKNDYDYKV
                     ELIVTEGLQIRHNSLEAARLAANKTMATAGDMSFFSRLTVYPHVVLRENKMIATAGAD
                     RLQEGMRRAFGKAMGLAARVHPHQSIYEAYVTQANLPLAKRGLKVASSKLGCPTTVKV
                     TQLREIKAQEEV"
     gene            2130..3152
                     /locus_tag="VFI64_00230"
     CDS             2130..3152
                     /locus_tag="VFI64_00230"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HET7241741.1"
                     /translation="MAFAEFFTGDAMEMLEKLSRDERYALKYRLLVTSPPYFGQRHYG
                     SSICEIGHETDPESYLDKLTRIFTKARDLLTEDGSLWIVIGDARRNGSKLMIPHRLAS
                     NLVNKNFIFREDIIWYKKNFISSGSTSNLSQAYEFVLFFSKNKNCYANIDRIRILGNE
                     VREAKNKTPSKDMIQYSSLSPNKERILEIRKKINNANLSTRYEDLPTTSEISLAFGYD
                     PEKYCPTCYRKFKRHVTRKRIGDHRHYPIFAVCNPLGKNPGNVWDVPTKAHHGNDHFA
                     IFPEDLIKIIVNFCSKKGDWVLDPFMGRGTSGIVCSVLERNFTGIELYEKNVHLSKSN
                     IASPYS"
     gene            3159..3569
                     /locus_tag="VFI64_00235"
     CDS             3159..3569
                     /locus_tag="VFI64_00235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241742.1"
                     /translation="MYCNTFVDVLLKERILYCAAALLVMTSMKKDFIVARIEAAQDGS
                     PYVFVGFSDPSEYKGDKQVNPLGSNVMAFSSPEDLMKNLPKAMGNISRMMGGGGAADS
                     PTFKISMKEYEDIGIKVGDKVTIEITKSDNNIYT"
     gene            3726..>4269
                     /gene="pgk"
                     /locus_tag="VFI64_00240"
     CDS             3726..>4269
                     /gene="pgk"
                     /locus_tag="VFI64_00240"
                     /inference="COORDINATES: protein motif:HMM:NF012389.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004618 - phosphoglycerate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HET7241743.1"
                     /translation="MLRSISDLDDLQYYGKSVFMRVDFNVSVNDGVIGEDYRIRMAIP
                     TIEYLAKRGAKVILASHLGRPKTRDQTKSLEPVAKRLGEILGNSRVSFVDDCIGNVVL
                     DKIKKLALGDILVLENLRYHQEEENNDSLFSRKLADLADVYVNDAFSTSHRKHASTYG
                     TTEYFDIRLAGFSLKKEVEYL"
BASE COUNT         1357 a          761 c          847 g         1304 t
ORIGIN      
        1 cactaataag tatctcgtga atgacggata ttcatactag tattcatagc aggtaactca
       61 gtaatgaaga aacctaattg catcaaattt atctactaag gatgtttgtc agatagagaa
      121 tcgcagagta aatttgtact ttacttattt ttggaaccct agaaaatttg cagagacgaa
      181 aatattggag atgccattat aagccgcttg gcactttact tttttcctct gacatcctta
      241 tcactaatga atgaccgttc ttgacgtgta atggatagtg taacttcgcc agttcagcga
      301 tattcaagtc agaaaaatat accatgttat attttgccaa tactatattg caatccaaac
      361 agtatatctc cttgaacacc atcaagatat gtatagcaaa cctgtattat tttaactaat
      421 tttgagtcta gctaattttc attcttagca aaatgctgat tccttgcatt tttattttct
      481 gcgagattca tcttatcaag tttataatat atcacttccc ctcttctctc cactactgcg
      541 acaattgcat ctttacccat gatatttatg tcttggagaa tctttgagag agtccttact
      601 ccagtatttg taccttcatt tattccaaac acaacatact ttgctgcctt tttttcaaat
      661 tctccacggt catacactct gaagtctact ccaaacccaa atccttcttt tgccacataa
      721 cctctgcttc gtagatcgcg ataaatcaga aattttgtaa gtatattctt atcgaatttt
      781 aaagccactc tcaatagaga atcaaaactt agtggctgtt tgcccttgga ggcctttaat
      841 ctattagtat gcatcaaata aagtgcttca tagggtttaa gaatgtaatc agatctttcc
      901 atttcgccat atcctttgtt gcgaagttga tcttggcttc ttttatcttg gatcgtaatt
      961 ctgccctttt tgaacaaagt tccttctact gtgaatgaaa aatcagcgga tgaagaaatt
     1021 gcttcggctg aagacataac gaataaatca gagcccctga ccccatttaa gtattaaaac
     1081 agttgacatg atatgaaagg tgtaaattat agagaacccc gtggaatgcc ttatgttaga
     1141 agagagtata ttcgtggaaa gcctcagcta aagattgcaa aatttgcttc tggtcaacca
     1201 aagaatgatt atgattataa ggtagagttg attgtcacag aaggacttca aatcagacat
     1261 aattcgttgg aggctgcaag gctggctgcg aataagacaa tggcaactgc tggtgatatg
     1321 agtttcttct caagactgac tgtttacccc catgttgttt tacgagagaa caaaatgatc
     1381 gccactgcgg gcgctgatag actccaggaa ggaatgagaa gagcatttgg aaaagcaatg
     1441 ggacttgcag ctagagttca cccccatcag tccatatacg aggcatacgt aacacaggct
     1501 aacttacctc tggcaaaacg tggcttgaag gtagcatcca gcaaactagg atgtccaact
     1561 acggtaaaag ttactcaact aagggaaatc aaggctcaag aagaagttta atctaagttt
     1621 agttactggg actctaccaa gcacaaaagc tatcttcatt ctattataaa tatcgttaaa
     1681 tccttatctg gtcttactat agaagagaac tctgtatacc ctctaacatt tggcattcaa
     1741 aagataaatg gtggcaagta tgctcaaatg tttctcaatc tgtactatgg tcttcaaaga
     1801 gattttccca ggttctaact ttttacattg attataaccc attgttttgc tggattactt
     1861 tccatagtca tgaaattgga agaatgggat atgttctctt catttctcat gtgcacatat
     1921 ccgagttaat gtctcatgtg tgcgttaatt cataacaatt ttgtaatttt atggatttct
     1981 gaaattgtgt gcatctgtta gataacaccg agttgtagaa aataggctca tttaatgtac
     2041 tcctatgtag taattaagaa gaattatttt ttggataggc gaaatggtaa ttcacttaaa
     2101 ttgttgtgtt ttctttatat ttcgaagact tggcctttgc ggaattcttt acaggtgatg
     2161 caatggagat gttggaaaaa ttaagccgag atgagagata tgctctaaaa tatcgactat
     2221 tagttacttc tcccccgtat ttcggacagc gacactacgg cagcagcatc tgcgaaatag
     2281 ggcatgaaac agatcccgaa tcatacctgg ataaattgac taggatcttt actaaggcta
     2341 gagacctatt aacagaggat ggaagtcttt ggattgtaat aggagatgca cgacgtaatg
     2401 gcagtaagct aatgatacca catagactgg cgagtaattt ggtgaacaag aattttatat
     2461 ttagggaaga tatcatttgg tataagaaga attttatttc aagtggttct acaagcaatt
     2521 tgtcacaggc ttacgaattc gtattatttt tttccaagaa caaaaattgt tacgcgaata
     2581 ttgacaggat tcggatcttg ggtaatgagg tacgcgaggc caagaataaa acaccttcca
     2641 aagacatgat tcaatacagt agtctatcac caaacaaaga gagaattttg gaaatacgaa
     2701 aaaagatcaa taatgccaat ttgagcaccc gatacgagga cctgccaacc acaagcgaaa
     2761 tttcactggc ctttggttat gatcccgaaa aatattgccc gacatgttac aggaagttta
     2821 agcgtcatgt aactaggaag agaattgggg accacaggca ctatccgata tttgcagttt
     2881 gtaacccttt aggcaaaaat cctggaaatg tttgggatgt tcctacaaag gctcaccatg
     2941 ggaatgatca ctttgcaatt tttcctgagg atctaataaa aattattgta aatttttgta
     3001 gtaaaaaggg tgattgggtt ttggacccat tcatgggtag aggaaccagc ggtatagttt
     3061 gttcagtttt agaaagaaat tttacaggaa ttgaacttta tgaaaaaaat gtccatctat
     3121 ccaagagtaa tattgccagt ccctacagct gatctagaat gtactgcaac acatttgtag
     3181 acgttctgct caaggaaagg atattatatt gtgctgccgc cctattggtc atgaccagta
     3241 tgaagaaaga cttcattgta gctcgcattg aggcggcaca ggatgggagt ccttatgttt
     3301 ttgtaggatt tagtgacccg agtgagtaca aaggtgacaa acaagtgaat ccattagggt
     3361 ctaatgtaat ggcattttcg tcgcctgaag acctcatgaa gaacctgcct aaagctatgg
     3421 gaaatatctc tagaatgatg ggcggaggag gagctgctga ctctccaaca tttaagataa
     3481 gtatgaagga gtatgaagac atcggcataa aagtcggcga caaggttact atagaaataa
     3541 caaaatccga taacaacatc tatacctaat tcatttaatt tccgtattga tatcctcttc
     3601 aagttgcaag ttgtatcgct gatgaagaat tgcaaagtag ttagaaattc agtcgttcac
     3661 tttctcactc gaatgaagga aggtttattc agccactcac aatatgcata tttgacaaaa
     3721 tagtcatgct tcgatcaatt tcagacctgg acgatcttca atattatgga aagagcgtct
     3781 tcatgagggt agattttaac gtcagtgtta acgacggggt catcggagag gattacagga
     3841 tacgtatggc cattccgaca atcgaatatt tggctaagcg tggtgcaaaa gtaattttag
     3901 cttcccactt gggcaggcca aagacacgtg accaaacaaa atctcttgag cctgttgcaa
     3961 aaagactggg ggagatatta ggaaattcaa gagtatcgtt tgtagatgac tgtatcggaa
     4021 atgtagtttt ggacaaaata aaaaagcttg ctcttggaga tattctagtt cttgaaaatt
     4081 taagatatca ccaggaagaa gagaacaatg attccttatt tagtagaaaa cttgcagatt
     4141 tagctgacgt atatgtcaat gacgcattta gtacgtctca tcgtaaacac gcatctactt
     4201 atgggactac ggaatatttt gacataaggt tggcaggatt cagtctaaag aaagaagtag
     4261 aatatcttt
//
LOCUS       DASSIK010000013         2084 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_102070, whole genome shotgun sequence.
ACCESSION   DASSIK010000013 DASSIK010000000
VERSION     DASSIK010000013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2084)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2084)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2084
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102070"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..256)
                     /locus_tag="VFI64_00245"
     CDS             complement(<1..256)
                     /locus_tag="VFI64_00245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241744.1"
                     /translation="MPYYTLVCSTSDIASSTVIDTLINLHYFAKLDKSTFYSKDYPNV
                     QLHLTTKSLLYADGLDEIYPDSDCFIFISQHRSASNIPTLT"
     gene            complement(858..>2084)
                     /locus_tag="VFI64_00250"
     CDS             complement(858..>2084)
                     /locus_tag="VFI64_00250"
                     /inference="COORDINATES: protein motif:HMM:NF019869.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HET7241745.1"
                     /translation="NKIRNDFLYFYPVDSRHSGRDLVPNHLSFFIFNHVAIFGKEFWP
                     KQIVINGSVLMQGKKMSKSLGNIIPLRTAVKEYGADAIRLAMLSTSELLQDADFSFDL
                     VKGIRSKLHEIYKTTLDRATSLRDPMASGIKEDMFQMELEERWLLSRLQHAISETTRS
                     LERLRVRESLQIVLYFMDRDLQWYKKRKKAKKRDPLKSKAFDEFLSIRVRLLAPFAPF
                     ISEEIWEVIDSKGFITSVAWPQVDNGKIDATLEENEDLIENTILDIQKITKVTKIVPK
                     RILIYTASKHKWILYKKILSAMQLESQVNFGDLMKVLVNDNEVSDIAKTDPGLIKKII
                     ADILSYSTEVRKRKLGLESFDEGIPLRDALTLIVEQIGFEETTIDIVSEDQDDRYDPK
                     GKSRFARPFKPALYLE"
BASE COUNT          653 a          403 c          351 g          677 t
ORIGIN      
        1 aagtcaatgt aggtatattg ctggccgatc tatgttgaga aataaaaatg aaacaatccg
       61 aatcaggata gatttcgtcc agtccatctg catatagcaa tgattttgtg gttaaatgca
      121 attgtacatt aggataatcc ttcgaataaa aggtggactt atccaacttt gcaaaataat
      181 gtaaattgat aagagtatct atgacagtag agcttgctat atcagaagtt gagcatacta
      241 gagtatagta aggcatagaa tgccagttta tttgcctcct ccgtatttaa attcatgatt
      301 catgacacat acaggattaa aagtaatagt tgagctattg atccaatcta accattgtgg
      361 ctaccgaagg actaaagcct cagtttccta ataaacttgc aaaatatttg aattcccccg
      421 taacccaagt cggtttttat gtttttggaa cattggaatg agaatattta atctcttgag
      481 attgcacaaa aagtgcacat cgcgcatagg caatttccta taggttcgat gcccacaaat
      541 aaggaaattt tagaattcat cagttcagta acaaagcctt ggagtaccac gaaaaaaatc
      601 agtagcaaca tacgtaacaa cttccattta gactacaagg aatagcttcg gattagtact
      661 tcataatctt atcaaaatac atgttggact gaaacgagat gtaaagaaag taaccatttc
      721 gtcattgaca gattcaatga aaaataaatt tagtcgaaat ctaaaaagct cttcacacaa
      781 tttttttccg atctgtgtta tcttaaaagt atcatgttga cagattcaaa gctaaatcta
      841 acttttatgc aatatgttca ttccaagtaa agggcaggct taaatggcct tgcaaatctg
      901 gacttgcctt ttggatcgta cctgtcatcc tgatcttcag aaactatatc gatggtagtt
      961 tcctcaaaac ctatttgctc cacaatcaat gttagcgcat ccctcaatgg tattccttca
     1021 tcaaaagatt caagtcctaa ctttcgtttt cttacttcag tcgaatagga aagtatgtca
     1081 gcaataatct tcttaatcaa cccgggatca gttttagcaa tatcgcttac ctcattatcg
     1141 ttgaccaata ctttcatcaa atcgccaaaa ttaacctgtg attctagttg catcgcgctt
     1201 aggatcttct tgtaaagaat ccacttgtgt tttgatgcag tatagattaa aattctcttg
     1261 gggacaattt ttgtcacttt tgtaattttt tgaatatcaa gtatcgtatt ttcaatgaga
     1321 tcttcatttt cttcgagtgt tgcatcaatc tttccgttgt ctacctgggg ccaggcaaca
     1381 gaagttatga aacctttact atcgattacc tcccaaatct cttcactgat gaatggagcg
     1441 aaaggtgcaa gtaatctgac tcgaatactc aaaaattcgt caaaagcctt actctttaac
     1501 ggatcccttt tctttgcctt ttttcttttc ttgtaccatt gtagatccct atccataaaa
     1561 tataatacaa tttgtaatga ttctctgacc cgcaatcttt caagagaccg agttgtttca
     1621 gaaatagcat gttgcaatct gcttagcagc catctctctt ccaattccat ttgaaacata
     1681 tcctctttga tcccactggc catagggtct cgaagtgatg ttgcacggtc tagcgtggtt
     1741 ttgtatatct catgtaactt gcttctaatt cccttgacca aatcaaaaga aaaatctgca
     1801 tcttgaagaa gctctgaggt gcttagcata gcaagacgaa tagcatcagc tccgtattct
     1861 ttaacagctg ttcgaagagg tattatattt cctaacgatt tggacatttt tttgccttgc
     1921 ataagcacag atccgtttat tacaatttgc tttggccaaa actcttttcc aaagatagca
     1981 acgtgattga agataaaaaa tgaaagatga ttgggtacta gatcccgacc agaatgtcgg
     2041 gaatctaccg gatagaaata caggaaatca tttctaattt tatt
//
LOCUS       DASSIK010000014         3513 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_299112, whole genome shotgun sequence.
ACCESSION   DASSIK010000014 DASSIK010000000
VERSION     DASSIK010000014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3513
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299112"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(365..2155)
                     /gene="polX"
                     /locus_tag="VFI64_00255"
     CDS             complement(365..2155)
                     /gene="polX"
                     /locus_tag="VFI64_00255"
                     /inference="COORDINATES: protein motif:HMM:NF006375.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase/3'-5' exonuclease PolX"
                     /protein_id="HET7241746.1"
                     /translation="MSKNSEAAKILREIAFILQTEEEKESEPNAIFKVRSYNRAADEI
                     QNLSFDIGDIYKRDKLNGLLKIPSIGKAIASKLEEYITTGKIHYYEELKKKMPVDVSQ
                     FFGLEGIGPKTIKTLYSNLGIKNISDLEKAATEGKIRSIPGFSKKKEELILKKLQFFK
                     KGGGRLLIGEVFPLVKRIEERLSKFRGVKQAVAVGSFRRMKETIGDIDYVVSVVSEKE
                     GDKIIDYFVNMPEVKEVSGRGSAKAFVKLNIGIDADLLVVPAESFGAALQYFTGSKEH
                     GVSIRKIAISKGLRLNEWGVFDEQKNRIAGSTEEGVYQLLGLDWIPPEMRENRGEIEL
                     AKIGKEEENARLSQLIGYDDLKGDLQVHSDSTDGTMSIEEMALYARDKFGLNYIAISD
                     HTKSLRLTNGLDEQQLINQAHRIEEINDEINKSSNKNKNFRILSSAEVNILKDGSLDI
                     SDNVLDKLDIVGAAIHSNFALPIEVQTERLINAAQNSSVDIIFHPTGRIINRREGYPV
                     NISKLIDVAKDSNTILEIDAHYDRLDLKDEYIRMAIENEVKLVIDSDAHHPSHYAFLQ
                     FGIGQARRGWATKSDILNTLSAKELLNSLK"
     gene            2323..>3513
                     /locus_tag="VFI64_00260"
     CDS             2323..>3513
                     /locus_tag="VFI64_00260"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
                     /protein_id="HET7241747.1"
                     /translation="MNLSELVDTFELMEATKSRLALTDYLVSLIHNTPSTIIDKVIYL
                     IQGKLRPDYEGIELGIAEKMIIRALSCALSVDISSIEEAYRQTGDLGDAARKIISSKE
                     NKITTRFTVEHIYSTLEVIARTSGAGSQELKVNYIVELLNHSTSREARYIIKFIMGTL
                     RLGIADYTVMDALAIAFTGNKSNRKILEDAYNVCSDLGAVAKVVATKGIEAVKTIQIT
                     LFKPIRPMLAERVRTAPEALSRMEGGVAAAEYKLDGERIQVHLGKELYDGDNNIRDGG
                     NTSSKVELFSRRLEKITHQYPDVINAIVSSLKKVAKEAIFESEVVAIDPQTLELRPFQ
                     ELMHRRRKHEIDKTIEQYPVRLNIFDVLYLDGDDKTSLPYNQRRKILERILQQVATKT
                     NDEVN"
BASE COUNT         1095 a          639 c          619 g         1160 t
ORIGIN      
        1 ttaaagtcaa ggaattagaa gttattgaag gtgcatcaca tttgtttgag gaagaaggta
       61 aaattgaaga agttgggaat gttgcagcga ggtggctaga aggtactatg aaatagttac
      121 gaatactaaa cttattttta gaggctgttg ggatcaagtt aagctagaat cggatatttc
      181 attcacaatt gagttcccat taacagccga caagaatctt gtagttagta tcattatttc
      241 gtttcctttg acaaccttgg ataagacctt gtttttagtt acttacatga tcgaggaaat
      301 tatttgcatc ggtgaagaat ttagaattta aggcgaagta gtcatatatc tatacacata
      361 actattactt gaggctatta agcaattctt tagctgacaa tgtattcaat atatctgact
      421 tcgtagccca acctcttcta gcttgtccaa ttccaaattg caggaaagca taatgtgaag
      481 gatgatgagc atcagaatca attaccaatt taacttcatt ttcaattgcc attcttatgt
      541 attcatcctt taaatcaagc cggtcatagt gtgcgtcaat ttcaagaatt gtgtttgaat
      601 cttttgccac atcaatcaac ttggatatgt tgacaggata tccttctctt cgattaataa
      661 ttctgcctgt cggatggaat ataatgtcaa cactagaatt ttgagctgca tttatgagtc
      721 tctcggtctg tacttcgatg ggtaaggcaa aattagaatg aattgcagcg cctacgatgt
      781 ctagtttgtc caatacatta tctgaaatat caagtgatcc atcttttaga atatttactt
      841 ctgcggaaga tagaatgcgg aaattcttat tcttgttact acttttgtta atttcatcat
      901 ttatctcttc aattctgtgt gcttgattta ttagttgctg ttcatccagt ccgttagtaa
      961 gtctcagact tttcgtatga tctgagattg caatataatt caatccaaac ttgtctcttg
     1021 catatagagc catttcttct atagacatcg ttccatctgt gctgtcgcta tgaacctgta
     1081 aatcaccttt caaatcatcg taccctatta attgtgagag tcttgcattt tcttcttctt
     1141 tccctatttt tgcaagttct atttctcctc tattttctcg catctctgga ggtatccagt
     1201 ccaggcccaa taattgatat actccctctt cagtggaacc agctattctg ttcttttgtt
     1261 catcaaaaac gccccactca tttagacgaa gtcctttaga tatagctatt tttctaatag
     1321 atactccatg ttctttgcta cctgtaaaat attgcaaggc tgcaccaaaa ctctctgcag
     1381 gtacaactag taaatctgca tcaatcccaa tgtttaattt gacaaatgct ttagctgagc
     1441 ctctgccact tacctcttta acttctggca tatttacaaa ataatcaatt attttatctc
     1501 cttctttttc tgatactacg gacaccacgt aatcaatatc tcctatagtc tctttcattc
     1561 gtctaaacga accaacagcc accgcttgct ttactcccct aaattttgaa agtcgttcct
     1621 ctattcgctt taccaatgga aagacttcgc cgattagtag tctccctccg ccttttttaa
     1681 agaactgtag cttctttaga attaattctt cctttttttt ggaaaaccca ggaatacttc
     1741 taattttgcc ctcggttgct gccttttcta aatcggatat atttttaatt cccagattac
     1801 tataaagagt ttttattgtt tttgggccta ttccctctaa accaaaaaac tgacttacgt
     1861 ctaccggcat cttcttcttc aattcttcat aataatgaat cttaccagtt gtgatatatt
     1921 cttcgagttt tgatgcaata gcctttccaa tcgaaggtat ttttagtaat ccatttagct
     1981 tgtctctttt ataaatgtcg cctatatcaa aagacaaatt ttgtatttcg tctgctgctc
     2041 gattataaga tctaacttta aaaattgcat ttggttcact ttctttttct tcttccgtct
     2101 gcaagataaa agctatttca cgaaggattt tggcagcttc agaattcttg ctcattgcta
     2161 tatattttcc ctatgtagca ataccagact taaaccaaac gatttgatga atacattgaa
     2221 tgtgtaatta agtcctacga taaatagtca tagtggtatt tgtgtgttga tcgatgagtt
     2281 atgacatatg cattttatag tatatgctag atcagatcaa tattgaatct ttcagaattg
     2341 gtagatacat ttgaattgat ggaagcaacg aaaagtcgat tagctcttac agattatctt
     2401 gtgtcattaa tccacaatac accttcaact ataattgata aggttatata tcttattcag
     2461 ggtaagctac gtccagacta cgaaggaata gaactgggta tagctgagaa gatgataata
     2521 agagcacttt cttgtgccct aagtgtagac atatcatcaa tagaggaggc atatagacag
     2581 actggagatt taggcgatgc cgctagaaaa ataatatcgt caaaagagaa taaaataaca
     2641 acaagattta cagtggaaca catctattcc acattggaag taatagcaag aacttctggg
     2701 gcaggttctc aggagttaaa agtcaattat attgttgaac tcctaaatca ctcaacatct
     2761 agagaagctc gttacataat aaaattcatt atggggactt tgagattagg tattgcagat
     2821 tatacggtaa tggacgcatt agcgatagca ttcacaggca ataaatcaaa tcgaaagatt
     2881 ttggaggatg catataatgt atgcagtgac ctaggagctg tggcaaaagt tgtcgcaact
     2941 aaaggtattg aagccgtaaa gaccattcaa ataactttat tcaaacctat cagaccgatg
     3001 ctagcagaaa gggtaagaac agctccggaa gctctcagtc gaatggaagg tggcgtagca
     3061 gctgcagaat acaaattaga tggtgaaaga attcaagttc atttaggaaa ggaactatac
     3121 gatggggata ataatattcg agatgggggc aacaccagta gtaaagtaga actattctca
     3181 agacgacttg aaaagatcac tcatcaatat ccagatgtca ttaacgctat agtaagctcg
     3241 cttaaaaaag tagcaaagga agcaattttt gagagtgaag tagtagcaat cgacccccaa
     3301 actttggaat tacgtccgtt tcaagagctg atgcatagaa gaaggaaaca tgaaatagat
     3361 aaaacaatag agcaatatcc tgtaagactg aacatttttg atgttttgta cttagatgga
     3421 gatgataaga cctcattacc ctataaccaa aggagaaaga ttttggaaag aattctgcag
     3481 caggtagcaa caaagacaaa tgatgaagtg aat
//
LOCUS       DASSIK010000015         2629 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1183626, whole genome shotgun sequence.
ACCESSION   DASSIK010000015 DASSIK010000000
VERSION     DASSIK010000015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2629)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2629)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2629
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1183626"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            474..1787
                     /locus_tag="VFI64_00265"
     CDS             474..1787
                     /locus_tag="VFI64_00265"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HET7241748.1"
                     /translation="MKMRFGFAFALTLTILLTSLLVLSTTLLTLLTAYAQEEFRQREF
                     SENGDPQLADSHLKVEEVVGGLDTPTTMAFLGPNDILVLEKDKGTVQRVVNGKILGEP
                     LLDVNVANSVERCMCGIAISKHDSKTYVFLYYTEINGKDGEDRQGKEPSANRLYRYEL
                     VGNKLVDPLLLLDLPANPGPRHNGGAIIIGPDKNLYVPIGDVDGSFREQDTETVTQNY
                     NDGVGPDGRSGILRITQDGQPAGPGILGDSLPLSLYYAYGIRNSFGLGFDPVTGNLWE
                     TENGPGEGDEINLVEPGFNSGWQQVHGLAKSTKGFDPKDLVEFNGKGHYRDPELVWQN
                     TVGPTALLFMTSNKLGSQYVNDMFVGDVHNGRIYHFDLTEDRTHLVLPPELAGKVVKN
                     PNAAGLDQIIFGEEFGGISDLKIGPDGYLYAVSVGLGKIFKIVPA"
     gene            1929..2507
                     /locus_tag="VFI64_00270"
     CDS             1929..2507
                     /locus_tag="VFI64_00270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241749.1"
                     /translation="MIIPLIVMTVLESVFFTIILQLGYGQNEINNWQTYIDPDKRFTL
                     FYPPGWTTKGKENFLSSIDLTLTNPNSTKPFQVTITYIVNDLSLNYTGNEIIVPENNL
                     RILEGQLKGAYQLYTFVSKGSPAYTVYGFPTASDIVDYTKHNGQNGRLLNVLGVVKGK
                     SLFLLSYSNNKQGFYKLLPVVSEITKSIVILK"
BASE COUNT          837 a          456 c          550 g          786 t
ORIGIN      
        1 aatctccttt ccagtatagc cagatacagt tccttgtact gcaagaataa tgcagatgcc
       61 agatataatg acagaaacag aaattctacg gtatatatta aaaaccatta attttttcct
      121 ggccttgtta tgagaactcc cgatttatac ttgaaagtaa tcttttttag actaaatata
      181 gaaaatcaaa tctacttcat tctacagcgt cttaatctta acctcgtgtc gtcaagtata
      241 tcatcataat ttgttgtttc cttcaccaga gaaggtcata tgcttgagca gttcttaatg
      301 aagtaatgag tttatcgtat ttcgaggata ttgccaaata atcatgttta tcagagaata
      361 cagaagactg aatatattcc gatgttcttt ttgaaggttt gtcgggatta ccctgacttg
      421 attaggtgac tgtgtgaacg tctcatagta taaattacgg aattgtgggg agaatgaaga
      481 tgcggtttgg atttgccttc gctcttacat taaccatttt acttacttca cttctggtct
      541 tgagcacaac acttctgacc ttactaactg cttatgctca ggaagaattc agacagcgtg
      601 aattctcaga aaatggggat ccacagctag ctgactctca tctaaaggta gaggaggtgg
      661 taggtggact agatacgcct acgaccatgg catttttagg accaaatgat atcttggttt
      721 tggagaaaga caaggggact gtccagagag tagtcaatgg caagatatta ggcgaacctc
      781 tgttggacgt aaatgtagcg aactctgttg aaagatgtat gtgtggaatt gcgatatcaa
      841 aacatgattc aaagacctat gttttcctgt attatactga aataaatgga aaagatggtg
      901 aagatagaca gggtaaggaa ccaagcgcaa atcgcttata tagatatgaa cttgtgggaa
      961 acaaactcgt agatcctctc ttgctgttag atctcccggc caatccggga cctagacata
     1021 atggtggtgc tataattatc ggccctgaca agaatctgta tgttccgatt ggagatgttg
     1081 atgggtcatt tagagaacaa gacacggaaa cagtaactca aaactacaac gatggagtcg
     1141 ggcccgatgg taggagtggt atactcagga taacacagga cggtcaacca gcaggaccag
     1201 gaattctggg agattccctt cctttgagcc tgtattatgc ttacggaata agaaatagtt
     1261 ttggtcttgg atttgatccc gtaacgggta acttatggga aaccgaaaac ggaccaggag
     1321 aaggtgacga aataaatctt gttgagccag gatttaacag cggctggcag caggtccatg
     1381 gactggcaaa atcaacaaag ggatttgacc caaaagacct agtcgagttc aacggaaagg
     1441 gtcattatcg ggatcctgaa ttggtatggc aaaatactgt tggtcctact gcattattgt
     1501 ttatgacatc aaacaagctg ggttcacaat atgtcaacga tatgtttgta ggagatgtcc
     1561 ataatggtag aatttatcat ttcgatttga ctgaagacag aactcatcta gtcttgcccc
     1621 ctgaacttgc aggtaaagta gtaaaaaacc caaatgcagc tggactcgat caaataatat
     1681 ttggagaaga atttggcgga atatcagatc taaagattgg gccagatgga tatctttatg
     1741 ctgtttccgt agggcttgga aaaatcttca agatagtccc agcttaaacg aagatatgaa
     1801 agcgcttttt agttcccaag ccttgaaatt tttttcaaga ccatatcgat ctagaacaaa
     1861 cagaaaatga gaatctattt tatataattt cgaatatgct gaaaggtgtt aacttgttgt
     1921 taagtatatt gattatacct cttatagtaa tgaccgtttt agaatctgtc tttttcacaa
     1981 ttattttgca acttggatac ggacaaaacg aaataaataa ctggcagact tatatcgatc
     2041 ccgataaaag gttcactttg ttttaccctc ccgggtggac tacaaaagga aaagagaact
     2101 tcttgagcag tattgatttg acgttgacca atccaaattc tacaaagcct ttccaagtta
     2161 ccattacata tattgtaaat gatttatccc taaattacac aggaaatgaa attattgtgc
     2221 cagaaaacaa tttacggata cttgaaggac aattgaaagg ggcgtatcaa ctatatactt
     2281 ttgtaagtaa aggttcgcca gcttatactg tatatggctt tcctacggca agcgatattg
     2341 tggattatac aaaacataac ggacagaatg gccgccttct aaatgttctt ggcgttgtga
     2401 agggtaaaag tttattttta ttatcttatt cgaacaacaa gcagggattc tacaagttac
     2461 ttccagttgt ctctgaaata acgaagtcaa tcgtaattct aaagtaatca agtttagtga
     2521 ataggtggcc ttaaagcatt tcacgttgta atgatcgata aatgctgtat ctccacttta
     2581 aagtcctgtc aggttttcag ttaggagtca aacaaattca atgtttaat
//
LOCUS       DASSIK010000016         2008 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_102379, whole genome shotgun sequence.
ACCESSION   DASSIK010000016 DASSIK010000000
VERSION     DASSIK010000016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2008)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2008)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2008
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102379"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            705..1922
                     /locus_tag="VFI64_00275"
     CDS             705..1922
                     /locus_tag="VFI64_00275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241750.1"
                     /translation="MTASLVVFFTIEVAEVITPAEAFDLRHSTYISVKTHYLNETRNL
                     SHNIDDSVYSQVASSGDNVYVVWEQSVRGPNAKNYDIFFMVSNNGGINFSDPVDLSNN
                     KGFSEHPQISATENNVYVLWVDDSNGTRQILFRKSVDGGENFDHIMKLSKNISSSYNA
                     ELATFGSSVIAVWNELEIQKGNMILLRESKDGGFSFENIKELGASDRQSYPKIAAYKD
                     QKYVTWNTNGTNNQTRQILLSKVIDNVHNLPIMQKTIARYLDDGESHVTALDRNVLVF
                     WTDGNAQGHKNLYYTRSTNYGNEFGDIVDISQSFNDSSNVETAFSDSNLYVVWQEGVS
                     GNQEIFIRNSSNGGVTFGQAKNISNNRGTSECPSISISNNKLHIVWEDDTLGNHEIYY
                     KSMYGNYLARPTS"
BASE COUNT          666 a          375 c          381 g          586 t
ORIGIN      
        1 tgcccacatc tagtatattg tgcttgatgt tattaagatt ttaagcaatt tttaataatg
       61 tctaatgcgt aataatgacg actccgtcaa atcgtgtgaa caattgatgc gatgggattg
      121 ggccagggtc ggccatcgcc acagaatctc catcctggtc catcaataat ttacctttaa
      181 ctatcattat ctatcaggat atatttttaa taattacgtg atcgtatgat atctaacgac
      241 gaatgtattc aagtatgatg ggctaggact tcttaccact cattgcttgg cacatcatcc
      301 atgactttaa gaatcttcga aaaggaaccg gtatcgtcat ggcgccctct ggacccgtac
      361 aaaaatcgtg catcccatat gcctctaata tcgtcttgaa tggttctaca ggcatcaaac
      421 tgaccattct ttgtgtatca ggttctaacg ttacataatc ctttcaaaaa tttatactac
      481 tctatttccg tttcaagttc tacgcctgcc tagttatttg ttggcttggg caacaacaca
      541 aatagattcg aattattaat aattcgaatc gattattcct ctttaccccg attctgtctg
      601 aagtcgccag aaaagatgta aagagcccat gggcgcatat atcgctttat attattaaac
      661 tccacgatat attagaaata ttggattcca ttttctcctt gtttttgact gcctccttgg
      721 ttgtattttt cactattgaa gtagctgagg taatcacgcc agcagaagca ttcgatctca
      781 ggcattcgac ctatatctct gttaaaacac actatttgaa cgagacgcga aacctgagcc
      841 ataatatcga tgattcggtc tattctcagg tagcatcttc tggagataat gtatatgtag
      901 tttgggaaca gtctgtaaga ggcccaaacg ccaaaaacta tgatatattt ttcatggtga
      961 gtaataatgg aggaattaat tttagtgatc cagtagattt gagtaacaat aaaggattct
     1021 ctgaacatcc acaaatatcg gcaacagaaa acaatgtcta cgtattgtgg gtagatgaca
     1081 gtaatggaac gcggcagatc ttattcagaa aaagtgttga tggaggagaa aactttgatc
     1141 atattatgaa attgagcaag aatattagta gttcctacaa tgcagaatta gctacattcg
     1201 gatcaagcgt aattgcagta tggaacgaac ttgagattca gaaaggaaat atgattttat
     1261 tgagagaaag caaagacgga ggatttagct tcgaaaacat aaaggaactt ggagcgtccg
     1321 atcgacaatc ttatccaaaa attgcagcct acaaggatca aaagtatgtg acctggaata
     1381 caaatggaac caataatcaa actcgtcaaa tactactatc taaagtaata gataacgtcc
     1441 ataatcttcc catcatgcaa aagacaatcg caagatacct agacgacggt gaatcacacg
     1501 ttactgccct tgatcggaat gttttggtat tttggaccga tggcaacgcg caaggtcaca
     1561 aaaatcttta ctacacacgt agtaccaatt atggtaatga gtttggagat attgttgaca
     1621 tatcccaaag ctttaatgac tcatcgaatg tggaaactgc atttagcgat agtaatctat
     1681 atgtagtatg gcaagaaggc gtatccggaa atcaagaaat cttcataagg aatagtagca
     1741 atggtggagt cacatttggc caagctaaaa acattagtaa taacagagga acttcagaat
     1801 gtccttcaat atctatttct aataacaagt tacatatagt atgggaagat gataccctgg
     1861 gaaatcacga aatatattac aaatccatgt atgggaacta tctggcccgc cctacatcat
     1921 gaaattagaa ctacacctgg agaatacagg agaaagcgca ctaagcactt caatctacaa
     1981 aaggaataat tttaattagg ctcaatga
//
LOCUS       DASSIK010000017         2016 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1284947, whole genome shotgun sequence.
ACCESSION   DASSIK010000017 DASSIK010000000
VERSION     DASSIK010000017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2016)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2016)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2016
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1284947"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..450
                     /locus_tag="VFI64_00280"
     CDS             <1..450
                     /locus_tag="VFI64_00280"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HET7241751.1"
                     /translation="MDRIGLILYNLGNVKDAITYFDKSLAIDPNNTATLNTKGLALGI
                     MGNHTAALDSFDKALLIDPKSLDAYVNRGTALGILGKYRDALTSIDKALAIDPNNTAA
                     LTVKALTLYSAGITTEAKGYLDKVLEIEPNNFFAFSLRMKIDNTMKK"
     gene            complement(544..1893)
                     /locus_tag="VFI64_00285"
     CDS             complement(544..1893)
                     /locus_tag="VFI64_00285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241752.1"
                     /translation="MIDRSFVAIFVTLSILSGLLYHLNSNTVLAVSMPSFVDPFTTSQ
                     SLPTYIQDEVCNDGVDNDRNGLVDENCGSDSESITKLVEGISRDETSINNPLPQPESS
                     INEQLPEQEICNDNQDNDGNGMVDENCGVSNNNDGNQNTVIPEQEICGDLVDNDGNGL
                     ADEMCEINTTPNTDGSNPPISDNGVDTNPSNEAKTDKFGIRMLYPSKPNGEQWYIRAD
                     HPEKDPQFRPQVPLSKNSDGSFKVTEGKIRMGVWPSTGNHPEKITTYNEKELEKKGYM
                     ESPNDWRNVEITGYVKFNKGVNYDNFAWYARGGIHTNGKECEGTAYKGQLYYSGKTRF
                     AKEQWFVSYVFSPYKQSMGSMNGKWIGFKTAMYNVEKNGHLAVKLEIWLDKSNDGNWQ
                     KVYDYIDDGGWGNDGQACGGRPDQIISWGGPLAAFRWDNADDVDIKDFSVREILPNL"
BASE COUNT          589 a          442 c          347 g          638 t
ORIGIN      
        1 atggatagaa taggactaat actttacaat cttggaaacg taaaagatgc aataacttac
       61 tttgataagt cattagcgat tgatccaaat aatactgcta ccctgaacac caaaggtttg
      121 gcactcggca tcatgggaaa ccacactgcc gcattagatt cctttgataa agcattactg
      181 attgatccta aaagcttgga cgcttatgtc aatagaggta ctgctcttgg cattcttggg
      241 aaatatagag acgctttaac atcaatcgac aaggcactgg caatagatcc caataacacc
      301 gcagctctga ctgttaaagc tttgacacta tatagcgcag gaattacaac tgaagccaaa
      361 ggatatttag ataaagtttt agagatcgaa ccgaacaact tttttgcttt cagtttaaga
      421 atgaaaattg acaacacaat gaaaaaataa cgaagaaaca caagatccta ctgatctcac
      481 ttgtatgatc agaacacgac agacggcata attttcctct taaaaaattt gtcaaccacc
      541 gaatcagaga ttgggtagta tttctctcac actgaaatcc tttatgtcta cgtcatcggc
      601 gttatcccat ctaaatgcag ccaatggtcc accccaagat ataatctggt ctggtcgtcc
      661 accacacgcc tgtccatcat taccccaacc gccatcatca atgtaatcgt agaccttttg
      721 ccagtttcca tcattggatt tgtctaacca tatttccaac ttgactgcga ggtgtccgtt
      781 cttctcaaca ttatacatgg cagtcttaaa tccgatccat tttccattca ttgaacccat
      841 tgactgcttg tatggtgaaa agacgtagct gacaaaccat tgctctttgg caaatctagt
      901 ctttcctgaa taatacagct gtcctttgta tgcggtgcct tcacattctt tcccattggt
      961 atgaattcca cctctggcat accacgcaaa attatcataa ttgacacctt tgttaaactt
     1021 gacataacca gtgatctcta catttctcca atcattaggc gattccatgt aacctttctt
     1081 ttccagctct ttttcattat aggtagttat cttttctgga tggttgcctg ttgatggcca
     1141 aacacccatt cttattttac cttcggtgac tttaaaagaa ccatctgaat tcttagaaag
     1201 tggaacctgc ggcctaaatt gaggatcttt ctcgggatga tcagcgcgga tgtaccattg
     1261 ttccccattt ggcttcgaag gatagagcat tctaattcca aatttatcag tttttgcttc
     1321 attagatgga tttgtatcta cgccgttgtc agatatgggt ggatttgaac cgtcagtgtt
     1381 cggcgtcgta ttaatctcgc acatttcatc agcaagtcca tttccatcat tatctactaa
     1441 atctccgcag atttcctgtt ctgggattac cgtattttga tttccgtcat tattgttgct
     1501 gaccccacaa ttttcatcca ccataccgtt tccatcgtta tcttggttgt cattgcatat
     1561 ctcttgttct ggtaactgtt catttatgga actttcaggt tggggtaatg gattattaat
     1621 actagtttca tctctggata taccttcaac gagctttgtt atgctttcag aatcagagcc
     1681 gcaattctca tccacaagtc catttctatc attatctaca ccatcgttac aaacctcatc
     1741 ctgtatataa gtaggaagtg attgagaggt ggtaaaagga tctacaaatg aaggcataga
     1801 gaccgcaagt actgtattac tatttaggtg gtataaaagt ccagataaaa tgctaagtgt
     1861 aacaaatata gcaacaaaag aacgatctat cattcacaca actggaactg atttccaagc
     1921 atttatgata gagcgtaatt tttacttgga ctaaggctct ggcgaatcaa tcgtaaacca
     1981 gttcttacct taaccacagt aaccttgtaa gataat
//
LOCUS       DASSIK010000018         2066 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1183943, whole genome shotgun sequence.
ACCESSION   DASSIK010000018 DASSIK010000000
VERSION     DASSIK010000018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2066)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2066)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2066
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1183943"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            157..480
                     /locus_tag="VFI64_00290"
     CDS             157..480
                     /locus_tag="VFI64_00290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241753.1"
                     /translation="MTNPDETTKFDITETGPDTIEARGSDGEIISGMTWGEFEKRIAQ
                     STEFREALEMQHLDRNNTNYEQLFDEFLKDYIRKVDANPLLLVYKNQEYIMAKGTNPS
                     EDSKK"
BASE COUNT          713 a          389 c          360 g          604 t
ORIGIN      
        1 cgaacacaat gatatcttca aactaataga taaacaaatt tggactagat atgcagcctt
       61 tctccagtat catcaaagag ccgcaaaatt gtcgccaaaa taggacaagt tcctaaaacc
      121 agacaatctt attagagatt attggaggtc taaggtatga ccaatccaga tgaaactact
      181 aaattcgaca ttaccgaaac tggccctgat actatagaag caagaggttc tgatggcgaa
      241 ataatttcag gtatgacttg gggtgaattt gaaaagagaa ttgcacaaag cacagaattt
      301 cgcgaagcat tggaaatgca acaccttgat cgcaataata caaactacga acaattattt
      361 gatgagttct taaaagacta cataagaaaa gttgatgcta atcccttact gttagtatat
      421 aaaaatcaag aatatattat ggcaaaaggc acaaatccat cggaagattc taagaaatga
      481 aaatctatga gcctagtgta ctatagtact atagtttata gtctacgcac accagttttt
      541 tatatgacta gttgtaaccg ttgcggccaa gacctaattt gcattggatg cagacaccct
      601 caagagcaat gtacatgcgc gagcccagaa aagccaaaga atgaagcgcc ataattcata
      661 atcttccttc cgctggcgga ctaataccta aagctaacgc tgctctattc ttacttgata
      721 ggagaggaag attgagcaaa cacaatccca aaacaaccac atatgacaat taagcagtat
      781 cacaaatcac gacctagaga tgtttactcc ttgctatgga actctaaaga agcacagaag
      841 atacttacta gttagaaggt atttggtgct gatagtgtta acataacaaa cccaatagaa
      901 gttcaataac tggattattt tccaaatcaa tctccataca agacatcatt tggtatttca
      961 gacttcttag atttcaaata tgaaaaactc caagagttat caagaacggt aaaatgtcct
     1021 aacctagcag atttagaaag aagagttaat ccttacatat ctattcgcag tcatctttat
     1081 aatgcctaca tcgctagaac atcctgctga tatggtcact tttgtgaaaa cgatgctgtc
     1141 gcattagtaa agttaggtta attcaaaccg ttgatgtgcg gcagtttctt ctttatcatt
     1201 ttgaattaca aagtccatta gttatgaaat tatgaattaa ttgtgcagaa gtttaagctc
     1261 aaagagaaag aaagagatac tgtcctatat gctacaatcg attgaaaatt cagtaggtat
     1321 gagagtgggt aacatcatct agtctatcgc atctaccaca cttccacgaa acatgctcta
     1381 aacatacatt gcatagtgaa gttactttca aactgtttcc acaccctctg caatattcct
     1441 tattatacag gctcatcgtg aatttacaat tacttatgta gaactctcct attaacggaa
     1501 gacgtccgca aagaaaccat ttagtggaga tataaaccag gtattgccgt aataagacag
     1561 aataagtcaa tatcacgacc aagataattt ttaagtaaat caatccatta aattctcaag
     1621 attaggatta acaggaccac gacaagtggg gagaattagc cagccccgtg tttggctttc
     1681 tccccgtgat gttcggtgaa cggagccgaa actcgaacat tcaataattt tatatcgact
     1741 tcgtgtctat ttacttcttg taaacgtgat tgcttagtct tcataacagt actttacaag
     1801 attctatgta ccctgtcatt gttggatatt tatgaaaaaa atatttagat caattgtaga
     1861 tgtcatgacg aaaacattat ccatgtcggc attgggattg gtcctatatt gtcctgagtc
     1921 tatatcaaca caataactag cgtcctttct gcttctgaat tgaaattttt aaaggaatct
     1981 tggatatctg gcaatccttt gggtatttac ccataattgt taagtaaagt atagttcgat
     2041 tgtacccgat ggtaacgcca atattc
//
LOCUS       DASSIK010000019         2819 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_596494, whole genome shotgun sequence.
ACCESSION   DASSIK010000019 DASSIK010000000
VERSION     DASSIK010000019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2819)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2819)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2819
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_596494"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..228)
                     /locus_tag="VFI64_00295"
     CDS             complement(<1..228)
                     /locus_tag="VFI64_00295"
                     /inference="COORDINATES: protein motif:HMM:NF012512.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HET7241754.1"
                     /translation="MNNRNRIYQESEIPSLKNILDARSLMDDEVRKTPLTESHTFSKM
                     IGSHIFLKMESMQKTGSFKVRGACSKVNSLTA"
     gene            complement(260..1198)
                     /locus_tag="VFI64_00300"
     CDS             complement(260..1198)
                     /locus_tag="VFI64_00300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241755.1"
                     /translation="MRVPLKGSDKFCLELNSAYSKMEQVYFNSIKSSLKTSAIKVMLG
                     DGTITDSVTFDPQETVRYFNILGGRLKGWSNSGVSKSNTEDLHRVSYQIYQQVEKYYI
                     SVHFEIQFHSLKFYRVDKRVLEIQKEIHELSRKSIEIHQSLAKTGNEIVVRELGNMGY
                     GDLPFEDLLEKMLSDQIISSQLEDKAKEVRSKYPELREVEIKERALAAEINDYIMEVY
                     TIDPVVIDYNKLMQGEVGVALYMDFEVVNNMKSKVRQAYVNFENIKAESGKSIINSLE
                     KLTGIISDMEKWRREELSLNTASQNTSPESEFKDRS"
     gene            1347..2183
                     /locus_tag="VFI64_00305"
     CDS             1347..2183
                     /locus_tag="VFI64_00305"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HET7241756.1"
                     /translation="MDPNEKGEDKRKKISIKKDPSEDLDSPFLKLSHYEINSSHDTSQ
                     MHDVTTLISQTQKRLWNALKRRYRYSSTLDPAQNYLRKHADSKICLAVLYIDLVGSTN
                     LCMTISVDKLATIIRAFTYEMSSVVQTYNGFVLKYVGDAVISFFPSASSKYVACETAV
                     KCGMSMLSIIRNGLNPILNQYDYPELSAKIGIDEGENAVVQYNTDKNSPLDILGYCMS
                     VSAKMTSLTEPNKITIGDDVYNVLHPELKEKFVQVSYSEKEWKYVNKRTGQLYKLHTL
                     NL"
     gene            2296..2550
                     /locus_tag="VFI64_00310"
     CDS             2296..2550
                     /locus_tag="VFI64_00310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HET7241757.1"
                     /translation="MPTAYILVNCTLGSEEKIITEIAKLPDVKEVRGTYGVHDVFVKV
                     KSDNTESMNHTITNRIRKVPGITSTVTLVVIEEQGGKEIT"
     gene            complement(2553..2762)
                     /locus_tag="VFI64_00315"
     CDS             complement(2553..2762)
                     /locus_tag="VFI64_00315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241758.1"
                     /translation="MELTKINLQVLIIFWWVGAIAAGSALSFPIYQHYLTVGIVGWTI
                     IGVSTGLIIYEIKRIKEEDKKKNIS"
BASE COUNT          881 a          539 c          479 g          920 t
ORIGIN      
        1 ggcagtcaag ctgtttacct ttgaacaggc gcccctgacc ttaaaagaac cggtcttttg
       61 catcgactcc attttcagaa agatatgtga gcctatcatc tttgaaaagg tgtgtgactc
      121 tgttaacggt gtttttctga cctcatcgtc cattaaactg cgagcatcta agatattttt
      181 taatgaaggt atctcagact cctgatatat tctgttcctg ttattcaatt actaatgatc
      241 gaccctatga tgaacactat tatgacctat ccttaaattc tgattcagga gatgtattct
      301 gagaagcagt gtttaaagat agctcttcac gccgccattt ttccatgtca ctaattatgc
      361 ccgttaattt ttctagagaa ttaattatgc tcttgccgga ttccgctttg atgttttcaa
      421 aattcacata tgcttgtctt acttttgact tcatattatt tactacctcg aagtccatat
      481 atagagcgac tcctacctct ccctgcatca atttattata gtcgattacg accggatcga
      541 ttgtgtatac ttccatgatg taatcattta tctcagcagc caacgctctc tctttaattt
      601 ctacttccct tagttcgggg tacttactcc tgacttcttt tgctttatct tccagttgag
      661 aagaaataat ttgatccgaa agcatttttt ccagtagatc ttcaaatgga agatcaccgt
      721 atcccatgtt acctaattct cgcacaacaa tttcgttacc agttttggct agcgattgat
      781 ggatttcaat actttttctt gataactcgt gaatttcctt ttgaatttct aggacccttt
      841 tatctaccct ataaaacttt aatgaatgaa attgaatctc aaagtgtact gaaatatagt
      901 atttttctac ctgctggtat atttgatatg aaactctgtg tagatcttca gtgttggact
      961 tggagactcc agagttagac catcctttta gacgacctcc aagaatgtta aaatatcgaa
     1021 ctgtctcttg aggatcaaaa gtcaccgaat ctgttattgt cccatctccc agcattacct
     1081 ttatagctga ggtctttagc gaagatttaa tgctattaaa ataaacttgt tccatcttag
     1141 aataagctga atttaattcc aagcagaatt tgtcgctgcc ttttaagggt actctcatac
     1201 ttgcactctt ttttaataat ttagataatt attcgcattc gaaagagaca atctactatc
     1261 tagtgttatt ccgtaacaaa aacaagtttt tatcaattat accaaatgag ctttaaattc
     1321 aacatattta attgtaatat ccagagatgg atccaaatga gaaaggggaa gacaaaagga
     1381 aaaagatttc tataaaaaaa gatccttctg aggatttaga ttcacccttc ttaaaattat
     1441 cacattatga gataaattct agtcacgata cttcacaaat gcatgatgta actactctca
     1501 ttagtcaaac gcaaaaaagg ttgtggaatg cactaaagag aagatacaga tatagttcaa
     1561 ctcttgatcc ggcacagaac tatctacgaa aacatgcaga ttcaaaaatt tgtcttgcag
     1621 tcttgtatat agatctcgtg ggatctacta atttgtgtat gacgatatca gtcgataaat
     1681 tagctactat aatcagagca ttcacttatg agatgtcttc tgtagttcaa acctataacg
     1741 gttttgtact gaagtatgtt ggtgatgctg ttatctcttt ttttccatcc gcgtccagca
     1801 aatatgtcgc ttgcgaaacg gcagtcaaat gcggtatgtc catgttaagt atcattagaa
     1861 atggtctaaa cccaatcttg aatcagtacg actatccaga acttagcgcc aagataggca
     1921 tagatgaagg agaaaacgcc gtggtgcaat acaatacgga caaaaattct cctcttgata
     1981 tacttggtta ctgtatgagt gtatctgcta agatgacatc actaacagaa ccaaataaga
     2041 ttacaattgg tgacgatgta tataatgtcc tccatcccga actgaaagag aaatttgtgc
     2101 aggtgagtta cagtgaaaaa gaatggaagt atgtcaacaa acggactgga cagttgtata
     2161 agctccacac ccttaacttg tgataaaact tgggattctg aattgaaatg aaacagattg
     2221 ttcaggcaga atatttgctt tttataaacc gtcgatagaa aagactaaaa tacataataa
     2281 gtgcttggta ttctcatgcc tacagcatat attttagtta attgcacatt gggttctgag
     2341 gaaaaaatca taacggaaat tgcaaagttg cccgatgtta aggaagttcg agggacgtat
     2401 ggagtgcatg atgtatttgt caaggtaaaa tccgacaata cagagtctat gaatcataca
     2461 ataactaaca ggataaggaa ggtccctggt ataacatcta ctgtgacgtt ggttgttata
     2521 gaagagcaag gaggaaaaga aattacataa aatcatgaaa tatttttttt cttgtcttct
     2581 tccttaattc tcttaatttc ataaattatt aaacccgtgc ttactccaat aatagtccat
     2641 cctactatgc caacagttaa gtagtgctga taaattggaa atgagagtgc actgccagca
     2701 gctattgcgc ccacccacca aaatataatt agtacttgaa gatttatttt agttaactcc
     2761 actcacccac gttcgtcttc atcaaaccct ttcaaccaac gcactatctt tccgcaatt
//
LOCUS       DASSIK010000020         2104 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1184194, whole genome shotgun sequence.
ACCESSION   DASSIK010000020 DASSIK010000000
VERSION     DASSIK010000020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2104)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2104)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2104
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1184194"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(555..1577)
                     /locus_tag="VFI64_00320"
     CDS             complement(555..1577)
                     /locus_tag="VFI64_00320"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: protein motif:HMM:NF002060.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HET7241759.1"
                     /translation="MGIEILAATSNFDIESILSDLEVGYQIIGSRRNLKRIRSVAAID
                     EATPYDLTFYSGHHNKASSIVSNTNAGIILCNKSVGTSISVRPDQLLVLVDNPRLVFM
                     HVANRLRNIKIKRKSGVSRFSCISDTARINRSCAVGNFSVIDEGCIVGKNTIIGDRVS
                     LQNCVIGDNCIIQSGVSVGEDGFAYERNESLELEAFPHFGKVIIGNNVEISTNCSIAR
                     GSLKDTVLHDGTKIDALVHVAHNVNIGRNCSLTAGTIIGGSTTIGDTCWLGLNSTVKH
                     KLQIGNKAIIGSGASVIDNVPDEDIVAGVPARSIKHKVNSDQLFLMAGQIKTWNKNKN
                     TKLLHY"
     gene            1868..>2104
                     /locus_tag="VFI64_00325"
     CDS             1868..>2104
                     /locus_tag="VFI64_00325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241760.1"
                     /translation="MNNVPVNNVYAQQNVTTNQTSLDVDNQIAQDNNKTHLGVNMRGY
                     YTSMPASRDFKFPFPDNYYDTSFKDISKANIVDHV"
BASE COUNT          660 a          390 c          345 g          709 t
ORIGIN      
        1 tataccaaat gtggtaatat tcggaattct ttaaacaaac ccagcgagag tacgattctc
       61 tgaaaagaat agatgtagaa ataaaatatt tcttaaccta atgtatttaa ttaatgttag
      121 tgacagaatg agtagaaaat tttggtaatc atgtacaggg tccatgatat ctaggaaatt
      181 ctgataaaat agtatagttt tacaaaaaaa cggtttaaaa ctattttaaa taaatagaat
      241 agatatgaat ctgattgggt atattcctag tccaacattc aatctataaa taaatcgtgt
      301 catgtttgaa ataattagtc ctcggctatt tgttagattg ttagattgtc tgatcgctgc
      361 agaatacaat attcatatta gtttgattga tttgctgcta tgttcggtgc aaatacaaca
      421 ccaccgcaca ttttagctct catttttact aaggacaaaa atgcaatcaa ggattgtagg
      481 catacattga tttgattcgt attgttttta agcctgaata gaggagtgaa ttaaaagtcg
      541 gtcaccttcg gctactagta atgcaggagt ttcgtatttt tatttttatt ccacgtctta
      601 atttgtcctg ccataagaaa taactggtcc gaatttacct tatgctttat agaccttgca
      661 ggcaccccag caactatgtc ttcatctggc acattatcaa ttactgaagc tccagaaccg
      721 ataattgctt tgttacctat ttggagtttg tgctttacag tagaattgag gccaagccag
      781 catgtatctc ctatggttgt acttccacca attatagttc cagcagtaag gctacaattc
      841 ctacctatat tcacgttatg tgccacgtgc acaagtgcat caattttcgt tccatcatgt
      901 aacacagtat cctttagtga tcctcgtgca atagagcaat tagtacttat ctcaacgtta
      961 ttaccgataa tgactttacc aaaatgagga aatgcttcga gttctagaga ttcatttctt
     1021 tcataagcaa atccatcctc tcccacagat actcctgatt gaattatgca attgtctcct
     1081 atcacgcagt tctgaagact aactctatct ccaataattg tattctttcc tacaatacac
     1141 ccttcatcta taactgaaaa attacccact gcacaactgc gatttattct tgctgtatcg
     1201 gatatacacg aaaatcgaga tactccagat tttcgtttta ttttaatatt acgtaatcta
     1261 ttggcgacgt gcataaacac caatcttggg ttatcaacta gaactagaag ttgatcaggt
     1321 ctgacagata tactagttcc aactgattta ttgcacagaa ttattcctgc attggtattt
     1381 gatacaatag aggaggcctt attatgatgc cccgaataaa acgtaagatc atagggagta
     1441 gcttcatcga tggcggctac actccttatt ctttttagat tcctcctaga acctataatt
     1501 tgatagccca cttccaaatc cgataatatt gactcgatat caaagttgga tgtggcagct
     1561 agtatctcga tacccaatcc caaaataatt tctctctcat ttcttataag tgattgcttt
     1621 gtgtgattgt catgtgatta tccacgtaaa gatattttct attcttatgc catgaaatag
     1681 aaatgtatga tcatcatatg tagttgcttg aggatcaata attaagaatg atcttcagaa
     1741 cgttccaaat acttgttgat cagattacat tctgatctag ataattatga agtatgactc
     1801 tattattaac aagtatatac taacgataat tgtgctttgt tttacggtta ctactagctt
     1861 gtacattttg aataacgttc ctgtaaacaa cgtatatgca cagcaaaatg tcactacaaa
     1921 tcagacgagc cttgatgttg acaatcaaat tgcacaggac aacaataaga ctcatctggg
     1981 ggttaatatg cggggatact acactagcat gccggcgtca agagacttta aatttccctt
     2041 tcctgataat tactatgata ctagttttaa ggatatctct aaggccaaca ttgttgatca
     2101 tgtt
//
LOCUS       DASSIK010000021         3783 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_300184, whole genome shotgun sequence.
ACCESSION   DASSIK010000021 DASSIK010000000
VERSION     DASSIK010000021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3783)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3783)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3783
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_300184"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            256..984
                     /locus_tag="VFI64_00330"
     CDS             256..984
                     /locus_tag="VFI64_00330"
                     /EC_number="3.1.3.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008967 - phosphoglycolate phosphatase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycolate phosphatase"
                     /protein_id="HET7241761.1"
                     /translation="MISLIPKKINGVKAFAVDIDGTLTENGNGLVHLPAVSKLRFLER
                     SGYRVVFVTGRSAVEAYILSVFCGTTKIAVGENGGVVITRPDKFTILADKENCIKGYN
                     FLWERIPDVKIKPVFPRLSEVVLTRTFDMQIGKSILEESGLGLYLSDSKYAYHINQIG
                     VDKATGLTSALEMLKIDASEVVAIGDSETDIPMFELCGFSIALAHAETDVKNRANHVV
                     DGISGKGLSEAIDYISFNYLRDKK"
     gene            981..2975
                     /gene="argS"
                     /locus_tag="VFI64_00335"
     CDS             981..2975
                     /gene="argS"
                     /locus_tag="VFI64_00335"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HET7241762.1"
                     /translation="MTFQRFKDQIDDVMRDSLRKMGHKDQEYELLEPSKKEFGDITCN
                     VAFLLAKKLNKSPYEIASTIVKNYLKDSIQKQQPRYIASVEAHPVGYINFTVDCIRLG
                     GITLKTVLHDKNYGFVDIGKGKKVIVEHTSVNPNKALHVGHMRNVILGDTIARLLKLT
                     NHSVVVLNYVDDSGLQIADILVAFLYAKIPEEPQSEFMKFDKYCGNEVYVKVNGLYKS
                     DSSLLERRKLVLQALEIIDGSISAFASGITLKVLREQLKTCWRLRARYDLLNFESHLL
                     FSRLWDQVFQMLAAKGTIEYRTRGKNIGCWVFTSDVESNEKVIVRSDGTATYIAKDIT
                     YAALKVGIVQDPFRYYIFSNQWDGTNLWATTIREDVAKITPIERSVDSYINGNISSRR
                     HFYPADMAITLIDNRQDRLQRILGEIINKMEYRVRSYFPLSYGPVTLSSQTATQLGVS
                     IEENKNSVSMSGRKGITVDADSVLDALHRKAKQEAKERNPTFSDDELAEIAEELAISA
                     VRYNLIKYDIEKIMKFDIEDSLSLNGDSGPYIQYTHARLSRLIEKSGRSVLADQSSND
                     FMLEVADLLNQEIECGLLIQVSQFENIVLNAVENFDPKIIARYLHRLATIFNVYYEKI
                     PIVKEQDRRIRDARIKLVRAIKITLINGMRALGITPLERM"
     gene            complement(3055..3321)
                     /gene="purS"
                     /locus_tag="VFI64_00340"
     CDS             complement(3055..3321)
                     /gene="purS"
                     /locus_tag="VFI64_00340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HET7241763.1"
                     /translation="MNKYLVNVTIENKQDIGDPEGETVYKDLMINGGYSSVQSVRCGK
                     CLKIIIKAKSIENARKDIVKMCDELRIYNPIVSTFTISGISIVK"
BASE COUNT         1228 a          652 c          790 g         1113 t
ORIGIN      
        1 aaggcagaac agcacccttt cctgactagg cgacgggccc atacaatagt gttatattaa
       61 taaattattt gtacctatct atgaataatt atttccatcc tgaaacaacg gtagtgggta
      121 tcggaccata atatagctac taaatcatta ttaaatggta gttaatattg gaaatatctt
      181 ctctgggtat tcaagaacta acaagggaaa gattaaagat ggtctgcagg taaatgttgc
      241 ctttgtcagg catctgtgat ttctctgatt cccaagaaaa taaatggtgt taaggccttt
      301 gcagttgaca tagacggaac attaactgaa aatggcaacg gcttggtgca tttgcccgct
      361 gtctcgaagc tcagattcct agaacgatct ggctacagag tagtatttgt aacaggtcgc
      421 tcagctgtag aagcgtatat cttgtctgta ttttgtggta caacaaaaat tgcagttggg
      481 gagaatggag gtgttgttat tactagacct gacaaattta ctatattggc agacaaagaa
      541 aactgcataa aagggtataa ctttttgtgg gagaggatac ctgatgtaaa gattaaacct
      601 gtttttcctc gcctttcaga agttgttcta acaagaacgt ttgatatgca aattggaaaa
      661 tccattttag aagaaagtgg acttggactg tacttgtccg atagtaagta tgcctatcac
      721 attaatcaaa ttggagtaga taaagcaaca gggttgacaa gtgcgttaga gatgcttaaa
      781 atcgatgcta gcgaagttgt ggctattggt gacagcgaga ccgacattcc tatgttcgaa
      841 ctctgcggat tcagcatcgc attggctcat gctgagaccg atgtaaagaa cagggctaat
      901 catgttgttg acgggatttc aggcaaaggc ttgtcagaag caattgacta tatctcattc
      961 aactatctta gagataagaa atgacattcc aacgctttaa agatcaaata gatgacgtta
     1021 tgagagattc actaaggaag atgggtcata aggaccaaga atatgagctt cttgaaccat
     1081 cgaaaaaaga atttggtgat ataacctgca atgtggcatt tcttttggcc aaaaaactca
     1141 ataaatctcc atatgaaatt gcgtcaacga ttgtgaaaaa ctatctaaaa gactcgattc
     1201 aaaaacaaca accgagatac atagcctcgg ttgaagctca ccctgttgga tatatcaatt
     1261 ttacggtgga ttgtattagg cttggtggta tcactttgaa gacagtactg catgacaaaa
     1321 attatggctt tgtagacata ggaaaaggaa agaaggtaat tgtggaacac acaagtgtaa
     1381 atccaaacaa ggcgctgcac gtcggccaca tgcggaatgt tatacttggg gataccattg
     1441 ctcgacttct gaaattaaca aatcatagcg ttgttgttct gaattatgtg gacgattctg
     1501 ggttacaaat tgccgacatc ttagtagcct ttctctatgc aaaaattccg gaagagcctc
     1561 aatccgaatt tatgaaattt gacaagtatt gtggaaatga agtttatgtg aaggtcaatg
     1621 ggctctataa gtctgactct tccctccttg agagaagaaa actggtgttg caagcgctag
     1681 aaataattga tggatcaatt tcagctttcg cgtctggaat aacgctcaag gttctacgag
     1741 aacagttgaa aacgtgttgg agattaaggg cccgttacga tttgttaaat ttcgagtctc
     1801 atctattgtt ttcaaggttg tgggatcaag tatttcaaat gcttgccgct aaaggcacga
     1861 tcgaataccg taccagagga aaaaatatag gctgttgggt cttcacatca gacgtcgaat
     1921 caaacgaaaa agtaatagta agaagtgatg gaaccgcaac ctacattgcc aaggacatca
     1981 cgtacgctgc gcttaaagtg ggtatagtcc aagatccatt ccgatattat attttttcaa
     2041 atcaatggga tggaactaat ctgtgggcaa caacaatccg ggaggatgtg gcaaagatta
     2101 cccctataga gcggtctgtt gattcctata taaatggcaa catctcgagc aggagacatt
     2161 tttatccggc agatatggct atcacgctaa tcgataatag acaagataga ctacagcgca
     2221 tattgggaga aatcattaat aagatggaat atagagtccg cagttacttt ccattgagct
     2281 acggacctgt cacactaagt tcacagactg caactcaact tggagtaagt atagaagaaa
     2341 ataagaattc tgttagcatg tccggaagaa agggaattac tgtcgacgca gattccgtac
     2401 tagatgcatt gcacagaaaa gctaagcaag aagcgaagga aagaaatcct acttttagtg
     2461 acgatgaact tgccgaaatt gcagaggagc tggcgatttc agccgtgaga tataatctaa
     2521 taaaatatga tattgaaaaa attatgaaat ttgacattga ggattctttg agtctcaatg
     2581 gggactcagg gccatacata caatatacac atgcacgttt atccaggtta attgaaaaat
     2641 cgggacgcag tgtgcttgct gaccaaagta gtaatgactt tatgttggag gtggcggatc
     2701 tgcttaatca ggaaattgaa tgtgggcttc taatacaagt atcccaattt gaaaatattg
     2761 tactaaacgc cgtagaaaat ttcgacccta aaattattgc tcgctatctg catcgtttgg
     2821 ccaccatatt caatgtttac tacgaaaaga taccaatagt aaaggaacaa gaccgtagaa
     2881 ttagagatgc gaggatcaag ttggtaagag caattaaaat tactttaatc aatggcatga
     2941 gagctcttgg aataacacct ctcgagagga tgtgacattt ttttgttatc gggttaaggg
     3001 tcagtgttct ttggaatgtg tttaagaact actcataaat aaaacatggt gagactactt
     3061 tactattgat attccagata ttgtaaatgt actgactatg gggttgtaga tccttaattc
     3121 gtcacacatt ttgacaatat cttttcttgc gttttctatt gacttcgctt ttataatgat
     3181 cttaaggcac tttccacagc gaacggactg aacagaagag tacccgccat taatcatgag
     3241 atccttataa accgtctcgc cttcaggatc acctatgtct tgcttatttt ctattgtaac
     3301 attaaccaga tatttattca aagatgtcgc ttattgttaa ttataagtta agttgcataa
     3361 aatccttatt ttttcgtctt tttacaaata catctgcacc tctttaccat taaggatcaa
     3421 ggtatcaagg taaaaacata ataattgata ttgtatttga tttacttttt agtctcaaat
     3481 ggaatttggt agttgaatgg tatactttgg atagtttgag cctttcaacg taaaataata
     3541 tgaaaaaatg tcattattta cacaagcacc ttgcaaggat actcaatgca atacgcaatt
     3601 aacactattg tttgattaag actaactgac acaggattgc atacatttca gtagtaaacc
     3661 agctgattga acgggcattt tcatgatagc attatgaatt caaacaactt tgcgtattta
     3721 ccgacgcaag caatccttac gaaagtttta attacctgaa gggaaatcct gcagcgattc
     3781 gtc
//
LOCUS       DASSIK010000022         3947 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_990670, whole genome shotgun sequence.
ACCESSION   DASSIK010000022 DASSIK010000000
VERSION     DASSIK010000022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3947)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3947)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3947
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_990670"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2326
                     /locus_tag="VFI64_00345"
     CDS             <1..2326
                     /locus_tag="VFI64_00345"
                     /inference="COORDINATES: protein motif:HMM:NF020039.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="CopD family protein"
                     /protein_id="HET7241764.1"
                     /translation="DVITTRFGMVVLARTILSLVLFSISLLALRTIRRSPQILARGET
                     AGILALGLALLFTTSMIGHGAANNQFSSIAIDFAHNLAASLWIGGVLYFGLVFTSKLQ
                     VDNSLKADHKIALLSLILPRFSLLVIMILGFLVFTGPFLLFILSNNLGQVLTSSYGYT
                     LIVKLSLAVVMLAFGSYNQLSIQKEAQKYTSISISISTNGKSGERNNPSDPNFADSYH
                     KKGTKKNNGGDILSRFSRSAKAESIIGVLLLASVAFLVNTGIPNSETQGQQLVQPYSN
                     TTMYQQMQDEFKSTYYADNNSRVLLSIVPFTIGSNNFTVSFVDSNNSPVDVSSATLQY
                     TETEKSIGPISIDLKKVSKGVFLAKGAFGIPGLWNLQIEGSPNKPNSPAISATFSDLR
                     IKPKLNQFQFNITEFNTPNNSSQPLYPFYDKSRNSIWVGDTAINSGQILEYNLATNKY
                     HQHKINGTDIITILAKDSKNNIWFVDPITKQIGVYDPITGKHRLFQLPKTILPSSIAV
                     DPSDNLWITSTTTSQILIFDSKTNNITKTISLEKGARPITIAIDSLSGLAWIADERGK
                     LVGIDPSHNYSATVYAPTGVNDTLKSPTGLLLDSVGNNIFISQHEGQKVSVFNVITKS
                     FQDYPLLDPNGLPFGMALDKYGNLWIAEHTINRIAVIDPQTGKSKEVKIPSQTPFVQW
                     LTSDSDGNIWIAEQRGHALGIITSKVSATSLPSDISQSFPKENEGISSLLNYDFVVAP
                     AIVVGLILVALMYVKNVVDYRIAERTVRKYQRIL"
     gene            complement(2414..3337)
                     /locus_tag="VFI64_00350"
     CDS             complement(2414..3337)
                     /locus_tag="VFI64_00350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241765.1"
                     /translation="MKKIILPLILVFVTLICTPNLQNAVAHTFSPVESASFLSLVDQI
                     KSTLLPIKEDISSNVTQAREQAQYAKLLLNESVLKELKERNQRIATELLRMLNSIQNI
                     TVENVGENLSKVNDLLAEAVSFRIQNDQLTNVTVQALVFAYDVNKISDEYTSAFKEGN
                     TSLNMDMHTTKDDMHSMKMDNNSMSMSTNATKMEIVTDVAAYQRAGALTDIAIERFNA
                     ELSGKSNSSSALERVVKGLDQLKVSIKNIESPVTVLGTIHGEIQPNLQIAFNLQLAPS
                     TNHGIGNMSMSTSTNNNNNQSMEEHMMMNMN"
     gene            3630..>3947
                     /locus_tag="VFI64_00355"
     CDS             3630..>3947
                     /locus_tag="VFI64_00355"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HET7241766.1"
                     /translation="MNAVRILFVCVLIITISILVPKLITPVTGQTPAEQLTKLLHEGN
                     FLYTQKKYDQALKSFKKMLALDSTNTFAMDRIGLILYNLGNVKDAIAYFDKSLAIDPN
                     NTAT"
BASE COUNT         1210 a          775 c          732 g         1230 t
ORIGIN      
        1 tgatgtaatt accacaagat ttgggatggt agtactagcc agaacaatct tatcgttagt
       61 cttgttttca atttctcttc tcgcgttacg aacaattaga agatctccac aaatcctagc
      121 taggggtgaa actgcaggaa tattagcctt gggtctcgct ttgcttttta ctacaagcat
      181 gataggccac ggtgctgcaa ataatcaatt ttcctccatt gctatcgatt ttgcacataa
      241 tttggccgcc tctttatgga ttggtggcgt tttatacttt gggctggttt ttacttcgaa
      301 actgcaagtc gacaactctc ttaaagccga tcacaagatc gcactattat cgcttattct
      361 cccccgcttt tctctactcg tgattatgat actgggattc ttagtgttta caggaccatt
      421 cttattattt atactcagca ataatttagg gcaggtgctt acatcttcgt acggttatac
      481 gcttattgtt aaactatctt tggctgtggt catgttggca tttggatcgt acaaccaatt
      541 atcaatacaa aaagaggcac agaaatacac ttctatctca atttccatat caactaacgg
      601 taagagcgga gagaggaaca atccttcaga tccaaatttc gctgatagct atcacaaaaa
      661 ggggactaaa aaaaataatg gcggcgatat tctttctaga ttttcacgct cagctaaagc
      721 tgaatctata ataggagtat tacttttagc atctgtcgct ttcctggtaa acactggcat
      781 acctaatagc gaaacacaag gtcaacagct agtgcaaccg tatagcaata cgacaatgta
      841 tcagcagatg caagatgaat ttaaatcaac ttattatgct gacaataact ccagagtact
      901 tctttctatt gtccctttta caatagggag taataatttt acggtatcat ttgttgactc
      961 caataatagc cctgtggacg tgagttcggc gacactccaa tatacagaaa ctgagaaatc
     1021 gataggaccg atcagcattg acctaaaaaa agtttcgaag ggtgttttct tagctaaggg
     1081 ggcatttgga ataccggggt tgtggaactt acaaatagaa gggagcccaa ataagcctaa
     1141 ctctccagcc atctctgcca cgtttagcga tcttagaatt aaaccaaaat taaatcaatt
     1201 ccaattcaat ataaccgaat ttaatacacc taataactca agccagcctc tgtacccatt
     1261 ctatgacaag agcagaaatt ctatatgggt tggcgatact gctatcaata gcggacagat
     1321 attggagtat aaccttgcta ccaacaaata ccatcaacat aagataaatg ggacagacat
     1381 aattaccatc ctagctaaag atagcaaaaa taatatttgg tttgtagatc ctataacaaa
     1441 acagatcggt gtttatgatc caataactgg taaacataga ttattccagc taccgaagac
     1501 catacttcca tccagcatcg cagtcgatcc ttctgacaac ctgtggatta catctaccac
     1561 tactagccag attcttatct ttgattctaa aacgaataat attacaaaga caataagctt
     1621 ggagaaggga gcaagaccga taacaattgc aattgactca ctctctggtc tggcctggat
     1681 agctgatgaa agaggaaagc tagttggtat agatcctagt cacaattatt ctgcaactgt
     1741 atatgcgccc acgggtgtga atgacacttt aaaaagtccc acaggtcttc ttttagatag
     1801 tgtaggaaat aatatattca tttcgcaaca cgaaggtcaa aaggtatccg tattcaatgt
     1861 aataacaaaa tcatttcaag actacccact tcttgatcca aatggtctac cttttggaat
     1921 ggctctcgat aagtatggta acttatggat agcagagcat acgatcaata ggattgcagt
     1981 aatcgatcca caaaccggta aatccaaaga ggtaaaaatt cctagtcaaa ccccatttgt
     2041 ccaatggctc acttcagatt cggatggaaa catatggatt gctgaacaaa gaggtcatgc
     2101 acttggcatc ataactagta aagttagtgc cacatcttta ccatctgaca tatcacaatc
     2161 tttccctaag gaaaatgaag gcatatctag tctgctaaat tacgattttg tagtcgcacc
     2221 tgcaatagtg gttggcttga tattggttgc tctgatgtac gttaagaacg tggtggacta
     2281 cagaattgca gaacgaacgg taaggaagta ccagaggatt ctctaactaa aaacggggct
     2341 tcttctcttc tcaggtaagg cagaacttta aacagtctga actgtcatat gactatcact
     2401 aacctttgcg tagttaattc atattcatca tcatatgttc ttccatggat tgattattgt
     2461 tgttatttgt tgaggttgac atggacatat tgccgattcc atgattcgta ctaggagcaa
     2521 gttgtagatt gaatgcaatt tgtaggttag gctgtatttc accatggatg gtccccaaaa
     2581 ctgttacagg ggattctatg ttttttattg acactttgag ttgatccaat ccttttacca
     2641 ctcgctccag ggccgaactg gaattcgatt ttccgctcaa ttcagcattg aatctttcaa
     2701 ttgcaatatc tgttaatgca ccggctcgtt gatatgcagc tacgtctgta acaatttcca
     2761 ttttggtagc attagttgac atgctcatag aattgttgtc catcttcata gaatgcatat
     2821 cgtccttagt ggtatgcata tccatgttca atgaagtatt accttcttta aaagccgatg
     2881 tatattcatc tgatatctta tttacatcat atgcaaagac aagcgcctga acggttacgt
     2941 ttgtgagctg atcattctgt attctaaagc ttacagcctc ggcaagaaga tcgttgactt
     3001 tgctgagatt ctcgcctaca ttctctactg ttatattttg aattgaattt aacatccgca
     3061 gcagttctgt tgcaattcgt tgatttcgct ctttgagttc cttcagtacg ctttcattga
     3121 gaagcagttt tgcatactgt gcttgctctc ttgcttgagt aacattagat gaaatgtctt
     3181 ctttaattgg tagtaacgta gattttatct gatctactaa ggaaagaaat gacgcgctct
     3241 cgaccggtga aaaggtatga gcaactgcat tttgtagatt aggagtgcat atcagagtca
     3301 cgaataccag tatgagtgga aggataattt ttttcataac aataattgac cctatttttt
     3361 acttatatgt tttgatacac taatcgaata acttttatct tgattccgta atggcgacga
     3421 agcaacagtg agataaatac tctggatagc attaacttag ttgaccaggc cttaacaagg
     3481 atccatgcca tacggcagtc atttgagggt acgctatctt tagctaaaat ccgagatgat
     3541 aataattatc tgttactgag aactcatagg ccattggcaa tttaatttgc agcgacatgt
     3601 ttttacggga atactatcaa cttctgatcg tgaatgcagt aagaattctt ttcgtttgcg
     3661 ttttaataat aactatttcc attctcgttc caaaactgat aacaccagtt actggacaga
     3721 cacctgcaga acaattgaca aaattattgc acgaaggcaa ttttctttat acccagaaga
     3781 aatatgatca agccttgaaa tcattcaaaa agatgcttgc acttgattct actaatacat
     3841 ttgcaatgga tagaatagga cttatacttt acaatcttgg aaacgtaaaa gatgcaatag
     3901 cttactttga taagtcgtta gcgattgatc caaataatac tgctacc
//
LOCUS       DASSIK010000023         2006 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1286353, whole genome shotgun sequence.
ACCESSION   DASSIK010000023 DASSIK010000000
VERSION     DASSIK010000023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2006)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2006)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2006
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1286353"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(40..960)
                     /locus_tag="VFI64_00360"
     CDS             complement(40..960)
                     /locus_tag="VFI64_00360"
                     /inference="COORDINATES: protein motif:HMM:NF001658.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription initiation factor IIB"
                     /protein_id="HET7241767.1"
                     /translation="MRLVKDISLFTDRCPRCGKGPMVTDNSSGEMFCGNCGFVITERI
                     EETGPEWRAFSKEEHEDRSRAGIPTSLAMHDMGLATIIGPIDKDASGKPLSASMKSTI
                     ERLRTWDSRSQVHEPVDRNFRQAFSELDRLKDKLAVGDAVIEKAAYVYRKALEKGLVR
                     GRSISALVAAALYAACRDTETPRTLKDIANASNIKKKDVARCYRLLIRELDLKMPVVD
                     PVKCVARIASKAGLSEKTKRKALEILKKAEEGKISAGKDPMGLAAAALYVACVMNGEN
                     KTQKDVAEAAGVTEVTIRNRYKGLKLHLKL"
     gene            1419..1922
                     /locus_tag="VFI64_00365"
     CDS             1419..1922
                     /locus_tag="VFI64_00365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HET7241768.1"
                     /translation="MIATAIRYLLEICLSTLLLVACVDSPMEGETDRHSDEQIKAIYD
                     LKNIAIVGMSKNPEKPSHFVPRYLIEHGYTVIPVNPTASTILERRSFQKVSDIEDKVD
                     VVDIFRKSEDVYPIIQDAIRKAGIRVIWLQEGIHNIKAEKLAIENGIDVVYNRCMMAE
                     HTRLFPV"
BASE COUNT          566 a          432 c          359 g          649 t
ORIGIN      
        1 gttatctacg gttcaaaaat aaaggaaagt cttcatcgat caaagtttta agtgaagttt
       61 aagtcctttg tacctgtttc taatagttac ctctgttact cctgctgcct cagcaacatc
      121 cttctgggtt ttattctcgc cgttcatgac gcaggcaacg tacaaggccg ctgcggccaa
      181 acccattgga tccttgcccg cggaaatttt tccctcttca gccttcttaa gaatttcaag
      241 agcctttctc ttggtttttt ccgacaaacc agctttactt gctattcttg caacacattt
      301 tacaggatcg actactggca tcttcagatc aagttctctt ataagaagcc gataacatct
      361 tgccacatcc ttcttcttga tattacttgc atttgcaatg tcttttaatg ttcttggagt
      421 ttcggtatct ctacaagctg catataatgc ggctgccaca agcgccgata tggatcttcc
      481 tcttacaagg cccttttcta aagccttcct ataaacataa gctgctttct caataacagc
      541 atctccgacg gctaacttat cctttagtct atccagctcg ctgaatgcct gcctaaaatt
      601 cctgtcaacg ggttcatgaa cctggcttct actatcccaa gtcctcaaac gttctattgt
      661 acttttcatt gaggctgata acggcttacc tgaggcgtct ttatcgatgg gtcctattat
      721 tgtagccaaa cccatgtcgt gcatagcaag ggacgttgga atgcctgctc tactcctgtc
      781 ctcgtgttcc tcttttgaaa atgctctcca ttcaggccct gtttcttcaa ttctctcagt
      841 tatgacaaaa ccgcaattac cacaaaacat ttctccacta gagttatctg ttaccattgg
      901 tccttttcca cagcgaggac aacgatccgt gaataaagaa atatctttaa ccagccttat
      961 tcaccataaa aattccaaac attgggctac taatatatat agtttattct aatatatagg
     1021 tattgtccta aaagtttttt aactactgat atatgtctgc aaaatcttat ggaatggcaa
     1081 gttaatatta taaaattttc tactttaata tatattttaa gtatttcaca gaatcgttcg
     1141 cgattaacac ccaattcaaa tacaaaatca caccctggga acatttcgtt tgcgtcgcct
     1201 tgctttttct atctttttgc tctcatacct ttgagcactg tatgcatgcg tttttttgtt
     1261 tatcttcggc acaacttgcc atggtgtaat tcaatataaa tactaactaa tgatatgtat
     1321 tagggcctgg aaagtctggg cgcatatttt tgtactagca ttacgtaaga agagaatcta
     1381 tcgttgtatg agatgctgac ctaccatatg tgattaagat gattgcaacg gcgattagat
     1441 atttacttga aatatgcctc agtacactat tattggttgc atgcgtagat tcccctatgg
     1501 aaggtgaaac ggacagacac tccgacgagc agataaaggc catctatgat ctcaagaata
     1561 ttgcaatcgt tggaatgtca aagaacccag aaaagccgtc tcattttgtt ccaagatatc
     1621 ttattgaaca cggttacaca gtaattcccg tcaatccaac tgcatcaaca attctggaac
     1681 ggagaagctt tcaaaaagtt tcagacatag aggataaagt ggatgttgta gatatattcc
     1741 gaaaatcaga agatgtttat ccaataatac aagatgccat acggaaggcg ggaattcggg
     1801 taatatggct gcaggagggt atccacaaca taaaagctga gaaacttgcc atagaaaatg
     1861 ggattgatgt agtctataat agatgtatga tggccgaaca tacgagattg tttcctgtct
     1921 gatttctttt gttggcttca agacacgaac caagatatta cgttggacgc atcttgtcta
     1981 gatttttgtc aaggatatag ttgatc
//
LOCUS       DASSIK010000024         6643 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1086640, whole genome shotgun sequence.
ACCESSION   DASSIK010000024 DASSIK010000000
VERSION     DASSIK010000024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6643)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6643)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6643
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1086640"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(163..789)
                     /locus_tag="VFI64_00370"
     CDS             complement(163..789)
                     /locus_tag="VFI64_00370"
                     /inference="COORDINATES: protein motif:HMM:NF012804.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HET7241769.1"
                     /translation="MRLENTENSNKKTRKGPNDASKLVRCVRELYGMGLTSSISGNHS
                     IRLGNNMMLITPTGIPRYNLKASDLVRINLQTGDVYGNSKPTIEWQMHRDIYRKTNSS
                     AVVHTHSPFTLGVAISSNFRHVIEEAKFVVGNPVIIKHLPSGSAKLAQEVSNIFESSK
                     AKAVIIRNHGVVAVGGDIDEARAVVESLEEWSKILTVAKIFGGAKYHL"
     gene            1003..1722
                     /locus_tag="VFI64_00375"
     CDS             1003..1722
                     /locus_tag="VFI64_00375"
                     /inference="COORDINATES: protein motif:HMM:NF013743.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241770.1"
                     /translation="MKIDYCLFPEGILYDLENLVWLKEDNNNNDDNKNNNNTVSVSST
                     KKFTVGVTPILASIAGKFTKIKLKPAGTDLEKGKSIGSVESVRYFGIARSPINGKILQ
                     VNEKVLANPKLANDFPYENGWLIKMETDAISPSDMSGLKIVEDCQEEIKSIMEKLHVR
                     CFAAFPDHQMFEIGVECAATLTKLGELLSKVQLGDVVHLVSDDNSADLEMIRWTEDNG
                     QLLLETRKEGNLFHFIVKKAK"
     gene            complement(1831..2667)
                     /locus_tag="VFI64_00380"
     CDS             complement(1831..2667)
                     /locus_tag="VFI64_00380"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HET7241771.1"
                     /translation="MEYAHPEVLVDTNWVDQHKNDPKVRVAEVDYDPTANYTLGHVPG
                     SVLIDWKADINDPLTRNIITKQACESLLQRVGVNDDTTLVLYGDFNNWFAAFAFWVFK
                     YYGYKDVRLMNGGRKKWLEEDKPVTKDIPSHAKGNFKASEPDSSIRVFLKYVRDTLGS
                     KILVDVRGPKEFTGEILAPPEYPTEHAQRGGHIPGAVNIPWAQAVNEDGTFKSADELQ
                     KLYQSKGVAADKEVISYCRIGERSSHTWFVLKYLLGYPNVKNYDGSWTEWGNMIDNPI
                     ER"
     gene            complement(2905..3420)
                     /locus_tag="VFI64_00385"
     CDS             complement(2905..3420)
                     /locus_tag="VFI64_00385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit I"
                     /protein_id="HET7241772.1"
                     /translation="MSSAGGFIKAIESGSKHLLIKRFTLRYPEEKLKFVGDGYQFDPK
                     KGVGIAGSRGRHILFHDKCTGCQLCAIACEGIAEAIGMVKVEEQWKHNKKAIMPQIDY
                     GKCVFCALCVDACPFYALYMTNDYELSSFTKEHLIYTPAQLAVKPKYDGTMELRIGKR
                     GADHAEPALTE"
     gene            complement(3423..4688)
                     /locus_tag="VFI64_00390"
     CDS             complement(3423..4688)
                     /locus_tag="VFI64_00390"
                     /inference="COORDINATES: protein motif:HMM:NF012373.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="complex I subunit 1 family protein"
                     /protein_id="HET7241773.1"
                     /translation="MASAPQDFRFGNFVGSVIWLLLWVLTIVTLIGLPLIFIILFYVP
                     LPPVNGEVLTPYLFFSMMVDPSRTIPIIKFLIHTDLFRVAVFPGFSYAALLAAVTIYV
                     ERKFLAKMQLRIGPLYAGKIEGILQLIADGLKLISKEIIIPSGADKPIFWATPVAFVA
                     TSAAVAALIPVAPGWVVANVNVGLIAVFAFLGFFPLFALLFSWASNSKYPFIGGLRAL
                     HQMIAFEIPFILSALPVVILSGSLNLSGIATSQHPYWFIFFLPISAFVFYISSLAELE
                     RIPFDLPEAESEIVAGWLTETSGMIFGLLQLGTYVKLYALAALFVILFLGGWSGPQIF
                     PTEILPGYTGEKIYNAVTVNAAFWFTIKTLGMIMLLLLPRGINPRIRIDILLHTGWYK
                     LIVLSFINIFVALGLIYGGILGPGGLVTG"
     gene            complement(4689..5849)
                     /locus_tag="VFI64_00395"
     CDS             complement(4689..5849)
                     /locus_tag="VFI64_00395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit D"
                     /protein_id="HET7241774.1"
                     /translation="MPDFQQKVDETMKMGLEIVKESDEDRFMTLSVGPQHPGSGHFRF
                     TIKLDGDYIVFCDPDPGYVHRGEEKMSEYRNFIQNIPHLERPVIHDSTNITYSYSLAV
                     EELCSIEVPRRGQFIRAIASELNRQVYTLYWLAIYGIFLGHSTMFMWPTGDRELFIDL
                     LEALTGARVTHAFNIPGGVRNDMPEGFKDRCLRQVAYFEKRLKEYEDIFYNNPLFRQR
                     TEEVGILTKDDAISLGVAGSVLRASGVPLDIRKAEPYDVYNEIDFKVQYMKSGDSFAR
                     SMVPFLDMRESCHIIRQLLDKIPQAGEVRAKLQPNPKGPPGESYKRVESGRGALGYYI
                     ISDGTPRPYRVKISVGSFRNMLALPFLLVGSKLADMPSIYWSLNYWPVEADR"
     gene            complement(5877..6512)
                     /locus_tag="VFI64_00400"
     CDS             complement(5877..6512)
                     /locus_tag="VFI64_00400"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HET7241775.1"
                     /translation="MSSKDSSPDKPSGSPDSANKILNSTPMDNPSANPEPTKIVTNPS
                     SSVIPSNTNAIAPKFEEELVNKIVARCGNKVEIVYARPSRLKIRVQPEDILQIASFIK
                     GVLGFDHAESVSGTDYPKDNQIEVVYHLGSYTVEDLIPKILALSTRTNRDEARLPSLI
                     NIFKSVEYHERETFEMLGVYFEGHPRMERFLLPEDWADIPPLRKDFRIKGR"
     gene            complement(6514..6642)
                     /locus_tag="VFI64_00405"
     CDS             complement(6514..6642)
                     /locus_tag="VFI64_00405"
                     /inference="COORDINATES: protein motif:HMM:NF013242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241776.1"
                     /translation="MLPGIDGIVPVDVYVPGCPPRPETLIQGCMLLQEKIKRSKIR"
BASE COUNT         1992 a         1411 c         1236 g         2004 t
ORIGIN      
        1 ccattatacg gtagtgtatg gcgacatata aaccttgact ttaaatggta ttcattgccc
       61 gccattaccg tcaaagcaag catcgaatat cccaataatg atagtttcat acaaaaaatt
      121 tattttctta cctataatat aagctgaaag ctaattaaac cttcacaaat gatatttggc
      181 cccaccaaaa attttcgcta ccgtcagtat ttttgaccac tcttcgagcg actctactac
      241 tgcccttgct tcgtcaatat ctccacctac tgcaacgacg ccgtgatttc gtataataac
      301 tgccttcgcc ttgctgcttt caaaaatatt cgaaacttct tgagctagct tggcagaacc
      361 cgaaggaaga tgctttatga tgacaggatt tccaactaca aatttcgctt cctctatgac
      421 atgtctgaaa tttgatgaga tggccactcc aagagtaaaa ggactatgag tatgaacaac
      481 agcgcttgaa ttggtcttcc tgtagatatc tcgatgcatc tgccattcga tagtgggttt
      541 ggaattacca taaacatcgc ctgtttgaag gttaattcgt accaaatcag atgcttttag
      601 gttgtaacgt ggtattccag taggggttat cagcatcata ttgttcccta atcttatgct
      661 atgattccca gaaatcgatg aagtcagtcc cattccatat aattcccgaa cacaccgaac
      721 caatttcgaa gcatcattcg ggccttttct cgtcttctta ttggaatttt cagtattttc
      781 taatctcaat taggtcctgt cctctttatt ctaaagtgga atactaaatt tcatgatata
      841 ttcattttct tggctaacaa gcgaggtcca gtttcaatac taataaaata tatgatttgt
      901 gttattgtag tgcagtttcc aaattagatc cattttggag caattcatga acacgacaaa
      961 aaaataaaag aataaactgg gcattattgt caaagagagt ctgtgaaaat agactactgc
     1021 ctttttcctg aaggaattct atatgacttg gagaatttag tctggctgaa agaggataat
     1081 aacaataacg atgacaataa aaataacaac aacaccgtct ccgtcagttc gaccaagaaa
     1141 tttactgtag gtgttactcc tattttggca tctatagcag gtaaatttac aaagatcaag
     1201 ttgaaaccag cgggaactga tctagaaaaa ggaaagagca taggatccgt agaaagcgtt
     1261 cgttattttg gtatcgctcg ctctccaatt aacgggaaaa ttcttcaagt aaatgaaaaa
     1321 gtgcttgcaa atccaaaact tgccaatgat tttccctatg agaatggctg gcttattaaa
     1381 atggagacag acgccatttc tccatctgat atgagcggtc tgaaaattgt cgaagattgt
     1441 caagaagaaa ttaaatcgat tatggaaaag cttcatgtaa ggtgctttgc tgcgttcccc
     1501 gatcatcaaa tgttcgaaat tggcgtagaa tgcgccgcta cactaacaaa acttggggag
     1561 cttctttcca aagtccaatt aggcgatgta gtacatcttg tgtccgatga taactcggca
     1621 gatttagaga tgatcaggtg gactgaagat aatgggcaac tattgttgga gacgagaaaa
     1681 gagggtaatc tgttccattt cattgttaaa aaagcaaaat aaaagaaaga aaaggaattt
     1741 tctctttcta tgctagtccg caatagcgga acataaaaag caacggatgg aggaaggaaa
     1801 tttggtccta tcttattctt gtatggtata ttacctttct atgggattat cgatcatgtt
     1861 tccccattct gtccacgagc cgtcataatt ctttacatta gggtatccaa gtagatactt
     1921 tagtacgaac cacgtgtggg aagatctctc accaattctg cagtatgata tgacctcttt
     1981 gtcggcagca acgccctttg attggtacag cttttgtagt tcatcagccg atttgaaagt
     2041 cccatcttcg tttacggctt gtgcccaagg gatgttaact gcaccaggga tgtgtccacc
     2101 tctttgggca tgttccgtgg ggtactctgg aggcgccaaa atttcaccgg taaattcctt
     2161 aggacctctg acgtcgacca atattttgct gcccagagtg tctctaacgt actttagaaa
     2221 taccctgata ctggaatctg gctctgatgc cttgaagtta ccttttgcat gtgatggaat
     2281 gtcctttgta acgggcttat cctcttcaag ccatttcttc cttccgccat tcataagcct
     2341 cacgtccttg tatccgtaat atttgaagac ccaaaatgca aaagcagcaa accaattgtt
     2401 gaaatcacca tacaacacaa gtgttgtatc atcgttcact ccaactcttt gtaaaaggga
     2461 ttcacatgct tgttttgtaa taatatttct tgtcagagga tcattaatat cagctttcca
     2521 atctattaga actgaacccg gtacgtgacc taacgtatag ttagccgtag gatcataatc
     2581 tacttcagca actcgtactt ttggatcgtt cttatgttgg tctacccaat ttgtatctac
     2641 taaaacttct ggatgtgcgt attccataaa ctcatatcac cttgttatag tactaaatga
     2701 ggataaatat tagtattgca tttagaaatg ccgttattat ggtcttgaac tgcgtcccat
     2761 gacctttaat taatcaagat aattaggttg gcttggaaca aaacatccat ttttctgata
     2821 caagaaactg gtttcattaa ttatgcagat gtaggtgtag tcggatgttg tctagaattt
     2881 tctagcacat tcctaaaatc aaatctattc tgttaaggca ggttcagcat gatcagcgcc
     2941 tctcttacca atccttaatt ccatagtacc atcatacttt ggtttgactg ccaactgtgc
     3001 tggtgtgtat atcaagtgtt cctttgtgaa agaagaaagc tcataatcat ttgtcatata
     3061 cagcgcatag aacggacatg catctacaca taacgcacaa aatacacatt taccataatc
     3121 aatctgtggc attatcgcct ttttgttatg cttccactgt tcttctactt tgaccatccc
     3181 tattgcttct gcaatccctt cacaggctat tgcgcatagc tgacatcctg tacatttgtc
     3241 atggaatagt atgtgtcttc cccttgaacc tgcaataccc acacctttct ttggatcaaa
     3301 ttgataccca tctcccacaa atttgagctt ctcttcggga tagcgcaggg taaatctctt
     3361 tataagtagg tgctttgagc ctgattctat tgcttttata aagcctccag cagatgacat
     3421 tgctagcccg tcaccaagcc tccaggtccc aatatgcctc cgtaaatcaa tcctaatgca
     3481 acaaaaatat tgataaaaga taatactatc aatttatacc atccggtgtg aagaagaata
     3541 tcgatcctaa ttctaggatt gatacctctt ggaagaagta acaacataat catacccaaa
     3601 gtttttatgg tgaaccagaa agcagcgttc acagttacag cattatatat cttctcacca
     3661 gtataacctg gcaggatttc tgttggaaat atctgtggtc cgctccaacc gccaagaaag
     3721 agaattacaa acaaggcagc taaggcatat aatttaacgt aggtaccaag ttggagtaat
     3781 ccaaatatca tacctgaagt ctccgtcagc catcctgcta caatttcact ttcagcttct
     3841 ggcaggtcaa atggaattct ttcaagctct gctaacgagg atatgtagaa gacaaatgcg
     3901 cttatgggaa ggaagaagat aaaccagtat ggatgttgag aggtagcgat accagaaaga
     3961 ttgagcgacc ctgatagaat aacgacaggc agggcagaca ggatgaacgg tatttcaaac
     4021 gcaatcattt ggtgaagtgc cctcaatcca cctatgaatg ggtacttact gttactagcc
     4081 caggagaata ataatgcaaa caatggaaag aatcctaaga atgcaaaaac agcaataaga
     4141 cctacgttta cattagcaac gacccatccg ggagcaacag gaattaatgc ggctactgcc
     4201 gcggatgttg caacaaatgc aacaggggtg gcccagaaaa tcggtttatc ggcacctgat
     4261 ggaatgatga tctctttgga aattaacttc agaccatcgg caattaattg aagtatacct
     4321 tctatttttc ctgcataaag aggccctatt ctaagttgca ttttagccaa gaatttcctt
     4381 tcaacatata tcgttactgc agcgagtaat gctgcgtatg agaatcctgg aaatacagcc
     4441 accctgaaaa gatcggtatg aattagaaat ttaataattg gaatcgttct tgaaggatca
     4501 accatcatag aaaagaacag atatggtgtt aaaacttctc cattgacagg gggaagaggt
     4561 acataaaata gaataatgaa aatcaaaggc agaccaatga gtgttactat tgttaacacc
     4621 cacaataaaa gccaaattac acttcctaca aaattaccaa atctgaagtc ttgaggtgca
     4681 gatgccaatt atctatcagc ctccacaggc caataattca gagaccagta gatagagggc
     4741 atatcagcca attttgatcc cacgagtaag aaaggcaagg caagcatatt tctaaatgat
     4801 cctacggaaa tcttcaccct ataaggtctt ggagtaccat cgctgatgat ataatagcct
     4861 aacgcgcctc tgccagactc taccctctta taagattcac ccgggggacc ttttggattt
     4921 ggttgtaact ttgctcgtac ttcgcctgct tgtggtatct tatctagtaa ctgtcttata
     4981 atatgacaag attccctcat atccaaaaag ggtaccatgg accgcgcaaa tgagtcacca
     5041 cttttcatat actgaacctt gaaatctatt tcattataga catcgtacgg ttcagctttc
     5101 cttatgtcaa gtggaacccc agatgctcta agcaccgatc ccgccacacc gagactgatc
     5161 gcatcatcct tagtaagaat tcccacttcc tcagtccttt gtctaaagag agggttatta
     5221 tagaatatat cctcatactc ttttagtctc ttttcaaaat atgcaacttg tcttaagcac
     5281 cggtccttaa atccttccgg catgtcgttt ctgacaccgc ctgggatatt gaacgcatgt
     5341 gttactcttg ccccagtcaa agcttctaaa agatctataa acaattctct gtcaccagtg
     5401 ggccacataa acatagttga atggccaaga aatataccat aaattgctag ccagtataag
     5461 gtatatactt gcctattcag ttcagaagca atggctctta tgaactggcc ccgccgcggg
     5521 acttcaatac tacaaagttc ttccactgcc aaactgtatg aataagtgat gttagttgaa
     5581 tcatgaatca ccggtctttc taaatgtggt atgttttgga taaaatttcg atattctgac
     5641 atcttttctt caccgcgatg cacatatcct gggtctggat cgcagaagac gatataatct
     5701 ccatccaatt ttattgtaaa tctgaaatgc ccagaacccg ggtgctgtgg ccctacgcta
     5761 agagtcataa atctgtcctc gtcagactcc ttaacaattt caagacccat tttcatagtt
     5821 tcgtcaactt tttgttggaa atctggcatc ttgtttctaa cctctacacc taactcctat
     5881 ctacccttga tcctgaaatc ctttctaagt ggtggtatat cagcccagtc ttcgggtaga
     5941 agaaatcgtt ccatcctagg atgaccttca aagtaaacac ctaacatttc aaaagtctct
     6001 ctttcatggt actcgacgct cttgaatata ttaattagac ttggcagtct agcttcgtct
     6061 ctatttgtcc ttgtcgatag ggccaaaatt ttaggaatta gatcttcaac agtataagaa
     6121 cctaggtggt aaacaacttc aatttgattg tctttaggat aatctgtacc agaaactgac
     6181 tctgcatgat caaaccccaa gacccctttg ataaaagaag caatctgtaa aatatcttca
     6241 ggttgaactc taatcttcag tcgtgatggt ctggcgtaca ctatctccac tttgttacca
     6301 catctggcaa caatcttatt gacgagctct tcttcaaatt ttggagctat tgcattagtg
     6361 ttggatggta tcaccgagga cgatggattc gttacaattt ttgtaggttc ggggttagca
     6421 gatgggttat ccattggagt agagttcaaa attttgtttg cagaatctgg ggatccagaa
     6481 ggtttatcgg gacttgaatc tttagaactc attctatctt atcttcgacc ttttgatctt
     6541 ttcttgtagt aacatacagc cttgaattaa agtttcaggt cttggaggac aaccaggtac
     6601 atacacatca accggtacaa ttccatctat accgggaagc aca
//
LOCUS       DASSIK010000025         8282 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1087165, whole genome shotgun sequence.
ACCESSION   DASSIK010000025 DASSIK010000000
VERSION     DASSIK010000025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 8282)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8282)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8282
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1087165"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(209..1318)
                     /locus_tag="VFI64_00410"
     CDS             complement(209..1318)
                     /locus_tag="VFI64_00410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241777.1"
                     /translation="MTLVKNGVVATGANENLLRNISSPATDSLISAAGTGVKSVIAAN
                     PNAENMSSRTQNNSIYAVGGKNWNLSLPDKESKGNITISNVDTPKTGNSDSLPGILQI
                     KNMTTGTLTFDKNRTNLNSTINSSYQANIGTISYTPKFVCGTISSNNGPLRPGYYDTD
                     ISIFNKQNYPIKLLWNVVVSDGPSSNAIIKHLSAETSTKISCSDLQVLISNNTNFLEG
                     FIVIVLPISGNILGAFPDPSGNGVSILRPVDDTNADLIDVQVFYTANALPNLPQNMIT
                     ENVAFQIIADPSNKIPKTSLNRELEISFVSDPNKVYDPENRTKMFLAKEHGMSGIEVN
                     NLKIKINRTDVVTSYQQDDHAISSSRINPDIRYTN"
     gene            1573..2511
                     /gene="pyrB"
                     /locus_tag="VFI64_00415"
     CDS             1573..2511
                     /gene="pyrB"
                     /locus_tag="VFI64_00415"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase"
                     /protein_id="HET7241778.1"
                     /translation="MKNNHFFDRDIVTIKDFSRADLEFVFDATDKVSSLKPKERGQLA
                     SARTLGYIFYEPSTRTRMSFEAAMASIGGSSLGIFDPRYSSIEKGETLYDTIRTMDLY
                     SDILVLRHQMDGSSRYAAEISTHPVLNGGSGSEEHPTQAMLDLYTMKKEKKNIDGLKI
                     CILGDLKYGRTVYSLLYGLVHYNVEIYLVSPPSLRIRQESIYGLTEKLKISELTELDD
                     ELLSKIDVLYVTRIQRERFPDIQEYEKVKGAYIIDSNVLNRLKSDTSIMHPMPRIDEI
                     SKNIDLTKNAIYFKQVAYGKELRAALLALVLNESGL"
     gene            complement(2647..3564)
                     /locus_tag="VFI64_00420"
     CDS             complement(2647..3564)
                     /locus_tag="VFI64_00420"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transaminase"
                     /protein_id="HET7241779.1"
                     /translation="MNGKKIWIDGRFYDWDEAKIHVLTHALHYGTGVFEGIRCYKTTK
                     GYAVFRLKEHIRRLIESGKMYYMTFHQSDKELERVVLETIKINGLNEWYVRPIAYYGY
                     GKMGVNPLPNKVSVSVALWKWDEYLKSNSGRVGARVMISSWLRIDNRCMPMRAKATAN
                     YANSALARVEAIKSGYDEAIMLNTQGKVVEGSAENIFIVKDKTVVTPPIGAGALDGIT
                     RSTILTICKEHGIAFEIRDITRDEMYEADEAFLSGTAAQIKPIIEIDSRALADGTVGK
                     TTKKLQEHYEKIVRGKAGVLSKNWLTYLQ"
     gene            complement(3561..4982)
                     /locus_tag="VFI64_00425"
     CDS             complement(3561..4982)
                     /locus_tag="VFI64_00425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HET7241780.1"
                     /translation="MKRVTVMKFGGSALGIDGSAIAEVIERIIQVRRESMVIAVFSAP
                     LTNYEGKTVSMTDVAIHVGRSYSNSNPIEIDILRDIYEKIAAEYLTQSLYKAFLVDLN
                     KFHKEVIVSLKQAAENRRFVDVTRARTLAYSGEIVMSYLMDYILKSKGLISDHVRIEN
                     WPIVTDDNFEAATFLFDDSRKRITYLKQLIEKNDIVTLGGFVGKTVDGIETTYERGGS
                     DRTAADVAILLNDYYDTELDFEKDNAVLSADPKIVKQDLDYVNNLSYNEAKLAGMFGM
                     KILDPVAIKEIDDNGLDIPIVITDMRSPSNLTRIVNHASEESANYLKIVTGRKNCAIV
                     RIESLAASHLLAMLESDKQYHDFVKLSPYKKDGVEISRVLFLDGDYVRRNERHFRAFY
                     PKLEIMYGRGVVTLIGDNMWKIPGIASTASSTVGENSINILNLDAQEETSRILIVVDE
                     SNVSAAVRAVHAKRKQIHGVKQS"
     gene            5260..6066
                     /locus_tag="VFI64_00430"
     CDS             5260..6066
                     /locus_tag="VFI64_00430"
                     /inference="COORDINATES: protein motif:HMM:NF016424.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TPM domain-containing protein"
                     /protein_id="HET7241781.1"
                     /translation="MAILFVNLFSILLDNTFIVAAGLRPSYVYDYANVIDSNYESVIE
                     GYLRAVDEATSAEIVIYTIPSFIGHGIKKDGHEINDRDLLANFLFNEVTLDGIKGIGK
                     KGKDNGVLVLYSLKSDSGGGSMRIEVGRGLEGDITDGIAGEILDSYLVPAREIYQNSG
                     NSTVLDQAFLNTVISIGQRIGYSTKEGIYQLDEPLQNGDNIELFQIALPLLVIGLIVF
                     LVFIGRKRRWGGWYGGVIGGGSGWGGGWNSGGGGSFGGGGGRSAGGGAGR"
     gene            6002..6724
                     /locus_tag="VFI64_00435"
     CDS             6002..6724
                     /locus_tag="VFI64_00435"
                     /inference="COORDINATES: protein motif:HMM:NF015944.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HET7241782.1"
                     /translation="MAVVEVSVEGEVAAPEEELVDKFNICQPCERETRGLLARTGIKV
                     AVGLVLVIMIILGILYGMYVSGYNAVQAKDESVKKLAADVDTQLQRRYDLIPNLVSSV
                     KGYMQFEQQTLERITQLRSQWMAASDTSQRVSLSNQIEEALSKIILTYENYPELKSDR
                     TVTRLMDEIAGTENRISVARTYYNDGVRDFNIHLRTFPNNIFNENGFLGAKAWGYIVY
                     PQYSATQNAQNTVPQVNLTLAQ"
     gene            6967..7653
                     /locus_tag="VFI64_00440"
     CDS             6967..7653
                     /locus_tag="VFI64_00440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241783.1"
                     /translation="MKCRDLIENNINSSYYCTNKLNRLIGFIFIAGFMTIFQTGSNSS
                     LAQTINSTQNLNQTGLDGNLLYIVIFGNKTIGNIDNQTNFVSSVVGNNQDRIREEFVK
                     SISMIPSEQLKKEINQVVDAGISGGGCKNIVHTVDSKVDCIKSGDKVFWFVSEVVMPK
                     TQDANKTSGIGVSIANGTLGYKTVYEHTTSPKTFSPEEQAAIDMRCNVLGNNYSSLSI
                     ADRGWLLANC"
     gene            8058..8186
                     /locus_tag="VFI64_00445"
     CDS             8058..8186
                     /locus_tag="VFI64_00445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241784.1"
                     /translation="MVKIGSSENDEKKKRTTKKGILVTIIIVAAIVATSFLVYLIP"
BASE COUNT         2537 a         1585 c         1610 g         2550 t
ORIGIN      
        1 ctgttctgat ccaaattatt catgatacct aagccaaatt gggaactcaa agtatatgca
       61 aataaaaatt tccaaaatat tccttagaaa aatcgtttaa taaattagct atatgggcca
      121 tttatacaac tatacggcta cctgctcata tcttagtttc agctgcgtca tgaatttcgg
      181 gcagaaagta gaactccaag tccagcattc aattagtata tctaatatca ggattaattc
      241 ttgaagatga tattgcatga tcatcttgct gatatgaagt aacgacatca gttcgattta
      301 ttttgatctt gagattattt acttcaatac cagacatccc gtgttcttta gccaaaaaca
      361 ttttggtacg attctctgga tcatatactt tgttaggatc tgacacaaat gatatttcta
      421 attctctatt caaagatgtc ttgggaattt tgttagaagg atcagctata atttgaaatg
      481 caacattttc agtaatcata ttttgaggca agtttggtaa tgcgtttgcg gtatagaata
      541 cctgtacatc aattaaatct gcatttgtat catcgactgg tctcaaaatt gacacaccat
      601 taccgctcgg atctggaaac gcaccaagaa tatttccact aattggtaat acgatcacaa
      661 taaatccttc aaggaaattg gtattatttg agataagtac ctggaggtca gaacacgata
      721 ttttggtaga agtttcagct gataaatgct taataattgc atttgaagaa gggccatccg
      781 aaactactac attccaaagg agcttgatag ggtagttctg cttgttaaaa atgctgatgt
      841 cagtgtcata atagcctggt ctaagcggtc cattattcga agaaatcgta ccacaaacga
      901 atttgggtgt atagcttatg gttcctatat tggcttgata cgagctatta atagttgagt
      961 ttagattggt tcgattttta tcaaaagtta atgtcccagt ggtcatattc tttatttgca
     1021 aaattccagg aagactatcc gaattacctg tttttggagt atctacgttt gatattgtaa
     1081 tatttccctt actctccttg tctggcagcg acagattcca atttttcccg cctacagcat
     1141 aaattgaatt gttttgagtt ctagaactca tgttctctgc gttaggattt gctgctataa
     1201 cagacttcac tcctgtcccc gcagccgaaa tgagtgaatc agttgccgga gatgaaatat
     1261 tccttagtaa attttcattt gctccggttg caacaacacc atttttgact aaagtcattg
     1321 ctaactggcc agcaaataaa accagaatcg atataataat caagaacttt ttcaagttga
     1381 ccatatttac gagagaaatt ctataatata tgtgatgagg ctatagataa tgtctatact
     1441 tgacaaagtc ttgaaaaatg caggctaata attttgttct accttcaacc cctatctatc
     1501 atctaaactt ttgttcaaaa ttgacaatct tttattagga atgcttttca gaataattaa
     1561 aagctgatgt ttatgaaaaa taatcacttc tttgatcgcg atatagttac aataaaggac
     1621 ttctctagag ctgatctcga atttgtgttc gacgcaacag acaaagttag ttctctcaag
     1681 ccaaaagaaa gaggtcagct agcctctgca agaacacttg gctatatctt ctacgaaccc
     1741 agtaccagaa cgagaatgag ttttgaagct gcaatggcat ccataggagg aagttcctta
     1801 ggaatatttg atccgcgata ttcttcaata gagaaagggg aaacgttata cgatacaatt
     1861 cgaacaatgg atctctattc cgatatcctg gtactacggc atcaaatgga tggctctagc
     1921 agatacgctg cagaaatatc cacccatcct gttcttaatg gaggtagtgg tagtgaagaa
     1981 catccaactc aggcaatgct tgacctatac acaatgaaaa aggagaaaaa aaatatcgat
     2041 gggcttaaaa tatgtattct tggagatcta aaatatggta gaactgtgta ttccttacta
     2101 tatggtcttg ttcactataa cgtagaaatt tacttggtct caccaccatc tttacgtatc
     2161 aggcaggaat caatttatgg acttacggaa aagttaaaaa tatctgaact tacagaacta
     2221 gacgatgagc ttcttagcaa aatagatgtg ctatatgtta ctcgaataca gcgagagcga
     2281 tttcccgata tacaagaata tgaaaaagtt aagggtgcat atattattga tagtaacgtc
     2341 ttgaataggt taaaatccga tacatccatt atgcatccca tgcctagaat tgacgaaata
     2401 tctaagaata tagatctgac gaaaaatgcc atatacttca aacaagtcgc atacggaaaa
     2461 gaactgagag cagcattatt ggcgcttgtt ctcaatgaat ctggtctata ataagctccc
     2521 caagtgggtt taagcgaaac atcccactca ctctgtcgct atataatact tcagtcaaat
     2581 ttatgtgatg ttaggggtat tttccagaat agcgattgag caattaagag acttttgcaa
     2641 acggttctat tggagatagg ttagccaatt cttgctcagt acccccgctt ttccgcgtac
     2701 tattttttca taatgttcct gaagcttctt agtagttttt cccacagtac catcagccaa
     2761 agctctactg tcaatttcga ttattggttt gatctgagcc gcagtgccac ttagaaacgc
     2821 ctcatccgct tcgtacattt cgtctctggt aatgtcgcgg atttcaaaag caatcccatg
     2881 ttctttacat atggtcagga tcgtagacct agtaattcca tctaatgcgc ctgcaccaat
     2941 gggcggagtt acaaccgtct tatcctttac tatgaagata ttttctgcac tgccttcaac
     3001 cacttttcct tgggtattta gcatgatagc ttcatcgtat ccagacttaa tagcttcaac
     3061 tctagctaaa gcagagtttg cataattggc tgtggctttg gcgcgcattg gcatacatct
     3121 attatcaatc cttagccagg aagaaatcat cactctcgct cctacacgac cggaatttga
     3181 cttgaggtat tcatcccatt tccaaagagc aactgatact gataccttat tgggcaaagg
     3241 attgactccc attttgccat agccatagta cgctatgggg cggacgtacc attcatttaa
     3301 accattaatc tttatggttt ctaaaacaac acgttcaagc tctttgtctg attggtgaaa
     3361 agtcatataa tacatttttc cactttcgat caatcttctg atgtgctctt ttagtctaaa
     3421 aacagcatag cccttagttg ttttatagca acgtataccc tcaaatacgc cagtaccata
     3481 atgcaaggcg tgtgtcaaga catgaatctt tgcttcatcc cagtcataga acctaccatc
     3541 gatccaaatt ttctttccgt tcatgattgt ttaactccat gtatttgctt tctctttgcg
     3601 tgtactgctc tgacagcggc agagacattc gactcatcta caactatcag gatcctagat
     3661 gtctcttcct gagcatctag atttaggata tttatgctat tctcacctac tgtgctacta
     3721 gcagtggatg caattcctgg tatcttccac atgttatctc caatcaaagt tacgacacct
     3781 cttccataca taatctcaag ctttggatag aatgctctga aatgacgttc attgcggcga
     3841 acgtaatctc catctaggaa cagtactcga ctgatttcca caccgtcttt tttatagggg
     3901 gatagtttca cgaaatcgtg atattgttta tcactttcta acattgcaag tagatgagaa
     3961 gcagcaaggc tctcaattct aactatggca caattcttcc tcccagtaac aatcttgaga
     4021 tagttggctg attcttcact agcgtgattc actattctag ttagattcga tggactcctc
     4081 atatccgtta ttacaatggg gatgtcaagt ccattatcat caatttcttt tattgccacc
     4141 ggatcgagga tcttcattcc aaacatcccg gctaactttg cctcgttata cgacaaatta
     4201 ttgacataat ctaagtcttg ctttactatc ttgggatcgg cacttagtac tgcattatcc
     4261 ttctcaaaat caagttcagt atcataataa tcattcaata gtattgcgac atctgcagca
     4321 gttctgtcag aacctcctct ttcataagtt gtttcgattc cgtcaacagt tttacccacg
     4381 aaaccgccta atgtaacgat gtcatttttt tctatcaatt gtttgagata tgtaatcctt
     4441 tttctcgaat catcaaatag aaatgtcgct gcttcaaagt tatcgtctgt tactataggc
     4501 caattctcta ttcttacatg atccgatatc agccctttac ttttcagaat ataatccatc
     4561 aaatatgaca taactatctc accactatac gccagagttc tagccctagt aacgtcaaca
     4621 aaccgacgat tttcggccgc ctgcttgaga gacacaatta cttccttgtg aaatttatta
     4681 aggtcgacta aaaatgcctt atacaaagac tgtgtgagat attccgcggc tattttctca
     4741 tatatatctc tcaaaatatc tatttcaatt ggattcgagt tagaataact tcttccaacg
     4801 tgaatcgcaa catcggtcat tgagacagtc ttgccctcgt aatttgtcaa gggcgccgaa
     4861 aacaccgcta ttaccattga ttcacgtctc acctgaatta ttctttcgat aacctctgcg
     4921 atggctgatc catcaattcc tagtgcgctt cctccaaatt tcattacagt gacgcgtttc
     4981 aatgtaataa tccttgaaag ttgcataatt taatccatat attaggtatc ccatcagatc
     5041 aattcgcagc gttgactaat agcagcaggt tattgtgaca ccatgagtat cagtactgat
     5101 attttgtctt cttacaataa gtaggcggat acacgatttc tagttcgcga atgtaagcaa
     5161 tataattttt aggttaggcc ttgtaaggac caataacgga tgtttaagat aataggtgga
     5221 gttggtcgta aatgtcgaat atgttggact atggtttcaa tggcaattct atttgtgaat
     5281 ttattttcga ttctccttga taataccttc attgttgcag cgggcttacg tccatcgtat
     5341 gtctatgatt atgcaaacgt tatagattcg aattacgaat cagtgattga aggttatctt
     5401 cgggcagtag atgaagcaac atctgcagaa atcgtaattt acacaattcc gagctttatt
     5461 gggcatggga ttaagaaaga cggtcacgaa atcaatgaca gggatttgtt ggcaaatttt
     5521 ctattcaatg aagttacatt ggatggtatc aaaggcattg gcaagaaagg gaaagataat
     5581 ggtgtcttgg tcttgtattc actaaaatct gactctggag gtggttctat gcggatagaa
     5641 gttggccgcg gactagaagg ggacattaca gacggaattg ccggcgaaat tctcgattct
     5701 tatttggtcc ctgctagaga aatatatcaa aattcaggga atagcacagt ccttgatcag
     5761 gcattcctca atacggttat atccattgga caacgcatag gatattctac caaggaaggg
     5821 atataccaac ttgatgagcc tcttcagaat ggtgacaata tcgaactatt ccaaatagct
     5881 ttgccattac ttgtaatcgg tctgatagta tttcttgtat tcattggacg gaagagaaga
     5941 tggggtggct ggtacggtgg ggttattggt ggagggtctg gatggggggg aggctggaat
     6001 agtggcggtg gtggaagttt cggtggaggg ggaggtcgca gcgccggagg aggagctggt
     6061 agataaattt aatatatgtc agccttgtga gagagagaca cgtggtcttt tggctagaac
     6121 tggtatcaag gttgcagtag gattagtcct tgtcatcatg attattctcg gtatactgta
     6181 tggtatgtat gtctctggat acaatgctgt tcaagccaag gacgagtcag taaaaaaact
     6241 tgctgcagat gttgacacac aacttcaaag gaggtatgat ttgataccta atttagtatc
     6301 ttcggttaag ggttatatgc aatttgagca gcagacgttg gaaagaatta cccaactgag
     6361 gtcgcaatgg atggcagctt ctgatacctc gcaacgtgtg agccttagta accaaataga
     6421 agaagcacta agtaagatca tattgacata cgaaaattat cctgaactca aatcagacag
     6481 gactgtaaca agattgatgg acgaaatagc aggcaccgaa aataggattt ccgtggcacg
     6541 aacatattac aatgatggag ttagagattt caatatccac cttaggacat tcccaaataa
     6601 catatttaat gaaaatggat ttttaggagc aaaagcttgg gggtacatcg tatatccaca
     6661 atattcagca acgcagaatg ctcagaatac cgttcctcaa gtgaatctga cacttgctca
     6721 atagcaggtg gcggcaagca ctatcggctg agtattaagc atcatctgga ggatagattt
     6781 caacggtact cttcggctag cggggctccc cttgaaacta cgtttgtgat tagtactgaa
     6841 aggacatatc caatacaagg ttcaatgaga tacaatagat aggattgacg attatttaat
     6901 taggcagatc gattagtatt tgaagagcat ttacaaagat acatggaaga attttgtctg
     6961 gactggatga aatgtagaga tttgatcgaa aataatatta attcatccta ttactgtacg
     7021 aataagttga acaggctcat tggttttatt ttcattgcag ggtttatgac catatttcaa
     7081 acaggctcaa atagttcgtt ggcacaaacc atcaactcaa ctcaaaattt gaatcaaacc
     7141 ggtctagatg gcaacttgct gtacatagta atttttggga ataaaacgat aggaaatata
     7201 gataaccaga caaatttcgt atcctctgta gttgggaata accaggatag gataagggaa
     7261 gaatttgtaa agagcattag tatgattccc tctgaacaac taaagaagga aataaaccaa
     7321 gtagtcgacg cagggatatc tggaggtggc tgcaaaaaca ttgtccatac tgtcgatagt
     7381 aaagtagatt gtatcaagtc aggagacaag gtattttggt ttgtttcgga ggtggttatg
     7441 cctaaaactc aagatgccaa caagacgtct ggcattggag tatccatagc taacggaaca
     7501 ctggggtaca agacagtata cgaacatact acgagtccaa aaacgtttag tcctgaggaa
     7561 caggcagcaa tagatatgcg ttgcaacgta ctcggaaata attactcgtc tttatcaatt
     7621 gctgatcgtg gatggctcct cgctaactgc tgatccaatg tttacctagg ggccaagcgc
     7681 aagaacgtga gctgttggac aagagagaaa tcggaaagca caaaagctag tactgttaag
     7741 tccatgcata tccattttcc agtctgggtt aaattcaaaa cagaaaaggt gtatgattct
     7801 gccctttact accatactat acgggatgca gtacatagtc actatatgtt atttatttaa
     7861 accaggtaag tgttgtcgga aataaaataa aatgaactgc tgtttattga taaattccta
     7921 aacttatcaa tcggagtatt tacgatttgc aaatgaacga aattctcacc attccatttt
     7981 ttcactgctc ccactttgcc aaattcgaac agtaaaaata ttaaagattg ccatgcaata
     8041 gctaacttga tcttggcttg gtgaaaattg gcagctccga aaatgacgaa aagaagaaac
     8101 ggacaacaaa gaaaggtatt ttggtaacaa tcatcatagt agcagctatt gtagctacaa
     8161 gctttcttgt gtacttgatc ccttgataga caggctcggg aattttaaca taatttagca
     8221 gaactttttt tcagcaaaat aaaaaaactg tgccaaaatc agttgaccgt cacagcaata
     8281 cc
//
LOCUS       DASSIK010000026         2322 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_890198, whole genome shotgun sequence.
ACCESSION   DASSIK010000026 DASSIK010000000
VERSION     DASSIK010000026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2322)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2322)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2322
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_890198"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..209
                     /locus_tag="VFI64_00450"
     CDS             <1..209
                     /locus_tag="VFI64_00450"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="asparagine synthase-related protein"
                     /protein_id="HET7241785.1"
                     /translation="QPFLSEKFISVAMEIPVSHKIKGSTDLLRKHILRKIALSLDVPE
                     DSVIHRKKAFQYGTLIHKNYKDII"
     gene            complement(202..1581)
                     /gene="purB"
                     /locus_tag="VFI64_00455"
     CDS             complement(202..1581)
                     /gene="purB"
                     /locus_tag="VFI64_00455"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP
                     AMP-lyase (fumarate-forming) activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HET7241786.1"
                     /translation="MSILPIDSCRYGSEEMKEIFKEDMKLQYQLNFEAEVAITQARLN
                     IIPPAAAKEISVLAKSKMITSKRVKQLERISEHDTAAVVEAISERCSSLTKPWVHFGL
                     TSNDIIDSCTSMQIRDAFAILEPKLSKLSLAMLNKAKEFRRVPAVGRTHGQHASIISF
                     GLKFAVWASELAQHLDRIEEGKKRFLMCKTLGVVGTGSLMGTKAIEVQEKVAERLGLN
                     PIEAATQVIPRERFAESQFVVSLIGCTLDKIAVEIRNLQRTEIGEVEEPFRKGQMGSS
                     AVPVKRNPIKSERVSSLARILRSLLSVAMENIPLWHERDLTNSANERFTFPMSFILVD
                     EMLNAMLRIFEGLKVNPQRIKDNINKTKGQIYSEFLLEALVKKGIPRFSAYRDIQRIA
                     FDALENGEDFQDIVMKDPSIMKNLTIAELKKIFNPSNHLSASEKIITNVSNGVKKTIS
                     KLGSGSKIK"
     gene            1745..>2322
                     /locus_tag="VFI64_00460"
     CDS             1745..>2322
                     /locus_tag="VFI64_00460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008452 - RNA ligase activity [Evidence
                     IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RtcB family protein"
                     /protein_id="HET7241787.1"
                     /translation="MSGLLTRSGNLQVRKVGDFEYRIDKDVSKGMNVPVTIYANDNLI
                     SKMVTDRTIDQASNVATLPGVTKHVVVLPDGHEGYGFPVGGVAAMDLEDGVISPGGVG
                     YDINCGVRLIRTSITERELRPRLKDIVNELFTAIPAGVGSASRTKLTRSDLDDLLVEG
                     VPWAVERGYGWQSDIEVCEETGKMEGADPGSVS"
BASE COUNT          692 a          450 c          465 g          715 t
ORIGIN      
        1 agcaaccttt cctttctgaa aaattcattt cagttgcaat ggagataccg gtaagtcata
       61 agataaaagg atcgactgat ttgttacgaa agcatatttt aagaaaaata gctctatcgc
      121 ttgatgttcc tgaagattca gttatacatc gcaaaaaggc ttttcaatac ggcaccttaa
      181 tccacaagaa ttacaaggat atcatttaat tttacttcca gatcctaatt tggaaatagt
      241 cttcttcacc ccattcgata catttgttat aattttctct gaagcagaca aatgatttga
      301 tgggttaaaa atcttcttta attctgcgat agttaggttc ttcatgattg aaggatcttt
      361 cattactata tcctggaaat cttctccatt ttcgagagca tcaaatgcaa tccgttgaat
      421 atctcgatat gcagaaaatc ttgggatccc cttttttaca agcgcctcaa gtaagaattc
      481 tgagtagatc tgccccttag ttttattgat attatccttg attctttgag gattaacttt
      541 cagaccctca aatattctta acatagcatt gagcatttca tctacaagaa taaatgacat
      601 tggaaatgtg aatcgttcat tggctgaatt tgtaaggtct ctttcatgcc acaaagggat
      661 attttccata gcaacagaca ataaagaacg aagaattcgc gccaaagaag ataccctttc
      721 actcttaatt gggtttcttt tcacaggtac agcactgcta cccatttgtc cttttcgaaa
      781 cggttcttct acctctccaa tttcggttct ttgtagatta cgaatttcta ccgctatttt
      841 gtcaagcgta caacctatta acgaaacgac gaattgtgat tcggcaaacc tctccctggg
      901 aatgacttgg gttgctgctt caataggatt caggcccaat ctctccgcca ctttttcttg
      961 aacttcaatt gccttggttc ccatgaggga cccagtgccg acgacaccaa gagttttgca
     1021 cataagaaat cttttcttac cttcttcgat acgatctaaa tgctgcgcca gttcgcttgc
     1081 ccaaacagca aattttagac cgaaggaaat tatactagca tgttgcccat gagttctacc
     1141 tacagcaggc accctgcgaa attcctttgc cttatttaac atcgcaagag ataattttga
     1201 aagttttggt tccaagatcg caaatgcatc ccttatctgc atagaagtgc atgaatcgat
     1261 gatatcgtta ctggtaagtc caaaatgtac ccatggtttt gtcagcgatg aacatcgttc
     1321 acttattgcc tctacaactg cggcggtatc atgttcgctt atcctttcca actgtttgac
     1381 ccttttcgat gttatcattt ttgattttgc taacacagaa atttcctttg cagcggcagg
     1441 aggtatgatg tttaacctcg cttgagtaat tgcgacttct gcttcgaaat taagttggta
     1501 ctggagcttc atatcctcct taaatatctc tttcatttcc tcactgccat aacgacaaga
     1561 atctatcggt agaatggaca tttattagaa agcgacaaga cagtaaaata aattttattg
     1621 aattttcggt gacagaatct atttaggccc atacgagcaa cttttagtag ccgattcaaa
     1681 gatatcactt tgaacgaaat cgtgtgaaaa ggttataatg actggttgat aaaatgacaa
     1741 acgcatgagt gggttattaa ccagaagcgg aaacctgcaa gttaggaagg taggggattt
     1801 tgaatataga atagataaag atgtatcaaa gggcatgaat gtccccgtta caatttatgc
     1861 taatgacaat ttaatctcaa agatggttac ggatagaaca atagaccagg catcaaatgt
     1921 tgcaacatta ccgggagtga ctaaacatgt tgtagtgtta cctgatggac acgaaggata
     1981 tggattccct gtaggaggtg ttgctgcaat ggacttggaa gatggagtaa ttagcccggg
     2041 tggtgtggga tatgatatta attgtggtgt ccggctaata agaaccagca ttaccgaaag
     2101 ggaacttaga ccgaggctta aggatattgt taacgagtta ttcactgcta tacctgcagg
     2161 agtagggagt gcaagtcgca ccaaactaac aagatctgac ttggacgact tacttgttga
     2221 aggtgttccg tgggcggtag aaagaggata tggatggcaa tcggatattg aagtatgcga
     2281 agaaacagga aaaatggagg gtgcagatcc aggatctgtc tc
//
LOCUS       DASSIK010000027         3274 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1381987, whole genome shotgun sequence.
ACCESSION   DASSIK010000027 DASSIK010000000
VERSION     DASSIK010000027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3274)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3274)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3274
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1381987"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1900
                     /locus_tag="VFI64_00465"
     CDS             <1..1900
                     /locus_tag="VFI64_00465"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HET7241788.1"
                     /translation="KLVDELRHFDGIKGGIAVNETEYMATTVLQEAKPLPQVIYSNVK
                     EIVEQGQYIFDTLWSKTIPAELKIREIDEGIIPFETKIIDNRDDIFKQIIHLAENSAG
                     LSILSNYGGMQLIYNNFLDLYKKVLDRQKSGKGSGIKWVMTINQESVELVKKFLKLGM
                     KIRHVKHLTPINFAVGEHELNATMEQMRGGKMVQNILTSNEPVYIKLFTSMFEQMWRD
                     GLDAEYRIKDLEEGIHEAEIEIIQNPVHVIDRSWEAIKSARKDMDSLFSSANALRRQI
                     AMGALDLLKEASEVHNVKVRLLIPSSRDINELIHEVKSAVPKIDIRVLDASLETRITI
                     LVVDKKKCLVIELKDDAQNSSYGAVGLSTYSESPSLSSSYSSIFESFWRQAELFEKLK
                     LVETLEKDFVNIAAHELRTPIQPIIGFSELLYSKMKNKGQRKLLESIMKNARRLEKLA
                     AVMLDVTRIEKNSLVLKKESFDMGQVIGDLVEQYNEQLRKMKQEEKDGGEEGKCDLRI
                     IWEPTENMNVYADKMRMIQVISNLLDNAIKFTSEGGVYVSMKKVAEGDQTSIAVSVKD
                     EGVGMDTELLTRLFTKFVSKSEIGTGLGLFICKGIVEAHGGKIWAKNNPDGRGATFAF
                     TIPLSNNK"
     gene            complement(1960..2904)
                     /locus_tag="VFI64_00470"
     CDS             complement(1960..2904)
                     /locus_tag="VFI64_00470"
                     /inference="COORDINATES: protein motif:HMM:NF015971.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241789.1"
                     /translation="MLRLERAKNNPVLVPDASNWWESRAVFNCAVLYDGKTIHMLYRA
                     IGEYEDYVSRIGYASSEDGLSFVRRKEVALCPEEDYEKFGIEDPRLGSIQDQIYITYV
                     VLSNYVKTHPTASTALATTNNFFDYKRHGIITVPGSDDKDVVLFPTANIGNGFQKYMM
                     LHRPSCWVGPQYNTDRPSIWLGEGDSVTKFEKHSLLVKPEQSWEALKIGVGVPPLKTK
                     KGWLVIYHGVSEDKVYSAGAFLLDLNDPHIILGKTKEPILAPEEEYEKKGDVNNVVFP
                     TGACILDSQLFVYYGGADKVCCLATVELDRLLEHILSC"
     gene            complement(2978..>3274)
                     /locus_tag="VFI64_00475"
     CDS             complement(2978..>3274)
                     /locus_tag="VFI64_00475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241790.1"
                     /translation="SGSGVMYDGLAHGLPFVSSNIEFFKEFSNLGLGISVERDPIEFS
                     KAFVKLERDYEKYENAVEIFRRKLAWKEVAKKHISLYESIRSSAEDIQVLEKYV"
BASE COUNT         1052 a          608 c          675 g          939 t
ORIGIN      
        1 gaagctagtt gacgagctcc gtcattttga tggtataaag ggtggcattg cagtaaatga
       61 aacagaatat atggccacca cagtattgca agaagcaaag cctcttcccc aagttattta
      121 cagtaacgtg aaagaaatag tcgaacaagg acagtatata ttcgatacct tgtggagtaa
      181 aaccatacct gctgaactga aaataagaga gatagatgaa ggaattatcc catttgaaac
      241 taagataata gacaatcgcg atgacatttt caagcagatt atacacctag cagagaattc
      301 tgcaggatta tcaattctat ccaactatgg aggaatgcaa ttaatctaca ataacttttt
      361 ggatctgtat aaaaaagttc ttgataggca aaagagtggc aagggaagtg ggatcaaatg
      421 ggttatgact ataaaccaag aaagcgtgga attggtcaaa aaatttctaa aactgggaat
      481 gaagataaga cacgttaaac atctaactcc tattaatttt gctgtgggtg agcatgagct
      541 taacgctacc atggaacaaa tgcgcggggg caagatggtt cagaatatcc tgacgagtaa
      601 cgaacctgtt tatatcaagc tttttacttc aatgtttgaa cagatgtgga gagatggact
      661 tgatgctgaa tacaggatca aagatttaga ggaaggaatt catgaagcag agatagagat
      721 cattcaaaat cctgtacatg tgatcgatcg gagctgggaa gcaataaaat cagcaagaaa
      781 agacatggat tcgctcttct cttctgccaa tgcactccga cgacaaattg caatgggtgc
      841 cctggatcta ctgaaggaag cgtcggaggt tcacaatgtt aaggttagat tgttaattcc
      901 atcatctcgt gacataaatg aactaataca cgaggtaaag tccgccgttc cgaaaataga
      961 cataagagtc ttagatgcga gtctcgaaac caggatcaca atactggtag ttgacaaaaa
     1021 gaaatgtctt gtcattgaat taaaagatga tgcacagaac tcatcctacg gtgcagtggg
     1081 tctatctacc tattcggaaa gcccgtcact ttcatcctct tattcgtcta tttttgagag
     1141 cttttggaga caggccgaat tatttgaaaa gctaaaacta gttgaaacct tagagaaaga
     1201 ttttgtgaat atcgcagctc acgagctccg gactcccatt cagcccataa ttggtttttc
     1261 agagttacta tattctaaaa tgaagaataa agggcaacgc aaattacttg agtctataat
     1321 gaagaatgcg agaagacttg aaaagttagc agcggtaatg cttgatgtta cccgaataga
     1381 gaaaaattcg ttggtgttga aaaaagaatc ttttgacatg ggacaagtta taggtgatct
     1441 ggttgagcag tacaatgagc aactaagaaa gatgaagcaa gaagaaaaag atgggggaga
     1501 agaaggaaaa tgtgatctga ggataatatg ggaaccaaca gaaaacatga atgtctatgc
     1561 agataaaatg agaatgatcc aagtgatttc taaccttttg gataatgcaa taaagtttac
     1621 cagcgaaggt ggtgtatatg ttagtatgaa gaaagtagca gagggtgatc agacatctat
     1681 agctgtaagt gtaaaggacg aaggggtcgg tatggataca gaattgttaa ctcggctttt
     1741 tacaaaattt gtctcaaagt ctgaaatagg cacagggttg ggactcttca tttgtaaagg
     1801 gattgttgag gcacatgggg gaaagatatg ggcgaaaaat aacccagatg gtcgtggggc
     1861 aacattcgcc ttcacgattc cgctctcaaa taataaataa taaacactca aagtgaattt
     1921 tggttagtaa ttttgtttta ttttatttta aattaaagat caacacgaaa gtatgtgttc
     1981 tagaaggcga tccagctcaa ctgtagcaag gcaacatacc ttgtcggcgc caccataata
     2041 tacaaacagt tgactatcga gaatgcaagc tcctgtggga aataccacgt tgtttacatc
     2101 cccttttttc tcatactctt cctcaggtgc caatataggc tcttttgttt ttcctagaat
     2161 tatatgaggg tcgttcaagt ccagaagaaa tgcaccagca ctatacacct tgtcctcgct
     2221 tacaccgtgg tatattacaa gccaaccttt ttttgtttta agtggcggga caccaacgcc
     2281 tatttttaag gcttcccaac tttgctcagg tttaactagt agcgagtgtt tttcaaattt
     2341 ggtaaccgaa tcaccttctc ccagccagat gcttggtctg tcagtattat actggggtcc
     2401 tacccaacag ctaggtcggt gtaacatcat atatttctga aatccatttc caatattcgc
     2461 cgtcggaaat aggacgacat ctttgtcatc agatccaggt acagttatta tgccatgcct
     2521 cttgtaatca aagaaattat tagtcgttgc aagggcagtt gaagcggtag ggtgtgtttt
     2581 gacataattc gaaagtacca catacgttat gtatatttga tcctgaatgc tccctaaccg
     2641 aggatcttcg atgccaaatt tttcatagtc ttcttctggg cataatgcaa cttccttcct
     2701 tctaacaaat gaaagaccat cctcacttga agcgtaacca atccgggata cataatcttc
     2761 gtattcgcct attgctctgt aaagcatatg aatagtcttc ccgtcataaa gaaccgcaca
     2821 attaaacacc gctctcgatt cccaccagtt agatgcgtca ggaaccaaga ctggattatt
     2881 tttggctctt tctagtcgaa gcattaagcg cttttatcaa tagtaacgat tttttattat
     2941 cttatatatg ttatgataat tttcccctaa aaattaccta aacatatttc tctaatactt
     3001 gtatatcttc agcactactc cttatcgact cgtagagtga tatatgcttc ttggcaactt
     3061 ctttccaagc caatttcctg cgaaatattt ctactgcatt ttcatatttt tcataatctc
     3121 gttcaagttt cacaaatgct tttgagaatt cgatggggtc gcgttcaact gaaatcccta
     3181 gccccaaatt ggaaaattcc ttgaagaatt ctatattact tgatacgaat ggaagtccat
     3241 gggcgaggcc atcatacatg acgcccgaac caga
//
LOCUS       DASSIK010000028         2780 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_993209, whole genome shotgun sequence.
ACCESSION   DASSIK010000028 DASSIK010000000
VERSION     DASSIK010000028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2780)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2780)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2780
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_993209"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            425..979
                     /locus_tag="VFI64_00480"
     CDS             425..979
                     /locus_tag="VFI64_00480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HET7241791.1"
                     /translation="MSVAEYKHILRIAGKDIEGGKKLIVALSQVRGLGYNLSQVIVQS
                     LNINPNMRVGFLSEREIADIETAIRNPAQIGVPSFYLNRRKNMDTGLDTHLLTSDLDF
                     TISNDIEREKTVYSWRGYRHMFGLKVRGQCTRTSGRKAGAVGVKKLPKPGPAGAPGAP
                     AKETPPASGTSTPKAAPEKVEPSK"
     gene            992..1486
                     /locus_tag="VFI64_00485"
     CDS             992..1486
                     /locus_tag="VFI64_00485"
                     /inference="COORDINATES: protein motif:HMM:TIGR01018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HET7241792.1"
                     /translation="MGDPKKPKKSYRRPRRIWTSDQLSSELYVVGSYGLRNKKELWKA
                     QTKVANFRNQARTLLALTTEDRHGKESNLLSFLNRLALVKDSATLDDVLNLKIEDILE
                     RRLQTIIMKKMAIKSPLQARQVVVHGFVSVGNRKVNLPGYLVKREEEPQILVHLEVPQ
                     IAKE"
     gene            complement(1527..2495)
                     /locus_tag="VFI64_00490"
     CDS             complement(1527..2495)
                     /locus_tag="VFI64_00490"
                     /inference="COORDINATES: protein motif:HMM:NF024248.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HET7241793.1"
                     /translation="MDRKNLVYDGDHQSLTKEIGVLEKASHMRILSNPVAWRILNLLS
                     REPLYPSQIAKELKIYEQSAYYYIRKLLSIGAITHVETSMVRGGTAKFYRTSCPAFGL
                     EMDWGEERIEGKKKQTKYHKVQLFFEDFIKDGSFNGLIVVGAPDPHGPYRSSSRDGHY
                     AIHLAFLLGTFCGIPRNFSVKLDADAKAEKVTTAENIISIGGPGTNIITAEFNRFLPI
                     RFNENNFWSGLTSPSGKSYTLDNHGLIAKIRNPFNDKSNVIVLAGVRSVGTKSSIIGL
                     TNYADGILRNYKKDLNWALVVQGFDMDSDGKIDNVDILDEVFLPIP"
BASE COUNT          846 a          524 c          568 g          842 t
ORIGIN      
        1 cgtcagaaat caatcatgca tctctcttgg tttgcaaatt taaaggtttc aaacatctat
       61 ttcaagatta taccttctta aacatcttca tgtttccagt tttatattaa ttattagtaa
      121 caatttttgt gcgagcccaa attaaacgtt ggtcttgagg tcaatacatc tacaattatc
      181 ctattattta gcttgtttcg tcgggagaat gacccaataa gaaataaatt tcatttccca
      241 ttatattgat accataatcg tttgaaacaa ttcagaacct tcggtattat ctgcggttat
      301 ggtcttcaac caaagtcact actttttcac tagttgttag gatgatccag tcaacatccc
      361 aaacgcatcc aagataaatg atgccagcat ggtttttatt gcggaatatt agtttattgc
      421 accgttgtcg gtagccgagt ataagcatat ccttagaatt gcaggcaagg atatcgaggg
      481 aggtaagaaa ttaattgttg ctttaagtca agttagaggt ttaggttata atctttctca
      541 ggtgatagtt caatcgttaa acataaaccc aaatatgaga gttggcttct tgagcgagag
      601 agaaatagca gacattgaaa cagctattag gaatccagct caaattggtg ttccaagctt
      661 ctatctcaat aggcgtaaaa acatggatac gggcttggac acacaccttc tgacttcaga
      721 tcttgacttt actatttcca atgatatcga aagagaaaag actgtgtata gttggagagg
      781 ttacagacat atgtttggac tgaaagttag aggacagtgt acccgaacat ctggtagaaa
      841 ggccggagct gttggagtaa agaaattgcc taagcctggt cctgccggtg cacctggagc
      901 tcccgcaaaa gaaacgcctc ctgcgagcgg aacaagtaca ccaaaagctg cgcctgaaaa
      961 agtggagcca tcaaaatagt cgtggtttag aatgggagat ccaaaaaaac ctaaaaaaag
     1021 ctatagacgt ccgagacgta tctggacctc agatcagctt agttcggagc tctatgtagt
     1081 tggttcctat ggtctgagaa ataagaaaga attatggaaa gcccaaacaa aggtggctaa
     1141 ctttcgaaat caggccagaa ctcttctcgc attgactact gaagatagac atggcaaaga
     1201 atccaacttg ctgtcttttt tgaaccgact tgcattggtt aaggactctg ccacccttga
     1261 tgacgttcta aatctcaaga ttgaagatat tcttgagagg aggcttcaaa caattattat
     1321 gaaaaaaatg gcaataaagt ctcctctgca agcaaggcag gtggttgttc acggattcgt
     1381 atcagttggg aacagaaaag tgaatctgcc tggatatttg gtaaaacgtg aagaagagcc
     1441 ccaaatactg gttcatttgg aagttccaca aatagccaaa gaatagcgta aaaaagtcca
     1501 cttattacat agttgccata tggtcgttaa ggaattggaa gaaaaacttc atccaaaata
     1561 tccacattat cgatcttgcc atcggagtcc atgtcaaagc cttgaactac caaagcccag
     1621 ttcaggtctt tcttataatt tctaagaata ccgtcagcat aatttgtgag gccaatgatg
     1681 gaagatttgg tgccaactga tcttactcca gccaagacga taacattgct cttatcattg
     1741 aatgggtttc ttatttttgc aattagtccg tgattatcca gagtataaga ttttccgcta
     1801 gggctagtca agccagacca aaaattattt tcgttaaagc ggattgggag gaagcggtta
     1861 aattctgccg ttattatgtt agtacccggt cctcctatag atatgatgtt ctctgccgtt
     1921 gtaacttttt cagcttttgc atcagcatct aatttgactg aaaagtttcg gggaatgcca
     1981 caaaacgttc ctaatagaaa ggcgagatga atagcataat gaccatctct tgaggaagat
     2041 ctatatggtc catgggggtc cggggcacct accactatta gtccgttaaa tgaaccatct
     2101 ttaatgaaat cctcaaagaa taactggact ttgtgatatt ttgtttgctt tttcttgcct
     2161 tcaattcgtt cctcacccca atccatttcc aatccaaatg ccggacatga cgttctgtaa
     2221 aatttcgcag tgccaccacg gaccattgat gtttcgacat gagtgatagc gccaatagag
     2281 agtagttttc ggatgtagta gtaggcactt tgttcgtata tctttaattc cttggctatc
     2341 tgagatgggt ataaaggctc tctcgagagc aaatttagta ttctccatgc caccggattt
     2401 gaaagtattc tcatatgact agccttttca agaactccga tttcctttgt caaggattgg
     2461 tgatcaccat cgtagacgag gttttttcta tccaaacgga ctgttcttgc cggcgaagat
     2521 tatatatgga ttttgtccgc tatatgtaaa tttataagct ttcaaacaaa ttccttctta
     2581 tctattccca atttgtgtat gtaaaactta taatgaattt tgtagtggtt agaatctatc
     2641 ttcataagta ttttaagcca gaattgtcga aaatctgcgt cttaacatgt gttcaataat
     2701 aggatattca gggataggag aggtcgctcc tatattggtt gacggactac aaagaatgga
     2761 atacagaggg tatgatagtg
//
LOCUS       DASSIK010000029         3164 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_891791, whole genome shotgun sequence.
ACCESSION   DASSIK010000029 DASSIK010000000
VERSION     DASSIK010000029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3164)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3164)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3164
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_891791"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            229..456
                     /locus_tag="VFI64_00495"
     CDS             229..456
                     /locus_tag="VFI64_00495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241794.1"
                     /translation="MITEDDLEVASLYRSVLEDRGHIVTLGCTAEECFKMYSKSLQSA
                     LMNRTVLRNVQPYDALLLDYKMPDTITSILD"
     gene            complement(572..1618)
                     /locus_tag="VFI64_00500"
     CDS             complement(572..1618)
                     /locus_tag="VFI64_00500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HET7241795.1"
                     /translation="MIIFFTSPIGLGHATRDLAICEKLCSLKREEVFFVSGWPAIDIF
                     SKNGYVAYNAYKPHKFNVSNSMELRSVLRWVLQYLLYYRKCKGIARDFIDKNKNGLIV
                     SDEDFASISIGENKNRKRILITDLIGTKFVKGLFSNIEVRMNRSLLNMIKKCDRVIIP
                     DYGENRDNISHVGPIVRNLSTSNRSELRKKFGMQRQTVLVSIGGTAAGKYLIEMAIRA
                     HKKLIMKMDVDMIVAYGPSLYKKGIYESKCKPIGFVNNLHEYVYAADLIISLAGRSTM
                     DESIVYGTPGIFIPVKNHFEQEENAGRLGYTYDDIFRLEHLIEEKIGTGRDNRTISPD
                     GAEMAAKIILQMLE"
     gene            complement(1934..2842)
                     /gene="tfb"
                     /locus_tag="VFI64_00505"
     CDS             complement(1934..2842)
                     /gene="tfb"
                     /locus_tag="VFI64_00505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017752.1"
                     /note="stabilizes TBP binding to an archaeal box-A
                     promoter; responsible for recruiting RNA polymerase II to
                     the pre-initiation complex; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription initiation factor IIB"
                     /protein_id="HET7241796.1"
                     /translation="MQKIITCLTCSLTEGKMVTDLESGEIVCSNCGTIATDIVEDNGR
                     EWRSFGDGENNRSRTGLPFSLAVHDMNLSTIIGKTNRDSSGRMIDTNMQARMNRLRTW
                     DARTQLSDSSLRNFKTAFMLLDKLKDKLGLPYSVIEKTAYIYRKVQEKGLVKGRSIYA
                     VLVACLYIVCREMGISRTINEISLASDIRKKAITKSYREIVVNLERNMPQVDYSQCIE
                     KIGSRIDSSEKAIRHATDLMKKVIECGFSAGKGPMGLAGAVLYISLQKDGMIVRQADM
                     AKAAGVTEVTIRNVSKDLKKRLHLIS"
BASE COUNT          939 a          650 c          469 g         1106 t
ORIGIN      
        1 aatgtatgaa actacaatta catgaaaaga tttcataagc ttgattcaag cttaaacttc
       61 ttatcatcta tcttcttttt tcagcgtgta catcattgct cttaaatgaa ataatgccaa
      121 actttatgga catcgctgcc aaatttggaa actatttgac tataagtata tttaatatga
      181 cggagtaagg tactgtagtt aattatcttg ttttcggcat cgcatttatt gataacggag
      241 gatgatctcg aagttgcttc tttgtaccgt tccgtgttag aggacagagg acatattgtt
      301 actcttggat gtaccgctga agagtgtttc aaaatgtaca gtaaaagcct acaaagcgca
      361 cttatgaata gaactgttct cagaaatgtt caaccgtacg atgccctcct ccttgattat
      421 aaaatgccag acacgataac atctattctt gactagacta cgccaaataa ttaaggtttt
      481 cgagatagat tagtttgaat atcaagtacc gaatcaaaca ttgacgcaga ttatccattc
      541 cagaatataa aatattttgt tagtctgatc attattcaag catttgcaga atgatcttcg
      601 cggccatttc agcaccatct ggagaaattg ttctgttatc tctgccagtt cctatttttt
      661 cttctattaa atgttccaac ctgaatatgt catcatatgt ataacctaac cttcctgcgt
      721 tttcctcctg ttcgaagtga tttttgacag gaataaaaat acctggagtt ccatacacaa
      781 tcgattcgtc catagtagac cttccggcta aagaaataat caaatcagcc gcatatacat
      841 attcatgcaa attatttaca aagccaatgg gcttacattt tgattcataa attccctttt
      901 tatataaaga cggcccgtaa gcaactatca tgtctacatc cattttcatt atcaatttct
      961 tgtgcgccct tattgccatt tcaatcaaat attttcccgc tgctgtccct ccaatactaa
     1021 ccaatactgt ctgcctctgc atgccaaatt ttttacgtaa ttctgatcta tttgatgtac
     1081 ttaaatttcg cacaattggt ccaacatggg atatgttatc tctattctcc ccataatctg
     1141 ggatgataac tcggtcgcat ttttttatca tattcagcaa agatcgattc attcttactt
     1201 caatgtttga aaataaccct ttaacaaatt tagttccaat tagatccgtt atcaaaattc
     1261 tttttctatt tttgttttct cctatagata ttgaagcaaa atcttcgtca ctgactatca
     1321 agccattttt atttttgtca ataaagtccc tagcaattcc cttacatttt ctataatata
     1381 gaagatattg caaaacccat cttaaaacag aacgtaattc catagaatta ctcacattaa
     1441 atttgtgagg tttgtacgca ttataagcaa cgtaaccatt ttttgaaaaa atgtcaatgg
     1501 caggccaacc agagacgaaa aaaacttcct ctcgtttgag agaacataat ttttcacaaa
     1561 ttgcgaggtc ccgtgtagca tgtcccaatc ctatcggact cgtaaagaat attatcactc
     1621 atacacttca aatctgcgta caatctaaat atttaggtct gttaatttcg tacaaatcca
     1681 acataaaagt agtggaatga ttttgattct tagctaattt gaaatattat tttcataact
     1741 ttaaccgagc cccaaaatta gatccacctt agatactaaa cacggaatta tttgcaccaa
     1801 aatattattc tcagtagttt taattattct gacaaagtgc taacttttta gtattctcca
     1861 aatgtttcaa ttatagtcta agtgtacata taatattata gtttgaccta ttaagaagct
     1921 tctggaaaaa tatctagcta atcagatgaa gcctcttttt tagatctttt gatacatttc
     1981 ttattgttac ttctgtaact cctgcagctt ttgccatatc tgcctgtctc acaatcattc
     2041 catctttctg tagtgagata tacaatactg ctccagcaag tcccattgga cctttgcctg
     2101 cagaaaatcc acattcaatg acttttttca ttagatctgt agcgtgccta attgcctttt
     2161 cgcttgagtc gatcctactt ccaatttttt ctatgcattg agagtaatct acttggggca
     2221 tgtttcgttc taaatttact actatctctc tgtagctttt tgtaatagct ttctttcgta
     2281 tatcacttgc gagcgaaatt tcgttaatgg tccgggatat acccatttcc ctgcatacaa
     2341 tgtatagaca cgcgacaaga actgcatata ttgaccttcc cttaaccagc cctttttctt
     2401 ggaccttcct gtaaatgtat gcagtttttt cgataactga atatggcaac cctagtttgt
     2461 ccttcaactt atccagcagc ataaaagccg ttttgaaatt tcgtagtgag ctgtcactca
     2521 attgagttcg agcatcccat gttcgtagtc tgttcattct agcttgcata ttcgtatcga
     2581 tcatccgtcc tgatgaatct ctgtttgttt taccaatgat tgtagacaaa ttcatatcat
     2641 gtactgcgag tgaaaaaggc agtccggttc tcgacctatt attttctcca tccccaaatg
     2701 atctccattc tcttccattg tcttctacta tatcagtagc aattgttcca cagttactac
     2761 acacgatctc accagattcg agatccgtaa ccatcttacc ttcagtaagg ctacaagtca
     2821 aacacgtaat tattttttgc attataacgt atgaagttat tattatatac ggctaagata
     2881 tatataaata ttgtaccgtt atctgcaaat attactaata tggctgcaac taagtaattg
     2941 ctttcagcat catccaaatt attacggtat gtttacacag ttataagggg actgtcgtcg
     3001 cagtaggcta aaagtatggc gaggtaggtt aaacccacat aatattttcc tctgtttagc
     3061 cttttgcata cgcaaatgta aatgttgttt cgtttttgga tgaaggctca tgcactaaaa
     3121 ctaaacccaa cattctagaa catatctcgg gtcctccacg gaaa
//
LOCUS       DASSIK010000030         2191 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_203120, whole genome shotgun sequence.
ACCESSION   DASSIK010000030 DASSIK010000000
VERSION     DASSIK010000030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2191
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_203120"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1430)
                     /locus_tag="VFI64_00510"
     CDS             complement(<1..1430)
                     /locus_tag="VFI64_00510"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HET7241797.1"
                     /translation="MWIRSICGHKDQVPEDTSGDQVFDFIFFIFFTSLLLFTISINGS
                     TYAATQVCTKYQCKTPSVSDPNLKLEIVYQGNYTAANYTYSGSKLHLSPVTKMAFLGY
                     NDILMLNKNDGKVVRIVNHTLLPQPLLDLSVANAWERGLLGIAVGRDAGKVHVFLYYT
                     ESKTGDGSDICPTIFCAQSTEPIQNKLYRYELKNNKLINPKLLFSAPKSNVASHIGGA
                     LDIGPDNNLYLIIGDIHGYQNKTTTLAQNYKNGLFPDGRAGILRLTQDGKAVGGGLLG
                     KKYPLNLYYAYGIRNGYGLDFDPVSGKLWDTENGPEYGDEINLVNPGFDSGWNVIQGI
                     WKGRSLSNIGKIVLDQPQGLVNFGGRGKYRAPEFVWNNTAAPTAVRFLNSDKFGKKYE
                     NDLFVASFNRGVIYHFELNENRTSLKLSGAFNSTLAEDQNPKDLIFARGLGGITDMHV
                     GPDGNFYVLSRYFSKPTIFKISNTNET"
     gene            complement(1755..2006)
                     /locus_tag="VFI64_00515"
     CDS             complement(1755..2006)
                     /locus_tag="VFI64_00515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241798.1"
                     /translation="MSTSLATYGIQLVLLRGREDERNLLLSFKKRCLVGGIYSPILNT
                     CMKKILTMLMSLLTVAVSMSALGLAIHGGAEAGLAGEKK"
BASE COUNT          630 a          472 c          390 g          699 t
ORIGIN      
        1 gtttcatttg tatttgatat tttaaaaatt gtgggtttgc taaaatatct tgaaagtaca
       61 taaaagttac catcagggcc tacgtgcata tccgtaattc cacctaatcc ccgggcaaat
      121 attagatctt taggattttg atcctctgct aacgtactat tgaatgcacc ggatagtttc
      181 agtgaggttc tattttcatt caattcaaaa tgatatatta ccccacgatt aaaagatgcg
      241 acaaataagt cattttcata tttcttccca aatttgtctg aatttagaaa cctgactgct
      301 gtaggtgccg ccgtgttatt ccagacaaac tccggtgctc tatatttgcc tcttccacca
      361 aaattgacca aaccttgcgg ttggtcaagt acaattttac caatattcga taaactgcga
      421 cccttccata ttccctgaat tacattccag ccgctatcaa acccaggatt tacaagattg
      481 atttcatcgc catattcagg tccattttct gtatcccata attttccaga gacgggatca
      541 aaatctaagc catagccatt tcttatacca taggcatagt aaagatttag tggatatttc
      601 tttcccaaca agccacctcc aacggctttc ccgtcttgag taagcctgag tatccctgct
      661 ctaccatctg gaaatagacc atttttatag ttctgagcca gtgttgtagt cttgttttgg
      721 tatccatgga tgtcgccaat tataaggtat aggttattat caggaccaat atccagcgcg
      781 ccacctatgt gagatgcaac gtttgatttg ggggcagaga ataaaagttt gggatttatg
      841 agtttgttat ttttcaattc atacctgtat aatttatttt gtataggttc tgtggattga
      901 gcacaaaata ttgtaggaca aatatcgctt ccgtcaccag tctttgattc agtgtaatat
      961 aaaaaaacat gtaccttgcc cgcatccctc ccgactgcta ttcccagaag tccgcgttcc
     1021 cacgcgttag caacgctaag gtcaagtaac ggttgaggta acaaagtatg atttacaatt
     1081 cttaccacct tgccgtcgtt cttgtttaac atcaagatat cattatatcc taggaatgcc
     1141 atcttggtaa ctggagatag atgtagtttt gatccagaat atgtataatt tgcggctgta
     1201 taatttcctt gatacacgat ttccagtttc agattaggat cactaacgct aggggttttg
     1261 cattgatatt tggtacatac ttgtgttgca gcgtaagtgc ttccgtttat agatattgta
     1321 aataataata gactggtaaa aaatatgaaa aatatgaaat caaagacttg atcgcctgac
     1381 gtatcttctg ggacctgatc cttatgtcca caaatcgacc tgatccacaa gtcagacaat
     1441 ctcaaccttg agacaacaaa aagaaactag tatggaagat atatccctga gccccctgct
     1501 ccattgagaa ctcattctct cccgctgcga tcgcaattta actaccagtt gattatctcg
     1561 cagcggtgat tttaaaactt taatgtctaa attgtttaag tggtagaata ggtaacggtc
     1621 atgttatttc ttggctaccg ttggtaggtc ggtattaact agtagattcc tcaatcttca
     1681 atatcgtgct tggaatgggt caatctccat gaatcctact agtgccatct tgatctttgt
     1741 ctttagatgt ctcttcattt cttttctccc gcaagtcctg cttctgcacc accatgtatt
     1801 gctagtccca acgccgacat tgacaccgct accgtcaata agctcattaa catggtaagg
     1861 atctttttca tacatgtatt tagaattggt gagtatatac ctcccactag acaacgtttc
     1921 ttaaaactaa gcagcaaatt tctctcatcc tccctccctc tgagtagcac gagctgaatg
     1981 ccataagttg caagtgatgt cgacactttt caaccaagat ccccatcctg tcttatgata
     2041 tataatcaat gaatcctatg aagattaaag agcgtcgcag ggaagctcgt accaagatgt
     2101 ctaaagacta ataacgaact aataacagcc agagaaaaag atgtttccca agatcaaccc
     2161 tgatcgtcca gtagtctata agatggggct t
//
LOCUS       DASSIK010000031         3538 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1088282, whole genome shotgun sequence.
ACCESSION   DASSIK010000031 DASSIK010000000
VERSION     DASSIK010000031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3538)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3538)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3538
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1088282"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..101)
                     /locus_tag="VFI64_00520"
     CDS             complement(<1..101)
                     /locus_tag="VFI64_00520"
                     /inference="COORDINATES: protein motif:HMM:NF018961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dodecin domain-containing protein"
                     /protein_id="HET7241799.1"
                     /translation="MAVAKIIEIVGSSEIGWSEAAQEALDEAKKTING"
     gene            555..884
                     /locus_tag="VFI64_00525"
     CDS             555..884
                     /locus_tag="VFI64_00525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241800.1"
                     /translation="MRKEFIVTKIEAAQDGSPYVYIGLIDPNDYKSGEAKQLNPFGPR
                     MMAFSSPEDLMKNLPKAMGNVTGMMGGNINDSPTFKFSIREYEEMGLKVGEKVSIEIK
                     KSENSGI"
     gene            complement(1012..2334)
                     /locus_tag="VFI64_00530"
     CDS             complement(1012..2334)
                     /locus_tag="VFI64_00530"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HET7241801.1"
                     /translation="MTSFKELGLSAEVLRALDENGFKDPFPIQELSIPLILKGMDVIG
                     QAHTGTGKTAAFSLPILNNIKRNGPIQALILVPTRELAMQVTNEIRKFSKYVGIRTLA
                     VYGGQSMSLQITQLRKGVQIVVATPGRLIDHVKRGTIQLEAAKFVVLDEADRMLDMGF
                     IDDIKFILFYVDEDRQTCLFSATIPPEISRLAQDYMKNPHEVKLNEEEISLDTIDQSY
                     LIVEERQKFKHLCNFIKSRDEKQTIVFAATKQRTQRLAIELKQQGLRAITIHGDLSQK
                     QRDDSMHRFRTGSEDILVATDIAARGIDVPAIGHVINYDIPDDPMIYFHRIGRTARAG
                     GTGKAISLVSQDRVDDFTRILKNTELPIKRLNDEMGIEVPRIQSHPRTNWRRNSGYGG
                     RYGNGGGYRNRQGSNRFSSADSSRRRYGYGARSERRPSYNQRSSYDRM"
     gene            2552..3370
                     /locus_tag="VFI64_00535"
     CDS             2552..3370
                     /locus_tag="VFI64_00535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241802.1"
                     /translation="MMSEDGNLQEKKLRGSGGFVLAYVNDDEQKKGNLGGPELFLAGI
                     GRLPSERFVKYHCNKCDKDFEGSPAIRYDNPNEDLGEDVILVEKGEYKCHACNTIIAQ
                     YRKFDSASNPSQNNSNPQVEETQPEVSTESDEAPTKILEVDNNSQPVMVPANSKSGFV
                     SIESLLGMPAYDCDAMLVGSIKEIGLRRSTRGKMEINFKVSKDQKTNDNEPVEVSWNS
                     ISKIGDIILLGETTDEIQSQDNTGAQKVRGKCPSCSYVNETDAVYCADCGKKID"
     gene            complement(3388..>3538)
                     /locus_tag="VFI64_00540"
     CDS             complement(3388..>3538)
                     /locus_tag="VFI64_00540"
                     /inference="COORDINATES: protein motif:HMM:NF024938.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="acetate--CoA ligase family protein"
                     /protein_id="HET7241803.1"
                     /translation="NALVDCLLRLSQLVTDFPEIEEFDMNPLLVLEEGKGACAVDVRI
                     GLGNK"
BASE COUNT         1103 a          695 c          639 g         1101 t
ORIGIN      
        1 ccattaattg tcttctttgc ttcgtctagt gcttcttgag ctgcttcact ccaacctatt
       61 tccgagcttc caactatttc tattattttt gcaacagcca atacatattg aacgaactta
      121 tggaatataa cacttcacaa aatgctggcc atgatattaa taatagctaa tttcatgctc
      181 aaaggtatcc atggaactaa catggtatca gcttaatttg agtaaaatta gattataata
      241 atagttaatt ctacaccagt tcttctaagc ctcatctagc gactaattct cagccctttg
      301 tgtactcttt taggacctag agaatctcgt gtgcaatatc tcgtgcaatc tcaagacgta
      361 attatcggga ttgacaatat tgttcctgtc ccaagaattg aataagataa ttataaagca
      421 actaaaagag gtatcaaact agtttgaaat taagaacgtt caataaaatt caacagccaa
      481 gtgcataatc ccagtacccg attagcccct aatccatatc ttaaaaagac gtcttatagt
      541 atcttaaata agaaatgaga aaagagttta tcgtcacaaa aattgaagca gcacaagatg
      601 ggagtcctta tgtttacatt gggctcatcg accctaatga ttacaaatca ggagaagcaa
      661 aacagctaaa tccttttggt cctcggatga tggcatttag ctctccagag gatttgatga
      721 aaaatttgcc taaagccatg ggaaatgtga caggaatgat gggcggtaac attaatgatt
      781 ctccgacgtt caagtttagc ataagggaat atgaagaaat gggtctaaaa gttggagaaa
      841 aagtttcaat agaaattaag aaatcggaaa acagcggaat ttaatacgaa aatcccattt
      901 taattaattt attgatttca caagctaata aatgacggat atccagacta aagcaataaa
      961 atttctctag tcacgcctcg agaggatttt aaaaagctaa ttttctcttg gctacattct
     1021 atcgtagcta gatctctgat tatagctagg tcgtctctca gaacgtgctc catatccgta
     1081 tcttctcctg ctagaatcag cactagaaaa tctattggat ccttgcctgt ttctgtatcc
     1141 acctccgttt ccatatctac cgccataacc tgaatttctc ctccaattgg tccttggatg
     1201 actctgaatt cttggtacct cgatacccat ttcatcgttc aatcttttga ttggaagctc
     1261 agtatttttc aatatcctgg taaaatcatc taccctatct tgagaaacta aagaaattgc
     1321 cttgccggtt ccacccgctc tagctgttct acctattcta tggaagtata tcattggatc
     1381 atcaggaata tcatagttga ttacatgtcc aatagcaggt acgtcaattc ctcgtgcagc
     1441 tatatcggtg gcgacaagga tatcttcact gcctgtcctg aatcggtgca tcgaatcatc
     1501 tctttgcttc tgtgacaaat caccatgaat tgtgattgcc ctaaggccct gttgtttcag
     1561 ttcaattgcc aatcgctgtg ttctttgttt tgtggcagca aaaactatag tttgtttttc
     1621 atctctactt tttatgaaat tgcaaagatg tttgaatttt tgtctttctt ctacaatcag
     1681 gtaggattga tctatagtat ctaaactaat ctcctcttca ttgagcttca cctcgtgagg
     1741 atttttcata taatcttgtg ccagtcttga tatttctgga ggaattgtcg cagaaaataa
     1801 acatgtctgc ctgtcttcgt caacataaaa aagtatgaat ttaatgtcgt caatgaaacc
     1861 catatctagc attctatctg cttcgtcaag aacaacaaat ttagctgctt ccagctgaat
     1921 tgtacctcgc tttacatggt caattaatct accaggtgtg gcaactacaa tctgcactcc
     1981 ttttcttaac tgagtaatct gcaatgacat gctttgtcct ccatatacag ctaaagtcct
     2041 tatccctaca tatttggaaa acttcctgat ctcgttggtt acctgcattg ctaattctct
     2101 cgtcggaacc aatatcaacg cctgtatcgg tccattcctt ttgatgttgt tcaaaatggg
     2161 aagtgaaaac gcagcggtct tccctgtccc tgtgtgagct tgaccaatta catccatacc
     2221 ctttaaaatc agcgggatgg ataattcctg aataggaaag gggtctttga atccattttc
     2281 atctagtgcc cttagcactt ctgcacttaa acctaattct ttaaatgatg tcattttatc
     2341 ttattccttt tttatttctt cagatttgta acaaaagtta cggatgacgt gaaaagcaaa
     2401 tatcattact ttacaaatcc gccgtgcttc ctttgtatac ttatagtgta ataatagagg
     2461 gatataaggt atgcgaatct aaaaagggat taacggacat tactgggtga gaagaatgtt
     2521 ttaaataact tcagaaaata tctataaaaa catgatgagt gaggatggta atttacagga
     2581 gaaaaaattg cgtggctcgg gtggctttgt actcgcttac gttaatgatg atgagcaaaa
     2641 aaaaggtaac ttaggcggac cagagttgtt cttagctggt ataggtagac ttccatcaga
     2701 aagatttgta aaatatcact gtaacaaatg tgacaaggat ttcgaaggtt ctcctgccat
     2761 cagatacgat aatcccaatg aagatctcgg ggaagatgta atcttagttg agaagggcga
     2821 atataagtgt catgcatgta atacaataat agctcaatac agaaaatttg actcggcttc
     2881 taatccttca cagaacaact caaatcctca ggttgaagaa acacaacccg aagtatctac
     2941 ggagtcagac gaggcaccaa caaaaattct tgaagttgat aacaattccc aacctgtcat
     3001 ggtacctgct aatagcaaaa gcggatttgt ttcaatagag tcacttcttg gaatgcctgc
     3061 atatgactgt gatgcaatgt tggtaggcag catcaaggaa atcggattac gaagatcaac
     3121 tcgtggtaag atggaaataa atttcaaagt ttctaaggat caaaaaacaa acgataacga
     3181 acctgttgag gtttcatgga atagcatttc aaaaatagga gacataattc ttctcggcga
     3241 aactacagat gagatacaat ctcaagataa tactggagct cagaaggtgc gcggtaagtg
     3301 tccatcttgt agctatgtta atgaaacaga cgctgtatac tgtgctgatt gtggaaaaaa
     3361 gatagactga aatttgtgca cttaacttta tttatttcca agacctatcc taacatccac
     3421 tgcacaggcc ccctttcctt cttccaatac taataaagga ttcatatcaa attcttcaat
     3481 ttcaggaaag tcagttacta gttgtgagag acgcagcaag cagtctacaa gtgcgttg
//
LOCUS       DASSIK010000032         2255 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_994257, whole genome shotgun sequence.
ACCESSION   DASSIK010000032 DASSIK010000000
VERSION     DASSIK010000032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2255)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2255)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2255
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_994257"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..918
                     /locus_tag="VFI64_00545"
     CDS             <1..918
                     /locus_tag="VFI64_00545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241804.1"
                     /translation="GIKVVYDNHQFHTSSWLNAGRGTGFPPYFFTDHALYEQDSGGTP
                     KSAVSKTWWTNWWNNAMTVNGTDGWTLQLDFLKKIVNITDKHPSTLGYEILSEPQVHS
                     EDQWAKIGKYNTFMTDELRKLTNKTIIYSMNIPIDLKSSINVDATNLAKMTPQNKQNV
                     VFKFSLYGIPDDGYQSDKLQLFENASRIAGVPLYIGEWNNVKRVETYNDHGEKIWVID
                     DVQSDISQADANAIVGKFRDIGIWGLAYWEWSFVPNDTPNFNLVNVTSDKVTGKETMQ
                     PTEYFKIIENAYKELFVQQPTGVPASKLS"
     gene            1160..1684
                     /locus_tag="VFI64_00550"
     CDS             1160..1684
                     /locus_tag="VFI64_00550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241805.1"
                     /translation="MLHSAAQMKANWSCTACGMYSGRRYCVQRHIDNIHKGKANAIPF
                     IEYLVGRREGLYPPNARPSYGSQKQRTLVEKAEDEFVSMLAHRAAESITPAVGDPAYR
                     AVSQGVLNNINARQSLLHLGELLEQVKFFQNKSRPNVPAAHGTTSKGDTEYDLLHKDD
                     LLPLRRPNILQDNP"
     gene            1816..>2255
                     /locus_tag="VFI64_00555"
     CDS             1816..>2255
                     /locus_tag="VFI64_00555"
                     /inference="COORDINATES: protein motif:HMM:NF014040.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HET7241806.1"
                     /translation="MEICKPKYSFSSGTEIYHRNRRDSIQRFDRVERTSDGEYEVVDF
                     KTGSVYETKNSIKDNFQMNVYAIATEKLYGKLPRYTSLFYLKKDKIVTNKIEVPQLAK
                     IKKILEEKVHSILEEDFKPTPSFEACRKCDYQMICDSRKMQQTI"
BASE COUNT          772 a          407 c          477 g          599 t
ORIGIN      
        1 ggaataaagg tagtttatga taaccatcaa ttccacactt catcttggtt aaatgctgga
       61 agaggtacgg gctttccgcc ctattttttc actgaccatg cactttacga acaggacagt
      121 ggaggaacac ccaagtcagc cgtttcaaag acttggtgga ctaactggtg gaacaatgcc
      181 atgactgtga atggtacgga tggatggact ttgcaattgg atttcctgaa aaagatagtc
      241 aatattactg acaaacatcc aagtacactt ggatatgaaa ttttaagtga gccccaagtg
      301 catagtgaag atcaatgggc gaaaatagga aaatacaata cattcatgac cgatgaattg
      361 cgcaagctta caaacaagac aattatttac agtatgaaca ttcctataga ccttaaaagt
      421 tcgataaatg ttgatgctac aaatctggct aaaatgactc ctcaaaacaa acagaatgta
      481 gtctttaagt tttcgctcta cgggattcct gatgatggtt atcaaagcga taagcttcaa
      541 ttgtttgaaa atgcaagtcg gattgccggt gtcccgttat acattggaga atggaataat
      601 gtaaagcgag tggagaccta taatgatcat ggcgaaaaaa tatgggtgat agatgatgtt
      661 caaagtgaca tcagccaggc agatgctaat gcgatagtag gaaaattcag agacattggc
      721 atttggggtt tggcttattg ggaatggagt tttgttccca atgatacacc caactttaat
      781 ctggtcaatg taacgtctga caaagtgact ggaaaggaga ccatgcaacc aaccgaatat
      841 ttcaaaatta tagaaaatgc ttacaaggag ttatttgttc aacaaccaac tggtgtgcct
      901 gcttcaaaat taagttgaca tagatacaac tactgcctag ttcatctcga cattcacttg
      961 ttcatatatc gtcatgccag tgattggtat tgaactctcc taaaaaaaag ctcttcgaat
     1021 aatctagatt tttgttaaag cctactctga tgctgaatac catttgtagt attcacatga
     1081 tgttgtatcc agataaaatt ccgtatctta tattatgctc aactcgaaac aagactcaag
     1141 actatgctta aataatccgg tgctacatag tgcagcacag atgaaggcaa attggagctg
     1201 tactgcatgc ggcatgtatt ctggacggcg atattgcgta caacgtcata tagacaacat
     1261 tcacaagggt aaggccaatg caatcccatt tatagaatat ctagttggcc gaagagaggg
     1321 attatatcct cccaatgcaa ggccttccta tggctcccag aagcagagaa ctctagtaga
     1381 gaaagcggaa gatgaatttg taagtatgtt agcccacaga gccgcagaat cgattacacc
     1441 tgcggttggt gatcctgctt atcgcgctgt tagtcaaggc gtacttaata atattaatgc
     1501 tcgtcagtcc cttcttcact tgggagaact tctcgaacag gttaaatttt tccaaaataa
     1561 aagtaggccg aatgtcccag cagctcatgg aacgacaagc aagggcgaca cagaatatga
     1621 tcttctgcat aaggatgatc ttttgccgct acgtcgacct aatatattac aagacaatcc
     1681 ttgaaattgt gaagaggcat aggaagctga atactggaat ataacgcatt gaagaccgga
     1741 acaggttcag ttgttctaaa aaaacgaagg aaaagctaag caaaaagata gggacatgat
     1801 aaagacttat ctggagtgga gatctgtaaa cccaaatatt cctttagcag cggaacagaa
     1861 atttaccata gaaataggag ggattccatt caacggttcg atagagttga aagaactagt
     1921 gacggagaat acgaagtcgt tgatttcaag accggtagtg tgtatgaaac caagaattca
     1981 atcaaagaca attttcaaat gaatgtttat gcgatagcaa ccgagaaact atatggaaaa
     2041 ttgccaagat atacgtctct tttttacttg aaaaaggata aaattgtaac aaataaaatt
     2101 gaagttcccc agttggcaaa gattaagaag atattggagg agaaagtaca ttcaattcta
     2161 gaagaagact ttaaacctac tcccagcttt gaagcatgca gaaagtgcga ctaccagatg
     2221 atctgcgata gcagaaagat gcaacaaaca attat
//
LOCUS       DASSIK010000033         2133 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_994751, whole genome shotgun sequence.
ACCESSION   DASSIK010000033 DASSIK010000000
VERSION     DASSIK010000033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2133)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2133)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2133
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_994751"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            129..1847
                     /locus_tag="VFI64_00560"
     CDS             129..1847
                     /locus_tag="VFI64_00560"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HET7241807.1"
                     /translation="MKPIILTIDDDPGVLIAVKRDLERQYEKRFRIVGSDSGVKALEL
                     VQKLKVQNEVLALAIADQRMPLMMGVEFLQHLTNIFPDAKRVLLTNYSDREAIMMSIN
                     KVRIDYYLEKPWEPPEVNLYPPLNDLLDDWWACFKPPFEGVRVIGPRWSLKSHEITDF
                     LARNGITFQFLDIEVNAEAHTLLSSLIGSDSAASKATDPQTLMHFPYVIFPNGSHLAE
                     PTITEIAEKIGLKTRAQMAFYDLIIIGAGPAGLAAAVYGASEGLHTLVIEREAPGGQA
                     SFSSNIENYLGFPSGLPGISLARRAVAQAIKFGAEILEPQEVAGIRSEGQYRIARLTD
                     GTEIRCNVMLIACGATYRKLKGVKEIDRLTGAGVYYGASMVDALNYKQNDVYIVGGGN
                     SAGQAAVHFAKYARTVTLVVRDNSLLEKMSQYLVHQIEETGNIKILLNSIVSEVRGER
                     MLDSLTVTNTKTGEQQFFKADGLFIFIGADPNTNWLGDSIKLDSHGFILTGSDLVQDS
                     SKITEAWPLERLPLLLETIIPGIFAAGDVRHGSVKRISAGVGEGSAAIQLIHDYLSKG
                     DSYSPS"
BASE COUNT          689 a          388 c          463 g          593 t
ORIGIN      
        1 tagccggcag cagtatcaag taaataagaa cagaacgtag tttaacttgg gttagctgat
       61 gactcggcac agaagggaaa aaacgtttat tttatacttg taagagcttg gggtgaaggc
      121 agcatgaaat gaagcccata atactgacaa tagatgacga tccaggagta ttgatagctg
      181 ttaaaagaga cttagaaaga caatatgaaa agcgttttcg aatagtcggt tcagactcgg
      241 gagtaaaagc tctggaatta gtacaaaaat taaaggtaca aaatgaagtt ctggcattag
      301 ccatagctga ccaaagaatg cctctgatga tgggtgtaga atttttacaa catttaacca
      361 acatttttcc agacgcaaag cgtgtgctgc ttacaaatta ttcagataga gaagcaatta
      421 tgatgtcgat aaataaggtc aggattgatt attatttgga aaagccatgg gagccacctg
      481 aagtcaatct ctatccgccc ctaaatgacc tactagatga ctggtgggca tgtttcaaac
      541 ctccgttcga aggggtaagg gttattggac ctagatggtc actgaaatca catgaaataa
      601 ccgattttct cgcgagaaat ggaataacgt ttcaatttct agatatagag gttaacgcag
      661 aagctcatac tttactttcc tctctaatag gatctgatag tgcagcttca aaggcgacag
      721 atccacaaac gttgatgcat tttccatacg taatttttcc gaacggatcg cacctggctg
      781 aaccaacaat tacagaaatc gctgaaaaaa ttggtttaaa gactcgagcg caaatggctt
      841 tctacgattt gattattatt ggtgcaggtc cggccggtct ggctgcggca gtatatggtg
      901 cctcagaagg tcttcatact ttagtaatag aaagagaggc tccaggtggt caagcgagtt
      961 tcagctctaa tatcgagaac tatctagggt ttccatcagg cttacctggt attagtcttg
     1021 ctagacgggc tgtagctcaa gcgattaagt ttggtgccga gatacttgag ccgcaagaag
     1081 ttgcaggcat aagatccgaa ggtcaatatc gaatagctag attaactgat ggaactgaaa
     1141 taagatgtaa tgtaatgtta attgcttgtg gtgcgactta ccgcaaactt aaaggagtga
     1201 aggaaattga tagattaact ggagcgggtg tctactatgg agcatctatg gtagacgcat
     1261 taaactataa acaaaatgat gtatatatcg tcgggggtgg aaactcagca ggacaggcag
     1321 cagtacattt tgcaaagtat gctagaacag taacacttgt tgtccgtgat aattccttac
     1381 ttgaaaagat gtcacagtat cttgtacatc aaatagaaga aacaggaaat atcaagatac
     1441 tattgaattc aattgttagc gaggtaaggg gagagcgtat gttagatagt ctcacagtaa
     1501 ctaatacaaa aacaggcgaa cagcaattct ttaaagcaga cggtctcttc attttcatcg
     1561 gtgctgatcc taatacaaac tggctcggcg acagcataaa attagattca catggattta
     1621 ttctgactgg ttctgacttg gttcaagata gctctaaaat aacagaagcc tggcccctag
     1681 agcggctacc ccttctcctc gaaactatta tacctggaat atttgctgct ggagatgtcc
     1741 gacatggttc tgtaaaaagg atctctgcag gagttggtga aggctctgca gctatacaac
     1801 taattcatga ctacttaagc aagggtgatt catattctcc ttcctaactc aattgaaccc
     1861 catcatccaa aggccataga acctatcaca ctgcaatggc caaatacgat aaaactatca
     1921 ctgaaatgtg tatcaacctg ttgtatttgt gatcctatct atagtaataa ataatatttt
     1981 tgtacatata actggtaatt ttcatagcgt cacgtcacat gccaaaagag taactatttt
     2041 cttaagaata tctttttctt tgagccgaat acatgtaatc gtctaacaat cagatttatt
     2101 gctaaataag cgaatgacga tgcgatgagc gat
//
LOCUS       DASSIK010000034         5663 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_892923, whole genome shotgun sequence.
ACCESSION   DASSIK010000034 DASSIK010000000
VERSION     DASSIK010000034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5663)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5663)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5663
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_892923"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            349..873
                     /locus_tag="VFI64_00565"
     CDS             349..873
                     /locus_tag="VFI64_00565"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HET7241808.1"
                     /translation="MIFDLFSNWLSKGRPVQKINTIKLSKKDASNELTKYGEDMANAK
                     RYDEALTLFDKAIEINPNNDMAWGDKALILDKKGQTVEALTNFSRAISINPNNSITWH
                     NKGLTLLRMRKFKESIECFDTALKINGNYAKAWYNKGRAFEMLGEKNKVQPCLDKARK
                     LDPLLYSKLTRAKF"
     gene            1031..2020
                     /locus_tag="VFI64_00570"
     CDS             1031..2020
                     /locus_tag="VFI64_00570"
                     /inference="COORDINATES: protein motif:HMM:TIGR00180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HET7241809.1"
                     /translation="MSYLGILQDIRICKISPSKYNLREANNVEELAESIKHYGLLQPI
                     VIRPVLLGYEVVAGNRRFAAAKLLKLRKLSCHVIELSDKEAYEVGLVENLQHKTMHPV
                     EESIAFKKYVEGYGWGGVSELAKQIGKSQEFVTKRIQLLLLPKEIQEEIIRQRITPSV
                     ALELLPFDAESVREIGEFVIKNALTKIEARNLVKRFTKEDLIDDKFTSNPNDDDEFKH
                     TDHSTHERELYLLDKALMKSITIMKSTLVSFDDIINSVDYNWILKELLMQYRLIIHGD
                     IDTFLKLRKRLKIKMPPNYLGSDKIDKTLIDKSTDDESEKAAKSIHLGTAFLS"
     gene            2246..3814
                     /locus_tag="VFI64_00575"
     CDS             2246..3814
                     /locus_tag="VFI64_00575"
                     /inference="COORDINATES: protein motif:HMM:NF012686.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:solute symporter family protein"
                     /protein_id="HET7241810.1"
                     /translation="MADIPISYPIIVMAFVAATAVIGVLAVKFVKKSSKHYIVAGKSL
                     SLFFVGTMLVSEAVDGNASLGNVALSYQFGFWAGAAIPLGLAICLVLTGLFFGRIFNR
                     MNMITLADFYFRRYGNTAEIMSGTLMSISFIVLVAGNLAASGYILSVVLSIPLIYAML
                     ISTAVVLIYTYFGGLYSCAYTDIFHIYLAVVGFWLGFLYFIGPWSPIPGGLETIIANA
                     PAGFMDMSGLTDLKSGALINWAAIMSLGLGDIVALDFMERVFSARGGRTAQKSCYYAA
                     GLTMLILVPTTMIGIIGHTLEPNNSDPFTLYPIVAIKHVPEVIGILMLVSTISCGMST
                     ANGGTLAIASVMSRNILQRNIIPRLKRRTMTDRQLLLATRLLVIPMFFTAFALGAIIP
                     RPGVYLVLAFDIVLAGCFVPLVMGTFWKKSTSAAAVASIVVGSTLRMILYFTLSTVSP
                     DSPYFAYLGLDTIIPPIVSFVVFVVVSLATYKRSPSRHDVIYLIPSEEDVVSGADVSK
                     WVNPIDVRKIPSRR"
     gene            3815..4336
                     /locus_tag="VFI64_00580"
     CDS             3815..4336
                     /locus_tag="VFI64_00580"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HET7241811.1"
                     /translation="MVKENGWINIAQQPNEESTNYDNQKVQKILIAIDKSGYKDKIIG
                     YSITLAKALGASITAIHVLDKSSFGMVGDLLSYYRGGNIEEYEKALKKQAEEFLNEVK
                     LLVEKGGVKTCVDVVISKSSAAEGIIDFAKEADADLIIIGTKGLTGVERFLMGGVATS
                     VIRHAHCPVLAVR"
     gene            complement(4449..4628)
                     /locus_tag="VFI64_00585"
     CDS             complement(4449..4628)
                     /locus_tag="VFI64_00585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241812.1"
                     /translation="MKKFGCGACGETFKDRFGLIEHAEAVHDKKTTYLCIVCDESFEN
                     EPSFKLHMLRNHKFV"
     gene            5002..5289
                     /locus_tag="VFI64_00590"
     CDS             5002..5289
                     /locus_tag="VFI64_00590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241813.1"
                     /translation="MECPHCRAKFEPNMRYYPIGLNRHGEYGYVLWQSCNNCGKFILC
                     LKETKSLSERPYEIDGSHLLLQKETEKQHRESAKEGEINKKPKKGRLKGKN"
BASE COUNT         1805 a          990 c         1153 g         1715 t
ORIGIN      
        1 catcgtttcc cttataagaa tcaccataaa actccattcc catgtttttt ctaaggtacc
       61 taattggcaa gtatttctta aatatttcta aacatacacg cttggtagac gaatcgcaaa
      121 tttaaataca atgagttcca attccaagca tggatttgtc aggggtctac gcaatgttta
      181 ctgccatact tatctcgagt gtcattcttt tgtacttcgg aactatcgga ttaaagaacg
      241 aacctcagaa cgaagaagtg aacgcatgaa tatgcttatt gatgcctacc aatgttagtc
      301 aaagtttgta aaacaaaaca ttgtctcctc taattagggg ttattttttt gatattcgat
      361 ttattttcca attggttatc gaaagggcgc cctgtacaaa aaatcaatac catcaaactt
      421 agcaagaaag atgcctctaa tgaattgaca aaatatggtg aggatatggc aaatgcaaag
      481 agatatgatg aagcattgac cttatttgat aaggccatag agattaatcc aaataatgat
      541 atggcttggg gagataaagc attaattctc gacaaaaaag ggcaaacagt agaagctttg
      601 acaaattttt caagagcaat ttcaataaat ccgaataact caattacgtg gcacaataag
      661 ggattaacat tgcttcgtat gagaaaattc aaagaatcga tcgagtgctt cgataccgct
      721 ttgaaaatta atgggaacta tgcaaaggcg tggtataaca aaggacgagc attcgagatg
      781 cttggagaga aaaataaagt acaaccctgc ttggacaaag ctaggaaatt ggatccactg
      841 ctttattcaa aattaactag ggcgaaattt taggtcatgt ttttgtcaat tgctacacta
      901 agtaaggaaa accttaatcg ctgtttcaga gtaaattcat agggaaccgc tcttatgtcg
      961 ctatcgcata caattgatac ataacttcta cacaaatatt atatagtaat attgcacagc
     1021 ttgaaaatgt ttgagttatc ttgggattct gcaagatata cgtatatgca aaatttctcc
     1081 ttctaaatat aatcttcgtg aagcaaataa tgtagaggag ttggctgagt caattaagca
     1141 ctatggcctt ttgcagccaa ttgtaatccg accggtatta cttggttatg aagtagtcgc
     1201 tggaaatcgc agatttgcag ctgcaaaatt gctaaaactg agaaaactaa gttgtcatgt
     1261 tattgagtta tctgataaag aagcatatga agtgggactt gtagaaaacc tgcaacacaa
     1321 aaccatgcat cctgttgaag aatctattgc attcaaaaag tatgttgaag gttatggatg
     1381 gggcggcgtt tctgaattgg ccaaacaaat tggcaagagt caggaatttg tgacgaaaag
     1441 aatacaattg cttctactcc caaaggagat tcaagaagaa attattcgcc agcgaataac
     1501 tccgagcgtg gcattagaac tattgccctt cgacgctgaa tcggttcgtg agattggtga
     1561 atttgttatt aagaacgctc tcaccaagat cgaggcaagg aatctagtca aaagatttac
     1621 gaaagaagat ctcattgacg ataagtttac ctcaaacccc aatgatgacg atgaattcaa
     1681 gcatacagat cactcaacac atgagcgaga actatatttg ctcgataagg ccctcatgaa
     1741 atcaatcacc attatgaaat ctactctagt cagctttgat gatatcataa acagtgttga
     1801 ttataactgg attttgaagg aattacttat gcaatacaga ctaattatac atggagacat
     1861 agacaccttt ctaaaattgc gtaagaggtt gaaaataaaa atgccaccaa actatctagg
     1921 ttctgataaa attgataaaa ctttaattga caagtcaact gacgatgaaa gtgaaaaggc
     1981 tgctaaatcc attcacctag gaactgcttt cttgtcttaa agtagtagat aatgttgctc
     2041 tgaaatgctt ggatgtggca tgagcggtac aatccaacat ttgtgataga tcgcatgtag
     2101 aagcaactga tcaatcacac aaagatgtca gttgccgagt cctagtaaac aattattcga
     2161 atatgctatg aagcattata acttacaatt aatgcgtcga ctcaaatatc cttaaatagc
     2221 gcgacattta ttgaatcgtg actttatggc agacatccca atatcgtatc ccataatagt
     2281 gatggcgttt gttgcggcaa ctgcggttat aggagtattg gctgtcaagt tcgttaagaa
     2341 aagtagtaaa cactacattg tggccggaaa gagtttatcg ttattctttg ttggaaccat
     2401 gttggtctct gaagctgttg atggaaatgc atcgctgggc aatgtagcat tgtcttatca
     2461 atttggattt tgggctgggg cagctattcc acttggcttg gccatatgtc ttgttttgac
     2521 agggttattc tttggaagga tatttaatag aatgaatatg ataacactcg ctgatttcta
     2581 ctttagaaga tatggaaaca ctgccgaaat aatgtcgggc actctgatgt ctatcagctt
     2641 tatcgttctc gtagcaggca acctagcagc gagtggttat attctgtccg tagtccttag
     2701 tataccgctg atttatgcca tgttaatttc aactgcagtt gtattaattt atacatactt
     2761 tggaggattg tattcgtgtg cttacacaga tatatttcat atttacttgg ccgtagttgg
     2821 gttttggcta ggatttctct atttcattgg gccatggtca ccaataccgg gtggattaga
     2881 gacaataatt gctaatgcac cggcaggttt catggatatg tcgggtctaa cagaccttaa
     2941 aagcggggct ctaattaatt gggctgctat catgtctttg gggttgggtg acatcgtagc
     3001 gctagatttc atggagaggg tgttttcagc ccgtggagga cgtactgctc agaagagctg
     3061 ctactatgcg gcgggcttga cgatgctcat tcttgttccg acaactatga ttgggattat
     3121 cggacatact ctcgagccga ataatagtga tccctttact ctctatccga tcgtggctat
     3181 aaaacatgta ccggaggtaa ttggaatatt gatgcttgtg agtacaataa gctgtgggat
     3241 gtctactgct aatggaggta cattggcaat tgcaagtgtg atgtctagga acatactgca
     3301 gcgtaacatt atcccgcgat taaaaagaag aaccatgacc gatagacaac tactacttgc
     3361 tacacggctc ttggtaatcc ccatgttctt tactgcgttt gcactgggag cgattatccc
     3421 tcggcctggg gtttacttgg tacttgcatt tgatattgtg cttgctggtt gttttgttcc
     3481 acttgtaatg ggcacgttct ggaaaaaatc tacttcagct gccgcagtag cttcaattgt
     3541 ggttggatcg acgctaagaa tgatacttta tttcacttta agtacagttt ctcctgatag
     3601 cccatatttt gcatatctag gcctagatac aatcattcca ccaatagtat cattcgtagt
     3661 atttgtcgta gtgagtttgg ctacatataa gaggagtcct tcaaggcacg atgtcatcta
     3721 tttgattccc tcagaagagg atgtggtatc cggcgcagat gtttccaaat gggtcaatcc
     3781 aattgatgta agaaagattc ctagtaggag atagatggtg aaggaaaatg ggtggataaa
     3841 catagctcaa caaccaaatg aggaatcaac aaactacgat aatcaaaaag ttcagaaaat
     3901 attaattgct attgataaat cgggatataa ggataagatc ataggatatt ccatcacctt
     3961 ggcaaaagca cttggagcaa gtataaccgc aatacatgtt ttggacaagt cttcttttgg
     4021 gatggttggc gatctactta gttactatag agggggaaat atcgaggagt acgaaaaagc
     4081 attgaaaaaa caagcagaag agtttctcaa tgaagtaaaa cttttggtag aaaaaggagg
     4141 agttaaaaca tgtgtagatg ttgttattag caagtcctcg gccgctgaag gaattattga
     4201 ttttgctaaa gaagctgatg cagatctcat aataattgga acaaaaggtt tgacgggagt
     4261 tgaaagattc cttatgggag gagttgccac ctcggtgata cgacatgctc actgcccagt
     4321 attggcagtg agatgatgat tgatggaatc atgcgatctc gcaatttgaa aaataaacag
     4381 aaaatgtata gaaattaaat ccaaaatata atattctatt atattccaaa aataccacgt
     4441 cagctccttc acacaaactt atgatttctc aacatatgta acttgaagga tggttcgttt
     4501 tcgaaagact catcgcaaac aatgcacaaa taggtagttt tcttatcatg tacagcttct
     4561 gcatgttcaa taagcccaaa tctgtctttg aatgtttctc cacatgctcc gcagccaaat
     4621 tttttcaata caaaccgtta ctgcttttcg tatttaagag ttgatgagac tttgtggtac
     4681 ctggatcttt tgcgaatgaa ttgtattaaa tgtaaacttc taaagcactc ttatcgtaat
     4741 aatataaaac tggcatacgt accaaattgt cgaaaatttt aatccgtgcg taatggcaca
     4801 gatattttat acgctctctg catctctgca aaatgaaaaa ttattactaa attaggcgat
     4861 tctgtcttta atctacttat attcaaagct cccaaacatc gtttaacagt tctcgcctaa
     4921 ccttcaagaa tatatagtct cttatattgc agttatcttt gctataacta aacttataag
     4981 ttaagttccc aaagttatac aatggaatgt cctcattgta gggccaaatt tgaaccgaat
     5041 atgcgatatt acccgatcgg attgaatagg cacggagaat atgggtacgt gttatggcaa
     5101 tcctgcaata attgtggcaa gtttattctt tgtctaaagg aaacaaagag tctttcagaa
     5161 cgtccctatg aaatagacgg ttctcatctg ctgctgcaga aagagacgga aaagcagcat
     5221 agagaatcgg caaaagaagg agaaattaac aaaaaaccaa agaagggacg actaaaaggg
     5281 aaaaactaga gattgaacca tcggataaac tttactcaca gcaatgcttc aggcatcgta
     5341 tactttaggc gtaattaagt ttttttgaat catggtaatt attagttgaa cttacagttt
     5401 gatcaatgag atataagtcc ataatggaga tgaggtatga atctcatcta atgcaatcag
     5461 tgatggaata tgaaattttt attttcaact cttaacaagg gaacgtttgt aaattgtaaa
     5521 cctcctctta gagttaatgc tggcctttag tttgtcatct ttcttcaact ataaggaatt
     5581 cggcatatat tcgatactat agtgtcaacg ttctcagtac tagctaccat tagcatataa
     5641 ctctccttct ttctgactac atg
//
LOCUS       DASSIK010000035         3752 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_7141, whole genome shotgun sequence.
ACCESSION   DASSIK010000035 DASSIK010000000
VERSION     DASSIK010000035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3752)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3752)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3752
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7141"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(74..1069)
                     /locus_tag="VFI64_00595"
     CDS             complement(74..1069)
                     /locus_tag="VFI64_00595"
                     /inference="COORDINATES: protein motif:HMM:NF024883.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HET7241814.1"
                     /translation="MVDEIDRILLVHLGKNSRASSYEITRYLQNLGYRITDRTVRHRL
                     AKLEKSNVILGYSLLLNPTLLSEKINRTILLKFKYTASTSVMTSRLEKYCKESSFCIY
                     SAKLTGDFDWVCHFVFDSVEQYEFESNNFLNRFVELIKDFHSYESSMVKASPYVLIDD
                     YDAREQKWRVYKILNSLQKYEKLNDKLQFIVESLVKHFDAKFARVWLLDKERKNLILK
                     FTAGKYKNINGEFSKVPADSNKIGNIVITGKPTITNDVINDKRIRYPEWAKRERLQSF
                     GGYPLTHSHNVIGVIAMFSTKRLQAADFEILGVFSDQVSKELEGVFDAIDFLIPK"
     gene            1249..1560
                     /locus_tag="VFI64_00600"
     CDS             1249..1560
                     /locus_tag="VFI64_00600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241815.1"
                     /translation="MKMDFFEIDRVVEDLAKNYAAPCTTTWFKVTNNKKPSDEEYRAK
                     VVEFMKQFENILLARFPEGEQATLCLEYVKKQLQAQISLIRRGNNKEVERRFQYYVNY
                     N"
     gene            1663..2262
                     /locus_tag="VFI64_00605"
     CDS             1663..2262
                     /locus_tag="VFI64_00605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241816.1"
                     /translation="MLDITRLAVPAIAILAIGGVISFLLAYSFYPEKHENVTVDGKCY
                     ELLGAAHEQYVNLAARRDIATLWLQLSKVEPRDAIIPIILSGKDSDIEHLRHSYQLNI
                     TSQQKVKYYPNIDASVVTANIAKNQLQNIAGNLTLKDVYPSAKTISGSIGIEPNNYIT
                     SAEGMDISIKSKEFMSNGIREIIANSDGVKSAYCRTGVY"
     gene            complement(2480..2803)
                     /locus_tag="VFI64_00610"
     CDS             complement(2480..2803)
                     /locus_tag="VFI64_00610"
                     /inference="COORDINATES: protein motif:HMM:NF016001.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase/quinone reductase family protein"
                     /protein_id="HET7241817.1"
                     /translation="MNQPQFLYLVTSGWNTGKEHRIEIWFVEHNKRYYVISERREQAH
                     WVQNISNNSRITFSVHDRTFEGTARIVEPKNEPELTNRIFELMDSKYKWHQGLIVELT
                     PLNSF"
     gene            3189..3704
                     /locus_tag="VFI64_00615"
     CDS             3189..3704
                     /locus_tag="VFI64_00615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241818.1"
                     /translation="MKGKPIRRITNFFTKFYIRYSTTISLNKNLLLSGIGGFIVSLVV
                     AYVSTKYSTDNFANSAFTVIAGFVFSKVIFAILFHLDNKKKYTKKFTGKLNFPLLKQI
                     VTKMVFADSIFDIINNVTRFFILLELLRIEYPPVQAAIIASLIASSFSYLAINLIIRR
                     LHVFGSKKKIF"
BASE COUNT         1218 a          699 c          653 g         1182 t
ORIGIN      
        1 aggaatactg catgtgtgct attttgtcaa gtaattagtt tgcagtattc gagaacagct
       61 agaagatgat attttacttt ggaatcaaga aatctattgc atcgaatact ccttcgagtt
      121 ctttggatac ctgatctgag aacactccta gaatttcaaa gtcagccgct tggagtctct
      181 tggtgctaaa catcgcaatg actcctatga cattgtgact atgagtcaga ggatatcctc
      241 caaatgattg caatctttct ctcttagccc attcaggata tcttattctc ttgtcattaa
      301 taacatcatt tgtaattgtt ggttttccgg taattactat attccctatc ttatttgaat
      361 cggcgggaac ctttgaaaac tctccattaa tattcttgta cttgccggct gtaaatttca
      421 aaataaggtt tttcctttcc ttatctaaca gccataccct tgcaaactta gcatcgaaat
      481 gtttcaccaa actttcgact ataaactgga gcttgtcgtt tagcttttca tatttctgta
      541 aagaattaag aatcttgtaa acccgccatt tttgttctct tgcatcatag tcatcaatta
      601 gtacataagg tgaggctttt accatacttg attcataaga atggaaatct tttatcaatt
      661 caacaaatct attcaagaaa ttgttacttt caaattcata ttgctcaacg gaatcgaaaa
      721 caaaatgaca tacccaatca aaatctcctg tcagtttagc ggagtaaatg caaaaagatg
      781 attccttaca atatttttca aggcgagagg tcatgacaga tgtgctagct gtatatttga
      841 atttaagaag aattgtacga tttatttttt cagatagtaa agttggattt agaaggagag
      901 agtatccaag tataacgttg gatttctcta atttcgccaa tctatggcgt acagttctat
      961 cggtaattct gtaccctaaa ttttggagat acctcgttat ctcatatgag gacgcacgtg
     1021 aattcttccc tagatggact agcaggattc tatcaatttc gtctaccact aaaaaaatat
     1081 ggaggacatt gttattatta tgtattgtca aatattgcca attaggtaat tcaacaacga
     1141 aaaaatatat actgttgata tcagtttgtc gtaggatttc ctaatcggca acgaagggtc
     1201 tcacttgttt ccggagagaa tataatctaa tttcatgcat accaagatat gaaaatggac
     1261 ttttttgaaa tagatagagt ggttgaggat cttgcaaaaa actatgcggc tccatgcact
     1321 acaacatggt tcaaggtaac aaacaataag aaaccatccg acgaggaata ccgtgcaaag
     1381 gtagtagaat tcatgaaaca attcgaaaat attctcttgg ctcgattccc agaaggtgaa
     1441 caagccaccc tctgtttaga atatgtcaaa aagcaattac aagcccaaat ttcactaatt
     1501 cgaagaggaa ataacaaaga agtagaaagg cgattccagt actatgtcaa ttataattaa
     1561 tgattatact tgggataaat gctcagtgtt gactacgttg aattgtcaat cgttccatct
     1621 tgccctaaaa ttagatacag taactaatag ctcccatgac ccatgttaga cataaccaga
     1681 cttgcggtac cagccatagc aatacttgct atcggtggag taatcagctt tcttcttgct
     1741 tatagtttct atcctgaaaa gcatgagaat gttactgtcg atggcaagtg ttacgagtta
     1801 ctcggtgcag cccatgagca gtatgtgaat cttgctgcaa gaagggacat tgcgacctta
     1861 tggctacaat tgagcaaggt cgaaccaaga gatgcaataa tacccatcat ccttagtggc
     1921 aaggactccg atatcgagca tcttagacat agctaccaac taaacataac atcacaacaa
     1981 aaagtgaaat actatcccaa tattgatgca agtgtagtaa cggcgaatat tgccaaaaat
     2041 caacttcaaa atatagcagg aaatctgaca cttaaggatg tctatccatc ggctaagact
     2101 atatctggaa gtattggaat cgaaccaaat aattacataa cgtcagcaga aggaatggat
     2161 atttcaatta aatcaaagga attcatgagc aacggaatta gggaaataat cgccaattca
     2221 gatggcgtaa aatcagctta ttgccgtact ggagtgtact aattagacgt aaaagtcgtg
     2281 gacgattaca acccgtggtt tagcccatcc ctcaaatttt cggtacagat agaataacac
     2341 ggaagtcgca ccaaaagcgt gttggattca gcatcaaact atttcttatt ctcgcctatt
     2401 ggaccgtgtg gtaggcttga ctgtatagat cagtgcacat catcccatta tattaggata
     2461 aaatctaagg tcaacaaagt caaaaggaat tcaagggagt aagttctaca attaaaccct
     2521 gatgccattt gtactttgaa tccataagct cgaaaatcct attggttaac tcaggttcgt
     2581 tcttcggctc gactattcgt gcagtacctt caaatgttct atcgtgcacg ctgaatgtaa
     2641 ttcttgaatt attgctgata ttctggaccc aatgtgcttg ctctcgacgc tcagagatta
     2701 cataatacct cttgttgtgt tctacaaacc aaatctctat tctgtgctcc ttacctgtat
     2761 tccaccctga ggtaaccaaa tatagaaatt gtggttgatt caatcctgtc aattaggttt
     2821 tgaagaggac aattcatact ttaccttata gttatgccct ccatgaagct ataatacttc
     2881 agcgaagacc cgatattctg tttctaggtc catattatgg ttccatcata aactaaacct
     2941 ctaatcatat tagacaatct tattcatcag gtgaccaatc tcgagagtca tatcaaattt
     3001 tattcgcaag cagatgatgc acgggcaggt cgataagata tgtttcacaa cattatattc
     3061 ataccacacc ggcaggatat ggcagatgat tgttctatga atcctccgtg agggatatca
     3121 gtaaagtaca gttgatccca agttagataa ttatcttata taatgactga taccatatta
     3181 attgaaaagt gaaaggaaaa cctattagaa gaataacaaa tttctttaca aaattttaca
     3241 taaggtatag cactactata tctctcaaca agaacctact actttcaggt attggcggtt
     3301 ttattgttag tcttgtggtt gcatatgtgt ctacgaaata ttccactgac aattttgcaa
     3361 attctgcttt cacagtaata gccggattcg tattctctaa agtaattttt gctattctct
     3421 ttcatcttga taataaaaag aaatatacaa aaaaatttac tggcaaatta aactttcctc
     3481 ttttaaagca aatagtaaca aagatggtat ttgcagattc catatttgat attatcaata
     3541 atgtaacaag attcttcatt ctactggaat tattgagaat agaatatcct cctgtacaag
     3601 ctgcaataat cgcatcactg atagcgtcct ctttttcgta tttagcaata aatttgatta
     3661 taagacgttt acatgtattt ggatcaaaga aaaaaatatt ctgaggtcta attattggtt
     3721 tgtagcattg acttcacaag tgcgctagac ta
//
LOCUS       DASSIK010000036         2007 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_105962, whole genome shotgun sequence.
ACCESSION   DASSIK010000036 DASSIK010000000
VERSION     DASSIK010000036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2007
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105962"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1947)
                     /locus_tag="VFI64_00620"
     CDS             complement(<1..1947)
                     /locus_tag="VFI64_00620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241819.1"
                     /translation="MNKPEQKEYTQIIQELERINEIIQKFLLKATKIISCCTEGSDPS
                     VAVGVEGYKKGLITAIDRGVKIRFLTEINDTNLNYFKKLAKIAEIRHLEGIRSNFSVS
                     EDEYIGSVVLQDSSPVPQLIHSNAKAVVEQQQYVFDILWGMSAPALQRIQQIERGLPN
                     EKTEVLYGEEQVIKAIVEWQYKSEKKWDLCLESNVPHFSMSERIRKGYLDARDRGLRI
                     RYLTEITKDNLEYCKEIMNFGQVRHLERLLGNFVVSEKEYMGEATGKQFLSHLIYTNN
                     KEMVEQQNYIFENLWNNGINAEKQIKMIEQGTPPVETRIIENPDKIADMIKTEILNSN
                     EIIACYQPGRLELIHDNFFDLYKEILDRKSKGEHKGIKLIVTLDKDILELVKHFVKAG
                     VQVRHVRNLLPLSFVVTDREVQANLEDIKGRKIIHSLLTSNEPVYVKQFASVFEQLWK
                     EGIDAKLKIKDLEEGSENEIEVIQNPSRALELYFHILDTAKDDILLIFPTIGAIARQE
                     KLGILNRVRAAAEDRHVSVRIMAPFDFSPIAALADLIKDEIKEIGIRFIETVSGRATV
                     LIVDKRISLVMELKDDSKENFSDAVGLSTYSNSKAGVLSYIAMFENLWSQTDLLDKLK
                     VHDRMQKEFINVAAHELRTPIQPIL"
BASE COUNT          521 a          445 c          316 g          725 t
ORIGIN      
        1 aagtatgggc tggattggtg tccgcaattc atgggcagcg acattgataa attctttctg
       61 catcctgtca tgaactttca acttatccaa taggtcagtc tgcgaccaga gattctcaaa
      121 catggcaata taagacagta cgccagcctt gctgttcgaa tatgtggata acccgactgc
      181 atcagagaaa ttttctttag aatcgtcttt aagttccatc actagtgaaa ttcttttatc
      241 aactatcaga accgtggctc tgccagagac ggtttcaata aaccttatac cgatttcttt
      301 gatttcatct tttatcaaat ccgccaaggc tgcaataggc gagaaatcaa atggagccat
      361 tattctaaca ctgacatgcc gatcttctgc tgcagccctt actcgattga gtattcccaa
      421 tttttcctgt cgggctattg cacctatagt tggaaaaatt aacaggatat catctttcgc
      481 tgtatctaag atatggaagt ataattcgag tgcccttgag gggttttgta tcacctcaat
      541 ttcattttcg ctaccttctt ccaaatcctt tattttcagc ttcgcatcaa taccttcctt
      601 ccataattgc tcgaaaacag aagcaaattg cttgacatac acaggttcat tacttgttaa
      661 taggctatgg attatttttc tccctttaat atcttccaaa ttagcttgta cctctctatc
      721 agtaacaaca aaacttaatg gcagaagatt tctcacatgt cttacttgaa cacccgcttt
      781 tacaaagtgc ttgacaagct ctaaaatatc cttgtcaaga gtaacgatca atttgatacc
      841 cttgtgttcc cccttgcttt ttcggtccaa tatttctttg tacagatcaa aaaagttgtc
      901 atgtattaat tctaaacgac ctggttgata acatgctatt atctcatttg agttcaaaat
      961 ttcggttttt atcatatctg ctatcttatc gggattttct attatcctag tttcaacagg
     1021 aggcgtacct tgttcgatca tcttgatctg cttttccgca tttattccat tattccataa
     1081 attttcaaaa atgtaattct gttgctctac catctcctta ttgttagtgt aaattaaatg
     1141 agataaaaat tgtttaccgg tagcctcgcc catatactcc ttttcactta ccacaaaatt
     1201 gcctaacagt ctttcaagat gtcgcacttg gccgaagttc atgatttctt tacaatattc
     1261 caaattgtct tttgtaattt cggtaagata tcttatccta aggcctctgt ctctagcatc
     1321 aagatatcct tttcttattc gttccgacat ggaaaaatga gggacattag actctaggca
     1381 taaatcccat ttcttttcac tcttgtattg ccactctaca attgctttta tcacttgttc
     1441 ctctccataa agaacttctg ttttttcatt tggaagcccc ctttctatct gttgaattct
     1501 ttggagagca ggggcagaca ttccccataa tatgtcaaag acatattgct gctgttctac
     1561 taccgcctta gcgttgctgt ggattagctg gggaacggga gaagaatctt gcagtactac
     1621 tgatccaatg tattcgtcct cactaacgct gaaattactt cttatccctt ctaggtgcct
     1681 gatctcggct atcttcgcca gctttttaaa gtaattcaaa ttggtatcat taatttcagt
     1741 gaggaatctt atttttacgc ctctatctat cgccgttatg agtcccttct tataaccttc
     1801 tacgcctact gcaactgaag ggtcactacc ttctgtacag caagaaataa tcttcgttgc
     1861 cttcaacaga aacttttgta ttatttcatt tattctttcg agctcctgaa tgatctgagt
     1921 atattctttt tgttccggtt tattcatatg ttctaatgac cttgagtttt gcccaccatg
     1981 ttttctttat cacggttgtt cattttc
//
LOCUS       DASSIK010000037         3603 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_995385, whole genome shotgun sequence.
ACCESSION   DASSIK010000037 DASSIK010000000
VERSION     DASSIK010000037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3603)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3603)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3603
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_995385"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1507
                     /locus_tag="VFI64_00625"
     CDS             <1..1507
                     /locus_tag="VFI64_00625"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HET7241820.1"
                     /translation="SHQKISRTAWMTLGILGSTLLITMYGETMLLPAIPDIIKEFDIP
                     YDTSSWILSSYLISGAVATPIAGKLSDIYGRKKMVITIMIIYIFGISLGGFSPDITFL
                     VIARVIQGIGISMFPIAFGIIRDQLPEQKLAIGVGIFSSMFAAGSVVGLAIGANIIEN
                     FGWRTTFFSIIFVAIGLWFIIKRYISDNHDHNIMMPLPKTDIVIESSLNKLEKRYRRS
                     DIRAIDIKGTITLAVTITSFLLVLSYSESANVTGSPLVPVFLSVGAISLVLFVFIERR
                     SESPLVNLQLMTNKMILSANIILVIAFLSMFTVFQTIPVLVRSPQPLGFGGSAITSAD
                     IQLPFMIVFLLFAPSSGFIVSKLGNVKPTLIGSIVSSIGFFSLFVFHSTEFLVATNLA
                     IIAAGLSLMQVGGFDIVLQSTPRQFSGISLGMTVLFNLIGGSIGPAVAGIYMQSHQVI
                     KKDIIGSFPSPESYSLIFLTIALTSLVPIVLAFFLRKKLTPLPDGLSVRKP"
     gene            1903..2178
                     /locus_tag="VFI64_00630"
     CDS             1903..2178
                     /locus_tag="VFI64_00630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241821.1"
                     /translation="MAENLRLCPQCSDGHMRPISKVAEEDGIVEFYECDNEYCRYKSA
                     NTGMDQGVSVGEQTNEPIMCSKCNIMFNTELEYKQHYDEKHKASTSN"
     gene            2292..2474
                     /locus_tag="VFI64_00635"
     CDS             2292..2474
                     /locus_tag="VFI64_00635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241822.1"
                     /translation="MSTEGKINPALVFPTLSTAAENAIRKMAQYDDSLTKFNISNCSE
                     KFRGGLDFGAKICRWL"
     gene            2554..2751
                     /locus_tag="VFI64_00640"
     CDS             2554..2751
                     /locus_tag="VFI64_00640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241823.1"
                     /translation="MSTEKGRAKLKDLIEQYETNIDNAISLRSEIIKAVDNEKDEDFN
                     LQVMGRFNAASDKFKNAIDGE"
     gene            2805..3248
                     /locus_tag="VFI64_00645"
     CDS             2805..3248
                     /locus_tag="VFI64_00645"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HET7241824.1"
                     /translation="MNQEKTRFSNIIVTVDGSESSLSAADFAISLASRDSSQLTILTV
                     IHTAVGLGHSGKPEEWHKSERIKAQELFDKIKKDAQNKNIICKTNIIETHMSVDGAIV
                     NYAEEQKGDLIVIGSSGMAGLKKMLLGSVVTGVVRYATCPVLVVK"
BASE COUNT         1157 a          629 c          718 g         1099 t
ORIGIN      
        1 ttctcatcaa aagatatcca ggacagcttg gatgacactt ggaattttgg gttccactct
       61 actaattaca atgtacggcg aaaccatgtt gcttcccgcg attcctgaca tcattaaaga
      121 atttgatatc ccgtatgata cctcctcgtg gattctttca tcatatctta tctcaggtgc
      181 tgttgcaaca cccattgccg gaaagttatc cgatatctat ggcaggaaaa agatggtaat
      241 aacgataatg ataatctata tctttggtat tagcctggga ggattttcac ctgatattac
      301 atttctggta atcgcaagag taattcaagg aattggtatc tcgatgttcc ccatagcatt
      361 tggcataata agggatcaac ttccagaaca gaagcttgcc ataggtgtag ggatatttag
      421 ctcgatgttt gcagctggtt ctgttgtagg tttagctata ggtgcaaata taattgagaa
      481 ttttggatgg cgtactacat ttttttcaat tatatttgtt gcgattggct tgtggtttat
      541 aattaaacga tacatttctg acaaccacga tcacaacatc atgatgccat taccaaaaac
      601 ggatatcgtt attgaatcgt cccttaataa attagaaaaa cgttacagaa ggagtgatat
      661 tagagctata gatataaaag gtacaataac tcttgctgtt acgataactt catttctgct
      721 ggtgctctca tattcagagt cggcaaacgt tacgggatct cctctagtcc cagtattttt
      781 atctgttgga gctatttcat tggtactttt tgtgttcata gagaggagat cagaatcccc
      841 tctagtaaat ttacaattaa tgacaaataa gatgattctt tctgcaaaca tcattctagt
      901 gattgctttt ctcagtatgt ttacagtctt tcaaactata cctgttttag taaggagtcc
      961 acaaccctta ggatttgggg gaagcgctat aacaagtgcg gatatccaac ttccattcat
     1021 gattgtattt ttgttatttg cgccatcttc tggttttata gtatctaagc taggcaatgt
     1081 aaaaccaacc cttattggaa gcatagtcag cagtattgga ttttttagtc tgtttgtgtt
     1141 tcactcaaca gaatttttag tagcaacaaa tcttgctata atcgctgctg gattatcgct
     1201 aatgcaggtt ggaggctttg atattgtcct acaatctaca ccgagacagt ttagtggaat
     1261 atctcttgga atgactgttc tttttaattt gattggaggc tcgataggac ctgctgttgc
     1321 aggtatttat atgcaatcac atcaagtcat taagaaagac ataattggtt catttccttc
     1381 ccctgaatcc tacagcctca tatttcttac tatagctttg acttctttgg tacccatagt
     1441 acttgctttt ttcttacgga aaaagctgac gccactacct gatggtctgt ctgttagaaa
     1501 gccatagaat gaatccgttt cgtaggatgg ttctgatggt acgcgcaacc acgcaactca
     1561 atacagcaaa ggcagaacca gttaactaca gaacacacca cagagtcaac atgcctcaat
     1621 tccgtctttg acgctttaag aaaattaatt taaaatgata aattgtacag gatcgcgatt
     1681 aaaactttca gacatttcat cgcagatttt ccatttcatt gaaattattt aattcgtcta
     1741 ttcatgaagg tgtatgattg gagtgtaata gatatttcaa tagctaatgt ccctaacagg
     1801 tctaaatcga tagtatgtcc tatcaagttc ctcaaatgtg ttatgcggtc caaaagtaga
     1861 gttcattagt gcgcaattag atagatcaaa gtaaggaagt aaatggctga gaatttgaga
     1921 ctctgtcctc aatgctctga tggtcatatg agacccatca gtaaggtcgc tgaagaagat
     1981 ggcatcgttg aattctatga atgcgataac gagtattgta gatacaagag tgcaaataca
     2041 ggaatggacc aaggagtaag cgtgggagaa caaacaaatg aacccataat gtgcagtaag
     2101 tgtaatatca tgttcaatac agagttagag tacaaacagc attatgatga aaagcataag
     2161 gcatctactt caaattgaaa aagttctcca tgtttgctta gaagttccgt tctgtagtca
     2221 ccaatgactg aagaggtatc gaaccattcg tttgtcatta tattgcgaaa aggcatcata
     2281 tctggaactt tttgtctacc gagggaaaaa ttaatccagc cctcgtcttt cctactttgt
     2341 cgactgcggc ggaaaacgca attagaaaga tggcccaata tgatgactcg ctgaccaaat
     2401 ttaacataag taactgttcc gagaaattca gaggtggtct tgactttgga gccaagatat
     2461 gtagatggct atgaatgact aaaaacgaaa ggactaaatt cttaacaatg cttgaactcg
     2521 atttatatat acagatcaac tttattgact gagttgtcaa cagagaaagg acgagccaaa
     2581 ctaaaggatt tgatagaaca atacgagaca aatattgaca atgcaatcag tttacgctct
     2641 gaaatcataa aagcagtaga caatgaaaaa gatgaagatt ttaacttgca agtaatgggt
     2701 aggttcaatg cggcttctga taaatttaag aatgctatcg atggggaata ggagttggtc
     2761 gatataacat ttttaagttt aaaaatataa agtcgaaata taagttgaat caagaaaaga
     2821 cgagattttc taatataata gtgactgtag atggctctga atcatctcta agtgctgctg
     2881 attttgcaat atctttggct agtcgcgata gttcccagtt gaccatatta acagtaatac
     2941 ataccgcggt tggtttgggt cactcaggaa agcctgaaga atggcataaa agcgaaagaa
     3001 tcaaagcaca agagctattt gacaaaataa aaaaagatgc tcaaaataag aatattattt
     3061 gtaaaacaaa tatcattgaa actcatatgt ctgttgacgg tgccatagta aactatgctg
     3121 aagaacaaaa aggagatttg atagtcattg gttcgagcgg aatggctggc ctcaagaaaa
     3181 tgctactagg aagtgtagtt acaggagttg tacgctatgc gacatgtcct gtacttgtag
     3241 taaaatgatc tgtatgagta acaaaatgtt caattaccat agctcataag ctgtccgcat
     3301 ccatcctcac aaaactcttt cgatggttgg accctaaatc gggattttga cttggtacta
     3361 ggagatagta actaagaata caagggaggt tgtaactaag agatagatta aaacgaccgt
     3421 ataacagtcc ctacacagga acagaatcat gaggcggttc aaaaacctcg ggtaatcagt
     3481 gagaagagca acggcgcatt ctattgtgta tattgtaata ccttcttgct ggtaaagtat
     3541 caaatactaa ctgggaagca aaccatttca taaaatattc gctattggaa tctaatttct
     3601 ctc
//
LOCUS       DASSIK010000038         3322 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_204478, whole genome shotgun sequence.
ACCESSION   DASSIK010000038 DASSIK010000000
VERSION     DASSIK010000038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3322)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3322)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3322
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_204478"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..220
                     /locus_tag="VFI64_00650"
     CDS             <1..220
                     /locus_tag="VFI64_00650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241825.1"
                     /translation="HDTFGGKTELVPTTGSWKDEKGRLNEEPSAGFEVIADKTNETIK
                     FLKNYKKKLKTRFKQDDIMITYYPVNVI"
     gene            complement(979..1311)
                     /locus_tag="VFI64_00655"
     CDS             complement(979..1311)
                     /locus_tag="VFI64_00655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241826.1"
                     /translation="MKKAKCGHIVEKRYADAHDGLCRRCHSNFSFLIDLESKYGEDAV
                     VQYWYAMILTHLSSGEDKQSTDCLIEHLIAFYQRELIMVPSKDRYIKRMLYMLTSLLH
                     PFDMKSLE"
     gene            complement(1554..2312)
                     /locus_tag="VFI64_00660"
     CDS             complement(1554..2312)
                     /locus_tag="VFI64_00660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241827.1"
                     /translation="MVASVVIANSVIVFSDSMYRYPIILWILNITGSVASGLGLVAVY
                     RHGLHGPHGKSYLFLTIGLISWLSADLTLTYYYYALGIEEGKLISFADLFWISGYVFL
                     TLHLVITLKSLKNKINLGIIIVASCATLLLIAYDIINLTPSFFLTDEDLAAFVLTITY
                     PILDLSLIIPSATILVNLRKDYQQAIPWFLSSLSLLVNAIADDGYVHDFVNHNSHNLW
                     FWDLFYVTDFIIMAGALFWYNRFHISNQLMKARN"
     gene            2644..3213
                     /locus_tag="VFI64_00665"
     CDS             2644..3213
                     /locus_tag="VFI64_00665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241828.1"
                     /translation="MFVCKINILIIVGAILVLGGFVCTNTSSSASAQTTMEITSDNAS
                     SNDTYISQKTEMSVPASPMVTPPGKLPHQTVFALPLRDDGKIWTGVVTFTASKPIEIE
                     VLHNYDPNILPDAQHGEPYHATLPTNQTIALSTMTIFTDTPVRVTDTPISTGSLAFTG
                     SALVFHKTSGEPFTVTYTVDAVAKKPNHQ"
BASE COUNT         1118 a          597 c          605 g         1002 t
ORIGIN      
        1 acatgacacc ttcggtggaa aaactgaact agtacctacc acgggaagtt ggaaggatga
       61 aaagggtcgg ttgaacgagg aaccgtctgc aggctttgag gtgatagctg acaaaacgaa
      121 tgaaacgatt aaattcttaa agaattataa aaaaaaattg aaaaccaggt ttaaacaaga
      181 cgatataatg ataacctatt acccagtcaa tgtaatttga cgattcaata ataatcatcg
      241 actagaatgt agctagatta atagaccttg ttaccgatca gatactcgaa tagttaattg
      301 ttataaaact aacaattcaa tacacttcaa ataggaattg ataatgcacg cagttgcaag
      361 aactaatatt ttagctaagt cattagtata actcgttact tctacaatta acaatgttca
      421 aggcattgaa aggaatttgg aatatatttg ttcatacagg aaagccgacg gtaacagatt
      481 tgttgacatg gtatcttttt ttattgccta acagaagata atttctaaat tgcttatagc
      541 tccctgtctc atacttcaat gaattaacta atgcattgtg aacgtactca gaatctggcg
      601 gatatgttat agaaggtttt caaatcttag aataaaagca cctgtaacag aaattaaagt
      661 agaattgtca ttttgattgg aactccaact gccgatttca tcctgatggg ttttggtgag
      721 gttctgtgat tggttcacaa ttacgttcat acatgtacga aagtcttgca tgtcaatttt
      781 gaaccagaac aaattatcca tttttggatt cattgaaagc ttggccagtg gaattaggaa
      841 aataattaag tatggaaatc ctgtaatcga aattattgtt atgataaaaa ctgcaactaa
      901 gtcggtttga aaccttttga tttgacattt gttaactata ctcgttgtat attagggatt
      961 agatttaagt tctaattatc attctaaaga tttcatatca aatggatgca gtaatgaagt
     1021 cagcatgtat agcatccttt taatgtacct gtccttcgat ggaaccatga ttaattctct
     1081 ttgataaaag gcaatcaagt gctcaatcag gcaatcagta ctctgtttgt cttcccctga
     1141 tgatagatga gtaaggatca ttgcatacca gtattgaact actgcatctt ctccgtactt
     1201 ggattctaga tctattaaaa atgaaaaatt agaatgacat cttctgcata ggccgtcatg
     1261 agcatctgca tatctttttt caactatatg accacacttt gccttcttca ttttgataaa
     1321 taatatcgtg aagaaggcat atgaatgcta ttgtcgccta attactgtga tatcattaac
     1381 cctatattcc atcagactac agaggaccga tcaccaaaat cttcgtacaa ggtaaaaatt
     1441 cagagtaatg ttattcgcat gccgtacgca taaaggatcc ataagcttca agagtcccaa
     1501 gatataacct taatttaaaa actagcttgt tttaagataa gtcatcatgt aaattaattt
     1561 ctcgctttca tcaactgatt tgaaatgtga aatctgttgt accaaaaaag agcacctgcc
     1621 ataataataa aatctgtaac atagaaaaga tcccagaacc aaagattatg ggaattgtgg
     1681 tttacaaagt cgtgtacgta gccgtcatct gcgatagcgt taactaataa ggataatgaa
     1741 gagagaaacc atggaatcgc ctgctgataa tctttcctta agtttacaag gattgttgca
     1801 gatggaatta ttaatgacaa atccaaaata ggataagtaa tagttaggac aaaggctgcc
     1861 aggtcctcat ctgtaagaaa aaatgaagga gttaaattaa ttatgtcata agcaattagt
     1921 aacaaagtag cgcaggatgc tacaattatg attccaaggt tgattttatt cttcaaggat
     1981 ttgagtgtta taaccagatg taaggtgaga aagacatatc cgcttatcca gaacaagtct
     2041 gcaaaagaaa ttaactttcc ctcttctatc cctaaagcat aataatagta tgtgagggtt
     2101 aagtcggctg acaaccaact aatgaggcca atagtaagaa ataggtagga ttttccgtga
     2161 ggtccatgaa gtccatgccg gtatacagca accaaaccca gacccgaagc aacggatcca
     2221 gttatattta aaatccatag aatgatagga tatctataca ttgaatccga aaaaacaatt
     2281 acggaattag caatcactac tgaggcaacc ataaacaaag tcgtatacct cagtgttgtt
     2341 ttgtggtcta tctgcttgcc gattgacaga tgatgttgga ctaacttggt tgcataaaga
     2401 tttttctgat aataaagcca gctatatcaa ttgaaaaaat gggcactcca aaattatcca
     2461 aattcattgg aggtagatct gtattaccct tttgactttt ctctgaggca gctttcaata
     2521 cgaaggcttt gggcattggg caaagttgct actttttgcc tccatattac cctgagatct
     2581 taactagata acaaatggaa tcagacatga atagtttatt tactccaggg attatctaca
     2641 ggcatgtttg tttgtaaaat aaatattctg ataatagtgg gcgcgatact agttcttggt
     2701 ggttttgttt gcaccaatac ttcgtcttcc gcatctgcgc agaccaccat ggaaattaca
     2761 tctgataacg catcgagtaa cgatacttat atttcacaga aaacagagat gtctgttcca
     2821 gcatctccaa tggttacccc accaggtaaa ctcccacacc agacggtatt tgctctcccc
     2881 cttagagatg atggcaaaat atggacaggc gttgttacct ttacggcaag taaacctatt
     2941 gaaatagagg tgcttcataa ttatgatccc aatattctac cagatgcaca acatggcgaa
     3001 ccctatcatg caacccttcc tactaatcag acgatcgcac tttctacaat gaccattttt
     3061 acggacacac cggtgagggt taccgatacg cctattagca ctggttcttt ggcgttcact
     3121 ggaagcgcat tggtgtttca taaaacaagt ggggaacctt ttacagtcac atataccgtc
     3181 gatgcagttg ccaaaaagcc taatcatcaa taatggttat tgtgattgat tgatctttta
     3241 ataattcact ctcatatcct agaagaattt aatgaggcgc agttaatagg aacaaactcg
     3301 acaatataaa ataccatgaa aa
//
LOCUS       DASSIK010000039         2945 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_401170, whole genome shotgun sequence.
ACCESSION   DASSIK010000039 DASSIK010000000
VERSION     DASSIK010000039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2945)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2945)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2945
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_401170"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            157..1326
                     /gene="ilvA"
                     /locus_tag="VFI64_00670"
     CDS             157..1326
                     /gene="ilvA"
                     /locus_tag="VFI64_00670"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004794 - L-threonine ammonia-lyase
                     activity [Evidence IEA];
                     GO_process: GO:0006549 - isoleucine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HET7241829.1"
                     /translation="MDDEVRKTPLTESQTFSKMIGSHIFLKMESMQKTGSFKVRGACS
                     KVNSLTAEEWKRGVITASAGNHAQGVAFSAMKKKIPCKIIMPKSASPAKVAATRSYGA
                     EVILSGNTYEDTWKVADSISHESGYVMIHAFDDPLVICGQGTIGLELLEDLQRFDKVY
                     VPIGGGGLASGLAIAVKAKRPEVKIIGVESNQFPAMKDSISSGHLVTTKSGFSIADGI
                     SVKSPGELTFKICSDYLDDIVTIDDNSIVEAMFLLMEREKVVVEPAGAATLAYLLSKN
                     DLKSSERVVSILSGGNVDMYLLGQIVAKGLMQMGRMLKIFIQLPDKPGALKTVVDRIA
                     ELNVNIVEVNHDRLSSNVAAGSAGVYLSLELEDEKHAEKLMDFLQKQGIEFRVTS"
     gene            complement(1359..2756)
                     /locus_tag="VFI64_00675"
     CDS             complement(1359..2756)
                     /locus_tag="VFI64_00675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004421 - hydroxymethylglutaryl-CoA
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006084 - acetyl-CoA metabolic process
                     [Evidence IEA];
                     GO_process: GO:0010142 - farnesyl diphosphate biosynthetic
                     process, mevalonate pathway [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA synthase"
                     /protein_id="HET7241830.1"
                     /translation="MPVGIDDLAIYIPKLYLDYRDFAEARGIDPQKLEYGIGIRKMTI
                     VDTNQDSACMAANACLKLMQRNHLEPDDIGRLYVATESGLDESKAMNSFVVGMLEQIY
                     GEDSFEHAGGIECKFACVSGSYALYDNANWIRAEENNNKAAIVVVSDIAKYDVGSSGE
                     YTQGAGAVAMLIKEVPRLLSFDPKVTSTTIKNEYDFYRPFGKETPLVNGTYSNLLYLI
                     QVRKAFDSYKEKAIRTGLIRINDGESITDHIDLFTVHLPYRKMGEKALAYLLRHEWRT
                     LPRWDSVIKEIGFAEPVPKDPRGTIESILADTEFMKADERFRKSFMQTSFYNEVYEKK
                     MSSSLEASSIIGNLYTASMYMGFRSLLEYEDKKNHNIEGKRIGFGSYGSGSSAMVFSG
                     VIQPAYKEIVKGMNLEEEIGSRTKLSMDQYQGLRENERNLNDSYVRAKDEFVLVRIGG
                     STADKAGVREYCYCN"
BASE COUNT          874 a          637 c          578 g          856 t
ORIGIN      
        1 ctgcttctca gaatacatct cctgaatcag aatttaagga aaggtcataa tagtgttcat
       61 catagggtcg atcattggta atttaataac aggaacagaa tatatcagga gtctaagata
      121 ccttcattaa aaaatatctt agatgctcgc agtttaatgg acgatgaggt aagaaaaaca
      181 ccgttaacag agtcacaaac cttttcaaag atgataggct cacatatctt tctgaaaatg
      241 gagtcgatgc aaaagaccgg ttcttttaag gtcaggggcg cctgctcaaa ggtaaacagc
      301 ttgactgccg aagagtggaa aagaggggtt ataacagctt cagccggcaa tcacgcacag
      361 ggagttgcct tttctgcaat gaaaaaaaag attccatgta agattattat gccaaaaagt
      421 gcctcccctg cgaaggtagc agctactagg tcatacgggg cagaagtaat cctctccggt
      481 aacacgtacg aggatacctg gaaggtcgcc gattcaattt cccacgagag tggctatgtt
      541 atgattcatg catttgacga tcctctcgtc atatgtggcc agggaaccat aggattggaa
      601 ctcttggaag acttgcaacg tttcgacaag gtatacgttc cgataggagg gggtggtctt
      661 gcgtcaggac tagcaattgc agtaaaggcc aaaagacctg aagtgaaaat aataggtgta
      721 gaatctaatc aatttcctgc tatgaaagat tccatatcat ctggacacct ggtgacaaca
      781 aaaagtggct tttccattgc ggatggaatt tctgttaaat cgcccggtga actcacattt
      841 aaaatttgtt cggattatct tgatgatata gttaccattg atgataattc gatagtagaa
      901 gctatgttct tgttgatgga aagggaaaaa gttgtagtcg aaccagctgg agcggctacc
      961 cttgcttatc tattgtcaaa gaatgatctg aaaagtagcg aaagggttgt gtctatcctc
     1021 tctggaggaa atgtcgatat gtatctgctg ggccaaatag tagcaaaggg attgatgcag
     1081 atgggccgta tgcttaaaat ctttattcaa ttgcctgata aacccggagc attgaagaca
     1141 gttgtcgata ggatagccga actgaatgtc aatattgtgg aagtcaatca tgatcggcta
     1201 agttcaaacg ttgcagcagg ctcagcaggg gtttatctca gtcttgaact tgaggatgaa
     1261 aaacatgcag aaaaactcat ggattttcta cagaaacaag gaatagaatt tagggtaacg
     1321 agctaaatta acccaacaaa aattaaagta acgttagact agttgcagta acagtattcc
     1381 ctaaccccag ccttatctgc agtagaccca ccaatcctga ccaatacgaa ttcgtccttt
     1441 gccctaacgt atgaatcatt aagatttctc tcattctccc taaggccctg gtattgatcc
     1501 atagataatt ttgtgcgcga tccaatctcc tcttccaggt tcattccctt tacgatttct
     1561 ttatacgctg gttgaatgac accactaaat accatggcgc tacttccgct accgtatgac
     1621 ccaaaaccaa ttctctttcc ctcaatattg tgattcttct tatcctcata ttctagaagg
     1681 cttctgaatc ccatatacat agacgcagtg tacaggttac caattatgct cgatgcttcc
     1741 aaagaactcg acattttttt ctcatacact tcgttgtaaa atgaagtttg cataaagctc
     1801 ttcctaaatc gttcatccgc cttcatgaac tcggtgtcag ccaagataga ctcgatagtt
     1861 ccacgaggat cttttggtac tggttcagca aaacctattt ccttaattac tgaatcccat
     1921 ctcggcagtg tcctccattc atgcctaagc agatatgcca aagccttctc ccccatcttc
     1981 ctgtagggta agtgaactgt gaataaatct atatgatcag taattgactc accgtcgttt
     2041 atccgaatca atcccgtcct aatggccttt tctttgtagc tgtcaaatgc ttttctgacc
     2101 tgaatgaggt acaacagatt tgagtaagtt ccatttacca gtggagtttc cttaccaaac
     2161 ggtcggtaga aatcatattc attcttgatg gtcgttgacg tcaccttagg atcaaatgaa
     2221 agaagtcgag gaacttcttt aatcagcatg gccacggccc cggccccttg agtatattct
     2281 ccagacgaac caacatcata cttggcaata tcgctgacaa caacgatcgc tgccttgttg
     2341 ttgttctctt ctgcccttat ccaattggcg ttatcataaa gcgcataaga accactcaca
     2401 catgcaaatt tgcattctat tccaccagca tgctcaaatg agtcctcgcc gtatatctgt
     2461 tctaacatcc cgaccacaaa tgaattcatc gctttcgact catctaagcc cgattcagtc
     2521 gcaacgtaga gcctaccgat atcgtccggc tccaggtgat ttctttgcat aagttttaga
     2581 caagcattag ctgccatgca agctgaatct tggtttgtat caactatagt cattttccta
     2641 atcccaatac cgtattctaa tttttgggga tcaatacccc ttgcctcggc aaaatccctg
     2701 taatccaggt aaagttttgg aatataaata gcaagatcgt caatgcctac tggcataatg
     2761 gagctttgtc tcattataga catttaaagg tacttataga aattattgac tattcacatg
     2821 aaagtttatg aactagtaac cgccttatta gtaatcccac agacgagaac gaactaaaga
     2881 aaaatacact ctttatattc tatattaatg ctttttgaca agtctataga agttatcgcg
     2941 ttcgt
//
LOCUS       DASSIK010000040         3269 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1291508, whole genome shotgun sequence.
ACCESSION   DASSIK010000040 DASSIK010000000
VERSION     DASSIK010000040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3269)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3269)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3269
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1291508"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..343)
                     /locus_tag="VFI64_00680"
     CDS             complement(<1..343)
                     /locus_tag="VFI64_00680"
                     /inference="COORDINATES: protein motif:HMM:NF012965.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004488 - methylenetetrahydrofolate
                     dehydrogenase (NADP+) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetrahydrofolate dehydrogenase/cyclohydrolase
                     catalytic domain-containing protein"
                     /protein_id="HET7241831.1"
                     /translation="MPAKKIDGLMVSRYLKDKIRKDVSKLTEHGIKPCLATILIGDDE
                     ASAMYVRNKQLAATDVGILTIDKRLPSSASAEELINLLDELNSDKYVHGILLQLPLPK
                     HIDQFSAISRID"
     gene            complement(443..1096)
                     /gene="purN"
                     /locus_tag="VFI64_00685"
     CDS             complement(443..1096)
                     /gene="purN"
                     /locus_tag="VFI64_00685"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004644 - phosphoribosylglycinamide
                     formyltransferase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HET7241832.1"
                     /translation="MINLGILISGRGSNMEAILRAIEMSKIKDVVPRIVISNKPNAPG
                     LQKAAKMGVSTKVVYNSARGWEYDKEIVSVLRDHLVNQQNGLICLAGYMRIISPEFIN
                     LFKGRILNVHPSLLPAFPGLHAQKQALEYGVKVSGCTVHFVDVGVDTGPIVAQRTIEV
                     EDQDTEETLSNRILMQEHELYIECINRFAQGRLSTLGRRVCIKSCKERKSQEIRQAQ"
     gene            1292..1468
                     /locus_tag="VFI64_00690"
     CDS             1292..1468
                     /locus_tag="VFI64_00690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0006725 - cellular aromatic compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tautomerase family protein"
                     /protein_id="HET7241833.1"
                     /translation="MPLISVSMYPGRSKEQKAEFAAAITEAAIKILKTKKEHVIIVYK
                     ENPKENWFMSGEPL"
     gene            complement(1660..2907)
                     /gene="cofH"
                     /locus_tag="VFI64_00695"
     CDS             complement(1660..2907)
                     /gene="cofH"
                     /locus_tag="VFI64_00695"
                     /EC_number="2.5.1.147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-amino-6-(D-ribitylamino)uracil--L-tyrosine
                     4-hydroxyphenyl transferase CofH"
                     /protein_id="HET7241834.1"
                     /translation="MLEGIMKNIDSVVAHILNEALDSKDISIKQAVELFDTSGIEISA
                     ITMVADMLRKRSVGDIVTYVVNRNINFTNVCIKKCGFCAFSRDFRNEEGYFLPVEEII
                     RRTTEAWKLGATEVCIQAGLPPKMDGNLYIDICEEIKKAHPEIHIHAFSPEEVQYGAY
                     CSGKPVEEYLKMLKDAGVGSLPGTAAEILNQEIRDIISPGRISAKEWINVIKCAHKLG
                     IPTTSTIMYGHIESSMHKAEHLALIRSIQKETKGFTEFVPLSFIYKEAPMYYRNSIRG
                     MRQGPDGNEILKMHAISRIMLNNYIKNIQVSWVKEGLKMSQILLSAGVNDFGGTLINE
                     SISTSAGAEYGQMMKPKEIHHVVKSAGKIPAQRSSTYRILKEFSQAEDDHALPLDTAD
                     PATFGSYQELVKIGKYRYAEMKR"
     gene            complement(2913..>3269)
                     /locus_tag="VFI64_00700"
     CDS             complement(2913..>3269)
                     /locus_tag="VFI64_00700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7,8-didemethyl-8-hydroxy-5-deazariboflavin
                     synthase subunit CofG"
                     /protein_id="HET7241835.1"
                     /translation="LNYFIRIIAISRIIMPDMNIQVPPNLSPNNYGLYVDAGINDWGG
                     ISPLTIDHVNPESPWPDIKELTDVTKRSGYILRPRLPVYPEFILDKNEFIHDNLWKYI
                     RALSGSDGLVRDQYLN"
BASE COUNT          938 a          672 c          583 g         1076 t
ORIGIN      
        1 tatcgattct gctgatcgct gaaaattgat caatatgttt tggtaacggt aactgtaaaa
       61 gtatgccatg aacatactta tccgaattca attcatctaa taagtttatt aattcttctg
      121 ccgaagcaga gcttggtagt ctcttatcga tcgttaaaat gcctacatca gtagctgcta
      181 attgtttatt tcgtacatac atagctgatg cttcatcgtc accaattaat attgttgcta
      241 ggcaaggctt aattccatgt tcagttagct ttgatacatc ttttctaatc ttatctttca
      301 ggtacctcga gaccataagg ccatcgatct tttttgcagg caattgaata aggaaatcta
      361 gggtagttat tttgttttgc tgttggaggg actcgtaaag tgaacgtaaa aagaatacct
      421 atctgttaag atgaaaggat gattactgtg cttgtctgat ctcttgactt tttctttcct
      481 tgcaagactt tatgcaaacc cggcgtccta gagttgacaa cctgccttgg gcaaaccggt
      541 taatacactc aatatagagc tcgtgttctt gcatcagtat tctgtttgaa agagtctctt
      601 ctgtatcctg gtcttcaact tctatggttc tctgagctac aatagggcca gtatctaccc
      661 cgacatcgac gaagtgtact gtgcaaccag agaccttgac accatattct aaagcttgct
      721 tttgagcgtg aagaccggga aacgctggaa ggagggaggg atgaacgtta agaatccttc
      781 ctttgaataa gtttataaat tcagggctaa taatgcgcat atatcctgct aaacatatca
      841 agccattttg ctgatttacc aagtgatccc ttaatacgga aactatttcc ttgtcatatt
      901 cccaacctct tgcagagttg tatacaacct tcgtagagac acccatctta gcagcttttt
      961 gaagacctgg tgcatttggc ttattagaaa taactattcg aggaacaaca tccttaatct
     1021 ttgacatttc gatagctcgt aatatggcct ccatattact tcctcttccc gaaattaaaa
     1081 tgcccaagtt tatcaagttc tcgattataa tatccgtgta ctcgtaaata tagtgctttg
     1141 ttctattatc ttaagaacat gttttaaatg atcgagtctt taccaaacct gaacctttgg
     1201 tatttcttat tagtcaactg atttgaccaa tatgtaaatt ctgagattaa gaccgcaatt
     1261 agtttatttt agtgtttgag aaactatagt tatgccatta atttcagtct cgatgtaccc
     1321 tggccgatcg aaagagcaga aagcggaatt tgctgctgca attacggaag cagccattaa
     1381 gatactaaaa acaaaaaaag aacacgtcat tattgtttac aaggaaaatc ccaaagaaaa
     1441 ttggtttatg tcaggagaac ctctttgatt aaattttttg atgagcaaaa gtttgttagc
     1501 cttaccgttc taaaaagatt aatttttttg tataaaagga tcctgaattg atgctgaaaa
     1561 cagataaacc tagtatgagg cactaacgga gtaacatact aaccatactg cctacaatta
     1621 agtcgtaaat gatcttactt tcatttccac tttggttatc tatcttttca tttcagcgta
     1681 tctgtatttg ccgatcttta ccaattcctg ataggagcca aacgttgccg gatcagcagt
     1741 atcaaggggt aaagcatgat catcttccgc ctgactaaat tcttttaata ttcgataagt
     1801 tgaagatcgt tgtgcaggta tcttgcctgc tgattttacg acatgatgaa tctctttggg
     1861 tttcatcatc tgcccatact cagctccagc agaggtagaa atactttcgt taattagcgt
     1921 tccaccaaag tcgttgactc cggctgagag aagaatttgt gacatcttta atccctcttt
     1981 gacccaagaa acttgaatgt ttttgatgta gttattcaac attatccttg agatcgcatg
     2041 cattttgagt atctcatttc catcaggacc ttgtctcatg ccacgaatag aatttctata
     2101 gtacatggga gcttccttat atataaaact caaaggtaca aattcagtga agccttttgt
     2161 ttctttctga atggacctaa tgagtgccaa atgctctgcc ttatgcatcg aagattctat
     2221 atggccatac attatcgtgg atgtagtagg aatgcctaat ttgtgagcac acttgatgac
     2281 gtttatccac tccttggcag atattcttcc gggagaaatt atatcacgta tttcttgatt
     2341 caatatctct gcagctgtac caggtaaact tcctacacct gcgtctttca acatcttaag
     2401 atactcttca acaggctttc ccgaacaata ggctccatat tgtacctctt caggagaaaa
     2461 agcgtgtatg tgaatctctg gatgcgcttt ttttatttcc tcgcatatat caatatacag
     2521 attaccgtcc atcttgggtg gaagcccggc ctgaatgcaa acctcggtcg ctcccagttt
     2581 ccatgcttca gttgtccgcc ttatgatttc ttcaacagga agaaaatatc cttcttcatt
     2641 cctaaagtcc ctactgaagg cacagaatcc acacttctta atgcaaacat ttgtgaagtt
     2701 gatgtttctg ttcacgacgt atgttactat gtccccaaca gaacgctttc taagcatatc
     2761 tgcgaccatc gtaattgcgc ttatttctat accactagta tcaaataatt cgactgcctg
     2821 tttgatggaa atatctttcg aatctagagc ttcattcaat atgtgggcaa caaccgaatc
     2881 tatattcttc attatacctt ctaacattga tgtcaattca agtactggtc ccttacaagt
     2941 ccgtctgatc cagaaagagc tcttatatat ttccacaaat tgtcgtgtat gaactcattc
     3001 ttgtcaagaa tgaattctgg atataccggt agccttggcc tcaaaatata gcctgatctc
     3061 ttagtaacat ccgtcaattc tttgatgtct ggccaaggtg actcgggatt cacatggtca
     3121 atggtaagcg gagaaatacc gccccaatca ttaattcctg catcgacgta caacccataa
     3181 ttattagggc ttaaattggg aggtacttgt atattcatat cgggcataat aatcctcgaa
     3241 atggcaataa tcctgataaa ataattaag
//
LOCUS       DASSIK010000041         2542 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1090000, whole genome shotgun sequence.
ACCESSION   DASSIK010000041 DASSIK010000000
VERSION     DASSIK010000041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2542
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1090000"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..321
                     /locus_tag="VFI64_00705"
     CDS             <1..321
                     /locus_tag="VFI64_00705"
                     /inference="COORDINATES: protein motif:HMM:NF026297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HET7241836.1"
                     /translation="MLSFNFPNMKNRSRYEVIAAILKSANREETRTKIMYKAMLSNDQ
                     CKIYLDSLLQSGLIQEVYNGTKMVYKITHKGNTFLSYYDQMKELLPVGLEENYTEEYY
                     KLST"
     gene            complement(322..1725)
                     /gene="gvpD"
                     /locus_tag="VFI64_00710"
     CDS             complement(322..1725)
                     /gene="gvpD"
                     /locus_tag="VFI64_00710"
                     /inference="COORDINATES: protein motif:HMM:NF018455.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gas vesicle protein GvpD P-loop
                     domain-containing protein"
                     /protein_id="HET7241837.1"
                     /translation="MSKPSIDSNDIPPELKQFLQRDTYSLLIRGKYGSGKTALSLTIL
                     RSLKATDNFFYISTRTSPTQLFDYYPWLSKFVKKQDSLNQYVNSEEHPVHPCFEDARL
                     DEPESLFERITNQLMDIKSPIIIIDSWDAIASLMDKESRINNERVLQTWRERAGARII
                     FITEGVQDSGLDYIADGVVELSNDISDNTAIRKLTITKLRGVPIEKTTYLFSLKGGVF
                     KCFSKYLPLEYNNLIHNLANRLGTQIVFRGSNISMQSGFTDLDRALGGGYREGSIVIV
                     KADKILSHILPLLFLERTIKEFMYKDGEIVVSGSSILYSLNQIISVPINRTAGKSSRF
                     LHFKFESQKLKRNERNLQNNAACTELTSLLDLQKFKKKNKTLNLMGLDTLQNTMTKEG
                     MNLYDVSRLLKINFTLSFIIVNSDDDIQRYKSICDIYLKFVVISGTLILKCVLPSLGA
                     FGVKLSDSQRLQLLRSL"
     gene            1977..>2542
                     /locus_tag="VFI64_00715"
     CDS             1977..>2542
                     /locus_tag="VFI64_00715"
                     /inference="COORDINATES: protein motif:HMM:NF014808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M17 family peptidase N-terminal
                     domain-containing protein"
                     /protein_id="HET7241838.1"
                     /translation="MVGIIVTQEDVFHSDSRFIAMGIFKDDIDSFTLDQFNNDAENLK
                     KDVISKGEFKGNFGDACLLHINNHKAVTKIFLVGLGKKKDFTHESARLLAGKVVQKVK
                     ELGSREFSLALMNELSNDFLSSLVEGLKLADYSFNKYKTDKIKNYQNEVENAFIIASD
                     DNEGLEKIARQASIISDAVNFARDLGNLP"
BASE COUNT          811 a          442 c          485 g          804 t
ORIGIN      
        1 atgttatcct tcaattttcc gaatatgaag aatagaagta gatatgaggt tatagcggct
       61 atcttgaagt ctgctaatag agaggaaacg cggacgaaaa taatgtataa agcaatgtta
      121 agtaacgatc agtgtaagat atatcttgat tctctgctac aaagtggcct catacaagaa
      181 gtgtacaatg gcacaaagat ggtctacaaa attactcaca aaggtaacac gttcttgtca
      241 tattatgatc agatgaagga attattgcca gtcggtttgg aagagaatta cacagaagag
      301 tactacaaac ttagtactta attataaaga ccggagcagt tgcagccgtt gactatcaga
      361 aagcttaacc ccaaatgcac ccagtgacgg cagtacacat tttagaatca gggtaccact
      421 aattactaca aacttaaggt atatatcgca aatagacttg taccgttgga tatcgtcatc
      481 gctatttacg atgatgaagg acagcgtgaa attaatcttc agcaatctcg aaacatcata
      541 aagattcatg ccctccttgg tcatcgtgtt ttgaagtgta tccaatccca tcaaattaag
      601 ggtcttattt tttttcttaa atttttgaag gtctaacaaa gaggtaagct cagtacatgc
      661 agcattgttt tggaggtttc tttcattcct tttgagtttt tgcgattcga atttgaaatg
      721 taggaaccta gagctctttc ctgcagtcct gtttatcgga acactaatta tttgatttag
      781 tgaatataga atcgaagatc cactcacgac tatttcaccg tccttgtaca taaactcttt
      841 aattgttctt tccagaaata gcaatggcaa tatatgtgac agaattttat ccgcttttac
      901 tatcacaata ctaccttctc gatacccccc acctagtgcc cgatccagat ctgtaaagcc
      961 actttgcata gaaatgttac tgcctctgaa tactatctgg gtacctaatc gattggccag
     1021 attatgaata aggttattat attccaaggg caaatattta ctaaagcact taaatacacc
     1081 tccctttaga gagaaaaggt aagtagtttt ttctataggg acgcccctta gctttgtaat
     1141 cgttagcttt ctgattgctg tattatcgga aatatcgtta cttagttcca ctacgccatc
     1201 agcaatataa tctaagccag agtcttggac accctcggta ataaaaatta ttcttgcgcc
     1261 tgccctttct ctccaagtct gaagaacacg ttcattgtta atgcgtgatt ctttgtccat
     1321 taaagatgct attgcatccc aactatcgat tatgatgata gggcttttga tgtccattaa
     1381 ttggttagta attctttcaa aaagtgattc tggttcgtct agacgtgcat cctcaaaaca
     1441 gggatgaact ggatgttcct cagaatttac gtattgattt aaactatcct gtttcttcac
     1501 aaacttggac agccaaggat aatagtcaaa aagttgcgtc ggggatgtcc tcgttgagat
     1561 gtaaaaaaaa ttgtctgtcg cttttaatga ccttaatata gtaagtgaaa gtgcagtttt
     1621 tccactccca tattttcccc ttatcagcag tgaataagtg tcacgttgca ggaactgctt
     1681 taattctggg gggatgtcgt ttgaatctat actaggtttt gacatttttc atctttgtta
     1741 aatgatatac tgttgtgata tattgacatt taataggtct tttgatagac tttccaatga
     1801 tatttcatta gttgattcat tttatttact ctaacaaaga gtatattgaa gagggcaaaa
     1861 tagagaatta cggacatcct aaatgaatga atgtaggaaa tggtaataac acaggttcaa
     1921 tgggttgcaa aatagacttc ggtactttaa aataaagtgc attagagggt ttgatcatgg
     1981 taggaataat agttacgcaa gaggacgtgt tccactcgga cagtcgattt atcgcaatgg
     2041 gcatttttaa agatgatata gattcgttta cacttgacca attcaataac gacgcggaga
     2101 acttgaagaa ggatgtgatt tcaaaaggag aatttaaagg aaattttggt gacgcttgtc
     2161 ttttgcatat aaataaccat aaagcagtaa cgaaaatctt tttagtgggc ctaggcaaaa
     2221 aaaaggattt tacacatgag tcagctagat tgctcgctgg caaagtcgtt caaaaagtaa
     2281 aggaacttgg aagcagagag ttttcacttg ctttaatgaa tgaattgagt aacgacttct
     2341 tgtcttcatt agtcgaaggt ttgaaattag cggactattc tttcaataaa tataagacag
     2401 ataaaataaa aaattatcag aacgaagtag aaaatgcctt tatcattgca tcagatgata
     2461 acgaaggact cgaaaaaata gcgagacaag catctataat ttccgatgcc gtgaatttcg
     2521 ctcgtgacct tggaaatctt cc
//
LOCUS       DASSIK010000042         5357 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_502927, whole genome shotgun sequence.
ACCESSION   DASSIK010000042 DASSIK010000000
VERSION     DASSIK010000042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5357)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5357)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5357
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_502927"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..282
                     /locus_tag="VFI64_00720"
     CDS             <1..282
                     /locus_tag="VFI64_00720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241839.1"
                     /translation="YYENNKEESLNIMSNKSGVCEQEIKNGLESVTLPSLRENAVNIM
                     NSKSNEPISLFSSGKYISEFFLNRGQISEYPDFNQIVDPDFVNALKTLR"
     gene            complement(726..935)
                     /locus_tag="VFI64_00725"
     CDS             complement(726..935)
                     /locus_tag="VFI64_00725"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HET7241840.1"
                     /translation="MPDFSGFDVIKSLKQDGLLESKNIVIFTASSNQDLLYAVRNNGV
                     KEIFKKPFSLDQLIALIEKYRPGIK"
     gene            complement(948..1097)
                     /locus_tag="VFI64_00730"
     CDS             complement(948..1097)
                     /locus_tag="VFI64_00730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241841.1"
                     /translation="MKILVVEDNIDISEVMSTFCGARKDIVCQVTNTGHEGLDRIRAE
                     HFDLI"
     gene            1196..1777
                     /locus_tag="VFI64_00735"
     CDS             1196..1777
                     /locus_tag="VFI64_00735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241842.1"
                     /translation="MNTTMIYGLVVISIFSYVLTIEPIYAQNIENWLTYTDSAKRFIL
                     FYPPDLELKGRENFLSSVDVTLGNQNFDRGFKITVTYNDDDKSLLDHVKGLGISPENY
                     LLAVEEQLKPSYQVYNVGTKFLRSENLYGFPTVSNTVDYTNLLGESGRTKNVLAIVNG
                     KGSFLLSYSNSLEGYNGYLPTINQIIKSIVILK"
     gene            complement(2007..2420)
                     /locus_tag="VFI64_00740"
     CDS             complement(2007..2420)
                     /locus_tag="VFI64_00740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241843.1"
                     /translation="MKAKQDIIFSGEAYRYFVNSARSVSTKNSYTKALWLYMKFKCLT
                     DREQLLTGELKPIQSNIIELLIHLKEVQNLSYASISLYCTASPFLLHSILLFPSVGYK
                     TPMGLFVARRNSPPESAALLLERVPIMISCIVFMK"
     gene            2509..2835
                     /locus_tag="VFI64_00745"
     CDS             2509..2835
                     /locus_tag="VFI64_00745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241844.1"
                     /translation="MLYSKSKYITIAAIVYLVIFFAFASGLVNSIIEGSRTKAFVVPS
                     RSIQTIGETIVTVMILFMGMFGAYLLYLVGKATSVKNQWAFVTSGFVVISIALVLGFN
                     LVKIKT"
     gene            complement(2832..3515)
                     /locus_tag="VFI64_00750"
     CDS             complement(2832..3515)
                     /locus_tag="VFI64_00750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241845.1"
                     /translation="MNMIYDSLLDSGGLNTIIYNDPYAKLCLVSSIILELQEERRKKA
                     LYIDLDTVFTAYVKAGLIPQLTIKKMEPSIYTSDILRIYIPDEMIELSILDSIKYIDE
                     ASIVIFDSITSFYSLFYNELESDTSVTREMGRINQLLLILLMLLLKNTSFSKIPLLLT
                     SMIRYKRKGGWIGTPTGNRFLRSRSSVNLYVEMENERDLSINVLSHPTITPQKIIFRD
                     KGIRITRVN"
     gene            3547..4731
                     /locus_tag="VFI64_00755"
     CDS             3547..4731
                     /locus_tag="VFI64_00755"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HET7241846.1"
                     /translation="MSYDQDLELIRKDFPVVKKKIYMNNGSFAPIPISTIKAMTDFLL
                     RYSEEGPDSTSVQEYITSLMKEVRDRVSHLINCDPEEVIFTQSTTEGINQISTGIPWK
                     ESDLIIVRGGPHEHYANYFPWLKVSEKFGVEIKEIKIDVDGFFDTDEIERIARNKNAK
                     LITLSHALYNNGAIMPVEEIGKIARDNNVLYCIDAAQTVGSIRVDVKRIGCDFMAFPS
                     FKWICGPTGIGILYCSKKSSEVLTPQYVGGESAILTDHRNLASVEFPQRFQTGFRNYV
                     GLAGLESSLRYILRIGIDSIRKMNMKIADELRGSLEKMEDVSIYGPQDERLRTSILPF
                     GAKSSDAKTIVSKLEDYGIIVAERDIEGAGKKKVVRASPHFYNDQSEVESFVKSLNMI
                     LK"
     gene            complement(4723..4995)
                     /locus_tag="VFI64_00760"
     CDS             complement(4723..4995)
                     /locus_tag="VFI64_00760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HET7241847.1"
                     /translation="MPTAYVLINCDLGSEEEILQEIRKLPEVTEVSGVYGVYDIIVKI
                     TSDSMDKLRETITWHVRRIDKVRSTLTMIVIEGQGGRDKKYQAMSF"
     gene            complement(5114..>5357)
                     /locus_tag="VFI64_00765"
     CDS             complement(5114..>5357)
                     /locus_tag="VFI64_00765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241848.1"
                     /translation="LIKRRINAVAIDSPSIDKGMDHNFTCHKMLLSHEILIIENLCNL
                     GQVNDLRFKLLIAPLKFSGATGSPVRAIAIIGQGAF"
BASE COUNT         1700 a          976 c         1035 g         1646 t
ORIGIN      
        1 tactacgaga acaataaaga ggaatctttg aacataatgt ccaacaaatc gggagtatgt
       61 gaacaagaga taaagaacgg gcttgaaagt gtcacgttac cttcgttaag agagaacgca
      121 gttaatataa tgaacagtaa atcaaatgaa ccgatttcat tattttcttc tgggaaatat
      181 atttctgaat tcttcttgaa cagaggtcaa ataagcgagt atcctgactt taaccaaatt
      241 gtcgatccag actttgtcaa cgcgctgaaa acccttcgtt aggcagcatg cttaccttga
      301 atgtctcagg tagttagtaa atccagccat taaccatcaa gactataaat atctctcagg
      361 gaggtatttt cgtatgagcc ttccacttca acgtaattgt ttgttttgtg acggggtata
      421 cgcctctctt gatcctaaga aaggtgatgg aatgtctaca gtgatatata gggatacaga
      481 aagaggtcaa acgaatttga tgtcggtaaa gatagtatct tgtaataaat gcaataacgt
      541 tcaatctttc ttactacctg taagaaagag tcgatagggc cttccgtacc gggtttttca
      601 tcaatggcct atagacgcag taaaatctca ttcgaacatg cccgacgatg aacagaattg
      661 gtgttgcgca actcaaggaa ttgattgcct aatcgaggat tccctttccg aattaagaat
      721 ttagattatt ttatcccagg acgatacttc tctatcaatg ctatcaactg gtctaacgaa
      781 aaaggttttt tgaatatctc tttgacgccg ttattcctca ctgcatatag aaggtcttga
      841 ttcgatgagg cagtaaaaat aacgatgttt tttgattcta ataatccgtc ttgtttcagt
      901 gacttgatta catcaaatcc actaaagtca ggcatggcta aatctagtta gataagatca
      961 aagtgctctg ctcgaatcct atccagtcct tcatgcccag tatttgtaac ttgacagaca
     1021 atatccttcc tcgcaccaca gaaggtactc attacctcgg atatgtcgat attgtcctct
     1081 actacaagaa tcttcaattt tcagcctcac tcatatccat tgttaacttt tggttttgtc
     1141 ctttgtttaa gacgaacgaa ctgttataaa ggatattgac gattcttcta taagaatgaa
     1201 tactacgatg atttacggac ttgttgttat ttctatattc tcctatgtct taactattga
     1261 gccaatttac gcacaaaata ttgagaactg gctgacctac accgattccg caaaaagatt
     1321 catcctgttt taccccccag atttagaact gaaaggaaga gaaaattttc taagcagtgt
     1381 ggatgtaaca ctaggtaatc agaattttga tagagggttt aagattacag taacgtataa
     1441 cgatgacgac aaatcgttgt tagatcatgt taaaggtttg ggtatatcac cggaaaatta
     1501 tttactagcc gtggaagaac aactgaaacc atcctaccaa gtatataatg tgggaacaaa
     1561 atttttacgt tctgaaaatt tatatggctt tcctacagta agtaacactg tagattacac
     1621 caacctcctc ggagaatccg gacgaactaa gaatgtcctt gccatcgtca acggcaaagg
     1681 gtcatttttg ttgtcatact ctaatagtct agaaggctat aatgggtatc ttcccaccat
     1741 caatcaaatc atcaaatcca tagtaattct aaaataggcg gtgttaatct tcccgttgca
     1801 ctttaccagc acaccaaaca agaaatttaa gtcgctccaa attgtcccga ttgtagtact
     1861 gtttctgtag cagctataca gaccagtgat atgacgaaat aacaaatttt tcacctttga
     1921 gtttacattc taataaaatt atctaatgtt tgacaacttg gcctaatgtg actataattt
     1981 tagacttctg tgatgacaat cagtaattat ttcataaata ctatacagct tatcataatt
     2041 ggtactcttt ccaagaggag tgccgcactc tctggtgggc tattgcgtct agcaacaaag
     2101 aggcccattg gagtcttata tcctacggat ggaaataata gaatagaatg gagtaaaaat
     2161 ggtgaggctg tgcaatacag cgaaatagaa gcgtatgata gattttgcac ttctttaagg
     2221 tgaatcagca actcgataat gttggattga ataggtttga gttcgcctgt aagaagctgt
     2281 tcacgatcag ttaggcattt gaatttcatg tataaccaaa gagccttagt gtaagaattt
     2341 ttcgtactca cagacctagc agaattaaca aaataacgat atgcttctcc agagaagatt
     2401 atgtcttgtt ttgctttcaa gcgaggttaa ttgcactatt cagatattaa tgctcatcta
     2461 aataggcgat aaacttaatt atcaatcgat ctgatgaact taattgtgat gctttactcc
     2521 aagtcaaagt acattactat tgctgctata gtatatttgg tcatattctt tgcattcgct
     2581 tcaggtctag taaactcaat tatagaagga tccaggacta aggcattcgt tgttcctagt
     2641 cgatctattc aaactattgg agaaacgata gtgaccgtga tgatcctatt catgggaatg
     2701 tttggtgcat atcttttgta cttggtagga aaagcaacat ctgtaaagaa tcaatgggca
     2761 tttgtaacaa gcggatttgt agttatctct atagcactag tacttggttt taacctagta
     2821 aagatcaaaa cttaattaac tcgagttatt ctaatgcctt tgtcgcgaaa aataattttt
     2881 tgtggggtga tggttggatg agagagcaca ttaattgaca gatcccgctc attctccatc
     2941 tcgacgtaaa gatttacact gcttcttgat ctaagaaacc tgtttccggt aggtgttcct
     3001 atccaccccc cttttctttt ataacgaatc atactcgtta ggagaagagg tatttttgaa
     3061 aatgatgtat tcttcaacag taacattaac aatatcaaaa gaagttggtt gatacgtccc
     3121 atctctcgag taacacttgt atcggactct aattcgttgt aaaataagct gtagaatgag
     3181 gttatggaat caaaaatgac tatcgaggct tcatcgatgt atttgatcga gtctaaaatg
     3241 gatagctcaa tcatctcatc aggaatataa atccgcagaa tatctgatgt gtaaatggaa
     3301 ggttccattt tttttattgt gagctgtgga attaaccctg ctttgacata cgcagtgaat
     3361 accgtatcaa gatcaatgta caaagctttt ttccgtcgtt cctcctgtag ctctaagatg
     3421 atcgatgaga cgagacataa tttcgcgtaa ggatcattgt aaataattgt attgagtccc
     3481 cctgagtcta gcagagaatc atagatcata ttcactttta taatattaga atgaaaggtg
     3541 gttataatga gttatgatca agatttggaa ctcatccgca aagattttcc tgtagttaaa
     3601 aaaaaaatat acatgaataa cggctccttt gctccgatcc caatatccac tattaaggca
     3661 atgacggatt tccttttaag atactctgaa gagggtcctg attcaacttc agtgcaggag
     3721 tatattacat cattgatgaa agaggtcaga gatagagtga gtcatctgat aaactgcgat
     3781 cctgaggaag ttatattcac tcaaagtacc actgaaggga taaaccaaat atcgacaggg
     3841 atcccctgga aagagtctga tcttatcatc gtacggggag gacctcatga acattatgca
     3901 aactatttcc catggctaaa agtgtcggag aaatttggag tggaaatcaa ggaaatcaag
     3961 atagatgttg acggattttt tgatacggat gaaatagaga gaattgctag aaataagaat
     4021 gcaaaactaa ttactctaag tcacgcactt tataataacg gagctattat gcctgttgaa
     4081 gaaataggta aaattgctag agacaataat gtactgtact gcatagatgc ggctcaaacc
     4141 gttgggtcaa tcagagtaga tgtaaagaga ataggatgtg attttatggc atttccgagt
     4201 ttcaaatgga tttgtgggcc aacaggtatc ggaatactct actgtagtaa gaaatcttcg
     4261 gaagtactga caccccaata tgtaggtgga gaatcagcta ttcttactga tcataggaat
     4321 ttagcctccg tcgaatttcc tcaaagattt caaacaggat ttagaaacta tgtaggactc
     4381 gctggtctag aatcctcatt gcgatacatc ttacgtatag gtattgatag catccggaaa
     4441 atgaacatga agatagcgga tgaattgaga ggatctctag aaaaaatgga ggatgtgtcc
     4501 atctatggac ctcaagacga gagattgaga acatcgatac taccatttgg agcgaagtca
     4561 tctgacgcaa agacgatagt atcgaagttg gaggattacg gcattatcgt ggcagaaagg
     4621 gacattgagg gtgcaggaaa gaaaaaagtg gtcagagctt ctccacactt ctacaatgat
     4681 cagtcagaag tagaaagttt cgttaagagt ctaaatatga tactaaaatg acattgcttg
     4741 atatttcttg tcccttccgc cttgaccctc aattacgatc atagtaagcg ttgatctaac
     4801 tttgtcgatt cttctcacat gccaggtaat agtttctcga agcttatcca tgctgtccga
     4861 tgttatcttc acaatgatgt catagactcc atatacacca ctcacttcag taacctcggg
     4921 taattttctt atttcttgta atatctcttc ctcagatcca agatcgcaat ttattaaaac
     4981 ataggcagtt ggcatatact aataacaata ttctaggaag tattaaagtt gttgggaaat
     5041 atgatatcct ttctttaagc agactaagaa acgcctaaac aaagtcaacg accaacgtac
     5101 cgtgatttag tttctaaaat gctccttgcc cgattattgc gatagccctg acaggcgatc
     5161 ctgtcgcgcc ggaaaacttt agaggtgcga ttagtaactt gaacctcaga tcgttcactt
     5221 gccccaaatt gcataaattt tctatgatca atatttcatg tgacaatagc attttatgac
     5281 aagtaaaatt atggtccatt cctttatcga tactagggga atctattgca acagcattaa
     5341 tccttctctt gatgagg
//
LOCUS       DASSIK010000043         3776 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_107536, whole genome shotgun sequence.
ACCESSION   DASSIK010000043 DASSIK010000000
VERSION     DASSIK010000043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3776)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3776)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3776
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107536"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..275
                     /locus_tag="VFI64_00770"
     CDS             <1..275
                     /locus_tag="VFI64_00770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241849.1"
                     /translation="WTFVNTHLKNNITQGIGKGVIMTDDGNGIATATELGRGFHLSPE
                     TMVYPGARVFSVDSNSKLAFLNELVGVTQWEVDSLGNYKTKMWQWK"
     gene            426..2738
                     /locus_tag="VFI64_00775"
     CDS             426..2738
                     /locus_tag="VFI64_00775"
                     /inference="COORDINATES: protein motif:HMM:NF016724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-related protein"
                     /protein_id="HET7241850.1"
                     /translation="MTDSTKEPRFINHLLLRKDSIEFRSYQKSISQCAFGKNTLVILP
                     TALGKTVISLFVCADTLYNYRDKRVLVMAPTRPLVTQHMNSFFSVLKIFEDQIAEVTG
                     KITPAGRRAIWQKKEIRLVFATPEVVKNDIQENRLSLNDFTLLVFDESHRAVKDYAYS
                     YVAEKYVNQSVYPTILALTASPGSDKQRIQDVCDNLFIEQIEYRSEEDPDVKGYINPI
                     EVKWEWFDLPSDFQYIRSILKGMLDEKIKWLVQHRLLRKDPRWIFKRDLINVGEQIRY
                     NLELTMEEQRGSLYVALMQQASALSLMYCSELIESQGSFSLKAFLDRIEEEGGKSHQT
                     LLNDPRIKEIKTLVNRLTTQHPKLMYITDHLRTRYQIAKANYDNGATRHYRSQKQEQV
                     ELIPSNNERPASTLEETVNTLRVLIFTQYRDTARHIVEVLSENGIKASRFVGQAKRQG
                     DPGMKQDEQSSILDSFRNGEFDVLVATSIAEEGLDIPEVDLVIFYEPIPSEIRYIQRR
                     GRTGRKSAGTVMILAAKETIDERHLNASKRRVQKMKQILSSLSTTLKPFKRNILAPNP
                     MTAEELNVIDNVIEKMDTKLKKEVELNLLPEVKNIPIQYVSNQVNKIIRNKRKSLLIL
                     EEERLTGQFRRQVDKTARMIHSLLSKSGKNGLDFDSISEVVAVDSAVLLEAIHRLEKL
                     KRIEWIDDSTIVLVDNLKKISGNIYFVYIEKILQGEALVLVDGKWHARLSHYDYDGPR
                     NLLKKGSEFQAVGELYHNNGVLNLRIKQIV"
     gene            2940..3575
                     /locus_tag="VFI64_00780"
     CDS             2940..3575
                     /locus_tag="VFI64_00780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241851.1"
                     /translation="MSYKKDQKLDNSKFIDEQKALEEAETIAKLAPNEKTRNEAKDVV
                     EKLTESVEGKSTLQDQQEELDKVLDETKKNINKTTNEAKREVSRFAKAIGDLQEQTIQ
                     TTKAIGYELVHLQKEAISTQSAYLPYVERSYALSWTPWISPRIMSEVYTRMVDNFVDN
                     AIATTNLVNNMFLTNMETIQLMMDTTRDYFKLSTDTVKSFKDTLTNPNTNN"
BASE COUNT         1341 a          638 c          782 g         1015 t
ORIGIN      
        1 catggacatt tgtaaataca catctaaaaa acaatattac ccaaggtatt ggcaagggag
       61 ttattatgac agacgatgga aatggaattg caacagcaac tgagctggga aggggatttc
      121 atttgtcacc agaaaccatg gtttatcccg gcgctcgggt tttttcagta gactctaaca
      181 gtaaactagc ctttcttaac gagctagtgg gtgttactca atgggaagtg gatagcttgg
      241 gtaactataa gacaaaaatg tggcaatgga aatgaccaaa taaaatttag acaagggaat
      301 ttccttaatc ttgtctgccc acgcaatttt gttatattca ttcacaattg aattgcagac
      361 gtctgcaata gaaggaagaa tgttttgcac tcgaaatctc ttgcaatttg caggtaaaca
      421 actagatgac tgattcaaca aaagaacctc gatttataaa ccatctcctt ctgcgaaagg
      481 attcgattga atttaggtca tatcaaaaaa gcatatctca gtgtgcattc ggcaaaaata
      541 cacttgtaat tcttcctacg gctttgggca agactgttat atccctattt gtttgtgctg
      601 acactcttta caactatagg gataaacgcg tcctagttat ggcgcctacg agacctctcg
      661 taacacaaca tatgaattca tttttttctg tgctaaaaat atttgaggat caaatagcag
      721 aggtaacagg gaaaataacc ccagctggaa gaagagcaat ttggcaaaaa aaggagataa
      781 ggctagtttt tgcgacccca gaagttgtca aaaacgacat tcaagaaaat cgactatcct
      841 taaatgattt tacgttacta gtctttgatg agtcgcatag agccgtaaag gattatgcat
      901 atagttacgt agccgaaaaa tatgttaatc aatcagttta ccccacaatc ctggcgctta
      961 ctgccagtcc aggctcggac aaacaaagga ttcaggatgt ttgtgataat ttgttcattg
     1021 aacagataga atatagaagt gaggaagatc cggatgtaaa ggggtatatc aatcccatag
     1081 aagtaaaatg ggaatggttc gacctacctt cagacttcca gtacataaga tcaattttga
     1141 agggaatgtt ggatgaaaaa atcaagtggc ttgtccaaca cagattatta cgaaaagacc
     1201 caagatggat ctttaagcga gacttgataa atgttggaga acaaattcga tacaacttag
     1261 agcttacaat ggaggaacag agaggttcat tgtatgttgc cctgatgcaa caggcttcag
     1321 ctctatctct aatgtactgt agtgaactga tagaaagtca agggtcgttt tcgctcaagg
     1381 catttcttga taggatagag gaagagggtg gcaagtcaca tcagacatta cttaatgatc
     1441 caagaataaa ggaaataaag acacttgtaa atagacttac gacccaacat ccaaagctaa
     1501 tgtatattac agatcatcta agaactagat atcaaattgc caaggctaac tatgataatg
     1561 gagccacaag gcattaccga tctcaaaaac aagaacaggt agagcttatt cctagtaaca
     1621 atgagcgccc agcaagtact ttagaagaga cggttaacac tttacgggtt cttatattta
     1681 cccaatatag ggataccgca aggcatatag ttgaggttct ttccgaaaat ggaataaaag
     1741 catcaagatt tgttggtcag gcaaaaaggc aaggtgatcc gggcatgaag caagacgaac
     1801 aatcctcaat cctagattcg ttcagaaatg gtgagttcga tgtccttgtg gcaacttcaa
     1861 tagctgaaga agggctcgac attccagagg ttgatcttgt gatattttac gaaccaatac
     1921 caagtgaaat aagatatata cagagaagag gcaggacagg aaggaagtct gctggcactg
     1981 tgatgatact tgctgcaaaa gaaactatag atgaacgtca tcttaatgca agtaaacgac
     2041 gtgttcaaaa aatgaaacag attctctctt ctctcagcac aacactcaaa cctttcaaga
     2101 gaaacattct agctccgaat cccatgacag cagaggaatt gaatgtgatt gataatgtca
     2161 tagaaaaaat ggacactaaa ttaaagaagg aagtcgaact aaatttactt cctgaagtta
     2221 agaatatccc tatccagtat gtttctaacc aagttaacaa aataattcgt aacaaaagaa
     2281 agtctttgtt aatattagaa gaagaaagac ttactggcca attcagaaga caagttgaca
     2341 agactgctag gatgattcat tctctgttat ctaaaagtgg taaaaatggt ctggatttcg
     2401 actcaatctc tgaagtcgtc gctgtggata gcgcagtatt acttgaggca attcatagac
     2461 ttgagaagct gaagcgaata gagtggattg atgatagtac catagttctt gtggataatt
     2521 tgaaaaagat ttctggcaat atttatttcg tgtatattga aaagatctta caaggagaag
     2581 ctcttgtgtt ggttgatggt aaatggcatg caagattgag tcattatgat tacgacgggc
     2641 ctagaaatct cctcaaaaaa gggagtgagt tccaagctgt cggagaatta tatcataaca
     2701 atggtgtgtt gaatctgagg ataaaacaga tagtttaata ttggaggatt cgggtttttg
     2761 aatcctttat aatttacagt gatgggagac aatgacgtaa ataactcaaa tttagctacg
     2821 tgtatttgaa gaattcagct cattcagatc aataatcgct atttactgag tttatcgttt
     2881 cttattacca gtaaagtgga ggaggaagtc ttatctatga tgatgctgta ttagtattaa
     2941 tgtcgtataa aaaagatcaa aaacttgata atagcaaatt tatagatgag caaaaggcat
     3001 tagaagaagc agaaacgata gcaaagttag ctccaaatga gaaaacgagg aatgaagcaa
     3061 aggatgtagt agagaagtta acggaatctg tagaaggaaa atcaacacta caagaccaac
     3121 aagaagagtt ggataaggta cttgatgaga ctaaaaagaa tatcaataaa acaaccaatg
     3181 aagcaaaaag ggaagtttca cgttttgcaa aggctatcgg agacttgcag gaacaaacca
     3241 tccaaactac caaagcaata ggttatgaat tagttcatct tcaaaaggaa gcaatctcta
     3301 cacaatcggc gtacttgccc tatgtcgaac gatcttatgc cttatcttgg acaccatgga
     3361 tatcaccaag gataatgagt gaagtatata ctcgaatggt ggataatttc gtagataatg
     3421 caatagcaac gactaatctg gtgaataata tgtttctgac aaatatggaa actatccaat
     3481 tgatgatgga taccacaaga gactacttca aacttagtac ggatactgtc aaatcattca
     3541 aagatacttt gacaaatccg aacactaaca actgaccagt acaaagctgg caaatacacg
     3601 gttctataga actatacaga tggcttactc tacgtatttg tttctatacc gattcttaaa
     3661 ggatcattgg cacccctgtg ctacatcgtg ctggggaacg aaaagaattg ggcagcttga
     3721 aagctttact cacaatgcag atgatcttaa aataagttat agcaaacaag atacta
//
LOCUS       DASSIK010000044         2076 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_997665, whole genome shotgun sequence.
ACCESSION   DASSIK010000044 DASSIK010000000
VERSION     DASSIK010000044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2076)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2076)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2076
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_997665"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(587..784)
                     /locus_tag="VFI64_00785"
     CDS             complement(587..784)
                     /locus_tag="VFI64_00785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241852.1"
                     /translation="MSSVGVLREVMQRLEETFNDPQKRESNYFDFYDDSLRIHGFPPN
                     LPANKEGLNSSFMSYGKHFLI"
     gene            complement(999..1451)
                     /locus_tag="VFI64_00790"
     CDS             complement(999..1451)
                     /locus_tag="VFI64_00790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241853.1"
                     /translation="MSEIGLVEIFGMAEAIALIGTLFVILYFSRKQMQSLSLDIETKV
                     LNDLNERMHAITTVGIERPDLVKVLNKANISPEIEFAYNILFTFAHVFHMRQRKVLRD
                     YEWTGWVREIKSTFERGTIMDIWKSNVSMEWFDPAFREFINKEIVPEY"
     gene            complement(1709..>2076)
                     /locus_tag="VFI64_00795"
     CDS             complement(1709..>2076)
                     /locus_tag="VFI64_00795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241854.1"
                     /translation="MVVLNASVVPDDRLQEVRIRLLDEIKVTKKRIHRDLHPLFNLTM
                     QNKIDHVNRILRLMDRYPQMTVKELLYLIECRTEGEKFVISSYRWSVPMLQETYDNRD
                     NLERLQFLVWDAGKVQFAD"
BASE COUNT          591 a          434 c          353 g          698 t
ORIGIN      
        1 aataatttca gttggcaagt atagaccgta tttcattctg ttggtttaat ccgatcagat
       61 atatcactaa cgtgagtgct actatggttg ctactatagc ggcaaccaga aattttagtt
      121 tcacgcgcta tgctacttta atctaataga ttaggtttcc gtcgtataaa aaaaaataaa
      181 gattattctg gttcgggcgg ttgagtaaga cctattacag ccttttcgtt catggaatgt
      241 catatttgta ttattttact tacgaccggc agtagtatca gtaacggtag gagtatgcat
      301 caattacggc ttgtggcatt cccttttcgg aagataaagt ttcaggatta gggcctcaac
      361 tgttccatca acgacagatt gtctataaca ttccagcgtt ctatgcattt tgaatcctga
      421 aaagaaaaaa tggtcatgcc gtttattttg aattctttat ccgtggggaa aaactttcca
      481 tatgctaagt ataaacttac tgtaaattca cctttatgtg tgccggttat gctgtacctg
      541 catgcaacct tatccccttc aataacgata tcttcataag taattcttat atcaggaaat
      601 gctttccata ggacatgaac gaactgttta aaccctcctt gttggcggga agattcggag
      661 ggaaaccatg aattctcaag gaatcatcat aaaaatcaaa ataatttgat tctcttttct
      721 gcgggtcgtt aaatgtttcc tccaatcgtt gcataacttc ccttaatacc cccactgatg
      781 acatcgtcgg aattggtatc gcttttttaa taaggctttc cccttacatt gcaaaaatcg
      841 gtttttattg cttactttag gtctccctct ttaatccgta ctttacttga tattagttgc
      901 aggtttgaat actatcgaag gtaagacata tttcttacgg aaattggctc tccaattgat
      961 tcttggctcg gctgtagtat tcttactatt attgtttttt aatactcagg aactatctcc
     1021 ttgtttatga actctcgaaa agcaggatca aaccactcca tactaacatt gcttttccat
     1081 atgtccatta tcgttccccg ttcaaatgta ctttttatct ctcgcaccca accagtccac
     1141 tcatagtcac gtagtacttt tctctgtcgc atgtgaaaaa catgtgcaaa tgtgaataga
     1201 atattatagg caaattcaat ttcaggcgaa atatttgcct tattcagtac ctttactaga
     1261 tctggtctct cgatccctac ggttgtaatc gcgtgcatcc tttcattcaa gtcgttgaga
     1321 acttttgttt caatatctaa tgacagactc tgcatttgtt ttctggagaa atacagaatg
     1381 acgaacagcg taccgattaa tgcgatcgct tccgccatac cgaatatctc gactaatcct
     1441 atttcagaca tagttaatta atgacaaatt gttatacaaa tcaatttctc gaattcatca
     1501 aaggaaatca acagcaagac tagccttgta ggatcttctt atgattaatc acattcgatt
     1561 caaacttctg tctaaatatc atgtagcccg atctaacttt ggcattctcc aaccataaag
     1621 tcgtgccact ccgggtcgag taactacggc ccatgagagt ttctagtcta aaaaagcaag
     1681 tgatagacct ccgttctgaa tgccggtgtt aatctgcaaa ttgtacttta cccgcatccc
     1741 aaacgaggaa ttgtagtcgc tccaaattat ctctattatc ataagtttct tgaagcatcg
     1801 gtaccgacca acgataagag gaaataacaa atttttcacc ttcagttctg cattcaatca
     1861 aatacagcaa ttctttaact gtcatttgtg ggtatcgatc catgaggcgc aggatacgat
     1921 tcacatggtc tattttattt tgcatagtca gattgaacaa cggatgaaga tcgcggtgta
     1981 ttcttttctt tgtgacttta atctcgtcta agagtcttat tcgaacttct tgaagcctgt
     2041 catctggaac aacacttgca tttaacacta ccatcc
//
LOCUS       DASSIK010000045         4402 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_802391, whole genome shotgun sequence.
ACCESSION   DASSIK010000045 DASSIK010000000
VERSION     DASSIK010000045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4402)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4402)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4402
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_802391"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..527)
                     /locus_tag="VFI64_00800"
     CDS             complement(<1..527)
                     /locus_tag="VFI64_00800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241855.1"
                     /translation="MTLSNREHEKPSSASSGFDFSRSSWLDFRNFASFDKAGYKISKL
                     DGIISKIKQRDSSMFRKVVMAMQTQDVERARSLSLELLELRKTLRILVDSRNAIELVL
                     TRTTGHVETNESTALPNSCKSDKQAVMEPQPELNRDGSSTGTVLINSGVKRYEIYRNI
                     RKSNHLKKSSDRNTK"
     gene            complement(977..1279)
                     /locus_tag="VFI64_00805"
     CDS             complement(977..1279)
                     /locus_tag="VFI64_00805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241856.1"
                     /translation="MSTLDLKKTVHIIVHGQTNLVGTVKEKLIGLGFSENSLLQASLD
                     KVGNEGDYVAMAWPPMTAKQIILNEITGIREDAQEGLGMGAWAKVEQKELSRIPLT"
     gene            complement(1484..2113)
                     /locus_tag="VFI64_00810"
     CDS             complement(1484..2113)
                     /locus_tag="VFI64_00810"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="O-methyltransferase"
                     /protein_id="HET7241857.1"
                     /translation="MSKLDKQALEESSTKNNLSKEEMMLSITHDTGLFLNILLIANKA
                     KRILEVGTSTGYSTLWFADAIIYNHGHNNGTKAITTIESNPTKVTKARRNFVEAGVDD
                     MIEIVEGNALDKLKTLFNFHNQMNFSQKKEEFDFIFFDADKENLIKYFDIVIPFVRIG
                     GILVADNALFPDEYRAVMAKYLAHIKKVKNIRSVTLPIGNGEELSIKLG"
     gene            2985..3296
                     /locus_tag="VFI64_00815"
     CDS             2985..3296
                     /locus_tag="VFI64_00815"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HET7241858.1"
                     /translation="MEKIIELESLMSQLEHEGNYFLDFVNLQHLQAGILRLQPREEDI
                     QEPHPFDEIYFVIRGDGHILINNKKYNIKPHSFIYVPANTEHRFFGNSEEILVAYFFG
                     N"
     gene            complement(3411..3734)
                     /locus_tag="VFI64_00820"
     CDS             complement(3411..3734)
                     /locus_tag="VFI64_00820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241859.1"
                     /translation="MNGNLKPDWIKQLLFIGGSLGLSLLFTYFFGFFVGFILNLVLFV
                     GIIFYIRSRQSKALKSFGFSDERIGGGFLSGRTELKYSCLSCGSEVKGARCKKCGSNM
                     KKPLF"
     gene            complement(3976..>4402)
                     /locus_tag="VFI64_00825"
     CDS             complement(3976..>4402)
                     /locus_tag="VFI64_00825"
                     /inference="COORDINATES: protein motif:HMM:NF012427.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HET7241860.1"
                     /translation="TEIQYIISEGKPNGRTEPRRLSHSGWYYEWCPVRDEIFEKSDLI
                     VMRGGHTAISHAIQFGKPIVTIPIQNHGEQLGNSDKVAKLGIGIKLDPLSINPRKIIS
                     AVQEVLSNNHYLENVQRVKKVADNFDGIDNVLKIIRSYF"
BASE COUNT         1301 a          848 c          755 g         1498 t
ORIGIN      
        1 ttctttgtgt ttctatctga acttttttta aggtgattac ttttgcggat attacgatat
       61 atttcatacc tctttacacc ggagttaatg agaactgtgc ctgtactgct gccatctcga
      121 ttaagttcag gttggggttc cattactgct tgtttatctg atttacatga atttggcaga
      181 gcagtcgatt cattggtttc aacgtgtccg gtagtccgtg tcagcacaag ttcaattgca
      241 tttcttgaat ctacaagaat tcttagtgtc tttctgagtt ctaaaagttc taaagataga
      301 gaccttgccc tttctacatc ctgcgtttgc atggccatta cgaccttcct aaacatgctc
      361 gagtccctct gtttgatttt ggaaataata ccgtccagtt ttgaaatctt atatcccgct
      421 ttgtcgaaag aagcgaaatt cctaaaatct agccaactag aacgtgagaa atcaaaacca
      481 cttgatgcac ttgatggctt ttcatgttct ctgttggata aagtcatgaa tggcttttac
      541 acttattctt attattgaat acggtataaa tcggcgagct tggtgctaag ctcttataac
      601 atgtagagaa ttcaaatact agtacacact caatatttat aggagttttt tattccgtcg
      661 ccctttgcta taatttatat aaagatttac tagaaaattt cttcatcttt tctcaatcct
      721 gccaatcctg tcttaacagt ggaagcacat tctaggcaga gatcttctga aaatggaaag
      781 ctcttcatgc atctcttaca tgtcggcctc tcacactttg gacacgaaat ggttgaacct
      841 tcagtgttgc acaaataaca aaaattcttt tccatgcaac aatatgtatt ggtcgggcgt
      901 aaaagcatat cgtccaatta actttaagat tggatatcgc ttgcgcccaa gcttgaatat
      961 ttgtaaatgc cagtttttat gttaagggta tcctagagag ctccttttgt tctacttttg
     1021 cccaagcgcc catacctaaa ccctcctggg catcttctct aataccagtt atctcgttta
     1081 gtataatctg ttttgcagtc attggaggcc aagccattgc aacataatcg ccttcattcc
     1141 ctactttgtc caaagaggcc tgtagtaagc tattctcaga aaaaccaagt cctatcaatt
     1201 tttccttaac agtcccgact aggttggtct gtccatggac aattatatga acagtcttct
     1261 tgagatctaa ggttgacatt attaatattc agaattaccc gtaggtataa aggtgccgcc
     1321 tgaaagaatg agctaattct ggtattgata gaattatgtg gagtcccaca tactcctttt
     1381 ttgctctggt cttgcactgg agaggtgaaa gcataagcaa gataccgaag cgtcaactta
     1441 gtattgagga ttttctattt agaacgaaaa attcacgttc gagttagcct agttttattg
     1501 acaattcttc accattgcct atcggcagag taactgagcg gatatttttc acttttttaa
     1561 tatgggccaa atacttcgcc ataacggctc tatattcatc aggaaacaat gcgttgtcag
     1621 ctacaagtat tccacctatc cttacgaatg ggatgacaat gtcaaaatac ttgattagat
     1681 tttccttatc tgcatcgaaa aatatgaaat caaattcttc tttcttctga gaaaaattca
     1741 tctgattgtg gaaattaaat aaagtcttca atttatccag cgcattgcct tcaacaattt
     1801 ctatcatgtc atccacgcct gcttcgacga agtttcttcg tgctttagta accttagtag
     1861 ggtttgactc tattgttgta atagctttgg ttccattatt gtgaccatgg ttgtatatta
     1921 tggcatcagc aaaccaaagc gtagaataac cagtagaagt ccctacttcc aaaatccttt
     1981 ttgctttgtt ggctataagc aagatattta gaaatagccc cgtatcgtgc gttatggata
     2041 gcatcatttc ctctttggag aggttattct tggtgctact ttcctctaaa gcctgtttat
     2101 ctaatttaga caataaatgg gcgatctttg aatccagacg atccataggc atcgaaacat
     2161 ctaaatattt atcttttcac gctaggggct ttcgacaaca gaataaatga atgaattgga
     2221 attctcatct ggacataata tactcggccg gttttttatg gaaatggtaa ctcaaatggt
     2281 attgatccag agaatatatt cttctgtggc gattgtggcg attgtggagt ttgaatggca
     2341 tctcctaagt gttcagatga ccatttaaac tgcataaatg gaaagaatcg gattatcggg
     2401 tctatgcagg aatcaaaaac tccacactca cgaaaactaa tggagtcagt tcgtgttgga
     2461 ggcgttagat aaggagtata ggcaaaagta ttctgtgaat aaatcaagcc gagggcaaac
     2521 aaggataaca ctatccaaat tcccacaatt ccgctaatct gtgctacctt agtcgtagtt
     2581 atcgtatttt gatgcaagat aaagtatatc tggactgctt aactggcaat cataagatag
     2641 ttgaataatt cgctgcccta atctaattct gaaagccctg ctgtaatacg atatgtcatg
     2701 aatttcttaa tgaaatcata ttttattttt gaataataca ttctgtcaaa ggcttcatag
     2761 tgtggattga catcaatttg tcataaacat gccttatcac acgttgtagg cacgttggat
     2821 tcattattga ctacagtgtt atggagatta actatgttat tttttcattc cttcgtatat
     2881 catgtaaata ttactcatcc aatttaagat tctggatact aatgaaacta ctacgctagt
     2941 aacattgaat attctaatta tttaatataa tgtgtgattg attcgtggag aaaattatcg
     3001 aattagagtc gctaatgtca caactagagc acgaaggaaa ttattttctt gattttgtaa
     3061 acctgcaaca cttgcaggca gggattttaa gacttcaacc ccgggaagaa gatattcagg
     3121 aaccccatcc gtttgacgag atttattttg taataagagg agatggccat attctgataa
     3181 acaataagaa atacaacata aaaccccact ccttcattta tgttcctgca aatacagaac
     3241 atagattttt tggcaattcc gaagagattc tagttgccta cttttttggc aattgaaatt
     3301 ttgcctactt ttttgttacg tcagccctgt gatgaaaact tttttttcgg tattcttcgt
     3361 cgttaaggaa tgtcctacag gccccctaaa tttacgaaat agtatgactg tcaaaaaagt
     3421 ggttttttca tgttagatcc acatttctta caccgcgcac ctttaacttc cgagccgcat
     3481 gataagcatg aatatttcaa ttcggttctg ccagaaagga atcctcctcc gattctttca
     3541 tcgctgaaac caaaggattt tagagctttt gactgtctag accttatgta aaaaattatt
     3601 cctacaaaca ataccaaatt taatatgaat ccaacaaaaa atccgaaaaa gtaagtgaat
     3661 aataaactta atcctagact cccaccaatg aataacaatt gttttatcca atcgggcttt
     3721 aaatttccat tcatagctat tctgagtata ttatgtcctt attggtttat caatctattc
     3781 ccaaattgaa tccaaatcac aaaccctata agcagccaat gatgaataat ttattgattt
     3841 ctaactcatc catgatgtgg aatgtataac aaatttttct ccttcttttc cattttttta
     3901 gctcccttga aagattagct gttcaaattg aaacatggat caataaaaat agatgatgat
     3961 tatcaaagac gtttttcaaa aataagacct aattattttt aatacattat cgattccatc
     4021 aaaattatct gcaacttttt ttaccctttg gacattttct aagtaatggt tattactcaa
     4081 cacttcttgt actgcactta ttatcttgcg aggattgata ctaagaggat ctaatttgat
     4141 accaattccc aattttgcta ctttgtcaga atttccaagc tgttcgccat gattttgaat
     4201 tggtatagtg acgatgggtt ttccaaattg aatagcatga gagatggctg tatgccctcc
     4261 gcgcattacg atcaaatcgg acttttcgaa tatttcatct ctaacagggc accattcata
     4321 ataccaccct gagtgggaga gtcttctagg ttctgttctt ccatttggtt ttccctcaga
     4381 aatgatgtat tgtatctcag tt
//
LOCUS       DASSIK010000046         2313 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_602005, whole genome shotgun sequence.
ACCESSION   DASSIK010000046 DASSIK010000000
VERSION     DASSIK010000046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2313)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2313)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2313
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_602005"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(122..409)
                     /locus_tag="VFI64_00830"
     CDS             complement(122..409)
                     /locus_tag="VFI64_00830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241861.1"
                     /translation="MKILGSVVTEFILRLMAWLPTKDQGYWTSQMCIVTGPNIDITTK
                     LIRHLKNIFERRLGIYFDNKEQVLELNVFTIEVFPSNPLQSMPDSVTILKD"
     gene            469..630
                     /locus_tag="VFI64_00835"
     CDS             469..630
                     /locus_tag="VFI64_00835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241862.1"
                     /translation="MRVTQGGLAPGEGVLGDSIPLRLYYAYGIRNNFGFNFEPVTGNI
                     WDSENGADD"
     gene            1015..1662
                     /locus_tag="VFI64_00840"
     CDS             1015..1662
                     /locus_tag="VFI64_00840"
                     /inference="COORDINATES: protein motif:HMM:NF012573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005509 - calcium ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HET7241863.1"
                     /translation="MTYKSAYTAFVFPIIFVVLALLPTSISIAFTDTLDCGGEKLCVG
                     TKIDDIMVGDNTSNSMIGLGGIDDMVGIGGDDNMSGNDLADRMIGGEGDDTIAGGNGS
                     DDIIGSTGNDEISGGSGADEIIGGEGNDTIFGGDGGDTIMGGPTDDLIVGEMGTDIMN
                     GQDGDDKIYHAFLNSTTTDGSKDLVVCGHGQDEVWINSSVDGDQVSDDCEIIHRG"
     gene            1921..>2313
                     /locus_tag="VFI64_00845"
     CDS             1921..>2313
                     /locus_tag="VFI64_00845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241864.1"
                     /translation="MNKWIDIIVASLTVISLVIVLIDYILTLSTIQKLAIYLFDLVVV
                     ILLAWDFSLRVKASSNRGSFILRHWYEFPAMLPLILYTVGDTSLFVGVIIHNLRIITL
                     FRVIRLYNLLSLIGGSEFILLAGFSIFAI"
BASE COUNT          667 a          397 c          528 g          721 t
ORIGIN      
        1 gcccctatgc atttgagaga taaatcactt atgaatggat gttaacatag cgctatggag
       61 aactgagttt atgagatcat ttaggaacaa attagctgtt caatccaaag aacgtaaaga
      121 ttcaatcttt caatatggta acgctgtctg gcatggattg aagtggatta gaaggaaaga
      181 cttcaatagt aaagacgttt agctctagta cttgctcctt gttatcaaag tatataccta
      241 accttcgttc aaaaatgttc ttcagatgtc ttattaactt ggttgtgata tcaatgttag
      301 gtcctgtaac tatgcacatc tgactggtcc aatatccctg gtcttttgtg ggtagccagg
      361 ccattaacct caatatgaat tcagtaacaa ccgaaccgag gatcttcatg tctcagtgat
      421 gtttgtcttt atggacgagg tgatcctgtc gatggtagca gtggtatatt gagggtcaca
      481 caaggtggtc tagcaccagg agaaggtgtt ctcggtgact ctattcctct caggttatac
      541 tacgcatatg ggatacgcaa taatttcgga tttaattttg aacctgtaac aggaaatatt
      601 tgggattcag aaaatggtgc tgatgactaa gattaaatca atcttgtaaa accaggattt
      661 gacagtggtt gggcccgtac gtagacaaag tttatgaccg ctcttcccat acggctattt
      721 aacctggtca ttttgaccgt tttcgatcga gttcataatt atttgtgtaa tgtagagtta
      781 ttccatgacg atcgagtact tctctgcgga catattggta gcctctcgtt aatttgctag
      841 cggctggtca gttgtcaagc ggaaaataat catgattgtt aatgggttac tagagtacaa
      901 tttggtcagc attttgaaat tccaatctca acggatcttc caagaactca tctagatagc
      961 accacatgaa attaaaagaa agaatattac tagcgttaga tgatctcgat agcaatgact
     1021 tataaatcgg catatacggc ttttgttttt cccattattt tcgtggtctt agcattattg
     1081 cctactagta taagcattgc tttcactgac accttagatt gtggcggtga aaaactgtgc
     1141 gtcgggacaa aaatagatga tataatggtt ggggataaca catcgaatag catgattggc
     1201 cttggaggaa ttgacgacat ggttggaatt ggaggagacg ataatatgag tgggaacgat
     1261 ctggctgatc gtatgatagg gggcgaaggc gatgacacta ttgctggtgg aaatgggagc
     1321 gatgatataa tcgggagtac cggaaatgac gaaatctctg gcggctccgg agcggacgag
     1381 ataattggtg gagaaggtaa tgacacgatt tttggcggcg acggtgggga caccattatg
     1441 gggggtccca ctgatgattt gatagttggt gaaatgggaa ctgatataat gaatggacag
     1501 gatggggatg acaagattta tcatgcgttt ttaaattcaa caacgactga tggaagtaaa
     1561 gatttggtcg tctgcggaca tgggcaggat gaagtgtgga ttaattccag tgtcgatgga
     1621 gatcaagtta gtgatgattg tgaaattatt catcgaggat aagccattac ttcttaccat
     1681 taatgtatac tgtactgcct cgttctcgta ccaagatccg gtattaagta attagtacat
     1741 cgaaattgag tgccgctaat aaactcgaca caccgaactt aagggataag gtacaatacg
     1801 attttaggca tgtgtcacga cgtacatgct aacatgaaat agccagcatt gaacaaattc
     1861 tcctatcaat caagtttggt agacgtttct tccttttaga atatgtccct ataaatgggg
     1921 gtgaataaat ggattgatat aatcgtagct tccttaacgg ttatttcttt agtcatagta
     1981 ttaatcgact acatacttac gctctctaca atccaaaaat tagcaattta cttatttgat
     2041 ttagtagtag tcattctcct cgcatgggac ttcagtctta gagtaaaagc ttcgtccaat
     2101 agagggagct tcattttaag acactggtac gagttccctg ctatgttgcc attaattctt
     2161 tacactgtgg gggatacgtc tttgtttgtt ggtgttataa tacacaatct cagaattatt
     2221 accctgttca gggtgatccg gctttacaat ctactctcac ttattggtgg aagtgaattt
     2281 atccttctcg caggattctc aatatttgct ata
//
LOCUS       DASSIK010000047        11595 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1386481, whole genome shotgun sequence.
ACCESSION   DASSIK010000047 DASSIK010000000
VERSION     DASSIK010000047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 11595)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11595)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11595
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1386481"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            322..1662
                     /locus_tag="VFI64_00850"
     CDS             322..1662
                     /locus_tag="VFI64_00850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HET7241865.1"
                     /translation="MNYTTMVARNQGERRHQFPNYIQITIILTSNSFVFDLVVMNYTS
                     GLISQTLGSNPNYLVQDFAVIMIVAAIMLVVTFKLKQPMVIGYLLAGMVIGPYTPPFR
                     LIHDINALNVLAELGIIMLMFVIGTEFPIAKLRSVGRTSIIVALSESLGTLTLVFFVA
                     QTLGFSQYDSMFLALAMSVTSTVVTVRVLEELNMLREKSTVLLLGISIVEDIVVITAL
                     GILQSIAATSNVSVVQISVSLAIVAGFIGGVLVLGSKFLPLIIDKVAKTNDYSVLLIV
                     ILGLAFGLSFVSIALGLSVVIGAFLAGVLVAESSSAGIARVITVPLRDVFAALFFVSV
                     GALMDVSKIPVFIIPALVLIVTSFVSKLLIIYVILVRSGYSSTTALRTGLGMSSARGE
                     LSLVVAKGGQDVGAISSFIFPILGVVTVVTTFITPYILRLGSRLKITSKGLEDT"
     gene            complement(1802..1913)
                     /locus_tag="VFI64_00855"
     tRNA            complement(join(1802..1846,1874..1913))
                     /locus_tag="VFI64_00855"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1875..1877),aa:Leu,seq:caa)
     gene            2058..2345
                     /locus_tag="VFI64_00860"
     CDS             2058..2345
                     /locus_tag="VFI64_00860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HET7241866.1"
                     /translation="MKINELRAGMRNVNVNGKVESLGEPRTVNLRTGGTAQVADAVLS
                     DDTGKIKLSLWDDQITMMNEGDEVSIENGYTQAFRGENSLNIGRYGKLAKL"
     gene            complement(2395..3201)
                     /locus_tag="VFI64_00865"
     CDS             complement(2395..3201)
                     /locus_tag="VFI64_00865"
                     /inference="COORDINATES: protein motif:HMM:TIGR00162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proteasome assembly chaperone family protein"
                     /protein_id="HET7241867.1"
                     /translation="MSYFKSGIKSEFLSKIPNLSSPYLICGFPGTGYVGKMVVDHLIQ
                     DFKAVHLANIYCTSFPPRVIIGTDGTVDLTRNSMYYSRHCEAHKDDLVFVTGDAQPVS
                     PESEYYLAEEILKIVTQFDTKQVFTLGAYITGAFAEKPKVYCMSTDLETLHSLSTQDI
                     AHLDNGSVTGMNGLVIGIAKLLDMKGVCFLAETSGYVIDAIASKNILETLMSTINLKV
                     NMESMILRAKDTEMLIRTIEQQIVNKVAPPNSEVGAQVSPKRQPDTGYIS"
     gene            complement(3373..3939)
                     /locus_tag="VFI64_00870"
     CDS             complement(3373..3939)
                     /locus_tag="VFI64_00870"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HET7241868.1"
                     /translation="MKRNLALLPLASIMIMAVLTESSFANAELESLAELSGFSEVPQI
                     FSEALGTAAIKGNGTVLNYQINMTGIGQVTGVDIHQGEETENGDIVVTLFRANASEGP
                     LNGVLAGTITNSSFQGPLAGKGMKDLTDLISQNRTYVNVYTTKFPNGELRGTIVTRGN
                     VSVDGGMNNGSMATTTGTNNGSMATTTS"
     gene            complement(4145..5239)
                     /gene="dph5"
                     /locus_tag="VFI64_00875"
     CDS             complement(4145..5239)
                     /gene="dph5"
                     /locus_tag="VFI64_00875"
                     /EC_number="2.1.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004164 - diphthine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0017183 - protein histidyl modification to
                     diphthamide [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diphthine synthase"
                     /protein_id="HET7241869.1"
                     /translation="MLTFIGIGIYGISGLSQKAAAILANCDLIYIERFTSSISNDDLQ
                     NLTSLFSSSNNKQVIPVKRWFVEDGREILQEAKDRNVALLSYGDPMIATTFMELRLRA
                     IDRNVKVEVVYGASGVTSLISECGLQIYKIGKIVTMMEESHSAISVYNSITIDLQLKC
                     HTLILTEYRSNEDQSIFFLDPRQVILRLLEVEKDLRYNIITFDSFIIVASRIGTKEQK
                     ILSGKVSSLLGIEYGQGPHSIIFPGKLHFIEEEGIMKLTETLDSPSDNTAYLDNIASR
                     MIKKYVPMVHDEINQIRSRETSRLDYNKKIVEMLDNAEYYVDDAINFMDQGKNELAVL
                     SIGYADGLVDCLKYVSQGKKADKSNLSPNF"
     gene            complement(5253..6395)
                     /locus_tag="VFI64_00880"
     CDS             complement(5253..6395)
                     /locus_tag="VFI64_00880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HET7241870.1"
                     /translation="MVSPAYAVELLKNSLEIYTPSRSEGGLANLIKERCMSDLGFERV
                     TIDSVGNVIATKGSGEPKMLLCGHMDTVPGQVPVRIDSGFIYGRGASDAKGPLISMLL
                     AASEFKQKGTIIFAGVVDEEGNATGVKELVKSKLSPDYAIFGEPSGISNITVAYKGRL
                     ALRLICDVGETAHASAPWLAMNSIEEMQYIWNDLKRILNEGNIELNKKSTAVTCSLTE
                     ISGGTSHNVTPQKCKATIDIRIPTNRTCLEILGIVDEIINKLAKQRNVKLTYRIEDMT
                     ESFEAEHSSPLVRALSLSILDVCRTRPMLIRKTGTGDMNVLGNSLKIPVVTYGPGEPH
                     ASHSKDERIEIESYLTSIEVFGRALFHISRLHQIKKQNVNKPKIIN"
     gene            complement(6405..7274)
                     /gene="lysX"
                     /locus_tag="VFI64_00885"
     CDS             complement(6405..7274)
                     /gene="lysX"
                     /locus_tag="VFI64_00885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine biosynthesis protein LysX"
                     /protein_id="HET7241871.1"
                     /translation="MKTGKTGSSLFILYDQLRWEEKAIIESAKKKGIDIGIANCRDTI
                     IDLEQNMEYSDRIMIQRCVSYYNNVHSTAAIEGLGATVINSLQTAIYCGNKLFSHMEL
                     RKAGVPVPRAFCAFSQESALIGLGVRGYPKVIKPVVGSWGRLIALLKDKDSAEAVIES
                     REHMYPLYHVYYLEDYITRPPRDIRAIVVGDNVAAAIYRYSGDGSWKTNMALGGTAEA
                     CEITKDLEDICLRAAKAVKAEIAGVDLMESDEQGLLVHEVNNTTEFKNTVRVTGVDIP
                     SIMIDHCIKLKKH"
     gene            complement(7271..7438)
                     /gene="lysW/argW"
                     /locus_tag="VFI64_00890"
     CDS             complement(7271..7438)
                     /gene="lysW/argW"
                     /locus_tag="VFI64_00890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019878 - lysine biosynthetic process via
                     aminoadipic acid [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-aminoadipate/glutamate carrier protein
                     LysW/ArgW"
                     /protein_id="HET7241872.1"
                     /translation="MTKCPECDAEIKIAEDAMEGEIVTCPDCGASYEIIKSGTVFDLR
                     PAQSIGEDWGE"
     gene            complement(7452..8648)
                     /locus_tag="VFI64_00895"
     CDS             complement(7452..8648)
                     /locus_tag="VFI64_00895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HET7241873.1"
                     /translation="MSLKSDDPNHFAHQLNEPQLITKNIRILDSTLREGEQHPGVAFT
                     IKQRIQIAWMLDSFGVDQIEISPVVSHDHFEATKTIIKQDLRADILAHVRAIKSDVDV
                     AIDTGATWVATYMGISDIHLSAKLRISREEAKIRALEVADYIKSHGLKSRFTMEDASR
                     TDPNFLIEMCKEMNSRGIERISIPDTVGIMRPHGMYNLVRMVCENIDLSRSSIDVHCH
                     NDVGLALANALAGCEAGADQIHTTIDGLGERTGIPSLAETAVALTLIYKVPNNFRLHL
                     LRDLSRTISEYTEIPTPESKPIVGDSAYKHKAGTHLAAILRNPSAYEILEPKIVGNRR
                     KIVFGELAGKNGAAYLLSLLGLETSKAEAEKMAKGLKELRMGDILELYLDERLESKIL
                     NDAQLE"
     gene            complement(8727..9158)
                     /locus_tag="VFI64_00900"
     CDS             complement(8727..9158)
                     /locus_tag="VFI64_00900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HET7241874.1"
                     /translation="MVSESNSLDLDQKILDILKNDSRKSFVDIGKEIGLSESAVRRRV
                     RNLVDTRIIKRFTVDVDSGDKTSAITLLSISSSADTAAVTAKLPEVKGVKIVYEITGQ
                     FDIAAIISAPSISEINHCIDLIRKIEGVHDTNTVIILRTLS"
     gene            complement(9148..10335)
                     /locus_tag="VFI64_00905"
     CDS             complement(9148..10335)
                     /locus_tag="VFI64_00905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HET7241875.1"
                     /translation="MTDVEGEDSYLLNVYQRFPITVERGDGATIWDADGKKYIDCMGG
                     YGVGLIGYSNKKVIAEIEEQLKKIMVCHMSVYNNCRLRFLKKLTHIAPPGVTKIFFSN
                     SGAESVEAALKFARKYSQKPGIISMYGGYHGKTFGALSVTHNTKYRKSFVPLLDHIKF
                     IPYGNLGSLIDAIDDKTGTVILEPIQGETGVILPPDGFLNSVRKICDEKNVVLIFDEI
                     QTGLGRTGKMWAGEHWETVPDIMCLAKGIAAGIPMGVTFLKPKVAEAMRVGEHSSTFA
                     GNPIACAAGNAVLDVISEGNLVKRAAEIGNHFKCGLLELKERHPIIREVRGLGMMLAM
                     EMRFDVRDILLDGIKNGLLMLYSGRNIIRLLPPLIMDKGMVDQALSVMDSLLVAEAKR
                     HSI"
     gene            complement(10332..11093)
                     /locus_tag="VFI64_00910"
     CDS             complement(10332..11093)
                     /locus_tag="VFI64_00910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[LysW]-aminoadipate/[LysW]-glutamate kinase"
                     /protein_id="HET7241876.1"
                     /translation="MHSSAIKDIHNILSNEKLLLVHGGGKEVTSIATKLGKEQRFIVS
                     PGGIRSRYTDKETAEIYTMVMSGKINKLIVKMLLKEEIKAVGLSGIDNHILGAIRKSK
                     LTVINEKGRKMVIDGGYTGKIKTVGTELLNLLLNEGYVPVISPVALSEEFDFLNVDGD
                     RAAAYIAGILGADKVIFLTNVNGLYLDDNLVQKISLEEAKEILPKIGFGMEKKVLACT
                     EALSLGANEAIISSGMVSNPISSAIAHSNCTVISK"
     gene            complement(11129..>11595)
                     /locus_tag="VFI64_00915"
     CDS             complement(11129..>11595)
                     /locus_tag="VFI64_00915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Asd/ArgC dimerization domain-containing protein"
                     /protein_id="HET7241877.1"
                     /translation="YGVIRPYKPAKHRHTGEIEQELGILAHKKVMVSMSPHAVNLVRG
                     ILTTNHVFLKEPVSEIQLWKHYRDAYKSEPFIRLIKDKKGLYKFPDPKFVVGSNFCDV
                     GFDLDEDNNRVVALSASDNLMKGAAGSAIQNMNIMSGFSEVEGLRYTPLTPV"
BASE COUNT         3127 a         2527 c         2140 g         3801 t
ORIGIN      
        1 aaattcgata atgaatgtga gcagaaccat ttgagatatt tccgtatcat tgtaacatga
       61 atcttctcga agaacacgtc gtcgcgctga gggaatcata cttgatcaca agccagcacg
      121 ccctgacgga cttctcctga aaataacttt tacagaggta atggaatacc aatttattcc
      181 gtgcatcatc aagttcaaat tgacatgaat aggctaaaat gtgtataact agtagatatt
      241 cttgagttcg atcccattca taactttcat ttgcatgtga atattttgat ctcttcaaaa
      301 cagcaactaa tctagttccc aatgaattat accactatgg ttgccaggaa tcaaggtgag
      361 aggcggcatc aattcccaaa ctacattcag ataactataa ttttaacatc aaactcattt
      421 gtctttgact tggtggttat gaattacaca agcggtttaa taagccagac attaggttcc
      481 aatcctaact atttagttca agatttcgca gtgattatga tagttgctgc tataatgttg
      541 gttgttactt tcaagttgaa acagccgatg gttataggat atctccttgc agggatggta
      601 ataggtcctt atactccgcc attcagatta attcatgata ttaatgcttt gaacgtcctc
      661 gcagaattag ggataatcat gctaatgttt gtcataggga cagaatttcc aatcgcaaaa
      721 ctcagatcag ttggaaggac ttcgattatt gtcgcgctct cagaatcact aggaactctt
      781 acattagtat tttttgtagc ccagacactg gggttttcac agtatgactc tatgtttcta
      841 gcattagcca tgtctgtaac aagtacggtt gtgacagttc gagtacttga agagcttaac
      901 atgttgagag aaaaatctac cgtactgttg ttggggatat caatagtaga agatattgtc
      961 gtgattactg ccttgggtat tttgcaatct atagcggcaa ctagtaacgt ctctgttgta
     1021 cagatatcag tgtcattggc aatcgtggca ggattcatag gtggagttct tgtccttggt
     1081 tctaaattct tgccacttat cattgataag gtggccaaga ccaatgacta ttcagttctc
     1141 ctaatagtaa ttctcggact ggcattcgga ttatccttcg tcagtattgc acttggattg
     1201 tctgttgtaa taggggcatt cctggctggt gtcttggtcg ccgaatctag cagcgccggt
     1261 attgcccgcg taataacagt tccactacgg gatgttttcg cagcgttatt ttttgtatct
     1321 gtaggtgcat taatggacgt ctccaaaatc ccagtattta taattcccgc tctcgttctc
     1381 attgtaacat ccttcgtatc aaagttgttg ataatttacg tcatactcgt tagatccggg
     1441 tacagtagta ctacggcatt gcggaccgga ctaggaatgt cttctgcgag aggtgaactt
     1501 tcactagttg tagccaaagg cggccaagac gttggtgcta tttcgtcatt catctttcca
     1561 atactgggtg tagtaacagt agtaaccact ttcataacac cttatatctt gaggcttggt
     1621 agtagattga aaataacttc aaagggcctg gaagatactt aaatctataa gagagatttc
     1681 tgggaagttg aatactcatg agtcaggcaa tatacttgtg ccattggggg cgttagtgta
     1741 caggttcttc ctaaagattg ctgatgttaa tttttcttgg atatctgacc gaattttgga
     1801 gtggagggag tgggatttga acccacgaac cccttaggga cgggatttca catgtcacgc
     1861 tgataatatt catcttgagt cctgcgcggt tggccatgct tcgctatccc tcctccatat
     1921 gcttgtaatt caggacatta tttgatctta tctctttcca aagctcctgg aggctagtaa
     1981 gtaaaatgtg tttattaata catcatgtta ttgcatcgta gaatttttat tataggcaat
     2041 aacaaaacat tgggaacatg aagataaacg aactgcgggc aggaatgcgt aatgtcaatg
     2101 tgaatgggaa agttgaatcg ttaggggaac cgaggacggt caatcttagg acggggggaa
     2161 cggctcaagt agctgatgcc gttttatccg acgatactgg taagatcaaa ctgtctttgt
     2221 gggatgatca aataacgatg atgaatgaag gcgatgaagt ttcaattgaa aacggttata
     2281 ctcaagcatt tcgaggggag aacagtttga atataggtag atatggtaaa ttagcgaagc
     2341 tgtaaaaatc cttgttgtaa ggaaggcaca cgacgttaag acaagtatta tgtattagct
     2401 gatgtatccg gtatccggct gtcttttagg agaaacctgc gctccaactt cagaattggg
     2461 cggagccact ttattgacta tttgctgctc tattgttctt atgagcattt ctgtatcctt
     2521 agctctcagt atcatgctct ccatgtttac cttcaaattt attgtggaca ttaaagtctc
     2581 caatatgttc ttagaagcaa tggcgtcaat gacatagcca gatgtttcag ccaagaaaca
     2641 tacacctttc atgtcgagga gcttggctat tcctattact agtccattca ttccagtaac
     2701 actcccattg tcaagatggg caatatcttg agtagataaa gaatgtaacg tctctagatc
     2761 tgtcgacata caatatactt tgggtttctc agcaaaggcg ccagtaatgt acgcaccaag
     2821 ggtaaaaact tgctttgtgt caaactgagt tacgattttc agaatttctt ccgctaagta
     2881 atactccgat tctggactga caggctgtgc gtctcccgta acgaaaacta gatcgtcttt
     2941 gtgtgcctca caatgtcttg aatagtacat tgaatttctc gtaagatcca cagttccgtc
     3001 tgttcctatg attactctgg gagggaatga tgtacagtat atgttggcca ggtgtaccgc
     3061 cttaaaatcc tgtatcaaat gatcaaccac catcttacct acataccctg ttccagggaa
     3121 tccacaaatc aaataaggtg agctcaaatt tggaatcttg cttaagaatt cagatttaat
     3181 tcctgattta aaataggaca tatcgtagta ttacaataaa gattttaaag tattcctgtt
     3241 tttttacaaa caatcactag acataccgaa gacctgtatc cacaatcgtg aatagccgcc
     3301 aacgagaaag aaacaggtgc tgacaagtgc tcgaaatgcc gaaatttcaa actggacgaa
     3361 cagaatatct ccttaactag ttgtcgttgc catgcttcca ttattcgtac ccgttgtcgt
     3421 tgccatgctt ccattattca tgccaccatc cacagacaca tttcctctag taacaatagt
     3481 gcctcgcagc tcaccattag ggaatttcgt ggtatataca ttcacgtatg ttctattttg
     3541 actaattaaa tcagtcaagt ctttcatccc cttgcctgct agtggtcctt gaaaagatga
     3601 attagttata gttcctgcca aaacaccatt aagcgggccc tctgatgcat tagctcggaa
     3661 aagtgtgaca acgatatctc cgttctctgt ttcctctcct tggtgaatgt caactccagt
     3721 tacctgccct attcccgtca tgttaatttg atagtttaat acggtcccgt taccctttat
     3781 cgctgctgta cccagcgctt cactaaaaat ttggggcact tctgaaaatc cagataattc
     3841 tgccaaagat tcgagttcag cgttagcgaa actagattcc gtcagtactg ccattatcat
     3901 gattgaagct agcggcaaga gagcaagatt acgcttcatt agtgttatca taatttactt
     3961 ttataaaaga attgtgtaac tgaatttcta aacctgattt aataaagtca tctgactttt
     4021 tgcgaaatac taatccataa ctcagacaat gttggcaaca tttggattaa atcctatttg
     4081 atcgagtatt tcaaaacctt actattgata ggtatcggaa taggaagtca cctatcctta
     4141 ccaattaaaa gttcgggctt aggttacttt tgtcggcttt cttaccttgt gacacgtact
     4201 ttaaacagtc tactaaaccg tccgcatatc caatggacaa tactgcaagt tcattttttc
     4261 cctgatccat aaagttaatt gcgtcgtcaa catagtactc tgcattatct aacatctcta
     4321 caattttttt gttatagtct aatctagacg tctctcggct gcgtatttga tttatttcat
     4381 catggaccat tggaacatat ttctttatca ttctcgaggc aatattatcc aaataagctg
     4441 tgttgtcaga aggtgaatca agggtctctg ttagcttcat aattccctct tcttcaataa
     4501 agtgtaattt accgggaaaa attatggaat gaggcccttg cccatactct attcctaaca
     4561 aagagcttac tttaccactt agtatttttt gttctttggt acctatgcga gaagcgacta
     4621 tgatgaacga gtcaaaagtt atgatgttgt atctaagatc tttttctact tccagcaatc
     4681 ttaaaattac ttgcctggga tccaaaaaaa atatagactg gtcttcattg gatctatatt
     4741 ccgttagaat gagtgtgtgg cacttgagct gaagatcaat ggttatagaa ttataaacac
     4801 taattgcaga atgactttct tccatcatag taacaatttt cccaatcttg taaatctgaa
     4861 gcccgcattc actgatgagt gaggtcactc cggatgctcc ataaactact tcgactttaa
     4921 catttctatc aattgccctg agtctcaatt ccataaacgt agttgcaatc atgggatctc
     4981 cataacttag caaggccaca tttcggtcct tggcctcttg caggatttct cttccatctt
     5041 caacaaacca tcgtttaact ggaatcacct gtttattatt agacgaagaa aataatgatg
     5101 ttaggttttg taaatcgtca ttggagattg aagacgtgaa tctttctata tatattaaat
     5161 cacagttggc taggattgcc gctgcttttt ggctcaagcc agagattccg tatatgccaa
     5221 ttccgatgaa agttaacatt acaatttgac ctttagttta ttatttttgg tttgttaaca
     5281 ttttgctttt tgatctgatg taatcgtgat atgtggaata atgctcgacc gaatacttcg
     5341 atacttgtaa ggtaagactc tatctcaatt ctttcatctt ttgagtgtga tgcatgtggc
     5401 tcacctggcc catatgttac tactggaatt tttaaagaat tacccaaaac attcatgtcg
     5461 cccgttcctg tttttcttat caacataggt cgagtcctac acacatccaa aatagatagc
     5521 gaaagtgctc tcacaagagg tgaagagtgt tcagcttcga atgattcagt catatcttct
     5581 attctatatg tcagctttac attcctttgt ttggccaatt tgttgataat ctcgtcaaca
     5641 atgcctagaa tttctagaca tgttctgttg gttggtatcc ttatatctat tgtggcctta
     5701 cacttttgtg gcgttacatt gtgactcgtt ccgcctgata tttcagtaag actgcaagta
     5761 acagctgtac ttttcttgtt taattctata ttaccttcat ttaaaatcct cttaagatca
     5821 ttccaaatat actgcatctc ttcaattgaa ttcattgcaa gccacggagc acttgcatgt
     5881 gcggtctcgc ctacatcaca aattagacgg agtgctaatc tccccttgta agcaactgtt
     5941 atattgctta tgccactggg ctctccgaaa attgcatagt ctggggacag cttgctctta
     6001 actagttctt tcacacctgt agcgttgccc tcctcatcaa ctacacctgc aaaaattatg
     6061 gttccctttt gtttaaattc cgaggccgct aggagcattg aaatgagagg tcctttagcg
     6121 tcagatgccc ctcttccata tatgaatcct gagtcaatcc taaccggtac ctgacctgga
     6181 acggtatcca tgtggccaca aagaagcatt ttcggttctc cagacccctt tgttgcaatc
     6241 acatttccta cactatcgat ggtaactctt tcgaatccta aatcgctcat acacctttcc
     6301 ttaataaggt tcgcaagccc tccctccgac ctggagggtg tatatatctc taatgaattt
     6361 ttcagaagtt ccaccgcgta agctggagag accaattcga tttgttaatg tttttttaat
     6421 ttaatacaat ggtctatcat tatagatgga atatctacgc ctgtcactcg tacagtgttc
     6481 ttgaattcag tagtattatt gacttcatgt acaagcaatc cctgttcatc gctttccatc
     6541 aaatctacac ccgctatttc agctttgact gctttggcag ctctcagaca tatgtcttct
     6601 aagtcctttg tgatttcgca ggcctctgcc gtaccaccca gcgccatatt tgtcttccat
     6661 gagccatcac ctgaatatcg gtatatcgct gcagctacat tatccccaac aacgatggct
     6721 cttatatcac ggggaggtct tgtaatatag tcctctaaat agtaaacatg atagagcggg
     6781 tacatgtgtt ctctactttc aataactgct tctgccgagt ctttgtcctt taacaatgct
     6841 atcagtctcc cccaacttcc gaccacaggt tttataactt ttgggtatcc acgtacgcct
     6901 aatcctatta gagcagactc ttgcgaaaaa gcgcagaatg ctctggggac gggaacgccc
     6961 gcctttctta attccatatg tgaaaataac ttatttccac aatagattgc cgtctgcaga
     7021 gaattaatta cggtcgctcc taatccttct atagctgcag tggagtgaac gttattgtaa
     7081 taactgacac atctttgaat cataattcta tctgaatatt ccatattctg ctctaagtcg
     7141 ataatagtgt ccctgcagtt cgcaatacca atatcaattc ctttcttctt tgcagattct
     7201 ataattgctt tttcttccca acgaagttgg tcatagagta tgaaaagaga agatccagtc
     7261 ttccctgtct tcactcgccc caatcctctc caattgattg tgcaggcctc aagtcaaaca
     7321 ccgttccaga cttgataatc tcgtagctgg ctccacaatc tggacatgtt acaatttctc
     7381 cttccattgc atcttcagcg atctttatct ctgcgtcaca ttctggacat tttgtcattt
     7441 ccctaacacc tttattctaa ttgggcatcg ttaagtattt tactttccag cctttcgtct
     7501 agatacagtt ctaatatatc gcccattctc aattctttca agcctttggc catcttttct
     7561 gcttctgctt tggaagtctc caaaccaaga agtgacagaa ggtaagcagc gccattcttg
     7621 ccggcaagtt ctccaaaaac tatctttctt ctgttcccca caatcttcgg ttcgagaatt
     7681 tcataggccg atgggtttct caatatagca gccaagtggg tacctgcctt gtgtttgtac
     7741 gcactatctc ctacgatggg tttcgattct ggagtaggta tttctgtata ttcgcttatg
     7801 gtcctcgata gatcgcgcag gagatgcaac ctaaaattat tcggtacttt atagattaat
     7861 gtgagggcga ccgcagtttc cgcaagtgaa ggtattccag ttcgctcgcc aaggccgtct
     7921 atggttgtgt ggatttgatc agctccagcc tcacatccag ccagtgcgtt agcaagcgcg
     7981 agacctacat cattatgaca atggacatct attgaagatc tggacaaatc aatattctca
     8041 cacaccattc ttacgaggtt atacattcca tgtggtctca ttatgccaac agtatctgga
     8101 atactgatgc gctcaatacc cctagagttc atttccttgc acatctcaat caagaagttg
     8161 ggatcagttc tgctagcatc ttccattgta aagcgtgatt ttaggccgtg tgattttata
     8221 taatctgcca cttctagtgc tctgattttg gcctcctcac gggatatcct tagcttggct
     8281 gaaagatgta tgtctgatat ccccatgtaa gtggctaccc atgtagcacc tgtgtctatt
     8341 gccacatcta catccgattt gatggcccta acatgggcta gtatatctgc ccttaaatct
     8401 tgcttaatta tcgtctttgt tgcttcaaag tgatcgtgag atacaacagg acttatctct
     8461 atttggtcaa cgccgaagga atcaagcatc catgcgatct gtattctctg tttaatggta
     8521 aaggctacac cgggatgctg ttcgccctcc ctgagagtag aatccagaat tcttatattc
     8581 ttagtaatta actgaggttc gttaagctgg tgcgcaaaat gattaggatc gtctgatttc
     8641 agcgacattt ttattctaaa ttagattatt tcgtattaga tataaatctt ctcggctata
     8701 ttcttaatag ccggcagatc tgcatatcaa cttagcgtcc ttagaatgat tactgtattt
     8761 gtgtcatgga ctccttcaat tttgcgaatc aggtcgatgc agtgatttat ctccgatatc
     8821 gatggagcag atattatagc agcgatgtca aattgtcctg ttatttcata aactatttta
     8881 acgcctttga cttccggcag ttttgccgtg accgcagcgg tatctgctga tgaactaatg
     8941 gatagaagtg taattgcact agttttatct cccgaatcaa cgtctactgt gaagcgcttt
     9001 atgatacgtg tgtcaactaa atttctgact cttcgcctta cagctgattc ggataaacca
     9061 atttccttac ctatgtcgac gaatgacttt cttgagtcat ttttaagaat gtccaaaatt
     9121 ttctggtcta gatcaagact attgctttca gatactatgt cttttcgcct ctgctactaa
     9181 aagtgaatcc attaccgaca aggcttggtc gaccatgccc ttatccatta tcaatggggg
     9241 aagtaacctg attatgtttc ttccggaata taacattaag aggccattct tgatgccatc
     9301 aagtaatatg tctcgcacgt caaatcgcat ttccattgcg agcatcattc ctaaacccct
     9361 aacttcccta atgataggat gacgctcttt aagctcaagt agcccgcatt taaagtgatt
     9421 tcctatttca gcggccctct ttactaaatt gccttcactg attacatcta agacagcatt
     9481 acctgctgcg cacgcaattg gattgccagc aaatgtagag gagtgttcac ctactctcat
     9541 ggcttcagct actttgggtt tcaaaaatgt tactcccata gggatacctg ctgcaattcc
     9601 cttggcaagg cacatgatgt caggtacagt ttcccagtgt tcaccagccc acattttgcc
     9661 agtccttccg agacctgtct ggatttcatc aaatatcagt acaacatttt tttcatcaca
     9721 gatttttctt actgaattaa ggaaaccatc tggaggcaaa atgactcccg tttctccctg
     9781 aatcggctcc aaaatcaccg tcccagtctt gtcatcaatt gcatcgatca ggctacctaa
     9841 gttcccatat ggaataaatt taatgtgatc aagtaaagga acaaaagact tcctatactt
     9901 cgtattgtgc gtcaccgata gagcaccaaa tgtcttccca tgatatccac catacataga
     9961 aataattccc ggtttttgac tgtacttgcg tgcaaacttt aaagctgctt ctactgattc
    10021 tgcaccactg ttactgaaaa atatttttgt tacaccgggt ggggcaatat gagttagttt
    10081 tttcagaaat cttaatcggc aattgttata aaccgacata tgacagacca taattttttt
    10141 cagctgctct tctatttcgg caattacctt cttattggaa tagcctatta gaccaacgcc
    10201 atagccaccc atacaatcga tgtatttctt gccgtctgca tcccaaatag ttgcaccatc
    10261 acccctctca actgtaatag ggaatctctg ataaacgttc agtaggtagg aatcctcacc
    10321 ttctacatct gtcatttaga gatcaccgta caattgctgt gggctattgc ggacgagatc
    10381 gggttggaga ccattcctga agaaataata gcttcgttgg cgccaagaga gagagcttct
    10441 gtacatgcta gaaccttttt ttccattcca aaaccaattt tcggcaatat ttcctttgcc
    10501 tcttcaagtg aaatcttctg tactagattg tcatccaaat atagaccatt gacatttgta
    10561 agaaatatta ccttgtctgc acccaggata cctgcgatat aagctgcagc tctatctcca
    10621 tcaacgttca agaaatcaaa ttcttcgctg agtgcaactg gagaaatgac tgggacatat
    10681 ccttcgttta ataacaagtt taataattct gttcctactg tttttatttt accagtgtaa
    10741 ccaccatcga ttaccatctt tcttcccttt tcatttatga cagttaattt gctctttcta
    10801 attgctccca aaatgtgatt atctattcca gaaagaccaa ctgctttaat ctcctccttg
    10861 agtaacattt tgactattag tttgtttatc ttgcctgaca tcaccatggt atagatttca
    10921 gcagtttctt tgtcagtata tctgcttctt ataccccccg gagatactat aaaccgctgt
    10981 tcttttccaa gtttagttgc tatagatgtt acctcctttc ctcctccgtg aaccaacaat
    11041 aacttttcgt tcgacaaaat attgtggatg tcttttatag cggatgaatg caaatcgttt
    11101 actatgctac ccccaatttt tatgacgatc ataccggggt taacggtgtg tatcttaggc
    11161 cttccacttc actaaatcca ctcataatat tcatattctg tattgccgag cctgctgcac
    11221 ctttcattaa attatcagag gctgaaagag ctacaactct gttattatct tcatctaaat
    11281 caaatcctac atcgcaaaaa ttagatccta ccacaaattt cggatcaggg aacttgtata
    11341 atcccttttt gtcttttatt aatctgatga acggttcact tttgtaagca tccctgtagt
    11401 gtttccacaa ctgtatttcc gagacaggct ctttcaaaaa gacatgattg gtggtcaata
    11461 ttcccctgac caaattgacc gcatggggac tcatgctgac cattactttc ttgtgtgcaa
    11521 gtatgcccaa ttcttgttca atttctccgg tatgtctgtg cttggctggt ttgtacggtc
    11581 taatgactcc atatc
//
LOCUS       DASSIK010000048         2479 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1294849, whole genome shotgun sequence.
ACCESSION   DASSIK010000048 DASSIK010000000
VERSION     DASSIK010000048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2479)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2479)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2479
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1294849"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1150)
                     /gene="gcvPB"
                     /locus_tag="VFI64_00920"
     CDS             complement(<1..1150)
                     /gene="gcvPB"
                     /locus_tag="VFI64_00920"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: protein motif:HMM:NF003346.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004375 - glycine dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0006546 - glycine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase
                     subunit GcvPB"
                     /protein_id="HET7241878.1"
                     /translation="MKLIFEYEESISDHVPRIKKQNGNKNNKTENRDFLADLPNDLAR
                     KELPLPNVSEVEVVRHYTNMSRMNFGIDLGFYPLGSCTMKYNPKINEDVASLEGFSQL
                     HPLSHESCIQGSLQLMWELERDFNKITGMDAFSLQPAAGAQGELLGVMITKAFYKQKH
                     EKRTKVLIPDSAHGTNPATAAMCKLETVTVPSDSRGNMDIYKFKESLEEDVALVMLTN
                     PNTLGLFEEKILEISDLAHSNGTLMYCDGANMNALLGITRPGDQGFDLIHLNLHKTFS
                     TPHGGGGPGAGAVGVKSFLADYLPLPRVVKNKEMYILDYSKRKSVGMLKYCYGNFGML
                     VRAYSYIRSWGSDLRRIPEHATLNANYLLSLLRDDFELPFDRRCAHEFV"
     gene            complement(1147..2421)
                     /gene="gcvPA"
                     /locus_tag="VFI64_00925"
     CDS             complement(1147..2421)
                     /gene="gcvPA"
                     /locus_tag="VFI64_00925"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: protein motif:HMM:NF001696.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004375 - glycine dehydrogenase
                     (decarboxylating) activity [Evidence IEA];
                     GO_process: GO:0006546 - glycine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase
                     subunit GcvPA"
                     /protein_id="HET7241879.1"
                     /translation="MDYIPATENDKIEMLRQIGARTIDDLMVDLKPQISRGLDLSEPM
                     SELELVGHMKKLSQKNKILKYFIGAGAYNHYVPSAINHLLMRGEFLTGYTPYQAEMNQ
                     GTLQAIYEFQSFICLLTGMDVANASLYDGSSALAEAVLMSASYNGRNGVFVKDGLNPQ
                     YEQVLKTYCEGADLKIVDEIDEKTACVIVQNPDYYGNMENFQYLSDRAHQFGALFITC
                     VVEPTSLAIVTPPANYGADIVVGEGQSFGIPINFGGPYLGFLAVRSALLKKIPGRVCG
                     MTTDSHGKKGFVLTLQAREQHIRRERATSNITTNVELMAIASTIYLALMGRSGLRNVA
                     KLSYSRAHLLQKKLTRIGFKPLNTKPFYNEFLMKVPTKSSKKILSNLLKNGIVGGINL
                     GNDEILICCTEMNTLEDITSYTSIIKEALKQK"
BASE COUNT          662 a          556 c          463 g          798 t
ORIGIN      
        1 gaacaaactc atgagcgcat cttcgatcaa aaggaagttc aaaatcgtct ctcaacagac
       61 taagcaggta gttggcattt aacgtggcgt gctcaggtat ccttctcaaa tctgagcccc
      121 atgaccttat gtatgaatat gcccttacca gcatgccaaa atttccataa cagtacttta
      181 gcataccgac tgatttgcgt ttgctgtaat caaggatata catctcctta ttttttacta
      241 ctcgaggtaa cggtaaataa tctgccaaaa acgactttac ccccacggcc cctgctccag
      301 gtcctccacc accgtgtgga gttgaaaatg ttttgtgcaa gttcagatgg ataagatcaa
      361 atccctgatc gcctggtctg gtaataccca gtagtgcgtt catgttagca ccatcacagt
      421 acattagtgt accattgcta tgcgcaagat cgctaatctc tagaatcttt tcttcgaaaa
      481 gtcccagggt attaggattt gttaacatta ccagtgccac atcttcttca agtgattctt
      541 tgaatttgta aatatccata ttccctcgag aatcagaggg aacagtaact gtttcaagtt
      601 tgcacattgc cgccgtagca ggatttgtcc catgtgcaga atcaggaata aggaccttgg
      661 ttcttttctc atgcttttgt ttgtaaaaag ccttggttat catcacccct agtagttccc
      721 cttgtgctcc cgctgcaggc tgcagtgaaa aggcatccat tccggtaatt ttattaaaat
      781 cccgttcaag ttcccacatc aattgcagag atccctgaat acaactttca tgtgagagtg
      841 gatgtagttg agaaaatcct tccagacttg ccacatcttc atttattttg ggattgtatt
      901 tcattgtaca cgacccaagc ggataaaatc caaggtctat accaaaattc atccgtgaca
      961 tgttagtata gtgtctcaca acttctacct cactcacatt cggaagtgga agttctttac
     1021 gagccaagtc atttggtaaa tcggccagga aatctctatt ctctgtctta ttatttttat
     1081 ttccattctg ctttttaatc ctgggaacgt gatctgaaat gctttcttcg tattcgaata
     1141 tcagtttcat ttctgtttga gtgcttcctt tataatcgaa gtatacgacg tgatatcttc
     1201 aagagtgttc atttcggtac aacaaattag aatctcatcg ttacctaaat taataccacc
     1261 aactattcca ttctttagca agttcgacag tatcttttta gaacttttcg tgggcacctt
     1321 catcagaaat tcgttgtaaa atggtttagt gtttaaaggt ttaaagccta tcctggtaag
     1381 tttcttttgc agtaagtgtg ctctactata actgagtttg gcaacgtttc tcaatccgct
     1441 tctgcccata agggccaggt agatggtcga agctattgcc atcaattcta cattcgtagt
     1501 tatgttgctg gttgctcgct ctcttctaat atgctgttct cttgcctgga gcgtcaaaac
     1561 aaagcctttc tttccgtgcg aatcagtagt catgccacaa actcttcctg gaattttctt
     1621 caatagagca gacctgactg caaggaaccc aaggtaagga cccccgaaat ttatcggaat
     1681 gccaaatgac tgtccttcgc caactactat atcggcgccg taatttgcgg gaggagttac
     1741 tattgcaagg gaggtaggtt caacaacaca tgtaatgaaa agtgcaccaa actggtgtgc
     1801 cctgtcagaa aggtactgga aattttccat gtttccatag taatcaggat tctggactat
     1861 tacacatgca gtcttttcat caatttcgtc tacaatttta aggtctgctc cttcgcaata
     1921 tgttttcaat acctgttcat attgagggtt caaaccatcc tttacaaaaa ctccatttct
     1981 tccattgtac gatgctgaca tcagcactgc ttctgctagg gcagaagaac catcatagag
     2041 tgatgcatta gccacatcca tgcctgtaag gaggcagata aatgactgaa attcgtaaat
     2101 ggcttgaagt gttccttgat tcatttccgc ttgatatggt gtgtagccag taaggaactc
     2161 tccacgcatt aaaagatgat tgattgcaga tgggacgtaa tgattgtaag ccccagcacc
     2221 gataaaatac tttaatatct tatttttttg tgacagtttc ttcatatgac ctacaagctc
     2281 gagctcgctc attggttcag agaggtctaa tcctctagag atctgcggtt tcaagtcgac
     2341 catcaagtca tcgatagttc tcgccccgat ttgccttaac atctctattt tgtcattttc
     2401 tgtggcagga atgtaatcca tgacctctta tctgtctccc acttttgaca ttcctttgta
     2461 actcatattt ttgacatac
//
LOCUS       DASSIK010000049         3000 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_403075, whole genome shotgun sequence.
ACCESSION   DASSIK010000049 DASSIK010000000
VERSION     DASSIK010000049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3000)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3000)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3000
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_403075"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..494)
                     /locus_tag="VFI64_00930"
     CDS             complement(<1..494)
                     /locus_tag="VFI64_00930"
                     /inference="COORDINATES: protein motif:HMM:NF016304.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241880.1"
                     /translation="MPTRDKRHQEVITRIKAIMKNISDDVLLRQTMPAVELPKIGYDN
                     TIWSDQKRMLTIGNKTVQVGPHSAKKIPTFSQYLVMANAVRRLLDEEMESTIRGMYYA
                     TLSTVGDEKNKQKFWNSQEDSDDAIKAIELMTNVPREEFSVTSKPKGMISGPINLLVG
                     GDLI"
     gene            complement(499..2475)
                     /locus_tag="VFI64_00935"
     CDS             complement(499..2475)
                     /locus_tag="VFI64_00935"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF003218.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase VI subunit B"
                     /protein_id="HET7241881.1"
                     /translation="MKNKTTVEVINKDSKNVSSSHQVNSNYKSKIRYDKKAESEFFVD
                     NSALAGFTGERILYMAVRELLENALDSCESSHILPVIHLQLRILDPDNDMWIISCKDN
                     GVGIPSEKVPVAVCSFLTSGKYVEKQQRGLFGVGLKMIAAFSTKDTDHPLRVWSKSHD
                     EPESYFDLRTDIGTNKPIVLSRRIVNKTECEIEGESGFKVEAVLRARLSPVTKNKIHD
                     YISHTSVVNPYAVLNFESDEGVVAFERRTSVMPNPAKEVLPHPADMDLKTLRKAIVNH
                     AYQKTTLHGVLCNSFQKMSAEKAREIVVKAGLELKLADKYNEHELIRVVNVCKHTKFQ
                     SPNTDHLSPIGEKILTAGMTSEYTVVLRKDIHEDSGPHTQLSAKILKPSLTAYSSRTC
                     VINNRPTIVECGIAYGGDLGSFKLYRFANKIPLLYDEGSDVAREVISEVEINKMGISK
                     KEVKEQFRNAETRSDRAIEYLPIHIFFHICSTKIPYKTAGKESIAAEGDLKRYMKSCL
                     SDLYRKVSAQIRRELKIKENENKLRLYKFYIPFIVNAISDSIRIDVKKLTSAFNGLAV
                     KYIGNELAVTTDPGAIANPAEIEEGLSPKGKVTGGIKSSKKVVYPDKRTVAKTANRSG
                     RHETKEKHESDFENDKKSTQITLDAFRKSKLRKV"
     gene            complement(2549..2707)
                     /locus_tag="VFI64_00940"
     CDS             complement(2549..2707)
                     /locus_tag="VFI64_00940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241882.1"
                     /translation="MEKLRDLVGGQIVGSGSDFVVILKGSKRVLIQFDSHKLVELKKA
                     TTPYGSDC"
BASE COUNT          808 a          632 c          527 g         1033 t
ORIGIN      
        1 tcaattaagt cgcctccaac taggagattt ataggtccag agatcatacc cttgggcttg
       61 gatgtaacag aaaattcttc tcgcggaaca tttgtcataa gctctatagc tttgatagca
      121 tcatcggaat cttcttgact attccagaat ttctgcttat ttttttcatc tcccacggta
      181 ctcagtgtcg cataatacat gcctcgtatg gtgctttcca tttcctcatc caaaagtctt
      241 cttacggcat tggccattac aagatactgg gaaaaagtcg gaatcttttt tgcactatgg
      301 ggtcccacct gaacagtttt gttacctata gtaagcatcc ttttttggtc agaccagata
      361 gtattatcgt aacctatttt gggcagctca acagcaggca tagtttgcct caaaagaacg
      421 tcatcggata tgtttttcat tatcgccttt attctagtaa ttacctcttg atgtctctta
      481 tctcttgtgg gcatgtggct acacttttct tagcttagat ttcctgaatg catctaaagt
      541 tatctgagta ctttttttat cattctcgaa gtctgattca tgcttctcct tcgtctcatg
      601 cctaccgctc cgattggcgg tcttagccac agttcgttta tcaggataaa ctaccttttt
      661 tgatgattta atgcctccgg taacctttcc cttgggagat aacccctctt ctatttcagc
      721 agggtttgca atagcacctg gatcggtcgt tacagccaat tcgttgccta tgtattttac
      781 agcaagcccg ttgaaagcgg atgtcagttt ttttacgtcg attctaatag aatcggatat
      841 tgcatttact atgaatggaa tgtagaactt atataatctc aatttattct cattttcttt
      901 aatcttcaat tccctcctta tttgtgcact tacttttcta taaaggtccg ataaacatga
      961 cttcatataa cgcttcaaat caccttctgc agcaatgctc tcctttcctg ccgttttata
     1021 agggatcttg gtggaacaaa tgtgaaagaa tatgtggata ggcaaatatt caatcgctcg
     1081 atccgatcta gtctctgcat ttcgaaattg ctctttcact tcttttttgg aaatgcccat
     1141 cttgtttatt tctacctcag agattacctc acgcgcgacg tcagagccct catcataaag
     1201 gagaggtatt ttgttagcga acctatataa tttgaaagat cccaagtctc ctccatatgc
     1261 aataccgcac tccactattg tagggcggtt atttatgaca caggtccttg acgaatatgc
     1321 agtcaaggaa ggcttcaata ttttagcaga gagttgtgtg tggggacctg aatcttcatg
     1381 aatatctttt cttaggacaa cagtgtattc ggaggtcata cctgcagtca gaattttctc
     1441 gcctatagga ctcagatgat cggtatttgg tgattgaaat tttgtgtgct tacacacgtt
     1501 cacaactcta attaattcat gttcattata cttatcagcc aattttaatt ccaaaccagc
     1561 tttaacgaca atttctcttg ctttttcagc agacatcttt tgaaatgaat tgcagagtac
     1621 tccatgaagt gtagtttttt gatatgcatg gttgacaata gcctttctca aagtcttcag
     1681 atccatgtcc gcaggatgag gaagcacttc cttagccgga ttgggcatca ccgaagtcct
     1741 tctttcgaaa gcaactactc cttcgtctga ttcaaaatta agaactgcgt aaggattaac
     1801 gacgcttgta tgacttatgt aatcatgaat cttattctta gtaaccggag ataatctggc
     1861 tcgtaacaca gcttctactt taaaaccaga ttctccctct atttcacact cggtcttgtt
     1921 aacaatcctt cttgaaagta ctattggttt gttagttcct atgtctgttc gaaggtcgaa
     1981 gtaagactca ggttcatcat gtgatttgga ccatactcga agtggatgat ctgtatcttt
     2041 tgtagaaaaa gcggcaatca ttttgagacc cacaccaaaa agaccacgct gctgtttttc
     2101 cacatatttg cctgacgtaa ggaatgaaca gaccgcaaca ggaactttct cagatggtat
     2161 acctactccg ttatccttac aagaaataat ccacatatcg ttgtctggat ctagaattct
     2221 tagttgtaaa tgaataaccg ggaggatgtg gctactctca catgaatcta aagcgttttc
     2281 tagaagttct cttacggcca tgtataaaat tcgctcacca gtgaatccag caagagctga
     2341 attgtcaacg aaaaactctg attcggcttt cttgtcataa cggatcttgc tcttgtagtt
     2401 tgaatttact tgatgggaag agctaacgtt cttagagtct ttgtttatga cctctacagt
     2461 tgtcttattt ttcaaatatg caagattgtt ctgaatctaa atttaacttt ttacaatatt
     2521 atactcatta cccgtcattt ggagaatttt aacaatctga cccgtatggg gtagtggctt
     2581 ttttcaattc tactaatttg tgagaatcaa attgtatcaa gactcttttc gagcctttta
     2641 atataacaac aaaatctgaa ccagagccta ctatctgtcc tccaacaaga tctctaagct
     2701 tttccatata tctgatcaaa catgtttctc attaaagttt tatttatttt tgaaccgaga
     2761 agtcaaccta agtgtatcac atctgttatc tacacaaatg accataatct cgaaaatttt
     2821 tagtttatgg acatcatttt gctcagtgtt ctactgtcga tatatgacgg taaatcatgc
     2881 aattgaatgg tgatagtcct aatttgcgca atcgcacgga ggcaatccca ccattttaga
     2941 atccagttat gctagccctc tagttaagac ctttgcaagt caaattgatt ttgctctagt
//
LOCUS       DASSIK010000050         2865 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_602897, whole genome shotgun sequence.
ACCESSION   DASSIK010000050 DASSIK010000000
VERSION     DASSIK010000050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2865)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2865)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2865
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_602897"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..552)
                     /locus_tag="VFI64_00945"
     CDS             complement(<1..552)
                     /locus_tag="VFI64_00945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241883.1"
                     /translation="MVAFAVYLVIFSPTGSVNANYVASNLSNSLGHSLNQRIIQSNGS
                     TYFVWTDTGDQSNDTGQIHFRTSNDSGNRFSETSILSNVTGDSNLPDISATNNNVYVT
                     WEDDSSDNSLIFFRGSHNNGRSFDKMVDISNGTIGSSLQNIASYKNSVYIVWVGSKRE
                     DPKNFEVFLRMSNDYGRNFGPIID"
     gene            complement(873..1781)
                     /locus_tag="VFI64_00950"
     CDS             complement(873..1781)
                     /locus_tag="VFI64_00950"
                     /inference="COORDINATES: protein motif:HMM:NF013324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005743 - mitochondrial inner membrane
                     [Evidence IEA];
                     GO_component: GO:0035632 - mitochondrial prohibitin
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prohibitin family protein"
                     /protein_id="HET7241884.1"
                     /translation="MSYGRMSRFPSYNIGKIAAVVITFIVIIVVMFESVVIVEAGHRG
                     VVLYLGAVENRVLPEGVHFIIPFAEQVIQMEVRTQKFQAEASAASNDLQEVQTVIALN
                     YMIDPTQANRVYQLLGVNYADRVISPTIQEAVKASVAKFNAEELVTKRETAKGVIAQA
                     IRNTLTSNNILTENVFITDFKFSESFAAQIEQKVVAFQKFLTEQNNLRAVRVIANQNV
                     VQAEAAARANIAKASGEAQAIELITGQLRSSPEYLQWQAINKWNGQLPYASGSGAVPF
                     FQLPSPQSQQANQTSQVLGAQGQISR"
     gene            complement(1870..2508)
                     /locus_tag="VFI64_00955"
     CDS             complement(1870..2508)
                     /locus_tag="VFI64_00955"
                     /inference="COORDINATES: protein motif:HMM:NF020893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VTT domain-containing protein"
                     /protein_id="HET7241885.1"
                     /translation="MMENPNFALIDLYSYIEYFEYGGIFAISLLAGIVTVIPIPVAPL
                     LALAALNEQMNPHLLVLSAVGGSVAAKALIFWCSYYGRNILSIKTRTRMLPLHKFINK
                     FGWIAVILTSATPIPDAPVNIHLGLAKYDFWKFIIAAFVGKLIAYELVVFAVIFMGRS
                     FLNDSISKINDAQLLMAGLAITISYAVIMYLTFRIDWTKVMGKRWSDPGKDV"
BASE COUNT          865 a          553 c          532 g          915 t
ORIGIN      
        1 gtcaattata ggtccaaagt ttctaccata atcattactc attcttagga atacttcaaa
       61 gttctttggg tcttctcgtt tgctgccaac ccaaacaatg tatacagagt tcttataaga
      121 ggcgatattt tgaagactcg agccaatagt tccgttactg atatctacca tcttgtcaaa
      181 gctcctcccg ttattgtgac tacccctgaa aaaaatgagt gaattgtcag aagaatcgtc
      241 ttcccatgtt acgtagacat tattgttagt tgccgagata tctggaagat tcgagtcccc
      301 cgtgacattg ctcaaaattg aggtttcact aaatctattt ccactatcgt tactagttct
      361 aaagtgtatc tgccccgtat cattggactg gtcgcctgta tcagtccaaa caaaataagt
      421 agatccattc gattgtatta ttctttgatt caacgagtgt ccaaggctat tactcaaatt
      481 ggaagctacg taattggcgt tgacagaacc agttggcgaa aaaataacaa gatagaccgc
      541 aaaagcaacc aaggagaaag tggctaattt actgggactt ggccaaatac tgaattgctg
      601 atgcatgaat aagaagacat cctattagtc aaaattaagt ttttgacatc ttgttggtat
      661 atactagcat accgaacatc cctagaataa atgaattgga attatctcct attgaattaa
      721 tttgtaagat gattgagcaa tttgtctcat tgtataggca agtcattatt taaaagcata
      781 atttaccata acaaattcgt taactaccag cagatatagg taaaaaaagg cgttgaagtt
      841 tgcgatccgt ttgtttcggt acgtgtagtt tcctatctgc taatttggcc ttgagctcca
      901 agtacttgac tcgtttggtt tgcttgttga gattgtggcg atggaagctg gaagaaagga
      961 accgcgccac ttccagaggc atacggtaac tgaccattcc atttgttaat ggcctgccat
     1021 tgtagatatt cgggacttga tcttaattgc cccgtgatta attctatggc ttgagcttct
     1081 ccactggcct ttgcaatatt tgctctagct gccgcttcag cctggactac attctggtta
     1141 gcaataactc gtactgccct cagattgttc tgttcggtaa gaaatttttg aaatgctact
     1201 actttctgtt ctatctgtgc cgcaaaggat tctgaaaact tgaaatcggt gatgaataca
     1261 ttttcagtta ggatattgtt tgaagtgagg gtgtttctaa tcgcctgagc aataacaccc
     1321 tttgcagttt ctctctttgt cacgagttcc tctgcattaa atttagctac actggctttg
     1381 acagcttctt gtatagtagg tgaaatgaca cgatcagcat agtttacacc taataactga
     1441 taaaccctat tggcctgcgt gggatcaatc atatagttta atgctataac tgtttgaacc
     1501 tcctgtaaat cgttggacgc agctgatgct tcggcttgga acttctgagt tcgaacttcc
     1561 atctgtatta cttgctcggc aaatggaatg atgaaatgta ctccttctgg aagtacgcga
     1621 ttttctactg caccaaggta aagaacgaca cctcgatgtc ctgcctcaac tattacaact
     1681 gattcaaaca tcacgacgat aataacgata aatgttatta caaccgcagc aattttacca
     1741 atattataac ttggaaacct tgacattctg ccataagaca ttttactttg aggatgttaa
     1801 agcgagttgc ctatatatct ttacgcgttt gttctgcgat attggtattt taactctatt
     1861 tcttacaagt tatacatcct ttccagggtc agaccatctt tttcccatga cctttgtcca
     1921 atctattcta aatgtcaaat acattatgac tgcataagat attgtgatag ccaatcctgc
     1981 cataagtaat tgcgcatcgt taatctttga aatactatca tttagaaaag atcgtcccat
     2041 aaatattacg gcaaagacta ctaattcgta tgctattagt tttccaacaa aggccgcaat
     2101 aataaatttc caaaaatcat attttgcgag gcctaaatgt atatttacag gagcatcagg
     2161 aataggagtt gccgatgtta atatgactgc aatccaacca aatttattga tgaatttatg
     2221 tagcggtaac atccttgttc tagtttttat gcttaatatg ttacgtccgt aataactaca
     2281 ccaaaaaatt agtgcttttg cagcgactga acctccgaca gcagacaaca caagcaggtg
     2341 tggattcatt tgctcattta gagccgctaa agctaacaac ggtgcgactg gaattggaat
     2401 tactgttacg attccagcta ggagactgat cgcaaaaatt cctccgtatt cgaaatattc
     2461 tatataagaa tagagatcta ttaacgcaaa attagggttt tccatcatca aaatagctta
     2521 taatagttat cccggacagg aatattaatg tctttaatcg tggtgagcct gccatttttc
     2581 aatattatta attcggagag gttagagacg gcaaagaagg tctataatct ggcacctttc
     2641 tgatatataa aatattaaag gcaactttca ttgaaaaaga gttattacca tcatcatgtt
     2701 actattcatg agtacctgct taaacattat tgactgtcat gttggggaaa ataaggaaac
     2761 gagtggaact aatatcgctt caaattaagt ctcatgttca tgtaaaagat aacaatagag
     2821 tcgaaaggaa ggaagctggg cgtcctcacg ttttagaaaa tcctt
//
LOCUS       DASSIK010000051         5684 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_699022, whole genome shotgun sequence.
ACCESSION   DASSIK010000051 DASSIK010000000
VERSION     DASSIK010000051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5684)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5684)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5684
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_699022"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..407
                     /locus_tag="VFI64_00960"
     CDS             <1..407
                     /locus_tag="VFI64_00960"
                     /inference="COORDINATES: protein motif:HMM:NF012800.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241886.1"
                     /translation="HSDDGLDELSNTSESTVIDIKKSGSRQYRFSPKSVNIHLATLRD
                     LQASSMEDSVKYTMQVIYGVASSAKEDIVILNSSLALMVGDKVDTIEEGIEMARIAVR
                     SGAPKAKLRELVDLCGNKDKLEQLEKVYNLND"
     gene            complement(638..877)
                     /locus_tag="VFI64_00965"
     CDS             complement(638..877)
                     /locus_tag="VFI64_00965"
                     /inference="COORDINATES: protein motif:HMM:NF039193.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5679 domain-containing protein"
                     /protein_id="HET7241887.1"
                     /translation="MATEGYCVKCKAKRKMDDEEQMIMKNGRPATKGTCSVCGTKMFK
                     IGGGPSSSTSKPAKKPAKKPAKKPAKSKSSKGKRR"
     gene            1080..1931
                     /locus_tag="VFI64_00970"
     CDS             1080..1931
                     /locus_tag="VFI64_00970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241888.1"
                     /translation="MTATIPHNNSPNTGNQWADLVANKRQFAKELREITDKIVEADNT
                     ISDYEQNIKTKKNETKDFLHKIILFKEDLRNFNSELLAVSDKISQSKGFLSVVEKRLP
                     KGDEAELIENMSKLKEKIDSPDFQSKNDMLDQYRKASMNLEAVKAVRTVREQIRKLGD
                     DSKNLSNKIMKIEAEIISHEARISQNQVAIEKILSSKNSIQEKRETLMTEYNNVLSSL
                     DGVNKKLDLLATDRKKFSAAKQGGYYSSRDEYESSMIEFKQRAERKMKAGEKLTLDEL
                     RIIFQEN"
     gene            complement(2013..2780)
                     /locus_tag="VFI64_00975"
     CDS             complement(2013..2780)
                     /locus_tag="VFI64_00975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenine-N1)-methyltransferase"
                     /protein_id="HET7241889.1"
                     /translation="MKIAEGQYVLVFYQRDKTWLVKGVSEHKLHTHVGIVDFSKIIGL
                     EYGSKYITNKEKTVYLLKPTVYDFILKSDRKTQIIYPKDLGYIAIRTGLKNGSKVIEI
                     GTGSAALTTFFASIVKPDGHIFTYDVNPEFMKIARRNLEKADLQQYVTMSQHDLHEGL
                     EERDADIAVIDLGDPWNVLEIVYNSIKPSASLVAICPTINQIEKTAIQMRKVGFVDIE
                     ATEILLRNIEAREGMTRPSMRMIGHTTYLIFGRKIGL"
     gene            2881..3573
                     /locus_tag="VFI64_00980"
     CDS             2881..3573
                     /locus_tag="VFI64_00980"
                     /EC_number="6.3.1.14"
                     /inference="COORDINATES: protein motif:HMM:TIGR00290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017178 - diphthine-ammonia ligase
                     activity [Evidence IEA];
                     GO_process: GO:0018193 - peptidyl-amino acid modification
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diphthine--ammonia ligase"
                     /protein_id="HET7241890.1"
                     /translation="MRIAALFSGGKDSTYSIYLMKKLGHDVVSLLTIIPSFCDSMLFH
                     YPNIRMSPYLAEAMAMPLHQFNSDQSSTDAELKVLSNALKFMRSEYGIDGIVHGGISS
                     YFQKNVFEKSCQKFGLSVFSPVWHMDPKSYMHELLSANFSIVITSVSCLGLDSVWLGC
                     RLDHDKVNNLEKLSSKYGFNLNFEGGEAETIVTDCPLYTKKFVITDSAVTWEGERGIF
                     EILDFELITKKC"
     gene            3567..4931
                     /locus_tag="VFI64_00985"
     CDS             3567..4931
                     /locus_tag="VFI64_00985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006614 - SRP-dependent cotranslational
                     protein targeting to membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle receptor subunit
                     alpha"
                     /protein_id="HET7241891.1"
                     /translation="MLENLRSGLRSALKKMVGASDVNEELIDALCKDVQRALLQSDVN
                     VRLVIDITKRIKDRALNEQPPKGLSRKDHIVSILYSELVRLLGYSQEERDSIPKPGKS
                     EDVTLPISAGINVFLMLGIQGSGKTTVTSKLARWLTKHGYHVGVIGTDTWRPGALTQL
                     KMNCVKINVDVFGDESSKDPAKIVKDGLEYFVKTGVDIVIIDTAGRHKDEFGLLKEMD
                     SMYKISNPNLVLLVIDGTIGQQAFNQAKTFNETTPVGGIIITKLDGTAKGGGALAASA
                     ATGAKIFFIGNGERIDDLEQFSPTRFVGRLLGMGDIKALLDMARDLEIRADENQSKRV
                     LSGKMTIEDFYAQMENVGKMGFRNMLDSLPGLSGIVKDDQLDVLQNKMEKWRYMIQSM
                     TKEEKNNPDIIHDARRKRIARGCGVMEHDVKDLVKNFNNSKTMMKQSKGRQMHGMLRR
                     LGIG"
     gene            4924..>5684
                     /locus_tag="VFI64_00990"
     CDS             4924..>5684
                     /locus_tag="VFI64_00990"
                     /inference="COORDINATES: protein motif:HMM:NF044739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241892.1"
                     /translation="MVRVMMQLSERLIKSFVVCNRCLIRQTGKVISSDAVGGESKCCY
                     ICKGLWERTESITRAVKSTGNKHDFNTFLIGLTIPTSMCEREDQLRSMYKIRGRETIK
                     TTFTRAIRQRFIELSGKYLDLLHPDIIIIIYIGDDDNGEFRLSVRSKPLTLRGVYKKN
                     SRQIFLQCIGPIPCSRDNPCSIEDILRWKLLSETGAESVSFSWFGREDKESLVLGKGR
                     PFYATLKNPRRRYLKHDLRFESNDIRVRIRKEPAF"
BASE COUNT         1872 a          979 c         1164 g         1669 t
ORIGIN      
        1 ttcattctga cgatgggctc gatgaactat caaatacatc tgaaagtaca gtaattgata
       61 ttaaaaaatc tggatccaga caatatcgtt ttagtccaaa atcagttaac atacatttag
      121 caacgctaag ggaccttcaa gcatcatcaa tggaggattc agtcaaatac acaatgcaag
      181 tcatttacgg tgttgccagc agtgcaaagg aagatattgt aatactaaat tcgtctctgg
      241 ctcttatggt tggggacaaa gtcgatacca ttgaagaagg aattgaaatg gcgagaattg
      301 ctgttagatc cggtgcccct aaagcaaagt taagggaatt ggttgatctc tgtggcaata
      361 aagacaaact agagcaattg gagaaagttt ataatctgaa tgattgaaaa cttgtcacaa
      421 aaattctttg attgattaga cttgctttat ctgatgaaat tctaagtaaa tttagtcgat
      481 gtcaatcagg accacgataa taaattaaaa cacaaatata tcacaaacta aaattcaaac
      541 gaattaccct tctaattgct tccaaaataa aaaaatggta tttgacggaa cttgttgtat
      601 gtggttagat gaataagaaa ttcttgctta tcctagacta ccttctcttt cctttagatg
      661 atttggattt tgcaggtttc tttgcaggtt tctttgcagg tttctttgca ggtttagatg
      721 tcgaactact tggtccgcca ccaattttga acatctttgt tccacaaaca ctacaagtac
      781 cctttgtagc aggccttcca tttttcatta tcatttgttc ttcgtcatcc atcttccgtt
      841 ttgctttaca ctttacacag taaccttcag tcgccaacac aattatccaa actgtgcttg
      901 catataagaa tagctcttgc tacttagttc ctaattataa ttagataatt caatactata
      961 atgatactgg aatcacaaat tgcaactttt taagcaggcc tagaaattta ctttagtgat
     1021 ttttattttt gttccgtaag aggttatact tttattatat gttgatggtt atgctatgat
     1081 tgacagcgac aatccctcac aacaatagtc ctaatactgg gaatcaatgg gcagatctag
     1141 ttgcaaataa gcgtcaattt gcgaaggaac tcagagaaat aacagacaaa atagtagagg
     1201 cagacaatac aatttcagat tatgaacaaa atattaagac aaaaaagaac gagaccaaag
     1261 acttcctgca taaaataatt ctgtttaaag aagatttgag gaatttcaat tcagagctgt
     1321 tagctgtcag tgataagatt tcccaatcaa aaggattttt gagtgtcgtc gaaaaaaggt
     1381 tacctaaagg tgatgaagca gagttaatag aaaatatgag taaattaaaa gaaaaaattg
     1441 acagtccgga tttccaatcc aaaaacgaca tgctcgatca gtatagaaaa gcgtctatga
     1501 atttggaagc tgttaaagca gtaaggaccg ttagggagca gataagaaaa cttggagatg
     1561 attcaaaaaa tttgagtaac aaaataatga agattgaggc agagatcatc tcgcatgaag
     1621 caagaatttc ccaaaaccag gtagcgatag aaaaaatatt atcttccaaa aattcaattc
     1681 aagaaaagcg agaaaccttg atgactgaat acaataatgt tcttagttct ctagacggtg
     1741 tcaacaaaaa gttagatttg ctggcaactg acaggaaaaa attttcagcc gcaaagcaag
     1801 gtggttatta ttcctcacgt gatgaatatg agtcatcaat gattgaattc aaacagagag
     1861 cagagcgaaa aatgaaggca ggtgaaaaat tgacattaga tgagctcaga ataatatttc
     1921 aagaaaatta atcatagtgc gattaaccaa tatgatcgag agtattcttt gcatacggca
     1981 aatcattagt tcatcaatag acaatatgtt aatcaaagcc ctattttgcg gccaaagatt
     2041 agataagtag tatgacctat cattcgcata gacggtcgtg tcatcccctc tcttgcctca
     2101 atattcctca ataagatctc tgtagcttcg atatcaacaa atcctacttt tctcatttgg
     2161 attgcagttt tctcaatctg atttatcgtc gggcaaatgg ccacaagcga agcgctaggc
     2221 tttatcgagt tatagacgat ctccaataca ttccatgggt cccctagatc gataaccgca
     2281 atatcagcat cgcgctcttc tagtccttcg tgcagatcgt gctgactcat ggtcacatat
     2341 tgttgaagat ctgccttctc aagatttctc cttgcaattt tcataaactc tgggttgacg
     2401 tcatatgtaa aaatatggcc atctggcttc acaatgctag caaaaaatgt tgtgagtgcc
     2461 gcgctacccg tacctatctc tattaccttt gatccattct ttaaacctgt cctaatcgca
     2521 atatagccaa gatcttttgg gtagataatc tgtgtcttcc tgtcagattt taaaataaag
     2581 tcgtacacag ttggttttag gagatatact gtcttttcct tgttggtgat gtatttagat
     2641 ccgtactcca gtccaatgat ttttgaaaaa tcgacgatcc caacgtgggt atgaagttta
     2701 tgttcactga cacctttcac taaccatgtc ttgtctcgtt gatagaagac aagtacatac
     2761 tggccttccg caattttcat ttatctctga aagccgtact ggtgataaaa aacccttgca
     2821 atacactcct tcaaatggaa tttagattta ttaattaaaa gatcaactta aaacgatatt
     2881 gtgaggattg cggccctttt ttcaggggga aaagatagta cctattcaat ttatctgatg
     2941 aaaaaattag gacacgatgt agtatctctt cttaccatca ttcccagctt ttgtgatagc
     3001 atgttattcc actaccctaa tatcagaatg agcccttacc tagcggaagc tatggcaatg
     3061 ccgcttcatc agttcaattc tgatcaatct tcaaccgatg cagaattaaa agtgctctct
     3121 aatgctttga agtttatgag atcggaatat ggaattgatg gcattgtaca cggaggcata
     3181 tcaagctatt tccaaaagaa cgtgtttgaa aaatcctgcc aaaaatttgg gctttcagtt
     3241 ttttcacctg tgtggcatat ggaccccaaa tcgtatatgc atgagctgct ctccgcgaac
     3301 tttagtatag taataactag tgtatcgtgc ctaggtttag attctgtatg gcttggttgc
     3361 cgcttggacc atgataaagt gaataatttg gaaaagttat catcgaaata tggattcaat
     3421 ctgaattttg aaggaggcga agcagaaact attgtgaccg attgtcctct ttatacaaaa
     3481 aaatttgtta ttactgattc tgcggtcacg tgggagggtg aacggggaat atttgaaata
     3541 ctggactttg aattaataac taagaaatgt tagaaaatct acgatctggt ctccgttctg
     3601 cgctcaagaa gatggtcggg gcctctgatg ttaacgaaga actaattgat gcattatgca
     3661 aagatgttca gagggcactt ttgcaatctg atgtcaatgt aagattagtg atagacataa
     3721 ccaaacgaat taaagatcgt gccttgaacg aacaacctcc taagggacta tctagaaaag
     3781 atcacatagt ttcgatcctg tactccgaac ttgtcaggtt attgggttac tctcaagaag
     3841 aaagggattc aattcctaaa cccggaaaat cagaggatgt gaccttacca atttctgcag
     3901 ggattaatgt atttttaatg cttgggatcc agggaagtgg aaagacaact gtaacttcaa
     3961 aattggcgag atggttaact aagcatggat atcatgttgg agtaattgga acagatacat
     4021 ggagaccagg agcacttacg caactcaaga tgaactgcgt taagatcaat gtggatgtgt
     4081 ttggagacga atcaagtaaa gatcccgcca aaatagtcaa ggatggactg gaatattttg
     4141 tgaaaacagg cgtcgatatt gtaataatcg atactgcggg tagacataaa gatgaatttg
     4201 gattattgaa ggaaatggat agtatgtaca agatttcaaa tcccaatcta gtgttgcttg
     4261 ttattgatgg tactattggt caacaggcat ttaatcaagc taaaacattt aatgaaacaa
     4321 cacctgtggg aggcatcatt atcacaaaac ttgatggaac tgcaaaaggt ggcggagcgc
     4381 tcgccgcttc tgcagctacc ggggccaaga tcttttttat aggtaacggt gagaggattg
     4441 acgatctgga acagttcagt ccgacacgtt ttgtagggag acttcttgga atgggtgata
     4501 tcaaagcgct gttagatatg gctcgagatc tagaaatacg tgcggacgaa aatcaatcaa
     4561 agagggtttt aagcggcaaa atgactattg aggattttta cgcccaaatg gaaaatgtag
     4621 gcaagatggg attcagaaat atgctggata gtcttccggg attatcaggg atagtaaaag
     4681 atgatcagtt agacgtactt caaaacaaga tggaaaaatg gaggtatatg atacaatcaa
     4741 tgacgaaaga ggaaaagaac aatcccgaca ttatccatga tgctaggaga aaaagaatcg
     4801 caagaggatg tggagtaatg gagcatgatg ttaaagatct ggttaaaaat ttcaataatt
     4861 ccaagacaat gatgaagcaa tcaaagggaa gacaaatgca tggaatgctc agaagactag
     4921 gcattggtta gagtcatgat gcaactttct gaacgtttga tcaaatcttt tgtggtttgt
     4981 aacaggtgtt tgatcaggca gacgggtaag gttatttcat cagacgctgt tggaggtgaa
     5041 agtaaatgtt gctacatttg caaaggattg tgggaaagga cggagtctat tacccgagca
     5101 gtaaaatcta caggcaataa acatgatttt aacacctttc ttatcggact gacaattccc
     5161 acttcaatgt gcgagagaga agatcaacta agatcgatgt ataagatcag aggaagagaa
     5221 actataaaaa ccacatttac acgagcgatc agacagaggt tcattgaact tagtggtaaa
     5281 tatttagacc ttcttcatcc agatataatt attattattt acatcggcga tgatgataac
     5341 ggtgagtttc ggctatctgt gagatccaaa cctttgacac taagaggtgt ttacaaaaag
     5401 aatagccgtc agatattcct ccaatgcata gggcctattc catgctcaag agacaatcct
     5461 tgcagtattg aagatatttt gcgatggaag ttactatctg aaaccggggc tgagtctgtt
     5521 tctttttcat ggtttggaag agaagataaa gagagtttag ttttaggaaa gggaagacca
     5581 ttttatgcta ccctgaaaaa tcccagaaga aggtatctga agcatgatct tcgttttgaa
     5641 tcaaacgata ttcgtgttag gatccgcaaa gagcctgctt tttt
//
LOCUS       DASSIK010000052         2497 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_804396, whole genome shotgun sequence.
ACCESSION   DASSIK010000052 DASSIK010000000
VERSION     DASSIK010000052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2497)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2497)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2497
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_804396"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            412..1020
                     /locus_tag="VFI64_00995"
     CDS             412..1020
                     /locus_tag="VFI64_00995"
                     /inference="COORDINATES: protein motif:HMM:NF012464.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HET7241893.1"
                     /translation="MLYAFGYLRVSTEEQTILNQRIAIKKWASDNDYEILEFFEDASV
                     SGKVAAINRPAFREMLEIVRNEQVDAVIVYELSRVGRTFWETLDAIKAIEQYAPLISC
                     SAKDVFLQTTDPSIRKLLIGILTWVSEREREILVQRTKDGMIRAKISGKMIGRPKKFL
                     DKDSLIKLLSQNMPKRKIAENLGMSKATLYKGIRRLSLSTEL"
     gene            complement(1015..2361)
                     /gene="bioA"
                     /locus_tag="VFI64_01000"
     CDS             complement(1015..2361)
                     /gene="bioA"
                     /locus_tag="VFI64_01000"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: protein motif:HMM:TIGR00508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004015 -
                     adenosylmethionine-8-amino-7-oxononanoate transaminase
                     activity [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HET7241894.1"
                     /translation="MLKSTHDKKYVWHPYTQMKEWTNARAPVITSGRGFYLIDENNEK
                     YFDGISNMWCNVWGHNRNEIINAMIRQLRDLPHSSLFGLAGSSSINLAQQLIKMAKGM
                     DKVFYTDNGSTAIEAAMKMAVQFWRNKGRGEKRSFISLKNGYHGDTIGCMSIGYVDGF
                     FSPYKSILMKNIFRIPSPTIRNWKFKGGKNDLTADECIGIAEKVIKKNASVTAAFVME
                     SGAQLAGGVKIYPEGFQKQISDLCKKHEILFILDEIATGFGRLGNMTEYSAQGSSPDI
                     VCYAKALTAGYFPLAVTLTTNNIFSAFLGKYNDRKQFYHGHTFTGHSMGCAAATANLI
                     LYERYDLISKIRKNMRHLEKLLEDLIEIDIVTDVRHKGLLAAIELRKNNKDIMTVCKK
                     PIGQFIAEESLKRGMYLRSLENIMLVIPPLAIGRNDLKRIIDVYRSVIRKIKKQIS"
BASE COUNT          754 a          476 c          460 g          807 t
ORIGIN      
        1 ttctttgata cttccagttt ttttaatcgt ggaaagtgca agaaataatg caaattactg
       61 cattttaagt agtcttttag agtcaaaatt aagtaaatcc tgttagatgg aagcaccttc
      121 atctgagaac tgtttctgaa tggtcttgaa aatagcatgt aaattcaaaa gcgagcctat
      181 gttgtccaat gctagtagga gaactaggca atatgcgaat atcgtcaaat cgactgccca
      241 ctacaatagt ctccaaaacg acccttttct aggctatctg aatatgagta ccattagtat
      301 accaataaat acagtaaaat ttgggaataa aaacagcata ccttttttag actgtataaa
      361 ttttttgacc atcacataat tattctgata ccgactagat ttctaatcta tatgttatat
      421 gcatttggat accttcgggt cagtaccgaa gaacagacaa tattaaatca aagaattgcc
      481 atcaagaagt gggcatcaga taatgactat gaaatcttag aattctttga agatgcgtct
      541 gtaagcggaa aggttgcagc aattaacaga ccggccttca gggaaatgct cgaaatagtc
      601 aggaatgagc aagtcgatgc tgttatagtc tatgaattgt caagggttgg aaggactttt
      661 tgggaaacac tagatgcgat caaagcgatc gaacaatatg caccacttat ctcttgttct
      721 gcaaaagatg tgtttttgca aactaccgat cctagtatta gaaaactctt gataggcatc
      781 cttacatggg tatctgaaag ggaaagggag attttggtcc aacgtactaa agacggcatg
      841 ataagagcaa agatatctgg gaaaatgatt ggtaggccga agaaattcct ggacaaagat
      901 tcgcttataa aacttttgtc tcaaaatatg ccaaagagga aaatagccga aaatctcggg
      961 atgtccaaag caactttgta taagggaatt cgcagattgt ctttgagtac agaactatga
     1021 tatttgtttc tttatttttc ggatgacaga tctatacaca tcaataatgc gtttaagatc
     1081 gttcctgcct atcgccaaag gaggtattac caacatgata ttttccaatg atctcaggta
     1141 catcccccgt tttagggact cttctgctat gaactgacca ataggctttt tgcagactgt
     1201 cattatgtct ttattgtttt tcctcaattc aattgcagca agaagtccct tgtgtctaac
     1261 atcagtgact atatcaattt ctatcagatc ttctagaagt ttttcaagat gtcgcatatt
     1321 ttttcttatc ttactaataa ggtcatatcg ttcatagaga atcaaatttg ccgtagccgc
     1381 agcgcaaccc attgaatgtc ccgtgaatgt atgtccatga taaaattgct ttctgtcatt
     1441 gtactttcca aggaatgcac tgaatatatt attagttgtc agtgttaccg ccaatgggaa
     1501 atatcctgca gtgagtgcct ttgcataaca aacaatgtct ggagaagaac cctgtgcact
     1561 atattcagtc atgttaccga gtcttccaaa tcccgttgca atttcgtcta ggataaataa
     1621 gatttcatgt tttttacaca aatcgcttat ctgcttctga aaaccttctg ggtagatttt
     1681 gactccacca gcgagttgcg ctccgctttc catcacaaat gctgccgtaa cagaagcatt
     1741 tttcttgata actttttctg ctatgcctat gcattcatct gctgttaaat cattttttcc
     1801 tcctttaaat ttccagtttc tgattgtggg cgagggaatc cgaaatatgt tcttcattaa
     1861 aatagatttg tagggagaaa agaacccatc tacataacca atagacatgc atccaatcgt
     1921 atcgccgtga tatccattct tcaatgatat gaaggatctt ttttcgcctc ttcctttgtt
     1981 ccgccaaaac tgtacagcca ttttcatagc cgcttctatg gcagtagaac cattatcagt
     2041 gtaaaagact ttatccatac ctttggccat tttgattagt tgttgtgcaa gattaatgga
     2101 agaacttccc gctaaaccga atagtgatga atgcggaagg tccctaagtt gccttatcat
     2161 tgcgtttatg atctcatttc tgttatgacc ccacacgtta caccacatat tgctaatccc
     2221 atcaaaatac ttctcattgt tctcatcaat aaggtaaaaa ccccttccag atgtaataac
     2281 aggggctcga gcatttgtcc attctttcat ctgtgtgtat gggtgccaaa cgtacttttt
     2341 gtcatgagtg ctttttagca tgcaacatta tgatcaggta ctattattag tatgtagaac
     2401 cacggtcagc atacaaatta aatttctaag ttcatgaagt gggatcccag atttaagtcg
     2461 tttatgaatg gaaattgggt aattatttta gttgatt
//
LOCUS       DASSIK010000053         4012 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_804578, whole genome shotgun sequence.
ACCESSION   DASSIK010000053 DASSIK010000000
VERSION     DASSIK010000053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4012)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4012)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4012
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_804578"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            271..864
                     /gene="tmk"
                     /locus_tag="VFI64_01005"
     CDS             271..864
                     /gene="tmk"
                     /locus_tag="VFI64_01005"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR00041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004798 - thymidylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HET7241895.1"
                     /translation="MPKGRIVVIEGMDKAGKTTQSRVLATALRNKGRLCASLDFPDYS
                     TPIGREIKSFLDGKRDYPDETKLMLLSANRWERKETIDRMLSNGTILVMNRYYHSNLA
                     YGVSKNLELDWLITLDRGLPKEDLCIVLEIRPTISESRSKHAGDLFENDKDLLKNVYK
                     NYRKLAKLFNWKIINGERSKEEVSRDILNMVLKFVKI"
     gene            893..2146
                     /locus_tag="VFI64_01010"
     CDS             893..2146
                     /locus_tag="VFI64_01010"
                     /inference="COORDINATES: protein motif:HMM:NF039904.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HET7241896.1"
                     /translation="MKYVGEITDPVHKYIQFTGLERDLIDTPTFQRLRRIKQLAGAHL
                     VYPSAQHSRFEHSLGAMHVAGLAGEHLLSLNMLPNPDCIQELRVSSLLHDVGHGPFSH
                     LSEEVIKIKTDKDHETIGGEIIRQTEIDDILNYYGYSSKRISELSSGQSSSKFMNEIM
                     VGSLSADLMDYLPRDSLFTGAEYGRIDYNRIINSFRVLDGSRIGLHRSALYSFESMLI
                     SRYEMFKAVYFHKTVRSAEVMLLHSILLAYDSINFNVASLDNYLSLTDEIILIRILTS
                     KSNPLARQLAGNYLERKLLKCVYERFIQKKERLRDKLNWNKITDVSSKIAEIAKVKSD
                     RVFIDVSGISSVPLAPNKQEMRSILLVGEEEALKTPVSQLPLINSISGHLDMLRVYTD
                     EENRKKVTIAARKVFGEEGSICDGF"
     gene            2136..2840
                     /gene="pyrH"
                     /locus_tag="VFI64_01015"
     CDS             2136..2840
                     /gene="pyrH"
                     /locus_tag="VFI64_01015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HET7241897.1"
                     /translation="MVSDMSNREKDMVVIKLSGSLFNLDTTVSTLKNYAELLLEVEHK
                     VRLIVVAGGGKIARHYINLARSLGSDESTLDMLGINVSRLNAMLLVTALGNGTYPQIP
                     ETLEEVATASQFNKIVITGGLYPGQSTNATSALICEKVKASRFINATDVAGIYDSDPN
                     KNSNARLYSDISVAQCMRLIGNEKSQAGTYDLMDIIALKVIERSRIPTVVTEANITTL
                     KDVILNISSIGTRITV"
     gene            complement(3104..3421)
                     /locus_tag="VFI64_01020"
     CDS             complement(3104..3421)
                     /locus_tag="VFI64_01020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241898.1"
                     /translation="MQYHKASHIGHERSRMAQMKLFDYTGFAMLTYTIKQGQNGFAPV
                     GDEMLLAKIVRENQAMLFLCDIDGYAKAQSKPLPVEKAKEIYLQMVNDGFAEYNGEIK
                     TVS"
BASE COUNT         1332 a          731 c          767 g         1182 t
ORIGIN      
        1 accataatac cattaatgtt tcgcaaatta gaaacatctg tctgcttacc tataccaatt
       61 tcttcagcct tagtaatttt cgtataaaat ctcataatag taccctgtaa ttatttttgg
      121 tagagaacaa attcctaatc tgcaaaaatg gagaatgatg tagtgtatct agatgatgta
      181 tatcttgtcg acaatgtttc taatatttgg gagggtggag atttcagttt caacatcttt
      241 ttatgtctgg caaataattg ataaaattaa ttgcctaaag gaaggattgt agttatagaa
      301 ggtatggata aggccggaaa aacgacacaa tccagagtcc ttgcaactgc acttagaaat
      361 aaaggaagat tatgtgcttc attagatttt cccgattatt ctacacctat cgggagagag
      421 ataaagtctt ttctcgacgg aaagcgtgac tatccagatg aaacaaaact tatgctactc
      481 tcagcaaata gatgggaaag aaaagagacc attgacagaa tgttatccaa tggaactatt
      541 ttggttatga acagatatta tcattcaaac ctcgcatatg gggtatcaaa gaatttggaa
      601 ttagattggc ttattaccct ggatagagga ctaccaaagg aagacctatg tatcgtgctt
      661 gaaattcgac ctaccatttc agaatcaaga tccaaacacg cgggagatct ttttgaaaac
      721 gataaagatc ttttaaagaa cgtttataaa aattatagaa aactcgccaa actttttaat
      781 tggaagatca taaatggcga aagatcaaag gaagaagtaa gtagggatat acttaacatg
      841 gtattgaaat ttgtcaagat ttaattgcgt catggggcca gaagtacatt cgatgaaata
      901 tgttggtgaa attaccgatc ctgttcataa atatattcaa tttacagggc tggaaaggga
      961 cctcatcgac actccgactt ttcagagatt aagacggata aagcaattgg cgggcgcaca
     1021 tcttgtttat ccttctgctc agcactctcg atttgaacat tcactaggtg caatgcacgt
     1081 tgcgggattg gcaggagaac atcttctgtc attaaatatg ttgcctaatc ctgactgtat
     1141 tcaagaattg cgtgtttcct cactcctgca tgacgtaggc catggtcctt tttctcattt
     1201 atctgaagag gtgatcaaga ttaaaactga taaagaccat gaaacaatag gcggggaaat
     1261 aatacgtcaa actgaaattg atgacatact aaactattat ggctattcgt cgaaacgcat
     1321 aagtgaactt tcatctggac agtccagttc aaagttcatg aacgagatca tggtcggaag
     1381 tctctctgca gacctgatgg actatctccc acgcgatagt ttatttactg gggcagagta
     1441 tggcagaatt gattataata gaatcataaa ttcgtttagg gttctagatg gatcaagaat
     1501 tggtctacat cgttctgcac tgtactcctt cgaatccatg ttaatatcgc ggtacgagat
     1561 gttcaaggcc gtatattttc acaagacggt tagatcagct gaagtcatgt tactccactc
     1621 aatcttgtta gcatacgatt ccattaattt caatgttgcc agcttagata attatctcag
     1681 tttaactgat gaaattattc tcataagaat tcttacctct aagagcaacc ctctggcaag
     1741 gcagttagca gggaattatc tggagagaaa attactaaaa tgcgtttacg agaggtttat
     1801 ccaaaagaag gagcggctga gggataaatt gaactggaac aaaataactg acgtaagttc
     1861 aaaaatagcg gaaattgcga aagtaaaaag cgatcgtgtg tttatagatg tgtcgggtat
     1921 ttcttcagtt ccactcgctc cgaacaaaca ggaaatgagg tcgatattgt tagttgggga
     1981 agaggaagca ttaaaaacac cagtatcaca attgccactg attaattcca tatcgggtca
     2041 tttggatatg cttagagtct atactgatga agagaacaga aagaaggtaa caattgctgc
     2101 cagaaaggta tttggagaag aaggatcaat ttgtgatggt ttctgacatg tcaaatcgcg
     2161 aaaaggatat ggtcgtaata aaattaagcg ggagtttatt caatctcgac actacagtat
     2221 ccactctcaa aaattacgct gaacttctat tagaggtaga acataaagtt cgactcatag
     2281 tcgttgcagg aggtgggaaa attgctcgac attacataaa tttggcgaga tccctgggct
     2341 cggatgagtc gacgttagat atgctgggaa taaatgtatc acgcctgaat gctatgctgc
     2401 tcgtaacagc attagggaat ggaacttatc ctcaaattcc tgaaacactg gaagaagttg
     2461 caacagcctc tcagtttaac aaaatagtga taacaggtgg cctctatcca ggccagagta
     2521 ccaatgcaac ctccgctctt atatgcgaaa aagtaaaagc aagtagattc atcaatgcta
     2581 ctgatgtcgc tggcatatat gactccgatc ctaataagaa ctccaatgct agactatatt
     2641 cggacatatc cgtagcacaa tgtatgcgat tgattggcaa tgaaaaaagt caagccggaa
     2701 cttatgatct tatggatatc atagcactaa aagtaataga acgatcaaga attcccacag
     2761 tagtcacgga agctaatata actacactca aagatgtcat tctaaacata tcttcgattg
     2821 gaacaagaat cacagtatga cactagaata agatttatgc tgagatattg gagtacagtc
     2881 acgtgattac attatcaaat attgatgcca attatgaaat tcgaatgcca catgcaaaaa
     2941 ggattccata tttgctttca tattggatct ttggtagatt gaatctatga tatgatgtta
     3001 accatcagat taaatatcct agatattcca atccaaccaa atctccggaa gaaaatatga
     3061 actctaataa caacaagact taaagaattc attttacata tgttcacgat acagtcttga
     3121 tttctccatt gtattcagca aatccgtcat tcaccatctg aagatatatc tcctttgcct
     3181 tctctactgg aagaggtttc gattgggcct tagcgtatcc atcaatatca cataggaata
     3241 acatcgcctg attttctctt acaatttttg ccaataacat ttcatcgccc actggtgcaa
     3301 atccattttg gccttgtttg atggtgtacg ttaacatggc aaaaccggtg taatcaaata
     3361 gcttcatctg agccattcta gacctttcgt gcccgatgtg tgatgcctta tgatattgca
     3421 cggagcaatt aattcctttg accgtctata agcctttcag gcattttgcc aaatgtgatc
     3481 ctcctaaata agaaatccat tgacgaaata gtcacccgat tcattgttga catttttacc
     3541 aaacagatgc aatggagaaa tcatacttta tctatttcca ttaacaggct tatgacattt
     3601 ccatcatatt catgcattcc ttgaaaataa tgaagcctat caattatcat ggaaggttat
     3661 tagagcccat catggagttt gataaaaaga ttcattttcg aattagagct ttgattgata
     3721 atgagtgatc tgcatatgcc aaaaacttcc attgttatgc tcaaaaccca tcactcaagt
     3781 ctatgacaag atataagagc aatcaatcga ccaatgtgta cttttcctaa ttattaacgc
     3841 tagtaaatta ctaactaaaa gaacactgct aaaaagccaa gaaaatgatg attcaattga
     3901 tttttcttag cctcggaaag gacattgcac gtcgagatag taaactcttg tctgggccca
     3961 gaaagctaat ttcattcaaa tatccaagtg atccgaattt tcagtcaaag at
//
LOCUS       DASSIK010000054         2486 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1002965, whole genome shotgun sequence.
ACCESSION   DASSIK010000054 DASSIK010000000
VERSION     DASSIK010000054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2486)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2486)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2486
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1002965"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..143)
                     /locus_tag="VFI64_01025"
     CDS             complement(<1..143)
                     /locus_tag="VFI64_01025"
                     /inference="COORDINATES: protein motif:HMM:NF012799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HET7241899.1"
                     /translation="MKLTCVGCGPGDPDLLTLKAVERIKDADTIFAPTSKLGKPSIAL
                     SIVR"
     gene            complement(332..919)
                     /gene="cbiT"
                     /locus_tag="VFI64_01030"
     CDS             complement(332..919)
                     /gene="cbiT"
                     /locus_tag="VFI64_01030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046025 - precorrin-6Y
                     C5,15-methyltransferase (decarboxylating) activity
                     [Evidence IEA];
                     GO_process: GO:0046140 - corrin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-6Y C5,15-methyltransferase
                     (decarboxylating) subunit CbiT"
                     /protein_id="HET7241900.1"
                     /translation="MKWDYLTPGIPDELFERREDVPITKEDIRALVISKLRLRDDFQV
                     IDVGCGSGSITVEICLQTKNGKVYAIDLNPEAIELTQRNLMKFGVKAELILSNAQDAL
                     PSLPLVDAIVIGGTNGEPEEIIKLCTQHLKSKGRIVIDTILIETVFKVLTAIKKEKLT
                     DMDITQVTISKSKTVSTGTMLTARNPVTIISATKN"
     gene            complement(976..1278)
                     /locus_tag="VFI64_01035"
     CDS             complement(976..1278)
                     /locus_tag="VFI64_01035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241901.1"
                     /translation="MKLSRLEQLDRIYYMRAILGIIAGVILGVALNPSNRGLALQFIV
                     LIGFIFYIISYIAAKKIGTRVKSEEKRKLATSGIFPFIFLLLMFMILVYTGLHGNR"
     gene            1357..>2486
                     /locus_tag="VFI64_01040"
     CDS             1357..>2486
                     /locus_tag="VFI64_01040"
                     /inference="COORDINATES: protein motif:HMM:NF017633.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NFACT family protein"
                     /protein_id="HET7241902.1"
                     /translation="MELSGLELRYLINEVKSKISSEYYVSDIIPVTQSALLFKLHHSR
                     EPDIMLMISTQGLWITNTRFKTIEENPMVNILTREIERSKIVTLEQMGSERIFIVKFK
                     RNDDTERILVVEIFGNGNMILCDAAMTILGLQRAIEVRHRTLRVGLKYVFPPKRGEDV
                     FNVSLEHLLTSKHTVQSDESNVAKWLGVCTSMPKKFVDEVIRRSSIQPTAPVNQLTDF
                     EMQSIYTNIMEVVSDVVTGKNHDPAILTDSSGNALDAFPIRIYDDKNPEIRKVSTFMD
                     AIDYVLGNQILKFAKSQKTMNLDKQMADMKHDLEQQEKAKEEVIIRANSLRNLAKDLM
                     ALSQQGFFNLEDTEFDTVLAKHHSRIIKEKGEQYLEVADQFIP"
BASE COUNT          761 a          477 c          494 g          754 t
ORIGIN      
        1 cgaactatag aaagggcaat actaggcttg ccgagtttag aagttggcgc gaagatagta
       61 tccgcatcct ttattcgctc gactgccttt agtgtaagga gatcagggtc tccaggacca
      121 catcccacac acgttaattt cattacccga tttcataatt aatgcgttat ttaaattcga
      181 ggatcttgat gctgaattca ccgcatacct tgcatacgat gaaatttata ttctagttca
      241 aattggtgat gagcaaaata ttatcaaagt gatataccta tgaatcgact cattatttga
      301 attattgtta atattatgat aataatattg gctagttttt tgttgcagat attatcgtta
      361 caggatttct tgcagttaac atcgttcctg tactcacggt cttagatttg cttatggtta
      421 cctgtgtaat gtccatatct gtcaatttct ccttttttat agctgttaat actttaaaga
      481 cggtttcgat caaaattgtg tcaatcacga tcctaccctt actctttaag tgctgagtac
      541 atagtttaat gatctcttca ggctctccat ttgtgcctcc gatgacaatt gcatcaacta
      601 gcggaagcga gggcagcgca tcttgagcat ttgagagtat cagctcggcc ttcaccccga
      661 atttcatcaa atttctctgc gttaattcta ttgcttctgg attaagatct attgcataca
      721 cttttccatt ctttgtttga agacatattt ccactgtaat gctgccacta ccacagccta
      781 cgtcgatcac ttgaaaatcg tctctaagtc ttaatttgct gataactaat gctcgaatat
      841 cttctttggt gatgggcaca tcttcacgtc tctcgaacaa ttcatcaggt attccgggtg
      901 ttaagtaatc ccatttcatt gtaagagact tggatgaata cggaaccaaa tatttttcta
      961 ttgtagattg gagtgctagc gattaccgtg taatccggtg taaactagaa tcatgaacat
     1021 cagcaataag aatatgaagg gaaatattcc actagtggca agtttacgct tttcttctga
     1081 ctttactcta gttccaatct tcttggctgc gatataagag atgatgtaaa agataaaccc
     1141 aatcaaaaca ataaattgta gagccaagcc tctgttagac ggattgagag caactcccag
     1201 tatgactcct gctataatac ctaagatagc tctcatgtag tatatcctat ctagctgttc
     1261 caatcggcta agcttcataa actgcaggtt taattccttc cgatccgaaa tcttactttt
     1321 cgttaattaa tatttatctt gtggcagaat cagaatatgg aattatcagg cttagaactt
     1381 cgatacctta taaatgaggt aaaatcaaaa atttcttcgg aatattatgt gagtgacatc
     1441 attccggtga cgcaatcggc tcttttattc aaattacacc attctcgcga acctgatata
     1501 atgctaatga tctctaccca aggcctctgg ataacgaata ccaggttcaa gacaatagag
     1561 gaaaatccga tggtgaacat tttaacccga gaaattgaac gaagcaagat tgtaacttta
     1621 gagcaaatgg ggagtgaacg aatattcatt gtgaagttca aaagaaacga tgacacagag
     1681 aggatacttg ttgtagagat atttgggaat ggcaatatga tactctgcga cgctgcaatg
     1741 acaatactag gtttacaacg ggccatcgaa gttaggcaca ggactctcag agttggttta
     1801 aaatatgtct ttccgccgaa acgcggtgag gatgttttca atgtgtcact ggagcatctc
     1861 ttaactagta aacatacagt ccagtctgac gagtctaatg tggccaagtg gctaggggtc
     1921 tgtacttcta tgccaaagaa gttcgtggat gaagtaatta gaaggtcaag tattcagcca
     1981 acagcaccag tgaatcaact gaccgatttt gagatgcagt ccatttacac aaatattatg
     2041 gaagttgtaa gcgatgtggt cacaggaaag aatcatgacc ctgctatatt gacggatagc
     2101 tctggaaacg ctctagacgc atttcccatt cgtatttatg acgacaaaaa tcctgagata
     2161 aggaaggttt ctactttcat ggatgcaatt gactatgttc tcggtaatca aattttgaaa
     2221 ttcgcaaaga gtcagaagac tatgaacttg gacaaacaaa tggcagatat gaagcacgat
     2281 ttggaacagc aagaaaaggc gaaggaagag gtaatcatac gtgcaaattc tctgagaaat
     2341 ctagccaagg atctaatggc tctgagccaa caaggttttt tcaacttgga ggatacagaa
     2401 tttgacacag tcctagcaaa acaccattcg cggattatta aggaaaaggg ggaacagtat
     2461 ttagaagtcg cagatcagtt catccc
//
LOCUS       DASSIK010000055         3187 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1298518, whole genome shotgun sequence.
ACCESSION   DASSIK010000055 DASSIK010000000
VERSION     DASSIK010000055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3187)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3187)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3187
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1298518"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..737)
                     /locus_tag="VFI64_01045"
     CDS             complement(<1..737)
                     /locus_tag="VFI64_01045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241903.1"
                     /translation="MYDHHGPESKKQSYFDTRSVRNSLIPVLIASVLLAYLLIILSPV
                     DKKALLIDIIKPTSAAISTVFSLVVVYRQKTDGIIGKAFTLLAAGMTLFLIGELISSY
                     NDIALGIENSLPSIAYVFWTIAYGPIFYFVFKMYYFLGASHSKTHQILICVVGAVFLT
                     YFITLTAQNAEFSTQRGIASFLISIAYPVLDVVLIVPSALILLNPVKGSLTSIPWIFL
                     AVLILGIGDCIFAYTFNVRAMEDLNWIS"
     gene            complement(730..1038)
                     /locus_tag="VFI64_01050"
     CDS             complement(730..1038)
                     /locus_tag="VFI64_01050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241904.1"
                     /translation="MHNWISTISTTSKRSNICARIAEDDATWWIRNGCTRALSSIELS
                     LCRELPQSTSILCAFDISKLTPKQLSTMRAIIGSHDYVIIEEPSFTVYRFGKPTFRNV
                     "
     gene            complement(1014..1661)
                     /locus_tag="VFI64_01055"
     CDS             complement(1014..1661)
                     /locus_tag="VFI64_01055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241905.1"
                     /translation="MNLKGGKNFQRLTALDDLDYVPLDSISDDILYRSIKESLEQVGK
                     AYSKAVIDHICRINRLSEREILTNCDLFEDSMYRLFGHGAVTIINKVKVLALRHSLME
                     HKSNLTIPEIVDPALTINDVLNEIRRIEALDFVDKMASHNHIALLYTHQDSLIKILSE
                     YFSPKDAPKALLSENPDNFSHLNFTSSISYKDLFGPITSPLKKMQFSNCITGSVP"
     gene            complement(1658..2134)
                     /locus_tag="VFI64_01060"
     CDS             complement(1658..2134)
                     /locus_tag="VFI64_01060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241906.1"
                     /translation="MNSVFDVLKTLSDTKALAIFNIIALSNVDRGFLLSHLNLSTRAC
                     HYRVSRLLRTGVISRKNGKYSVTSFGLLVHHAQNLIGLALNSYWKLSAIDSLESSHSI
                     PRHEYNKIVSNLLSDDKIKEILTRERETINIVDPRKSINSIPLNIQTSTRRPGQTN"
     gene            complement(2237..2392)
                     /locus_tag="VFI64_01065"
     CDS             complement(2237..2392)
                     /locus_tag="VFI64_01065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241907.1"
                     /translation="MNNPFGTEGAGGSWLADEFNFRSVFYVVLDSHFRIAFLLHIDRI
                     ITGPFYG"
BASE COUNT         1026 a          603 c          625 g          933 t
ORIGIN      
        1 gatatccaat tcaaatcttc cattgctcga acgttaaatg tatatgcaaa tatgcagtcg
       61 ccaataccca aaatcaaaac ggctaaaaat atccaaggga ttgatgtcaa cgagcctttt
      121 acgggattca acaggatcaa agcagacgga acaatcaaca ccacgtctaa tacagggtac
      181 gctatggaaa tcaaaaacga cgcaatacca cgttgagttg aaaattcagc attttgagcg
      241 gtcagagtga taaaatatgt gagaaatact gctcctacaa cgcatattaa tatttgatgg
      301 gttttcgagt gagacgcacc aagaaaataa tacattttaa aaacgaaata gaatatcgga
      361 ccatatgcta ttgtccaaaa gacatatgct atcgatggta aagaattttc aatacctagt
      421 gcaatatcgt tataactcga gattaattct ccaatcagga ataaggtcat tccggcagca
      481 agtaaagtga atgctttacc aattattccg tcagtctttt gtctgtaaac aactacaagt
      541 gagaaaaccg ttgatattgc agcagacgtt ggctttatga tgtcaattaa cagggctttc
      601 ttgtctacag gagataatat aatcaaaaga taggcaagca gaacagaggc aatcaatacg
      661 ggtatcagag aattgcgtac tgaccttgta tcaaaatagg attgcttttt tgattctggt
      721 ccgtgatggt catacatttc tgaatgttgg tttaccaaat ctgtaaacag taaaagatgg
      781 ttcttcgata atgacataat cgtgggatcc aattatagct ctcatggtgc tcaattgttt
      841 cggagtaagt ttagaaatat caaatgcaca taaaatagag gtactttgcg gtaattccct
      901 gcaaagcgac agctcaatag aactaagtgc tcgagtacaa ccgttcctta tccaccatgt
      961 tgcgtcatct tctgcaatcc gcgcgcagat attagacctt ttgctggtag tacttatggt
     1021 actgatccag ttatgcaatt tgaaaactgc atcttcttta aggggcttgt gatcggccca
     1081 aacaagtctt tataggaaat agaactagta aagttcagat gagaaaagtt atctggattt
     1141 tctgacagga gggccttcgg ggcgtcttta ggactgaaat attctgataa tatcttaatg
     1201 agagaatcct gatgagtgta taataacgct atatggttgt gagatgccat tttgtcaaca
     1261 aaatctaagg cttcaatccg ccggatctca ttcaatacat cattaattgt aagtgcaggg
     1321 tctactattt ccgggatagt gagatttgat ttgtgttcca ttagtgagtg tcgcagcgct
     1381 agtactttga ccttattgat aatagttact gccccatgtc cgaatagtcg gtacatcgaa
     1441 tcttcaaaca agtcacagtt agtcagaatt tccctttcag acaatcgatt aatacggcaa
     1501 atatgatcaa ttactgcttt agagtacgct ttgcccactt gctcaagaga ttcttttatc
     1561 gaacggtaaa ggatatcatc agatatagag tcaagaggaa cgtaatctag atcatctaga
     1621 gccgttaggc gctgaaaatt tttcccccct ttgagattca atttgtttgt ccgggcctcc
     1681 gtgtcgaagt ttgtatgttc aggggaatac tgtttattga cttcctggga tcgacaatat
     1741 tgattgtttc cctttcacgt gtcagtattt ccttgatctt atcatcactt aacaggttac
     1801 tcactatttt attatattcg tgtcgtggaa tactatgcga tgattcgagt gaatcgattg
     1861 cgctaagttt ccaataacta ttcagagcga gtcctatgag attttgagca tggtgaacta
     1921 acaatccaaa agaagtaaca gaatattttc catttttccg agatatgact ccagttctta
     1981 ataaacgaga aacacgataa tgacaggccc tggtggagag gttcagatga gagaggagaa
     2041 acccccgatc gacgtttgac aatgctatta tattaaaaat agcaagcgcc ttggtgtcag
     2101 aaagtgtttt cagtacatca aaaacggaat tcaagaaaaa tttaccacca ctagcaatag
     2161 tatccctata aggtatactt attgattctt agaaaatggt gtgtaatatt actctaacat
     2221 gccagaatca ctatttctat ccataaaatg gtcctgtaat tattctatcg atgtgaagaa
     2281 gaaaagctat cctaaaatga gaatcgagta caacgtaaaa tacacttcga aagttaaact
     2341 catcagcgag ccaagatcct cctgctcctt cggtcccgaa cggattattc aagcgcggag
     2401 gtgcttatta ttcaccaacc acggacactg gccagagtga tcctgttcat ggagtagcac
     2461 aaataatcga gcacttccgc acttggagtt taatagatgc cagcttcgtt taattccttt
     2521 tgcaaatgtg atccctgcgt ttgcagcgat ttgttcattc attctattca gactagcagt
     2581 tcagtatgaa ttcgttcttc ctcgtacgaa cgaaatttag ccgctcaaaa gccagttagc
     2641 gagcgaaggt gcggcgaaga atatcaatca ccttcataaa ccaacataca atctttcggt
     2701 cagaatgtag attgaattga taaactagat aattatgcta tacaatcaaa cttgatcgtg
     2761 ctcaaaccac aataagaaac tgacagttac gatgaggtaa gaaacacgac tggatcatat
     2821 tcatgataag aacaatgctt aacagaaact agacaactga ttatagtttg aagataggac
     2881 tagttgcaaa aagtacaact tttccaagta tcgtaaattt tataaatagt acaacattgg
     2941 cgacattaaa ccattattaa aaatgtggca cataatgtga ctatgacgag caagcgaaaa
     3001 gcaagcttgg agtcatcagt attcgagcgt gaggcaacag accgcatgga ctgccattcc
     3061 attaagactg aaatagaatg tccacactgt tttgacttaa tgattctcag ttcagatttc
     3121 gacagtttat cttatgtttg tgaagagtgt ggttttacgc tctacacaac taggctagca
     3181 acctaag
//
LOCUS       DASSIK010000056         3688 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_898524, whole genome shotgun sequence.
ACCESSION   DASSIK010000056 DASSIK010000000
VERSION     DASSIK010000056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3688)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3688)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3688
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_898524"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            405..593
                     /locus_tag="VFI64_01070"
     CDS             405..593
                     /locus_tag="VFI64_01070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241908.1"
                     /translation="MAKCPHCKKEFERDVDVRIVYPDNADAPGLRCAVFICPNEECGM
                     FLGATSIGYGHVQGVEEL"
     gene            complement(950..1735)
                     /locus_tag="VFI64_01075"
     CDS             complement(950..1735)
                     /locus_tag="VFI64_01075"
                     /inference="COORDINATES: protein motif:HMM:NF014670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="creatininase family protein"
                     /protein_id="HET7241909.1"
                     /translation="MTKNSPYFLESMNAIQIRKKVDENTVAVLVFGACENHGDHMPFG
                     SDFIFPLEIAERIAKMTENVIVLPAVPYGVSLHHNGFQMTLSLQSDTLVKIIIDILNS
                     LISNNINRILIINGHDGNIAPVEDAARSIKNTHPEVTICCLESWWTLVGQIRKDLFDI
                     WNGLGHGGEAETSAMLAVRPDLVDMNLAPSDTIPKLPTNVRIYWNFDELTSTGTTGSP
                     RNASIEKGKAVLETIESVLLSLMQEMDQNNWKYGINVNQDITK"
     gene            complement(2040..2777)
                     /gene="bluB"
                     /locus_tag="VFI64_01080"
     CDS             complement(2040..2777)
                     /gene="bluB"
                     /locus_tag="VFI64_01080"
                     /EC_number="1.13.11.79"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016722 - oxidoreductase activity, acting
                     on metal ions [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0032363 - FMN catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5,6-dimethylbenzimidazole synthase"
                     /protein_id="HET7241910.1"
                     /translation="MIYDMQMNDTYDSSFVDCERQGLYKAIYARRDVRSNFIDRDIPD
                     YILAQILRAAHHAPSVGYSQPWDFILIKDYANRLLVKNSFINEREKSISLLKGDKERQ
                     KLYLRLKLEGIVESAINICVTYDPTKFGPFVLGRTSVPETGVYSVCCAIQNLWLAARV
                     EGIGVGWVSILSTADLKKILSIPDHVLPVAYLCLGYVNEFSAKPDLENVGWLERMALK
                     DVIHYEKWKGLQNNRWNDLHNSFDDVR"
     gene            3480..3629
                     /locus_tag="VFI64_01085"
     CDS             3480..3629
                     /locus_tag="VFI64_01085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241911.1"
                     /translation="MNDTSDLAEWLAGGQFDPEHEFNSKRRELDKLDHRVNKIKTVDV
                     NAEYR"
BASE COUNT         1196 a          680 c          644 g         1168 t
ORIGIN      
        1 gatgtaaaat ttgttggaac tgagatagat gaacaatatg taagaattgc tagagataat
       61 gtaattgtca gccgtcagag cgcaaaagaa atgtaaaata atacgtttca agaatgtaat
      121 ccgaaccaaa accctatgat catcctaact tgaaacaaag ctatcttagg gttactctgc
      181 ccccaccaga tattcatata gtgatgtttt aattgcaaga aaaagagaga ccaaaattct
      241 ttaggtccaa cgctaggtaa tgcccattaa tgtggtctgg gaggcccatc gcggcacatt
      301 taatttacta tctagaatac agtataacta acggcatctt atagtattcc tatgcctatc
      361 ccacatatca tatccttttt attttacggg gaagatacac tgttatggcg aagtgtcctc
      421 attgcaagaa agagtttgaa agagatgtag acgtacgaat cgtctatcca gataatgcag
      481 atgcaccagg tttgagatgt gcagttttca tatgccctaa tgaggaatgt gggatgttct
      541 tgggggctac aagtataggg tatggtcatg tacaaggagt tgaagaatta tgataagttc
      601 gtctgaagcc atagcttttc caagcttaga agagaagaaa tcaaatttta tctgacttac
      661 aattccatat aaatactcta tctactggtt tcctgtaacc cgagaagaaa tgtggtcttg
      721 ttcttagtta ctgatctgtt cacagggaca agattatttc aagcatcatt tacactcatt
      781 gggttgattc tctttatcat gcttaacaac cctattaccg acaaatagca acttaaatat
      841 cggtataatt ctaccgaaat gaaaaataat atggattctt tatgacaaac ggacaagaac
      901 gttccttgtt gagaatacgt actgaattca tctattcaga agtttaaatt cactttgtta
      961 tatcttgatt tacatttatt ccgtatttcc aattattttg atccatttct tgcatgaggg
     1021 agagcaatac actttcaatc gtttccaaaa ccgctttgcc cttttcaata ctagcatttc
     1081 gtggagatcc agtagtacct gtacttgtaa gttcatcaaa attccaatag atcctcacat
     1141 tggtaggtaa tttaggaatt gtgtcactcg gtgcaagatt catatcgacc aagtcaggac
     1201 gtactgctag cattgcggat gtctccgctt ctccaccgtg tcctaatcca ttccatatgt
     1261 caaataaatc cttccttatc tgtccaacca atgtccacca tgattctaag caacaaattg
     1321 tgacttctgg atgcgtgttt tttattgacc tagcagcatc ttctacagga gctatattac
     1381 catcatgacc atttattata agaattcgat ttatgttatt agagattaaa ctgttgagaa
     1441 tatcaataat gatttttact aatgtgtcag attggagact caatgtcatc tgaaagccgt
     1501 tatggtgcaa gcttactcca tatggcacag ccggtaaaac tatgacattt tctgtcattt
     1561 tagctattct ttctgcaatc tcgagaggaa aaatgaaatc agatccaaat ggcatatgat
     1621 caccatgatt ctcgcatgca ccaaaaacga gcacggcaac agtattttca tctacttttt
     1681 ttcttatctg tatcgcattc attgactcaa gaaaatatgg agaatttttt gtcataatga
     1741 ctttactcac atcgaaatta taagtctgac tatgaagtat gtctataaat tacaaatatg
     1801 agtgaaagtt gatctatata ccgaagcccc aatcaggcat tttttagcaa aaccaatttt
     1861 actagaaatg gtagataaga ttggatagtt ttgcaatccg caatctggca tttccttcta
     1921 gcaagtacga agtcattatt tccacttgag gggcatatca tttctacact attatgcgaa
     1981 aattagtgtc tccaaataaa tactgttttt tctatgcttc cgaaaaatgc aacaagaaat
     2041 tatcttacat cgtcaaatga attgtgaaga tcattccaac gattattttg tagacccttc
     2101 cacttttcat agtgtattac atccttcaga gccattctct ccaaccatcc aacattctca
     2161 agatcaggct tggcagaaaa ttcattaaca tatccaagac agagatatgc tacgggcagg
     2221 acatgatctg gtatcgagag aatcttttta agatcagcgg tagatagaat gctaacccat
     2281 ccaactccta ttccttcgac tctagctgct aaccaaagat tttgaattgc acaacaaaca
     2341 ctgtatacgc cagtttcggg tactgaagtt cttccaagta caaatggtcc aaattttgta
     2401 gggtcataag tcacacatat attgatagca gattctacta tcccctctag ttttaggcga
     2461 agatataatt tctgtctctc tttatctccc tttagtaaag aaattgattt ctctctctca
     2521 ttaatgaacg aatttttgac tagaagtcta tttgcataat ccttgatcaa gatgaaatcc
     2581 catggttgag aataacctac ggaaggggca tggtgcgcgg ctcttaatat ttgtgctaaa
     2641 atatagtctg gaatatctcg atcgataaaa tttgagcgga catcccgccg agcgtatata
     2701 gctttataca gaccctgcct ttcgcaatcc acaaaagagc tatcataggt gtcgttcatt
     2761 tgcatgtcat aaatcataaa ccaaataccc tactatatta gttctttcaa gatcgcatat
     2821 aggaaatctg gatcattaga agtcgattta catgttcgga taccgaacga attctactta
     2881 gcaggacaaa gcacaatgat tagctaagaa gaaccactga gattcaggga agcagtacaa
     2941 aaaatctgtt acggcaacga agattattta acggctatgc gatctaaaaa tatggtttct
     3001 cactggataa tcctagaatg aaaaaataag aaatattcta attcaggatg caaaagaata
     3061 tggagactta ataaggattg atgagaatcc aatttcgttt aaattagtca aaaagttgtt
     3121 tagttaatca aagcgaacca tgattcaata attgttacta ctcattcaaa agacatatca
     3181 tattcgtgcc attaatgcag tcttgaataa gtgcagttac cataaaagta cacatattgg
     3241 ttgtcttttt attgctagtt aagcgtacct ataattttgc acaactgcat tagaatcatc
     3301 tattaataaa ttaattaatt ggcaggatgc ccacgtactg tcaaatcatt gttagatagt
     3361 tctcttcttc atattctatg tagagtatat tatggttaca attcaacaat ctagtgatat
     3421 tagaattgtt catggtttgg ataaaggctt attagtgata ccctcaatat agtaacgata
     3481 tgaatgatac ttctgatttg gccgagtggc ttgctggcgg tcaatttgat cctgaacatg
     3541 agttcaactc aaaacgccga gagttggata aacttgatca tagagtaaat aagatcaaga
     3601 ctgtggatgt taacgcagaa tatagatagt tcaagcaata cgaaaaatca gatgtctata
     3661 gaaatgtaca aggtgcaaca cagttatt
//
LOCUS       DASSIK010000057         2239 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_111569, whole genome shotgun sequence.
ACCESSION   DASSIK010000057 DASSIK010000000
VERSION     DASSIK010000057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2239)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2239)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2239
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_111569"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(69..1412)
                     /locus_tag="VFI64_01090"
     CDS             complement(69..1412)
                     /locus_tag="VFI64_01090"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HET7241912.1"
                     /translation="MEKVEKFIIITTVFFTILILVLIPMWYYMSPAFSRAKITIENQN
                     ITDSSLKSQLITQGLKAPSAMAFIGPNDILVTEKNTGNVQRITNGIISSQPLLHVDTT
                     KKDERGLLGLATSQNTKSEKIYVFLYFTEAQLNDAGSPTPDPLGNRVYRYELVDNKLV
                     NPKLLLDLPALPGPRHNAGKMAIGPDDNLYVSIGDVDGSFKGLGTETKAQNYEDGPAP
                     DGRAGILRITQNGLPVGDGILGNTPILNLYYAYGIKNSFGFDFDPITGKMWDTENGPL
                     FGDEINVVEPGFNSGWVKVQGIWKLDVDPLEEPEKGEIATNGSLDLVDFGGKGRYSSP
                     EFTWSNTVGPTALRFFSSDKLGEKYKNDIFVGDIKYGNIYHFKLNKDRTGFILNGALA
                     DKVASGEDGTEQIEFAEGFGGITDLEIGPDGYLYVLIYDNEDGRIYRISPITSLQ"
     gene            complement(1735..1926)
                     /locus_tag="VFI64_01095"
     CDS             complement(1735..1926)
                     /locus_tag="VFI64_01095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241913.1"
                     /translation="MSADNYDGVEQNTRSFLKSLQQNPGPPIYTLLPDKARAILSGLQ
                     ASSTVQKLPAWDLLRKLVY"
BASE COUNT          652 a          471 c          377 g          739 t
ORIGIN      
        1 cagtagtgat tcccttaact tctaaattaa cattaacatg agtagtatct agctagattc
       61 aattgtttct attgcaaaga agtgatcggt gatattctat atatccttcc atcttcatta
      121 tcatagataa ggacatacaa atacccgtcc ggtcctattt ccagatcagt gatccctcca
      181 aatccttcag cgaattcaat ctgctctgta ccatcctcgc cacttgcaac tttatctgcg
      241 agtgccccgt tgagaatgaa accagttcta tctttattca atttgaagtg gtaaatatta
      301 ccatatttta tatctccaac aaaaatgtca ttcttgtatt tctctcctaa tttgtccgag
      361 ctaaaaaatc ttaaggctgt aggccccaca gtattgctcc atgtaaattc tggagaactg
      421 tatctacctt tgccgccaaa atctacaaga tctaaggatc catttgtcgc aatctcgccc
      481 ttttctggtt cctctagagg atcaacatcc aacttccaaa ttccttgaac cttcacccat
      541 ccactattga atcctggctc aaccacatta atctcgtcgc caaataaagg accattttca
      601 gtatcccaca tcttcccggt aatggggtca aaatcaaatc caaagctatt ctttatgcca
      661 taggcataat ataggttaag gattggtgta ttccccaaaa tgccgtcacc aacaggaagt
      721 ccattttgtg ttatcctgag tatacctgct cttccatcag gtgctggacc atcttcataa
      781 ttttgagctt ttgtttcagt ccctagtccc ttgaatgaac catccacatc tccaatcgaa
      841 acatatagat tgtcgtccgg acctattgcc atcttcccag cgttatgtct tggtcctggt
      901 aacgcgggca ggtccaaaag taattttgga tttactaatt tattatcaac taattcgtac
      961 cgataaactc ggttacctaa aggatctggg gtaggactcc ctgcatcgtt tagctgagcc
     1021 tctgtaaagt ataagaagac atatattttt tcactttttg tattttgtga agtcgccagc
     1081 ccaagcagtc ctctttcatc tttttttgta gtatcaacat gaagtaatgg ttgacttgaa
     1141 attataccat ttgttattct ttggacattt ccagtattct tctcagtaac taaaatatca
     1201 tttgggccaa tgaaagccat agcactcggc gctttgagac cttgcgttat taattgggat
     1261 tttagacttg aatcagtgat attttggttc tcaattgtaa tttttgctct agaaaaagca
     1321 ggagacatat agtaccacat gggaattaaa acgagaatta aaatggtgaa aaatactgtg
     1381 gttatgatta tgaatttttc aactttttcc attggcactc gtaagttatt gcgacaattc
     1441 atttattggc atttgaacta acgactatta tatttattct aaatattgtt cacctctata
     1501 gttagccaat gcgtacaaat gacccgttgc ttctacatgg aaatcgcaat tattcccatt
     1561 cgtaatctgc ccgagctgtc tgccactttg tctgctctgg ggcctttcat acaaaatctt
     1621 gctattccat tgaatatctt tacctcacag taagtttatc tatttatgaa ttgtatcaaa
     1681 ttgcaatcgg cttcttgaaa ttcgaaataa taatcgtgat gattctaatt actgttagta
     1741 aactaacttt ctaagtagat cccacgccgg aagtttttgg acagtactac tagcctgaag
     1801 tccagatagt atagcacgag ccttgtctgg taacaacgtg taaattggtg gtccgggatt
     1861 ctgttgaaga ctcttcaaaa atgatcgagt attctgttct accccatcgt aattatctgc
     1921 actcatacaa tatgctattg gttgacacta tttaagatga gcgggttact aaatcaagca
     1981 ctttatcatc agatatgaaa tactagtggc atttgcctag agactgatag cgttctccta
     2041 tgaggaatag aataatgtcc cctttgtccc tccacacaga gcagaaaatc aagacaaggg
     2101 aaaaataaaa aaaatcccgc atgagatttg agaaggctta aaaggtacaa actagggatc
     2161 ttgtaacctt taattcatgt cattatgttt catgcgtttt gtctataaca atgataaatg
     2221 caattccaaa ggggtaaga
//
LOCUS       DASSIK010000058         4009 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_806197, whole genome shotgun sequence.
ACCESSION   DASSIK010000058 DASSIK010000000
VERSION     DASSIK010000058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4009)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4009)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4009
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_806197"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            859..1173
                     /locus_tag="VFI64_01100"
     CDS             859..1173
                     /locus_tag="VFI64_01100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241914.1"
                     /translation="MPDSQSYRDRIYIVKDIIMKLVEYGELNQTALVSFCGLNLKKHR
                     SIFEKMELNGFISKAEISLGKRLVTVYKPTQRGLEFCRSILEPYEKVFPRGTKAANEP
                     EI"
     gene            complement(1210..1605)
                     /locus_tag="VFI64_01105"
     CDS             complement(1210..1605)
                     /locus_tag="VFI64_01105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241915.1"
                     /translation="MPADQEDHSSRTDILKMLDSFIDQMSKIRRTLKAISISALVLAP
                     LALALSLYLIRHPSFLGLMDSRDEFGIVLVTLLSAVIVISSIWIVTGIRQYRLIDSWS
                     KRYDEYVQRKEEIDREIASNFGVAEEPES"
     gene            complement(1674..1949)
                     /locus_tag="VFI64_01110"
     CDS             complement(1674..1949)
                     /locus_tag="VFI64_01110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241916.1"
                     /translation="MELGFTNPFRRWRPKGRMYSLKCSQCGNGFLSSYSLEAPICGSC
                     MQAAKSLDSTIDYDIQCTTCGNKGVIYSKKQCHACYFGLGNKDGEEK"
     gene            complement(2111..2605)
                     /locus_tag="VFI64_01115"
     CDS             complement(2111..2605)
                     /locus_tag="VFI64_01115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241917.1"
                     /translation="MTLHDSCYSVSFAYFVNNTLYDNGTSQVGSVNDTNGSSNITKSV
                     TISSQNVKIPTDGGSVDVLVQPSPFPLTIGDSKFKISFFQLSSETIQVHIDYDVVIKQ
                     SNKEIFRASALTGQPLLHTAEGVVTIPFKFNSSGNYTLEVAVMGINFVPIRTEYASFE
                     FNVK"
     gene            complement(2868..3416)
                     /locus_tag="VFI64_01120"
     CDS             complement(2868..3416)
                     /locus_tag="VFI64_01120"
                     /inference="COORDINATES: protein motif:HMM:NF012573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005509 - calcium ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HET7241918.1"
                     /translation="MSHHNIILIGLLFLSLIPTGVHIRWIWAISSQGIAQNNTDVDGR
                     VNETKRIDMTNNARIQNENHIIEGGSGIDALNGTNVEDMLSGGGGSDTIFGIGGSDEL
                     DGGAGPDKLFGGNGSDVLFGGVGNDNLQGDDGNDDLYGGPGADVLTGGQGADHFDCGT
                     GVDRIVDYNTTQGDIKSFNCEM"
BASE COUNT         1267 a          803 c          679 g         1260 t
ORIGIN      
        1 gaatggtatt tattttgatg ataatcaatc tttgtgacgc gcaggacaaa aggtacgaaa
       61 agaacaggta gatttctatt acaaggggac atcttacata cactgaattt acttttttca
      121 taaaattgat atcgagtaaa tttgttaatt tccctattac gtcacatttt gtcatatttt
      181 taattttata agccagaata aaggctatgc atcacgttca aggaagggag ggactctatc
      241 acaaatctga attgaatagt gagtatatga aatgcatcat atttacctac gaaggtccta
      301 agtccttctc gccatagata acaaatttgg catcatgcat ctgatgtgat cgtgagaaga
      361 attttatttc ccttccgact taaaaagcca ttgtaatgaa cgtattcgtt ttggtttgca
      421 cgattttttg tataatattg ttattattta ttgcctatgc cttcatagca aataaggatt
      481 cagcccctgt aagcgcgcag caaaagaggt tattagcaaa atctgttaat attactagtt
      541 ctccaaatga atctgtggat aataacactg acaatgggtg aaatcgtctg ttgatttgta
      601 aggtgaaaga agcccggaat tttaaataat attaattcat tctcagggac acaattctga
      661 tagactttag ttgcgatcaa aagtccttct tgtaggcaaa ataatatcaa cacttgccaa
      721 tagcgatact gcctgttgtg atggtagaac tatccagcat atcattaaat ttcaagaggt
      781 aagtcctgag taattaatca aacaaaaaat aaggtaataa gctaagcata taacccgcag
      841 ttcataagat ttaatcaagt gcctgattca cagtcgtacc gcgacagaat atacatcgtc
      901 aaagatatca tcatgaaatt agtcgaatat ggggagctta accaaactgc tttagtaagc
      961 ttttgtggac ttaatttaaa gaagcacaga tcgatctttg aaaaaatgga actcaatggt
     1021 ttcatttcga aggctgaaat atcacttggc aagagattgg taacggttta caagcccaca
     1081 caaaggggac tcgaattttg tagaagcata cttgaaccat acgaaaaagt ttttcctaga
     1141 ggcaccaaag cagcaaatga gccagagata taaagaatta ttggataata taactaaggt
     1201 gcttccgaat taggattccg gttcttcagc tacgccaaag ttcgatgcta tctccctatc
     1261 tatttcttct tttctctgaa cgtattcatc ataccgctta ctccaggagt caataagcct
     1321 atactgtctg attcccgtga ctatccaaat tgatgagata actattaccg cactcaagag
     1381 cgttaccaag acaatcccaa attcatctct agaatccatc aggccaagaa atgatggatg
     1441 acgtatcaga taaagtgata gcgctaatgc aagtggggcc aggaccaaag ccgagatcga
     1501 tattgctttc aaggttcttc tgatcttaga catttgatct ataaatgagt ccaacatttt
     1561 caagatgtct gtacgggacg aatgatcttc ttgatcagcc ggcattttgg atcaccaaca
     1621 ccttgaataa tatcattctg cctaaatgat agtctttgag agtcgtaaat tgactatttt
     1681 tcttccccat ctttattccc taaaccaaag taacaagcat ggcattgttt ttttgaatat
     1741 atcactcctt tattaccaca tgtagtacat tgaatatcgt aatctatcgt agaatccaat
     1801 gactttgcgg cctgcataca actaccgcaa attggtgcct ccaaactgta gctggacaaa
     1861 aacccattcc cacactgact acatttgagg ctatacattc ttccctttgg cctccatctt
     1921 ctaaatggat ttgtaaaccc caactccata ttcacaccgt tttatgatat acatacttaa
     1981 ttaacttaag ttaaccttgt taatctgaat atggttctgg gtataagaat ctatggcaga
     2041 tacctaattg cgtaaattct tcacttgaat aatagaatgt atgtgagtag ttgcatcgtc
     2101 aatccggtaa ctattttaca ttaaactcga atgaagcata ttcagtccta attggaacga
     2161 aattgatacc cataactgca acttctaggg tataatttcc agaactatta aatttgaaag
     2221 gaatggtaac aactccttca gctgtatgaa gcaaaggctg tcctgtcaag gcagatgcac
     2281 ggaaaatctc cttattcgat tgttttatga caacatcata atcaatatgt acctgtattg
     2341 tttcactcga tagttggaaa aagcttattt tgaatttgga atcgcctatc gtcaagggaa
     2401 atggtgaagg ttgtaccaat acatctacac tacctccatc ggttgggatt ttcacatttt
     2461 gagaggatat agtaactgat ttagttatat tcgaacttcc attggtatcg ttcacactcc
     2521 cgacttggga tgttccatta tcgtataatg tattattaac aaagtatgca aaagaaacgg
     2581 aataacaaga atcatgtagc gtcaacgata caattatgaa tgcaatttgc aaaataacta
     2641 taagatggat taaaaatttc gtcttgtcca tcatacaaca gtcaaacata atcaatacac
     2701 atttactatt aaatcttgca cattgtctcc ctatcatatt gatatggaat aggtcaatcg
     2761 tactagcata ctagtttctg attcgtgaat ggttcctagt cattattgtc tgttttttag
     2821 aatgatgcag gaggtgatca tacacggcgg tacttccacg tcacatgtta catttcacag
     2881 ttaaatgact tgatatcccc ctgcgtcgta ttatagtcca ctattctatc aactccagtg
     2941 ccacaatcga aatgatcggc accctggcct ccagttaaga catcggcccc tgggcctccg
     3001 tacaaatcat catttccatc atcgccttga agattatcat tgcctactcc tccgaataat
     3061 acatcactgc catttcctcc gaacaactta tcgggtcctg ctccgccatc gagttcatcg
     3121 cttcctccaa tcccaaaaat ggtgtccgaa ccacccccac cagataacat gtcctcgacg
     3181 tttgtcccgt tcagagcatc aattccacta ccgccttcta ttatgtgatt ttcattttga
     3241 atcctagcat tattggtcat atcaattctc ttcgtctcat ttactcgtcc atcaacatca
     3301 gtgttgtttt gtgcaattcc ttgagacgaa atagcccaga tccacctgat atgtacgcca
     3361 gttgggatca gactcaggaa cagtaaacct atcaaaatga tattatgatg cgacatgata
     3421 attatcacct tctttataca tattgaaatt taaagcattc accaatcaaa gccttcgtaa
     3481 atatgaaagt gtattaccaa aatagcgtga catctagaac cctctcttta ggggaataat
     3541 aaaggctaac attcagaaaa aaaaatccct ggatggttaa ttcggttcta tttgtgaatt
     3601 cgaatgctgt aatgttttgt cgataaggct ggattataca aattttgtta ggaagatcca
     3661 caaattgggt aatcaatatt caggagaaaa tttcttactt cgatcttcta agcctaaacc
     3721 tgctctattc tgtattgcac aatccaaatc atctgactat acaagaattt cctattaaca
     3781 agtttctata tatttaatta gtttagttat catacggaag aatatgtttg caggcaaatt
     3841 cttgttggta ttattattct tcttatgcat gtccttgact acttcgtcaa tcactgctag
     3901 tacctctcaa aagacgtctt tggaggggtc acaacctatc ggcatcaacg atacgagtac
     3961 ttttgataat gaaacacttc agactaagga aatcaacagc tcgaaagat
//
LOCUS       DASSIK010000059         3263 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_405829, whole genome shotgun sequence.
ACCESSION   DASSIK010000059 DASSIK010000000
VERSION     DASSIK010000059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3263)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3263)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3263
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_405829"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(511..1848)
                     /locus_tag="VFI64_01125"
     CDS             complement(511..1848)
                     /locus_tag="VFI64_01125"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF016724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HET7241919.1"
                     /translation="MAAISNLRFPFELKDDQLQAVEAWIHNRCVGSVIFSTGTGKTEI
                     AFECARRMADIVLATNRSSTFLSTEKQMNLKFFTILFLVPRIVLIGQNVERLIKYGLS
                     AEHIGIYFGERKDIREITISTYQSAINNLDLIRKADLVILDEIHLISETASEYSKIFA
                     LIAEDPNKGVLGLTATIDDTDPKYSTIMSIAPPVKKYMIREAVNDGRLAKPQIIPQMV
                     KFTIHEQAIYDDTSRRIRELSRKLGQFNPGIISMMLTKGGYRAKLAKSWFENVRKRKE
                     LLSTATNKLYAVIKIVKEHPHEPIMIFSETISSIKKLEEMLTANGIKANVIHNEISIR
                     DRKEILKRWGKEFYPLLSVHTLEIGYDIPQVRIAIIIANSSNVNQITQRIGRVIRKSI
                     GKNDALIFIVYVKDTKDNNILKIVKSTINMEESKTQLKLPNHSGQRRMSEFYS"
     gene            2221..2850
                     /locus_tag="VFI64_01130"
     CDS             2221..2850
                     /locus_tag="VFI64_01130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="PsbP-related protein"
                     /protein_id="HET7241920.1"
                     /translation="MKQKAQNDSIVIAFITMIVIVGACVFVNFYGFSIQAINDYPHDL
                     TVQVNETSSTFIRTYENPILGVKFEYPLEWGEPSIRDNSVSFSSSSNSKTQFFDITIS
                     VETLPPGFIDLQQFMREKFGKYQTLPEFKIVELNKTTLAGFPALKLRYNYLENLLLNN
                     VNVTSMNVFTIKGNTAYDILLHTRVSNYDFYLSEVQKLMDSFKIISILS"
BASE COUNT          994 a          590 c          545 g         1134 t
ORIGIN      
        1 gatgttcaac atctttgtat ttctttagat caccttcatt gtctccaaat gcgttactaa
       61 ttaattggtt ccaattagat attccgatag ctgttaacaa tcctattcct agaaccaatg
      121 ttgacgccac tcgattttgc atgaagaaaa ttctagaagc agtttataat agattactca
      181 tcatcatttt gtacattatg ttcaatattt cgcaattatc acacgtacca caaaacaata
      241 attgaaatta ttttaacttt tggacgaata tgttgtagta tgttcctaac atactggtct
      301 atccatgaag atgatcatgg tcaatatctc atctcatatc gagaatcata ataatatctg
      361 cttatatcta tgattctcta aatcaaatac gttcgatgca taggaacata atacagatat
      421 cgagggctcg cttagtgtgg gaaagcagtc tattcaacac aaattgattg tggtcttaac
      481 tgataggctt ggaagactat cttcatttag ctaactataa aattctgaca ttctgcgctg
      541 cccactatga tttggtaatt ttaattgtgt cttagattct tccatgttaa tagttgactt
      601 gacaattttt agaatgttat tgtccttagt atccttcacg tatacaataa atattagtgc
      661 atcattcttt ccaatagatt ttcttattac ccttccaatt ctttgggtta tctgatttac
      721 attggaactg ttagctatta ttatcgcgat tcgtacttgc ggaatatcat accctatttc
      781 taatgtgtgc accgaaagaa gaggataaaa ctcctttccc cagcgcttta atatttcttt
      841 tctatctcta attgagatct cattatgaat aacattagcc tttattccat ttgcagtcag
      901 catttcttcc aactttttta tggaacttat cgtctcacta aaaatcatta tgggctcatg
      961 tggatgttct ttaactattt ttataaccgc gtatagttta tttgtcgcag tgctaagcaa
     1021 ttcttttctt tttctaacat tttcaaacca cgattttgcc aatttagctc tgtatcctcc
     1081 tttcgttaac atcattgata tgatgccagg attaaattgt cctaatttac gtgataattc
     1141 acgaatacgt ctgctagtat catcataaat tgcttgttcg tggattgtga attttaccat
     1201 ttgaggaatg atttgtggtt ttgcaagtct tccatcattc accgcttcac gaatcatata
     1261 ttttttcact ggcggagcga tactcattat cgtactatat ttaggatcgg tgtcatctat
     1321 cgttgcggtt aatcctaata cccccttgtt agggtcctct gctatcaggg caaatatctt
     1381 agagtattca cttgcagttt cactaatcag gtgaatttca tcaaggatta caagatctgc
     1441 ttttcttatc aaatctagat tattaatggc gctctgataa gtgctaatgg taatctccct
     1501 aatatccttg cgttcgccaa agtaaatacc tatatgttca gcagacaatc catatttaat
     1561 taatcgttct acattttggc caataagaac tatcctcggc actagaaaca atattgtgaa
     1621 gaatttaagg ttcatctgct tttcagtaga cagaaaagtt gatgacctat ttgttgccag
     1681 aacaatatcg gccatacgtc tagcgcattc aaaagcaatc tctgtctttc ctgtacccgt
     1741 actgaaaatg actgaaccta cacatctgtt atgtatccat gcttcgacag cttgcagttg
     1801 gtcatccttt agttcaaacg gaaatcgaag attggagatt gcagccaata atatagacgg
     1861 gaaccacatt taactaaaag cttttggatc tgtgcgtcaa tttagaattg gcgggacagt
     1921 cattggtagg actgatttgg attggccaat aatgtttggc tctcttgtca agagttctac
     1981 ctaactctat taattaacaa tttgacaaag tcatgaaaaa ttccagatct cgagaactca
     2041 ttcggtagca ataccactca tgcaacacat gcaacagcct acattaacta tatttctaca
     2101 tccacggctt gaatgatgta agtacaaata cttgatcgga aagttaacac aattgtataa
     2161 atcagtattc cattcatgtt atgactaagg tatatttaca gcggatttga gtaatacata
     2221 ttgaaacaaa aggcccaaaa tgattcgatt gtaatcgcat tcataacaat gatcgttatc
     2281 gtgggtgctt gcgtatttgt taatttctat ggtttctcta tccaggcaat caatgattac
     2341 ccgcacgact tgaccgtaca agtcaatgaa acttcatcaa ctttcattag aacatatgag
     2401 aatccaattt taggcgtaaa gttcgaatat cctttggaat ggggagagcc atcaatacgg
     2461 gataatagtg tttcctttag ttcctcatca aactcaaaaa cgcagttttt tgatatcaca
     2521 atttctgtag agaccttacc acctggtttt attgatcttc aacagtttat gagagaaaag
     2581 tttggaaaat atcaaacatt accagagttt aaaatcgtcg aattgaacaa aacaacattg
     2641 gcaggcttcc ctgctcttaa attacgttat aattatttag aaaatttact tttaaacaat
     2701 gtaaatgtta cttctatgaa tgtctttact attaagggta ataccgctta tgatattttg
     2761 cttcacacaa gagtatccaa ctatgatttt tacctttccg aagtgcaaaa gttgatggat
     2821 tcgttcaaaa taatatctat cttgtcttaa tcagatttct aggactccta acttgttgag
     2881 aaatggtggg agttaggtac aggataatcg atgtggaagc tgaatatttc agactaatgt
     2941 aaactatcag tttatgattt tggtgatgct tgagactgcc gatgcataat taagctgagg
     3001 gaagaaaatt agagtgcaat gcaatgatta actcattaat caatgtatga agccaaatcc
     3061 ttcaaggaat aaggagtcct gagatatttc agtactttgt tacacatatc gtagttaacg
     3121 aaattaaaag gcgttggaat tttggtgata acttgaaatc cttgttcggc attttagatt
     3181 ttgaatgtgt gaacatattg aaaagttaaa agctcaagga tatgttgacg gcagtttaat
     3241 atatcttcaa aggctcgagg tca
//
LOCUS       DASSIK010000060         3779 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1389465, whole genome shotgun sequence.
ACCESSION   DASSIK010000060 DASSIK010000000
VERSION     DASSIK010000060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3779)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3779)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3779
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1389465"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..456)
                     /locus_tag="VFI64_01135"
     CDS             complement(<1..456)
                     /locus_tag="VFI64_01135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HET7241921.1"
                     /translation="MISTPSPIISAKKKKSQSIINHKYENRTSKKPKKSNSSNGHGKG
                     EQSVQPILSYLIDVDTLRTLIRKKAIRVVDVRRTEEYNKGHIESAVSIPLASVLDAEL
                     PEKVITIMQDAGIGDHTPVAVYDDTFGALAARVAWTFQYAGHANTSLLEL"
     gene            complement(453..2291)
                     /locus_tag="VFI64_01140"
     CDS             complement(453..2291)
                     /locus_tag="VFI64_01140"
                     /EC_number="1.8.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0050311 - sulfite reductase (ferredoxin)
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite/sulfite reductase"
                     /protein_id="HET7241922.1"
                     /translation="MKNVLNNSHTKKSLYSPKSNPRWGREEETDIFSQRVKLFRQGKI
                     SEDDFRRFRLQHGAYGSRLQQNYSMVRIKIPSGEITPEQLEKIASLAEAFSIGSAHVS
                     TRQNIQLHWVQLEDVSEVMRGLVEVGLTTREACGNTVRNVMCSHFAGVCPDELFDPTP
                     YAMAIARFFLRNPMCQNLPRKFKINFGCCQKHGLMRVADIGLVPSKRDELKGFKIYLG
                     GGLGAASFIGHELEDFTPEDKVLATCMAVIRLFDRHGNRENMARNRMRYLVHEMGWTK
                     FQQLVLKERSIVDMTISFSTAKSFDFKSEKDNSRRLPESTRAKIKLPVINERINPDTS
                     TYDRWVHTNVVAQRQEGYNVVFVTLGAGDITSSQLRGLAGIIRDLSAEQSARNTPNQN
                     FAIRFVRTEDLSNFYDKLSNIGLANPGALTITSAVGCSGTTSCNLAITNSHRLAKEVQ
                     LRLLQLGLDTDDSLSHSTIKISGCPNSCGQHEIATIGFFGGASRISGSMAPTYTMLFG
                     GSAEENGELGKNVMRVPAKRVIDTILKIVEIYREERTGNESLDAWITGIVKGQGNKKV
                     RNLDDIKLALSSVTNLPSITEDPESYRDYGNDVKFTAKTAKGECAA"
     gene            complement(2498..2572)
                     /locus_tag="VFI64_01145"
     tRNA            complement(2498..2572)
                     /locus_tag="VFI64_01145"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2535..2537),aa:Val,seq:cac)
     gene            complement(2689..>3779)
                     /locus_tag="VFI64_01150"
     CDS             complement(2689..>3779)
                     /locus_tag="VFI64_01150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004013 - adenosylhomocysteinase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="adenosylhomocysteinase"
                     /protein_id="HET7241923.1"
                     /translation="TGVLIRTIRALGAEIAWCGCNPLSTQDDVAASVAQEGISIFASR
                     GVSNEQYYDDIHSTMKIKPNITIDDGADLTVEMHNDGYVQDEPVYGGTEETTTGVIRL
                     RAMQSAGKLKYPIIAVNDAETKHDFDNVYGTGQSALDGIIRATNILIAGKNVVVAGYG
                     HVGKGISKRADGLGANVVVTEIDPIAALKAKLDGYGVLPMNAAATVGDIFITTTGCKG
                     VITGQHIGKMKDGTLLANAGHFNVEISVNDLEATSVSIKQINDNNQEYLLKNGNKIYL
                     IGEGRLVNLAAAEGHPSEVMDMSFANQLLSVLKLANLKGSLTPAVYDVEKSQDQEIAK
                     AKLESMGLQIDVLTPEQRIYLEGFGEGT"
BASE COUNT         1021 a          862 c          691 g         1205 t
ORIGIN      
        1 taattcaagg agtgaagtat tagcatggcc tgcatattga aatgtccatg caactcttgc
       61 ggccaaagca ccgaaagtat catcatatac agctaccggc gtatgatcac ctatgccagc
      121 gtcttgcata atggtaatca ccttttcagg taattcggcg tcaagtacgg aggccaatgg
      181 tatggaaacg gcactctcaa tatgcccttt gttgtattcc tcggtcctgc gcacatctac
      241 aacacgtatt gctttcttcc tgatcagtgt tcttagagta tcaacatcaa ttagatatga
      301 gaggataggt tgcacacttt gttcgccttt tccatggccg tttgaagaat ttgacttttt
      361 tggcttcttt gaagttctgt tctcatattt gtgattaatg atagactggg attttttttt
      421 cttggctgaa attattggcg atggagtaga aatcaagcag cacattcgcc cttggcagtc
      481 ttggcagtaa atttgacatc attcccatag tcacgataag attctggatc ttcagtaatt
      541 gaaggcagat ttgtaacact agacaatgcc aatttgatat cgtctaaatt ccttactttt
      601 ttgtttccct gacctttgac aattcctgtg atccatgcat ccaaagattc gtttcctgtt
      661 cgctcttccc tataaatctc tacaatcttc aaaattgtat caattaccct tttggctgga
      721 acccgcatca catttttccc taactcaccg ttttcttctg cactaccacc aaaaagcatc
      781 gtgtaggtag gagccattga accagatatt ctagacgcac cgccaaagaa tccaatagta
      841 gcaatttcat gttgtccaca tgaattcgga caaccactaa tcttgatggt actatgactt
      901 agtgaatcgt ctgtatccag tcctagttga agtaacctta gttgtacctc ttttgctaac
      961 ctatgtgaat tggttatggc cagattgcac gaagtagtac cagaacagcc gaccgcagac
     1021 gttattgtca gtgcgcctgg atttgccaaa ccaatatttg aaagtttgtc gtaaaaattc
     1081 gacaaatcct cagtccgaac aaatcggatc gcgaaatttt gatttggagt gttcctggca
     1141 gattgttccg ctgaaagatc acgaattatg ccagccaaac ccctcaattg actcgatgta
     1201 atatctcctg ctcccagagt tacaaaaaca acattgtaac cttcttgtct ttgagccaca
     1261 acattcgtgt gcacccatct atcatacgta gaggtatcag gattgattct ttcgttaatg
     1321 actggaagtt ttatcttcgc tcgggtcgac tctggcaagc gtcttgaatt atctttttcg
     1381 gatttgaaat caaaagactt ggcagttgaa aaagatatag tcatatcgac aatgctcctt
     1441 tccttaagaa ccagttgctg gaatttggtc catcccattt cgtggacaag atatctcatc
     1501 ctatttctag ccatattctc acgatttccg tgtctatcga aaagccttat cactgccatg
     1561 caagtcgcca gaaccttatc ctcgggagtg aaatcttcta attcatggcc aatgaaagag
     1621 gcagcaccga gtcccccacc caaatatatt ttaaatcctt tgagttcatc cctctttgag
     1681 ggaacaagcc caatatctgc cactctcatt aatccgtgtt tctgacaaca tccaaagtta
     1741 atcttgaatt tacggggaag attttgacac atggggttac gaagaaagaa tctagcaatt
     1801 gccatagcgt agggtgtcgg atcaaacaat tcatctgggc atacgcctgc aaagtgactg
     1861 cacattacat ttctaactgt atttccgcaa gcttctcgag tagttagtcc aacttcaaca
     1921 agacctcgca tcacctcact tacgtcttcc aactgaaccc aatgtaattg aatattctga
     1981 cgagtggaaa cgtgagctga tccgatagaa aatgcttcag ccaacgacgc aatcttctct
     2041 aattgttctg gagttatctc tccacttggt atctttattc ttaccatgct gtaattttgc
     2101 tgaaggcgtg atccatatgc accgtgttga agacggaatc gacgaaaatc gtcttctgaa
     2161 attttccctt gtctgaagag tttaactctc tgactaaaaa tgtccgtctc ctcttctcgg
     2221 ccccatctag gattagattt gggcgaatat aatgacttct tggtgtgcga attattaagt
     2281 acgttcttca aagatatcta ttttctcttc tctgttcaaa accatatatt ttttgtggat
     2341 acaggccatt tttgtaccac agtctcaaaa tgatggaatt tattgagcac agttagttta
     2401 taataccctg gttttctctc ttcagatttc ccggaaagtt agagttactc aataatgatg
     2461 ttataatcaa tacccttatt cagggaatta ccttcagtgg atggggagag atttgaactc
     2521 tcgaccacct gcgtgtgagg caggtatcct aaccgggcta gaccacccat ccgagttata
     2581 tggcatttcg aagttcgatt ttttgcaggt cgatgttata ttaaaatctt gatgcatagt
     2641 attgcgttgt attacacaca cttatgtgat gactaatgca tcatcatact aagttccttc
     2701 gccgaaaccc tcaaggtaaa tcctttgttc tggcgtaaga acatctattt ggagacccat
     2761 ggactctaac ttagctttag caatttcttg atcttgagat ttctctacgt cataaacagc
     2821 tggtgtcaga gatcctttca aattagctaa ctttaaaaca gaaaggagct gattggcgaa
     2881 gctcatgtcc attacttcag atggatgtcc ttccgcagca gcaaggttaa cgagtctgcc
     2941 ttcaccaata agatatattt tgtttccatt tttgagtaaa tattcctgat tgttgtcatt
     3001 aatctgttta atagaaacag acgtggcttc cagatcattt acggagattt ctacattaaa
     3061 atgacctgcg tttgccaaga gtgtaccatc tttcatcttc ccgatatgtt gacctgttat
     3121 cacacctttg catccagtag tggttataaa aatatctcct acagttgctg ccgcattcat
     3181 aggcagtacg ccataaccat ctaatttcgc cttcaaagct gctataggat caatctctgt
     3241 aaccaccaca tttgcaccaa gaccatctgc acgtttagat atcccttttc ccacatgtcc
     3301 gtaaccagcc accacaacat tttttcctgc aatgagaata tttgttgcgc gtattattcc
     3361 atcaagcgct gattgacctg taccatagac attgtcaaaa tcgtgtttag tttcggcatc
     3421 atttacagcg ataataggat acttcaattt tcctgcgctt tgcatggcac gtagtcttat
     3481 cacaccggtc gtcgtttctt cagttcctcc gtacacaggc tcatcctgaa cataaccatc
     3541 gttatgcatc tcgactgtca gatcagcacc atcatcaata gtgatgttag gtttgatctt
     3601 catcgtagaa tggatgtcgt cataatactg ttcattggaa acacctctac ttgcgaaaat
     3661 tgaaattcct tcttgggcta cagatgctgc aacatcatct tgggtactta gtggattaca
     3721 accacaccac gcaatttctg ctcccaaagc ccttatagtt cgaatcagaa ctcctgttt
//
LOCUS       DASSIK010000061         2755 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1300323, whole genome shotgun sequence.
ACCESSION   DASSIK010000061 DASSIK010000000
VERSION     DASSIK010000061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2755)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2755)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2755
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1300323"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            403..816
                     /locus_tag="VFI64_01155"
     CDS             403..816
                     /locus_tag="VFI64_01155"
                     /inference="COORDINATES: protein motif:HMM:NF026244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lsm family RNA-binding protein"
                     /protein_id="HET7241924.1"
                     /translation="MSALTNRKFNEEMIQFVGKKVSVETSDKKNYNGIMSAIDEKLDL
                     VLDNVEGQGILKLIINGAFVKEVKLLEKPFDLKGLAERLARVFPGLVRVRDDVGAIIV
                     MEKIKVTQAGVEEGAGLAADRVKAVYDEFMRDSKK"
     gene            986..2539
                     /gene="tgtA"
                     /locus_tag="VFI64_01160"
     CDS             986..2539
                     /gene="tgtA"
                     /locus_tag="VFI64_01160"
                     /EC_number="2.4.2.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016763 - pentosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(15) transglycosylase TgtA"
                     /protein_id="HET7241925.1"
                     /translation="MSFEIRYSDLAGRIGKLSTPSGVIETPAFIPVIHPIKQSISPQF
                     IKSLGFDAVITNAYIALGHYGKEAVEKGIHKIIDFDGIVMTDSGGYQVLEYGSIDVKP
                     TDIAEFERDIRSDICVPLDKPTGYGLEHSLANRYVEETIENTQQTIDMIGDPDIPRGA
                     IWVGPVQGAEHLDLVKKSADLLDKMHFQMFALGSPVQLMQAYEFAILADIIATVKRTI
                     PTKPIHLFGAGHPLTIPLAVALGCDTFDSASYILYARDNRYMHQNGTSRLEDLTYFSC
                     QCPVCTSYTPTELLGTPWDERIDELAKHNLYVLRAEVLAVKQAIRDGRLWEYVTQKAR
                     AHPKLTEAVMNFSRYEFLNVGTALFKKKAIFFNGPQDQYRPEALRFRKMITQFKTRKK
                     GDLILFPEGQVSPFYTSQAFLKLSKKFPDDQICTYNPYIGIVPAEVSDIFPAAHNVVS
                     QDKLFIHKVGDFPTFIESLENFLVFNKFKNITIVTDSFMREVIKDYKPENDRLVKVLE
                     YHFEVIDSM"
BASE COUNT          888 a          494 c          570 g          803 t
ORIGIN      
        1 aagaaacgta ttgaagcata acaaagattc tgttgaatcg accgggaaga tctctaggat
       61 gcgatgtgcc cagtgtcttt acatctgtta cgtgtctgaa aatgaaccta cgtcgtgttt
      121 tagatgttat agtagtgaac tacacacttt tcccaagaaa aaggaataat tctatacgag
      181 gtaaatatcc tagtattggg aattgatacc tataatacta gtaataaggc gatgacgtac
      241 atccaattag catactgaac tattcaaaac aatatttcat ttcaaatatt atcttggagg
      301 ctatttaata tgcaagggct aaatgctgct aattggcttg gatccggaca tccactattg
      361 aaactcatat atatagacct gcggtatctt ccgtgaaaga gaatgtcagc tttaactaat
      421 cgaaaattta atgaagaaat gattcaattt gttgggaaaa aagtctctgt cgagacatcg
      481 gacaaaaaaa attataatgg tatcatgtct gccattgatg aaaaacttga tctagtctta
      541 gacaatgttg aaggtcaagg gatattaaaa ctaattatca atggtgcatt tgtaaaagaa
      601 gtaaagttac tcgaaaaacc cttcgattta aaaggccttg ctgaaaggct ggcaagagtc
      661 ttccccggct tggtcagagt tagagatgac gtaggagcta taatcgttat ggaaaaaata
      721 aaggttaccc aagctggtgt agaggaaggg gccggtcttg ctgcggaccg ggtaaaggcc
      781 gtttatgacg agttcatgag agattcgaag aaataatcat ctaccttttt caatcctccc
      841 tttgttatct attggtgtcc actacagcat gattaatgaa acggaagcct atagcgtaca
      901 ttaagaatta attagtgcct acttactacc cacgtgttat gtttgtttgt atctttggat
      961 ctgagtggag ttctaactat caaatttgtc atttgaaata agatattctg atttagccgg
     1021 acgtattgga aagctatcca ccccaagtgg agtgatcgaa actccagcct tcatacccgt
     1081 aatccatcct ataaaacagt ctatcagccc ccagttcatc aagagccttg gttttgacgc
     1141 ggtaataaca aatgcgtata ttgcacttgg ccattatggt aaagaagcag tagaaaaagg
     1201 gatccacaag ataattgatt ttgatggtat tgttatgaca gattccggtg ggtaccaagt
     1261 gcttgagtat ggttcgatcg atgttaagcc tacagatata gctgaatttg agagagatat
     1321 tcgtagcgat atttgtgtcc ctttagacaa accaacaggg tatggccttg aacatagttt
     1381 agcaaataga tatgttgaag aaacaatcga gaatacgcaa cagaccatag acatgattgg
     1441 agatcctgac attcctagag gagcaatttg ggttggacct gtgcagggtg cagagcacct
     1501 tgacttggtc aaaaagtctg cggatttgct tgacaaaatg cactttcaaa tgttcgccct
     1561 tgggagtccc gttcaattaa tgcaagcata tgaatttgca attctggcag acattatagc
     1621 aacagtcaag cgaacgatac ctaccaagcc gatacacctt tttggggcag gtcatcccct
     1681 cacaatacca ttggcagtag cattgggatg tgacaccttt gactcggcat cttatatatt
     1741 atatgctagg gacaacaggt acatgcacca aaatggcact tctcgattag aagatttaac
     1801 ttatttttca tgtcagtgtc ctgtctgtac ctcctatacg ccaacagagc tcctaggaac
     1861 accttgggat gagaggatag atgaactggc aaaacataat ctctatgtat taagagctga
     1921 ggtcttggca gtaaaacagg cgataaggga tgggagattg tgggagtatg ttactcaaaa
     1981 ggcacgagcc catccaaagc tgacagaggc ggttatgaat ttctcaaggt atgagtttct
     2041 aaatgtagga acagctcttt tcaaaaagaa ggcaattttt tttaatggac ctcaagacca
     2101 atatagacca gaagctctca gatttagaaa aatgataact caattcaaaa cccggaaaaa
     2161 aggagacctc atattatttc cagaggggca ggtttctcct ttctatactt cgcaagcctt
     2221 cctgaaactc tcaaagaaat ttcccgacga tcagatatgt acatacaatc catatattgg
     2281 gatagtacca gcagaagttt cggacatttt tcccgccgct cataatgtag tgtcccaaga
     2341 taaactattc atacataaag taggtgactt tccgacattc atagaatcac ttgagaattt
     2401 tcttgtgttt aataaattca aaaatatcac aatagtgact gattctttca tgagggaggt
     2461 aatcaaggat tataaacctg aaaatgatcg gttggtaaaa gttttggaat atcatttcga
     2521 ggtaatagat agtatgtgat tatactctac tcaaaaccct acctttgagt tcactctggc
     2581 atatggaaac agtcgaggtt ctttagtgaa tggcaaattg acgtggagta aaaataaaac
     2641 tgttccttaa atgaatgcat tccctgttag gggtttgagg gaaaaatttt tagattttac
     2701 ttcattgata acaccaatga taacaaaaaa acgcgatttt catttaattc ttttt
//
LOCUS       DASSIK010000062         2526 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1389923, whole genome shotgun sequence.
ACCESSION   DASSIK010000062 DASSIK010000000
VERSION     DASSIK010000062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2526)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2526)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2526
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1389923"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(246..1232)
                     /locus_tag="VFI64_01165"
     CDS             complement(246..1232)
                     /locus_tag="VFI64_01165"
                     /inference="COORDINATES: protein motif:HMM:TIGR01297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HET7241926.1"
                     /translation="MVAGSKKAVYAALFGNLGIAIAKMIAAIMTGSSAMWSETYHSFS
                     DTFNQVLLLIGIRTSTKVPSERHPFGFGKEQFFWSFVVATMLFGISGILSLEKGFGSL
                     YNPIAHIENVGVSYVILLISAVFEGNALRIAFKLFRQTIELRGEKFSLGMLLTEFQES
                     KDPTILTVMVEDSAALLGLGIAAVGLYLSDLTGNTIYDALSSVAIGIVLMLFAFFLAK
                     ENRALLIGEAISKRDYNRIIESVLRIQEVNRVISLRTMHFGPKDVLVAMDVSLADNMN
                     TDSIELVIDSIEERVRQVLNLATPSKIYVEVERDSCPIRSKRHTDPLKGNKT"
     gene            complement(1292..>2526)
                     /locus_tag="VFI64_01170"
     CDS             complement(1292..>2526)
                     /locus_tag="VFI64_01170"
                     /inference="COORDINATES: protein motif:HMM:NF013591.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="M3 family metallopeptidase"
                     /protein_id="HET7241927.1"
                     /translation="KIISTNGKYRIKNARVNWNTWRQFNSAEDDIKARKSVFDEFIAK
                     THFIAPTIEKRFNIIRNLFSWFSKKDNPLVKNSYRSNLDPLSSYLESEQVTYSQLKRL
                     VTKMGEGARRPFAHSLSLASQIIGRTPEYYDDFYYFRNRIFRDVEKPFAKVDPVMAVK
                     RTLKSMGFDLSAISFDVEDRPTKYPSPICFFVKIPNDIRVLYKSESPYFDLQGCYHET
                     GHAVHAATIDTNLSYANKYKFPMGIAEIFSIFLERLTMNPSYLNSVLGVRDEKLLDKL
                     IERNKFMELFFVTFYSANSLMKMEFWRKDLSIDQASQLYERLIKKYTGFKIPGQYWML
                     HHILPEAIMYVPSYLMAASRAAELETYLKDRFGERWWNEEGAAKLLKEVMSKGGRIDL
                     GIFSSMDPNIFMKEIIDL"
BASE COUNT          750 a          524 c          473 g          779 t
ORIGIN      
        1 ctaggattgt aatgatgata cgatgggacg tcttgccatc tgcagaggtg cattcaaaaa
       61 ttctcgattt gaaataatta atatctagta gattacaaag cacagttgat tgacaatttt
      121 ttctctaggc tgacatagta acaatagtca ttaggcaagt tgaaatgatt catattaaaa
      181 tcaaacataa agtttgaaaa gccgtaaagc attgaaaaag taaacaattg acaatacaca
      241 gttagctatg ttttgttacc tttaagagga tcagtatgtc ttttagagcg gataggacag
      301 ctgtcgcgtt caacttctac gtagatcttt gaaggggtag caaggtttag aacttgcctt
      361 actctctctt ctatagagtc tatgacaagt tcaatgctgt ctgtattcat attatcagct
      421 aggctcacat ccattgcaac cagaacatcc ttcggcccaa aatgcatggt ccgaagtgag
      481 atgacgcgat tgacctcctg tatgcgaagg acggattcaa ttattctatt gtaatctctc
      541 tttgagatag cctcacctat caaaagggct ctgttttctt tagctaggaa gaaagcaaat
      601 agcatcagta ctattcctat tgctacagaa cttagcgcat catatatcgt atttccggtc
      661 aaatccgaca agtatagccc aacagcggcg atacccagac ctaggagagc agccgaatct
      721 tcaaccatta ctgtaagaat tgtcggatct ttgctttcct gaaattctgt taaaagcatt
      781 cccagagaga atttttctcc tctcaattcg atagtctgtc tgaacaactt gaaagcaatt
      841 ctgagcgcat tcccttcaaa aactgcagaa ataagaagaa tgacgtagct tacacccaca
      901 ttctcgatat gggctattgg attatacaag gagccgaatc ccttttctaa ggaaagtatc
      961 ccagatatgc caaacagcat cgtggctacg acaaatgacc agaagaactg ctcttttcca
     1021 aatccgaaag ggtgcctctc gcttggaacc tttgtgcttg ttctaatgcc aattaacaat
     1081 aatacctgat tgaatgtatc cgaaaaggag tgataggtct cagaccacat agcgctactc
     1141 ccagtcatta tggcagctat catcttagct atggctattc caaggttgcc gaaaagcgca
     1201 gcgtaaactg cctttttgga gccggcgacc aattattttc tcctaaatcg gctgaacccg
     1261 cccttctgtc ttaacgagaa gaaacacgga attaaagatc aatgatctcc ttcataaaga
     1321 tattcggatc catgctagaa aaaataccaa gatctatcct tccaccttta gacataactt
     1381 ctttcaatag ctttgctgcg ccttcttcat tccaccagcg ctcgccaaat ctatctttta
     1441 ggtaagtttc taactcggcg gctctagacg cggccattag ataacttggc acgtacatga
     1501 tagcttcggg aagaatatga tgtaacatcc aatactggcc aggaatttta aatccagtat
     1561 acttcttgat caatcgctca taaagttgac tagcttggtc aatagataag tccttcctcc
     1621 agaattccat tttcataagg gaattagccg aataaaacgt gacaaaaaat aattccataa
     1681 atttgttcct ttcgatgagt ttatctaaaa gtttctcgtc ccgtacgcct agcacagaat
     1741 tcagatatga tgggttcatt gttagtcgtt caaggaatat tgaaaatatc tctgcaattc
     1801 ccatcggaaa tttgtatttg ttagcatagc ttagattagt gtctatggtt gcggcatgaa
     1861 ctgcgtgtcc tgtctcatgg taacagcctt gaagatcaaa gtatggactt tcactcttgt
     1921 acaaaaccct aatgtcattc gggattttga cgaagaagca tataggtgaa gggtattttg
     1981 ttggtcgatc ctccacatca aatgatatcg cagacaaatc aaagcccatt gattttagag
     2041 tccttttaac agccattact gggtcaactt tcgcaaaggg tttttccacg tctctaaaaa
     2101 ttctgtttcg gaaataataa aaatcgtcgt aatactctgg tgttcttcca ataatctgtg
     2161 aggctagtga cagagagtga gcgaacggcc gtcttgcacc ctctcccatc ttagtcacaa
     2221 gtctctttaa ttgggaatat gtgacttgct cactttcaag gtagctcgat aatggatcaa
     2281 ggtttgagcg ataactattt ttaactaaag gattatcctt ttttgaaaac caggaaaata
     2341 aatttcgtat tatgttgaat cttttttcaa tcgtaggtgc aataaaatgg gtttttgcga
     2401 tgaattcatc gaaaacagat tttcttgcct tgatgtcgtc ctctgcactg ttaaattgtc
     2461 tccaagtatt ccagttaact cgtgcattct taattctgta tttcccatta gtgctgatta
     2521 tctttt
//
LOCUS       DASSIK010000063         2001 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_807047, whole genome shotgun sequence.
ACCESSION   DASSIK010000063 DASSIK010000000
VERSION     DASSIK010000063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2001)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2001)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2001
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_807047"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(792..914)
                     /locus_tag="VFI64_01175"
     CDS             complement(792..914)
                     /locus_tag="VFI64_01175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241928.1"
                     /translation="MPYWTQLTGTRMEEDGRISFTSTLGYAVDEYVSFLEMWDF"
     gene            1301..1516
                     /locus_tag="VFI64_01180"
     CDS             1301..1516
                     /locus_tag="VFI64_01180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241929.1"
                     /translation="MPSHTSIKDSLKKLALDFQCSVCGAIFTTDEDRKQHLEKEAHGI
                     LHEGTTKKDKDIAKIQEEENETYSHRM"
     gene            complement(1709..>2001)
                     /locus_tag="VFI64_01185"
     CDS             complement(1709..>2001)
                     /locus_tag="VFI64_01185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241930.1"
                     /translation="INLSNSITNSAPSDIGTVNNTNRIYVAWTEGTGNKTNIFMTRSA
                     DDGDTFEKAIKLISSNSLNPKLIHISNENSTGLSWTEYGNQTEDVYFASILE"
BASE COUNT          651 a          363 c          340 g          647 t
ORIGIN      
        1 tccatcaacc aacttaaagc aaagggcttg ttcaaatccc cgacagtgat gaatgctaga
       61 tatcaaacgt gattaatttc cacagatttt tcttgacact tccagaattt tcattcctta
      121 ttttgatttc aaaaaaatat ccattagctg aaaatgttgc caaaaaaagg aaaatgaatt
      181 ttattagtta gcagatgcct ctagtatagt ttctgacgtg agtctacata agctgtagca
      241 attatcgcaa accatcttgt caaaccaata ctgaagtgaa tgtgtcttgt gtccgcatct
      301 atcacaacgc atagtacttc tcaaggcatt acattgtaac tatcaataga tataaaacaa
      361 ttctttctaa tattacacaa aagcatagta aaattacatt gttccgagat acagatcata
      421 atcctaacta gtgtgataga ttgaagttca ctgattatag acctatgcta ataatgttaa
      481 acaacggtga tgctcccaat cgacttattt tgatgtttat tatctttaac tggtttagtg
      541 ctaattaatc caaacacgtg tcttggtaag ttttaatgtc gaattggaag gaaattggtg
      601 taatatggta tgaagctcat atggccagtc ccgacaataa gtagaaccga aaagaaacat
      661 agcacaattg acatatcggc ttcacttatt ttatcagctt gtagttactc ccagcaattc
      721 tgtaaaatca gacgataata agacatcgat acctttgtac tccaaactag attaacaaag
      781 ttaagtaatc attaaaaatc ccacatttca agaaaactca catactcgtc cacggcataa
      841 cccagggtgg aggtgaaact gattcgtcca tcctcctcca ttctggtacc agttaattga
      901 gtccagtaag gcattttgaa attaatctaa gaacactttc ctcgtcattt ctgatcaaat
      961 agtagcaatt cccacaagcc tgtctgtgaa gaaacattct aaggtattgt gttttttcgt
     1021 tacaaacttc acaacgtatc tctgacttta tcaatattta tagtgcgtca atattacggt
     1081 cagagattta cttaagtctt tagtatgatg aattttaatt attcttcact gacattcaaa
     1141 tgctccagat tgctaggacc tattctgtaa tactggatgg ctttatacat cagggagtat
     1201 aatcagatac aaatattaga tctgccataa agacataaaa gttatgccct gttacaattt
     1261 gcagggataa tttccatgtc tagtaggaaa gacaatacga atgccgagtc atacgtcaat
     1321 caaagatagt ttaaaaaagc ttgccttgga ttttcaatgt tctgtctgcg gtgctatatt
     1381 tactactgat gaagatagaa aacaacattt agaaaaagaa gctcatggca ttcttcatga
     1441 agggacgacc aagaaagaca aggatattgc caaaattcaa gaggaagaaa acgaaactta
     1501 ttctcatcgt atgtgactgg gtattatatg tccatgacta ttggcagtag caattaatat
     1561 tatttagcat aatcttttgt ctgactggta gtttacttgt ctagaccttg actatcaaag
     1621 tgggatctga caattactag acttacatcc attgagatac actgaaaacc ctcacattag
     1681 agtcccaaga aagatacttc gatatttttt attccagtat acttgcaaag tagacgtctt
     1741 cggtttgatt accatattca gtccatgata aaccagtgct attttcgttc gatatgtgga
     1801 tcaatttagg attgagggaa ttgctagaaa tcaatttgat agccttttca aatgtatcgc
     1861 cgtcatcagc acttctggtc atgaatatat tggttttatt gcccgtgccc tcggtccagg
     1921 caacgtatat tctattggta ttgtttactg ttcctatatc agaaggagct gagtttgtta
     1981 ttgaattact aaggtttatt g
//
LOCUS       DASSIK010000064         4612 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_406627, whole genome shotgun sequence.
ACCESSION   DASSIK010000064 DASSIK010000000
VERSION     DASSIK010000064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4612)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4612)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4612
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_406627"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..263
                     /locus_tag="VFI64_01190"
     CDS             <1..263
                     /locus_tag="VFI64_01190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SBDS family ribosome assembly factor"
                     /protein_id="HET7241931.1"
                     /translation="QAKNVVDAIRKILPLKSETLELTVTVPAAYSAQSYNVFRSMGEC
                     KSEQWLSDGSLKVLLAINAGLKAALLDRLGAATKGSAQVVEG"
     gene            378..1181
                     /gene="rrp4"
                     /locus_tag="VFI64_01195"
     CDS             378..1181
                     /gene="rrp4"
                     /locus_tag="VFI64_01195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000178 - exosome (RNase complex)
                     [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exosome complex RNA-binding protein Rrp4"
                     /protein_id="HET7241932.1"
                     /translation="MQEVRRKFVIPGDIVVEGNSRPLVNVHKSGNNIIASRIGIAEVG
                     RDGAKVIPLSGVYIPRANDIVIGIIKDHSSLSWDVDINSCFSAHLPAQDLFGRDFSPA
                     RDDMSRELSSGDVVSARIATFDRTRDPILTVQDKDLGKIPLGELLKISATRVPRLIGK
                     RGSMIQTIEHATSTRITIGQNGLIVVSGKNKDGTQLAIKAIRMVEEEAHTSNLTQRIK
                     QLLGVEDNVQIDSKSRSGAPIDNDEGHDDSMLGDKKSVQSESESLSRDQ"
     gene            1184..1918
                     /gene="rrp41"
                     /locus_tag="VFI64_01200"
     CDS             1184..1918
                     /gene="rrp41"
                     /locus_tag="VFI64_01200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exosome complex exonuclease Rrp41"
                     /protein_id="HET7241933.1"
                     /translation="MTQTRSLIDENGIRTDGRTGNQLRDIQIKVGVIKNADGSALIEF
                     GKNKIIAAVYGPREVHPKHMALTDRCLLRCRYHMSPFSTDTRKNPAPSRREVEISKVI
                     REALQPALMLEDYPRATIDVYIEVLQADGGSRCAGIAAASVALADAGINMRDLVSACA
                     AGKVDDKIVLDINDTEDKEGGADMPVAFMPNHKQITLLQLDGKLNSEEFIACLNEGIT
                     GCMKVYEVQRSALMQKYFGNETELKE"
     gene            1922..2749
                     /gene="rrp42"
                     /locus_tag="VFI64_01205"
     CDS             1922..2749
                     /gene="rrp42"
                     /locus_tag="VFI64_01205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000178 - exosome (RNase complex)
                     [Evidence IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exosome complex protein Rrp42"
                     /protein_id="HET7241934.1"
                     /translation="MSSSRRSTIILENLRKNQIRELIASGKRLDGRSPDELRPLNIEI
                     GVIKKANGSAWVKLGNTEVVAGVKVETGEPFEGLENKGALIVSAEVLPTAASYIEPGP
                     PDEETIELARVVDRGVRESEMLALDKLALIPGKIVYTIFVDCSIINMGGNLFDATSYA
                     VVLALATSKIPVFEIIDEKVVDTGKIQDPPINTIPVSVTFARIGDSLVLDPSTEEEAC
                     MDARITLTTNSNGEYTAVQKGSNGFLTIEQVKSAAETAKIKGQELRLKFQELTTTGQ"
     gene            2823..2984
                     /locus_tag="VFI64_01210"
     CDS             2823..2984
                     /locus_tag="VFI64_01210"
                     /inference="COORDINATES: protein motif:HMM:NF013905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241935.1"
                     /translation="MIYRTLKKKRRCPMCGSLHFGRMAVGIWHCPKCKYKLAGGAYDV
                     NLEKIRSSR"
     gene            2938..3222
                     /locus_tag="VFI64_01215"
     CDS             2938..3222
                     /locus_tag="VFI64_01215"
                     /inference="COORDINATES: protein motif:HMM:NF020899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KEOPS complex subunit Pcc1"
                     /protein_id="HET7241936.1"
                     /translation="MAHTTSISKKYEAHAKIKIRIYSVPIDLSCKIAESMCAALKPEV
                     KLLNCGEKIEIKSLGAVVDIVIHAKDIVSMRAVVGSYMRLVQTAYGCLCA"
     gene            3282..3686
                     /locus_tag="VFI64_01220"
     CDS             3282..3686
                     /locus_tag="VFI64_01220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prefoldin subunit beta"
                     /protein_id="HET7241937.1"
                     /translation="MSEQEIPPWLREQLSRLQQLQQNLQAILMQKQQIEVESIETTKA
                     LEELMKLGEEDVVYKSAGPLLMKTKKNDALKELEEKKELSNTRLMVLGKQEARVKENL
                     KEVENKINEMIRIGQGQTGSDLGSGGTPVSGS"
BASE COUNT         1511 a          809 c         1038 g         1254 t
ORIGIN      
        1 atcaagccaa aaatgtagta gacgcgataa gaaaaatatt gcctctgaag tctgaaaccc
       61 tggagctcac tgtgactgtg ccagcagcgt attcagccca gtcatacaat gtttttagga
      121 gcatgggcga atgtaaatcg gagcaatggc tttcagatgg ttcacttaag gttctgcttg
      181 ccattaacgc tggtttgaaa gccgcactct tggaccgttt aggtgcagct acaaagggat
      241 cggctcaggt agtagaggga taagatcctt tctgtcacat ttagaatata agtcggatgg
      301 aattgacaga attaggttga aagaaatgga taatgtactt ttgttagatg atatagttac
      361 ggagtgttat tattcaaatg caggaagtta ggagaaaatt tgtaatccct ggggacatag
      421 tagtagaagg aaactctaga cccctagtta atgtgcataa atctggaaat aatataatag
      481 ctagcagaat tgggattgcg gaggtaggga gagatggagc taaagtaatt ccattatcgg
      541 gtgtttatat tccaagggca aatgacatag ttatagggat aattaaggat cattcttctc
      601 tatcttggga cgtggatata aattcatgct tctcagcaca ccttcctgct caggatctat
      661 ttgggagaga tttttctcct gcgagagatg acatgagtcg tgaattatct tcgggggatg
      721 ttgtcagcgc aagaattgcg acctttgata ggacaagaga tccgatcctc acagtccagg
      781 acaaggatct aggaaaaata ccacttgggg aattactcaa aatttctgcg actagggttc
      841 ctagacttat tggaaaacgg ggatctatga ttcagacaat agagcacgca acgagtacaa
      901 gaataacaat aggacagaac ggtttgattg tcgtatcggg caagaacaag gatggaactc
      961 agcttgccat caaagctata cgaatggtag aggaagaagc acacacgtct aacttgaccc
     1021 aaagaataaa acaactgctt ggggttgagg ataatgtgca gatagattca aaaagcagaa
     1081 gtggtgcccc cattgataat gacgaaggac atgacgattc tatgctaggc gacaagaaat
     1141 cagtacagag tgaatcggag tcactgtcaa gagatcaata gacatgactc aaacacgaag
     1201 tttgatagac gagaatggta taagaaccga cggtcgtact gggaatcaat taagagacat
     1261 tcagattaag gttggagtca taaagaatgc agacggttct gctttaatag aattcgggaa
     1321 aaacaagata atcgccgctg tatacggtcc tcgtgaagtg catccaaagc atatggcact
     1381 aactgatcgt tgcctcctgc gatgtcgata tcatatgtct cctttctcta cagatacacg
     1441 taagaaccca gctccttcga gaagagaagt agaaatttca aaagtcatca gagaagcttt
     1501 gcagccagca cttatgttag aggattatcc aagagcaact atagatgtat acatcgaagt
     1561 gctccaggct gatggtggtt caagatgtgc aggaatagct gctgcttcag tagctctggc
     1621 agatgcaggt attaatatgc gtgacctagt ctctgcttgt gcggctggaa aagttgacga
     1681 caagatagtt cttgatataa atgataccga ggacaaggaa ggtggggctg atatgcctgt
     1741 tgcctttatg ccaaatcata aacaaatcac tcttcttcaa cttgacggta agctaaatag
     1801 cgaggagttt attgcgtgtc tgaatgaggg tattaccgga tgcatgaagg tctatgaagt
     1861 tcagcgttca gctcttatgc aaaagtattt tggcaatgaa acggagttga aggaatagca
     1921 attgagctcc tcaagaagat ctaccataat tttagagaat cttcgcaaga accaaataag
     1981 ggaattgatt gctagcggaa aaagacttga tgggagatct ccggatgaac ttagacctct
     2041 aaacatcgag ataggcgtaa tcaaaaaggc gaatggttca gcatgggtaa aattgggtaa
     2101 cacagaggtg gttgcaggtg taaaagtcga aaccggtgaa ccatttgaag gactagaaaa
     2161 taaaggtgcc ttgatagttt ccgcagaggt gcttcctact gcggcttcct acatagagcc
     2221 gggtccacct gatgaggaaa ccattgaatt agctcgagta gttgatagag gtgtgagaga
     2281 atcggaaatg ttggccttag acaaacttgc gttgattcca ggtaaaatag tttacactat
     2341 atttgttgat tgtagcatta taaacatggg cggaaatctt tttgatgcca cctcgtatgc
     2401 agtggtgtta gcgttagcca cttccaagat cccagtcttt gaaatcatag atgaaaaggt
     2461 ggtcgacaca ggaaagattc aagatcctcc tatcaatacg atacctgttt cagttacatt
     2521 tgcccggatt ggagattcat tggtattgga tcctagtacg gaggaagaag cctgtatgga
     2581 tgctagaata actcttacca ccaactctaa tggggaatat actgctgttc aaaagggttc
     2641 aaacggtttc ctaacgatcg aacaggtaaa atctgcagca gagaccgcaa agattaaagg
     2701 acaagaactc agactcaaat tccaggagtt gacaaccact ggtcagtaga cggaaacaca
     2761 aactgacagg actaaaggga ctgggaataa aatatggtgc atcggtgagg aaacgatatg
     2821 gagtgatcta taggactcta aagaagaaga ggagatgtcc catgtgcggg tccctccact
     2881 ttggccgaat ggcagtagga atttggcatt gcccaaaatg caaatacaag ttagcaggtg
     2941 gcgcatacga cgtcaatctc gaaaaaatac gaagctcacg ctaaaattaa gatcaggata
     3001 tattcagtgc ctattgattt atcttgcaag atagctgaat ctatgtgcgc tgcattaaag
     3061 ccagaagtaa aattactaaa ttgtggtgaa aaaatagaaa tcaaatcttt aggtgccgtt
     3121 gttgatatag taattcatgc aaaagatatt gtatcaatgc gggccgtagt tggttcgtat
     3181 atgaggctcg tgcaaacagc ctatggctgt ctatgtgcat aggttcttgt agtgtcaatt
     3241 aacggtatga atttatcctg gtatattgta acttcaggca aatgagcgaa caagaaatcc
     3301 ctccgtggct tagggagcag ctatcaagat tacaacaact tcaacaaaat ttgcaggcaa
     3361 tcttgatgca aaagcagcaa atagaagtcg aatctattga aactactaaa gcgcttgaag
     3421 agctaatgaa attaggtgaa gaagacgtag tgtacaaaag cgcaggcccc cttttaatga
     3481 aaacaaagaa aaacgatgcc ttaaaggagt tagaggagaa gaaagaacta tcaaatacaa
     3541 gattgatggt actgggaaag caagaagcca gagtaaaaga gaatctaaaa gaggtggaaa
     3601 acaagattaa tgaaatgatc cgtataggcc agggccaaac aggcagtgac ctaggttcag
     3661 gtggaactcc agtttcgggc agttgatatc attacgaact ttaccaagct actgaaccat
     3721 atgccatcgc ttagaacatc caaggaattg aaacatgcat ctaatcctca tatgttctga
     3781 ataactttga agtaactcca tcaaattatt ttttattgat taatcgagat agttattata
     3841 aattatcttc tcagccttgc ttcttttgag ggatatgcaa cttttaatta gtaaacatct
     3901 caactatagt gtccaatatt tcccaaactt tttgaattgt ttgttcgaat cattacaagc
     3961 taatgttacc ttatcccaga acaacaatag tataaatttt accaatcgtc ttcaaattct
     4021 aggaatagga taaagttctt aaaccaattt ctggactgtg ttgtttatca cacgcttcta
     4081 atctacgttg aaaaagattg tcagaacaca gtccgatctt cgcttttctg cggcgacctc
     4141 tctagttcaa tttcaatttc atgaatatta attccgcaac atcaatcatt tggacgaatc
     4201 gttttactat ttcggaccat atatagggat tagtttcggt tttccgtatt ttgtaccgac
     4261 ctacttgaag aataaacaag ccaaaatagt attacatgac atatattatc aaacatgaat
     4321 gaatatttag tgcactatcg ttctgattaa tagacaaatt attgttacta aagtctatca
     4381 actttgaatt tgtgtgcata tcggattgcc tctgtactca tttcccattg atagagggac
     4441 ctttttagca aatggtttga atattattta gatgctatat tataacgtcg agctcaggct
     4501 caagaatagg caacaagatt ttaggatgat gtgagtaaca catttcgtaa tatctgatga
     4561 catccagaaa agcttagttt tagattatct ctaatttcaa aaacatgcca aa
//
LOCUS       DASSIK010000065         3589 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1390321, whole genome shotgun sequence.
ACCESSION   DASSIK010000065 DASSIK010000000
VERSION     DASSIK010000065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3589)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3589)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3589
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1390321"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            596..1024
                     /locus_tag="VFI64_01225"
     CDS             596..1024
                     /locus_tag="VFI64_01225"
                     /inference="COORDINATES: protein motif:HMM:NF014470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HET7241938.1"
                     /translation="MDKTGFSNLCTTTNEVIFIRLGGDNHPLMFYSSAIMNIGGSEWI
                     IIGLMALFLLFGSKKLPEFSRMMGRVVGEYEKARMIAQREMAQSIPSQTASYHGPNIQ
                     GPVNSEREKLEMVAMSLGIESRNKNDDELRDLISDKIKNQ"
     gene            1099..2382
                     /locus_tag="VFI64_01230"
     CDS             1099..2382
                     /locus_tag="VFI64_01230"
                     /EC_number="1.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase"
                     /protein_id="HET7241939.1"
                     /translation="MSKASFDNSSASNTINPFENALTQLSETAKIIGLDNGLHQILAC
                     PKRVLTVSLPVRIDNGEIKVFIGFRSQHNDARGPFKGGIRYHPQVSIDEVKALSMWMT
                     WKCAVANIPYGGGKGGIICDPKNLSAGETERLTRRYAFAIADIIGPHTDIPAPDVYTG
                     GKEMAWIMDTYSMMKGNYVQPEVITGKPIAIGGSLGRNEATGRGLAITVREAAARLKI
                     NMKDSTVVVQGFGNAGQFSAQLVEEQGATVIAVSDSKGCVRNRNGISVVKLRKHKEET
                     GSVVNYPGAESITNDELLETDCTILIPAALENQITKQNAGKIKAKIVAEASNGPTTPD
                     ADKILFQNQILVIPDILANGGGVTVSYFEWLQNLRREYWTEQEVNNRLDTNITKAFAD
                     VYDIHDKNSVDMRKASMILAVNRVVEAIKIRGLWP"
     gene            complement(2459..2809)
                     /gene="erpA"
                     /locus_tag="VFI64_01235"
     CDS             complement(2459..2809)
                     /gene="erpA"
                     /locus_tag="VFI64_01235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HET7241940.1"
                     /translation="METTQEGELITISSKAAEKVTEFMKQENKDNLYLRVYVSGGGCS
                     GLSYGMGFEEKVDEDDAVINKNGVQVIVDSYSQKYLKGANIDYIESLMGSGFKINNPN
                     VTKSCSCGHSFSTE"
     gene            complement(2952..>3589)
                     /locus_tag="VFI64_01240"
     CDS             complement(2952..>3589)
                     /locus_tag="VFI64_01240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acyl-CoA synthetase"
                     /protein_id="HET7241941.1"
                     /translation="RGAKQAASHTGSLGGSFAVINGAFDQSGIISLDSYEELTGSLKA
                     LTWQPVPKGNRVAMVTNGAGPIIAAIDNFERLDLQLAQLSEETLHKLKEHYPATYVLG
                     NPCDVTGSANADDYRFAIQAFMDDPNVDIIMPWFVFQDDPLEEKIVEVLAEFQRQEKK
                     PILVGAMGGPFTTILSDRIEQSKVPVYHSVITWITGAGTLAKWAKIKEKTK"
BASE COUNT         1112 a          730 c          728 g         1019 t
ORIGIN      
        1 aaattaggtc atactcctga agttgttgta aagaagaaca ttaccctcaa aatcaattga
       61 atgtaaacct ttctgatctt tctgccttct accacaacta ctgatttatt caggaaatcg
      121 actcaaccat aatgtttcaa catcattgca ttgcgttact tcgatccaat tatgaatttt
      181 agttgggtaa aagattactc ttgtcatcgt actggctatg gtcacgttta tacggcgcta
      241 cgtatccaaa tactcgtgac caagtgtcga tttaaacaaa tgatgcgtaa tttaccacct
      301 ttttctacgt aaggattata actcctttcc ccgcttaaca aagtgaccaa ttttatttga
      361 taaaatgaaa aatgcagtaa attgtttagg caaatctttc ctttgaaatg atggaaatat
      421 tagatataat attagatcaa gaactaaaca gaacaataga cggtttctta ttttttaggg
      481 taggtaaaat gcatagataa aacattgcga atgttaagga aaaataaatg atctacgttc
      541 acttattata gtatccaaca gccccaattc aaggagacac tgtcgaagtc tctgaatgga
      601 taagactggt ttctcaaact tatgcacaac aaccaatgaa gtaatattta tacgccttgg
      661 aggggataat catcctctga tgttttattc ttcggccata atgaacattg gtggttcaga
      721 atggattatc attggattaa tggcactttt cttgctattt ggatcaaaga agttgccaga
      781 attttctcga atgatgggaa gagttgttgg tgaatacgaa aaggctcgaa tgattgccca
      841 gagggaaatg gctcaatcta taccttcgca gactgcttca tatcacggtc ctaatatcca
      901 aggtcccgtc aactcagagc gcgaaaagtt agagatggtg gcaatgtcac tcggaatcga
      961 atctcggaac aagaatgacg acgagcttag agatcttatc tctgacaaga ttaagaatca
     1021 gtgagaccca acatcaggta cggataacca gtctatctaa ttcaaacttt aaataagtga
     1081 gttttcgaca aaccctcaat gtcaaaggct tcttttgata atagtagcgc tagcaacaca
     1141 ataaacccgt ttgagaacgc tctcacccaa ctaagcgaga ccgctaaaat catcggatta
     1201 gataatgggc tgcatcagat tctggcctgt ccaaaaaggg ttctaactgt gtcccttcct
     1261 gttagaattg ataatggtga aatcaaggtc tttattgggt tcaggtccca gcacaacgat
     1321 gctcgtggtc catttaaggg aggcatcaga taccacccgc aggtcagcat tgatgaagtc
     1381 aaagctcttt ctatgtggat gacatggaaa tgcgcggttg caaatatccc ttatggtgga
     1441 ggcaagggag gaataatctg cgatccaaag aatctgtccg caggagagac ggagagatta
     1501 actaggagat atgcgttcgc aatagccgac atcataggac ctcacacaga cataccagcc
     1561 cctgacgtat acaccggggg caaagaaatg gcatggataa tggatacata ttctatgatg
     1621 aaaggaaatt acgttcagcc cgaagtcata actggcaaac cgattgccat tgggggttca
     1681 cttggaagaa atgaggcaac aggacggggt ctggctataa ctgtaagaga agcagcagcg
     1741 agactaaaaa tcaatatgaa ggactccacg gttgtagtcc agggttttgg taatgcaggt
     1801 caattctctg ctcaattggt agaagaacaa ggagctaccg taattgcagt cagcgattcg
     1861 aaaggatgtg ttcgcaaccg aaatggaata tccgtggtaa aattgagaaa acataaggaa
     1921 gaaaccggtt cggtagtaaa ttatcctggg gctgaatcga ttacaaatga tgagcttctt
     1981 gaaacagatt gtacaatatt aattccagcg gcgcttgaga accaaataac taaacaaaat
     2041 gctggcaaga taaaggcaaa gattgtcgct gaagcttcaa atggacccac cacacctgac
     2101 gcagacaaaa ttctgtttca gaaccaaata cttgtgattc cagatatatt ggcaaacgga
     2161 ggcggggtga cagtttcata ttttgaatgg ctccagaatt tgagaagaga atactggact
     2221 gaacaagagg tgaacaatcg tctggacaca aatatcacaa aggcttttgc agatgtttac
     2281 gatatccacg acaaaaatag tgttgatatg cgaaaggcaa gtatgatact tgcagtaaac
     2341 cgagttgtcg aggcaataaa aataagaggg ctctggcctt aagtaaatag aaaaagaact
     2401 aaaaacgaaa tatactaatt tagtacactt tttaatttga gggtctggcg gtacctaatt
     2461 actcggttga aaatgaatgg ccacatgaac agctctttgt gacgttcggg ttattgatct
     2521 taaatcccga gcccataagg ctttcaatgt agtcaatatt agcgccctta aggtatttct
     2581 ggctgtaact gtcgacgatt acttgaacac cgttcttatt aattacagcg tcatcttcat
     2641 ctaccttctc ttcaaatccc atcccgtatg atagtccaga acagcctcca ccggatacat
     2701 atacacgcag gtacaaattg tctttgtttt cttgcttcat aaattcagta accttttctg
     2761 ctgccttgga acttatcgta atcagctcgc cttcctgtgt agtttccatt aggattaatc
     2821 ccgttgataa aatataagaa tctttgtcca attttgagac cggagccctt ccgttctcac
     2881 agataaccta catgcatgga aatgtaaaat tcattccata cctgttcagc gagataatct
     2941 tatcaacata cctattttgt cttttccttt attttagccc acttggccaa cgttccagcg
     3001 cctgtgatcc atgtgatcac tgaatggtat actgggactt ttgactgttc tatcctatca
     3061 gatagtattg tggtgaatgg accacccatg gcacccacca atatgggttt cttctcttgt
     3121 ctttgaaatt ctgctaacac ttcgactatt ttctcttcaa gtggatcatc ttgaaacaca
     3181 aaccagggca taataatgtc cacattcgga tcatccatga atgcttgtat cgcaaaacga
     3241 taatcatcag cgtttgcgga acctgttacg tcacagggat tcccaagtac atatgtcgca
     3301 ggatagtgtt cctttaattt atgtaatgtt tcttcgctta actgtgccaa ctgcaaatcc
     3361 aatctttcaa agttatctat ggccgctatt atcggcccag caccatttgt caccatggcg
     3421 accctatttc cttttggaac tggctgccaa gttagtgcct taagtgagcc agtaagttct
     3481 tcgtaactgt caagagagat tatacctgat tgatcgaagg caccattgat tacagcaaac
     3541 gaacctccca aagatccagt atgggaagca gcttgttttg cacctctca
//
LOCUS       DASSIK010000066         2676 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1095901, whole genome shotgun sequence.
ACCESSION   DASSIK010000066 DASSIK010000000
VERSION     DASSIK010000066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2676)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2676)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2676
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1095901"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..180)
                     /locus_tag="VFI64_01245"
     CDS             complement(<1..180)
                     /locus_tag="VFI64_01245"
                     /inference="COORDINATES: protein motif:HMM:NF013567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HET7241942.1"
                     /translation="MVESVKNNLHSRIAVIGIGGWGKNHARVLHDLGALAAVCDVSAE
                     RAKEIATLYDTTSYSS"
     gene            complement(174..1091)
                     /locus_tag="VFI64_01250"
     CDS             complement(174..1091)
                     /locus_tag="VFI64_01250"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transaminase"
                     /protein_id="HET7241943.1"
                     /translation="MKTKGAELVWFDGDYVKWEEAKVPVMTHALHYGTAVFEGIRAYA
                     TDNNLFVFRLRDHMQRLHRSADVYSIPIKYSVEELCNATVELIKKTSIKESCYIRPLT
                     FVGVHGIDLNVTKDSPTHTTIIIFPFAKYFKVEGISACVSTWRRIDGDSTPPMAKAAG
                     NYLNSILATQESKRIGFDESILLDRNGNVSEASGENIFLVRNSAIYTPQTSDSILEGI
                     TRDTTISIAKEMGYEIIERPISRTELYLADELFLTGTAAEIVAITKIDGHDVGSGKEG
                     LVTRSIRQKYEKLVSGKLKKYMDWLTPVW"
     gene            complement(1126..1776)
                     /locus_tag="VFI64_01255"
     CDS             complement(1126..1776)
                     /locus_tag="VFI64_01255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241944.1"
                     /translation="MEKIAALYLAHLNPVTKAHESIITNLAKQYNNVYVYPVIFFKSG
                     NEINTRTFPFSYEIRKTMLERLFDKFDNIKVLPDYSFVSPYIRYLPPFLSPSSWTLRK
                     QILGNVKEREFISYTGDTAERIALRMYNLHPIKSRRLEISASKVKELMYDEALSKMGR
                     STKQTETSLLWTDLVPERVVDVIKQSWHIIEQFAQMPDRTVKIIGMKFPSDGIVHF"
     gene            complement(1829..2167)
                     /locus_tag="VFI64_01260"
     CDS             complement(1829..2167)
                     /locus_tag="VFI64_01260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HET7241945.1"
                     /translation="MSEAESQQNAQAQQNAQAQQRDGPRDSIYIGKKPLMAYVTSTLI
                     QLANQPSVTIKARGLSIGRAVDVSQIILKRMENAGYKIGDVRIGSETVQAEDGRTRNV
                     STIEIEVKKV"
BASE COUNT          736 a          544 c          485 g          911 t
ORIGIN      
        1 tgaagagtaa gatgttgtgt catacaatgt ggctatttct tttgctcttt cagccgacac
       61 atcacaaacc gcagctaatg ccccaagatc gtgaagaact cttgcatgat ttttacccca
      121 accgcctatg cctattacag ctatccttga atgtagatta ttcttcacac tttctaccat
      181 actggtgtta accaatccat atacttcttt agcttgccag atactagctt ctcatatttc
      241 tgtctgatac ttcttgtgac taggccctct ttaccactcc ctacgtcatg tccatcaatc
      301 tttgtgatgg ctactatttc agctgcagtt ccagttagga atagttcgtc tgccaggtat
      361 aattctgtcc ttgagatggg tctttctata atttcatacc ccatttcctt ggcaatggag
      421 atagtagtat ctctagttat tccttcgagt atagaatcag aagtttgggg tgtgtagatc
      481 gcgctattcc ttacaagaaa gatattttca cccgatgcct cgcttacgtt tccgtttcta
      541 tccagtaaaa tggattcatc aaatccaatg cgtttgcttt cttgcgttgc aaggattgag
      601 ttcaaatagt tacctgcagc ttttgccatg ggcggagtag aatcaccatc aattcgcctc
      661 catgtagaga cgcatgcaga aattccctca actttgaagt atttggcaaa tggaaatata
      721 atgatagttg tgtgagttgg tgaatcttta gttacattta gatctattcc atggacacct
      781 acgaatgtga ggggacgtat ataacacgat tcttttatcg acgtcttttt aatcaactct
      841 acagtggcat tacaaagctc ttcaacggaa tactttattg ggattgaata aacatctgcg
      901 gacctatgaa gcctctgcat gtgatccctt agcctgaaga caaacagatt gttgtcggta
      961 gcatatgcac gtataccctc gaaaaccgca gtaccatagt gtaatgcatg agtcataact
     1021 ggtacctttg cctcttccca ttttacataa tcaccatcaa accagaccag ttctgcaccc
     1081 ttcgtcttca taaaaggcaa gtcgatgatt gcattataaa agtcttcaaa agtgaactat
     1141 accgtctgaa ggaaatttca tgcctattat ctttacagtc ctatctggca tttgtgcaaa
     1201 ttgttcaatt atatgccagc tttgcttaat gacatccaca actctttcag gcaccagatc
     1261 ggtccagaga aggctagtct ctgtttgttt ggtgcttctt cccatctttg ataaagcttc
     1321 atcatacatc aattccttta cttttgaagc agaaatttcc aaccttcttg acttgatagg
     1381 atgaaggtta tacatacgta aagctatcct ctctgcggta tcgcctgtat aagagatgaa
     1441 ctccctttcc tttacatttc ccagtatctg ttttcgtaat gtccatgaag atggtgaaag
     1501 aaaaggaggg agatacctga tgtatggtga cacaaaagag tagtctggaa gaactttaat
     1561 attatcaaat ttgtcgaata atctttccag cattgttttt ctaatttcgt aggagaatgg
     1621 aaatgttctt gtgttaattt catttccgct tttaaaaaaa attactgggt aaacatagac
     1681 gttattgtat tgcttagcaa gattcgtaat aatgctttcg tgtgctttag tgacaggatt
     1741 tagatgagcc agatagagag cggcaatttt ttccaagtat caattataca attatttcac
     1801 gtatatatga acaaaaagta taggagactt agaccttctt aacctcaatt tcaattgttg
     1861 aaacgttacg cgttctgccg tcctctgcct gtactgtttc agagcctata cggacatcac
     1921 ctattttgta acctgcattc tccattcgtt tcagaattat ctgtgagacg tctactgctc
     1981 ttccaatgct taagcccctt gccttaatag tcaccgatgg ctggtttgcc agttgtataa
     2041 gtgtggatgt aacataagcc atcagaggtt tctttccaat gtatatagaa tctcgtggtc
     2101 cgtctctttg ttgtgcttga gcattttgtt gtgcttgagc attttgttgt gattctgctt
     2161 cagacataaa aggtcataat ccaaaggata atttaaatct aaaagcagtt ttgtcctact
     2221 gaatctgcgt tcacgtagct acaatttggt aagccatagc cagtcggacc aatattgtag
     2281 caataaaact ttgcgacatc gccttaattt tctttgatgg tagaagagat ttctcatgcc
     2341 tctatctcaa tataattcca attcttacaa gcttttctag ttttcttatt gatccttcat
     2401 agtaaaatat tcctcattat attgaaattc aggagatgaa attcattggg cagggagtgg
     2461 catattggaa tgatcaaatg cgcattctgc gtagagaatt taaatccggt ttatactatt
     2521 tcgagataaa ggaatgacgg tatttcagga gttctcattt caaggtcgta aatcatcaat
     2581 cttattaaat taaattaaaa tgcttagtag taaactgact aaccatatta ctttcagatt
     2641 ttggagcctc cctccccctt tcaggtttgc ttgatt
//
LOCUS       DASSIK010000067         3417 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_112937, whole genome shotgun sequence.
ACCESSION   DASSIK010000067 DASSIK010000000
VERSION     DASSIK010000067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3417)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3417)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3417
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_112937"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(204..623)
                     /locus_tag="VFI64_01265"
     CDS             complement(204..623)
                     /locus_tag="VFI64_01265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241946.1"
                     /translation="MTTKLVAVSAIALATIMGIGLAIQSTSASHLPVIIERKAPVDIA
                     GDNIYVTWTTNKTGHDEVMFRVSTDAGKTFGDKIQLSDSRDADSVNVELGEDEGKVAV
                     TWWEHNQTSVEPVMKVSTDNGKTFGDKIMLSTKGAIG"
     gene            1350..2849
                     /locus_tag="VFI64_01270"
     CDS             1350..2849
                     /locus_tag="VFI64_01270"
                     /EC_number="3.4.17.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004181 - metallocarboxypeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase M32"
                     /protein_id="HET7241947.1"
                     /translation="MRFKNHVMNQILDAYKPMWSLNHAISLMGWDFETYMPTKGTEER
                     GVADSQLHMLHKDLLLNKDFVGLVESAKKLESLGDFEKGIVRVLDREITKQIKIPREL
                     TQAESLERIRGNMVWRKAREKSDYMMYAPHLKKMINIKKKIAEKIGYEKHPYDALLDL
                     FEEGLTVADLDKVFGGLTPRIEKILKKLVDSGSPFCEESKLGKPKYDIKRVDELNRDI
                     LALLQYDMKRFRMDVSTHPFTETMGLNDVRITTRYEGTDFKKSISSTIHEAGHALYDL
                     QCDKSLSFTPLQGGSSLALHESQSRFWENIVGRSLPFVHLIAPLIRKQVNFANHATDD
                     ELYLYFNNVKADYIRVDADEVTYNLHIALRYEIEKKIFGDELKISEIPEFWNDRMERL
                     LGVRPTRDSQGVLQDTHWSSGLFGYFPTYTLGNLISAIIASKMHKDLEDYEEDVKRGN
                     FKPIREWLRLKIHQHGSVYASKVLLKNSLNEGYNPDYFVTYIRTKYLGS"
     gene            complement(2905..3252)
                     /locus_tag="VFI64_01275"
     CDS             complement(2905..3252)
                     /locus_tag="VFI64_01275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase/quinone reductase family protein"
                     /protein_id="HET7241948.1"
                     /translation="MSKADLYQKLNRASEITLSVKGRKSGRDIPRPVWFVHEGNTIYL
                     LPNHGSDTNWYMNMLVDPTLRISVDGVRLPASGKPIKDTNRVDDILKKFQSKYGEVKR
                     YYTKLDVAVEVPI"
BASE COUNT         1038 a          632 c          689 g         1058 t
ORIGIN      
        1 aagtaggtta gttaaatgat ccaattagaa atttaatata gacagaattg agtgtcagtt
       61 tatcttattt tgtaggcctt caaacttaac ctaagggcat caaacagatc attttagcta
      121 gtctgttcct tgacgagaga atgttcatta gctgcaaatg aaaaaaatgt gtaaagttac
      181 gccgattaga cttgtattgg ttcttatccg attgctccct tggtggacag catgatttta
      241 tctccaaaag tcttgccatt gtccgtgctt actttcatga caggttcaac agaagtctga
      301 ttgtgttccc accaagtgac tgccactttc ccttcatctt ctcctaattc cacattaaca
      361 gagtcggcgt ctcgagaatc actcaattga attttgtcac cgaatgtctt tcctgcgtcc
      421 gttgatactc tgaacattac ttcgtcgtgg ccggtcttat tagttgtcca tgtcacgtaa
      481 atgttgtctc cagcgatatc tactggtgct tttctttcaa ttattactgg aagatggcta
      541 gctgatgttg attgaattgc tagccctatc cccattattg tcgcaagtgc aatagcactt
      601 actgctacta attttgttgt cattaaccaa tatccaatta agtattataa aactagttcc
      661 aaccccgagt agaaattaat taatcttgta tcctttttgg ggaaagtctt agtgcatgtt
      721 aaattagttt atcaaacttt tctggtattg tcagatattc cttgtttacg aataagtgaa
      781 gattagatag caaagactta tggacaaaaa attctagtag gctgtagaca ctcgaccccc
      841 caaagcggga tttgccagga tgtgctaata agtagtaact gcctaaatcc acattccatt
      901 cgatcccctg tgaggttgga ataagaaggg attcgtaaat aacaaagttt tatgactttt
      961 ctttcacaag caatgtccaa ggccttaagt tgggaaatcg ttgcttggaa tagatgaagc
     1021 attattagtc ttttattgat atcacagttt cattttctga atttatctat aaatccacaa
     1081 gtctgctatt tacaattttg tcattcatag ggccatggaa tgtggattag atgtttaaga
     1141 aattatggat tagcagatga atctgtatga attctgaatt ctatctatct tcaagtcttc
     1201 cggtctaatg ttaaatcttg attcatgcca aggacattga actatgtgat tttcactcta
     1261 atccaattac cttgattttt caaagttgga atcctagcta gcaatgatta atagactgat
     1321 gcggttgagt tcatggcgga tgtaacgaca tgagattcaa gaaccatgtc atgaatcaga
     1381 tcctcgatgc ctacaaacca atgtggtcac taaatcatgc catctctcta atgggttggg
     1441 attttgagac ttatatgcct acgaaaggca cggaagaaag aggagtagct gattctcaac
     1501 ttcacatgct gcataaggat cttctcttaa acaaagattt tgttggtctt gttgagtcag
     1561 cgaagaaact ggagagcctt ggcgatttcg agaagggcat tgtgcgagta ctcgataggg
     1621 aaataaccaa gcagatcaag atacccagag agttaacaca agcagaatcc ctggaaagaa
     1681 taaggggcaa catggtatgg aggaaggcga gagaaaaatc tgattacatg atgtatgcgc
     1741 cccacttgaa gaaaatgata aacataaaga agaaaatcgc tgagaagata ggttatgaaa
     1801 agcatccata tgatgccctc ttggatttgt tcgaagaagg ccttacagta gctgacttgg
     1861 ataaagtatt cggtggattg actccgcgta ttgagaagat tctgaaaaaa ctcgtagatt
     1921 caggcagccc gttttgcgaa gagagcaaac ttggaaaacc aaagtatgat atcaaaagag
     1981 ttgacgagct caatcgtgat attttggctc tcctgcaata cgacatgaaa cgtttcagaa
     2041 tggatgtatc tactcatcct ttcactgaga caatgggcct caacgacgtc agaataacta
     2101 ctcggtatga agggactgat ttcaaaaagt cgatatctag tactattcat gaagctggcc
     2161 atgcactgta tgatctgcaa tgtgataagt cattgtcctt tactcctctt cagggcggat
     2221 cttcgcttgc gctccatgag tctcagtcaa ggttttggga gaatattgtg ggcagaagcc
     2281 tgccttttgt tcatttgata gctcccttga ttagaaagca agtaaatttc gcaaaccatg
     2341 caacagatga cgagttgtat ctgtatttca ataatgtcaa agctgattat atacgagttg
     2401 acgccgacga agttacttac aatctccata tagcattaag atatgagata gaaaaaaaaa
     2461 tatttggaga tgagctcaag atctctgaga ttcctgaatt ctggaatgat agaatggagc
     2521 gcctgcttgg agtgagacca acaagagatt cacagggagt acttcaggat acacattgga
     2581 gcagtggcct ctttggttat ttcccaactt acactttggg aaacttgatt tcagctatta
     2641 ttgcttcaaa gatgcacaaa gatctggagg attacgagga agacgtcaag aggggtaatt
     2701 tcaagcctat cagagaatgg ttaagattaa aaattcatca gcatggatct gtttatgcat
     2761 ccaaagtgct tcttaaaaac agcttaaatg aaggctataa cccggattat tttgttacct
     2821 acataaggac taaatacctt gggtcctgaa gcctagcata ttttgattaa agctatatta
     2881 tgattcaaac ttacaggaca tgagtcagat agggacttct acagctacat ctaatttcgt
     2941 ataatatctt ttcacttcac catatttaga ttggaatttt ttcaggatat cgtcaaccct
     3001 attagtatct ttaattggtt taccacttgc gggtaatctt accccatcca cagaaatcct
     3061 caaggttgga tcgactagca tattcatata ccagttagtg tctgaaccat gatttggaag
     3121 caaatagata gtgttgcctt cgtgaacaaa ccacacgggc cgagggatat ctctgcctga
     3181 ttttctacct ttgacgctga gtgttatctc agatgctcta tttagtttct gatagagatc
     3241 ggctttggac atgtcaatct atgctacata tatcagatat gggtttgtgt tatgtgtgat
     3301 aaagactgag acagtttcgt ccataactca tataaatcaa ccattgcaaa aaataaaagt
     3361 tatggttcta acagaaaaaa ttagacaggg tcttctttgc ctattacttc accacca
//
LOCUS       DASSIK010000068        10261 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_508198, whole genome shotgun sequence.
ACCESSION   DASSIK010000068 DASSIK010000000
VERSION     DASSIK010000068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 10261)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10261)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10261
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_508198"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(114..1355)
                     /gene="dnaG"
                     /locus_tag="VFI64_01280"
     CDS             complement(114..1355)
                     /gene="dnaG"
                     /locus_tag="VFI64_01280"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: protein motif:HMM:NF003108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase DnaG"
                     /protein_id="HET7241949.1"
                     /translation="MPNTGIVKYHVKLKFEVDGLVEKADIIGAIFGQTEGLLGPEMNL
                     NELQKVSKVGRIEVNVDSKSNMAKGDALIPMSTDISTAALIAAAIESIDKVGPFQAKF
                     SLVGIDDIRAIKKKIIVDRAKKIVQEWATKTISEGEEMLRDVYDASKPGKLTTFGNAQ
                     LACGTGVFESPLIILVEGRADVINLLRAGFDNAIAIEGAKIDESVTKLTSGKKVIAFL
                     DGDRAADLILKELHGLVNIHKVLRAPPGKEVEECTPLEISEILKEIAEPAQDQQVTVH
                     QQYPKSDRKQQSKYEPRDSEYRRPHNHDEKTKQLIENNPEILSTVKEVFPQINETLEA
                     VVLDNSMKTLLKIPVSDIVKKLDTAEGGKILVMDGIITQRLIDAADKVGIEYIVGHRT
                     GELKKSTDINIITFSQMGVGN"
     gene            2417..3223
                     /locus_tag="VFI64_01285"
     CDS             2417..3223
                     /locus_tag="VFI64_01285"
                     /inference="COORDINATES: protein motif:HMM:NF012355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupredoxin domain-containing protein"
                     /protein_id="HET7241950.1"
                     /translation="MSDWDLLTPGIGLTSIGIVGVGISLSGIAKTFMDGMHAVSLLTL
                     YIGMILLVSGLFKDGFPSSGKAKSATFITLGFLVTFGFAGAITIGAQVPSIFAYIGLM
                     LIISIPATVLCVASYKRTPYFKALAIIFIGAAVVGGSTFYAFGLVAPKIPQVENAALV
                     KPESTTPAKNITKLINATILPGASAQGNPSYDPGNVKVSKNGEGVQWTDKDNVPHTVT
                     SLKDDGKTFDSSIIKPNSTFVLDASGLATGEYAYFCTLHPYMKGLLTVTN"
     gene            3477..3821
                     /locus_tag="VFI64_01290"
     CDS             3477..3821
                     /locus_tag="VFI64_01290"
                     /inference="COORDINATES: protein motif:HMM:NF025819.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M67 family metallopeptidase"
                     /protein_id="HET7241951.1"
                     /translation="MPYEACSLLLGISSPYKFLVKELYPMRNVDLSETAFKMELPDLI
                     SAYEYSSEKKLNVIGVFHSHCLGTAPSKKDLTYMELNPVVWLIYSVDDCKFGAYKMNR
                     TLEKVLLDIVTE"
     gene            complement(3811..5106)
                     /gene="aspS"
                     /locus_tag="VFI64_01295"
     CDS             complement(3811..5106)
                     /gene="aspS"
                     /locus_tag="VFI64_01295"
                     /EC_number="6.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004815 - aspartate-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006422 - aspartyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA(Asn) ligase"
                     /protein_id="HET7241952.1"
                     /translation="MSKCENERIFAICLGEQPLGKKISVAGWIVDFTDIGKIGFVKVR
                     DVTGTVQGVVTGDVLARTREIPRQSSVLIKGIVSKTKAKNLPVEIAVDDVIVNGKAVH
                     PLPIDPTGRIESSMDKRLDCRALDLRNEHVLTIFKIRSEAVNVIRNVLRSRMFIEVNT
                     PKIIGSATEGGANLFELDYFKRKAYLAQSPQLYKEQLTLGLERVFEVGPYFRAEPSHT
                     VRHLSEFISIDLEAAYLDYNEIMDIVDELIMSTIESLRTLFPVDIKSTNYYYGNSIES
                     GIPRLSYEECLNELNQSGEHLEFGDDLSDAALRTLGTIHNGFYFIKDWPTKLKPFYIQ
                     EHEGRKDLSKSFDLQFGYLELISGGTREHDPNNLRNKLMEQGLSTESFSHHLRAFDWG
                     MPPHSGCGIGFDRLMMVLTSSDNIREVVLFPRDSDRLTP"
     gene            complement(5111..5620)
                     /locus_tag="VFI64_01300"
     CDS             complement(5111..5620)
                     /locus_tag="VFI64_01300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241953.1"
                     /translation="MKTPICSFDAKTGILCSLCENKLKNGRLTQEDVEVSIRLTKLSG
                     KNQELDKLTLVNSRKVDDDFVLFFRSSDIVLLRSSEKMASTIEKEFHGKVWIMEADSS
                     PRKFLENLFFPIRISNSNMIWLPGGQKVTQVTISGKDYAKISQKVDKIKLIAEKIKEI
                     ELMVQVSEE"
     gene            5777..6763
                     /locus_tag="VFI64_01305"
     CDS             5777..6763
                     /locus_tag="VFI64_01305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HET7241954.1"
                     /translation="MGQAHIVHRSDITVLEPLLTIKGLKVYYFSRSNIVKAVDDVCLE
                     ILHNGSLGLAGESGCGKTTLGTALLRSISSPGRIVEGSIILNGKDISTISDRDFDRLI
                     RWKKIAMVFQGAMNSLTPVFTVGKQMKEILDEHQFTGNVSNAISESLSQVLLDDSIVG
                     KYPHELSGGQKQRIIIAMALLLKPQILIADEPTTSLDVIVQAQVINLFKRLKKTGLSI
                     IFISHDLSVISELAETVGIMYAGQLVELGSTRAVYSNPKHPYTQKLIATIPRIKDKDN
                     SLQFLKGKPPDMADLQKGCRFLDRCSFAMEVCNKDPPFFEYENVKVRCWLYK"
     gene            7177..8262
                     /locus_tag="VFI64_01310"
     CDS             7177..8262
                     /locus_tag="VFI64_01310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-1,6-bisphosphatase"
                     /protein_id="HET7241955.1"
                     /translation="MKVTVSAIKADIGSIGGHTRPSDELLESVKKTVKEHAQNLYDYY
                     VGFTGDDIHIIMSHAKGPDNKEIHKLAWDAFTEATKIAKGQGLYGAGQDLLKDAFSGN
                     VKGMGPGVAEIEMEERPSEVFSIFAADKTEPGAFNFPFWRMFVDARSSTGLLINESLA
                     EGVLFRIMDVMSGKVADLKMWQDKPELEAALMYPGRYVVHSVFSYDGEQILSASTDRL
                     HNIAGTYVGKDDPIAIVRTQKNFPATEEAGSAFNEPHFVAGNTRGSHHMPLMPVKVNS
                     SASINYSIPIVSCLVFSMHNGVFTGPHDGFGTVDWDLQRMWAAERAMIMRNQGFVHPA
                     TLVPEELEYNKGYEARMAKLNNKFKEL"
     gene            8283..8960
                     /gene="tpiA"
                     /locus_tag="VFI64_01315"
     CDS             8283..8960
                     /gene="tpiA"
                     /locus_tag="VFI64_01315"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004807 - triose-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HET7241956.1"
                     /translation="MKLFSRPLIINLKNYLEIGGNDSIKFARKATGVQKKYDVDIIIS
                     PPISSLLAVSNITKLPVVSQHVDDEYVGPSTGFTVPEIIKSCGAVGSIINHSEHKIDL
                     LTVKNLIKRLRGLNLISIVCAADVGEVNKISSFSPDYIAIEPPELIGKGIAVSKANPS
                     IISMSVKAVRNNSTTTRVLCGAGIVNKSDVTKALELGADGILVASGIIKSSSWYHKIE
                     ELSSAFV"
     gene            complement(8998..9258)
                     /locus_tag="VFI64_01320"
     CDS             complement(8998..9258)
                     /locus_tag="VFI64_01320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241957.1"
                     /translation="MKDARLVKILVEEKSLVKLLKTIGRGREYATRELLTKLGAYGYG
                     HKLLLKAQKRGLVERKTVKNKVFNKLTSDGKKIVMIAKEIGV"
     gene            complement(9639..>10261)
                     /locus_tag="VFI64_01325"
     CDS             complement(9639..>10261)
                     /locus_tag="VFI64_01325"
                     /inference="COORDINATES: protein motif:HMM:NF014342.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HET7241958.1"
                     /translation="KKLKPHAAFLAAAGAITDYLETKPKASTIVSKYDRQFLMLEASA
                     LSYMISSGQHETEFLSAIIEKLSDMKYPHDIEEGFDRAKKYAQKVSNAVKSIEDRISI
                     GNHLAYLESNVELSSSLIVNFVLGLSGKSVALVYRFKADINSYIISIRGSKECMVHLG
                     RAVNSISSDLGGSGGGHDRACGAVIPKERMKTFIEKLDAVISNNKN"
BASE COUNT         3069 a         2026 c         1938 g         3228 t
ORIGIN      
        1 tctcagtagc aatacttgtg gatgtagctt ctataaattc cctgccagct cccttagtca
       61 ataatttggc aagagtgaca atatattcta gtttgatgtg ccgcatttca tttttaatta
      121 cctacaccca tttggctgaa tgtaataatg ttaatgtcgg tggatttctt taattctcca
      181 gttctgtgtc caacaatgta ctcgattcca accttatctg cagcatcgat taagcgttga
      241 gttatgatgc catccattac tagtattttc ccaccctctg cagtgtcaag cttcttgact
      301 atatcagaga caggtatttt caatagtgtt ttcatagaat tgtctaatac tacagcttcc
      361 aaggtttcgt tgatctgcgg aaatacctct ttcactgttg acaaaatttc agggttattt
      421 tcgatcaact gcttagtttt ttcgtcatga ttgtgagggc gtcgatattc gctatcacga
      481 ggctcatatt tcgattgttg ttttctatca gatttcggat attgctgatg cacggttact
      541 tgttgatcct gggctggttc tgctatttct ttgagtattt ctgaaatctc taagggagtg
      601 cattcttcta cctccttccc aggaggcgct ctgagtacct tgtggatatt aacaagaccg
      661 tgtaattctt ttaaaatgag atccgctgcc ctgtccccat ctaagaatgc gatgactttc
      721 ttacctgagg ttagtttggt aacactttcg tcgatcttgg ctccctcaat ggcaattgca
      781 ttgtcaaagc ctgcacgtag tagatttatt acgtccgccc taccttcaac caaaattata
      841 agcggtgatt caaacactcc agtaccacag gcgagttggg cgttaccaaa cgttgttagt
      901 ttaccgggct tactagcatc atacacgtct ctcaacattt cttctccttc actaattgtt
      961 tttgttgccc actcttgaac tatttttttt gctcggtcaa cgatgatttt tttctttata
     1021 gctctaatat cgtcaattcc taccagtgaa aatttagcct gaaacggtcc aaccttgtct
     1081 atgctttcga ttgctgcagc gattaatgcc gctgttgaga tatccgtact catcgggatc
     1141 aacgcgtcac cttttgccat gttcgacttg ctatcaacat tcacttcgat cctcccaact
     1201 ttcgatactt tttgtagctc attgagattc atttctggac ccaataatcc ttcagtttga
     1261 ccaaaaattg cgccaataat gtctgccttt tctacaagtc catcgacttc aaattttaac
     1321 ttaacatgat acttaactat accagtatta ggcactttct aaccctcaaa ttgaataata
     1381 cgaagcttaa gtgcgtttgg ttgaatataa gtgctttgaa atacgtatgt gaatcgccaa
     1441 ttgtcataac ttgggagata tgacaaagtt ccatccaccg aacgctagat attccatctg
     1501 acttgagacc gtcttattta tattagacag ctgatgcatc gtgaagtgcg ctgttcgagt
     1561 actgtccagg ttcaaattga tgccggtccg aaatattttc caaattgatt ttttgaaaat
     1621 tttaatttca agattatgtt actattaaca aaaacaaagt ttaactactt cccaaatcgc
     1681 actttcgatt tagaaaaact ttttcaagag cggtttgttt tattcaaata cgatctcatt
     1741 acggttaagc cccccgcttg tgtactgtgt ttatcatcac tcgacgaatt tttaatagta
     1801 cattgattga tcacgttagc aatcttagag atatcggtcg actgaagggt tgatgccact
     1861 gagatgaaat atatttggtg taaagcatgt tggatgtcta agaaaatatg acaaacggag
     1921 gattgaagct caatgactcg aaggcggaat caaatagaac tagtacgtta gcgttattag
     1981 tacactagct aattcaggca taatctacta gtgaatactt tggttaatta gccactggga
     2041 gaataaaact ctacataaac gtaaacttgg cctcaattta cacacatgga gctgaggacg
     2101 atatgatatg cgtaataaca tgatagcgta cagataatgt cttccaagat cgattcgtat
     2161 ttaagaattc gtttgatatc ctaccacttc cacctcagag ataaatggat tcaatttttg
     2221 tcaaacattc aaggtccatt gattaacttc aaaaaaccct ctatgactcg gatttcattt
     2281 cgtgaacaga agcgcaaccg gcaaatatgc cctgatacag tgtcggctat cagatcgatg
     2341 atgtatctaa tctaaatagc ttgtataacg taagaaaaga ttaattatgc gaatttcgac
     2401 tctcctatca ttaacgatga gtgactggga cctcttgact cctgggattg gactaacttc
     2461 cataggtatt gtgggggtag ggatttcact ttctggtata gctaaaactt tcatggatgg
     2521 gatgcatgcg gtctcactgc ttaccttata tataggaatg attctgcttg tttcaggatt
     2581 atttaaggac ggatttcctt catcggggaa agcgaagtca gcaacgttca tcacacttgg
     2641 atttctcgta acattcggat ttgccggagc gataaccata ggtgctcaag taccgagtat
     2701 ttttgcatac attgggctga tgctgataat atcaattcct gcaacagtgc tgtgcgttgc
     2761 ttcttataaa aggacacctt atttcaaagc tcttgcaata attttcattg gtgcggcagt
     2821 agtcggggga tcaacatttt atgcatttgg actagtcgct cccaaaatcc cacaagtgga
     2881 gaatgcggcg ctagtaaagc cagaaagtac cacacctgcg aaaaatataa caaaattgat
     2941 aaatgctaca atccttcctg gggcttctgc ccaaggaaat ccaagttatg atcctggaaa
     3001 tgtaaaagtg tcgaagaatg gggaaggagt acaatggacc gataaggaca atgtcccaca
     3061 tacggtaaca agtctaaaag acgatggtaa aacattcgac tcttctatta ttaaaccaaa
     3121 tagtaccttt gtgttagatg cttcgggact agctacaggc gagtacgcat atttctgtac
     3181 attacatccc tatatgaagg gtttgcttac cgtgacaaat tgaaattctc agttaagacg
     3241 aagtgctagt tcacatttta actgttatta attgggagaa ttccctataa accaaggatt
     3301 cataatgaag aatggatttg aaaacgacgg cattgagaat tgcaatggtg attatgataa
     3361 aacggtacgt gaaataactg tcatctagta atgatgaagc aaacagtagt tgttaccaaa
     3421 cactagttgt taccaaggga cagctaaatg ctctaaagaa tcttgcattg tttcacatgc
     3481 catatgaggc atgttcactt ctcctaggaa tttcaagtcc atacaaattt ctagttaagg
     3541 aattataccc catgagaaac gtagacttat cagaaactgc cttcaagatg gaactgcctg
     3601 atctcatttc tgcatacgag tactcgtcag aaaagaaatt gaatgttatc ggggtttttc
     3661 actcgcattg tcttggaact gcgccatcga aaaaggattt gacatatatg gaattgaatc
     3721 cagttgtatg gcttatatac tcagtggacg actgcaaatt tggggcatat aaaatgaatc
     3781 gcacattgga aaaggtcctg cttgatattg tcacggagtg agtctatcag aatctcgtgg
     3841 gaaaagaacg acttcccgta tattgtcgga agaagttaag accatcatta acctatcaaa
     3901 gccaatgcca caccctgaat gtggaggcat tccccaatca aaggccctca agtgatgtga
     3961 aaaactctca gtgctaagac cttgttccat gagtttattt ctcagattat taggatcatg
     4021 ttcccttgtg ccgccagaaa ttaattccaa gtatccaaat tgcaaatcaa atgattttga
     4081 aagatccttt cgcccttcgt gttcttgtat ataaaaaggc ttcaattttg tcggccaatc
     4141 ctttatgaag taaaatccat tgtgtattgt ccctagtgtc ctgagcgccg catccgatag
     4201 atcgtcccca aattctagat gctctccact ctgattcagt tcgttcaaac attcttcata
     4261 tgataatctg ggaatcccgc tttcaatgct atttccatag taataatttg tgcttttgat
     4321 atctactgga aaaagggttc ttagactctc gatagtagac ataattagtt catctactat
     4381 gtccattatc tcattatagt caagataagc agcctcaagg tctatactaa tgaattcaga
     4441 aaggtgtctc acagtgtggg aaggctcggc tctaaagtaa ggtcctactt caaaaactct
     4501 ttctaaccct aatgtaagtt gttctttgta taattgagga ctttgggcaa gatacgcctt
     4561 tcttttaaaa tagtctagct caaacagatt agccccacct tctgtagcag agccaattat
     4621 ctttggtgtg ttcacctcaa taaacatcct tgatctaaga acattccgaa tcacatttac
     4681 tgcctcagaa cgaatcttaa atatagtcaa aacatgctca tttcttaaat caagagctct
     4741 acagtccaat ctcttgtcca tagaagattc aattcttcct gtcggatcta ttggcaaagg
     4801 gtggacagct tttccattta cgataacatc atccacagcg atctccacgg gtagattctt
     4861 cgccttagtt ttactaacaa ttccctttat caatactgaa ctttgtctag gaatctctct
     4921 tgttcttgca agaacatcgc ctgtgactac accctgtact gtgcctgtaa catctctgac
     4981 tttaacgaac cctatttttc caatatcagt aaagtccacg atccatcctg ctacactaat
     5041 ttttttgcct aggggctgtt cacccagaca aatggcaaaa attctctcgt tctcacactt
     5101 agacaatttt ttactcttct gatacctgga ccatgagttc aatttcctta atcttttcag
     5161 caatcagttt aattttgtca actttctgcg atattttggc atagtcctta ccagaaatag
     5221 taacttgagt aaccttttga cctccaggta accaaatcat gtttgaattc gaaattctta
     5281 ttgggaaaaa aagattttcc aagaattttc tgggagaaga atcggcttcc ataatccaaa
     5341 ccttaccatg aaattctttt tctatagtac ttgccatctt ttcgctagat cttaggagaa
     5401 caatatccga tgaccgaaaa aataatacaa agtcatcatc aacctttctg gaattgacca
     5461 gggtcaattt gtctaactcc tgatttttgc ctgagagttt tgtgagtctg atggatacct
     5521 ctacatcttc ctgtgttagc cgtccgttct ttaatttatt ttcacaaagg gaacacagaa
     5581 tgcccgtctt ggcatcgaat gagcaaatag gagttttcat taataattaa acaccgtatc
     5641 ccctctatgg ttccgtatca ttatatatcc tgtccgagaa agactctcgt aaatatcaaa
     5701 aacttatctt taggcagtag gtgcattacc cataaaatct ttatacccca taaaagtttt
     5761 attcgttcat tgagttatgg gacaagctca tatcgtacac cgtagtgaca ttactgtatt
     5821 ggagccactg ctgacaatta aaggtctcaa agtgtactac ttttcaaggt ctaacattgt
     5881 taaagctgtg gacgatgttt gcttagaaat attacataat ggatctcttg gacttgctgg
     5941 tgagtcggga tgtggtaaaa ctacccttgg cacagcactg ttaagatcaa tatcatcacc
     6001 aggtaggatt gtggaaggat cgatcatttt aaacgggaaa gacatttcca caatctcaga
     6061 tcgggatttt gacagattga tccgatggaa gaagatagca atggtatttc agggagccat
     6121 gaattcgctc acgcctgtat ttacggtcgg taaacaaatg aaagaaattt tggatgagca
     6181 tcaattcacg ggcaatgtct caaatgctat tagtgagtca ctgagtcagg ttttgcttga
     6241 tgactctata gttggaaagt atccccatga attaagcgga ggacagaagc aaagaataat
     6301 catcgcaatg gcattgttgc taaagcctca aatattaatt gctgatgaac cgacgacatc
     6361 tttagatgta atagtgcagg ctcaggtaat caatctcttt aagagactta agaaaaccgg
     6421 cttgtccata atatttattt ctcacgattt gagtgtgatt tcggaattag cggaaactgt
     6481 aggtataatg tacgcagggc aactagtcga actgggaagt acgcgagccg tttattcaaa
     6541 tcctaagcat ccatatactc aaaagctcat tgctaccatt ccacgaatca aggacaaaga
     6601 taattcattg caatttctaa aaggaaaacc acctgatatg gctgacctac aaaaaggatg
     6661 tagattcctt gatagatgtt cctttgctat ggaagtatgt aataaagatc cacccttctt
     6721 tgaatacgaa aatgtcaaag ttcgctgttg gttgtataaa tgacctccta tcaaagtcac
     6781 gtgcgacttt taattctgga caaaaagcaa aatgaggcga ttgaaatcag aagttcatga
     6841 gattttttgt caatggaaac taggacattt gagcgttggg attgataatt taatggatct
     6901 ctagtaatta tggctagtct ctggctaggg aatttttgtt aatagaaatt gaaacttggt
     6961 ccaccggtac atttatgctt ccagttgtca aactagtata gttatcatgc attttgagat
     7021 gcaaaataga ttcttagtta agctgaacta ctagaatatg catctacttt cagcgcgttc
     7081 tagacacaga taaaaacgag agcaaatacg gcaaatacga taagaagaaa attcaaatca
     7141 caagaatttt aaagtccacc aattaaataa cgcagcatga aagttacggt ttcagcaata
     7201 aaggcggata taggatctat aggtggacat acacgcccaa gtgatgaatt attggaaagt
     7261 gtaaagaaga ctgtaaaaga acatgctcag aatctctatg actattatgt tggtttcacc
     7321 ggagatgata tccacataat aatgagtcac gcaaagggac ctgacaataa agaaattcat
     7381 aaacttgctt gggatgcgtt taccgaagct actaaaattg caaaaggaca aggactctac
     7441 ggcgcaggtc aagatttgtt gaaggatgcc ttctctggaa atgtgaaggg aatggggcca
     7501 ggtgtagccg aaatcgaaat ggaggaaaga cctagtgaag tattcagtat cttcgcagct
     7561 gacaagactg aaccaggcgc atttaatttt cccttctggc gcatgtttgt tgatgcaaga
     7621 agtagtaccg gtcttctaat taacgaaagt ttggcagagg gtgtgttgtt cagaattatg
     7681 gatgtaatgt ctggaaaggt agcggatttg aaaatgtggc aagataagcc tgaattggaa
     7741 gcagcgctga tgtatcctgg tcgatacgtt gtacattcgg tcttctcata tgatggtgaa
     7801 cagattctat ctgcgtcaac tgacagatta cacaacatag ctggaacgta tgtcggaaag
     7861 gacgatccaa ttgccatagt ccgtactcag aagaattttc cagctacgga agaggcaggc
     7921 agcgcgttta atgaacctca ttttgtcgct ggaaacacga gaggaagcca tcacatgccc
     7981 ttgatgccgg tgaaggttaa ttcctctgca agtattaatt attcgattcc aatagtttca
     8041 tgccttgtct ttagtatgca taatggcgtc ttcactggac ctcatgatgg ttttggtact
     8101 gttgattggg atcttcaacg gatgtgggct gcggagaggg caatgatcat gcgaaatcaa
     8161 gggtttgtgc atcctgctac tctggtacca gaagagttgg aatacaacaa aggatatgaa
     8221 gcaagaatgg caaagcttaa caataaattt aaagaattgt aaatttctta aaaagcgtta
     8281 tcatgaaact attttccaga ccgctcataa ttaatttaaa aaactatctt gaaatcggtg
     8341 gtaacgattc aataaaattt gcaaggaaag caactggtgt ccagaaaaaa tatgacgtag
     8401 atattatcat ttcccctcca attagtagct tacttgcagt ttcaaacatc accaagttgc
     8461 cagttgtgtc acaacatgtg gacgacgaat atgtaggtcc ctctactggt ttcactgtac
     8521 cagaaatcat taagtcctgt ggagctgtcg gatcaataat aaatcatagc gaacacaaaa
     8581 ttgatttgct gaccgtcaaa aaccttatca aacgccttag aggactcaat ttgatatcaa
     8641 ttgtctgtgc cgctgatgta ggagaagtca ataagatttc atccttttct ccggactata
     8701 tcgcaataga acccccagaa ctaatcggaa agggcatagc agtctctaag gcaaacccat
     8761 caataatatc catgtcagtt aaggcagtac gaaataattc tactaccacg agagtgctct
     8821 gtggtgctgg tatagtaaat aagagcgatg ttacaaaagc tctggaactg ggagccgatg
     8881 gcatacttgt tgcaagtgga ataattaaat catcatcatg gtatcataag attgaagaat
     8941 tatcatcagc atttgtttga tgcttcaaat tattttaatc cttgtttagt gaatcaatta
     9001 gacacctatt tcctttgcaa tcattacaat tttctttccg tcactcgtta atttattaaa
     9061 gaccttgttt ttaacagttt ttcgttctac cagtcccctt ttctgtgctt ttaaaagtaa
     9121 tttgtgtccg tatccatatg ctcctaactt tgtcaacaat tctctcgtgg catattccct
     9181 tccccgacct atagtcttga gcagcttgac caaagatttt tcctccacca atattttgac
     9241 taatcttgca tctttcatac cttaattcta aatagatatt atataatcgt tgtacgttat
     9301 tggaaacgtg gttaatagta atattacatt atgtaatgaa gttgaactta tataacacct
     9361 gtgatgtctg taaggaccac atattacttc gattctgtcg ctaaattaag agtcgcatct
     9421 ttatctagta acgttatctc ttggctctat attgtatcca aattaaagga ttgtggtatt
     9481 taactaaaca gatggaaatt ttatcttgaa caataccaag ttctttccta gatttattca
     9541 aagtaatatg agaccatcaa aactgacaca aagataacga aaagttttta cttatgaaaa
     9601 atacactggc gttactaatt aatttcacat tcatcacttc aattcttatt atttgagatc
     9661 actgcgtcta gtttttcaat aaatgttttc atcctctctt ttggtattac tgccccacat
     9721 gccctatcat gaccgccacc gctccctcca agatcagagg atattgagtt aacagccctc
     9781 cctaaatgta ccatgcattc ttttgaccct cttattgata ttatgtagga atttatgtcc
     9841 gctttgaacc tgtatactag ggccaccgat ttcccggata agcctaagac aaaattgaca
     9901 atcagactag aagacaattc aacgttactt tcgagatatg caagatgatt tccaatcgat
     9961 atcctatctt caatagactt tacggcattg gaaacttttt gcgcgtattt tttggctcta
    10021 tcaaaacctt cctcaatatc atgaggatat ttcatatcag atagcttttc aattatagct
    10081 gataagaatt ctgtttcatg ctgacccgaa gagatcatat acgataaagc tgatgcttcg
    10141 agcatcagaa attgtctatc atatttcgaa actattgtgg aagctttagg ttttgtttcc
    10201 aaataatcgg taatggctcc tgcagcggca aggaaagccg catgtggctt aagttttttc
    10261 t
//
LOCUS       DASSIK010000069         2955 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1391263, whole genome shotgun sequence.
ACCESSION   DASSIK010000069 DASSIK010000000
VERSION     DASSIK010000069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2955)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2955)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2955
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1391263"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(138..452)
                     /locus_tag="VFI64_01330"
     CDS             complement(138..452)
                     /locus_tag="VFI64_01330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241959.1"
                     /translation="MKQSYNLTMSLGESYIEGRATSENKEYIVNIQGGATCLILPSEF
                     EKVCENATLHFFTEKGNKLKLEAKVEYSRDWIQIYDDFATLSLSSDLPIVMTIEYGDN
                     LN"
     gene            complement(555..1052)
                     /locus_tag="VFI64_01335"
     CDS             complement(555..1052)
                     /locus_tag="VFI64_01335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241960.1"
                     /translation="MVTNIFTNFYKRYSSTISLNKNLLISGTVGFIVSLVVAYESAKY
                     STDDFANSAITVIAGFFFAKIVFIVLFHLDNRKKYTKRFTGKLNFPVLKQIVKKMLFA
                     DSIFEIISNVTRFFILLQLLRIEYPPIQAATIASLIASSFAYLAINLVVRRIHVFSSK
                     KKMFS"
     gene            complement(1150..1770)
                     /locus_tag="VFI64_01340"
     CDS             complement(1150..1770)
                     /locus_tag="VFI64_01340"
                     /inference="COORDINATES: protein motif:HMM:NF021098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YsnF/AvaK domain-containing protein"
                     /protein_id="HET7241961.1"
                     /translation="MESTDYGNILWEEVIKKEARGIDDYSLGEVRQVTSEYVITHKGI
                     VNTKWFQIPKHLAQAFDGNQLVLKVTEKQAKDLYVKHESPLEEDQEDSETTVSLVEER
                     LEPRTRQIMEEATIVKEPIKETKHMDVSLTHEELVLERRPLTEPQMTDQEPVESRTEI
                     KIPLKREEIETTKQSYVKEEVIVTKKPITETQTITEELTSEKLTEG"
     gene            1861..2682
                     /locus_tag="VFI64_01345"
     CDS             1861..2682
                     /locus_tag="VFI64_01345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241962.1"
                     /translation="MKEEKITKPKEQGSIQPSVSDNSSPTEILPSKDPNSAMKTKRKP
                     ALEDTVVSPEMPKATITVIRPTTMQKDDSLSGRASDLMGSMKDKTEGAIDSIMSATGQ
                     GVKRTLSNLDTGPLVIPIIEQKSSLETKSYTEEIMIEKRKVERKKNIEVKVAYDEIFV
                     NGKEIGSSMGDTLREIKDKILEVVTFDHDRDEKELKKIKRGMIPLLENNTETEKVIPL
                     YAEQIVVSKRTVKVADLIIRKRKVTDTHKVGIDQITEQLTVRNPTGGLSASENDE"
BASE COUNT          922 a          536 c          536 g          961 t
ORIGIN      
        1 gaagattacc aaacacttaa agttcgtttt ccctgacaac cagtaatcat acgttgaagg
       61 tagctatata caagttacat ttttttatct tagtgcattc ttatcaattc ctagtaaaac
      121 gcgttacaaa atcaaattta attcagatta tctccatatt caatggtcat tacgattggc
      181 aaatcgcttg acagggacaa ggtagcaaaa tcgtcataaa tttgaatcca gtcccgactg
      241 tattccacct ttgcctctaa ttttagttta ttccctttct cagtaaagaa atgtaaggtc
      301 gcattttcac aaactttttc aaactcgctt ggtagaatta aacaagttgc tcctccttgt
      361 atgttgacta tgtattcttt attttctgac gtagctcttc cctcgatata actttcacct
      421 aaactcattg tcaggttgta agattgtttc atatatttta aaaatgaaat attgcattta
      481 agggattatt ctggctatat cgagtccgaa cggttgcaaa aactaaagcg agttcgactc
      541 ctgcttttat ttcttcatga gaacatcttt ttctttgagc taaatacatg aattcgtctt
      601 acaactagat ttatggctaa ataggcgaaa gacgatgcaa tgagtgatgc tatcgttgct
      661 gcttgtatgg gaggatattc aattctcaat aattgcagga gaatgaaaaa tcttgtcaca
      721 ttactgataa tctcaaatat agagtcagca aataacatct tctttacgat ttgtttcaaa
      781 actgggaaat ttaatttgcc tgtaaatctt tttgtatatt ttttgcggtt atcgaggtga
      841 aagagaacaa taaaaacgat tttagcaaag aagaatccgg ctattacagt tattgcagaa
      901 tttgcaaaat cgtcagtgga atatttggca gattcataag caacgacaag actaacaata
      961 aaaccaacag tacctgaaat tagcagattt ttgttgagag atattgtgct gctatatctt
     1021 ttgtaaaaat ttgtaaagat atttgttacc acggcacgat cttcgttttg tttagttaaa
     1081 taataacaaa atggtcggat gaattttttg gtaatactga acaataaagt aaagatggca
     1141 ttaagtggac taaccttccg ttaatttttc acttgtcagt tcttcagtta tagtctgagt
     1201 ttctgttata ggctttttag taactattac ttcttcctta acataagatt gttttgtagt
     1261 ttcgatttcc tctcttttca gtggtatctt tatctcagtt cttgactcga caggttcttg
     1321 atcggtcatt tgcggttctg tcaaaggtct tctctctaag accagctctt catgggttag
     1381 gctaacatcc atatgctttg tttcctttat tggctctttt acgattgttg cctcttccat
     1441 tatctgtctt gttctaggct caagtctttc ctctaccaat gacacagtcg tttcggagtc
     1501 ttcctgatct tcttccaatg gtgactcatg tttgacgtac aaatcctttg cttgtttttc
     1561 cgttactttt aaaacaagtt gatttccatc aaacgcttgt gctaaatgct ttggaatttg
     1621 aaaccacttt gtatttacaa tgcccttgtg cgttatgacg tactctgaag ttacttgtcg
     1681 gacttcgcca agactgtaat cgtcgatgcc tcgtgcttcc ttctttataa cttcttccca
     1741 gagtatattt ccataatcgg tagattccat tctacagtac tatcttcaac atatgattta
     1801 atgcttcaga gtcgcagaat agtagaattg aattaagaga tattatgcat tataaagtac
     1861 ttgaaagagg aaaagataac taaaccaaaa gaacaaggta gtatacagcc ttcagtatcg
     1921 gataactcaa gtccaactga gattttaccc tcaaaagatc ccaatagtgc catgaagact
     1981 aaacgcaaac ccgctctcga agatacagtc gtctcacctg agatgcccaa agcgacgata
     2041 accgtaattc gacccactac tatgcagaaa gatgattccc tttcgggtag ggctagtgat
     2101 ttaatgggat caatgaagga taagactgag ggagccatcg attcaataat gtcggcgacc
     2161 ggacaaggcg tgaaacgaac actatccaac ctcgatacag gacctctagt aatcccaatt
     2221 attgaacaaa agagttcttt ggagactaag agctataccg aggaaataat gatcgaaaag
     2281 agaaaggtag agcgaaaaaa gaacattgaa gttaaggtgg cttatgatga aatttttgtc
     2341 aatggtaaag aaataggtag cagtatgggt gatactttga gagaaataaa agacaaaata
     2401 ctcgaggtcg ttacttttga ccacgataga gatgaaaaag aactaaaaaa aatcaaacgt
     2461 gggatgattc ctttgttaga aaataacact gaaaccgaaa aagtaatacc actatatgcc
     2521 gagcagatag tagtatccaa aagaacagtc aaggttgcag atctaataat tcgtaaaaga
     2581 aaagtgactg acacacacaa agtaggcatt gatcagataa cagagcaatt gacagttcga
     2641 aatccgactg gcggtttatc ggcttctgaa aacgatgaat aaacttttgt ttcctagccc
     2701 cttacattag cttgatgaat tcgaattcat aatactgaca gcaccattag cagtttctac
     2761 aacctgtaac caattacatg agaggggtac tgggttatta gtcataagtt tgcctgctgt
     2821 tgattatttg caactagaac attcggcttg ccttgaaata tgactttttt tatcgttatc
     2881 agtggcttaa gatgctgctt tacaatcgac aaggtatgtc ctattcatcg ctcgttgtga
     2941 atagtttatt aattg
//
LOCUS       DASSIK010000070         2664 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1097082, whole genome shotgun sequence.
ACCESSION   DASSIK010000070 DASSIK010000000
VERSION     DASSIK010000070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2664)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2664)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2664
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1097082"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..255
                     /locus_tag="VFI64_01350"
     CDS             <1..255
                     /locus_tag="VFI64_01350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241963.1"
                     /translation="CTSGKITISDWTATDPPDTHPAKDQHDFTKPEREYAKGIVHNLS
                     YQRLTDQEIVQWLHDEKQIDLDRSTVTKIKNQINIVWPVK"
     gene            424..2142
                     /locus_tag="VFI64_01355"
     CDS             424..2142
                     /locus_tag="VFI64_01355"
                     /inference="COORDINATES: protein motif:HMM:NF024140.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HET7241964.1"
                     /translation="MNGSSGTTKGKAPQYAALYPNENGGKIPYYSKIGTKLIVGFLVI
                     ACITGSVGYLSFNYSLTVGEKFHELALQTIPVFDSLKEIKVAALSMEASTQEYVLSPD
                     LNRDRFLQEINIQKDDLKSNLKKYSDLVNKYFPDETDLNESIHKNVNLYVQNSDRMVQ
                     LRQNSTLSAQPMRNITMEQGFQASEDVLFQSIDNAISHEIDEIANRSNAVDTAIKNSS
                     LVTVFSTVISVTIAIVFGLHFSRYISRPISDLRQASIQIGKGDYVTACKFLSKTHRTD
                     EIGKLSSEIEKMRQSIEAMKTNMDKLVGQRTEELEMKNHQLLETEKNLRLVNEELVKT
                     ELAKEEFMSMVSHELKTPLSPMKLYSQMLLKSSKSFGKLNERQNKAVTVILDSIMKLE
                     VLISDILDVYKLDIGRLRINKIDVDVEKLVDQIVTEFKPLAEDNKIELRSDVRVRSTI
                     KCDPQRISQVLSNLVKNSLDFVPKETGLITIQASEDSNDGLRKVIFTVEDNGSGIPAD
                     KIDNLFKKFYQVDTTLTRKHGGTGLGLTISKGIIEAHGGTMWIDKNYNNGACFRFTLP
                     RNDETI"
     gene            2139..2507
                     /locus_tag="VFI64_01360"
     CDS             2139..2507
                     /locus_tag="VFI64_01360"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HET7241965.1"
                     /translation="MKVLVIDDNKDLTEAISYGLEDPDIECKIINDGKEGLDEILRER
                     GKYNVILLDIAMPEFSGIDVLARLKKEDVIKSENIIIFTASSITDRDIDDFVKSGAKG
                     ILKKPVSLDDLIELIGKYRS"
BASE COUNT          963 a          475 c          536 g          690 t
ORIGIN      
        1 tgtacttctg gaaaaataac tatctctgat tggacagcta cggaccctcc agatacgcac
       61 cctgcgaaag atcaacatga tttcacaaaa ccagaaagag agtatgctaa gggaatagtc
      121 cataatcttt cataccagag actgacagat caggaaatag tccagtggct acatgacgag
      181 aagcaaattg atttagacag aagcacagtt accaagatta agaatcagat aaacatagtc
      241 tggcctgtca aataaatgac atgaccggcg atttatgata ggtcgtgctg gcaagggacc
      301 gactagggat ataaatttca ttgagcggta cagttatcat ataatgaaat caaccaacct
      361 aaccctcaga tagaaaaatt aatgtaattt gccgtagctc ggtaaatgga gatgattttc
      421 taaatgaacg gttcgtctgg cacgacgaag ggaaaggcac cacaatatgc tgcactctat
      481 ccaaatgaaa atggtggcaa aattccatat tattcaaaaa tcggcactaa acttattgta
      541 ggttttttgg ttattgcgtg cattactggc tcagttggat atctaagttt taattattct
      601 ctaacagtgg gagaaaagtt tcacgaactt gcgttacaaa ctataccggt ttttgattct
      661 cttaaggaaa ttaaagtggc agcattaagt atggaagcat cgacccaaga atacgtgctt
      721 tcccctgacc tcaatagaga tagatttctt caagagataa acattcagaa agatgatctt
      781 aaaagcaacc taaagaaata ttctgactta gtcaacaaat actttccgga tgagacagac
      841 ctgaatgagt ctatacataa aaatgtcaac ttgtacgtcc aaaattccga tagaatggtg
      901 caattaagac aaaactcgac tttatcagca cagcctatgc ggaacataac aatggaacaa
      961 ggttttcaag cttcagaaga cgttctattt caaagcattg ataacgcaat ttcccatgaa
     1021 attgatgaga tcgcaaatag aagtaacgca gtcgatactg caatcaaaaa ttcttctctg
     1081 gtaaccgtat ttagtactgt tatatctgta acaattgcca tagttttcgg tttgcacttc
     1141 tctcgctata tatcaagacc aatttctgat ctgagacaag cgtccatcca gataggtaaa
     1201 ggagactatg tcaccgcttg taaatttctg tccaaaaccc acaggaccga tgagataggc
     1261 aaattgtctt ccgaaattga aaaaatgaga caaagtatcg aggcaatgaa aactaatatg
     1321 gataaactag ttgggcagag aacagaagaa cttgaaatga agaatcatca attacttgag
     1381 acagaaaaaa atctaagatt ggttaatgaa gaattagtta aaacagaact ggctaaggaa
     1441 gaattcatgt cgatggtaag tcacgaattg aaaacaccgt tgtctccaat gaaactttac
     1501 tcccagatgc ttctcaagtc atccaagtca ttcgggaaac taaatgaaag acagaacaaa
     1561 gccgtcacag ttattcttga tagtataatg aaattagaag ttctaataag cgatatcctt
     1621 gacgtgtaca agttggatat tggaagactt agaataaata aaattgacgt agatgttgaa
     1681 aaactggtag accaaatcgt aactgaattc aaacctctcg ctgaggacaa caaaattgaa
     1741 cttcgctctg acgtacgtgt acgaagtacc attaaatgtg atcctcagag aattagtcag
     1801 gtattatcca acttggtaaa gaattctcta gattttgttc caaaagaaac cggtctaata
     1861 accatacaag ctagtgaaga tagcaatgat ggcttacgca aagtaatttt cactgtcgaa
     1921 gataatggtt ctggaatccc tgctgataaa atagacaacc tgtttaagaa attttatcaa
     1981 gtagacacaa ctcttacacg aaaacatggg ggtaccggat taggactaac aatctcgaag
     2041 gggatcattg aggcccatgg cggaacaatg tggatagata aaaattataa caacggagca
     2101 tgttttaggt ttacactccc taggaatgat gaaacaatat gaaagttcta gtgatagatg
     2161 acaacaaaga tctgacagaa gctatatcat acggcttaga ggacccagat attgaatgta
     2221 aaattatcaa tgacggaaag gagggattgg atgagatcct aagagaaaga ggcaaataca
     2281 atgtgatttt gcttgatatt gcaatgccag aatttagcgg gatcgatgtt ttggctcgat
     2341 tgaagaaaga agatgtgata aaatctgaga atatcataat atttacggca tcctccatca
     2401 ctgatagaga tatcgatgac tttgtaaagt cgggggcaaa agggatatta aaaaagccgg
     2461 tgtctctgga tgacctaatc gaactcattg gaaaataccg cagttaacac gattttagaa
     2521 ttgaatgaaa cccaagccta aacgcaccaa atcgtactcc aaaatgactc tgcagacgat
     2581 acggacgata cggacgatac ggacgatact ttgaaagaat tggtacagag cgaatctcct
     2641 aaacgaccgc ctggatataa tacc
//
LOCUS       DASSIK010000071         2996 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_15170, whole genome shotgun sequence.
ACCESSION   DASSIK010000071 DASSIK010000000
VERSION     DASSIK010000071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2996)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2996)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2996
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15170"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(8..211)
                     /locus_tag="VFI64_01365"
     CDS             complement(8..211)
                     /locus_tag="VFI64_01365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241966.1"
                     /translation="MQVISSWEQAPLTTSKVRMVEMKFKRETMSIYFMGDKGDDSVQA
                     GFGNDNILADDGVDAVFAGPNGE"
     gene            complement(683..1030)
                     /locus_tag="VFI64_01370"
     CDS             complement(683..1030)
                     /locus_tag="VFI64_01370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241967.1"
                     /translation="MSEKEKQSSLHTFLRYKDLEDMLKVILFSAQSPLGLVPMLYHLE
                     LKQRQILFIQTGTIGGVTIHYKVEKEKPSKKFIELNRLTGQYSFAESLGSDTQSLYIP
                     VLELEDASLKFPT"
     gene            complement(1248..2147)
                     /locus_tag="VFI64_01375"
     CDS             complement(1248..2147)
                     /locus_tag="VFI64_01375"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HET7241968.1"
                     /translation="MQFCLEVWGTSYGDIRDTCILAEDLGYYGFYYGESLAEIDMDCW
                     TIISNLSAITSKIRLGPVITYLLPKYRNIALLAKQAVTFQDMSGGRLAFRTGAGATLH
                     YASQWWYPFGIDYPTIKERLDILDEGLQVLQKFWNSPSVFFAGDYFKVNGGTLTKTNT
                     PIPITIAAKSEKMMAIAAKYADVWEASYISPDKFKLLFEKFMEISDIVVRRNNKITSS
                     IELDVIIAESDSELAYKEKLFMMDRGPSIHNQILQNGLVGTPDRVRERIKEYVDAGVE
                     QFFLAFHDPFNHHDLELFMDTVK"
     gene            2341..2703
                     /locus_tag="VFI64_01380"
     CDS             2341..2703
                     /locus_tag="VFI64_01380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241969.1"
                     /translation="MSQTELKEFEWYLRDHLFRNQNKAISTFELNSLPQTMIDTYLRY
                     RNADLDQILVLLNSSVENLVSRNVLKHNKDSVESTGKISRMQCARCLYICYVSENEPT
                     SCFRCYSSELHTFPKKKE"
BASE COUNT          906 a          597 c          520 g          973 t
ORIGIN      
        1 cgttctccta ttcaccattt ggtcctgcaa atacggcatc gactccgtca tctgcaagga
       61 tgttgtcatt gccaaagcca gcttgaacgg agtcgtctcc cttatccccc atgaaatata
      121 tcgacatcgt ctctcgcttg aatttcatct ccaccattct aacctttgat gtcgtcagcg
      181 gcgcttgttc ccaagaggat atcacttgca ttgttactgc tggcttaagg atttaaagcc
      241 cccctccccc catagtgttt caatagttat ttgcatctaa tttctatctt attggtgcat
      301 gaatttcttt cgtctggtaa tccttcgatc tacagacatt gtatcagttg cgatataaga
      361 acggcccaca cctgcatcaa atgctattat tgttactctt gtcatgcaaa tattgaactg
      421 ttagagaatg ttcaaaaaag gacaaaacca aaaactcttc gacaaaggat aaataaagtt
      481 ccagaagtcg acagacagca atacaaaccg ttattcatca cttatagcat aaaataattt
      541 cgtatttttc cttcgacaaa gtgaattcag tgaaaaaagt gaatcattct atttggagta
      601 gttacataga gagatgaatc aaaacgtgag ggaataaagg atgtttacta acctttcttg
      661 tacatatgtc gtgtcttact ttttatgtag gaaatttgag ggaagcatct tctagctcca
      721 gtactggtat gtataatgac tgagtatcag aacccagact ttcggcaaag ctatattgtc
      781 ctgttaacct atttaattca ataaatttct tgcttggctt ttctttttct actttataat
      841 gaattgtcac gccaccaata gtgccagttt gaatgaatag aatttgcctt tgcttgagtt
      901 ctaagtgata cagcataggg actagaccta gaggagattg tgctgaaaac aggattacct
      961 tgagcatgtc ttcaaggtcc ttgtacctta agaaggtgtg taacgacgat tgtttttctt
     1021 tttctgacac atttgttaaa agttgccgcc ctaatttctc tatagcgttg taaaaattgt
     1081 aacaaactga attgtgattc tttacctcgt tattctatcc tttagtaagg cctcctttct
     1141 atctaatact ttaccctatt atacacttga cctatttgta cttcatagga tgtgaaatgc
     1201 tcaatgaatc catctttccc acaatccaga ccatggctta caacatatca ttttaccgta
     1261 tccataaata attcaaggtc atgatgattg aaaggatcat gaaaagcaag aaagaattgt
     1321 tctacccctg cgtctacata ttccttaatt ctttctctca ctctgtccgg tgtacctacc
     1381 aacccatttt gcaaaatctg gttgtgaata ctgggtcctc tatccatcat aaataatttt
     1441 tccttatagg ccagctccga atcagactcg gctattataa catctagttc gatagagctt
     1501 gttattttat tgtttcttct cacgacaata tcggaaatct ccatgaattt ctcaaacagg
     1561 agtttgaact tatcaggcga gatataagag gcttcccaga catccgcgta ttttgcggcg
     1621 atagccatca ttttttcact ctttgcggct atggtgattg gaattggcgt attggtcttt
     1681 gttagagtac caccattgac cttaaaataa tcgccggcaa agaaaactga aggactgttc
     1741 cagaattttt gaagaacctg aagtccttca tcaagaatat caagtcgttc cttaattgta
     1801 ggataatcaa ttccaaatgg ataccaccac tgagacgcat aatgcaaagt cgcaccagcg
     1861 cctgttctaa atgcaagcct tccccccgac atgtcctgaa aagtcacagc ctgttttgca
     1921 agaagagcaa tgtttctata ttttggtaat agataggtta ttactggtcc taatcgtatt
     1981 ttactggtta ttgcagataa gttagatatg attgtccaac aatccatatc aatttcagct
     2041 agagattccc cataatagaa tccataataa cctagatctt ctgccaaaat gcaagtgtct
     2101 cttatatctc catatgaagt tccccatacc tcaagacaga attgcatgtc aattaggtag
     2161 aatggaaagg attattatca ttttgttgga ccgacatacg tatagtctct ggattcacgt
     2221 gtacttatta tttagttaaa ttcctatgat ggcagtataa ttgagttgaa tacggcagat
     2281 tcagctacta ttccatatcc atagttttta tctaacttca ttatcgacta aactatatca
     2341 ttgagtcaga ctgaattaaa agagtttgaa tggtatctac gggatcatct atttagaaac
     2401 caaaacaagg caatatctac atttgagcta aattcgttgc cgcagacaat gatagacacg
     2461 tacctaagat atcgaaatgc tgatttggat caaatcttgg tccttctcaa ttcttccgta
     2521 gaaaatcttg tatcaagaaa cgtattgaag cataacaaag attctgttga atcgactggg
     2581 aagatctcta ggatgcaatg tgcccggtgt ctctacatct gttacgtgtc tgaaaatgaa
     2641 cctacctcgt gttttagatg ttatagtagt gaattacaca cttttcccaa gaaaaaggaa
     2701 taattccata cgaggtaaat atcctagtaa tgggaattgg tacctaaaat actagcaata
     2761 aggcgatgac gtacatccaa ttagcatatt gtacttttca aaacaatatt tcttttcaaa
     2821 tattatcttg gtggctaatt acgatgcaag ggctaaatgc tgctaattgg cttggatcca
     2881 gacatccgct attgaaactc atatatatag acctgcggta tcttccgtga aagagaatgt
     2941 cagctttaac taatcgaaaa tttaatgaag aaatgattca atttgttggg aaaaaa
//
LOCUS       DASSIK010000072         3599 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_808401, whole genome shotgun sequence.
ACCESSION   DASSIK010000072 DASSIK010000000
VERSION     DASSIK010000072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3599)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3599)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3599
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_808401"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..438)
                     /locus_tag="VFI64_01385"
     CDS             complement(<1..438)
                     /locus_tag="VFI64_01385"
                     /inference="COORDINATES: protein motif:HMM:NF014877.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241970.1"
                     /translation="MKISISGIRGIYGDDLSLHDVVKFSRIFGSFISKFGTKTCFLAR
                     DTRPSSDILLKTVCAGLMAQGIDIFNIGIAPTPVAFRESRKDKSALIVTASHNPLEWN
                     GLKFVIEGRGIFEDELDSILKSSISSSTTYGKVYDVHSSYIQDV"
     gene            749..822
                     /locus_tag="VFI64_01390"
     tRNA            749..822
                     /locus_tag="VFI64_01390"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:783..785,aa:Thr,seq:cgt)
     gene            1948..2196
                     /locus_tag="VFI64_01395"
     CDS             1948..2196
                     /locus_tag="VFI64_01395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241971.1"
                     /translation="MSGRLQNCISELVSITITPKRLNELNDAYEMEHLVDSFLNLLAD
                     ICYIKSLSFIGTMLSDSFKWYSKLVTPINPLKDIKSVT"
     gene            complement(2257..2979)
                     /locus_tag="VFI64_01400"
     CDS             complement(2257..2979)
                     /locus_tag="VFI64_01400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241972.1"
                     /translation="MLQLHEKLYELAKLDLKAANILRDNNMFSHAICEYAQSFEKSTK
                     SILAKYFVSYEKMGEQEIEEKMKKSYGHKLIKVSIGMINIIIEDDIRLYVSKGGKKTD
                     DFVQNPLKAIQGLEQHKYSEEELIVHFSDIVSHNFKAYQRTKIKQFDGYEHPGWKYLQ
                     QQFANAKTTYLRYMTISWILAPVLEYMERYVRYPSKSVNYNNIRFLLDRKNKKPCDML
                     GEMISELIDTVPLVWDKILSMT"
     gene            3148..>3599
                     /locus_tag="VFI64_01405"
     CDS             3148..>3599
                     /locus_tag="VFI64_01405"
                     /inference="COORDINATES: protein motif:HMM:NF014752.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ERCC4 domain-containing protein"
                     /protein_id="HET7241973.1"
                     /translation="MVDRREKSSSIPELLMKAGITVDFATLKVGDYVISSNTAVERKT
                     VHDLLKSIYDGRLFIQCSQLIKYFPSPLIIIEGNIKDLELLYESKNLPYSDKTRSIYE
                     SISAIILDFRIPLINTPSGTHTTNLLVAMAYKSLQERSDDGPLLRKIK"
BASE COUNT         1133 a          619 c          652 g         1195 t
ORIGIN      
        1 aacatcttgg atataactag aatgaacatc gtacaccttt ccatatgtag tactagaaga
       61 aatggaactt tttagtattg aatctaattc atcttcgaat attcctctac cctcaatgac
      121 aaattttaaa ccattccatt ctagaggatt gtgcgaagct gttactatca atgccgactt
      181 gtcctttctg gattctctaa aagctacagg tgttggcgct ataccgatat taaatatatc
      241 tattccctgt gccattaggc ctgcacaaac tgtcttaagt aaaatatcac tcgatgggcg
      301 agtgtctctt gcaagaaaac aagtttttgt tccaaattta ctgatgaaag agccaaatat
      361 tctcgagaat tttactacat catggagaga aagatcatca ccataaattc ctcgaatgcc
      421 agatatcgaa attttcatac gtttaaaggt taaattcttg taatatttag tctttgatca
      481 cgggagaacc attttgcgat ttattgatat tggatatgaa attgaataca tttcactata
      541 ttttaagaat gatatttggt attggtattg gtattggtat tggtttagct tcccatcccc
      601 atccaaattc aagtatagat agtttctaat gacaatttat tggttagaat aaccgaaggg
      661 gatttcgggc tgttgaagga aatgaataat aattaaatct atattaaatg ttgcaaacgt
      721 ggtttagagt gactcgactc gacattttgc ctcagtagct cagcctggca gagcgaaggt
      781 ttcgtaaacc ttaggccgtg ggtccaaatc ccacctgagg ctctggactc tcagttcgaa
      841 gaccgttttt gcttcgaact atagctaatg gtatcataga ttgatagaca aacttcactg
      901 tctcaaatat ctgtaattat ggcataatac gatgaaaagt gcgctcatgc tctattgaga
      961 tttgttatag ttcgtgttat tatgtcaatc ttatagaatt tttcttaacc aagcagataa
     1021 atactcttaa tcgactctag aaagaaggtc gtttaattcc tacgggtttc gacggattaa
     1081 ggtaattcaa atgtcatcaa tcaaacaaca tcaagcaaca aatacaatac gaggatatca
     1141 tgatgctcaa tttttgatct gtaacacttg cttttggtgt gcttcttatc tttcacataa
     1201 tcctcattat attgaaaatt gtcctgcttg caggagtgat agaatggaga ttatcccaat
     1261 atctcaaaaa gaggcataca aggtaaatgt ggagggtagc agtatctcta tggagttttg
     1321 gaatgaagta tgactattta agctcttaaa atagcttctt tacctttgtg gaccttatac
     1381 tattgtggag tcccctgaga gcagaatagt gccaagtgaa gacatgaatg ctatccagtt
     1441 aaggatcagt ggagaaacat ttccagaagt gattctggaa gtatgcgata attgcaattg
     1501 gtcgttacaa tgtattaatc ataaaggtat tgtcaggacc tgtccaaatt gtaggagtaa
     1561 ggtatcttta attcctatga atattgacga gatttgctcc ctacaacatg atgatagaag
     1621 ggggatgaca atgatttttg atcgtagaaa accaatgaga taaaatcata gctgatgtga
     1681 gggatgtgtg gttggtgtta gaattcctcc caccagaggc aacgttgcgt aattggtaga
     1741 atatgctaaa aattataaaa attttattgg ttaattacaa gaaactggtt ccggagtagt
     1801 gagctatcac aatcataccc cagaatcagt cggagcttat atcgtcaagg atgaatataa
     1861 aattaaattc tttttgaata gtatggaaaa ctggtgaatc gattggggtt ctggaagagt
     1921 ttagctcacc agtgacatgt cgacgaggtg tcaggtagat tacaaaattg tatatccgaa
     1981 ctggtgtcta ttacaataac tccaaaaaga cttaatgaac taaatgatgc ctatgaaatg
     2041 gaacatctgg ttgattcttt tttgaatctc ttggctgaca tttgttatat taaatcatta
     2101 tcatttatag gaactatgct gtctgactcg ttcaaatggt attcaaagtt ggtcacgccc
     2161 ataaatccac taaaggatat aaaaagtgtt acttgatgtc agagcgaact taacgatttg
     2221 cgtgatacca agaacataaa tctttaaatt tacaatctaa gtcattgata agattttatc
     2281 ccacaccaat ggcactgtat cgattaactc tgagatcatt tcgcccaaca tatcacacgg
     2341 ttttttattt ttacggtcca aaaggaatct aatgttatta taattaaccg acttactggg
     2401 atatcttaca tatctttcca tatattcgag aactggagct agtatccatg agatagtcat
     2461 atatctcaaa tatgttgtct ttgcatttgc aaactgctgc tgaagatatt tccatccagg
     2521 atgttcatac ccgtcgaatt gtttgatctt ggtcctttgg taagccttga agttatgaga
     2581 aactatgtcg ctaaaatgca caatcaattc ttcttctgag tatttgtgtt gctctaaccc
     2641 ttgtattgct ttaagtggat tctgtacaaa atcatcagtt ttcttcccac cttttgatac
     2701 gtaaaggcga atatcatctt caattataat gttaatcatt cctatactta ctttgatcag
     2761 cttgtgacca tatgatttct tcattttttc ttcaatttct tgttctccca ttttctcgta
     2821 tgatacaaag tactttgcta atattgactt ggtacttttt tcaaaacttt gtgcatactc
     2881 gcatatggca tgagaaaaca tgttgttatc tctaagaata ttggcggctt tcaggtctag
     2941 ctttgcaagc tcgtatagct tttcatggag ttgcaacact acacagtaga agtcatactt
     3001 tagaaatgtt gtcaaatatt aataaaataa aggacatcaa tgtcgctgac aggagatatt
     3061 tatcggtgcc ttctcagcat attcactaac tagcaattaa ggtatttaac gactaatttt
     3121 gtcatatcat atgtgttcct tagaattgtg gtagatagaa gagagaagtc cagttctatt
     3181 cccgaacttc tgatgaaagc tggaataact gtggattttg ctacgctcaa agttggcgat
     3241 tatgtaatct cgtccaatac agcagtagaa agaaaaacag tccacgacct tctaaaatcg
     3301 atttatgatg gaagattatt tattcaatgt tcacagctta taaaatattt tccatctcca
     3361 ctaatcataa ttgaaggaaa tataaaggat ctcgaattat tatacgaatc aaaaaactta
     3421 ccgtattctg ataagactcg atcgatttat gaatcaatca gtgcgataat tttggatttc
     3481 agaatccctt taattaatac accttcagga acacatacaa caaatcttct tgttgcaatg
     3541 gcatacaaat ccttgcagga acgttctgat gatgggcctc tgctccgaaa aataaagaa
//
LOCUS       DASSIK010000073         2722 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1008884, whole genome shotgun sequence.
ACCESSION   DASSIK010000073 DASSIK010000000
VERSION     DASSIK010000073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2722)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2722)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2722
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1008884"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(158..1141)
                     /locus_tag="VFI64_01410"
     CDS             complement(158..1141)
                     /locus_tag="VFI64_01410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241974.1"
                     /translation="MSSFASQAFAIEMTTVVIPTLDEAQAQFTGDGIVTITYDPNSAL
                     SKNLTGFNENVKFKTNMSTPGMKELVSTINQVLNQKQTTARIQNATLDYNAQIHGTPG
                     QLKISYLVRFKPLIQDVTLPNQNNTAVNVVDMDWRSFVVPEPLNLQIPGLGEINVNYP
                     IGLLKAKLPNLASQIAATDTEKLLEKPILDFTLIGQPLDTWHFLFDPTGSQAGMLGSG
                     FKEIAGAKVVSIFSLGESSFREGTFKDIEQEAKATVDGTGVNIHTFKSKPSAQIQIAG
                     FAQLRGQFVTVSEEAPQGTNTATGGFPLQVLLILGGMMGAVAVFVLFKARK"
     gene            1345..2268
                     /gene="cofD"
                     /locus_tag="VFI64_01415"
     CDS             1345..2268
                     /gene="cofD"
                     /locus_tag="VFI64_01415"
                     /EC_number="2.7.8.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043743 - LPPG:FO 2-phospho-L-lactate
                     transferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-phospho-L-lactate transferase"
                     /protein_id="HET7241975.1"
                     /translation="MITVIGGGTGSIKLVRAIAKRVQDLQVISNVADNIWLMGLYICP
                     DIDTMVYGLSGHLDIGKGWGIKEESYNFLEQLKILGQETWFRIGDKDLAIHVTRTRML
                     KEGHSLLSITDWIRRQYEIQPRIIPVTNNHVETRIITEQGEMHIQEFWVKNKGSPEVR
                     GVRYEGLKTSIINQEAIDAISQSEIVVIAPGNPVSSIWPIVSHKVIKKELVRNRKRIV
                     AISPIIGSNPISGPAAKYMNAVGVEVSVAGVASLYNEFASNFVVSSNENPETIGKLEK
                     AGLYVSKTEIIMKDNRDELNLADFVLGFLKK"
     gene            2289..>2722
                     /locus_tag="VFI64_01420"
     CDS             2289..>2722
                     /locus_tag="VFI64_01420"
                     /inference="COORDINATES: protein motif:HMM:NF014085.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241976.1"
                     /translation="MKVAAVVPVKNFDTSKSRLSPLLNSNQRIAISQVMMKHTLSILS
                     KITFISSVIVVSCDNRVRKIADTFGADFVYERETGVNAAVRTADLFCLEKDIHSNMVI
                     PIDLCTLNPDDIKLIFIHSMKFQKSIALCPSSRRDGTNFLFRT"
BASE COUNT          848 a          504 c          551 g          819 t
ORIGIN      
        1 atgtataaac cattacttaa ttactacatc acttaatata ttagataata aattaattaa
       61 ttactataat acttaacagt tacaataggt agttaaagat ggtagaatca tatgggtaag
      121 tgcgattgtt ggacctaaat aaaaagaaat agtgctacta tttccttgct ttaaataaaa
      181 caaatacagc tacagcaccc atcatgccgc caagaatgag caatacttgc aatggaaaac
      241 caccagtagc tgtattggtg ccttgaggtg cctcttcact tactgttaca aactgccctc
      301 tcagttgtgc aaaacctgct atctgtatct gggcgctcgg tttagatttg aatgtatgaa
      361 tattgacacc cgtcccatcg acggtagctt tagcttcttg ctctatgtcc ttgaaagtac
      421 cttctctaaa actgctctca ccaagtgaaa aaatagacac cacctttgct ccagctattt
      481 ccttaaatcc actgccaagc attcctgctt ggctaccagt tggatcgaat aagaaatgcc
      541 aagtgtctag tggttggcct atcagtgtaa aatctaatat gggtttctct aacaactttt
      601 ccgtatcagt ggctgcaatc tgactagcga gattaggcag ctttgccttt aatagcccta
      661 ttggataatt cacatttatc tcccccaaac ccggaatttg caaattaagt ggctccggta
      721 ctacgaacga tcgccagtcc atatcgacga catttactgc agtattgttc tgattgggta
      781 aagtaacatc ttggattaat ggtttgaacc ttaccaagta gcttattttt agctgtcctg
      841 gggttccatg aatttgtgca ttatagtcca aggtggcatt ttgaatccgc gcggtagttt
      901 gtttttgatt caatacttga tttatcgtgg aaacaagctc cttcattccg ggagtggaca
      961 tatttgtctt aaatttcaca ttttcattaa aacctgtcag atttttagaa agagcgctgt
     1021 ttgggtcata ggtaattgtc acaataccat caccggtaaa ttgtgcctgg gcttcatcca
     1081 gggtagggat cacaacagta gtcatctcta ttgcaaaagc ctgtgaggcg aatgaagaca
     1141 agatgaagaa tcccaaaaaa ataggcagaa ttaccttttt ataatccacg aagaagagac
     1201 aagcatcctg tttatattct ttatcaggat gtaatgcttt gttttgaacg caatctttac
     1261 ctgttaaaat atcactaaaa ttacattaga attcggagga attgcaagca aatatagact
     1321 atactctttt ttgattgaaa attgatgatt accgtgatag gaggtggtac tgggtcaatt
     1381 aagctagtgc gcgctattgc gaagcgggtt caagacctgc aagttatctc taatgttgct
     1441 gacaatattt ggctcatggg cttgtacata tgtcctgata ttgatactat ggtctatgga
     1501 ctatcgggtc atttggacat cggtaaagga tggggaataa aagaagaatc atataatttt
     1561 ctggaacagc tcaaaattct tgggcaagaa acttggttta gaataggaga caaagatctt
     1621 gccatacacg ttacgagaac aaggatgttg aaagagggtc actcactatt atcgataaca
     1681 gattggatcc ggcgacaata cgaaatccaa cctagaatta tacctgtgac caacaatcat
     1741 gttgaaaccc gaataattac agagcaagga gaaatgcata tacaagagtt ttgggtgaaa
     1801 aataagggaa gtcccgaagt ccgtggagta aggtacgaag gcctaaaaac ttccatcata
     1861 aatcaagagg cgatcgatgc cataagccaa tctgagatcg ttgtaattgc tcccggaaat
     1921 cctgtttcaa gtatttggcc aattgtttca cacaaagtta tcaaaaaaga actggttcga
     1981 aataggaaaa gaatcgtagc tatttctcca atcataggga gcaatccaat cagtggtcct
     2041 gctgcgaagt acatgaatgc cgtcggagtg gaggtttctg ttgcaggagt cgcatctctt
     2101 tataacgaat ttgcctccaa tttcgtcgtt tcttcaaatg aaaatcccga gacaatagga
     2161 aaattagaaa aagccggtct ttatgtcagt aagactgaga ttattatgaa agataacaga
     2221 gatgaattga atttagccga ttttgtacta ggttttttaa agaaatgatt gtttaggata
     2281 gatgataagt gaaggtagcc gcggtagttc cagtgaagaa ttttgatacg agtaaatcaa
     2341 ggttatctcc cttattgaat agtaatcaga gaattgccat ttctcaagta atgatgaagc
     2401 atacactaag tatactctca aagatcacgt tcatttcttc agtgattgtc gtttcctgcg
     2461 acaatcgtgt tcggaaaatt gctgatacat ttggggcgga ttttgtgtat gagcgagaaa
     2521 ctggggtgaa tgcagctgta aggacagcag acctcttctg tctcgaaaag gacattcact
     2581 cgaatatggt catacccatc gatctttgta cattaaatcc agatgatatc aagttaatat
     2641 tcattcattc aatgaagttt caaaaatcta ttgccctgtg tccatcatcc agacgagacg
     2701 gtactaattt cttatttcga ac
//
LOCUS       DASSIK010000074         2396 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1195140, whole genome shotgun sequence.
ACCESSION   DASSIK010000074 DASSIK010000000
VERSION     DASSIK010000074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2396)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2396)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2396
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1195140"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            224..529
                     /locus_tag="VFI64_01425"
     CDS             224..529
                     /locus_tag="VFI64_01425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme iron oxygenase ferredoxin subunit"
                     /protein_id="HET7241977.1"
                     /translation="MTWIKVAETSEVKEKSGKELNVEGNRIALFRVNGNYFAIDAICR
                     HQDGSLAPGALDGEIVECPLHSWHYNIRTGALLDYLDGVKLKTYKVDIRGNEIYLDF"
     gene            585..1991
                     /gene="cysS"
                     /locus_tag="VFI64_01430"
     CDS             585..1991
                     /gene="cysS"
                     /locus_tag="VFI64_01430"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR00435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HET7241978.1"
                     /translation="MKIYNRLNNEFEKVIPEKDNNIRIYLCGVTTYDDCHIGHARTIL
                     VFDVLRRYLMYKGFTVIFVQNFTDIDDKIINRAKKEGITAEQISSRYIESYFEDFTKL
                     NVLMANKYPKATEHVEEMINLVEGLVKKKYAYITSNGVYFRVKRFESYGKLSKKSVEE
                     LQSGARIEIDALKEDPLDFALWKFSTDGPVWDSPWGKGRPGWHIECSAMALKYLGSRI
                     DIHGGGQDLIFPHHENEVAQSEAYTHELFSKLWMHIGIVTLKTEKMSKSLGNIITVKK
                     ALEKWGANTLRLYLLTTHYSKPIDYTDETLSEALQKWRQIEHCVYELKTTRKQKISSG
                     EFGITGQSMVDFKDSLDDNMNTSLAISSFLNLVSEVNKLSSLDMLTHQMCSVILPFVD
                     DMMKILGLKVLEVADEEKLKIEQLIDKRDNYRNEKQFLESDEIRRQLYDHYSVELTDH
                     SNYTTWKKIEKIPVQSSC"
BASE COUNT          868 a          374 c          479 g          675 t
ORIGIN      
        1 ggaaatagac caatatgttg ccttaacctc tttaaaatca cttggtataa agatagacaa
       61 acttacggat attcaactga agtatagtaa ttcttactag gaagtcgaag gtgttaatgt
      121 tgggctagtg ccatggtatt agcaggacgt tgcgttagtt acaaaataca agttccaatt
      181 aatactttat aagactcgtg aaacaaatta agtgaaaata aatatgacgt ggataaaagt
      241 ggcagaaact agtgaagtaa aggaaaagag tggaaaagaa ctcaatgtag aagggaatag
      301 gatagcactt ttcagggtta atggaaacta ttttgcaata gatgcgatat gtagacatca
      361 agacgggtcc cttgcgccag gcgccctcga cggagaaata gttgaatgcc ccttacattc
      421 gtggcactat aatatcagaa caggagcgtt gcttgactat ctggacgggg ttaaattgaa
      481 gacgtacaaa gtcgatatta gaggaaacga aatttatttg gatttctagg atttctacta
      541 tgtcaataca tttatcgtac acatagtcac aggttcattt tagcatgaag atttacaaca
      601 gacttaataa tgaatttgaa aaagtgattc cagaaaagga taacaatatt cgtatttacc
      661 tttgcggtgt aacgacatat gatgattgtc atattgggca tgcaaggaca attttggttt
      721 ttgacgtgtt aagaagatac ttgatgtaca agggattcac agttatattt gttcaaaatt
      781 ttactgacat cgatgacaag ataattaata gagcaaaaaa agagggcata acagctgaac
      841 aaatatcatc aagatacatt gagagttact ttgaagattt tactaaactt aatgttttaa
      901 tggcaaacaa atatcccaaa gctaccgaac atgttgaaga aatgatcaac ctcgtagagg
      961 ggcttgtaaa gaagaagtat gcatatatca catcaaacgg agtttacttc agagttaaga
     1021 ggttcgaatc ttatggaaaa ttatcaaaaa aatctgtcga agaactacag tctggtgcaa
     1081 gaattgaaat tgatgctcta aaagaggatc cattagattt tgcactttgg aaattttcaa
     1141 cagatggtcc agtatgggat agtccttggg gaaaaggaag gccgggttgg catatagagt
     1201 gttccgctat ggcattaaag tacttgggaa gcagaataga catacacggt ggggggcaag
     1261 acctaatctt cccgcatcac gaaaatgagg tggctcaatc agaagcatat actcatgaac
     1321 tcttttcaaa gttatggatg cacattggaa tagtgacatt aaagacagaa aaaatgtcta
     1381 aatctttagg gaacataatc acagtaaaaa aagctttgga aaaatggggt gcgaataccc
     1441 taagattata tctacttact actcattatt ctaaaccaat agattacacc gacgaaacgc
     1501 tttccgaggc cttacagaaa tggcgacaaa tcgaacattg tgtttacgaa cttaaaacaa
     1561 caagaaaaca gaagataagt agtggagaat ttggaatcac cggtcagagc atggttgatt
     1621 ttaaggattc actggacgat aacatgaata cttcgcttgc aattagctca ttccttaacc
     1681 tagtatctga agtaaacaaa ttgagctccc ttgacatgtt gacacatcaa atgtgttcag
     1741 tcatattacc attcgtagat gacatgatga aaatattggg tctgaaagta ttagaagttg
     1801 cggatgaaga aaaattaaag attgagcaac ttatcgataa aagagacaat taccgaaacg
     1861 aaaaacaatt tttagaatca gacgagatca gacgacaact ttatgatcac tactccgtag
     1921 aactaactga ccatagtaac tacactactt ggaaaaaaat agaaaagata cctgttcaga
     1981 gcagctgcta acgccgttct aaaattatga ttttgaatta gcaggttaaa taggtaatgg
     2041 catttgcttc caaacttata aatgaatttt taaaccatgt atttgactag actattactt
     2101 aaagccaaaa atgatcgtaa ctaacactgt ttccatttgc attcagatgg tcttgatttt
     2161 acatagatct tttgcaaaaa tttgacttgg ccttaatgga atctttagtt actcgatatg
     2221 gatgtcaact accagaagcg aaaaatgtaa tctgcaattg tgacgcacag gcagcatatt
     2281 aggactttat aaaaagtctt aatttcaatt acatgttcct gatggaacct ataaatggaa
     2341 tataagtcat aagtatttta gtactatcga ttaaggacca catgactcgc gagtga
//
LOCUS       DASSIK010000075         4417 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1304569, whole genome shotgun sequence.
ACCESSION   DASSIK010000075 DASSIK010000000
VERSION     DASSIK010000075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4417)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4417)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4417
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1304569"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(163..498)
                     /locus_tag="VFI64_01435"
     CDS             complement(163..498)
                     /locus_tag="VFI64_01435"
                     /inference="COORDINATES: protein motif:HMM:NF012575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HET7241979.1"
                     /translation="MEYRICNSKDIPNNFFKVFPVSNIHVVIGRVNEKLFAFDDSCPH
                     RGASLSKGELNGRRIVCYMHGYEYDMFSGKLEYVPPKWTDQSPEWIKSKDLKLFPVLE
                     KEDSIYVEM"
     gene            833..2137
                     /gene="asnS"
                     /locus_tag="VFI64_01440"
     CDS             833..2137
                     /gene="asnS"
                     /locus_tag="VFI64_01440"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004816 - asparagine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006421 - asparaginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HET7241980.1"
                     /translation="MYYRANDIKHNDFIGKTIWLRGWVYRIRKQKDKNFVLIRDDRGG
                     VIQCVFPSNIGSDLTIESSLEVKGTVLKDERAKEGGYEVRSEEIKVINIAPPDFPIGE
                     FQSTELLLDNRHLAIRSRKMIAMSKIRATVLQAARQWFIDNDWIEVNVPTIVKSAVEG
                     GSTLFSLKYYDDDAYLSQSAQLYLEALVFSLGPVWTLAPSFRAEKSRTVRHLAEFLHL
                     EAESPWIEMDDLLRNQEKLLCGIVQEIILERSEDLKYLNVDLSALNRIHEPFDRLKYD
                     KAIEILQSMEIKVQEGETTRPVVWGDDLNIDSERAITREKKRPIFIVGYPLEVKPFYV
                     KEDPLNHGVALSTDLLLPDGFGEVSSGGIREDNIENIRTRLKEQGLDLNSYSWYLDLR
                     KYGSVPHGGFGIGIERLIRWIINSNDIKECVLFPRTMSRVMP"
     gene            2227..3036
                     /locus_tag="VFI64_01445"
     CDS             2227..3036
                     /locus_tag="VFI64_01445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HET7241981.1"
                     /translation="MDSEPEKGAGSLFFELAGNLRLSMLSKFRERPYRLSHLATELNA
                     TMQETHRNITRLIEAGMVLKDSDGQHMLTPYGKTIVQIIPSLTFLFEQREYFIEHDTS
                     DLPVKFVQRIGSLGKCEVVHGVLAIVQRWKNLYLESGSYIKEIMGQVPVDLIEVLSSR
                     VDSGVKFYYIFGKDSVIPKGRSEILDKVGWKEFISRGLVARRMLERVKFMVILNEKEA
                     CVLFPNLKGEPDLNTMFYSQDREFHSWCDDLFELQWKLASTFDESKLMAEV"
     gene            3167..3397
                     /locus_tag="VFI64_01450"
     CDS             3167..3397
                     /locus_tag="VFI64_01450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HET7241982.1"
                     /translation="MPKAFVLMNAELGSEDSIVSELKTIDGVKEVYQVYGVYDIVAQV
                     EAEAMEKVKETITWKLRKLNGVKSTLTMIVMD"
     gene            3791..>4417
                     /locus_tag="VFI64_01455"
     CDS             3791..>4417
                     /locus_tag="VFI64_01455"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF012913.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase domain-containing protein"
                     /protein_id="HET7241983.1"
                     /translation="MEVNGYHGKTLDMLLKSHVTIGDHICIESTGGKYCGILIPRYEH
                     ATPDRIVVKLESGYNTGVSINKIKSIRKVEKPALAHSNKNSSTNRDQSSPSSTDLQLD
                     NTRSPDEKSTNPPPVSLISTGGTISSRVDYRTGGVSSALTASELYESVPELREYSSID
                     PEVLFTEYSENLTPEHWTIIANTVHEKILSQKYKGIIISHGTDTMHYTS"
BASE COUNT         1447 a          764 c          936 g         1270 t
ORIGIN      
        1 caaacagaaa aatgagatca cattaatctt caaagataac agattcttat tcgtaaaggt
       61 agaggacgga aagcttgtat gtgattcagt tccagaatga attggatacc gacaattctt
      121 tctttatccc atagttgcca aagcaaaatt aaatctgacc aattacattt caacgtatat
      181 actgtcttct ttttctagta cgggaaagag tttcaaatct ttacttttta tccattccgg
      241 actttggtca gtccatttgg gtgggacata ttccagcttt ccactaaaca tgtcatattc
      301 atatccgtgc atataacaca caatcctcct tccattcaac tctccctttg agagcgacgc
      361 tcccctgtgg gggcaagagt catcgaaagc aaacaacttt tcattaaccc ttccaataac
      421 gacatggata ttagatacgg gaaagacctt gaagaaatta tttggaatat ctttactatt
      481 acagatgcga tattccattt ttcagtcgta tcatttcttg caatccttta taagttcatc
      541 ttatttcttc cgctcttact ttgtattaca tatctgagcg ggtttgttag ctctagaaat
      601 cttgataatt ggataatgac agagactaaa gtcactgatg ataataataa ttaatgattg
      661 gtgcaggtaa atggaaagaa agtctacaga tggcatttgc cctttcttct ttctcttgtt
      721 tgactatctc cgtgaagtta acttaagaga tgataaggtg agtaaagcta tcagaaccag
      781 gaattgattg atattattaa taagtatgta agtaaatttg gttactcggt taatgtatta
      841 tagagcaaat gatatcaagc acaatgattt tattggaaaa acgatctggc tcagaggctg
      901 ggtctatcga ataaggaaac agaaggacaa aaattttgta ttaatacgtg atgaccgtgg
      961 cggagtaata caatgtgtat ttcctagtaa cattggttct gatttaacta tagaatcttc
     1021 tcttgaggta aaaggtactg tgcttaaaga cgaacgcgcc aaggaaggag gctacgaggt
     1081 cagaagcgaa gagataaaag tgatcaatat agcaccgcct gattttccaa taggagaatt
     1141 tcagagtact gaattgctac tagacaacag acacctagca attagaagtc gcaaaatgat
     1201 agctatgtca aaaattagag ctactgtgct tcaagcagca cgtcaatggt tcatcgacaa
     1261 tgattggatt gaagtaaatg ttcccaccat tgtaaagagt gcagtagaag gcgggtcaac
     1321 tttattttca ttaaagtact atgatgatga tgcatatctg tctcaaagtg cccagttgta
     1381 cttggaagcc ctagtttttt cattgggtcc agtgtggact ttggctcctt cgttcagagc
     1441 agagaaatca agaacggtca gacatctcgc agaattcttg catctagaag ctgaaagtcc
     1501 atggatagaa atggacgacc ttctcagaaa tcaggaaaaa ctactttgcg gtattgttca
     1561 agagatcatt ttggaaagat cagaagatct gaaatacttg aatgttgact tgtctgccct
     1621 aaaccggatc cacgaaccat ttgacaggtt gaagtacgac aaggcaatag aaattttaca
     1681 atctatggaa ataaaagtgc aggaagggga gacaactcga cccgtggtct ggggagatga
     1741 ccttaatatt gattccgaaa gagctattac tcgcgagaaa aagagaccaa tttttattgt
     1801 tggctaccca ctcgaggtta aaccttttta cgttaaagaa gaccccctaa atcacggtgt
     1861 tgcactctcg acagatttac tgttgcccga cggttttggt gaggtaagca gcggcggtat
     1921 cagagaagac aatatcgaaa atatccggac tagattaaaa gagcaaggat tagatttgaa
     1981 ttcatattcc tggtacctgg atctaaggaa gtacggctct gttcctcatg gaggttttgg
     2041 aattggaata gaacggctga taagatggat aataaattca aacgacataa aagaatgcgt
     2101 tcttttccca agaacaatgt ctagggttat gccttgattt ctgtatgcgc atagaagggt
     2161 accttgctac tatgagcgat actagctcct catgtttaaa ttcaagtctc gcggataata
     2221 ggtaaaatgg attccgagcc cgaaaagggg gcaggatcgc ttttctttga actggcagga
     2281 aatttgcgac tatccatgct ctctaagttc cgggaaagac cctataggtt gtcccatcta
     2341 gcaaccgaac taaacgctac aatgcaggaa actcacagaa acattacacg gcttatagaa
     2401 gctggcatgg tcttgaagga tagcgatgga caacatatgc tgacaccata tgggaagaca
     2461 attgtgcaga taattcctag tttgactttc ctgtttgaac aaagagaata ttttattgaa
     2521 catgacacaa gcgacctacc tgtaaaattt gttcagagga taggatcact tggcaaatgt
     2581 gaggtcgtac atggggtact agccatagta cagagatgga agaacttgta cctggaatca
     2641 gggtcctata ttaaagaaat aatgggtcag gtaccagttg atctcattga ggtcctaagc
     2701 tcaagagttg attctggtgt caagttctat tacatattcg ggaaagatag tgtaatacct
     2761 aagggaagaa gtgaaattct cgacaaagtc ggatggaagg aattcatatc cagagggctg
     2821 gttgcaagga ggatgcttga aagggtgaaa tttatggtaa tacttaatga gaaagaggca
     2881 tgtgttctct ttccaaattt gaaaggtgag cctgacctca acacaatgtt ttacagtcaa
     2941 gatagagaat ttcattcatg gtgtgatgat ttgtttgaat tgcaatggaa attggcttcc
     3001 acattcgatg aatcaaagtt aatggcagaa gtatagattg tcatgttttt tttgactgga
     3061 tttacgtagg aagccttttg ttcctgtaaa aaactgaaag ataatttcca agtgataaca
     3121 attatgttgc atcatctttt tatatttcga acgtacgaga ttgattatgc caaaggcctt
     3181 tgttctcatg aatgcagagt taggtagcga agattctatc gttagcgaac tgaagactat
     3241 tgatggagtc aaagaagtct accaagttta tggtgtttat gatattgtcg cacaggtaga
     3301 agctgaagca atggagaaag ttaaggaaac catcacatgg aaattaagaa agcttaatgg
     3361 agtaaaatcg acccttacaa tgatagtaat ggactaaaat gagtatctag ataggggata
     3421 tttgtatgat ttgcccttaa ctagactgat tatgctccca gcagatttac caaaaatatc
     3481 aaatgtatta ttattactat tagcagaaac ggctgagtat ggctagcatg atattgtttg
     3541 atagtcttgg acaaaagtag ttctaatcag aaaatcacaa tattgtaagg aaattagaaa
     3601 ctagtacggt tagtaagatt tcattctata caatatcatt tttttatgct gtgttgcttg
     3661 gacagataat tgatcttgta ccaatcttga atattatcac agaaggcaac tgatgaactg
     3721 ggataataac aaaaatctgg attaattcat gattaactac aaaaggaggt tcatggatac
     3781 gatcaattga atggaagtaa atgggtatca tggaaaaaca cttgatatgt tgttaaagtc
     3841 ccacgttacg ataggggatc atatttgcat agaatccact ggaggcaaat attgtgggat
     3901 tttgataccc aggtacgagc atgccacgcc tgaccgcatc gtcgtcaagc tggagagtgg
     3961 atacaataca ggtgtatcaa taaataaaat aaaaagcatc agaaaagtcg aaaaaccagc
     4021 attagcccat tctaacaaaa attcttcaac aaatagagat caaagctcgc cgagttcaac
     4081 agatctgcaa ctggataata ctcgtagccc ggatgagaaa tctacaaatc ccccacctgt
     4141 ttcgttgata agtacaggcg gcacgatttc gagcagagtt gactatagaa cgggaggcgt
     4201 tagttctgct cttactgcgt ctgagctgta tgaatcagtt cctgaactaa gagagtattc
     4261 atcaatagat ccagaagtac tcttcactga atacagcgaa aacctgactc cagaacattg
     4321 gaccattata gcgaataccg ttcatgaaaa aattctctcc cagaagtaca aaggaataat
     4381 aatatcacat gggactgaca cgatgcacta tacctct
//
LOCUS       DASSIK010000076         2647 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_901733, whole genome shotgun sequence.
ACCESSION   DASSIK010000076 DASSIK010000000
VERSION     DASSIK010000076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2647)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2647)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2647
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_901733"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..384)
                     /locus_tag="VFI64_01460"
     CDS             complement(<1..384)
                     /locus_tag="VFI64_01460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241984.1"
                     /translation="MSNDLQVVTENAQIFIILFTGILTILVLASSPLWHFVSPAFARA
                     KITTEVQNLTDSSLKSQLITRGLKAPSAMAFIGPNDILVTEKNRGNVQRITNGIISSQ
                     PLLHVDTPKKDERGLLGLATSRNIDI"
     gene            complement(499..909)
                     /locus_tag="VFI64_01465"
     CDS             complement(499..909)
                     /locus_tag="VFI64_01465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241985.1"
                     /translation="MKRIIKMNALSVIKCVCGLAIGIFLVTNALHMSVYAKPAVSVSP
                     SCGPKSGVNVSIKANGFAADEIASWELKDSDGKTRLNGYFHTDSDGNVNDQTSIEDVE
                     KGHYQIYFGYDTNYDGRLDSEIDHSEITIPCQNK"
     gene            1230..2231
                     /locus_tag="VFI64_01470"
     CDS             1230..2231
                     /locus_tag="VFI64_01470"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HET7241986.1"
                     /translation="MTFSFSLILLITLGSILPNVLPSAYATPHLAGVGDWGCSSNTKN
                     TVKNIVNHAAPTTLALGDNSYQSTGTCWYNIVKPLDGDADINNPKRLKITIGNHDDTP
                     SALLNSYKKHFHLDKLYYSVNREYVHILVLNSEDPNRSNKNSDQYKFVQTDLQAASNN
                     SNIKWIIVEVHQPFFTSPNGCSASSCKGSKSFTQTYQPLFDQFKVDLVLFGHVHNYQR
                     TFPVKFNPANPLNPTKTDNTRCDYTNPTTIYGIVGTGGINFHSLNSNKKAPFVAIQQA
                     SRFGQLDLTFSNNGNTLTGQFFSNEPGTAGQCVASSNILDRFTITKTLGASTVFLWF"
     gene            complement(2395..>2647)
                     /locus_tag="VFI64_01475"
     CDS             complement(2395..>2647)
                     /locus_tag="VFI64_01475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241987.1"
                     /translation="ANQEILFSKVAQQVGHFDNPWLLFSKYIDAVNEKCTQTVLPKWE
                     SRLGGAGVFMSTHCFSMSEAERVDPTLQALTQNSTFIYR"
BASE COUNT          837 a          525 c          474 g          811 t
ORIGIN      
        1 aatatctata tttcgtgaag tggccagtcc aagaagtcct ctttcatctt tttttggagt
       61 atcaacatga agcaatggtt gactcgaaat tataccgttt gttatcctct ggacatttcc
      121 cctattcttc tcagtaacta aaatatcatt tgggccaatg aaagccatag cacttggcgc
      181 tttaaggcct cttgttatta attgggattt tagactagaa tccgtgagat tttgaacttc
      241 agttgtaatt tttgccctag caaacgctgg ggatacaaag tgccacaaag gggatgaagc
      301 aagaactaag atggtaagaa ttcctgtaaa tagaattatg aatatttgag cgttttccgt
      361 tactacttga aggtcattcg acaactttat aattgatata agaaccactg cccatagaat
      421 ttattctgat tgtagttcat aattgagcaa gaagaatgag atatgctgct gcactaattc
      481 gaagaaatcc aagattactc acttattttg gcatggaatg gttatctctg aatggtctat
      541 ctcagaatct aaccttccat catagtttgt gtcgtagcca aaataaattt ggtaatggcc
      601 tttttccaca tcttctatcg acgtctggtc gttaacatta ccgtcgctat ctgtgtgaaa
      661 ataaccattt aaccgtgtct ttccatcaga atccttcaac tcccaagagg caatttcgtc
      721 agccgcgaac ccatttgcct ttatcgaaac attgacacca gattttggtc cacatgaggg
      781 agaaactgat actgcaggtt tagcgtacac actcatatga agtgcattgg taacgagaaa
      841 aatgccgata gctagaccac aaacacattt aataacagat aaggcattca tttttatgat
      901 tcgtttcata aaatgactat taagcagttt gcaactaaat tacggaagta gtgtgagtca
      961 aacagtatat ttatcattga agaatgttag tttgttttgt gtcaatactg ttgccaggaa
     1021 gtaatagttt tatactgttt ttagtttgta ttttactagc ataaaatagt aaactagaac
     1081 ataatgtata tcaaatgatc acaatcgata ataacacaat gacaatctct tgatcaattc
     1141 ccatataatc taactatcaa atacatatat tgcaagtttg atatgattaa aaaatgtcag
     1201 gcttagaata tcgcgagggc ctatgctttt tgacattttc attttcacta atacttttaa
     1261 ttactttagg aagtattctt ccaaatgtac tgccttctgc gtacgcaaca cctcatttgg
     1321 cgggtgttgg agattggggc tgcagcagta ataccaaaaa taccgtaaag aatattgtta
     1381 atcacgctgc tcctacaact ttggctttag gagacaattc ttatcaaagc acggggacat
     1441 gttggtataa tatagtaaaa ccactcgacg gtgacgcaga tataaacaat ccaaaaaggc
     1501 ttaaaattac aatcggcaac catgatgata ccccaagcgc gttactaaat tcgtataaaa
     1561 aacattttca cttggataaa ttatactatt cagttaaccg agaatatgtc cacatcctgg
     1621 tgctgaattc agaagatcca aacaggagta acaagaactc tgaccaatac aagtttgttc
     1681 aaactgactt gcaagcggct agcaacaatt ctaacataaa atggataata gtagaagttc
     1741 accagccatt cttcacctct ccaaatggct gcagtgcaag ttcgtgcaaa ggaagtaaat
     1801 cattcacaca aacttatcaa ccactattcg atcaattcaa agttgatcta gtcctgttcg
     1861 gtcacgttca caactatcaa cgaacgttcc ctgtaaagtt taatcctgct aatcctttga
     1921 acccgacgaa gactgacaat accaggtgcg attataccaa tcctacaaca atatatggca
     1981 ttgtgggcac cgggggcatt aacttccata gtctgaattc aaacaagaag gcaccgtttg
     2041 tggccatcca acaagcaagc aggttcggtc aattggattt gacgtttagt aacaatggca
     2101 atacccttac tggacaattc ttttctaatg agccaggcac agcaggtcaa tgtgttgcat
     2161 catccaatat actagatcgc tttaccataa caaaaacact tggagcatcc accgttttcc
     2221 tttggttctg attcacatat tgaaactcag ttaattagcg cttaccgaat tatagatata
     2281 ctgctaattt gccacgagga taatcgttga gggattttga tattactaca catcagatgg
     2341 tgagatggtg gtctaaacca ttcttgtata tgccatcgtt tagaaaaaac tttttcatct
     2401 gtagataaaa gtactattct gagttagcgc ctggagagta ggatcaactc tctccgcttc
     2461 tgacatggag aaacaatgag ttgacatgaa taccccggct ccaccaagtc tactttccca
     2521 ctttggtaat acagtttgtg tacatttttc gtttactgca tcaatatact tggagaaaag
     2581 caaccacgga ttatcaaagt gacctacttg ttgtgcaacc ttgctgaata ggatctcctg
     2641 atttgct
//
LOCUS       DASSIK010000077         2147 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1097816, whole genome shotgun sequence.
ACCESSION   DASSIK010000077 DASSIK010000000
VERSION     DASSIK010000077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2147
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1097816"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            234..1634
                     /locus_tag="VFI64_01480"
     CDS             234..1634
                     /locus_tag="VFI64_01480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241988.1"
                     /translation="MLLVCGSFVLNARTEAEEEMYSVNSLFIGIFSNGDVLIQDDIKP
                     KLGVMELSVKLLGENVTNLSIKNYSSHELPYYVNVNSNELKIKPQGSSQIRITYETST
                     LVDKVGRLWTFSVNSTSAFTLKLPNDVVVTSLGEHPPRLIRRLGGQELLTFDPGRAIV
                     KYILGYIGTKEQAETAINSAEMAIADTEKSHQGIRMNEAIKKLEQSKISMNRGNFPEA
                     ESLATNASDLLNKLSSDFELAKNSISAATTHMKDASTNNKDLIRADKFISESRRQFAS
                     GNYTAAAEFARMAKENIISQAGNNEQNITQSLAIIFGIVLIIAFVLLLYFKKFRYIIH
                     IRYPKKSSRVADQDDSHGTRNEGSRLTDEMTKDSTAITTESVSEDMSQPMQESEIYRR
                     VNELILGHPDLKREDREVLNFLARNEGAAFEGEIRTKFLLPKTSIWRLVKRLERLELI
                     EIVKIGGQNLIKLKIQ"
BASE COUNT          737 a          394 c          414 g          602 t
ORIGIN      
        1 atatctaaat acagtggtag aataaaaccg agactcaatg gtacgtaagt ttgaatcatt
       61 taagcgagtt ctatttcagt tatctaaaaa tgttcctata aacagttccc ctgatcacag
      121 taaaccaatt gtaccttctc ataaagctta tatcatttta tgggtctgat ataaacgtgg
      181 gttgtcatag cccaagttgg aggaggtttc atttcaaaac ttgtataact ctgatgctac
      241 ttgtctgcgg aagctttgtt ctgaacgcaa gaacagaagc cgaagaggaa atgtactcag
      301 ttaattcgtt attcattggg atattttcta acggtgacgt cttgatacaa gatgatataa
      361 aacctaaatt aggtgtgatg gaattatctg taaaactatt gggagaaaac gttaccaatc
      421 tctcgattaa gaattattct tctcatgaat tgccatacta tgtgaacgtg aattcaaatg
      481 agcttaagat caaaccccaa ggttcatccc aaataaggat cacctacgag acgtcaacac
      541 tcgtggacaa ggtgggcagg ctctggacat tttcggtaaa ctcgacctcc gcctttacgc
      601 tcaaattgcc aaatgatgtt gtcgtcacaa gtttgggaga acatccacct cgcttgatac
      661 gaagactagg tggacaagaa ttgcttacat tcgacccagg aagggccata gtcaagtata
      721 tcctgggata tattggcacg aaagagcaag ctgaaacagc aattaattct gcagaaatgg
      781 ccattgccga tacggagaaa agccatcaag gaatacgtat gaacgaagca ataaaaaaac
      841 tggagcaatc taaaatttcg atgaacagag gcaattttcc tgaagccgag agtcttgcaa
      901 ccaatgcttc cgacctacta aataaattat ctagcgattt tgaacttgcc aagaattcaa
      961 ttagcgctgc aacgacccat atgaaagatg catcaacaaa taataaagat ctcattaggg
     1021 cagataaatt tatttctgaa tcgaggaggc aatttgcttc tgggaactat acagccgcag
     1081 cagagtttgc gagaatggca aaggagaata tcatttcaca agctggaaat aacgaacaaa
     1141 atattacaca gtcccttgca ataatctttg gaatcgttct aataatagca tttgtcttat
     1201 tgctatattt taaaaaattt agatacatta tccatatacg ttacccaaaa aagtcatcaa
     1261 gagttgctga tcaagatgat tcacatggaa cccgcaatga agggtctcgt ttaactgatg
     1321 aaatgacaaa agacagtact gctattacaa ccgagagtgt tagcgaagac atgtcacaac
     1381 caatgcaaga atccgaaatt tatcgacgtg taaatgaact cattctcggg catcctgact
     1441 taaagaggga agatagagaa gtgctaaatt ttcttgctcg aaatgaaggt gcggcctttg
     1501 aaggagaaat aagaactaaa ttcttgttac caaaaacaag tatatggcga ttggtgaaac
     1561 gccttgaaag gttggaacta attgaaatag taaaaatagg tggccagaat ttgataaaac
     1621 ttaaaattca ataagtgtag ctctgttcac aactccctgt aaaactccag tgcaaatcaa
     1681 ttgggggagc gtgatatatt caattattca aataagcact gcccgagata tatgtaaggt
     1741 aatataagaa agaattgaat tccccaggat cctgaactcg cactgaatag ctgaccttat
     1801 atatatccga aaccgtggga tttaccagaa caaattgacc gaatgttaat ttggaatctg
     1861 gctgacttaa ggaattgact ttaatttaga ttctttcaaa tcttgaattt tttgttgtgg
     1921 caattgtgaa attttcaggc gacgcaaatt tgataatcgt cctcccccaa aatcagctgc
     1981 taatcttcag atatgaatag taagttactg aaaaggagac cataatcttt attcactcca
     2041 tagtcaatga gcaatatatc acgtgatctt gtctcttaga acctatccca aaaatattga
     2101 cttcctaggc tttcctattt gaccaataga gatttagctt gacatga
//
LOCUS       DASSIK010000078         2517 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1195717, whole genome shotgun sequence.
ACCESSION   DASSIK010000078 DASSIK010000000
VERSION     DASSIK010000078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2517)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2517)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2517
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1195717"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..371
                     /locus_tag="VFI64_01485"
     CDS             <1..371
                     /locus_tag="VFI64_01485"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HET7241989.1"
                     /translation="RFDPNNPMTSGFVNERNLSIAKEVQIIATEKNKTPSQVALSWLR
                     HRSDRGVIIPIVGARSRAQMRDNLGSLDVDLSLDQLKRLDDISKIELGFPHDFLSSDM
                     IKTLLYGNTYSSIDYHRAGS"
     gene            373..984
                     /locus_tag="VFI64_01490"
     CDS             373..984
                     /locus_tag="VFI64_01490"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HET7241990.1"
                     /translation="MTHIESGLKLNVLGVGSSMRQGSYSTAALNMILDMAKGNEAETK
                     LLDLRQTNLPMLYAAKDDTHEIGRVTELVEWADAYILATPDYHGSMSGSLKNFLDYFW
                     SEFAGKTFGYIVASHEKGLTVMDQMRTAVRQCYGWSIPYGISINPEDDFNDKKEVINK
                     KLWSRLDMLARDLVVYGKLIRKQFVNDLLQSAPVNTFAAYYKK"
     gene            1077..2036
                     /locus_tag="VFI64_01495"
     CDS             1077..2036
                     /locus_tag="VFI64_01495"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HET7241991.1"
                     /translation="MKSIAFGTHLPVMGFVREETVSREQLISFAQKAEELGYNSLSVN
                     DHIVFRTGWLDAISSLSAIAATTHRIKIGTSILNIVIRNPVICAKALSSIDILSSGRL
                     FVGLGPGSHKGDYDACGIPFEDRWKRFSEALEVIHALWNDKDDTKSSLVDYEGKYYRL
                     KGVSIDPKPFQKPRPPIMIASWGSEQGLRRVAKYGDGWMASAYNITPDKFKEKWNQLL
                     TYRRELNKDVESFENSVMTMFGYIANDKEKVHRMVKEILSPALGRSADELENLLLFGS
                     TDQCLKKIDLLYESGVKRIHFWPVNDYIEQIEIFFKEIAQNFG"
     gene            complement(2184..>2517)
                     /locus_tag="VFI64_01500"
     CDS             complement(2184..>2517)
                     /locus_tag="VFI64_01500"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0030638 - polyketide metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ester cyclase"
                     /protein_id="HET7241992.1"
                     /translation="EIISPDYIDHGQSAYMGAAGLGVAGAKNDLKYSLDKLDELSYFV
                     EELIASPNYPDLVGAYWKGTLTPKATSAHTQQTMKKINYRGISIYRIQNGKMVETWHV
                     VDGWPSNL"
BASE COUNT          829 a          430 c          510 g          748 t
ORIGIN      
        1 aaaggttcga ccctaacaat ccaatgactt ccgggtttgt gaacgaaaga aatctctcaa
       61 tagcaaagga ggtacaaata atagcgacgg aaaaaaacaa gacaccatca caagtcgcat
      121 taagctggtt aagacataga agtgatagag gagtcataat accaattgtt ggagctagat
      181 ctagagctca aatgagggat aatcttggtt ctttggatgt tgatttatca ctagaccaat
      241 tgaaaagatt agatgacata agtaaaattg agttgggatt tccacatgat tttctttcct
      301 ctgatatgat caagactttg ttgtatggaa acacatactc atcgatagac tatcatcgag
      361 caggatcata aaatgacaca tattgaatca ggccttaaac tgaatgtttt aggtgtaggg
      421 tccagcatgc ggcaggggtc ttacagtact gccgcattga acatgatatt ggatatggct
      481 aaaggtaacg aagcagaaac aaaactctta gatttacgac aaacaaattt accaatgtta
      541 tacgcggcta aagacgacac acatgaaata ggtcgggtga ccgaactagt tgaatgggct
      601 gatgcatata ttcttgcaac accagattat catgggtcaa tgtcaggctc acttaagaat
      661 ttcttggact acttttggtc agaatttgca ggcaaaacat tcggatatat tgttgcatcc
      721 catgaaaaag gtcttacagt tatggaccag atgcgtactg cggtaagaca atgctacggt
      781 tggagtatac cgtatggcat atcaataaat cctgaagatg attttaatga caaaaaagaa
      841 gttatcaaca aaaaattatg gtcacgttta gatatgctag ccagagattt agttgtgtat
      901 ggaaaactaa taaggaaaca atttgtgaac gatttacttc aaagcgctcc tgtcaatacc
      961 tttgctgcat attataaaaa ataggataat tgagagcaat agcacaaatt cctgcatctt
     1021 gttcataaaa ttcaaagctc agcacaacta tatgtatcgt ttacattaag atgttgatga
     1081 aatcaattgc cttcggaaca catctacccg tgatgggatt cgtacgagag gaaaccgtat
     1141 cacgagaaca gttaatctcg tttgcacaaa aggcagaaga attaggatat aactcattga
     1201 gtgtaaatga tcacatagtt ttcagaaccg gttggcttga tgcaataagt tcactatcag
     1261 caattgctgc tactactcat agaataaaaa ttggtacatc tatactgaac atagtaataa
     1321 gaaatccagt tatctgtgct aaagctttat cctcaataga tattttatct tcaggtagat
     1381 tattcgtagg cttgggtcca ggttcgcata aaggagacta tgatgcttgt ggaattcctt
     1441 ttgaagatcg gtggaagagg ttttctgagg ctttagaggt tattcatgca ctttggaacg
     1501 acaaagatga tactaaatca tcgttagtag attatgaagg taaatactat agattaaaag
     1561 gcgtgtctat cgaccccaaa ccgtttcaaa aacctcgtcc tcctatcatg atagcaagtt
     1621 ggggttctga acaagggcta agaagagtag caaagtacgg agacggctgg atggcatcag
     1681 cttataacat tacaccggac aaattcaaag agaaatggaa tcaacttctg acttatagaa
     1741 gagagctgaa taaggatgtt gaatcatttg aaaactctgt catgacaatg tttggatata
     1801 tagctaatga taaagagaaa gtccacagga tggtaaaaga gatattgtca ccagctctag
     1861 gaaggtctgc tgatgaacta gagaatttat tgctttttgg gtctactgat caatgcctta
     1921 aaaagattga tctcctttac gaatcaggag taaaacgtat tcacttctgg ccagtaaatg
     1981 attacataga acaaatagag atatttttta aagagatagc ccagaatttt ggttagatta
     2041 gattataacg gattgctgag ttttttcaaa ttccagacgt atcctctctg aaaaggaggt
     2101 cttgaatcca actccctttc tatatggcta tgatagttat taatcctgta tacttgtata
     2161 actcaaatta aagtttccac cttttagagg tttgatggcc aaccatcaac tacatgccag
     2221 gtttcaacca tttttccatt ttgaattcgg tatatgctta ttcctctgta attaattttc
     2281 ttcatagttt gttgagtgtg agcagaggtt gcttttggtg tcaatgttcc tttccaatag
     2341 gcacctacaa ggtctggata atttggtgat gctatcaatt cttcaacgaa ataactgagt
     2401 tcatctaatt tatccaatga atatttgagg tcattctttg ctcccgcaac tcctaatcct
     2461 gcagcgccca tataggcaga ctggccgtgg tctatgtaat cgggagaaat tatttca
//
LOCUS       DASSIK010000079         2611 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_608819, whole genome shotgun sequence.
ACCESSION   DASSIK010000079 DASSIK010000000
VERSION     DASSIK010000079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2611)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2611)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2611
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_608819"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            124..828
                     /locus_tag="VFI64_01505"
     CDS             124..828
                     /locus_tag="VFI64_01505"
                     /inference="COORDINATES: protein motif:HMM:NF014670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="creatininase family protein"
                     /protein_id="HET7241993.1"
                     /translation="MSDPDIRSIRDKVEQVLIPVGSLEQHGEHLPVSTDSIIVEYIAN
                     MISKKIPSLVLPAIVYGVSYEHKPLFNISISSSALSDILSEVCISLIENGLNNVIILN
                     GHHGNAGLLQYIPQIVERIKFQDANINSINYWQLLGRDFDHAGFVETSLVLAIRPELV
                     NMKKAKKGAEDRTLLRQVTSSYLNRPSSFTKITKNGVWGDPSYASPNEGKKLLNHVIN
                     NLLMVIRQFNDLSKRS"
     gene            1018..1245
                     /locus_tag="VFI64_01510"
     CDS             1018..1245
                     /locus_tag="VFI64_01510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LSm family protein"
                     /protein_id="HET7241994.1"
                     /translation="MSVDMAVKVLDESLGKVVLIKLKGGKVIRGNLHGFDQHMNLLLQ
                     DSVELLDDKANELGTIVVRGDNVVIISPPRA"
     gene            1280..1450
                     /locus_tag="VFI64_01515"
     CDS             1280..1450
                     /locus_tag="VFI64_01515"
                     /inference="COORDINATES: protein motif:HMM:NF003214.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L37e"
                     /protein_id="HET7241995.1"
                     /translation="MTKGTTSMGKFTRKKTHIKCRRCGHNSFHKRGMRCAKCGYPDAR
                     LRKYDWIKRQVM"
     gene            1550..2287
                     /locus_tag="VFI64_01520"
     CDS             1550..2287
                     /locus_tag="VFI64_01520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241996.1"
                     /translation="MDFTLITASMVTGVVTSIIFNGLMGHGQVKSKGKSDISQLSSSA
                     ANIQVLESLKIENDIIKEGIAKIYEAFNDDKISKLEYDRLMVKYTEDLRICDERIKDL
                     QPIIDIFELKDLRNGLVSLIENRIKNIDEKLDKLSSTTIMKSHGIRTSGIDPISKGSR
                     HVEPDAIKSQKFGVQILLSATLEQIRIERLQKEVLAALSKLDKSSESHASDSSDANKV
                     LPIRGDGKLESITFSEKQKRDALCNFS"
     gene            complement(2393..2530)
                     /locus_tag="VFI64_01525"
     CDS             complement(2393..2530)
                     /locus_tag="VFI64_01525"
                     /inference="COORDINATES: protein motif:HMM:NF039193.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5679 domain-containing protein"
                     /protein_id="HET7241997.1"
                     /translation="MEGYCVKCKSKRSMNDEKKVTMKNGKPATQGICSVCGTKMFRIG
                     K"
BASE COUNT          891 a          441 c          521 g          758 t
ORIGIN      
        1 gcataaatat ttcgatggaa atcgatataa ctagagatcg tttgaactaa cgaatcagat
       61 gctattgata gtttataacc caatttatgt attgaacact tgtcgataat gaagattttt
      121 gagatgagtg atcccgatat aagatcaatt cgagataaag ttgaacaagt tctaattcca
      181 gtcggttcac tggaacagca tggagaacat ttgcctgttt ctacagactc tatcatcgtg
      241 gaatatatcg caaatatgat atcgaagaaa atcccatctt tagtacttcc tgcaattgtc
      301 tacggagtat catatgaaca taaaccactg tttaacatat ccataagtag ctctgcattg
      361 tcagacattt tgagcgaggt atgtatttcc ttaattgaaa atggtctcaa taatgtaatc
      421 attctcaatg gtcatcatgg aaacgcggga ctattacagt acatacctca aatagttgaa
      481 cggattaaat ttcaggatgc aaatataaac tctataaatt attggcaatt actgggtagg
      541 gattttgatc atgcaggatt tgttgaaacc tctcttgtgc tggcgataag accggaacta
      601 gtcaacatga aaaaggctaa aaaaggagca gaagatcgca cactattacg gcaagtaact
      661 tcatcctatc taaatagacc atcttcgttt acgaaaatta ctaagaatgg tgtatggggt
      721 gacccctcat atgcatcacc gaatgagggg aaaaaattgt tgaaccatgt aataaataac
      781 cttctaatgg ttatacgtca atttaatgac ctttctaaaa gatcatgact aagtcctgat
      841 tggcactacg aacatgtcaa aaatgttctc gtaattcata aaaattgcga aagctaaatt
      901 gtgactctga atataacgat gttttctaat tcatcaaagt aaatattaga agtggaataa
      961 gtccaaatta actttaatat agaccttcat caaccaatat tcttggtaga gtagtaattg
     1021 tctgttgaca tggctgttaa agtgcttgac gaaagtctag gaaaagttgt tctaattaaa
     1081 ttgaagggcg gaaaagtgat tagaggaaat cttcatggat ttgaccaaca catgaatttg
     1141 ttgttgcaag attctgtcga attgttggat gataaggcta acgagttggg aacaattgtg
     1201 gtgagaggcg ataatgtggt aattatttcg ccacctcgag cataataatt tctggcctct
     1261 tgttggatag tggaacaaaa tgactaaagg aacaacatca atggggaagt tcacgagaaa
     1321 aaaaactcac ataaagtgta gaaggtgtgg gcataattct tttcataaaa ggggtatgag
     1381 atgcgcaaaa tgcggatatc ctgatgcgcg cctacgcaag tatgactgga tcaaacgcca
     1441 agtcatgtag taggaaaatt agccgacctg taacttaatt aaatggtctt aaaacgaagg
     1501 cggtatggga caatatttat catactcttt atataatcga agataaacat tggactttac
     1561 tctaattaca gcgtcgatgg ttacaggagt agttacgtca atcatattta atggactaat
     1621 gggacatggg caggttaagt caaagggaaa atcagatatt tcgcagttgt cgagttctgc
     1681 ggcgaacatc caggtacttg aatctctcaa aattgaaaac gacattatca aggaaggcat
     1741 agccaaaatt tacgaggcct ttaacgatga caagatatcc aagttagagt atgacagact
     1801 gatggtaaaa tatacagaag atttacggat ttgcgatgaa aggatcaaag atcttcagcc
     1861 gattatagat attttcgagt tgaaggatct acgaaatggt cttgtttcat tgatagaaaa
     1921 caggataaag aatatcgacg aaaaattgga taagttgtca tccaccacca tcatgaaatc
     1981 tcatggaata cgaaccagtg gtatagaccc catttccaaa ggatcacgac atgtcgaacc
     2041 ggatgcaatc aaatctcaga agtttggagt tcaaatccta ctatcagcta cgctagaaca
     2101 aataagaatc gaacgactcc aaaaagaggt attagccgca ctatctaaat tggataagtc
     2161 cagcgaaagt catgcgtcag attcttctga tgcgaacaaa gttttgccga ttcgcggaga
     2221 tggaaaatta gaatctataa cttttagtga gaaacaaaag agagatgcat tgtgcaactt
     2281 cagttaacat tatcaggccc aggtagtctg gttcgtggaa ggtaaaacaa acagggaacc
     2341 tttgcacata ttaagaaaat agcgactaaa ttgcacttgt agtactattc ttctatttgc
     2401 ctattctaaa catcttcgtg ccacaaactg aacaaattcc ttgggttgca ggttttccgt
     2461 ttttcatcgt taccttcttt tcatcattca ttgacctttt ggacttacat tttacacaat
     2521 atccttccat aggagctcca atatctttac cgcataaaaa atgttgtgtg caaaatcatt
     2581 gtcagaatga gcgatggtta ttgcctatag t
//
LOCUS       DASSIK010000080         4783 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_212988, whole genome shotgun sequence.
ACCESSION   DASSIK010000080 DASSIK010000000
VERSION     DASSIK010000080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4783)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4783)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4783
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_212988"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            321..1412
                     /locus_tag="VFI64_01530"
     CDS             321..1412
                     /locus_tag="VFI64_01530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241998.1"
                     /translation="MKRKAQIRLWTSLLLLVGALLLNGIVFTNAFAHLPHTPHYNGGS
                     NRDGVGKYYPYLALDPEYTQPDYPTQIMFSIQDFGGNDVYNIATMVEIYDEISGNRIK
                     VFPWTLHEIGDFEYYYTFPRVGNYQIVLSVATDNAKIDIGQFDPPRSILGSNSDCACD
                     RAIFNITVSNTWGNIRNSLFAIAVIFPIVTLGIILGTSYRKRQKYNQSKKSQNREVIK
                     YGIMLLAIAGGLVHLAIFPEHGSQQIYYSVFLLTAACVQVAYGILYILVNLAGDTESR
                     YDRHSLIAKYRKTLFVNLFGLIGTGVLVGLYIYVVLFPPPLSPTNTPEIVDIAGILAK
                     TVELLLIGGILSLMIWEKRKLHNLIIRLN"
     gene            1419..1691
                     /locus_tag="VFI64_01535"
     CDS             1419..1691
                     /locus_tag="VFI64_01535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7241999.1"
                     /translation="MRLSRAKSKDIFSKIISISCNGDNDRMDTTDNISQVVTESELDS
                     DILIIFVFGSTSAIETTEPRRGLKIEIPFMVSRLIPLNTIYKYDIT"
     gene            complement(2057..2425)
                     /locus_tag="VFI64_01540"
     CDS             complement(2057..2425)
                     /locus_tag="VFI64_01540"
                     /inference="COORDINATES: protein motif:HMM:NF042555.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6659 family protein"
                     /protein_id="HET7242000.1"
                     /translation="MPQTNTDDLCLQFLNLSGEIRFAGVIDRMGGLIAGGMKEGIESL
                     ENEEESIKLYLGYAFNNAVRQDFDPTFGKVLYTVSEREKLKLATFPFGDNILLVSMSK
                     QAPHLEIIDNILHILRKSSL"
     gene            2814..2981
                     /locus_tag="VFI64_01545"
     CDS             2814..2981
                     /locus_tag="VFI64_01545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242001.1"
                     /translation="MADELIAYAITAGCFIGWGIICGAARARRISSNPLIGVSGEKKV
                     KYSSDGKPIGD"
     gene            3750..4445
                     /locus_tag="VFI64_01550"
     CDS             3750..4445
                     /locus_tag="VFI64_01550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3ae"
                     /protein_id="HET7242002.1"
                     /translation="MVIGCVAMAKGAKRGGRVRDKWRDKQWLIVNAPHAFGGNHLNYI
                     PITNPETAKGRVIENTMYDILKQDPNQHQIKVFMEIDKIEQGIATTLFKGHEYAKEFL
                     RSLVRRGSSMVNYVEDYTTSDGYTFRVATVAFSQRRLNSSKKHQLRIISHQLLSEQMP
                     KLTVEQFIEDVTKGKLSMDLLAACKKVASLRHVGIKKSKLISTPESRAMQGTKLFKDN
                     IVDKEENIQETPS"
     gene            4457..>4783
                     /locus_tag="VFI64_01555"
     CDS             4457..>4783
                     /locus_tag="VFI64_01555"
                     /inference="COORDINATES: protein motif:HMM:NF013994.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding domain-containing protein"
                     /protein_id="HET7242003.1"
                     /translation="MNNDARDPIELGGATISVVIHATEDKDKVISKIVKVLSLNSARF
                     QEFNTKGHWGNHIVLLNLSLGQTLAGKILKTIYTSLGDNKKTAFLSSLEQSIDEKYNL
                     YVRIDKQ"
BASE COUNT         1498 a          868 c          962 g         1455 t
ORIGIN      
        1 gtcctcaatc accttacgct ggcgatcccg tattgcccga aagggaaaat tttccaaaac
       61 ttctgtaatt tttaatgaat tcatatggtg gcgttagaaa gttcaagtga ataaagtagc
      121 cttaaattct ttctcttcta ctcagataaa tctcattatg aattcatgtt ttggaccatc
      181 atttcacatt atggttgaca cgatagacgt ttgagcattt tccgtaatgt gttcttcggt
      241 catatctttt attggatgtc aacgttatcg cggcataacg acttatatga tcttatactg
      301 ttaaatagtc tctacaaggc ttgaaaagaa aggcacagat aagattgtgg acgtcactgt
      361 tattgttggt cggcgcatta ctcctcaacg gaatagtttt tacaaacgcc ttcgctcatc
      421 taccgcatac cccacattat aatggcggtt ctaacagaga cggtgttgga aaatattatc
      481 cttatctcgc tttagatcct gagtataccc aaccggacta tcccacgcag ataatgttta
      541 gcatccagga tttcggtgga aatgacgttt acaacatcgc aacgatggtg gaaatttatg
      601 atgaaatttc gggaaataga atcaaggtgt ttccatggac gctacacgag ataggagatt
      661 ttgagtatta ttacacattt cctagagtag gaaactacca gattgtcttg tctgtggcaa
      721 ctgacaacgc caagatagac attggccaat ttgatcctcc tagatctatt ctaggtagca
      781 acagcgactg tgcgtgtgat agagcaatct ttaacataac agtttcaaac acttggggga
      841 acatacgtaa ttcgcttttc gcaatcgccg taatattccc aatagttact ctgggcataa
      901 ttttgggtac ttcgtaccgc aaaagacaaa aatataatca atctaagaaa tctcagaacc
      961 gtgaggtcat aaagtatggg attatgttgc tggctattgc cggcggcctg gtgcatctcg
     1021 caatctttcc tgagcatggt tcacaacaaa tctactattc tgtgttccta cttactgctg
     1081 cctgtgtaca ggttgcatat ggaatactat acatacttgt taaccttgca ggagacaccg
     1141 aatctcggta tgacagacat tctcttattg ctaaatatag aaaaacatta tttgtaaatc
     1201 ttttcggtct gattgggaca ggagttctag tagggcttta catctacgtg gtactattcc
     1261 ctccacccct ttctcctact aatacgccag aaatcgtaga catagctgga attctagcta
     1321 aaacagtcga attacttttg atagggggaa ttttgtccct tatgatttgg gagaagagaa
     1381 aattacacaa tctaataata cgattgaatt aatgagacat gcgactttcc agagctaagt
     1441 ctaaggatat attttcaaaa ataatttcaa tctcttgtaa tggggataat gataggatgg
     1501 atactactga taatatatct caggtggtaa cggaaagtga attagatagt gacattctaa
     1561 taatatttgt atttggctct acatctgcga ttgaaactac agaacctagg aggggtttaa
     1621 aaattgaaat tccatttatg gtgtcaaggt tgattcccct aaatacgata tacaagtacg
     1681 atattaccta gcatgtcaca cacacttgag ctcatcattg cgcggtccaa atttcaacga
     1741 tccaattcgt ggacaggaag ctggccttat gaacaatggc aacgagtagt tcttttggaa
     1801 tttgatgtta gatctaggca gaggaaggtc gtaatccaag tgatgggtga atagttcaat
     1861 cctgacttta gtaggaagat ggcctattca attcatcaag tgcaagacca acttttcttg
     1921 agatctcatg cgttggacat aattcgaaac tgggtatttc attagatttc caattattgt
     1981 ttcgtggttt tgaagaggag tgctatttgt tacaaattga tgagtatgtt aaatttcatg
     2041 tgattctacc aaatgctcac aaagaggatt ttctcaaaat atgcaaaata ttgtcgataa
     2101 tttcgaggtg aggggcttgc ttggacatgg aaaccagaag aatattatcg ccaaaaggga
     2161 aagtcgccaa tttaagcttc tctctctctg acacagtata caatactttt ccaaatgttg
     2221 gatcaaaatc ctgacgaacc gcattgttaa acgcatatcc taaatatagc tttatagact
     2281 cttcttcatt ttccaatgat tcaatccctt ccttcatacc acctgcaatt aggcccccca
     2341 ttctatcaat tactcctgcg aatcttattt ctccacttaa attaaggaat tgcagacaca
     2401 ggtcatccgt atttgtctgt ggcatttgaa ctgtataatt tctattcctg gggtttttta
     2461 aatttgcgat gcattattga aattgagtag ataaaggata cgttgggacc cagacgattg
     2521 tgacaccgct tatttgcttg gtatcacttt ataatgtcaa taagaatgat tttctcctgt
     2581 cttcgtttta tgaatcaaag tgtggacttt ctatattgga tgtcaaatga tgtaagtctg
     2641 gaagaaacgg gcggagggaa cacaccggaa tgagaaattt gggaggtgca ttgataagtt
     2701 gcaatatgca cagttgatta ggcctgtttt tataaatcta aacaaatagt actatttgca
     2761 tctaagaatt cataaatgct tttaagcatc tagttcatta tacaatttcg aaaatggctg
     2821 acgaactgat cgcatacgca attaccgcag gttgtttcat agggtggggt atcatttgtg
     2881 gggcagcgag agcacggaga ataagttcaa accctctcat tggtgtttcc ggagaaaaaa
     2941 aagtaaaata ttcatctgat ggaaaaccaa taggtgactg aaatatagtg tgatattgtt
     3001 atcgccctct ttacattttt attttgtaag ttgttcggtc tcgggctctt tcgatattac
     3061 ttagaccatc agataattga aaacaacgag agattgaatt tcttcgggta attcttattt
     3121 ccttcaaatc attatttaat agttaatgcc ggacaggagg agcatatggt gacgccatag
     3181 gcaacgctgc caagcatcat tttctttggt gttgagagcc ctgcattacc caaaataata
     3241 gtattagcat aatccttcat tgcatactcg acgatacctg ttacgataga tgccggagta
     3301 acaatgactt cagatttgat gactatacac tgactttcgg tttctttcta atattagtga
     3361 aaatactttc gaattcagct cttatcatct gggatagagt aaatggagct gggcatctga
     3421 tcaacaccct ttcttgaagc aaaataaaat tgacttgaaa aacaatgcct gaattatttc
     3481 cttaccgata gcgtacgatg gcacaattaa ttgcattaat ggaagttgtg acccatcaat
     3541 agctaagaga attgtgaaag aggcgtagtt aacttgaaca tgtcgtaata agggcacaga
     3601 acataattaa attattcaag tgaaaaaacc gacggtactt tgacacatca cttgcatact
     3661 agttaaaaaa tacttttgcc atttgctgat cgtactattt tgactctgtg catgactctt
     3721 atcaatacta ttgacgtagg acttatattt tggttatcgg ttgtgttgct atggcaaagg
     3781 gcgccaaaag aggcggaaga gtcagggata agtggcgaga taaacaatgg ttaatagtaa
     3841 atgcccctca tgcctttgga ggtaaccatc ttaattatat tccaataact aatcccgaaa
     3901 ctgcaaaggg acgagtaatt gaaaatacca tgtatgatat actcaagcag gacccgaacc
     3961 aacatcagat aaaagtcttt atggaaatag acaagataga acaaggaata gcgacgacat
     4021 tattcaaagg gcatgaatac gccaaggaat ttcttaggag tttggtaaga cgtggaagtt
     4081 caatggtaaa ctacgttgaa gattatacta catcagatgg gtatacattc agggtggcaa
     4141 ctgtggcgtt cagtcagaga agattaaatt cttcaaagaa gcaccagtta agaataatat
     4201 cgcatcaact cttgtctgag caaatgccca aattaacggt tgaacaattt atcgaagatg
     4261 ttacgaaagg aaaattgagt atggatcttc tcgcggcttg caagaaagta gcttccttac
     4321 gtcatgtagg aatcaagaag agcaaattga tatctacacc tgaatcccgt gcaatgcagg
     4381 gcacaaaatt gttcaaagat aacattgttg ataaggaaga gaatatacaa gaaaccccat
     4441 cttgaccttt tgaagcatga ataatgatgc gcgagatccc attgagttag ggggggccac
     4501 tattagcgtc gtcattcatg ccaccgaaga taaagacaaa gtgatatcta aaattgtcaa
     4561 agtactctct cttaattccg ctaggtttca ggaatttaat actaaaggtc attgggggaa
     4621 tcatatcgtt ctgttgaacc ttagcttggg acagacactt gccggcaaga tattaaagac
     4681 aatatatact tcattgggtg ataataaaaa gaccgccttc ttaagctcgc tagagcagtc
     4741 aatcgacgag aaatataatt tgtatgtccg gatagataaa cag
//
LOCUS       DASSIK010000081         3219 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_809164, whole genome shotgun sequence.
ACCESSION   DASSIK010000081 DASSIK010000000
VERSION     DASSIK010000081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3219)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3219)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3219
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_809164"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(101..592)
                     /locus_tag="VFI64_01560"
     CDS             complement(101..592)
                     /locus_tag="VFI64_01560"
                     /inference="COORDINATES: protein motif:HMM:NF018663.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HET7242004.1"
                     /translation="MQKISPCLWFDDQGEEAAKFYTSIFKDSKIGDVTRYGKEGYEIH
                     GREEGTVMTVEFEIEGQKFLALNGGPIFKFNEAISFQVYCETQEEVDYYWEKLSEGGD
                     EKAQQCGWLKDKYGVSWQIVPTILMKMLKDKDSEKSQRVMKAMLQMHKLDISTLKKAY
                     EEK"
     gene            complement(743..1693)
                     /locus_tag="VFI64_01565"
     CDS             complement(743..1693)
                     /locus_tag="VFI64_01565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242005.1"
                     /translation="MSNLKSGIPFSNPLFVLIMLLASVIVVAFVGPHLVAGQLTANSN
                     NSSGMSQKIGVKITFPKPNQTVPTGELTIHGTSSDGSETNCQVYADWNDAKPMQNVTG
                     TGPGGPNDYSNWTFTYTQNYHLVSEGTNELTSKISCYGNSGVSNMTSKFYSINVTGST
                     NPISTNIPTTSDTGSSNFTTGFQSNGHSAILPQYSNVGANNSQHVIDKIANETINYDY
                     SIDGDKYKSLSITTANTNAVGSMDNNKGASDNIKTKKIQSNNMESVVSLKVDDSKKKP
                     NNFKFKLHYGNGNINSVDLHKYIHNLIKEKLDKVSERLLD"
     gene            1819..2361
                     /locus_tag="VFI64_01570"
     CDS             1819..2361
                     /locus_tag="VFI64_01570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242006.1"
                     /translation="MKIQSSKLGVVSLSITISIALLLTTIPNAANASKNSDFRLSQSL
                     KQHSVCAEDSVCSNSGLNVAEMVKGLKQKIYTKVNQQLRQHNLCVDSECLNEGYNQLS
                     IDNLKGKLSGKFNQKIEQSNECVNSQCVNEGGNEITVNGNGKVDSQQTIVQSNQCADG
                     ATCINSAGNVYVIGNLKKTG"
     gene            2710..>3219
                     /locus_tag="VFI64_01575"
     CDS             2710..>3219
                     /locus_tag="VFI64_01575"
                     /inference="COORDINATES: protein motif:HMM:NF019846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HET7242007.1"
                     /translation="MSEGFIDNFSCHSKEYSFSRPTYPDLLFELLSAVTPQKNLAWDC
                     ATGNGQAAIGLCKYFKNVIASDASKNQIQHGFQRENIDYKIFPAENANLDNDSVDLVT
                     VAQALHWFDFEKFYINVKRVGKKDGIIAVWSYDMHKINPQIDNISSQLNVDGEILGNY
                     WAKETKYVKE"
BASE COUNT         1027 a          592 c          578 g         1022 t
ORIGIN      
        1 caacattcaa cattcaacat tcaacattca acattcaaca ttcaacattc aacattcaac
       61 attcaacatt caacatccac cgacgtttgc aaagttgtaa ttatttttcc tcatacgctt
      121 tctttaaggt gctaatgtcg agcttgtgca tttgaagcat tgccttcatg actctttgcg
      181 atttctcaga gtccttgtcc ttcagcatct tcatcaaaat ggtgggaacg atttgccacg
      241 agactccgta tttatccttg agccaaccac attgctgcgc cttttcatcg ccaccttcgg
      301 aaagtttttc ccaataataa tccacttctt cttgcgtctc gcaatacacc tggaaagaaa
      361 tggcttcgtt gaatttgaat atcggaccgc cattgagggc taaaaatttt tgcccttcga
      421 tttcaaattc tactgtcatt actgttccct cctcccttcc atgaatctcg tagccttctt
      481 ttccatagcg ggtaacgtct ccaatctttg agtctttaaa aatagaggta taaaactttg
      541 ctgcctcctc accttgatca tcgaaccaca aacaaggact gatcttttgc atattgtctt
      601 attaaagaaa taactattta aacaatcatc aagatttgag cgagcctttc gataaaagtg
      661 ctctaccaac tataaatgta aaattgatac gcattcaaag ttactaaatc aggatatcca
      721 aattgtaatt cgtcatcata aattagtcta ataatctttc agatacttta tctaactttt
      781 ctttaatcaa attatggata tatttgtgca aatctacaga attgatgttc ccatttccat
      841 agtgcaattt aaatttgaaa ttatttggtt ttttcttgct gtcgtcaact tttagagaca
      901 ccacggattc catattatta gattgaattt ttttggtttt tatgttgtca ctagctcctt
      961 tattgttatc catgctgcca acagcgttgg tgttggccgt tgtgattgat agggatttgt
     1021 acttatcacc atcaatagaa tagtcataat tgattgtttc atttgcaatt ttatcgatga
     1081 catgttgaga gttattcgca cccacatttg agtactgagg cagtattgca gaatgcccat
     1141 tactctggaa tcctgtcgta aaattagagc tgccagtatc agatgtagtg ggaatattag
     1201 tgctgattgg attagttgag cccgtaacat taatactgta aaacttgctt gtcatattgc
     1261 taactccaga gttaccatag caagaaatct tggaggttaa ttcattggtt ccttccgata
     1321 cgagatgata attttgggta tatgtaaatg tccagtttga atagtcgttt ggacctcctg
     1381 gtcccgtccc agttacattt tgcattggct tagcgtcatt ccaatctgcg tagacctgac
     1441 aattcgtttc tgatccatcg gaagaagttc catggattgt aagctcgccc gttggaactg
     1501 tctgattcgg ttttggaaaa gttattttta cacctatctt ctgcgacatg ccagagctat
     1561 tgttgctatt ggcagtcaat tgaccggcta caagatgagg tccaacaaat gctacaacta
     1621 ttacagatgc taaaagcatg attaaaacaa atagtggatt tgagaatgga attcctgact
     1681 ttagattact cacaaaaaaa gatttgatac ttgccttata acaagttctt aagcaaacta
     1741 taaacgatga atctataatc gggctctaga cggcgagtcc tcaaggctca tataatttca
     1801 gagaaaaatg gtttactgat gaaaatccaa tcatctaaac taggagttgt atcgctatca
     1861 ataacaatat caatagctct tctgcttacg accataccca atgcagcaaa tgcatctaaa
     1921 aattcagatt ttaggttgag ccaaagccta aagcaacata gtgtatgtgc tgaagattcg
     1981 gtttgtagta actcggggct aaacgtcgcc gaaatggtta aaggtctcaa acagaaaata
     2041 tataccaaag taaatcaaca gctaaggcag cataatctgt gcgtcgattc agagtgtctt
     2101 aatgaaggat ataatcaatt atccatagac aacttgaaag gaaagctttc tggaaagttc
     2161 aatcagaaaa ttgagcagag taacgaatgt gtaaactcgc agtgtgttaa cgaaggaggc
     2221 aacgagatta ctgtaaatgg taatggtaaa gttgactcac aacaaacaat agttcagagc
     2281 aatcaatgtg cagatggggc gacatgcatt aactctgccg ggaacgtata cgtaataggc
     2341 aatctaaaga aaactggatg aggcaaggga aaagaattaa gaaatggaat atgaatccga
     2401 gacagtaaaa ggaggaaata catctggcct aggttgcatt tttacacgat ttttctccac
     2461 cgtattttga tggttacgat aaagtttcca ttcatgtcaa attcctcaat tctggtttcc
     2521 aatattcgta acaacctgca atttgtctta atctattgct atactattag catgattgaa
     2581 ctgaccattg ccactgtcag ctggtcccca tttttgtggc tatacttaag gtatgtaagt
     2641 taactgggcc attttttaaa ataatataac aaaataaaga ataaaaactg ggaaaactaa
     2701 ataattccat tgtccgaagg atttattgat aatttttctt gtcattcaaa agaatattct
     2761 ttctcaagac caacttatcc tgatttactt tttgaattat tatctgcagt tacacctcaa
     2821 aaaaatcttg cttgggattg tgcaacaggc aatggacagg ctgcgatagg gttatgcaaa
     2881 tattttaaga atgtaatcgc aagtgatgca agtaaaaatc agattcaaca tggttttcaa
     2941 agagaaaaca tagattacaa aatatttcca gctgaaaatg cgaatttgga caacgattct
     3001 gtcgaccttg tgactgtagc tcaagcatta cattggtttg attttgaaaa attttacatt
     3061 aatgtaaaaa gagttggtaa aaaagatgga attatagcgg tgtggagtta tgatatgcac
     3121 aaaataaatc ctcaaataga caacattagc agtcagctta atgtagacgg tgaaattctt
     3181 ggtaattatt gggccaaaga aacaaaatat gttaaagaa
//
LOCUS       DASSIK010000082         2565 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1098263, whole genome shotgun sequence.
ACCESSION   DASSIK010000082 DASSIK010000000
VERSION     DASSIK010000082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2565
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1098263"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..566)
                     /locus_tag="VFI64_01580"
     CDS             complement(<1..566)
                     /locus_tag="VFI64_01580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242008.1"
                     /translation="MYQEIVPIIAEDVFAILGDSQSAEILDAASVGLQSSSNGIGNQT
                     KKQYYVRLKRLVDIGLIEKRQSIYKLTSFGSIVYENHLKTMNKIMPNYWQIKSFDILK
                     SRNDFPVEQKEKIFNDYIETTGLKGVINTTQLSSFSIANRFDDLIVEVLKVLDNAEKE
                     VYFATRYHDPHISTKVFEKIGKGVTIHIL"
     gene            complement(936..1619)
                     /locus_tag="VFI64_01585"
     CDS             complement(936..1619)
                     /locus_tag="VFI64_01585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242009.1"
                     /translation="MSRSICEFMISFIFIFSILGLPEFQRPANAQFILSIVYNADAGG
                     GNATIPLNVYRPDEIITNQSANIKWQNPTLGIQYPHTVTFIRADTNLTIPKISFNLSN
                     YSSLIDSKFQNAQNDKASAVDVNAEILPTVISANGSITYLDPYGNLGGDGAQYNFTGT
                     EKYVNSGFIWPEGHVPKGFANITSFTVQFEKQGVYHFQCLIHPEMSGNVTVTPPNTPM
                     GISISDFGK"
     gene            complement(1677..2138)
                     /locus_tag="VFI64_01590"
     CDS             complement(1677..2138)
                     /locus_tag="VFI64_01590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242010.1"
                     /translation="MSGLDITPAMSATNNMSSTIPSVKMIYANHSYDMLPFVVLNDEG
                     VNKLNFPHLPDQYKPVVVMASDKNFTFQFSKTPREINAFGIDYEADTTEVTPLTKTGK
                     NQFTFGNVHGILTLEVRSIYDDGSYVTYTCLVDIKNTAAGGNQAKGLDIFA"
BASE COUNT          797 a          447 c          473 g          848 t
ORIGIN      
        1 agtatgtgga ttgtaacacc tttaccaatt ttttcaaata ccttagttga gatatgtgga
       61 tcatgatatc ttgttgcgaa gtaaacttcc ttttcggcat tgtccaatac tttcaagact
      121 tcaacaatga ggtcatcaaa ccggtttgcg atactaaaac ttgaaagttg tgttgtatta
      181 atgacaccct tcagcccggt agtttcaatg tagtcattga aaattttctc cttttgttca
      241 acaggaaaat catttctact ttttaaaata tcaaagctct taatctgcca gtaattaggc
      301 atgatcttgt tcatcgtctt caaatgattc tcgtatacaa ttgatccaaa tgatgttaat
      361 ttgtaaatag attgacgctt ttcgattaat ccaatatcca caagacgttt taatcttacg
      421 taatactgct tcttagtttg attaccaatg ccattagaag atgactgtaa tcctacagat
      481 gcagcatcaa ggatctctgc tgactggcta tctcccaata tagcgaatac atcctcagct
      541 attattggaa caatctcttg gtacaaaata atcctatatt cttatgtatc catgaggcat
      601 attataggtt tcggcgaatt gtctcttttc ttctaattta ggacaaaatt cagagcattt
      661 ttctcgattt cgcgagcatt tttaaatctg gaatcagtgt aactaatgaa ctagaatgaa
      721 tgttgaagac aaggaagggc actcggtacg agttatctca taaataactg tcttgtaata
      781 attttataac acttgtcata catagtgatt tttgcacatt ccctcgtcat gtcttgagtt
      841 attcatatta tttacattat aaaaccccaa aaatcagcaa ataaaggaac acgccgccaa
      901 gcataaacta gagcttgatt ctaatatttc aacaattatt ttccaaaatc acttattgat
      961 atacccattg gtgtattagg aggggtaact gtcacgttgc cactcatttc aggatggatg
     1021 aggcattgga agtgatagac tccttgtttc tcgaattgaa cagtaaatga agttatgttt
     1081 gcaaagccct tcggtacatg cccttcaggc catatgaagc cggagtttac atatttttct
     1141 gtaccggtga aattatattg tgcaccatct cctccgagat tgccataagg atctagataa
     1201 gttatcgaac catttgcaga aattacagta ggaagaattt cagcattaac atcaactgca
     1261 gatgctttgt cattttgtgc attctgaaat ttagagtcaa tgaggctaga gtagtttgac
     1321 aagttgaaac taatttttgg aatagttaga ttagtatcag cacggatgaa agtaactgta
     1381 tgtggatatt gaatgcctaa tgtaggattt tgccatttta tattggcact ttggtttgtt
     1441 ataatctcat cgggacgata aacattaagt ggaattgtgg cattaccacc gcctgcgtca
     1501 gcgttataca ctatactgag tatgaattgt gcattggcag gtctctgaaa ctctggcagt
     1561 cctagtatag aaaaaatgaa aataaatgag atcataaatt cgcatataga tcgactcatt
     1621 aaatgagaaa ttcgacattc gctatttaat gtttagtttc ctaaaggatt tgatacttaa
     1681 gcgaatatgt cgagcccctt cgcttggttt ccgcctgcag ctgtattctt tatgtctaca
     1741 aggcatgtat aagtgacgta actaccgtca tcatagattg atctgacctc aagagtgagt
     1801 attccatgca catttccaaa ggtaaattga ttcttgccag tcttagtcaa aggtgttact
     1861 tctgttgtat cagcttcata gtcaatacca aatgcattga tctccctagg ggttttagaa
     1921 aactgaaaag tgaaattttt atctgaggcc ataacaacta caggtttata ctgatctggc
     1981 aagtggggga agttcagctt gtttacccct tcatcattta gaactacaaa tggaagcatg
     2041 tcgtagctat gatttgcata tatcattttt acagatggaa ttgtggaact catattattt
     2101 gtcgcagaca ttgcaggggt tatatcgagt cctgacatgt ataatatgag agtagttaaa
     2161 gtcaatagag gcaggaggat tatgagagaa gtaaagtctc tgcaaactaa cattgagttg
     2221 tttgtgtatt aaaatatgaa aagtgtcaat gtcaacagat attcacaata ataaagaaaa
     2281 aaataattcc agatttgttc aattgctact ggcgtaaatt ggacaataaa aagaagctct
     2341 tcccctgtca accccccttc caacccttaa aatagttgca atctattgct tcgttatagg
     2401 aactgatgtg gctttggtgt gatcatggct tctaattcat ttttgattgg agatcaatgg
     2461 ggagtaacat aagtttcgtc aactcgacaa ttgcttataa agtgctagca agaccagtta
     2521 agagttaaaa gtatttgaca atcctcacta tctgaaaaaa ggatt
//
LOCUS       DASSIK010000083         2265 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1306012, whole genome shotgun sequence.
ACCESSION   DASSIK010000083 DASSIK010000000
VERSION     DASSIK010000083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2265)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2265)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2265
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1306012"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1455)
                     /locus_tag="VFI64_01595"
     CDS             complement(<1..1455)
                     /locus_tag="VFI64_01595"
                     /inference="COORDINATES: protein motif:HMM:NF024299.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HET7242011.1"
                     /translation="MTGSNQAVSGKLFFVLISSLTLVPLFFGSVQSADSPAKGDMVGS
                     ITGNITANSSAFVAKPELVQDDDSSSAYQKGKYFYEKGDYEQALKWFELALSSDQGDF
                     NSLVGKADSLYRLGRYEDASVSYENALKIDPEDFDSWMGKGSSLYNLGMYTESLPAFE
                     KAIEIKPENSYAWYDRGNAFYRLGDYELAVHDFAKGESLNFTNLDVKDNKELALDKLV
                     ESVLGKDLNSTQGALLLREKADKLFDQQKYEGALTIYEKVLEMDPENISLLIRKGNTE
                     YAIGGYEDALASYQKAEGLSPDDPIVWYDKALALHKMGRNNESLVAVERSLEINSSDS
                     SAWYNRGVILEDIGKQDVALASYDKALEINPTHLSALINKGYLLNSLGRYEESLDFFE
                     QAIGIDLSDPVTFNGQGSSLFSLGRYAEALSSYIEATELDSANTAAWNGVGASYEKLG
                     IYGDALKAYQRVLEIDPENSYAADSISSIKNIVTS"
     gene            1837..>2265
                     /locus_tag="VFI64_01600"
     CDS             1837..>2265
                     /locus_tag="VFI64_01600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242012.1"
                     /translation="MEEYRTRMAFFLILSFSIVLLASQGTSSNYLNKSWADESQNKSD
                     SGNDQETSTIPNQDSQDNKQTANNSTDEVLSGNQISEDNNQTTTEVTGENESNQTTNQ
                     TIETQNQTQNNQTVNIQNNIQMKQRMEISISEEEGQAPIPL"
BASE COUNT          713 a          483 c          429 g          640 t
ORIGIN      
        1 ggaggtaaca atatttttaa tcgaagatat actgtcagct gcatatgaat tctcaggatc
       61 gatttccaaa accctctggt aggctttcag tgcatctcca tatatcccta atttttcata
      121 cgatgcgccc acgccattcc aggcggctgt atttgcggaa tccaactccg ttgcttcaat
      181 gtaggacgaa agtgcctcag catacctgcc aagactaaat aggcttgagc cctgtccatt
      241 aaaggtgact ggatcagata agtcaatgcc tatggcctgt tcaaaaaaat cgagtgattc
      301 ctcgtatcgt ccaaggctat taaggagata acctttgttg atgagagctg acaaatgtgt
      361 tggattgatc tccaatgcct tgtcataaga ggccagggcc acatcctgtt tcccgatatc
      421 ctcaagtatc acacctctat tgtaccaagc tgaagaatca cttgaattaa tctcaaggga
      481 tctctccacg gcaactaggg attcgttgtt tctgcccatt ttatgaaggg cgagagcctt
      541 atcataccat actattgggt catcggggct taatccctcg gctttttgat atgatgcgag
      601 agcatcttca tacccaccaa ttgcgtattc agtattaccc ttccgaatca aaagtgatat
      661 gttttctggg tccatttcta ggaccttttc atagatggtt aacgccccct catacttttg
      721 ctgatcaaat agtttatcgg ccttctctcg caataataaa gcaccttgcg tggaattcaa
      781 atcctttcca agaacagatt ccacaagttt atcaagggcc aattctttgt tgtctttcac
      841 atctaggtta gtaaagttta gggactcacc ctttgcaaaa tcatgaactg ccagttcgta
      901 atccccaaga cggtaaaacg cattccccct atcataccag gcgtatgaat tctctggttt
      961 gatttctatt gctttttcaa aggcaggtaa cgactcagta tacatgccaa ggttataaag
     1021 agaagatccc ttccccatcc acgaatcaaa atcctcggga tctattttca atgcgttctc
     1081 gtaagataca gacgcatcct cataacggcc gagcctgtac aaactgtcgg ccttgcccac
     1141 caacgaatta aaatctcctt gatctgaact taaggctaat tcaaaccatt tgagagcttg
     1201 ttcatagtcc cccttttcat aaaaatattt tcccttttgg taagccgatg agctatcatc
     1261 atcctgaact agttctggtt tggcgacaaa tgcagagctg ttggcggtga tattgccagt
     1321 aatcgaaccc accatatctc ccttagctgg ggaatcggct gattgtactg aaccaaaaaa
     1381 caacggaact aaagttaaag aagaaatcaa aacaaaaaaa agtttacctg aaaccgcctg
     1441 gttacttcct gtcaatgcgt ttctgagtct tttttgttat ttaaggataa ttggaaaaaa
     1501 agagccggaa tacacaagag aggagaaagt tgaaatgtag ttgaaactag tattggaatc
     1561 acaactatta tcgcgattca tgatgcaatg atttacaaat ttgaatttgc gggtcatttt
     1621 tccactttta gtaagccagg ggtaaaagag attggcgaac acataatcaa atctataaac
     1681 tggactcaga caaggtggac atttcatttc attcggaatt agagtatgtg taaaataaag
     1741 cgggtactga aggaccatac tgactaaaga ccagcaactc ctgcgaggga ttctacttta
     1801 taacctttgt tggtttattg taaattggtg gatttaatgg aagaatatag aaccagaatg
     1861 gcattttttt tgatattaag tttttctatc gtcttgttag catcgcaagg gacctcaagt
     1921 aattatttga acaaatcatg ggccgatgag tctcaaaaca aatccgactc tggcaatgat
     1981 caagagacat caaccatacc taatcaagat tctcaagaca ataaacaaac ggcgaataat
     2041 tcgactgatg aagtcttgag tggtaatcag atttctgaag acaataatca aactacaact
     2101 gaggtaaccg gtgaaaacga atcgaatcaa actactaacc aaactataga aactcaaaac
     2161 caaacccaga ataatcagac agtaaacatc cagaataaca tacagatgaa acagagaatg
     2221 gaaatcagta tctcagaaga agaaggacaa gcacctattc cttta
//
LOCUS       DASSIK010000084         2892 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1306267, whole genome shotgun sequence.
ACCESSION   DASSIK010000084 DASSIK010000000
VERSION     DASSIK010000084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2892)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2892)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2892
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1306267"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..422
                     /locus_tag="VFI64_01605"
     CDS             <1..422
                     /locus_tag="VFI64_01605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242013.1"
                     /translation="KRIFLVENYPKKIDHLPGNLAEVHHRTRDIIFCDKTLSTVQISK
                     VITRYLRYIDELYQLVENNIDLTKVDKTQLERIRRKYKKYKQDTGAEIKGVYYISRDE
                     PVHSIYENADFSPKAIKDSIKEGEQKTIRMLDEIAKK"
     gene            1012..1173
                     /locus_tag="VFI64_01610"
     CDS             1012..1173
                     /locus_tag="VFI64_01610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242014.1"
                     /translation="MTGSRTIVICPSCGNNEMQLMAISNYESYGLDNDYINEMAAKLW
                     TNRGGGNIR"
     gene            1170..1421
                     /locus_tag="VFI64_01615"
     CDS             1170..1421
                     /locus_tag="VFI64_01615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242015.1"
                     /translation="MNIAYAEEEYDIVAKTCGCKDKTRKVTYSFVNSYHSLCRDKKDI
                     LISEIQACERLLKYTREENDKIILENEIAELKLALDLLQ"
     gene            1729..2370
                     /locus_tag="VFI64_01620"
     CDS             1729..2370
                     /locus_tag="VFI64_01620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4443 domain-containing protein"
                     /protein_id="HET7242016.1"
                     /translation="MHTYVKTLRKVADRYAPSRVLSFDMVHVFKTLQLIQENGHVSRE
                     KLCKDLGLGEGTIKTLVRHLKMQNLIESTNAGTTMTKKGNSFFSELLSSIPSEISLSK
                     CAITLGKFNYAVLVKQMSSMIKDGIAQRDAAIRMGASGATTLLFKDNKFLIPQTEFDS
                     LKDEHQLSEQMIKNLHPQDGDVIIIGSDNYSRMKAEFAAKSAALITIMNHEKH"
BASE COUNT         1018 a          474 c          568 g          832 t
ORIGIN      
        1 ataagcgcat atttttggtg gaaaattatc caaaaaagat tgatcacctg cctgggaact
       61 tggctgaggt tcatcacaga actagagaca ttatcttttg tgacaagact ctgagtacgg
      121 tccaaatatc taaagtgatt actcgatatc tccgttatat tgatgaacta tatcaactgg
      181 ttgaaaataa tattgacttg actaaggtcg ataagacaca acttgaaagg attcgcagaa
      241 agtataaaaa atataaacag gatacggggg cggaaataaa aggtgtgtat tacatttctc
      301 gggatgaacc cgttcattct atttatgaga acgcagactt ttcaccaaag gctatcaaag
      361 attcaattaa agaaggagag caaaagacaa ttagaatgct tgacgaaata gcgaaaaaat
      421 aggtagggaa ttgaaactga tcgcttgtta acgatgggca gagcttgcat ccagttcaac
      481 tacgcctgct catgcagtgt tggtagcagt atttgattat taggtctcca taatggcata
      541 agttgcggca aaaacgaaaa tgtgttcata tcaaaaaata atcaaatctt acaacttcta
      601 aatggaaact tttattaggt tttttcacaa ttcattgaaa agtgtttccc atctcagact
      661 tctgatcata gttgcctttt ctatttactc gaccattaaa ggtgcaatat ttggtcattt
      721 taacctacat cttgcaaaaa tcacagcaga tttgtgtgaa aggaggtaac gtatgtcaca
      781 taacataatg caggtgtctt gcgactgtgt cgaatagtag ggaaacttaa gtagcattac
      841 tttcaataga atcaacgtta attagatacc atcgtaggga aaacctataa gaagatggtc
      901 taccgttata agcatctcta aaatagaagc actaatcacg agaatgaaaa catgcttatc
      961 gagaagaaaa actttctggt atgcgagtcg tgtttttggt gtgtttcgtg cttgacagga
     1021 agtagaacta tcgtgatctg tccttcatgt ggtaataatg aaatgcaatt gatggctatt
     1081 tcaaactatg aatcttacgg attggacaat gattatatca atgaaatggc cgcaaaattg
     1141 tggacaaatc gaggtggtgg taatataagg tgaatatcgc atatgcagag gaagaatatg
     1201 acattgtagc caaaacatgt ggatgtaaag ataaaacgag aaaggtaaca tactcgttcg
     1261 ttaattcata tcacagtctt tgtagggata aaaaggacat attaatctca gaaatacaag
     1321 cctgtgaaag attgttgaaa tatacaagag aggaaaatga caagatcatt cttgaaaatg
     1381 aaatagcaga actaaagtta gcattagatc tattgcagta gaaccagaat ggaaataaaa
     1441 aatagtaaac ttgactggga caaacgaata attcctcaca cacttttcca atatgaatgt
     1501 cagttaaatt ttgactaact tattaacaat tggttctaag tcttcaaccc ttagtcgtta
     1561 ggtattcaag aaactggagg ttcgcacttg atggtcaata cgtctgttct atcaaagtgc
     1621 taatgcatat gctgtgaaac cggaaatagc taattatcca accaaaagac ggccatagag
     1681 gagtcctaaa aatacacata aatctgtagt acgcgtagat ttttagtgat gcacacatat
     1741 gttaaaacac ttcgtaaggt tgcggacaga tacgcaccaa gtagggtgct atcctttgac
     1801 atggtgcatg tgttcaagac attgcagcta attcaagaga atggacatgt tagcagagag
     1861 aaactatgta aggacttggg actaggagaa ggaactatta agacattagt gagacacctc
     1921 aagatgcaga accttataga atctactaat gcaggcacga caatgactaa aaagggaaac
     1981 tcattttttt cagaactgtt atcttcaatc ccatctgaaa tcagtctatc caaatgtgct
     2041 attacgttgg ggaaattcaa ctatgcagta cttgtaaaac aaatgagttc tatgatcaaa
     2101 gacggaatag cacaaagaga cgctgcaatt agaatgggag catctggtgc aactaccctt
     2161 ttgttcaaag acaacaaatt tcttattcca caaacagaat ttgattcatt aaaagatgaa
     2221 catcagttat ctgaacagat gattaaaaat cttcatcccc aagatggaga tgtgataata
     2281 ataggaagtg ataattattc aagaatgaaa gccgagtttg ctgcaaagag tgctgctttg
     2341 ataaccatta tgaatcatga aaagcactaa tcactaaaaa atctacatca ttagcaaact
     2401 tggctgcaat aaatgaaaat gatagatgat aaaggtttgc ttgactcacc aatactagat
     2461 ttatttacag atcttgactt gatttatcta tgaaaaacta ttgtgctcct gtagtgaaga
     2521 atccagaaat tagcttagca caattttcgt taacttacgt atctctttag aaaggagagt
     2581 gtcttctctc atgcatcttg tgtttctttt ggagcataat tgtagccgga aggattggca
     2641 aaagcgtgtc ctattccaga ataaatatga atttcatttg taactccaat atcgtctaac
     2701 gcagccttga actgatttat atgtttgaga ggaatagcct gatctttgtc accaaaaatc
     2761 ccgagtacag gccattttat cttggacagc tcaaggcagt tacatttcta ataggttttt
     2821 cggaactatt caactgcccg tgaactaaat tcgtattgct aggaaagatg atcatcgaac
     2881 tgagaacgaa ga
//
LOCUS       DASSIK010000085         5541 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_609367, whole genome shotgun sequence.
ACCESSION   DASSIK010000085 DASSIK010000000
VERSION     DASSIK010000085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5541)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5541)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5541
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_609367"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..207
                     /locus_tag="VFI64_01625"
     CDS             <1..207
                     /locus_tag="VFI64_01625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242017.1"
                     /translation="AWINEERYHVLDGWVKENLPEMFANVLRARTQEDRAQARAILLE
                     KMNSLYERDLKDHLYAVARSTKIL"
     gene            256..564
                     /gene="rpl12p"
                     /locus_tag="VFI64_01630"
     CDS             256..564
                     /gene="rpl12p"
                     /locus_tag="VFI64_01630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein P1"
                     /protein_id="HET7242018.1"
                     /translation="MEYVFAALLLHKLNKDITEDNVVNVIKATGVTPDQVKVKALVAA
                     LSEVNIDEALKAAPIAAPQPSGPVSGPAAAPTANKEEEEKKEEKKEEEALEGLSALFG
                     "
     gene            complement(715..1605)
                     /locus_tag="VFI64_01635"
     CDS             complement(715..1605)
                     /locus_tag="VFI64_01635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HET7242019.1"
                     /translation="MSVDGNKTNRTHYPRRKQNLYQQMQELPKSYSVIALSSMTKVRA
                     AQLMKIRKKFHNDIKIKIIKNRVVQKSFEKINGIVGLDQLSSKLEGQCALMFTNISPF
                     KLNLVFDQNKVYLAAKGGDVTKMDITIPSGNTGISPGPVLSEFKEVNVPTKIDQGTIW
                     VSKDTRVAKAGDVITQKTAALLSKLNIKPIEAGIAVNFAISDGLVFGENDLKIDLKAY
                     ANELIMSHCQALSLAVESAYTTLETIKLLLNKANGLAESLASTSGYISPSTVKLVLAR
                     TQSNASIIAEAIKKKGYIAS"
     gene            complement(1605..2279)
                     /locus_tag="VFI64_01640"
     CDS             complement(1605..2279)
                     /locus_tag="VFI64_01640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HET7242020.1"
                     /translation="MLNDNQLINLVKSARELSTKRKFTQSVELTMVLKDIDVKKGFAL
                     NEVVPLPNKPGRQASICIIASGDMGTRARKAEVDKVIEPEELNRLGTNKREARKIVRA
                     YDFFLADTSLMSSVGRSLGQFLGPKGKMPTPFPYGAPIETIAERFRGSVRVRTKNQLN
                     LSAKIGDEKMEDEQLVANAGVIMSTIEKKLPQGEKNIQNAIIKFTMGRPSKLSGIVKE
                     KKKGVQ"
     gene            2780..3370
                     /locus_tag="VFI64_01645"
     CDS             2780..3370
                     /locus_tag="VFI64_01645"
                     /inference="COORDINATES: protein motif:HMM:NF021246.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly(R)-hydroxyalkanoic acid synthase subunit
                     PhaE"
                     /protein_id="HET7242021.1"
                     /translation="MTNETNSKENHAESKPPLSVMGSDSAYDKWNEIIQLPSIGPIKA
                     FTKDYNEYCSELLLLTKTLIDLYGSLNGYWIQMSSAYTQALNNVGKKKLPKSDPWDSE
                     QFRMILIDAFEDAFTSLFTSKEFAKAYNEVSSNQIELVNCVHRIFEKNLETLRLPTRS
                     ELDVILEDINELKRNIRDMRKELESGTIHGRANNSV"
     gene            3345..4460
                     /gene="phaC"
                     /locus_tag="VFI64_01650"
     CDS             3345..4460
                     /gene="phaC"
                     /locus_tag="VFI64_01650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class III poly(R)-hydroxyalkanoic acid synthase
                     subunit PhaC"
                     /protein_id="HET7242022.1"
                     /translation="MEERTILSRETGTSEYEKVVKRSINDGPSVQEEVLRKLNKTREI
                     LSESEDIQVGTTPNEVLYETRLFRLLHYRPIVNKTARIPLLVVYALINKSYILDLQPN
                     KSWIRNLLSQGFDIYLLDWKSPVNADKYTSFDDYVNYFIDDSVDILRNRNSVDKITLH
                     GYCMGSSMSVMYTALHQDKIKNLVTIAPVLDTRKDTTVIANLARYMDIDKLVNSIGNL
                     PSQKLYECYSALKPFKQGVNKYYNLVQNIDNDSFVQNFMRIEKWLYDTPPIAGETARQ
                     WIKDVYQRNLLFNNELRLGSKTVNLSKINVPLLNIVAEEDHLVSAECSVPLNEAVSSD
                     DKRLMRFHTGHVGLIASSYSQNNVLPKVGQWLKSRSQ"
     gene            complement(4559..4867)
                     /locus_tag="VFI64_01655"
     CDS             complement(4559..4867)
                     /locus_tag="VFI64_01655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HET7242023.1"
                     /translation="MGSNHDIDDTMSSYKKAVEKGSEAQNEFLKQFSNLQQDAMHNFF
                     TMLQGLTFYNAMFKTTIQSGGRISIPEAERQALKIDDGDLVQVIIIPIERRKKSSDKS
                     "
     gene            complement(4889..>5541)
                     /locus_tag="VFI64_01660"
     CDS             complement(4889..>5541)
                     /locus_tag="VFI64_01660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HET7242024.1"
                     /translation="IIVPDIVGFGYSDKPTVEYSINFFVNFVSKFLSLTNVKRTHIIG
                     SSFGGLVAAEFALKFESVVNKLVLVSPAGSMKTSTKTLDEYILAALYPTNENARRAFF
                     DMAYDPQTVTEDTIKDFVNRMKLPNAKYAFMSTLLGIRNIEDLADRLKGIMSPTLLVW
                     GEEDRMIPPSYADEYRKIPNSKLTVIPNSGHTPFTETPRSFANIVLNFMGPFNNIK"
BASE COUNT         1665 a         1081 c         1055 g         1740 t
ORIGIN      
        1 gcctggatta atgaagaacg ctatcatgtt ctggatgggt gggtcaagga gaatcttccg
       61 gaaatgtttg cgaatgttct tagggctcgt acacaggagg acagagcaca ggcgagggcg
      121 atactattag aaaaaatgaa ttctctgtat gaacgagatt tgaaagacca tttgtatgct
      181 gtggctagga gcacaaaaat actgtgatat tttgaaagtt ttatattatg gtcttggata
      241 gaccattctt tgaccatgga atacgtattt gctgcattat tgttacataa attaaacaaa
      301 gacattacag aagataatgt tgttaacgtc ataaaggcta caggcgtgac cccggatcaa
      361 gtgaaagtta aggcactggt agctgcctta agtgaagtga atattgatga agcactgaaa
      421 gcagctccca ttgctgcacc ccaaccttca ggcccagttt ctggccccgc ggcagcacca
      481 actgcaaata aggaagagga agaaaagaaa gaagaaaaga aagaagaaga ggcactcgaa
      541 ggattatccg ccctattcgg gtaaccagct aaacgtcgtc aactctatta aaatatttgt
      601 tgctagtttt aatgtgactt tccatatcgt ctgtgctttc cgaatacatc tggacgacgc
      661 gtttccagac gtattctgca aaccataaat ttttatcttt aagattttcc tatcctaact
      721 ggctatgtaa cctttctttt tgattgcttc ggcaataata ctcgcattcg attgggttct
      781 agctaatact agtttcaccg tgctggggga gatgtaccct gatgtggatg ccaatgactc
      841 tgcaagtccg tttgccttgt tgagaagtag tttgatagtt tctaatgttg tatatgccga
      901 ttcaactgct aatgataatg cctgacagtg agacataatc aattcatttg cataagcttt
      961 taggtcaatc ttcagatcat tctctccaaa tactaagcca tctgagatgg caaaattaac
     1021 tgcaattcca gcttcgatag gtttaatatt taactttgag aggagagccg ctgtcttttg
     1081 tgttatgaca tcacctgcct tagcaactct ggtatctttg cttacccaaa ttgtaccttg
     1141 atctatctta gtaggtacat ttacttcttt gaattcggaa agtacaggac cgggtgatat
     1201 acctgtgtta cccgatggaa ttgtaatatc catcttagta acatcgcctc cttttgcagc
     1261 caagtaaacc ttattttgat caaaaactaa attcagctta aaagggctaa tgtttgtaaa
     1321 catcagcgca cactgacctt ctaatttact agacaattga tccaatccca cgataccgtt
     1381 gattttttcg aaagatttct ggactaccct attcttgatt atttttatct taatgtcatt
     1441 atgaaatttc tttcgtattt tcatcaactg cgctgcgcgg accttggtca tacttgaaag
     1501 agcaataacg ctataagatt tgggaagctc ctgcatttgc tgatacaaat tttgctttcg
     1561 tctagggtaa tgagttctat tggtcttatt tccatccact gacattactg tacacctttt
     1621 ttcttttctt taacgattcc cgataatttg ctcggtcttc ccatagtgaa cttgataatt
     1681 gcattctgta tattcttttc accttgagga agcttttttt cgattgtaga catgattact
     1741 ccagcatttg ccactaattg ttcatcctcc atcttttcat ctcctatttt tgcagatagg
     1801 tttagttgat tctttgtcct aacacgaaca gaacctctga atctttcagc aattgtttct
     1861 attggagcgc cgtatgggaa tggtgtaggc atcttgccct tgggacccaa aaactgacct
     1921 aaagaacgac caacgctcga cattaatgat gtatcagcta agaaaaaatc ataagccctg
     1981 acgattttcc tagcttccct cttattagtt cccagtctat tcaattcttc aggttctatc
     2041 actttgtcaa cctccgcttt acgtgctcga gtgcccatgt ctcctgatgc tatgatacag
     2101 atacttgcct gcctacccgg tttattaggt aatggaacga cctcgttgag tgcaaatcct
     2161 tttttcacgt ctatgtcttt taacaccatg gtcaactcaa cagactgcgt aaattttcgt
     2221 tttgtgctca gttcacgcgc agattttacc aaatttataa gctgattatc attaagcatg
     2281 ttgtccctaa aagattcaga ttttggcagc catttaaaat cgtttacaag gtgcttatct
     2341 agccttcaat tcctcaatga aaatagccta tttattaaat caaaagcggg cccggtgggc
     2401 ttcgatccca cgacttccgg ctttcttcat agtagttctt tagaaggcag gcgctctatc
     2461 catgctgagc tacgagcccg aagttctcag gttctcatgc tttaaatcca acctaacgca
     2521 tggtattaca aaaattggag atgagccctt ataaactgtt tttatgcctg gttccatacg
     2581 ttaattcttc ttgggtctta ggcacaacaa gagaccgact taactgcttg ttcttggaaa
     2641 atttctaggt gtcacacctc atagtgaatt ccaatgccag gatcataact tgtagtgaca
     2701 ataaatatat tagcaaccaa aagcaaatta gttacactta ccaaaattta actgtagcat
     2761 tgattaggga atggaaaata tgactaatga gactaattca aaggaaaatc acgctgaaag
     2821 caaaccacct ttaagcgtca tgggatcgga ttctgcctac gataagtgga atgaaattat
     2881 tcaactcccc tcgataggac cgattaaagc atttacgaag gattacaacg aatactgttc
     2941 agagttattg cttcttacca agactctcat tgatctttac ggtagtttga atgggtactg
     3001 gatacaaatg agtagtgcat atacacaagc cttaaacaat gttggaaaaa agaaattacc
     3061 aaagtcggat ccatgggatt cggagcaatt tcgaatgatt ttgatagatg catttgaaga
     3121 tgcttttact tccctattta cttctaagga attcgccaag gcatataatg aagtttcaag
     3181 caatcagata gagcttgtaa attgcgtaca tagaattttt gaaaaaaacc tggagaccct
     3241 aagattacca actaggtctg aactagatgt aatactagag gacattaatg aattaaagag
     3301 gaatattcgg gatatgcgta aagaactcga aagtggtacg attcatggaa gagcgaacaa
     3361 ttctgtctag agaaactggc acttctgaat acgaaaaagt agtgaagaga tcaataaacg
     3421 atggaccttc cgtacaagag gaagtgctca ggaaattgaa taagactcga gagattttat
     3481 ccgaatcaga ggacatccag gtagggacga ctccaaatga ggttttatac gaaacaaggt
     3541 tgtttaggct gctacactat agaccaattg taaataagac agcacgaatt cccttactag
     3601 tagtatatgc actcataaac aagtcgtaca ttctagacct tcagccaaat aaaagttgga
     3661 tccggaacct tctgagtcaa gggtttgata tctatcttct agattggaaa tcacctgtaa
     3721 atgcggataa atacacctct ttcgatgatt atgttaatta ttttatagat gatagtgttg
     3781 acattctaag aaacaggaat tcagtagata aaataacctt gcatggttac tgtatgggct
     3841 catcgatgtc agtcatgtac accgctttac atcaagacaa gataaagaac ttggtaacga
     3901 tagcgcctgt tttggataca agaaaagata ctactgtgat agcaaatctg gctcgatata
     3961 tggatattga taaattagta aattctatcg gaaatctgcc gtcacagaaa ctttacgaat
     4021 gttattccgc gttgaaacca tttaaacagg gcgtaaataa atattataat ttagtacaga
     4081 acatagataa tgattcgttc gtgcagaatt tcatgaggat cgaaaagtgg ttgtacgaca
     4141 ccccaccaat cgcgggagaa acagcaagac agtggattaa ggatgtttat cagagaaatc
     4201 tcctattcaa taacgagctg aggttaggga gtaagactgt aaacttgtca aaaataaatg
     4261 ttcccttact caatatagtt gcagaagaag atcatcttgt ttcagcagag tgtagtgttc
     4321 cacttaacga agcagtttca agtgatgata agcgcttaat gagatttcat accggtcatg
     4381 taggtctcat agctagtagt tattcacaga ataacgtgtt acccaaagta ggtcagtggc
     4441 taaagagtcg ttctcagtag tttgttctca atttaatctg caagtttccg taaaaattga
     4501 atatcatact catcaagaat tttggcttct atttgacaaa tatttcaagc taaaaccatc
     4561 atgatttgtc gctgcttttt tttcttcttt ctattggaat tataataacc tgaactagat
     4621 caccatcatc aatttttagc gcctgtcttt cggcctcagg aatcgatatt ctccctccac
     4681 tctgaatggt agtcttgaac atcgcgttgt aaaatgtcag cccttgtaac attgtaaaaa
     4741 aattatgcat agcatcctgc tgtaggtttg agaattgctt caaaaattca ttttgagctt
     4801 cacttccttt ttccacggcc ttcttgtatg atgacattgt atcatcaata tcatggttgc
     4861 tgcccataga acctactttg taaggcgttt atttaatatt attgaatgga cccataaaat
     4921 ttagtactat attagcaaat gaacgtggtg tctcagtaaa aggtgtatgg ccagaatttg
     4981 gaattactgt taacttcgaa ttcggaattt ttctatattc atctgcatat gatggtggga
     5041 tcattctatc ctcttctccc caaactagca gtgtaggcga cattattcct tttaatctgt
     5101 ctgccaggtc ctctatattg cggattccca atagtgttga cataaaggca tattttgcat
     5161 tgggaagttt catcctgtta acaaaatcct tgattgtgtc ttccgttact gtttgcggat
     5221 cataagccat gtcaaaaaag gcgcgccttg cgttttcatt ggtgggatac aatgcagcta
     5281 gaatatactc atcgagagtc ttagtagagg tcttcatact gcctgcaggt gagacaagta
     5341 ccaacttgtt taccacactt tcaaatttca aggcaaattc ggctgccacc agccctccga
     5401 acgaggaacc aattatatgc gttcttttaa cattcgtaag actcaaaaat ttacttacga
     5461 aattgacaaa gaaattaatg ctatattcta cggtcggttt atcactatac ccaaatccaa
     5521 cgatgtcagg aactattatc c
//
LOCUS       DASSIK010000086         2494 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1307589, whole genome shotgun sequence.
ACCESSION   DASSIK010000086 DASSIK010000000
VERSION     DASSIK010000086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2494)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2494)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2494
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1307589"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            241..2442
                     /locus_tag="VFI64_01665"
     CDS             241..2442
                     /locus_tag="VFI64_01665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor EF-2"
                     /protein_id="HET7242025.1"
                     /translation="MPKFKSTQDIIRIIGNKDQIRNFGVIAHVDHGKTTMSDSLLAAS
                     GIISPSVAGQALALDSMKLEQNRQMTIRGANVTLFYELEGKEYLINMIDTPGHIDFTG
                     RVTRALRAIDGVVVVSDSVEGIMTQTETVTRQALEERVRPVLYINKIDRLVKELRLDP
                     PAMQKWLSNIIAEFNKLIDIYAEPEIKEKWKVSIQGNTVAFGSAKDRWGFNYNTVQKK
                     GISFKDVYDAYTSTNPNLIKELAEKAPLHDAVLGMVVQHHPPPHVAQRYRIPKIWPGD
                     LDSDTGKALLACDEKGPIIMMVTTINVDQQAGRVATGRLFSGTVKDGDELYLLDAKRT
                     GKIQSVNIYMGNTRELVNIIPAGNIPALLGLDYAVAGETLSSVKTIPAFESIKYVSEP
                     VVTIAVEPKHPKDLPKLVEALRRITVEDPNLIIKINEESGETLMAGMGVLHLEIATSL
                     LQEAGLDITTTQPLINYRETIRASAGPIMSKSPNRHNKIFMRVEPLGEDIIEMIKTGH
                     IKEDMDKKEMAKILRAKGWEADQAKKVAAVDPLGNLLVDETKGVQFIQESMDSIRSGF
                     DDVVHEGPLARETVRGIKFVLHHFVPHEDPAHRGLAQLMPATRRAMLGCMLIADPILL
                     EPILGIEIKCPQEQIGTVAGILSGKRGKLLNVDQKGVISIIQGEVPASETFDLSEIMR
                     GGTAGKALWNTYFKTWQPVPQSLIKSIIADIRKRKGLNPEPPSADEFIDKE"
BASE COUNT          812 a          466 c          570 g          646 t
ORIGIN      
        1 tacacttcac agcgagttaa ttatgctcct gcaatttctt tctttagggg gaatagaatt
       61 cctggtgcgg gcaatataac aaatcaaaaa agttttcaaa tgatgagcga tagtctgact
      121 tcgcaaaatc aaactgtttc atcgcaaatc tgatcgcctc tgactcgaag ttcaccataa
      181 tctgtgaaga atataaggaa ggtttaataa cggtggacag attttttctg gtctgtactt
      241 atgcctaaat tcaaatcaac tcaagatatt attaggataa taggaaataa agatcaaatt
      301 cgtaattttg gtgtcattgc tcacgtggac catggaaaaa ctactatgag cgatagcctt
      361 cttgctgcgt ccggaataat ctctccaagc gttgcaggtc aagcattagc gttagactcc
      421 atgaagctgg agcaaaatag acagatgacc ataagaggcg ccaatgtcac tctcttttac
      481 gaactagagg gcaaagaata tctaattaat atgatagata ccccaggtca catcgatttt
      541 acaggcagag ttactcgtgc tttgcgagca atagacggtg ttgtagtggt atccgactcg
      601 gtagagggaa ttatgaccca aactgagact gtaacgcgac aagcactaga ggaaagagtt
      661 cgtcctgttc tttatatcaa taagatcgat aggttagtca aagaactgag attggaccca
      721 ccggctatgc aaaaatggtt atccaacatt attgcagagt tcaacaaatt aatagacatt
      781 tatgcagagc cagagatcaa ggagaagtgg aaagtcagca ttcagggaaa tactgtggct
      841 ttcggttcag ctaaggatag atggggtttt aattacaaca cggtgcagaa gaaggggatc
      901 agtttcaagg atgtgtatga tgcatataca tcaaccaatc caaatctaat taaagaactc
      961 gcagagaaag cacctttgca tgatgcagta ttaggtatgg ttgtgcaaca tcatccgccg
     1021 cctcacgtgg cacagcgata cagaatacca aaaatttggc caggcgattt ggattcggac
     1081 acaggtaaag cgttgctggc atgtgacgaa aagggtccta ttatcatgat ggttacgacc
     1141 atcaacgtag atcaacaggc gggacgggta gcgacaggaa gactattttc tggaactgtc
     1201 aaagatggag atgaacttta tctgctcgat gctaaaagaa ctggtaaaat ccagtctgtc
     1261 aatatttata tgggtaatac ccgcgagcta gtaaatataa ttcctgcagg caacattcct
     1321 gctcttctgg gtttggatta tgcagtggcg ggagaaacac tctcatctgt aaagaccatt
     1381 cctgctttcg aatcaataaa atatgtatca gaacctgttg ttactattgc ggtagaacca
     1441 aaacatccaa aggacttacc caaacttgta gaagcgttaa ggagaataac tgtagaagat
     1501 cccaatctca taataaagat caatgaagaa tctggtgaga cactgatggc aggaatgggt
     1561 gttcttcatc tcgaaattgc aacatctctt ttgcaagaag cgggactaga tattacaacc
     1621 actcaaccat taatcaatta tagggaaaca attagagcga gtgctggacc aataatgagt
     1681 aaatcaccga ataggcacaa caagattttc atgagagtcg agccacttgg agaggatatc
     1741 attgaaatga taaagactgg tcatataaag gaagatatgg ataaaaagga aatggcaaag
     1801 atcttaagag ccaaaggatg ggaagccgat caagctaaaa aagttgcagc tgtggatcca
     1861 ttgggcaatt tactcgttga tgaaacaaaa ggtgtgcaat tcatacaaga atcgatggat
     1921 tctatcagat caggctttga cgatgttgtt catgaaggtc ctctggcacg cgaaacagta
     1981 aggggtatca aatttgttct acaccacttt gttccccatg aggatcctgc ccacaggggc
     2041 ttggcacaat taatgcctgc tactaggagg gctatgctgg gttgcatgct gattgccgat
     2101 cctatcttac tcgaacccat attggggatc gagataaaat gtcctcagga acagattggg
     2161 acggttgcgg gtatactatc tgggaagagg ggtaaattac ttaatgtaga tcaaaaagga
     2221 gtcatttcaa ttatccaagg agaagtgcca gcttcagaaa cctttgattt atcagaaatc
     2281 atgcgtggag gaactgcagg gaaagcgctg tggaacacgt actttaagac gtggcaaccc
     2341 gttccgcagt cgttaatcaa atcgattatc gcagatataa ggaaaagaaa gggattgaat
     2401 cctgagccac cgtccgcaga cgagtttatt gacaaggagt gaatttatct aaaaatcact
     2461 catggtcatt attaaatact ctcgcctcat tatt
//
LOCUS       DASSIK010000087         2470 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1393715, whole genome shotgun sequence.
ACCESSION   DASSIK010000087 DASSIK010000000
VERSION     DASSIK010000087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2470)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2470)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2470
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1393715"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..361)
                     /locus_tag="VFI64_01670"
     CDS             complement(<1..361)
                     /locus_tag="VFI64_01670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242026.1"
                     /translation="MKSHSVEDVLHAISDIKSLDMFCLIAKGSIEIDVLKQTKGLSTK
                     QYYSRTEDLLEVGLIKRKKRRFSITAFGAVVYHAQLVIESGIKNYWKLKAVDSIQSST
                     DIGEQERVKLIKSILGDI"
     gene            528..1433
                     /locus_tag="VFI64_01675"
     CDS             528..1433
                     /locus_tag="VFI64_01675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242027.1"
                     /translation="MHLETVPVLAEDVFAIIGDKQSVQILTAASTGLRSSSNGIGNQT
                     KKQYYVRLKRLVDMGFMEKHQSVYKLTTFGTIVYDHLKTMERILPNYWQIKSIDVLKS
                     RHDFPPEQKEKIMNEYIETSKLKDVINTTHLTSFSVVNKFDDLIVEVLKVLDNAEREV
                     FFATRYYDPHVSSKIFEKFAKGVTIHILDGNPEQISVESRLAAIIRTPPNRETAEKVK
                     KITKSSRFDLKRLPELPLSFMVVDGIQVIYDTMNFINPEQFTIAISKYDDTYTAKRFI
                     EYFKTLSKDATIPKLLEEMRIRSNS"
     gene            complement(1658..1951)
                     /locus_tag="VFI64_01680"
     CDS             complement(1658..1951)
                     /locus_tag="VFI64_01680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242028.1"
                     /translation="MNKYLEIIIIVAVLSAVLASLKLTHGQSGNLTVNQTTGQKNQTE
                     AYSSILMGVIKNANITIPPELHPTTQQLEQIADEIVNGGHPSKILDDIRQNKS"
     gene            2136..2345
                     /locus_tag="VFI64_01685"
     CDS             2136..2345
                     /locus_tag="VFI64_01685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242029.1"
                     /translation="MKSRTSLHTPVVKMTSIKIGIKPDLKLMTIFWMDNQKLVSHVWE
                     RRKSLAHQLRDGYGPTYTHKSLLRI"
BASE COUNT          785 a          439 c          459 g          787 t
ORIGIN      
        1 taatgtcacc taaaatgctc tttatcagct tgactctttc ctgttcccca atatcagttg
       61 acgattgaat tgaatcgacc gcttttaact tccagtaatt tttgattcca gattcaatga
      121 cgagttgagc atggtacaca actgcaccaa aggcggtaat tgagaaccga cgtttttttc
      181 tctttatcaa tcctacctct aatagatctt cagttcttga gtaatattgt tttgtgctca
      241 atccttttgt ctgtttcagt acatcaatct caatacttcc tttggctatt aaacaaaaca
      301 tatctagtga cttgatatca gagatggcgt gaagtacatc ctctacagaa tgactcttca
      361 tgatgctaac atgccttaca actgtaagtt ccatcatgac tatattaagg cactttatca
      421 atcagtggag aaatatcata atcattgtca acgattagtg aaattttact tgattctccg
      481 aaaagttatt aatggtttac acaatatgat aaaatgtaag aaattatttg cacctagaga
      541 ctgttccagt actagcagaa gatgttttcg ctattatagg agataaacag tcagtgcaga
      601 tcctcaccgc tgcatctacg ggattacgat catcttctaa tggcataggt aatcaaacca
      661 agaagcagta ctatgtgagg ctgaaacggc tcgtagatat gggcttcatg gaaaagcacc
      721 aatctgttta caaattgaca acatttggta ctattgtgta tgaccatcta aaaacaatgg
      781 agaggattct tccgaattac tggcagataa agagtattga tgttctaaag agtaggcatg
      841 acttccctcc agagcagaaa gagaagataa tgaacgagta tattgaaact tcaaagttga
      901 aggatgtcat caatacaact catttaacaa gcttcagtgt cgtaaacaag tttgatgacc
      961 ttattgttga agtcctaaaa gtattggata atgctgagag ggaagttttc ttcgcaacca
     1021 gatattatga tccacatgtt tcatccaaaa tatttgagaa atttgctaaa ggtgttacca
     1081 ttcacatcct agatggcaat ccagaacaaa ttagtgtaga gagtagactt gctgccataa
     1141 ttagaacacc tccaaataga gaaactgccg agaaggtgaa gaaaattact aaatcatcta
     1201 gatttgattt gaaaagactg cctgaattgc ccctcagctt tatggttgta gatggaatcc
     1261 aagtcattta tgacactatg aatttcatca atccagaaca atttacaatt gcaatatcaa
     1321 agtatgacga tacttacact gccaagcgat ttattgagta ctttaaaacg ttatcaaaag
     1381 atgcaacaat tccaaaacta ttggaagaga tgcgaattcg ctcgaacagt tgaagttagg
     1441 ctaatcttaa attatagggc attagctaaa tttttctatt agtgttgtca gatcgtcaac
     1501 tgaaaaaggc ttctttaata tagcttttac accactactt tctttatgaa atgtgctgat
     1561 tctattaatt ttcataattg caactactat cgcctagttg tgtgagcact tcctcaaaaa
     1621 tgaatttttg cttgtgttat tattgttgaa aggttagcta gctcttgttt tgtctgatat
     1681 cgtctagtat cttagatgga tgaccgccgt ttactatctc atcggcaatt tgttctaatt
     1741 gctgcgtagt ggggtgtaat tctggtggta tggttatgtt tgcatttttt ataactccca
     1801 tcaatatgct actatatgct tcggtctggt ttttctgtcc tgtagtctga tttacagtca
     1861 ggttaccgga ctgtccgtga gttaacttta aagatgcaag aacggcgctc aggactgcga
     1921 ctatgattat aatctctaga tacttattca atttgataac ttacaagtac ccacctttaa
     1981 actgatggag ctaaatcaaa gactgatgca aggaagttgt tttggtatcg gctccccaca
     2041 tcagccttga tgaaagaagg ccaagtatac tatagcaata atattgtatt aaacttggag
     2101 acgattttca aaatagataa taagaaaact gatgcatgaa gagccggaca tccctccata
     2161 caccagttgt aaagatgact tctatcaaga taggaattaa acctgattta aaactaatga
     2221 cgattttctg gatggataat caaaaactgg tgagtcatgt gtgggaaaga cgcaagagtt
     2281 tggctcacca gttgcgtgac ggatacggac caacttatac gcacaagtcc ctattaagga
     2341 tttaatttga aaataaataa tgataaagag ggtctggtaa attccggtgg agaaactact
     2401 tccctctttg acgtagggga acgtcaactt ttccaatttc ataaatttaa tttaaacgta
     2461 ttgaggtttt
//
LOCUS       DASSIK010000088         3567 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1197067, whole genome shotgun sequence.
ACCESSION   DASSIK010000088 DASSIK010000000
VERSION     DASSIK010000088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3567)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3567)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3567
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1197067"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2729)
                     /gene="carB"
                     /locus_tag="VFI64_01690"
     CDS             complement(<1..2729)
                     /gene="carB"
                     /locus_tag="VFI64_01690"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005951 - carbamoyl-phosphate synthase
                     complex [Evidence IEA];
                     GO_function: GO:0004088 - carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) large subunit"
                     /protein_id="HET7242030.1"
                     /translation="MHSILINPNIATIQTDTRFADKVFLLPVTRSYVEKIIEQERPDS
                     IMLSFGGQTALNCGVTLNDEGVLNKYGIKVLGTPITGIKITEDRQEFKNAMIASRVPV
                     LDSAPAHNMEEAIEIANNIGYPVIIRVAYTLGGKGGGVAHNEYELQEIVQRGLPQSIV
                     HQVLVERYVGSWKQIEYEMMRDSTGNAITVCNMENVLAMRVHTGDNIVVAPSQTLNNE
                     EYQKLRSAAIRAVQHCNILGECNVQFGLDPTSEDYCAIEINARLSRSSALASKATGYP
                     LAYMAAKICLGYSLTELVNSITKTTTACFEPSLDYVVLKMPRWDFRKFELVSRKLGTS
                     MKSVGEVMAIGRSFEEAVQKAIRMTDTGKHGLVCNDDSELEENLEIVEEGLLHPDDEV
                     LQTVVKAIKLGISINTIYRLSAIDPWFLTRIKNVIELEKKLRDSDLSENLLKVAKRYG
                     FSDHQIGKCVGLNEMSVRKLRQKLGIIPVVKQVDTLAAEWPAKTNYLYLTYGGEKNDI
                     VYDKNNRGVIVLGAGPYRIGSSVEFDWSTVNMVWSLKENGIESVSVINCNPETVSTDY
                     DISDRLYFEELTLERVLDIFEKEQSAGIVTCVGGQVANNLVPKLGKLGIPIIGTASTN
                     IDMAEDREKFGKLLDSLNIKQPPWKKFTNMAEAIAFCHKTGYPILVRPSYVLSGAAMR
                     VVWGEEQLERFLNEAIHLSPEYPIVITKFLQEASEVEVDAVSNGEEVIIGSLVEHIDN
                     AGIHSGDAMMCIPPWRLTRKTMNTIVEYTKMIALSLKVKGPLNIQYLVKDDQVYVIEA
                     NIRASRSMPFVSKIVGINIIALAAKAVLGKPLPKEAGNLWMRVPGFGIKVPQFSFMQL
                     EGADVVLGVEMQSTGEVACFGESFYDALSKAYEAAGYSLPLSGSALITIGGQR"
     gene            complement(2873..>3567)
                     /locus_tag="VFI64_01695"
     CDS             complement(2873..>3567)
                     /locus_tag="VFI64_01695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase small subunit"
                     /protein_id="HET7242031.1"
                     /translation="IKEYGSHSLPPVVLIDTGVKYSIIRNIIRIGFRVICVPWDTPTI
                     DILSYSPVGVVISNGPGDPKMCKSTIKTANDLINLSVPTLGICLGNQIIALAGGGNTQ
                     KLKFGHRGQNKACTEVGTNRTFITSQNHGYGIEPESLRGTEFDIWYFNTDDRTIEGVT
                     HRSKPILAVQFHPEASPGPYDCMFVFEKFKEMILNDNIGYQRQKPENMTTSSRTGTKE
                     KKTGGRKGVSEK"
BASE COUNT          949 a          827 c          608 g         1183 t
ORIGIN      
        1 tatcgttgac cacctatcgt aattaacgcg gaacccgaga gagggagtga ataaccagca
       61 gcttcatagg ccttagataa cgcatcgtaa aaactttccc caaagcaagc gacctctcca
      121 gtagattgca tttctactcc gagaacaacg tcagcgcctt ctaactgcat gaatgagaat
      181 tgaggaacct taattccaaa accaggaact cgcatccata gattgcctgc ctctttcggc
      241 agaggtttcc caagaacggc tttggcagca agtgctataa tattaatccc tacaattttg
      301 gatacaaaag gcattgagcg ggatgctcgt atgttggctt caattacata tacctgatca
      361 tcctttacca gatattgtat atttaacggc cccttaacct ttagtgaaag tgctatcatt
      421 ttggtatatt ctacaatagt attcattgtc tttctggtca aacgccatgg tggaatgcac
      481 atcattgcat caccagaatg aatacctgcg ttatcgatat gttctaccaa cgagccaata
      541 ataacctcct ctccgttaga cactgcatct acttcaactt ctgatgcctc ttgtaggaac
      601 ttggtaatta ctattggata ttcagggctt aggtgaattg cctcgttcaa aaatcgttcg
      661 agttgttcct ctccccagac tactctcatg gctgccccac tcaatacgta tgaaggtcta
      721 accaatattg gatagcctgt cttatggcaa aatgctattg cctcggccat gttcgtaaat
      781 tttttccatg gcggctgctt aatatttaag gaatcaagta attttccaaa cttttccctg
      841 tcttctgcca tgtctatgtt cgtgctagca gtacctataa ttggaatccc aagtttaccc
      901 aactttggta ctaagttatt agctacctgt cctccaacac aagtcacaat gcccgctgac
      961 tgttcctttt caaagatatc tagaactctc tcaagagtta actcttcaaa atataatcta
     1021 tcggagatat cataatcagt cgaaacggtt tctggattgc aatttattac tgatacagac
     1081 tctatcccat tctcctttag gctccatacc atattaacag tactccaatc aaattcaacg
     1141 ctacttccaa ttctgtatgg tccggcacct aatactatta ctcctcggtt atttttatca
     1201 tatactatgt cgtttttttc tcctccatag gttagataaa gataattggt ctttgctggc
     1261 cattcagcag ctagggtgtc aacctgcttc actacgggta ttattcctaa tttttggcga
     1321 agcttcctga cactcatttc attcaaacca acacattttc cgatttgatg atcagaaaat
     1381 ccataccgtt tagcgacttt taggagattc tcacttaaat cagaatcccg caattttttc
     1441 tctaattcta tgacattttt tattctagtt aaaaaccaag gatctattgc tgaaagccta
     1501 tatattgtgt ttattgaaat tcccaactta attgccttta cgacggtttg taatacttcg
     1561 tcgtcaggat gtaacaatcc ctcctctact atttccaaat tttcttctag ctctgaatcg
     1621 tcgttacaaa ccaagccatg ttttcctgta tcagtcatac ggattgcttt ttgtactgcc
     1681 tcttcaaagg atctaccaat tgccatgact tcacctaccg acttcatgct ggttccgagt
     1741 ttcctactca caagttcaaa ctttctaaag tcccatcttg gcatttttaa aacaacataa
     1801 tctaaagatg gctcaaaaca cgcagtggta gttttagtta tgctattcac aagctcagta
     1861 agagaatatc caaggcatat ctttgcagcc atataggcta ggggatatcc agttgccttg
     1921 ctggccaaag cggaggatct agaaagtctg gcgtttatct caatcgcaca atagtcttca
     1981 gaagtgggat ctaacccaaa ctggacatta cactccccca gtatattgca atgttggacg
     2041 gctctgattg ctgcagagcg aagtttctga tattcttcgt tattgagtgt ttgagagggt
     2101 gcaaccacaa tattgtctcc tgtgtgaacg cgcatagcaa gaacgttctc catgttgcaa
     2161 actgtaatgg catttcctgt agaatctcgc atcatctcat attcaatctg tttccaactt
     2221 ccaacatatc tttctactag gacctgatgt actatacttt gtggtaatcc tctttgaact
     2281 atttcctgca gttcgtattc gttatgcgca actcctccac ctttgcctcc aagtgtgtat
     2341 gcgaccctta tgatgacagg atatcctatg ttattggcaa tttcaattgc ttcttccata
     2401 ttgtgtgctg gggcactatc taaaactggt accctactag caatcatcgc atttttaaat
     2461 tcctgtctat cttctgtgat ctttattcct gtaattggag tgcctaaaac cttaatacca
     2521 tatttattta acactccttc atcatttagt gttacaccgc aatttagagc agtttgacca
     2581 ccaaagctca gcattatcga gtcaggcctc tcctgctcta ttattttttc tacatagctt
     2641 ctagttacag gtaacaaaaa caccttatcg gcaaatctgg tgtcagtttg aattgtggct
     2701 atgttgggat ttattagtat gctatggata ccttcttcag ataatgcctt gaggcactga
     2761 gatccggagt aatcaaacta gcggccagaa tcattaatac tgattctgac tttcgccggc
     2821 ttctccgatc ttaattgcac cgctgccaag cactaccgtt ttctttatcg attcattttt
     2881 cggaaactcc cttcctacct cctgtctttt tttccttagt tcctgtcctc gaagatgtag
     2941 tcatattttc aggtttttgc ctttggtaac caatattatc attcaaaatc atctccttga
     3001 acttttcaaa aacaaacatg cagtcatagg gaccgggaga agcttcagga tgaaattgta
     3061 ctgctaatat tggctttgat ctgtgtgtca ccccttcaat agtcctatca tcagtattga
     3121 agtaccatat gtcaaattca gttccgcgaa ggctttcggg ttcaatacca tatccatgat
     3181 tctgacttgt aatgaaagtt ctgttagttc caacttcggt acatgccttg ttttgacctc
     3241 tgtgcccaaa ttttaatttt tgtgtattgc ctcctccagc caatgcaatt atctggttcc
     3301 caaggcatat tcccaatgtt ggtaccgata aattaatcaa gtcattggca gtctttattg
     3361 ttgacttgca cattttggga tctccaggac cgttgctaat aactacaccc acgggactat
     3421 atgacaagat atcaatggtg ggagtatccc aaggaacaca aataactctg aatcctattc
     3481 tgatgatgtt acggattatg ctatacttta ctccagtatc gatcaatact acaggtggta
     3541 aagaatggct tccgtattcc ttgatct
//
LOCUS       DASSIK010000089         4355 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_410209, whole genome shotgun sequence.
ACCESSION   DASSIK010000089 DASSIK010000000
VERSION     DASSIK010000089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4355)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4355)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4355
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_410209"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            25..234
                     /locus_tag="VFI64_01700"
     CDS             25..234
                     /locus_tag="VFI64_01700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242032.1"
                     /translation="MNILDHSGRSGYVCGIFRVSKAPSKTRVSVGEDYDVMVKDLKRH
                     RTEGRGKIKGCIVWAMKSVECKFND"
     gene            complement(809..1069)
                     /locus_tag="VFI64_01705"
     CDS             complement(809..1069)
                     /locus_tag="VFI64_01705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242033.1"
                     /translation="MKDARLLKILVEEKALVKLLRTIGQGKGYPTRELLTKLGAYGYG
                     HKLLLKAHKRGLVDRKTVKNKVYNSLTSDGRKIVMIAREIGL"
     gene            complement(2602..2994)
                     /locus_tag="VFI64_01710"
     CDS             complement(2602..2994)
                     /locus_tag="VFI64_01710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242034.1"
                     /translation="MQFESESTLPARMIAKHNDESWFKDLKKLTNDELMRMYTTIRSG
                     GYEFAKDAWYIPQPFAKDQRCPVMVAKGYSTPDTPQKMIRFQDTAKTLEQEFRGFIDA
                     WDFGLITKEIISDAILFILERRTIAIME"
     gene            complement(3082..4125)
                     /locus_tag="VFI64_01715"
     CDS             complement(3082..4125)
                     /locus_tag="VFI64_01715"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HET7242035.1"
                     /translation="MKIAVVGIGVAGAYLMNRLGDDHDNHVVGFERMSDKTHDAVCAW
                     ATSENTMSGLIAKCGLNFDDYILHQGECMTVDIGKDENFCAAESIDLRLKGMVSYDKL
                     KVIQDMIRGTDIRFGKVPNKKDLEDNFDLIVDSTGFYRDYLPKPSNETWIPCVQYKMK
                     YESGKTPFDDFYLKAFPSMAGYFWYFPLGNGYAHIGAGDYQRKNNNRFVEKFLHRYKG
                     QIIKKVGRPVRISPPKNSEPFTDGRKTIGVGESIGTVYPLLGEGIIPSTWCAELFIQN
                     LENLSQYRRSVLKKFEIYSLVFKFIQRKISGRFSFFKNAFELLRLYNHMKGQEDRYGM
                     EIRAGDLMKVAKL"
     gene            complement(4150..>4355)
                     /locus_tag="VFI64_01720"
     CDS             complement(4150..>4355)
                     /locus_tag="VFI64_01720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242036.1"
                     /translation="NAALSIYVPIPTHIAPRTRRNNPALTDPGIFILDIDRTRLHLSI
                     YKSMGIEIVGTMIVVNASSFLSS"
BASE COUNT         1383 a          808 c          788 g         1376 t
ORIGIN      
        1 attaaagagg gttgctgaaa tgaattgaat atacttgatc attccggcag aagtggatac
       61 gtatgtggca tttttagggt ttcaaaggca cctagtaaaa ctcgtgtgag tgttggagaa
      121 gattatgatg tgatggtcaa agatttgaaa aggcacagaa cagaaggaag aggcaaaata
      181 aaaggttgca tagtctgggc aatgaaaagt gtggaatgta aattcaacga ttgaaatctt
      241 gtcttgaaag atgccaatta gaaaaatgat gaaaaatttg ctaaagaatt gacgaaggaa
      301 tttcatttat aatggcttgc aaggggatat gttttagaca taaagctata aaaccaattg
      361 gacgtggcag atacgctgct ggtcaaaaac ggtgccaaat atgtagtatc tttatcaaat
      421 gggaaagttt tttttgtccc tgttgtggat acagacttcg gacaaaacca aggtaccaga
      481 ggtataagtt aaaactagcc aaaataatcc ccaacaaagc cctctagact gtagttcact
      541 tttgatgaga aaaataagtc aacacggtaa ggcgtatgaa tgctttagat gttcaatagt
      601 tttaagaaga attgtttttt tcttgaagtt atgtgcagtg gattatagat aaaattgggg
      661 gaagactaag aaagaaggag gaaatagaag agcaacgctg tgttcatttg gacgttatta
      721 agtacgcatc aggcgttttg cttttcttaa cggtatcaaa aattgagcac ttatcaatcg
      781 catttgttaa gtgaactcca ctaaattact agaggcctat ttcccttgct atcattacaa
      841 tcttcctccc gtcactagtc agactattat agaccttgtt tttgacagtc tttctgtcta
      901 caagacccct tttatgcgcc ttcagaagta gcttatgtcc atatccatat gctcccagct
      961 tggtcagtaa ctctctagtc ggatatccct ttccctggcc tattgtcctt aataacttga
     1021 ccaaagcctt ctcttctacc aatattttga gtaatcttgc atccttcatg ccataattct
     1081 aaatgtataa acatataatc gttacgaatt gttagaaaca cgatacatca tataaatgcg
     1141 gatcccatcc tgggcatgct aattttcgta gggagatttt tagataaatc acctgtccat
     1201 tgttctggac ttgggcatgt atataggtgg ggatagaaca aaatgtacta aactatatcc
     1261 tgaaatttgt gaggctttat ttactttggc acgcttatcg ccgtctccta tatcctactg
     1321 ctggtataaa tgatgattga ctacttgtaa aggctaccta atccatatgt catagtttca
     1381 gagttaattt tactctcgat ggcgctgcta aagttactca cagctctaca caattttgta
     1441 cgataagcat aaaaattacg gaaaacagaa ttaaggggaa aacaagaagt tctaaaatca
     1501 acaacaagca tctaaaacat tgactattct ttatcttaaa ataacacgaa ttgacccatc
     1561 cgagtagagc aacagaggat cattttatca aacattaatt tctgaaaaga caacagttgc
     1621 agtatcattt ctaatttttt aacagtagtt agcataatgt catccgctat gatatttaat
     1681 gtggtaatac caatagaatt caattattgc aacagcttca gatttcaagc attcgaattt
     1741 ggtatatgaa aaataataaa actaagatta attcgggggc gactaggaaa tacattaaat
     1801 acaaggtgag tattcccagt aatagacacg attggttcaa cccataatac tttcaaaagt
     1861 tagacctatc ataatgcgcc ggatactttc aattgtcaaa aggagacaag gcggcaaatg
     1921 ccacttttgt agtattctct ttactaaaga agatatttta gtaagtcgga cgttattgta
     1981 gaaattatta tcagatatca tgtgcaaaga ctttgcatat catataatat aggttgggaa
     2041 aggtttgaga actttctata ttagatgaac aagtgaagaa aagatttgga acaatttaag
     2101 actgtcatac ggtcaaaatt tattgctacg gtttttttgg cacgacgttc tagacaagag
     2161 atttttcaga acactaatta aataaattaa taaactccac aaatcataga atggtactct
     2221 acttatgaaa ctcctgggat tgtttggcat gatcttttta atgtgggtta tgataaatac
     2281 ggtttcatta tttttgattg tggtagttgc gccattgcat atttctattt ttcacaatat
     2341 cacagatcga tttattactt ctgcagtcca ggcagtacta gcaataggaa tagtcataat
     2401 attgataata ttgttaagca aaatgaaaag cctgtaccta aagcgtacca ttaatattac
     2461 atgaggtgaa tgagctcaat cgtgccaccg tatctaaatt tagtatgctc ctaattaatg
     2521 aatagccaga aagggtttac tcttccgcaa taaaagtccg tgatggatgt aaaatgatgg
     2581 aacccgactg tatagatgag cttactccat tattgctata gtcctgcgtt cgagtatgaa
     2641 taatattgca tccgatatga tttcttttgt tatcaatcca aagtcccagg catcaatgaa
     2701 ccctctgaat tcttgttcta gtgtctttgc agtatcttga aatctaatca tcttttgtgg
     2761 agtatctggg gttgaatatc cctttgctac catgaccgga cacctttgat ccttagcaaa
     2821 tggttgagga atataccagg catcctttgc gaattcatac ccgcctgacc ttatggtagt
     2881 gtacattctc attaactcat cattagtaag tttcttcaaa tccttgaacc aggattcatc
     2941 attatgttta gctatcatac gagccggtaa agtactttcg ctctcaaatt gcaagtgtac
     3001 aacccaatag agatatctca ttttaaaaac attttcaatc taaccatgcc ttgataacgt
     3061 tagagtatgg atgtgagagg tctacaattt cgcgaccttc atgagatcgc cagctcttat
     3121 ttccattcca tacctatctt cttgcccttt catatgatta tataacctga gtaattcaaa
     3181 ggcattcttg aagaaactaa accgtccact aatcttcctc tgaatgaatt tgaacacgag
     3241 tgaatatatt tcgaattttt tcaatacgga cctccgatac tgactaagat tttccagatt
     3301 ctgaatgaat aattcagcac accacgtgga aggaataatg ccttctccaa gtaagggata
     3361 taccgtgcct atggattcac caacaccgat agtttttcga ccatctgtga atggttcgga
     3421 attttttgga ggactaattc taacaggacg gcccactttc tttataatct gtcctttata
     3481 tcgatgaaga aatttctcaa cgaaccgatt attatttttc cgttggtagt cgccggcacc
     3541 aatgtgtgcg tacccgttgc ctaaggggaa ataccaaaaa tagcctgcca tagaaggaaa
     3601 agcttttaga taaaaatcat caaatggcgt ttttccgctt tcatatttca tcttgtattg
     3661 tacacaaggt atccacgtct cgttcgacgg cttaggtaga taatcccgat aaaaaccagt
     3721 ggaatcaacg ataagatcaa aattatcttc gagatccttc ttgtttggaa ccttgccaaa
     3781 acgaatatcg gttcctctta tcatatcttg gattacttta agtttatcat aacttaccat
     3841 tccctttaat ctgagatcaa tgctctctgc tgcacaaaaa ttctcatcct tgcctatatc
     3901 aaccgtcata cattcgcctt gatgtaaaat ataatcgtca aaattcaacc cacattttgc
     3961 aataaggcct gacattgtat tctcagaagt agcccaagca caaacagcat catgagtttt
     4021 gtccgacatc ctttcaaatc ctaccacatg attatcatga tcatcaccaa gcctgttcat
     4081 tagatatgct ccggcaactc caatgcctac aactgctatc ttcatatggt aacggaaact
     4141 gtactggttt tagctagata aaaagcttga tgcgtttaca actatcatag ttccaacaat
     4201 ttcaatgccc attgatttat agatggataa gtgcaatcgg gtacgatcaa tgtccaaaat
     4261 gaatatgccg ggatcagtta gagcagggtt gtttcttctt gtcctaggag caatatgtgt
     4321 gggaataggc acgtatatcg ataaagccgc attgt
//
LOCUS       DASSIK010000090         2125 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1308647, whole genome shotgun sequence.
ACCESSION   DASSIK010000090 DASSIK010000000
VERSION     DASSIK010000090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2125
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1308647"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..290
                     /locus_tag="VFI64_01725"
     CDS             <1..290
                     /locus_tag="VFI64_01725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cobalamin biosynthesis protein"
                     /protein_id="HET7242037.1"
                     /translation="LALDSVRNISSLNKNDPDGGLKKFSEMFKIPLELYDKTLLAKVT
                     VPNPSQVVKKFEGIPSVSEASAILSSGGDLIIPKHKFPPNLTLAVAKINFG"
     gene            296..1051
                     /locus_tag="VFI64_01730"
     CDS             296..1051
                     /locus_tag="VFI64_01730"
                     /inference="COORDINATES: protein motif:HMM:NF014016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CbiX/SirB N-terminal domain-containing protein"
                     /protein_id="HET7242038.1"
                     /translation="MKRAMLIIDRGSREPEVKEELGAICELVKKKGGYDFTDYCFLEV
                     LPPFIEEGIKRCISENVDTITAMPYFLYPGMKLKESVKKCARLCYDMGIKVIFTKPLS
                     YHSILQKLLIERIEDLKSKMNISSINADCDILVIGHGSSDKGARTAFEYTVNGIMPLY
                     KSVNFCFLELDKPNIEEGVRNIVSKGTGLLIVVPYFLHRGAHTKKDVRDDLYSALEKY
                     RLKEAHLTEHLGADVKMVNLILERAREAESNIV"
     gene            1044..1724
                     /locus_tag="VFI64_01735"
     CDS             1044..1724
                     /locus_tag="VFI64_01735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-8X methylmutase"
                     /protein_id="HET7242039.1"
                     /translation="MFDTDDLKTRSRSREMSEKSLGIEEQSMRIIDSEVGTHKYNYLE
                     WSIVRRVIHATADFDFAKSNGIIFSLNAIESAFRAFQKKQNIVTDVEMVLSGINKRSL
                     GRIGIKALCNLSNEQVIGQAKTSEKTRSALAMRYSLPAISDGIVAIGNAPTALYEIIS
                     MIREDLVMPALIIGIPVGFVSAVESKAELENTKCEYITNLGRKGGTPAVSSIVNALML
                     LYIDEFLK"
BASE COUNT          715 a          353 c          470 g          587 t
ORIGIN      
        1 gacttgcgct cgattctgtg aggaatattt cttcactaaa taaaaatgat cctgatggcg
       61 gactgaagaa attttcagaa atgtttaaga tacccctaga gttgtatgat aagactttac
      121 tcgcaaaggt aacagtaccg aatccttcac aagtggttaa gaaatttgag gggattccaa
      181 gtgtttcaga agcatcggca attctaagtt cagggggaga tctaattatt ccgaagcaca
      241 aatttcctcc caatcttaca ctggctgttg ctaaaattaa ctttgggtga tgattttgaa
      301 aagagcaatg ttgataattg atagaggcag cagagaacct gaagtgaaag aagagctggg
      361 cgcaatttgc gagttggtaa agaaaaaagg cgggtatgat tttacggatt attgctttct
      421 tgaagtactg cctccgttta ttgaagaagg aatcaaacga tgcatttcgg agaatgttga
      481 taccatcacc gcaatgcctt atttcttgta tcccggaatg aaacttaaag aatcagtaaa
      541 aaaatgtgca agattgtgtt atgacatggg aattaaggtc atcttcacaa aaccactgag
      601 ttatcactca atacttcaaa aattgttgat tgaaaggata gaggatctca agtctaaaat
      661 gaatatttca tcaataaatg cggactgcga cattcttgtc ataggacatg gcagcagcga
      721 taaaggtgca agaactgcat tcgaatatac tgtgaatggg ataatgccat tgtacaagag
      781 tgtcaatttt tgttttctcg aattagataa gccgaatata gaagagggtg taagaaatat
      841 cgttagcaag ggaacaggac ttttaattgt cgttccctat tttcttcata gaggagcgca
      901 cacaaagaaa gatgttaggg acgacctgta ctccgcactt gagaaatatc gtcttaaaga
      961 ggcacacctc acggagcatc ttggagcaga tgtaaagatg gtgaatctta tacttgaacg
     1021 tgcgagagag gcagaatcaa acattgtttg acactgacga cttgaaaact cgctcacggt
     1081 cgagggaaat gtcggaaaaa tcattgggaa ttgaagaaca aagtatgaga ataatcgatt
     1141 ccgaggttgg aactcataag tacaattacc tcgaatggtc catcgtcagg agagttatac
     1201 atgccactgc agactttgat tttgcaaaat ccaatggtat aattttctca ctgaatgcga
     1261 ttgaatccgc ttttcgagca ttccaaaaaa agcaaaatat tgtaaccgat gtggagatgg
     1321 tactttcagg catcaacaag agatccttgg gaaggatagg aattaaggct ctgtgtaatt
     1381 tatctaatga gcaggtcata gggcaggcca aaacatctga gaagacacgt tcagcattgg
     1441 caatgcggta ctctctacct gcgataagcg atggtattgt ggccataggg aatgcgccaa
     1501 cagcattata tgaaattatt agcatgataa gagaagacct agttatgccg gccctcataa
     1561 ttggtatacc tgtcgggttt gtttccgcag tagagtcgaa agctgaactt gaaaacacaa
     1621 aatgtgaata tatcacaaat ttaggaagga aaggcggaac tcctgcggtt tcttcgatag
     1681 ttaatgcgct gatgctgctt tacatagatg aatttctgaa atgaatgacc tataaaatct
     1741 aggtatggaa gtacttgtga agaaaaggtg gtaatctatg cattacatct taatcatttc
     1801 attcagtatg tgatacatga aaaaatcacg ggttctcatc atgaacgaac caaaattagc
     1861 tgttaagaat acaatgaatc atcaaaatga tggtcaggaa gtagattcat gttgaatagg
     1921 gacatgtaaa aactttttca caatgtagtg ttgtaacgta acaaaaatgt ctaagcatgg
     1981 aactgattat gaaattcaat tatctgttgg ttacagagtg gtccatgaag tttaatcttc
     2041 cgcaaattgc tcacaaaaac tcaacactat gtaaggacag tcggttcaaa caacaatgct
     2101 gagagtgcca ataaagagac ctttc
//
LOCUS       DASSIK010000091         4179 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1013176, whole genome shotgun sequence.
ACCESSION   DASSIK010000091 DASSIK010000000
VERSION     DASSIK010000091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4179)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4179)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4179
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1013176"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..810
                     /locus_tag="VFI64_01740"
     CDS             <1..810
                     /locus_tag="VFI64_01740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242040.1"
                     /translation="IIEDEEYERFNKQMKILVLDTVIPSLAEYEDVLITREESKIYRQ
                     LDKVLGQAVIETLESQEEIEGYEIVETRNANLSSGDTSSIPAEVPSIKESIDLENEYS
                     DIKRHGTSAVGSDDFGLEKSRQKYEISTVPAEVQAASGIIPSGQTSTFAEQTTEHPTD
                     HIATTKIRKPILKKTFVLKKVGYKVIPYEDESDSRYSFVNENVVFVNKANPTYKAESS
                     RGDEFLLRHIMNIVAQAIAEARHPEGKEALELQNRLISEAIRIHDGLSRSG"
     gene            980..1561
                     /gene="psmB"
                     /locus_tag="VFI64_01745"
     CDS             980..1561
                     /gene="psmB"
                     /locus_tag="VFI64_01745"
                     /EC_number="3.4.25.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000502 - proteasome complex [Evidence
                     IEA];
                     GO_function: GO:0004175 - endopeptidase activity [Evidence
                     IEA];
                     GO_process: GO:0010498 - proteasomal protein catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaeal proteasome endopeptidase complex
                     subunit beta"
                     /protein_id="HET7242041.1"
                     /translation="MPGATAIGITCGDGIVLAAEKRVSYGNFVVNKNTKKVFAITHNV
                     AAACAGMVADMQVLVRQVTALSRIRKLEIRRDVATNSIAKLMSVIMFERRYFPLLTQV
                     VVGGTDPSPQIYTLDPLGSLLPDDYAAVGTGAEMALGVLDSEYKKDISIEVARNLAVK
                     AIKSSIQRDSASGDGIDLVIITDKGIQEDTIKL"
     gene            complement(1624..2106)
                     /locus_tag="VFI64_01750"
     CDS             complement(1624..2106)
                     /locus_tag="VFI64_01750"
                     /inference="COORDINATES: protein motif:HMM:TIGR00451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PUA domain-containing protein"
                     /protein_id="HET7242042.1"
                     /translation="MKAHTLSKREIRDIAGRISKNWPKSIICNIKSLNAIETEKTGRL
                     LVGEGITIVQTKDNLIVPHLVEKDLLSHFPYVIVDMGAVGFICNGANVMRPGITHADG
                     FGESEIVVVKDQVHNKSLAIGYSRVDAQTMMNLEKGPVINNLHYVGDIFWNLKKETRL
                     "
     gene            complement(2181..2726)
                     /locus_tag="VFI64_01755"
     CDS             complement(2181..2726)
                     /locus_tag="VFI64_01755"
                     /EC_number="2.7.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide-nucleotide adenylyltransferase"
                     /protein_id="HET7242043.1"
                     /translation="MKRVLSRGLFIGRFQPFHLGHKASIDFALSQVESLVIVIGSSQK
                     SFEARNPFTSGERILMIKESLNADVDLDQKRLFIIPIPDINIHSLWTAQISNSVPKFE
                     SVFTNDEFTNMLFKEKGVKVIVPPLHRRHELSGTAIRNRIVNDLEWLNLVSPQTAVVI
                     DDIAGVQRIKKLSLLDPHFDG"
     gene            2974..3753
                     /gene="sufC"
                     /locus_tag="VFI64_01760"
     CDS             2974..3753
                     /gene="sufC"
                     /locus_tag="VFI64_01760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HET7242044.1"
                     /translation="MPFLEIHGLSANIDGKEILNNLELNVDRGEVHAIMGPNGSGKST
                     LANVIMGHPKYTVTSGNVLVSGQDILGLSTDERAKKGIFLGFQYPTEISGVGYSHFLR
                     NAYNILNKSLGSQQKDREVFLTVREFHEYLKKNLGDVGLDPAFLGRYLNEGFSGGEKK
                     RSEVMQMLVLKPMIAILDEPDSGLDIDAVKAVAEAINQLINTGAGIVVITHYARILRY
                     LAKLDNIHVMAKGRILKSGGRELAEELEEKGYGWLGLEDAD"
     gene            complement(3888..>4179)
                     /locus_tag="VFI64_01765"
     CDS             complement(3888..>4179)
                     /locus_tag="VFI64_01765"
                     /inference="COORDINATES: protein motif:HMM:NF013188.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HET7242045.1"
                     /translation="PIFILLMAVAVLSKVGGGYIGSRLSGFSKDESLAIAYLMNGRGM
                     VELVIASIGFAAGLIDLTLFSIAVVIGFITTIMAPVFSRPYVTKVRSKVLTK"
BASE COUNT         1357 a          781 c          842 g         1199 t
ORIGIN      
        1 attatagagg atgaagagta cgaaaggttc aacaagcaaa tgaaaatcct tgtcctagat
       61 accgtgatac ctagtcttgc tgaatatgaa gatgttctta ttacccggga ggaatccaag
      121 atatatagac agcttgacaa ggtcttgggt caggcggtca ttgaaacact agaatcccaa
      181 gaggaaatag aaggttatga aatagtagaa acacgcaatg ccaatttaag ttccggtgat
      241 acgtcctcta ttcccgcaga agttccatca atcaaggaat caattgattt agaaaacgaa
      301 tattctgata taaaacgtca tggaacatca gcagtaggaa gcgatgattt tgggttggaa
      361 aaatcccgcc agaaatatga aattagcact gtgcctgcag aagtacaagc cgctagtgga
      421 attattccaa gcggacaaac aagtacattt gcagagcaga caacagaaca tccaacagat
      481 catattgcga caaccaaaat taggaaacct attcttaaga agacgtttgt acttaaaaaa
      541 gtaggataca aagtaattcc ttacgaggat gaatctgatt caagatatag ttttgtaaac
      601 gagaatgttg tttttgtaaa taaagcaaat ccgacataca aagcagaatc ttctaggggc
      661 gatgagttcc ttctcagaca tataatgaat atagtagcac aggcgatagc ggaagcaaga
      721 catcctgaag gaaaggaagc tctggagctt caaaacagac tcatttcaga agctattaga
      781 attcacgatg gcttgtctag aagtggctag cgtaaaattc acgctattgg tctggattac
      841 accaataata caattattgg attgaaatcg gagcggcgat ttttctgtca aactttaatt
      901 tcttatttat tgaaatgata gaaaggacta aatctgacta tctttacttc taacctgaat
      961 aagtatggct tttcaattta tgcctggagc gacagcaatt ggtataacgt gtggcgatgg
     1021 gattgttctc gcagcagaaa aacgtgtttc ttacgggaat tttgtagtga ataaaaatac
     1081 aaaaaaggtg tttgccatta cacacaatgt tgctgcagct tgcgctggca tggtagctga
     1141 tatgcaggta ttggtgagac aagtgacggc attgtcaaga attaggaagc ttgaaattcg
     1201 acgcgatgtt gcgacaaact ctattgctaa gctaatgtcg gtaattatgt tcgaaagaag
     1261 atatttcccc cttttgactc aggtagtagt tggaggcacc gatccatcgc cccagattta
     1321 tacactggat ccgttgggtt ctcttcttcc tgatgattac gctgcggttg gcacaggggc
     1381 agaaatggct cttggagtgt tagactctga atataaaaaa gatatttcaa tagaggtcgc
     1441 aaggaaccta gccgttaagg caataaaatc atcaattcaa cgcgattccg caagtggcga
     1501 tggtatcgac ttagtaatca taacggataa aggcattcag gaagatacca taaaattata
     1561 aatcttataa taccaatcac aacccgacgg ccaagagata tagtagcatc attatagcgt
     1621 aggctacaac cttgtttctt tctttagatt ccagaagata tctcctacat aatgaagatt
     1681 gttaatcaca ggtccttttt ccaaattcat catcgtttga gcatcaactc ttgaataacc
     1741 tattgccaat gacttattgt gaacttgatc cttcaccaca acaatttccg actcaccaaa
     1801 gccatcggca tgtgtaatcc caggcctcat aacgttagca ccattgcaaa taaaccccac
     1861 tgcgcccatg tcaacaatga cataaggaaa atgacttaag agatcctttt caaccaaatg
     1921 aggaactatc aaattatcct ttgtttgaac aatggtaatt ccttcgccaa ccagaagcct
     1981 accagtcttt tcagtttcga ttgcattcaa gctctttata ttacaaataa ttgattttgg
     2041 ccaattctta ctaatacgtc ccgcaatgtc acggatttct ctttttgata gtgtatgtgc
     2101 cttcaatgac cattatcata atcttgctcg ttattatcca tctcgtttgt acttggcatc
     2161 tcaggatgaa ggtagaaata ttatccatcg aagtgcgggt caagtaatga gagttttttt
     2221 atgcgctgta caccagcaat atcgtcaatt actacagcag tctgaggaga aacgagattt
     2281 agccattcta aatcattcac tattctattc ctaattgccg ttcccgaaag ttcatgacga
     2341 cgatgaaggg gaggtactat cactttaact cccttttcct tgaaaagcat attagtgaat
     2401 tcatcatttg taaatacaga ctcaaacttt ggaacagaat tgcttatttg tgctgtccac
     2461 agagaatgga tatttatgtc cggtatagga ataataaata atctcttttg atcaaggtca
     2521 acatctgcat ttagagattc ctttatcatg agaattcttt caccagaagt aaatgggttt
     2581 cgggcttcaa agctcttttg agaactcccg attacaatta caagactttc gacttggctt
     2641 aaagcaaaat caatagatgc cttgtgtccc aaatgaaatg gttgaaatct accaataaaa
     2701 aggccccttg acaatactct tttcaaataa ttttaacgac aatttaaagc attttatgtt
     2761 cctatttcca aagtttaaaa atttgtaaga aagcgaataa cagctcatct tgcagcacct
     2821 ttaacgtatt gcacgaacaa tccaatgtca aatgtgccta atcgaagaaa cattcatgat
     2881 taataatttc aaaggtaatc gtcaaatctt gaaattctac tggtaattgc aactccgtag
     2941 tactttatat tatgttattc tcaaatacga tttatgcctt ttttagaaat tcatggttta
     3001 tctgctaaca tcgatggtaa ggagattcta aataacctcg aattaaatgt ggacagggga
     3061 gaggtccacg ctattatggg gcctaacgga tctggcaaaa gcacgctggc aaatgtgata
     3121 atgggacatc caaaatacac cgtaacatcg ggaaatgtat tggtttctgg acaagatatt
     3181 ctcggtttaa gtactgatga aagggcaaag aagggtatct tcttgggctt ccaatatcct
     3241 acagaaattt ctggcgtagg atatagtcat ttcttaagaa acgcatacaa catattaaat
     3301 aaaagccttg gttcacaaca gaaagataga gaggtattct taacagttag ggaatttcac
     3361 gaatacttga agaaaaattt gggtgatgta ggattggatc ctgcatttct tgggaggtat
     3421 ttgaacgaag gcttttctgg cggggagaag aagcgatcag aagtcatgca aatgttggtt
     3481 ttgaaaccca tgatagccat tttggatgaa cctgattcag gtttagacat agatgcagta
     3541 aaagctgtgg cggaagcaat aaatcagttg ataaatacag gagcaggtat tgtcgtaata
     3601 acccattacg ccagaatttt gcgctattta gccaagcttg acaatataca tgttatggct
     3661 aaaggccgaa tattgaaatc tggcgggaga gagcttgcag aagaactcga agaaaagggt
     3721 tacggttggc tgggtctcga ggatgcggat taaggctaag cacgaataca gtacaagagt
     3781 tatcacctga tttgcagcta tcaagacaat aacaggaaac gttactgcaa ttgcggatat
     3841 accgcagaaa tgatttacgg ttgcatacat catttttcca gagtgtgtca tttggtcaaa
     3901 actttggatc gtacctttgt gacgtacggc cgggagaata caggtgccat aattgtagtt
     3961 atgaatccaa tgactactgc tatagagaag agtgtcaaat ctataagacc cgcagcaaag
     4021 ccaatggatg ctattaccag ttccaccatg cctctcccat tcatgagata agcaatagcc
     4081 aggctctcgt ctttcgaaaa tccgcttaat cttgatccta tatatcctcc ccctacttta
     4141 gaaagtactg caacagccat tagcaagatg aaaattggt
//
LOCUS       DASSIK010000092         2911 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_811311, whole genome shotgun sequence.
ACCESSION   DASSIK010000092 DASSIK010000000
VERSION     DASSIK010000092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2911)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2911)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2911
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_811311"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..952
                     /locus_tag="VFI64_01770"
     CDS             <1..952
                     /locus_tag="VFI64_01770"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HET7242046.1"
                     /translation="KISVNGNTINNWASILEIGVFGDPNNIPIPTPTPPPTPPPSDST
                     LNIAAAGDWGCSSQAQSTLDNIVQNTPEVVLALGDLSYKDTPDCWLKLISPIKSITKF
                     SMGNHEEDEGSPSSLPTSYLDKFGLGTSYYSFNYRNIHFLMLNSEIAFNSNSPQYSFA
                     KNDLAIASADAAIKWIIVGFHTPVYTSPSKHPPNVPFRDTYHPLFDKYDVDLVLQAHN
                     HNYQRSYPMTFNDAKSSEPLISSSQKNDYKDPAGEINLVVGTAGRSLYSLNGKASFNV
                     DQFEEYGFLNLEISNDGKILKGKFYSDKDGSIKDQFTITK"
     gene            complement(1179..2510)
                     /locus_tag="VFI64_01775"
     CDS             complement(1179..2510)
                     /locus_tag="VFI64_01775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HET7242047.1"
                     /translation="MLLISATISLVLTGAEAAALSVTAASVISVEAYDKAKHCTSDLS
                     KHPTSIEYLTYFNCGHVSKESNGQTIRDFTLVVKENQKIPISNEGHIFDGWTYNGTIP
                     GPTMRVTQGDHVRIKVINSPENQHAHSLHLHSIHPAVMDGVSMGGYQGGAIPPGGSFV
                     YEFDAQPYGVFPYHCHVDPIADHINRGLYGMFIIDPKTPRPQMTEFAMLMNGYDLNFD
                     QEGPVTIPAVDEANADQVSKLPVLKISHDHLQGSADAGKDKKLEQAVQIKSDSKDTSV
                     NKETKSSDASKGDQKTDQTSTSNDNEVKKKAETQKNENQGASADEADTARDNEIYTVN
                     GKAFDYMIHPISIQAGKPYRIYLVNMLEFDLVNSLHMHGTMYNYTIAGTEETPNFMTD
                     LVTLAQGDRGIIEFKYDYPGKYMFHAHQTEFTDLGWMGLFDVKPAAPANIT"
BASE COUNT          854 a          607 c          545 g          905 t
ORIGIN      
        1 taagatttct gtaaatggga acactattaa caactgggcc agtattttgg agataggcgt
       61 atttggagat ccaaataata tacctatacc cactcctacc ccacctccga cgccaccgcc
      121 ttctgatagt acgctcaata tcgccgctgc gggtgactgg ggctgctcct ctcaagccca
      181 aagcactttg gataatatcg tgcaaaacac tccagaagtt gttcttgcat taggtgatct
      241 gagttacaaa gatactcccg actgttggtt gaagctgata agcccgataa aatcgataac
      301 caaattcagc atgggaaatc atgaggaaga cgaaggcagt ccttcgtctc tgcccacatc
      361 atatcttgat aaattcggac ttggcacaag ttattactcc tttaattacc gtaacattca
      421 cttcctcatg ttgaattcag aaattgcgtt caactctaac tctccacaat attccttcgc
      481 caagaatgat ttagcaattg catcagctga cgcagctata aaatggatca ttgtgggatt
      541 ccatactcca gtgtacacat cacccagcaa acatccacca aatgtacctt tcagagatac
      601 ttatcatcct ttattcgaca aatatgacgt cgatttggta cttcaggcac acaatcacaa
      661 ttatcagcga tcctatccga tgactttcaa tgatgccaag tcatccgagc ctctgataag
      721 ttcctcacag aagaacgatt acaaagatcc agcaggtgaa atcaatctcg tcgttggaac
      781 tgcaggcaga tcactgtact ctctaaatgg caaggcatca tttaatgttg atcaatttga
      841 agaatacggc tttctcaacc tagaaatatc aaacgatgga aaaatattga agggtaaatt
      901 ttactctgac aaagatggat cgataaagga tcaattcact ataacaaagt agggctttaa
      961 taagccgaaa gcttgtatag tcgaaagtat atagtcacgg aaaaagttca aatgaaaatt
     1021 tgagaataaa atcaccctca ctaactcctc ctaataccaa tctgaaaaac aaccgcttca
     1081 atgttcagag catcagtaca gcattttatc tagtcctgaa gccacaatta cttttatctt
     1141 ttattagctt caactgatct tgctgatagt aatcactatc aggttatgtt tgcaggggcg
     1201 gctggcttga catcaaacag acccatccat cctaagtccg taaattctgt ctgatgggca
     1261 tgaaacatgt actttccggg ataatcgtat ttgaattcga ttattcctct gtcgccttgc
     1321 gccaacgtta ccaggtcagt cataaaattg ggcgtttcct ctgtgccagc tattgtataa
     1381 ttatacatag ttccgtgcat atggagtgaa tttactagat caaattctaa catgtttacc
     1441 aggtatattc tataaggttt gcctgcttga attgaaatag gatgaatcat atagtcaaat
     1501 gctttgccgt tcacagtata aatttcgtta tctcttgctg tatcagcttc atctgctgaa
     1561 gcaccttgat tttcgttttt ctgagtttca gcctttttct tcacttcatt atcattggat
     1621 gtactggtct gatcagtttt ttgatcaccc ttcgatgcat cagaggattt ggtttcctta
     1681 tttacggacg tatctttgct atctgatttt atttgaactg cttgttctaa tttcttgtct
     1741 ttcccggcat cagcactccc ttgcaaatga tcgtgactaa tctttagtac aggcaatttg
     1801 gaaacttggt cggcgttggc ttcgtcaaca gcaggaatag ttacgggtcc ttcttggtcg
     1861 aaattcaaat cataaccgtt cattagcata gcgaattcag tcatttgtgg tctaggagtt
     1921 ttaggatcaa ttataaacat cccgtataag cctctattga tgtgatctgc gattggatct
     1981 acatggcagt ggtatgggaa tacgccatat ggctgggcat caaactcata aacgaagcta
     2041 cctcccgggg gtattgcacc gccctgataa ccacccattg agacaccatc cattacagct
     2101 gggtggatag agtgtaagtg caatgaatga gcatgctgat tttctgggct atttataacc
     2161 ttgattcgaa catgatctcc ttgagttacc ctcatagtgg gacctggtat agtcccatta
     2221 taagtccacc catcaaatat gtgtccttca ttagaaatag gtattttctg gttttctttg
     2281 actactagag tgaaatctct aatagtttgg ccattagact cttttgaaac atgtccgcag
     2341 ttaaagtacg tcaggtattc gatcgatgtc ggatgtttac tgagatcact tgtacaatgt
     2401 ttagctttat catatgcttc gactgaaatg actgatgccg ctgtgactga caaagctgcg
     2461 gcttccgcgc ctgtcaagac caaagatatc gttgcagaaa taagtaacat ataattaata
     2521 gtacgtttgt ttagcacaag ttgttcaata tttaatttat ataaatatgt ttagaaatgt
     2581 taccttggca gataccgaaa ccgcatcgaa aagttacgtt gtatcgaata ataacttaga
     2641 tattcgaaat tttcatgaac cgagtctacg aacttcttaa tagccataat atgctaacgt
     2701 cattggaatt accccctatt tggacatgct aataaaaaat gaatacgttc aatttgttat
     2761 ttcttcaggc agaacaaatc tgcaatgaaa ctctttcaag gggacagtta cagacatcta
     2821 aagcagttgg aaatttgggc aaaaaaagtt agctctatga tcataagtta actctaggtt
     2881 atatagtgat tccagtcctt gctggtatgg g
//
LOCUS       DASSIK010000093         2025 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_611113, whole genome shotgun sequence.
ACCESSION   DASSIK010000093 DASSIK010000000
VERSION     DASSIK010000093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2025
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_611113"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            170..1384
                     /locus_tag="VFI64_01780"
     CDS             170..1384
                     /locus_tag="VFI64_01780"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase family glycosylhydrolase"
                     /protein_id="HET7242048.1"
                     /translation="MKHIFNIPVIIFLIVILCGNVSAISNAQSTPMSNQEPLNGVVMK
                     GIYVNLKQNNIKIPSAPPNYIENSFKMISEAGFNHVRFLFYWEAYERDPDSFMKEIES
                     VASAADKWGIKVIYDNHQWHTSSWLEKLGTGFPWSLFENNLKYIKDGGGNTQHPIAKL
                     FWSDWWNRSVKDNQGRDGWNLMADFLKKIVNMVDTHPSTTGYEILSEPHVSTVDEWSK
                     IGKFNTFMVGELRNATQKTIAYSMNVPVDLNSPINITPENLAKMIPSDKQNVVFKISV
                     YGVPSRDAYQKERFDTFLKTRNLTGIPLYVGEWNNVVRTPGEGGVFTINPNASQLTED
                     DAAKILDEFKNASVWGTAFWKWDYKSVDISSFNLITVSNGMLLPTKYFDILKNAVSSI
                     YGSNKNYTSITR"
BASE COUNT          667 a          345 c          403 g          610 t
ORIGIN      
        1 ttcaaacttt gtctgtaata ttctaaatca ttttcttgca cagttcaagg agacagcttc
       61 acaaaactga ttacttagac ttttgatctg aaatagacca aagcctattt ccttacagtc
      121 atctcctatc gtaatacata ttaaatctat cagagcctta ggattgtcga tgaagcatat
      181 ctttaacata ccagtaatta tatttttgat cgtaattctt tgtggtaacg tttcagctat
      241 ctcgaatgca cagtcgactc ccatgagcaa tcaagagccg ttgaatggtg tagttatgaa
      301 aggtatatac gtgaatctaa aacagaataa tatcaaaatc ccttccgcac cacccaatta
      361 cattgagaat agtttcaaga tgatctctga agcaggattc aatcacgtca gatttttatt
      421 ctactgggag gcatacgaga gagatcctga ttctttcatg aaggaaatag agtcagttgc
      481 tagcgctgca gacaaatggg ggattaaagt aatttacgac aatcatcagt ggcacacatc
      541 atcgtggctt gagaaactgg gcacgggatt cccatggtcg ctttttgaaa acaatttgaa
      601 gtacattaaa gatggtggag gtaatactca acatcccatc gcaaaactgt tctggagtga
      661 ttggtggaat aggtccgtca aggataacca aggaagagat ggatggaacc taatggcaga
      721 ttttcttaag aagattgtta acatggtaga tactcatcct agtacgacag gttacgaaat
      781 cctcagtgaa ccccatgtta gcactgtaga cgagtggtct aagataggca agttcaatac
      841 attcatggtt ggagaactaa gaaatgcgac tcaaaaaact atcgcctata gtatgaatgt
      901 accagttgac cttaatagcc caataaatat tacaccagaa aatttagcaa agatgattcc
      961 ctcagataag cagaatgttg tattcaaaat aagtgtatat ggagttccca gcagagatgc
     1021 gtaccagaaa gaaagatttg ataccttttt gaaaacaaga aacttaactg gcatacctct
     1081 gtacgtcgga gaatggaata atgtagtgag aacacccgga gaaggaggag tattcacaat
     1141 taatcctaat gcaagtcagc tgaccgaaga tgatgcagca aagattttgg acgaatttaa
     1201 gaatgctagc gtatggggca ctgctttctg gaagtgggat tataagagtg tagatatttc
     1261 tagcttcaat cttataactg tcagtaatgg aatgttgtta ccgacaaaat actttgacat
     1321 acttaagaat gcagtatcaa gtatttatgg aagtaataaa aattatacgt ccataactcg
     1381 gtaaaaaatt cgtacatacg tctcattcgt tagtccatgc cagatcgaaa tgatctaagc
     1441 aatcgagagc agtctaaggt ctgatattga aggtatttgt gcagctcgtt ttaagcaaca
     1501 tgtaacaagt cgatttctta tcattttagg acgtccgtat gttgtaaatt aattaatttg
     1561 ctccgttcat ccatgggaat attattggac aagtggtgag gtaaaatcaa atcaaagaaa
     1621 tatggacctt atttccttta tgaaattttt ttgaaccttg taattgctga ttggattgct
     1681 gatttgtgct gaagactagt ttcgtaaatg ttatttcttt ttcagagtta gatctatgct
     1741 cgttgttgca aatcgctatt taaaacgatt gaagttacca tataaaatcg ccaattaggt
     1801 gagaattctc tagtttagtc gtgttctcgc ctctaataaa tcgggtttcg gtcttctctc
     1861 atatttaagt cgtgataaaa cctaatatat ctaaatgttg tatgagaact aagcaaaaaa
     1921 caattgagcg tcccttggac atccctcaag aaaaggaagc agagtgaaat atacgatgaa
     1981 ctgaccttac agagtttcat gcgatattat ggttttcaaa ctaga
//
LOCUS       DASSIK010000094         6667 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_611275, whole genome shotgun sequence.
ACCESSION   DASSIK010000094 DASSIK010000000
VERSION     DASSIK010000094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6667)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6667)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6667
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_611275"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1343
                     /gene="nrdD"
                     /locus_tag="VFI64_01785"
     CDS             <1..1343
                     /gene="nrdD"
                     /locus_tag="VFI64_01785"
                     /EC_number="1.1.98.6"
                     /inference="COORDINATES: protein motif:HMM:NF024984.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008998 - ribonucleoside-triphosphate
                     reductase activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HET7242049.1"
                     /translation="NSGLWGLIPDTIFYDSKDLVENGLDSKGKYLNVSRILPIKKLED
                     LTTTFPRMVSLLSREAYGEVVFDNLIGSIFNKAQYNHKEVESLFTATLLASSIARSYL
                     PGGYPVVTITIPADDLESNIVAALLNGYRRYVENTPVPRIGVQITCQDYNSILMHSEV
                     IGSIGLAGGMISVSNKGVRTHTGVLRNASNDESGLVIGLQSLAVNLPRLAYQSNKDET
                     YFRARLALMLKPAVTALAIRKKVISDIIRKGILPTLSQRSQLMQLGKMNLVINLTGAR
                     ESVYNILGHDLDGEEILLKVLRTAADVVADNGRQVNENSISIAMVPDDSAKRLASLDA
                     EKYGKMQQNDERMPEAYSQGMNIPGKDLLENKNSILSSSNMISSLLSGGFSVNVDLTG
                     VSNDDTNAILKAAYDLDFFRLISKHKICSLCGTRCYISQEKCQNCKSPYLSIIY"
     gene            1430..4138
                     /locus_tag="VFI64_01790"
     CDS             1430..4138
                     /locus_tag="VFI64_01790"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobalamin-dependent
                     ribonucleoside-diphosphate reductase"
                     /protein_id="HET7242050.1"
                     /translation="MAGVTEVNNSNEKTILQIRKRDGRIVEFNQNKISNAIYRALIAM
                     GKSEYQLAEKLSNKVIQKMVQQRYGLDNTAMVPSVEDVQDIVESILIEEGLSDTAKAY
                     ILYRHERRKVRDEKMKILNKKDLDEVDKAFDVNSLRVLAARYLLRDNNNEIIEGPKSM
                     FERVAVLVTIPDMLHDTRIFSLAEGISQNIQEAEKYYSKIDDFDMKLKIGDYYLNKYH
                     FEAMIRHYVYLAKGGHMKVSFKELLRIIAEGNMSAFSERIIEYYNLMVSRDFLPNTPT
                     LMNAGAKLGQLSACFVLDMPDDMSKIMKSSTDAAMIFKSGGGVGINYSNLRPEGDIVA
                     STSGVASGPTSFMRIIDTITDVVKQGGKRRGANMGILEAWHPDIEKFVSAKTKPGVFE
                     NFNVSVGIWDDFWQSVVSEDNHKYTLKNPRTHEPIKQIDSHQLLDLIAFSAWKSAEPG
                     VIFFDNINRYNPCLTAKEGPLRATNPCGEQSLYPYESCNLGSINLGNFVKRKADGMFE
                     FDWQRYEQAVRLSTRFLDNVIDMNKYPVEEIDHNTKLTRRIGLGIMGIADLLFMLKVP
                     YNSKEGYDFMNKLAEAISYYSMEESVAIAKTRGPFPLFNKTEYVNGKIPVAGYYEIPK
                     EMHSYDWDSLIEKIKKNGIRNSWTSTIAPTGTLSMIADTSNGVEPIFALVFEKRVTVG
                     RFFYSNRVFENLLKEKGLYSDEILTKIANNYGSVRGLSEIPEWIQNIFVTAIDIHWTD
                     HLMAQAIWQKWISNAIAKTINMPADVNAEDVRASYLLSHELGLKGVTVYRDGSRHEQV
                     LHITGNDKKERNFIVRPSAHVADYIRSNIKQNYVRTQIEKIFKESEAIDELYIHPTTE
                     VKKTISSIATNEFCEDEACPSCKARLIITEGCNMCIECGFSSCGSG"
     gene            4344..5012
                     /locus_tag="VFI64_01795"
     CDS             4344..5012
                     /locus_tag="VFI64_01795"
                     /inference="COORDINATES: protein motif:HMM:TIGR00323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-6"
                     /protein_id="HET7242051.1"
                     /translation="MGIYKYDVYRSPNIGLFVKSNNSILSVPFGFAETKAKKLRDYLD
                     VDKMFYASVSGTRLIGPLTVMNNNGIILPSTASEEELQLFKQESKLNVDRLNSKFTAV
                     GNLISANDNGALVSSLIKAETHQQIRDILGVQVDTLSIAGFVQTGAMVVATNLGAAVH
                     PNASEEEVRMISEILKVDVEPATINGGIPYLSSGIIANSNSVVVGSLTTGPEFIMLSR
                     AFKT"
     gene            complement(5263..6456)
                     /locus_tag="VFI64_01800"
     CDS             complement(5263..6456)
                     /locus_tag="VFI64_01800"
                     /inference="COORDINATES: protein motif:HMM:NF015882.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent malic enzyme"
                     /protein_id="HET7242052.1"
                     /translation="MTLKDDAISLHRILKGKIEIKSKVFTDGALDGKDDTLSLIYTPG
                     VAYVAQEISGNKSLAYEYTSKWNNVAIICDGTRVLGLGNVGPEAALAVMEGKSVLFKV
                     LGGINAIPLCIATQDLEEIIKFAKIVEPNFGAVNIEDIESPKVLKIVERLTRELSIPV
                     FHDDQHGTAVIALAALINALKLVQKSLSDIRITIAGAGSAGYGICKILLTAGCRDILV
                     TDRIGILHPSRKDIENNSYKLEIARRTNPNKVVGNLTDAIRDSDVVIGVSGVAGLFDK
                     NMIRSMRHGPIVFALSNPDPEILPPDAYDAGAKIIATGRSDYSNQVNNALVFPSVMRA
                     LLDLKIKKLTEEMLVSVAQGIAGLVDQVHLSEKYIIPKINDPRILPIVSETLRFAIIN
                     QLKSN"
BASE COUNT         2177 a         1212 c         1352 g         1926 t
ORIGIN      
        1 ccaacagtgg tctttgggga ctcattccag atactatatt ctatgattct aaggatctag
       61 ttgaaaatgg actagattcc aagggcaaat acttgaatgt ttcacggata cttcctatca
      121 aaaaattaga agatttaact acaacctttc caagaatggt atcacttctt tccagagagg
      181 cttatggcga agtagtattt gataatctaa tcggatcaat tttcaacaaa gctcaataca
      241 accataaaga agtagaatca ttattcacag ccacgttgct tgcatcctcg attgccagat
      301 cctatttgcc aggtggatac ccagtagtaa caatcacgat acccgcagac gaccttgaat
      361 ccaatattgt agcagcatta ctgaatggat atcgtagata tgtggagaat acccctgtgc
      421 caagaatagg agttcaaata acatgtcaag attacaattc tattcttatg cattctgaag
      481 tgataggatc tattggactc gcgggaggaa tgatttctgt gtccaacaaa ggagtacgga
      541 ctcacactgg agttttaaga aacgcgagta atgacgaatc aggactcgtt ataggtctgc
      601 aatccctcgc agttaatctt ccaagactgg cttaccaatc gaacaaagat gaaacctact
      661 tcagggcacg gctggcgttg atgttgaaac cagctgtaac cgcacttgct attaggaaga
      721 aagtgatctc cgacataata agaaagggaa ttcttcccac actttcacaa agatcacaat
      781 tgatgcagct cggaaagatg aatcttgtaa ttaatctcac cggtgcacga gaatcagtgt
      841 ataatatttt gggacacgat ttagacggag aagaaatttt actgaaagta ttgcgtacag
      901 cggcagatgt tgtggcagat aatggtagac aggtaaacga gaattcaata agtatagcta
      961 tggtcccgga tgacagcgcg aaacgactag catcccttga cgctgagaaa tatggaaaga
     1021 tgcaacaaaa tgatgaaaga atgccggagg cctattctca aggaatgaat ataccaggca
     1081 aggatttgtt agaaaacaaa aattcgatcc tgtcatcatc taatatgatt agcagtcttc
     1141 taagtggagg tttttcggta aacgtcgacc tcactggtgt ttctaatgac gacacaaatg
     1201 ctatcttgaa agctgcatat gatcttgatt tctttagact catttccaaa cataagatat
     1261 gttccttgtg cggtacaagg tgctatattt ctcaagaaaa atgtcaaaac tgcaaatcgc
     1321 cttatctttc aataatttat tgatgcaaaa tcaaataatt tacacctcta ctatattatt
     1381 ttttagtaag ataacccttt taagctaagc tcttaatgta taggacggga tggccggagt
     1441 tactgaggta aataattcaa atgaaaaaac gattttacaa atacgaaaaa gggatggaag
     1501 gatagttgaa tttaatcaaa ataaaatctc aaacgcaatt tatagagcgt taattgcgat
     1561 gggcaagtcg gagtatcaac tagcagaaaa gttgtcaaac aaggtaattc aaaagatggt
     1621 tcagcaacgt tacggacttg ataacactgc tatggttcca agtgtagaag atgttcaaga
     1681 tattgttgaa tcaatcctaa ttgaagaagg attatcagat accgccaaag cctacattct
     1741 atacagacat gagagacgca aagttagaga cgaaaagatg aagatcctga acaaaaaaga
     1801 tttagatgaa gtagacaagg ccttcgacgt aaactcactg cgggtacttg cagctcgcta
     1861 cctgcttagg gacaataaca acgaaataat tgaagggcca aaatcaatgt ttgaaagagt
     1921 ggccgtccta gtgaccattc ctgatatgtt gcatgatact agaattttct ctttggccga
     1981 gggtatctca caaaatatac aagaagcaga gaaatactat tccaaaattg atgattttga
     2041 catgaagcta aaaattggtg attattacct taataagtat cattttgaag caatgatccg
     2101 tcattatgtt tatctggcca aaggtggaca tatgaaggta agcttcaagg agctccttcg
     2161 aataatagca gaaggtaaca tgtcagcatt ttcagaaagg attatagaat attataatct
     2221 catggtttca agagatttcc taccgaatac tcctactctt atgaatgcgg gagcaaaact
     2281 cggtcaactc tcagcatgtt ttgttctaga tatgccagat gatatgtcaa aaataatgaa
     2341 atcgtcgaca gacgccgcta tgattttcaa atctggaggg ggagtgggaa ttaactattc
     2401 taacttgcgc ccagagggtg atatcgtcgc ttcaacatct ggcgttgctt caggaccaac
     2461 ttccttcatg aggattatag atacaattac agatgtcgta aagcagggcg gaaaaagacg
     2521 tggggcaaac atgggaatac tagaggcatg gcatccagat atagaaaaat tcgtcagtgc
     2581 aaaaacaaaa ccaggagtat ttgagaactt taatgtcagt gtaggcattt gggacgactt
     2641 ctggcaatcg gtagtaagtg aagataatca caagtacaca cttaagaatc ctaggacaca
     2701 cgaaccaata aaacaaatag attcgcatca actattggat ctaatagcct tcagcgcttg
     2761 gaaaagtgct gaaccaggtg ttatcttttt tgataatatt aacaggtaca atccatgtct
     2821 gacagcaaaa gaaggtcctc tccgagcgac aaatccctgt ggtgaacagt cactctatcc
     2881 ttacgaatca tgcaatctgg gatcgataaa cttgggaaat tttgtaaaga gaaaagcaga
     2941 tggtatgttt gaattcgatt ggcaacggta tgaacaggct gtacgtctgt cgacacgatt
     3001 ccttgacaat gtgattgata tgaacaagta tccagttgaa gaaattgatc ataacacgaa
     3061 attaacgaga agaattggat tgggaataat gggaatagca gatctactct ttatgctgaa
     3121 agttccatac aattccaaag aaggatatga tttcatgaac aagttggccg aagccatatc
     3181 atattatagt atggaagaaa gtgttgctat tgccaagaca aggggaccat ttcctttatt
     3241 taataagacg gaatatgtaa acggaaagat acctgtcgca ggatattatg agatacctaa
     3301 agaaatgcat tcgtatgatt gggattctct cattgaaaaa ataaagaaaa atggaataag
     3361 aaattcgtgg acatctacca tagccccgac tggaacattg tcgatgatag ctgacacttc
     3421 aaatggagta gagcctatat ttgctcttgt ttttgaaaaa cgggttacag ttggaagatt
     3481 tttctacagt aacagggtct tcgaaaatct actaaaagag aagggtcttt acagtgatga
     3541 aattctgacc aagattgcca ataattatgg ttctgtaaga ggattgagtg aaattccaga
     3601 atggatacaa aacattttcg ttacagcaat cgatattcat tggactgacc atttgatggc
     3661 tcaggccata tggcaaaaat ggattagtaa tgcaattgcc aaaactatca atatgccagc
     3721 agatgttaat gcagaggatg taagggcctc ctacctattg tcgcatgaac tgggattaaa
     3781 aggagttaca gtctataggg atggctcaag acacgaacag gttcttcata taactgggaa
     3841 tgacaagaag gaaaggaact ttattgttag acccagtgcc catgttgctg actacatacg
     3901 atcaaatatt aaacaaaact atgtcagaac acagattgaa aagattttca aagagtcaga
     3961 ggcaatcgat gagttatata tccaccctac gaccgaagtg aagaagacaa tatcatccat
     4021 cgcaacaaat gaattttgcg aagatgaagc ttgtccatcc tgtaaagcga gattaattat
     4081 tactgagggc tgtaatatgt gtattgagtg tggtttcagt agctgcggct caggatgagt
     4141 gctaaaagca ctcctttgtt cctcccccta gaaacataca taatttttta atgcacatga
     4201 attcagtacc ccccttaagt agtcgagtat tgcatatagt tgacagatcc atttgatggc
     4261 tcttaagatg tgtatagtga gtattagcga tgtgtggggt tatcccaata agttcatatg
     4321 cactgtgctg ggagttttaa tgattgggga tttacaaata tgatgtctac agaagtccaa
     4381 atattggatt gttcgtaaaa tcaaacaatt caatattatc tgttccattt ggctttgcag
     4441 aaacaaaggc caagaaactc agggattatc tagatgtaga caaaatgttt tatgcttctg
     4501 tatcaggaac taggttaatt ggtcctctaa ctgtgatgaa taataacggc atcatcctcc
     4561 cttccacagc ttctgaagag gaattgcaac tttttaaaca agaaagcaaa ttaaatgtag
     4621 accgcttgaa ttccaagttc acggcagtcg gaaatttgat ttcggcgaat gacaatggtg
     4681 cgcttgtgtc cagcttgatt aaagcagaaa ctcatcaaca gataagggat attctagggg
     4741 ttcaagttga tactttgtcg atagcaggat ttgtgcaaac aggagctatg gtcgttgcta
     4801 caaatctggg agctgctgtc catccgaatg caagtgagga agaagttcgc atgatctctg
     4861 aaatactaaa ggttgatgtt gaacctgcga ctatcaatgg cggaatccca tacctttcat
     4921 cagggatcat agccaattca aattctgtag tagtaggaag tctgactaca ggtccggaat
     4981 ttataatgct aagcagagct ttcaaaacgt aatttgtatt aaccggtagg taaaggagtt
     5041 aaagaatcaa ctaattgata agatccacat taatcagcta taaatttcta ttaaaatcaa
     5101 tactacccga aaatggtcac tgctcatgtc tttgtaatga tagttactaa agaaatatga
     5161 aaaatcacta actattagta aagcaatagt tatatttact cataattgat aacgatatgg
     5221 tttaaggtaa tattggttac gattatattg attaaggttt cgttagttag acttaagctg
     5281 atttattatg gcaaatctga gagtttcact aacaattgga agaattcgag ggtcgtttat
     5341 cttaggtata atatattttt cactcaaatg aacctggtct actaaccccg caatgccctg
     5401 agctactgat acaagcattt cttctgtcag ttttttgatc ttaagatcca gcagtgctcg
     5461 cattaccgaa ggaaatacaa gtgcattatt tacttgattg ctataatccg atcttccggt
     5521 agcaataatc ttggctccgg catcatatgc gtcaggtggc agaatttcag gatccggatt
     5581 gctgagagca aaaactatag gaccatgcct catcgaccta atcatgttct tatcaaaaag
     5641 accagcaacc cccgaaaccc caattactac atctgaatct ctaattgcat cagttaagtt
     5701 tcctacaact ttgttaggat ttgtcctccg tgcgatttca agcttgtatg aattattttc
     5761 aatatccttc cttgaagggt gcaagatgcc tatcctgtcg gtaactaaaa tatctcggca
     5821 acctgccgta aggagaatct tacatattcc ataaccggca gaacctgctc cagctatagt
     5881 tattctgatg tcgcttagac tcttctgcac gagtttaaga gcatttatca atgcagcaag
     5941 agcaattaca gcagtaccat gttgatcatc atggaagact ggaattgata actcacgagt
     6001 aagccgttcg actattttga gcactttggg tgattctata tcctctatat tcacagctcc
     6061 aaagttaggt tctacaattt ttgcgaattt tatgatttct tccaaatcct gagtggcaat
     6121 acacaaaggt attgcattta tgccgccaag cactttgaat agcactgatt ttccttccat
     6181 cacggctaag gctgcttcgg gccctacatt tccaagacct aatactctag taccatcgca
     6241 aatgatggca acattattcc atttggatgt atattcgtag gctagggatt tgtttccact
     6301 tatttcttgg gcaacatatg caactcctgg agtataaata agacttaacg tatcatcttt
     6361 cccatccaat gcgccgtcag tgaagacttt acttttaatt tctatcttcc ctttgagaat
     6421 tctgtgcaaa ctgatggcgt cgtcttttaa tgtcatttac ttttattgat gacagtggga
     6481 aaatatctgt attgctactg gcattaatca taactcgaca aaattagacg cttgaaattg
     6541 ttctgcgggt atctcatctt tgcatggtct attttttcaa tagggctcgc aaaatcgggg
     6601 tcttttaatc cgttctgatc caaattattc atgatacata agccaaattg ggaactcgaa
     6661 gtatata
//
LOCUS       DASSIK010000095         3195 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_18875, whole genome shotgun sequence.
ACCESSION   DASSIK010000095 DASSIK010000000
VERSION     DASSIK010000095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3195)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3195)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3195
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_18875"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            239..1363
                     /locus_tag="VFI64_01805"
     CDS             239..1363
                     /locus_tag="VFI64_01805"
                     /EC_number="1.1.5.-"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016901 - oxidoreductase activity, acting
                     on the CH-OH group of donors, quinone or similar compound
                     as acceptor [Evidence IEA];
                     GO_function: GO:0070968 - pyrroloquinoline quinone binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HET7242053.1"
                     /translation="MDKKYLRKIILPIIAVIVLSIVTILRSPSDTTIPLPLPNPISST
                     NVNDTKGIAIMADKLQTPWSIAFSENGKGFFTERSGTIKEINANGKMLKDPLAYIRVD
                     QIGEGGLLGIALHPNFTSNHKMYIYHTYSNYSGTFNKVLMLLEKQDKIIDSETIFDGI
                     PGGTFHNGGRLKFGPDSKLYVSTGDASKPELAQDKNSLAGKILRINDDGSIPQDNPFP
                     GSPVYAYGFRNVQGMTWNPETKVMYATEHGSTGNDEIDIVRPGSNYGWPNEECSEGKA
                     GTAPIICFNPSIAPSGITFVKSNKLGYKDDLIVATLKGSHLRSINLKTGEQNNILVGY
                     GRLRDVVEGPNGFLYVLTSNTDGRGIPQETDDKILRIFKP"
     gene            1377..2621
                     /locus_tag="VFI64_01810"
     CDS             1377..2621
                     /locus_tag="VFI64_01810"
                     /EC_number="1.1.1.88"
                     /inference="COORDINATES: protein motif:HMM:TIGR00532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004420 - hydroxymethylglutaryl-CoA
                     reductase (NADPH) activity [Evidence IEA];
                     GO_process: GO:0016054 - organic acid catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA reductase,
                     degradative"
                     /protein_id="HET7242054.1"
                     /translation="MEKKFRKMNLDERLEELRSKILLTEAEVSAIKNPLAVTKFEDLS
                     RMIENAIGVYPIPLGIATNFVINSKKYLIPMATEEPSVIAAASYAAKLAGLNGGFSCK
                     MDKSIMRGQIQIISVKNMHIAQENISENKEDLLKTANANARTIKAIDIKTKVLHDKNF
                     SFGDPMLVVEVIIDTKNAMGANAVNSMCELLAPKIERITQGKAVLKILSNYATERIAT
                     CETTIRKRDLGGDQTVDRMLHGFAFAYLDPYRAVTHNKGIMNGVDAVALATGQDFRAI
                     EAAAHAYASRDGNYRPLSTFYADTNGDLACKIEMPLAVGTVGGIASVYPMAKIGLKTL
                     QASSAQELGMVIVAVGLAQNIAALRALADEGIQKGHMKLHSRNIAISAGATGPLIDLV
                     AEKMSNQSNISIENARRILDEA"
     gene            2845..>3195
                     /gene="hisG"
                     /locus_tag="VFI64_01815"
     CDS             2845..>3195
                     /gene="hisG"
                     /locus_tag="VFI64_01815"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HET7242055.1"
                     /translation="MATVKFAVPKGSIEEATFKILEEAWQKVTGRGRTYRVKLSDPEI
                     DVKILRPQEIPTYVQEGFYDIGITGKDWIREANADVKLLLDLEYGHVRQVIAVPENFQ
                     ANNVTELIEDFAKQK"
BASE COUNT         1079 a          593 c          680 g          843 t
ORIGIN      
        1 ttgatgccgc tgtgtgattc aactagtttc cgagaaaaca acatgccggc atacttgtca
       61 ttctctgttg taaccggtat ttgttcaagc ctgtgttcaa ccataatact aacggctttc
      121 gaaacgggat cttcatcgtg caaggaaaat ttaggtttat atgcgatatc taacactctc
      181 ataagacaca aagatggacg ctatcattaa ttaaaaacct tgtctgacta aataataaat
      241 ggacaagaaa tatcttcgga aaatcatctt gccaatcata gccgtaatag tattaagcat
      301 tgtcacgatt ctaagaagtc cctcagacac cactattccc cttcctttac ccaacccgat
      361 ttcatcaaca aatgtgaacg ataccaaagg aattgcgatt atggcagata aattacaaac
      421 accctggtct attgcttttt ctgaaaatgg aaaaggattt tttaccgaac gtagtgggac
      481 aataaaagaa atcaatgcaa atggtaaaat gctgaaagac ccccttgcat acattagagt
      541 tgatcaaatt ggcgagggtg ggttattggg aatagcactt catccaaatt ttacctcaaa
      601 tcataaaatg tatatttatc acacatattc taactacagt ggcactttca acaaggttct
      661 aatgctttta gagaaacagg acaaaataat tgattctgag acgatatttg atgggatccc
      721 aggtggaaca tttcataatg gtggcaggct aaagtttggt cctgacagta aattatacgt
      781 atcaactggt gatgcgtcta agccggagct cgctcaagac aagaattcat tggcaggaaa
      841 gattctcaga ataaacgacg acggatccat tcctcaagat aacccttttc caggatcacc
      901 tgtttacgca tatggcttta ggaacgtcca gggaatgacg tggaatcctg aaacaaaagt
      961 aatgtatgca acggaacatg gatctactgg caatgacgaa attgatatcg ttcgtcctgg
     1021 ttcgaattat ggttggccaa atgaagaatg ttctgaggga aaagcaggaa cagctcccat
     1081 aatatgcttc aacccatcaa tagccccaag tggcattacg ttcgtcaagt caaacaaact
     1141 agggtacaaa gacgacctta tcgttgcaac attgaagggt tcacacctcc gttcgatcaa
     1201 tcttaaaact ggtgaacaga acaatatctt ggtaggttat ggcagattga gagacgtagt
     1261 cgaaggaccc aatggatttc tttacgtcct aaccagtaac acagatggaa gaggcattcc
     1321 acaggaaact gacgacaaaa ttttaagaat cttcaaaccc tgaatcagtg tagaagatgg
     1381 aaaaaaaatt tcgaaagatg aatctggacg aaaggctcga agaactccgt tctaagatac
     1441 tgcttactga ggctgaggtt tcagctatca agaatccatt agctgttacg aagtttgaag
     1501 acttaagcag aatgatagaa aatgcaatag gcgtttatcc cattcctctt ggcattgcaa
     1561 ctaattttgt tataaatagc aagaagtatt tgattcccat ggcaacagaa gaaccttcag
     1621 taatagctgc tgcgagttat gccgcgaagt tagcaggttt gaacggaggc ttcagttgca
     1681 agatggacaa atccatcatg aggggacaaa ttcaaataat ttcagttaag aacatgcata
     1741 ttgcccagga aaacatctca gaaaacaaag aagatttact caagactgcg aatgctaacg
     1801 ctagaaccat aaaggctata gatatcaaga cgaaagtcct gcatgacaag aattttagtt
     1861 ttggcgatcc gatgcttgta gtcgaagtaa taattgatac taaaaatgct atgggcgcaa
     1921 atgctgtaaa ttctatgtgt gaattactag ctccaaagat agaaagaata actcaaggaa
     1981 aagcagtcct aaaaatattg tcaaattacg caacagaacg catcgcgaca tgtgaaacta
     2041 caataagaaa gagagattta ggaggcgacc agactgtgga tagaatgctt catggttttg
     2101 cttttgccta tttggatcca tatcgggcag ttactcataa caagggtata atgaacggcg
     2161 tagatgcagt tgcattggcc accggacagg atttccgtgc aatcgaggcc gcagcacatg
     2221 catatgcgtc tcgagatgga aattaccgac cactttcgac attttacgca gatactaatg
     2281 gtgatctggc ttgtaaaata gagatgcccc ttgcagttgg aactgtcgga ggaatagctt
     2341 cggtttatcc gatggcaaag atcggcctaa aaacgttgca agcttcatcg gctcaagagc
     2401 ttggcatggt aattgtcgca gttggacttg ctcagaatat tgcagccctt agagctctag
     2461 cggatgaagg catacaaaaa ggacacatga aattacattc aagaaatatt gccatttcag
     2521 caggtgcgac tggtccccta atagatcttg ttgcagaaaa gatgtcgaat caatcgaaca
     2581 tatctattga aaatgctagg agaatattag acgaagcttg ataaagtgct caaaagtttt
     2641 agccagtcac agagtaatca gatgtatagg attggtttat ttaattggtg tccatctcgt
     2701 cttttcaatt tttagtctca caataatggt aaaaaaagcc aagttgacca gtatccagac
     2761 cgattattta agtggtggtc ccaacggaat atcagattca atagatatat atcggatatc
     2821 aggaatcatt tatttaccat ctaaatggcc acagtgaaat ttgcggtacc aaaaggtagt
     2881 atcgaagaag cgacattcaa aatactggag gaagcatggc agaaagttac cggacggggt
     2941 agaacgtata gagtgaaact gagcgatcca gaaatcgatg tgaaaattct acgtccgcaa
     3001 gaaataccca cttacgtaca ggaaggattc tatgatattg gaattactgg aaaggattgg
     3061 attagagaag caaatgcgga tgttaaatta ttgcttgatc ttgaatatgg tcatgttaga
     3121 caggtaatag cagttcctga gaattttcaa gctaacaacg taacggaact aattgaggac
     3181 tttgcaaaac aaaaa
//
LOCUS       DASSIK010000096         2339 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1014720, whole genome shotgun sequence.
ACCESSION   DASSIK010000096 DASSIK010000000
VERSION     DASSIK010000096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2339)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2339)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2339
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1014720"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(357..662)
                     /locus_tag="VFI64_01820"
     CDS             complement(357..662)
                     /locus_tag="VFI64_01820"
                     /inference="COORDINATES: protein motif:HMM:NF013224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HET7242056.1"
                     /translation="MSGTLTDSGIFLKILESLFDISRSMPSAFVMISCNFGSAKDVTS
                     ELHDIDGVEQVLIVSGIYDIIVRITVQNKDDLDRLLLRVRRMDEIQSTLTLIIIQSQ"
     gene            complement(853..1161)
                     /locus_tag="VFI64_01825"
     CDS             complement(853..1161)
                     /locus_tag="VFI64_01825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242057.1"
                     /translation="MYFSQVGSVPKVKSIRGVALYDPKDGTIHHMHHVMTMEGCEPRD
                     SALIEKDAITFAIKLGHRTEHLKVLHTPDSINPFAKYRVDTIKLGLIELPKPPEIRKQ
                     "
     gene            complement(1172..1516)
                     /locus_tag="VFI64_01830"
     CDS             complement(1172..1516)
                     /locus_tag="VFI64_01830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242058.1"
                     /translation="MELKGEEVYTGWAYSTGRDLYSETWSVDMPPSTAFVKTYLCDHV
                     LFGENGAVEIGILNIRYHLPDNSDGRVNLPGLEWPDSVKAWFNSNITHFTFAIKVRQC
                     YALMSCSVGYWS"
     gene            2124..>2339
                     /locus_tag="VFI64_01835"
     CDS             2124..>2339
                     /locus_tag="VFI64_01835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242059.1"
                     /translation="MTAGKYFNRAVMALDAPHIGFVVRETPDKIVVFGEKNERYDIPI
                     SEIQHVSKNVLIGLNFSDIAKKYKVDRD"
BASE COUNT          748 a          444 c          449 g          698 t
ORIGIN      
        1 caatccttgc acgtttcatc aaagaaatct ttgtgaacgt tacagaccga caatatcttg
       61 aaatagcata aaataattta aaagatttgc ttcactttta ttgtccgtac cttccattcc
      121 aagacatagt tgcaattcag actagcaata cctggcttca tcaaaatacc gatcagcata
      181 tctctaggag ttatgaattt gagaagttga gcgaggacga taagaattat gagatgatca
      241 tactttatca atcctgttga ttgttgttta aattgtagcc taaaacctat agctaatatc
      301 tcaaatggta atagcaccat gtgctcaata cagtcttgct attcataagt attagtctat
      361 tgactttgta taatgattaa ggtaagggta ctttgaattt cgtccatcct tctaacacgc
      421 agaaggagcc gatctagatc atccttattt tgaacagtta tcctgacaat tatatcgtag
      481 ataccagaga ctatcaaaac ttgttcgaca ccatcaatat catgcaattc tgaagtaacg
      541 tccttcgcag agccaaaatt acatgatatc ataacaaaag cagatggcat gctcctagat
      601 atatcgaata gtgactcaag tattttaaga aatatacctg agtctgttaa ggtccctgac
      661 attgagggat tctaatgatg atcgatattc catccatttg ttggaagtaa ccaaaagact
      721 cattatgttc catgcaagtg ttatttcttt cttgaagaca gtaagtacat attttgtaag
      781 aaacataaaa tttatcgatt atgaataaat agggaattat aaatgtcagc gcttaggtcc
      841 tatcaatttg gtttattgtt ttctaatctc aggtggcttt ggcaactcta ttaaccccag
      901 ttttatcgta tcaacacggt attttgcaaa tggatttatt gaatcaggtg tatgcaatac
      961 cttaagatgc tcagttctgt gtcctaattt tattgcaaaa gttatcgcat ctttttcaat
     1021 tagagctgag tccctaggct cgcaaccttc catagtcata acatgatgca tatgatggat
     1081 tgtcccatcc ttgggatcat atagagcaac tccacgaatc gattttacct tgggaacact
     1141 gcctacctgc gagaagtaca tctctgcttg actagctcca atatcctaca gaacagctca
     1201 ttagcgcgta acattgtctt acctttatgg caaaagtaaa atgggtgata tttgagttaa
     1261 accacgcctt aacagagtca ggccattcta ggccggggag gttgactcgg ccgtcactat
     1321 tgtcaggaag atgatatcgt atgttcaaaa tgcctatctc tacggcaccg ttctcgccaa
     1381 acaaaacgtg atcacataga tatgttttta cgaatgctgt agaaggaggc atatctacag
     1441 accaggtctc ggaataaaga tcgcgaccag tcgaataggc ccatccggta tatacttcct
     1501 ctccctttaa ttccatggat gaccgattag acgacaaact tgctattaag gttagtttgg
     1561 agtccttagt agaagcgttt catcctaaca ttatttaaga tagagcattt tgagtaacaa
     1621 aaacatacat acatataatt caagagaggt tagctaattg ttgatggctt gtggaagagg
     1681 gcaagaagag ctggcttaag aacataaaag gaagttggag agacgttata tgtccatgcg
     1741 gaagtacttt ccattttgat ggttctatag atgctttatt ctcatgggag acgatacata
     1801 ttagacatat gtcatttgac tccgagaacc acgatatgct atccttctac ccaaaagata
     1861 tggtcatttt ttaccattct aagagcgggt acgtagtaga aagacgcaga catactgatg
     1921 atgaaatcca tgatctacaa accgcctgca tttatggaac agccaaactc gcgggcgtat
     1981 aatatttcta cactcatatc atgttacact gtcagaggac tgaagaccac agggaagaca
     2041 ctaacaaaaa catacgtaat aaatgctaaa tccagaacag ggattacgga taaatgcatg
     2101 tgccacaata gctagcatag aacatgacag ctggtaagta cttcaatagg gctgttatgg
     2161 cccttgatgc accacacata ggatttgtag taagagagac gcccgataaa atcgtagtat
     2221 tcggagagaa gaatgaaaga tacgacattc ctatctcaga gattcagcat gtcagcaaga
     2281 atgttttgat aggtcttaat ttttctgata ttgcaaagaa gtataaggtg gaccgtgat
//
LOCUS       DASSIK010000097         2349 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1395180, whole genome shotgun sequence.
ACCESSION   DASSIK010000097 DASSIK010000000
VERSION     DASSIK010000097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2349)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2349)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2349
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1395180"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1386)
                     /locus_tag="VFI64_01840"
     CDS             complement(<1..1386)
                     /locus_tag="VFI64_01840"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HET7242060.1"
                     /translation="MKVIDLAQIPPPLIIGERLNTQGSKKAKAMVLKEDFDGLVTLGR
                     EQVEDGAHCIDVCVATTERSDELYFMKKLVKRLSLEVEAPLVIDSTDPKVIEDAILQI
                     PGKPIINSINLEGDGARFHSLAPLMSKYGVPAIAMCIGPDGMAKTAQEKIDVAKLLYE
                     TGKNYNLKPWQFIFDVLTFTLATGEAEYANSAVETLSGISLIKKEMKGCFTSLGLSNV
                     SFGLPSNARKIVNSVFLHHSIKAGLDAVIINARDIIPMSDIEPAQLKLAEDLIFNKYT
                     NALSDLITYFEGTKASSVNARKKSDLNPDWDYDKKCYFRIVNRLKEGIETDVVGSITN
                     RVLKKLRGETHQYQTVSLLREHTDLAHEAAVETLNDVLLPAMKEVGDKFGAGELILPF
                     VLKSAECMKSAVAELEKYLIKKQGVSKGKLVICTVYGDVHDIGKNLVKTIISNNGYSV
                     FDLGKQVPIALI"
     gene            complement(1469..>2349)
                     /locus_tag="VFI64_01845"
     CDS             complement(1469..>2349)
                     /locus_tag="VFI64_01845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="homocysteine S-methyltransferase family protein"
                     /protein_id="HET7242061.1"
                     /translation="MGTEIQKLDLEASKYPDNMDGFNDGLVMSAPTIIEEIHRSYLRA
                     GSDCIETNTFGSNQLKLEEYGYGDRVIEVNKLAASIAVSVTLEFSDKQRFVIGSMGPS
                     GYLPSSNDPDLGQIELSKIIRAFSLQAEGLIMGGVDALLIETSQDILEVKLAIEGGFQ
                     AIQKTGKKIPIISNVTLDKYGKMLLGTNVQAAYTTVCDMGILAFGLNCSTGPLEMDPS
                     IRWLDEQDELPVLVMPNAGMPENVGGKAIYKMSPSSMASALGDFLRKYKNIRMIGGCC
                     GTTPEHILEFSKVIGQ"
BASE COUNT          626 a          532 c          428 g          763 t
ORIGIN      
        1 aataagtgct atcgggactt gctttcccag atcgaaaacc gagtatccgt tatttgaaat
       61 tattgtcttt accaggttct ttccaatatc atgcacgtct ccataaacag tacaaatgac
      121 caatttacct ttgctgactc cctgtttctt tatcaaatac ttttccagct ctgccaccgc
      181 tgatttcata cactctgcag attttaacac aaatggtaat atcaattccc ctgcgccaaa
      241 tttgtcacct acttccttca tagctggcaa caagacatcg ttcaacgttt cgacagctgc
      301 ctcatgtgca agatcagtat gttctctcag tagtgataca gtctgatact gatgtgtttc
      361 tccacgcagt tttttcaaca ccctattggt tattgatcca accacatcag tttcaattcc
      421 ttccttaaga cgatttacta tacgaaagta acattttttg tcatagtccc agtctgggtt
      481 aaggtctgat ttcttgcgcg cgttaaccga gctcgctttg gtaccttcaa aatatgttat
      541 gaggtctgaa agagcattag tatatttgtt aaaaatcaga tcctctgcta gcttcaactg
      601 tgcgggttcg atatctgaca taggaatgat atccctggcg ttaattatta ctgcgtctag
      661 tcctgccttt attgaatggt gtagaaaaac ggagttgact atttttctcg catttgatgg
      721 caagccaaaa ctgacattac tcaaaccaag actggtaaaa caccctttca tctctttttt
      781 aataagcgat ataccagaaa gtgtttctac ggcagaattt gcatactcag cttccccagt
      841 tgcaagtgta aaggttaata catcaaatat gaattgccaa ggttttaagt tataattctt
      901 gcctgtctca taaagcaatt tcgctacatc gattttttct tgggcagtct tcgccattcc
      961 atcgggtcct atgcacatag ctattgcggg aacaccgtat tttgacatta acggagcaag
     1021 ggagtgaaat ctcgcaccat cgccttcaag gtttatagaa ttgatgattg gtttaccggg
     1081 aatctgcagt atcgcatctt ctatgacttt aggatccgta gaatctatta ctagaggcgc
     1141 ttcaacttca agactaaggc gttttaccag ctttttcatg aaatatagct catcagaccg
     1201 ttctgttgtt gcaacgcaga catcaataca gtgagctccg tcttcgactt gttctctgcc
     1261 aagggttaca agaccatcaa agtcttcttt caggaccatt gctttggctt tctttgaacc
     1321 ctgcgtgttg agtctctctc caattattaa ggggggtgga atctgtgcta ggtcaattac
     1381 cttcattgcg gagctaaccc gagggatctt atgtttcaaa ttcatcaggg gttagaaagt
     1441 gaataatgaa atgttgggat tataagtcct attgtccaat cacctttgaa aattccagta
     1501 tgtgctctgg ggtcgttcca caacaacctc caatcatgcg tatatttttg tacttacgca
     1561 aaaaatcacc aagggctgat gccatgctcg atgggctcat tttataaatg gcctttccac
     1621 caacattttc tggcattcct gcatttggca tgaccaggac aggaagctca tcctgctcat
     1681 caagccaacg tatactcgga tccatctcca gaggtcctgt tgaacaattt aaaccaaatg
     1741 caagtattcc catgtcgcat acggtagtat acgcagcttg aacatttgtt cccagtagca
     1801 tttttccgta tttgtctagg gtaacattag aaattattgg aatttttttc ccagttttct
     1861 ggattgcttg aaatcctccc tcaatggcaa gtttaacttc taggatatct tgacttgttt
     1921 caatgagtaa cgcatcaact ccacccataa tcaatccctc tgcttgaagg gaaaatgctc
     1981 gtatgatttt gcttaactct atttgcccca agtcaggatc attagagctt ggcaaataac
     2041 cactcggacc catggaacca atcacaaatc tttgtttatc gctgaattcg agagttactg
     2101 aaacggcaat tgaagcggcc aatttattta cttctataac cctatcgcca tagccatact
     2161 cttcgagttt taactggttg ctaccgaatg tattagtctc aatacaatct gatccagctc
     2221 tcaaataact tctgtgaatt tcttcaatta ttgtaggggc gctcataact aggccatcat
     2281 tgaagccgtc catattgtca ggatacttgc tagcttctag atccagcttt tggatttcag
     2341 ttcccattg
//
LOCUS       DASSIK010000098         2224 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_513183, whole genome shotgun sequence.
ACCESSION   DASSIK010000098 DASSIK010000000
VERSION     DASSIK010000098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2224)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2224)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2224
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_513183"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..292
                     /locus_tag="VFI64_01850"
     CDS             <1..292
                     /locus_tag="VFI64_01850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242062.1"
                     /translation="TYNIAESAEIPTKITNSVSLKCSGRSLPESIQLKNNMRHFTSFL
                     FARKYFGLDALTTFLTLRYKTRELPYRREHGNLSEKITRLKFLSITNLVQVF"
     gene            368..1255
                     /gene="htpX"
                     /locus_tag="VFI64_01855"
     CDS             368..1255
                     /gene="htpX"
                     /locus_tag="VFI64_01855"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc metalloprotease HtpX"
                     /protein_id="HET7242063.1"
                     /translation="MSTRLKRDFGLSARMILSFIILGILYVLFLSVLHYLGIGYIPLA
                     IIASAMILAQWYFSDKIVLWTSGAKIVSKDDYPKLHEIIERLASKNGIPKPKVAVVNT
                     QVPNAFATGKSPKSSLVAVTSGILNLLDDDELEAVIGHELTHIRSRDILVLTLASVFS
                     TVAWYLAQFGFFGGIQSRNRDSAGTTVIVIVVAVVTWIVSFLIIRAISRYREYAADKG
                     GAAMTGNPDKLADALLKISGKMNNIPTKEIESVQKLNAFFIIPALSGNSIANLFSTHP
                     PVEKRVAKLREMKTGMGQL"
     gene            complement(1402..1917)
                     /locus_tag="VFI64_01860"
     CDS             complement(1402..1917)
                     /locus_tag="VFI64_01860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242064.1"
                     /translation="MNVTSGIIISTILILTLAASVGTILPLISQQSSELVVEDETYTA
                     QKTAISNAGKLPIHQTHQVVTVLPPRTDGKVWVGTVTWASSKPIEVEMWHFYNSSITG
                     VDAAHGKPVLTPYGNNKTIAFTLLKPSSGTSLPSGSTNFAASELSFHTLDGSKFTVAY
                     TVDAVAKKLNH"
BASE COUNT          720 a          414 c          445 g          645 t
ORIGIN      
        1 cacctataac atagctgaat cggccgaaat accaacaaaa atcacaaatt cggtgtcgct
       61 gaaatgtagc ggacgaagtc tgcctgaatc aatacagcta aagaataaca tgcgccattt
      121 cacttctttt ctatttgcca ggaaatattt cgggttggac gctctaacta ctttcctaac
      181 tctccggtac aaaactagag aacttccata tcgacgggag catggaaacc ttagcgagaa
      241 aatcactcgt ctgaaatttc ttagtattac taacctcgtc caagtattct gatatttcca
      301 gattaatact ggacacatta gtttatttaa ggaaaatgat ataatataat caaagaagca
      361 agaatagatg tctaccaggt taaaaagaga ttttggactc agtgctcgaa tgattctgag
      421 tttcataatc ttgggaatac tatatgtctt attcctaagc gtacttcatt atcttggaat
      481 aggatacata ccactcgcga taattgcatc ggcaatgatt cttgcacaat ggtatttctc
      541 tgataagatt gtactgtgga cttctggagc aaagatagta tcaaaggatg attatcctaa
      601 gcttcatgaa ataattgaaa gacttgctag taaaaacgga atcccaaaac caaaagtagc
      661 tgtagttaat actcaggtac ctaatgcctt tgccaccggt aagagtccca agagttctct
      721 agtggcagta acaagcggaa ttttgaattt actggacgat gatgagcttg aagccgtgat
      781 tggacacgaa ttgacccata tcaggagcag agatattcta gtattaacac tagctagcgt
      841 attttctaca gttgcttggt atcttgctca attcggattt tttgggggaa tacaaagtag
      901 aaatagagat agtgcgggta cgacggtaat agtaatagta gttgcagtag taacatggat
      961 tgtcagtttc ctaatcatta gagcaatatc caggtacagg gaatatgcag cagataaagg
     1021 cggagctgcg atgactggaa atccagataa gttggccgac gcgcttctca agataagtgg
     1081 aaagatgaat aatattccaa caaaagagat agagagcgta cagaaattga atgcgttctt
     1141 cattattcct gctctatctg gaaattcaat tgctaatctt ttctccactc atccaccagt
     1201 tgaaaagcgt gttgcgaaac ttcgggagat gaagactggg atggggcagc tataaagcaa
     1261 aaagataagg cagatcggaa tcacagattt attctaaaat ggtacagcaa gatattctat
     1321 tactatgaga gttctgatgc tgatacaact agttattttc ctagacgaat gaaatgccta
     1381 cagaataatg agaaggagaa gttaatgatt taacttcttt gctacagcat ctacagtata
     1441 agctactgtg aactttgacc catccaacgt atggaatgat aattcacttg cagcaaaatt
     1501 tgtgctgcct gacggtaaag acgttccact agacggtttc aacaaagtaa atgctatggt
     1561 cttgttattc ccatatgggg ttaagacggg ctttccatgc gcagcgtcta ctcccgttat
     1621 actagaattg taaaaatgcc acatttctac ttctattggc ttgctcgacg cccaagtcac
     1681 agttccaacc caaacttttc cgtcagttcg tggtggcaat acagttacta cttgatgagt
     1741 ttgatggata ggtaatttcc cagcatttga tatcgctgtc ttttgggcag tataagtttc
     1801 atcctctacc actaattcac ttgactgctg agaaatcaaa ggcaagatag tacctacaga
     1861 tgctgctaag gtcaggataa gaattgttga tataatgatt ccagatgtta cgttcacgga
     1921 gtatcatgag aggtagcgat atataagcac agcatcaaat tctgaagaaa aacagaaaga
     1981 aatagaaaaa atatgattac gataatactg atttaacttc agtttctata gtaccgttgc
     2041 atcgcaagtt aaccatggcc cttaacgtca aatccaaaaa tacagcaaca actcgtccat
     2101 agttgtgatt gcctgcctaa taaaatatct caaaacggat atcttgacgt tttatttcta
     2161 atactagact ccctctccat aagtagagct agttatttta tcttgtctat ggagtagggt
     2221 aatg
//
LOCUS       DASSIK010000099        10152 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_707885, whole genome shotgun sequence.
ACCESSION   DASSIK010000099 DASSIK010000000
VERSION     DASSIK010000099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 10152)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10152)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10152
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_707885"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(411..767)
                     /locus_tag="VFI64_01865"
     CDS             complement(411..767)
                     /locus_tag="VFI64_01865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242065.1"
                     /translation="MVFDSKQTTLDYCQLSFFKKILSDVSANTVKTGKSFELYRNSLE
                     VTEASLEEEIATAIGEHVVIQVINHGGFIPPIIQIQCLFTLDEFSQWIYLRSKDLFSE
                     CVENLLNCRSVEVFKN"
     gene            complement(900..4118)
                     /gene="ileS"
                     /locus_tag="VFI64_01870"
     CDS             complement(900..4118)
                     /gene="ileS"
                     /locus_tag="VFI64_01870"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004822 - isoleucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HET7242066.1"
                     /translation="MEVYTKFDPKKIEGDIRSYLGDVDQASLLNKEMSNVNSVLGYIE
                     GPPTLNGEPHVGHLRGRIIKDMWYRFKTLQKYRVIFRAGWDTQGLPIELQAEKLLGLT
                     GSKSENIKRVGVESIVNACKQLIQTNATKWIEVDHLLGMSFDYERAYWTYKDEYIERE
                     WKYLKKAWEIGILKEWFRVVAYCPSCQTSLSNAEVNQGYKNVEDPSFYYKVKMSEEDA
                     FLIVWTTMPFTLITDELIGVNPDATYVYVNVNDQVWVVGQDRLQSLMNELGIINYESI
                     RTVLGKNLEGRRYIHPLLEMIPGLKRLFDEKSIHFVVAEQFVDVSTGSGLVHLAPANG
                     EEDFEIATKRSIPIFVPIDDKVVFTEEAGQFRGMYVRDADEMVINAMREASAYVKVGK
                     IVHQYPTCWRSGHKIVWLARREYFYMIDKLGQNPLSAASKVEYYFDSPRNRFLEIIKE
                     KVPWCISRERIWGTPLPIWKCNSCGKKEALFSRTEIIGRASELPDGTDFELHRPWIDR
                     IHLKCSHCKDIMSREPFVLDTWHNSGASPYASLSDDEYSQLIPAAFLTEGIDQTRGWA
                     YTLLMENVIMRNTNQAPFHAFLFQGHMLDEKGNKMSKSLGNVIDAKDLLSENSVDLVR
                     FYLLWKASPIDSLNFSLSELVARPYQVLNTLFNLHVYLHQNSQYDNFDTKNMDIENVA
                     KSKLFGIIEEWLISKLQSLITVVTQSFERCRFNEGAKAIEYFIINDLSQVYVPFTRDD
                     LWDDSPNTLERRSVIYSILGHALCQVDILIHPLCPFISNYLHLMFFTTQQSILIESWP
                     KIKDSLINPKVETNVNIAKEIVSLANSARTKAKIKRRWPISRIIVFMKDDDLSKVNDL
                     TEIMKTQMNTDSLEILALPKIKDVYGRLAGLLNYNVVEISAKLKTKRIAPLLKNDLPK
                     ILSSFENADQSKIIKTLISEGKCLIEYEGNDFEILKEDVELSYSPSPGYSMAETDTGD
                     IIVLIETIRNNDLLTKGLVKDLARNIQQLRKEKGYLPTDVLSCAYVSNLNEDELTSLL
                     DFKENLAYLVRVKSVKLSLQPSDTEKYKEVEIDGRKVFVSIE"
     gene            4334..4891
                     /gene="ppa"
                     /locus_tag="VFI64_01875"
     CDS             4334..4891
                     /gene="ppa"
                     /locus_tag="VFI64_01875"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004427 - inorganic diphosphate
                     phosphatase activity [Evidence IEA];
                     GO_process: GO:0006796 - phosphate-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HET7242067.1"
                     /translation="MTEATVLDKPNLPNTIPNNIHVVVEIPKGSNIKYEFDPASGFLS
                     VDRKLYAAMHYPCNYGFIPNTLEDDGDPVDVLVLGDWPVVPMSMIKAVPVGLLFTKDE
                     EGNDSKIISVPNSKIDPRFANIRNIDDIPSYLLDEIKHFFEHYKELEPGKYVKVTGWG
                     DRESASEKISEAIERFKNGNSSKGP"
     gene            complement(4878..6104)
                     /locus_tag="VFI64_01880"
     CDS             complement(4878..6104)
                     /locus_tag="VFI64_01880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HET7242068.1"
                     /translation="MSLAPQELENSASKYAAEAIRLDSEGSRGMAIQAYQRAIEALVK
                     LIQIYPEYKLNKIYMERASAYQNRVKALQMTNGIADVHPEKTDQMFRKTTTYSSNTPA
                     NSTNRKRDAGTESLGAEFDDLVMKDKPHVTWEEVIGLDDAKRAIRESIVYPTKRMDLF
                     PLGWPRGILLYGPPGCGKTLLAAAAAAEIEGYFINVDAASMMSKWLGEAEKNVSKLFN
                     LARRLHDTEGVPVLLFVDEIDSLLGSRNGEIGGEVRVKNQFLTEMDGINDKSKASKLY
                     VIGATNKPWSLEAGFLRRFQKRIYVSLPDQASRIHLFRQYTERLKMEKSLKSEDLAKL
                     TDGYSASDVKDICQSAQLRVVDELFQSGKALEEEANTRSIAPSDFKEILKMRKPSVSI
                     DMMRAYSRWSEQFKAL"
     gene            6945..8144
                     /locus_tag="VFI64_01885"
     CDS             6945..8144
                     /locus_tag="VFI64_01885"
                     /inference="COORDINATES: protein motif:HMM:NF014080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HET7242069.1"
                     /translation="MTHAKTYSSSLEFDIIGNLEEFGLSKYEARAYITLVEKGTLGAS
                     EIAYYSHLPRTKIYTTLKKLEKKGLSTITERKPLTASAVPPEEGFMEIMKLHEKRLKN
                     MKGIVLALKKIENDGRRSSNMEEKKYIILDPFFAEEKIRDLIQDARSSINVMVDSWGL
                     NVVSRCKEALLSAIMRGIKVRLLIGFQCADNPNIHSIPSGLEIRLHQIHDNILTIDTS
                     KVVTIDGTNGKAAVLNSLDIFASSHIRLFEEKWEGAIKVGNLSDLETGILVNALRLTR
                     TLEDKVATQIFDHVARPDSDLAPIVNAIEHAGIRIMQYSINELIRLIDYAMRLFYEGD
                     LRYDMMYNMLVLRSESSEKSLIPWALVIMSYLNKIGNEAKMICDPEKVIGNRVHLKLS
                     NPISNSE"
     gene            complement(8145..8693)
                     /locus_tag="VFI64_01890"
     CDS             complement(8145..8693)
                     /locus_tag="VFI64_01890"
                     /inference="COORDINATES: protein motif:HMM:NF028455.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242070.1"
                     /translation="MQGSASDIFVLDATAFYQGFHLRVSEKCITTDEIINEVSHIRKN
                     ISLMSFLIEGQKISILEPKQESINRVKTMARQIGDSKISGPDISVISLAIEYGGTIVS
                     DDYRVCNLAKVMCVRTWNLASYGIKGIRKWTKVCKECRRQYSSSASSCSICGNSLSVR
                     YRERKFDDGASQKKKSITHIIK"
     gene            complement(8674..9486)
                     /locus_tag="VFI64_01895"
     CDS             complement(8674..9486)
                     /locus_tag="VFI64_01895"
                     /inference="COORDINATES: protein motif:HMM:NF039482.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+)/NADH kinase"
                     /protein_id="HET7242071.1"
                     /translation="MEIRNVAIVTKFNNPVAIDAGRKIAEYFKTRNVQVFSVNNIDRS
                     DVIMVSPEKIRDINLDLVFAVGGDGTTLRTFRMVPNITPVFSINIGGTRGILAEVGHS
                     DIGTQLEAIVKDEYFLDSRIRLQAQIEGKILGPALNDVVITRVNLTRTPSLRISLLSE
                     HVSQRMDGIIISTPTGSTGHSLSLDGPIIHEQVKCLLIHPVAPVNKMPCLIVEPQDIS
                     ITSSNDSKVVIDGQEVFDVKAESPITISRYPFDGMFVRLNKRGIQQVARLGF"
     gene            9619..9692
                     /locus_tag="VFI64_01900"
     tRNA            9619..9692
                     /locus_tag="VFI64_01900"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9653..9655,aa:Ile,seq:gat)
     gene            complement(9761..>10152)
                     /locus_tag="VFI64_01905"
     CDS             complement(9761..>10152)
                     /locus_tag="VFI64_01905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242072.1"
                     /translation="AGSEDSIHFAKIASTLMHLSGWDSTFIGNVEQKIDPFFDIDIQR
                     YILKSYGNRNGLILILIFSFSENTLRFLCNALKSLKARFSGDIRLILFTKEDLYDMAL
                     TLGPDFVSSDFGSLIKWVEHEYKKSYE"
BASE COUNT         3010 a         2092 c         1785 g         3265 t
ORIGIN      
        1 ttcattaaat ttttcgaacc ttccccaagg tctctcctca caatatacgt ccatcctgaa
       61 acgatttgta tatatcaaat ttaatgatta ccttgtgcgt attgtagaaa ttgatgtgag
      121 attctttgtt atcttttaca cattacaaat gtctcccaaa tgtgagacca atcgtcagaa
      181 tgcctcctgc gacggaagca cgaaattaag ggataaattt ctacatatgc ccctttcacg
      241 ataacttatt tattcgaatt aggttacact agtaagtagt tcggatcgag gtaacatttt
      301 ttcgtagtta tttgacactt tggacttgaa ggaccgatca ataactaggg cagcctagtc
      361 tggggaataa atactactta gaaaaccaac tagatattgt aattgcctgt ttaattctta
      421 aaaacttcaa cagatctaca gtttagtagg ttttccacac attcagaaaa tagatctttg
      481 ctcctcaagt aaatccactg tgaaaattca tccaaagtaa aaagacattg tatctggatt
      541 attggtggaa taaacccacc gtgatttata acttggatta caacatgctc cccgatagct
      601 gtagctattt cttcttctag acttgcttca gtaacctcca gtgaattccg atacaattca
      661 aatgatttgc ccgttttaac ggtattagca gatacgtcag ataatatttt cttgaaaaag
      721 ctaagctggc aatagtccaa tgtcgtctgt ttactatcga ataccaaggg cttacctctc
      781 aataaatgat ctttgatgat tttacaattt atacttagat gacaacaaac attgacatta
      841 agttatgaga taataaagta acaccgtctg taaaatttat tctctataga ttattatcac
      901 tattctattg acacgaacac ttttcttcca tcaatttcta cctccttata tttctcagta
      961 tcacttggtt gcaaactcaa tttcactgat tttactctta ctaaataagc tagattctct
     1021 ttgaaatcta gaagagaagt caactcgtct tcattcaagt tcgacacata ggcgcatgat
     1081 aacacatcag tcggcaaata acctttctct tttcttagtt gctgtatatt tctagctaga
     1141 tctttgacca agcctttagt aagtagatca ttgtttctta tagtttctat taagactatg
     1201 atgtctccag tatccgtctc tgccatagaa tatcctggag atggagaata agataactct
     1261 acatcttctt tcaatatctc gaaatcatta ccttcatatt ctatcaagca ttttccttcg
     1321 gatatcaaag tctttatgat tttactttgg tcggcgttct caaaagaact taatatcttg
     1381 ggaagatcgt tctttaaaag tggagcaatt cgctttgtct ttagtttggc tgatatttcc
     1441 actacattgt aattcaatag acctgccaat ctaccataaa catccttgat ttttggtaat
     1501 gccaatatct ccagagaatc tgtgttcatt tgtgttttca taatctccgt aagatcgttc
     1561 acctttgata agtcatcatc tttcataaag actataattc tacttatcgg ccatcttctc
     1621 tttatttttg ctttcgttct tgcagaattt gcaagggaga cgatttcctt cgctatattg
     1681 acatttgttt ccactttagg atttattaat gaatccttta ttttcggcca agactctatc
     1741 aagatagatt gttgggtcgt gaagaacatc aagtgtagat aattactgat aaatgggcat
     1801 agaggatgaa tcaatatatc gacctggcat agggcatgac ccaaaattga gtatattact
     1861 gatcttcgtt ccaaggtatt gggactatca tcccacagat cgtctcttgt aaaaggaaca
     1921 tatacctggc ttagatcgtt tattataaaa tactctattg cctttgcacc ttcattaaat
     1981 ctgcatcttt caaaggactg cgtaactaca gttatgagcg attgtaattt tgaaataagc
     2041 cactcttcaa ttattccaaa taatttactt ttagccacat tttctatgtc catattcttt
     2101 gtgtcaaaat tatcatactg actattttga tgtaaatata catgcaggtt gaacagcgta
     2161 ttcaatactt gatagggtcg tgcgaccagt tcactaagac tgaaattaag ggagtctata
     2221 ggagaagcct tccacaaaag atagaaccgc actaaatcca cagagttttc agacaataga
     2281 tctttagcat ctataacatt tcccaggctc ttgctcattt tgttaccttt ttcatccagc
     2341 atatggcctt gaaagaggaa agcatggaat ggtgcctgat tcgtattccg cataataaca
     2401 ttttccatta atagagtata agcccaccct ctcgtttgat ctattccttc cgttaaaaat
     2461 gcagccggaa tcagctgtga atattcatcg tcacttaggg atgcatatgg agaagcgcca
     2521 ctgttatgcc aggtatcaag cacaaagggt tctcgagaca taatatcctt acaatgagaa
     2581 cacttaagat gtattcgatc tatccatggt cggtgtagtt cgaaatcggt accatcaggg
     2641 agctcactgg ctctgccaat tatttcagtc ctcgagaaca aagcctcttt ttttccacag
     2701 gagttacact tccatatcgg cagaggagtt ccccaaatac gttccctaga aatgcaccaa
     2761 ggaactttct ctttgataat ttccaaaaat ctgtttctgg gggaatcaaa gtagtactca
     2821 actttggatg cagcagacaa tggattttgg ccaagcttat ctatcatgta aaaatattct
     2881 cgacgtgcca accaaacgat tttgtggcca gatctccagc atgtcggata ctggtgtact
     2941 atctttccta ctttgacata cgcagaagct tccctcatgg cattaatgac catttcatcg
     3001 gcatctctta catacatacc tcgaaactga cctgcctctt cagtaaaaac tactttatcg
     3061 tctataggaa cgaaaattgg aatagagcgc ttggttgcta tttcgaaatc ctcttcccca
     3121 tttgccgggg ccaaatgcac taatccgctt ccagtgctta catctacaaa ttgttctgcg
     3181 acaacaaaat ggatgctctt ttcatcgaat agcctcttta atccagggat catttccaaa
     3241 agcggatgga tgtaccttct tccttcgaga ttcttgccca agacagtacg tatcgattca
     3301 taatttatta ttccaagttc attcatgagt gattgcaaac gatcctgtcc tacgacccaa
     3361 acttggtcat taacattcac gtagacgtac gttgcgtcag gatttacacc aattaattcg
     3421 tcagtaatta aggtgaatgg catcgttgtc cagacaatca aaaacgcgtc ttcttctgac
     3481 atttttacct tataataaaa cgacggatcc tccacattct tgtaaccttg attgacttcg
     3541 gcattgctaa gagaagtctg acaagatgga caatatgcta ccaccctgaa ccactccttc
     3601 agaatgccaa tttcccatgc cttcttcagg tacttccact ctctttctat atactcatct
     3661 ttatacgtcc agtatgctct ctcgtagtca aaagacatcc cgaggagatg atctacttcg
     3721 atccatttag ttgcgtttgt ctgtatcaat tgcttacagg catttactat actctcaaca
     3781 ccaactctct tgatgttttc tgatttgctg cctgtgaggc ctagaagttt ttctgcctgc
     3841 aactcaatcg ggagaccctg ggtatcccaa cctgcgcgaa aaatcactct atacttttgt
     3901 aaagttttaa acctatacca catatctttg ataattctac ctctcaggtg ccctacgtgg
     3961 ggttccccgt ttagagtcgg aggaccttct atgtaaccca gaacagaatt tacattcgac
     4021 atttctttat taagtagaga ggcttgatcg acatcaccca ggtacgacct aatatcacct
     4081 tctatctttt ttggatcaaa cttggtatag acttccatct agtgcgctag agccataaac
     4141 ggatccacaa tttttatttg taccgattgt cgggataagc atgaaagaag agcaatcgaa
     4201 gaggcatacc aattcaagtc tgataaaagg cattttcggc tctaaaaaat aatgcgcagt
     4261 ctaattcaaa ctttgttgat attaatacga accgaccctt tcaaatataa atgccgatta
     4321 atatggtttt tacgtgactg aagcgacggt tttagataaa cctaatttac cgaacactat
     4381 acctaataat attcacgtag tcgtagagat tccaaagggg agtaatatca aatacgaatt
     4441 tgatcccgca agcggatttc tttccgtcga tagaaaactg tatgctgcca tgcattatcc
     4501 atgcaattat ggttttattc caaacacatt agaggacgac ggagatccgg tcgatgtcct
     4561 ggtgttaggt gattggcctg tggtacctat gtctatgata aaagcagtgc cagttggtct
     4621 cctatttacg aaagacgaag aaggtaatga ctctaagatc atatctgtac ctaactcaaa
     4681 aatagatcca agatttgcca atattagaaa tattgatgac attccatctt atctacttga
     4741 cgaaatcaaa catttttttg aacattataa agaactggaa cctgggaaat atgtgaaggt
     4801 aacaggatgg ggagatagag aatccgcttc ggaaaaaatt tctgaggcta ttgaaagatt
     4861 caaaaatgga aattcatcta aagggccttg aactgttcac tccatcggct ataagcacgc
     4921 atcatgtcta tacttacact cggttttctc atctttagta tctctttgaa atccgatggg
     4981 gctattgacc tagtgtttgc ttcctcctcc agtgcctttc cactttgaaa aagttcatcg
     5041 actactcgaa gttgtgcaga ctgacaaata tcctttacgt cgctagcact atatccgtcg
     5101 gtcaacttgg caagatcttc agatttcagt gatttttcca tctttagcct ttctgtgtat
     5161 tggcgaaata gatgtatcct ggatgcctgg tctggaagag agacatatat ccttttttgg
     5221 aagcgtcgta agaatcctgc ttctaaactc caaggtttat tggttgcgcc aattacatat
     5281 aatttcgaag ccttggattt atcatttatt ccgtccattt ctgtaagaaa ttgattcttt
     5341 acccgaacct ctcctcctat ttcgccattc cttgaaccaa gcagcgagtc tatttcgtct
     5401 acgaaaagaa ggactggtac accttcagta tcgtggagtc ttcgagccaa attgaaaagt
     5461 tttgaaacat tcttttctgc ttcccctagc catttgctca tcatagaagc tgcatcaaca
     5521 ttgatgaaat aaccctctat ctcagcagca gcggctgctg ctagtaaagt tttgccacat
     5581 ccgggtgggc cgtacaacaa aatgccacgc ggccagccca atggaaatag atccattcgc
     5641 tttgtagggt atactataga ttctctgatc gcacgttttg catcatctaa tcctatgacc
     5701 tcttcccaag taacgtgtgg tttgtctttc atcaccagat catcgaattc agcaccaaga
     5761 ctttcagttc ctgcatctct tttacgatta gtgctgttgg ccggtgtatt tgatgaataa
     5821 gttgttgttt tacgaaacat ttgatctgtt ttttcagggt gaacatcagc aatgccatta
     5881 gtcatttgca gtgcttttac tctattttgg taggcgcttg ccctctccat gtaaatcttg
     5941 ttcaatttgt attctggata tatttggatg agctttacca acgcctcaat tgctctttga
     6001 tatgcttgaa ttgccatccc tctagaacct tctgaatcta atcttatggc ctcagcggca
     6061 tacttactgg cactattttc caattcttgt ggagcaagac tcatgataat aatacaaacc
     6121 tcattgaaaa ttggtgctga tactttgaat tactatgttg tgaatctata ttgtgtaagg
     6181 aacaaaataa attgaaccaa ttcggttgat tttagatgag aggagattca ctacaataga
     6241 tcttagcggg atccattgta tgagatttcc catgacacaa agcgcgtatc caatctagca
     6301 agccatcttg ataaatactt ctaccctcgt ttcaccaatg ccaggacccc tcaaattagc
     6361 aattgctttt actttttaca gatccgaaat ggattacttt gaaagtaaga ttggacgctc
     6421 tcaagaagat caataccaaa gtttgtaggt ccttgattcg ttttgcaggt tgcttaggat
     6481 ttatattatt atttattatt attctttgca agatccttag acacttttta gtgtagcaac
     6541 agctgttgga atcaccacca atccgtacgc attcttatgt tcctcattat aggataataa
     6601 agaatttggc tgggtctcat aaattaaccc cgaataattc atcgtacttc aaaaagtttc
     6661 gtcttctaat ttttttcaaa ttggaattta ctcgtctagt tgttaactga attttgggac
     6721 ttgacggaac gatcgaagat gatctagttg ataggcctta cacttcaaaa tctaacgccg
     6781 tgttttcgat aagcccctga actccgatct tgatcttccc taattggatt tgtgattgaa
     6841 gtaacgggag ttaaagtatg aatagtcaca gctcgacaat tttttcagtt ttatataatc
     6901 tatttgacat ccaactttac ttctattaaa taagattcct ccgcatgact cacgctaaga
     6961 catattcctc atcactggag tttgatataa ttggaaatct cgaggaattc ggactgtcaa
     7021 aatacgaagc tagggcatac attacattgg ttgaaaaagg tacattaggc gcaagtgaaa
     7081 tagcttacta ctctcatttg cctcgaacta aaatatatac aactctaaaa aaactcgaga
     7141 aaaagggcct ttccacaatc acagagcgga agccgctaac tgcttctgca gtcccccccg
     7201 aagagggatt catggagatt atgaaactgc atgaaaagag attaaaaaat atgaaaggaa
     7261 ttgttcttgc actaaagaaa atcgaaaacg acggaagaag atcatccaac atggaagaaa
     7321 aaaaatacat catccttgat ccattctttg ctgaggaaaa aattcgggac ctgattcagg
     7381 atgccagaag ctccatcaac gtaatggtag attcgtgggg gttgaatgtt gtttctagat
     7441 gtaaagaagc cctcctgtct gcgattatga gaggaattaa agttagacta ctgattggat
     7501 ttcaatgcgc agacaaccct aatattcatt caattccaag cggactagaa attagacttc
     7561 accaaattca cgataatatt ctaaccatag acacttcaaa agtagttact attgacggga
     7621 ccaatggaaa agcggctgtt cttaattcct tggatatctt tgcgtctagc cacatccggt
     7681 tgtttgagga aaaatgggaa ggagcaataa aagttggcaa tctttctgac ttggagactg
     7741 gtattcttgt aaatgcacta agattaacaa gaactcttga agataaagtg gcaactcaga
     7801 tatttgatca tgtagctaga ccagattcag atcttgcgcc aattgtcaat gcaatagaac
     7861 acgccgggat aagaattatg caatacagca taaatgaatt gatacgattg atagattatg
     7921 caatgagatt attttatgaa ggagatctaa gatatgacat gatgtataat atgttagtct
     7981 taagatccga gtcatctgag aaatcgctta ttccttgggc tctcgtaatc atgtcatatc
     8041 ttaacaaaat tgggaatgag gcaaagatga tatgtgatcc tgagaaagta ataggaaatc
     8101 gtgttcatct aaaactatcc aacccaatat ctaattcaga ataatcactt tataatgtga
     8161 gtaattgact ttttcttctg gctcgcgcca tcatcgaatt tacgttctct gtatctgact
     8221 gatagagaat taccacatat agaacatgaa cttgcacttg acgaatattg ccttctacat
     8281 tctttgcaaa ctttagtcca ttttcttatt ccttttattc catagctggc cagattccag
     8341 gtgcgaacgc acattacctt agccaagttg caaactctat agtcatctga cacaattgta
     8401 cctccatatt caattgccaa agatatgact gatatatcag gcccagaaat tttggaatct
     8461 cctatttgtc gggccattgt cttcactcga ttgatagatt cttgttttgg ttctagaatt
     8521 gaaatttttt gtccttctat caagaaactc atgagcgaaa tattttttct tatgtgagaa
     8581 acttcattaa ttatctcgtc ggtggtaatg cacttttcac taactcttag atggaatccc
     8641 tgatagaaag ccgttgcatc caagacaaaa atgtcagaag ccgagccttg caacctgctg
     8701 tatccctctt ttgtttagtc ggacaaacat tccgtcaaat ggatatctcg agattgttat
     8761 aggagattct gccttcacat cgaaaacttc ttgtccatca atcactactt tagaatcgtt
     8821 ggaagaagtt atggatatgt cttgaggttc tacgatcaaa catggcatct tattaactgg
     8881 ggcgacagga tggatcagca aacattttac ctgttcatga attatgggtc catccaatga
     8941 gagtgagtgt cctgttgaac ctgtgggcgt agaaataatt ataccgtcca ttctttggga
     9001 aacatgttcg cttaaaagac ttattctgag tgacggggtc cgcgttaaat tcactcttgt
     9061 gataactaca tcattcaatg caggaccaag tatctttcct tcgatttggg cttgcagcct
     9121 tatcctagaa tcaagaaagt actcatcttt aacaatagcc tctaattggg tgccgatatc
     9181 agaatgtcca acttctgcca aaattcctct tgtaccacca atattaatgc tgaaaacagg
     9241 cgtgatattt gggaccattc taaatgtccg cagggttgtt ccgtctcctc ctactgcgaa
     9301 gactaaatcc aaattaatat ccctaatttt ttctggagaa accataatta catcagaacg
     9361 atcgatattg tttactgaga aaacctgcac attccttgtc ttgaagtact ccgcaatttt
     9421 tcttcctgca tctatggcta caggattatt aaattttgta actatagcca cgttacggat
     9481 ttccaattgt ctttccaacc ttcactccca tttgtgactc ttaaatgcat tgttgtgcta
     9541 agatggcaaa ttcggaattg ctgaaattca ttcgaaatat ccacaagaat aaataacgac
     9601 aataaaaatg attttggtgg gccgatagct cagcttggtg gagcgttcga ctgataatcg
     9661 aaaggtcaag ggtccaaatc cctttcggcc cactatacat tatgacctat ctcgattgcg
     9721 agatttttct caactttgac cacgttcgat tcatttgaaa ctactcgtaa gacttcttat
     9781 attcatgttc tacccacttg ataagagacc caaaatctga gcttacaaaa tcaggcccta
     9841 gtgtcagagc catatcatat agatcttcct tagtaaaaag aattaatcta atatcacctg
     9901 aaaatctagc tttcaaactt ttcaaggcat tgcaaagaaa tcgtagggtg ttctctgaga
     9961 acgagaaaat cagaatcaga attaggccat ttctgtttcc atatgatttc aaaatgtatc
    10021 tttgtatatc tatgtcaaag aaaggatcta ttttttgctc gacatttccg atgaaagtag
    10081 aatcccaacc agaaaggtgc attaaagtag aggcgatttt cgcaaaatga attgaatctt
    10141 cagatcctgc ca
//
LOCUS       DASSIK010000100         2124 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_118086, whole genome shotgun sequence.
ACCESSION   DASSIK010000100 DASSIK010000000
VERSION     DASSIK010000100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2124)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2124)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2124
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_118086"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..218
                     /locus_tag="VFI64_01910"
     CDS             <1..218
                     /locus_tag="VFI64_01910"
                     /inference="COORDINATES: protein motif:HMM:NF014244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HET7242073.1"
                     /translation="NMLYWLWFINFNLGIFNALPIGPLDGGQLYGALIESRSRFNKAR
                     LKNISTVVSWVMVLIVVVGFVIPYLPF"
     gene            405..>2124
                     /locus_tag="VFI64_01915"
     CDS             405..>2124
                     /locus_tag="VFI64_01915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HET7242074.1"
                     /translation="MNNEILNQNIDGNESLTLENTRKTRNVSKNKKSIGQNNSEKRDR
                     LDEDDILANVIRPSIPKESEITSAKFEGPNISLYTLNPKFSLTELTYYLSSLSRSLKK
                     RFIIRTDPSIRLSEEETRSTILKILPNGVSISAVFCDDATGEVVLEVSHPELITPTIF
                     IDIAEKTGWIAHTLRSPHIPSSSINVIHSNLKNSAKERSLFLQTLGKRIFRRPLILSN
                     EYDDYSNGVGKTGSFDEPGMRSRPRSRQEISLFCLGGVKQVGRSCFIVVTSESKIMLD
                     CGINPGENSGISAYPRLDWFNFDLDEIDAVVLSHAHIDHQGFLPTLFKYGYKGPVYCT
                     EPTLPLMTLLQHDSVKIAKNNGTFLPYESRDVNEVIKHCITIPYGKPTDISPDVTITL
                     NNAGHIMGSATVHLNISGVHNILYSGDYKYAKTQLLDSAVSIYPRVETLITESTYGNS
                     SDLMPDQSTVYRTFTDSINQTLSTGGKVLIPVPAVGRAQEIMLVIDREMREGRLMEAP
                     IFIEGMISEASAIHMAYAHYLGYDVRKSVSQGVNPFQSDYFTVVNGHGRRDEVFNDEN
                     PSVIMAT"
BASE COUNT          689 a          377 c          434 g          624 t
ORIGIN      
        1 cgaatatgct ctattggttg tggtttatta acttcaactt gggaattttt aatgcgttgc
       61 ctatagggcc actggatggt ggtcaacttt atggtgcact gatagaaagc cgatcacggt
      121 tcaataaagc tcgccttaag aatatttcta ctgtcgtttc atgggtaatg gtattgatcg
      181 tggttgtggg gtttgttata ccttatttgc ctttttgaag cgaccattaa ggaaaattaa
      241 ttgacgaact acaatttaat ccaaaatata tattaatgga ggttatatga aagtaagcgg
      301 atactaacga tattgaatct atattccgat aagtacgttc tacgtattta tctcaaatgt
      361 aaagggtaca tagttcctca tatccagaat agaagtatta agaagtgaac aatgagattt
      421 taaatcagaa tattgatgga aatgaaagtc ttacgttaga gaatactaga aagaccagga
      481 atgtatcaaa aaataagaaa tcgataggtc aaaacaatag tgaaaagagg gacagattag
      541 acgaagatga tattcttgct aatgtaattc gtccttcaat tccaaaggaa tcagaaatca
      601 cgtccgcaaa atttgaaggc ccaaatattt cactttacac cttaaatccc aagttctcat
      661 taaccgaatt aacttactac ctttcttccc tatctagatc attaaagaaa aggttcatta
      721 tcagaaccga tccgtcaata agattatcgg aagaagaaac tcgttctacc attttgaaaa
      781 tacttcccaa tggagtaagc atatcagctg ttttctgcga cgacgctact ggagaagtgg
      841 ttttggaggt tagccatcct gagctcatca cacctacaat attcatagat atcgctgaaa
      901 aaacaggctg gattgcacat acgttacgtt cacctcatat cccctctagt agcatcaacg
      961 taattcattc aaatctgaag aattcggcta aggagcgaag tctattcctg caaactttgg
     1021 ggaagaggat atttaggcgg cctcttatac tgagtaatga gtatgacgat tattctaatg
     1081 gggtaggaaa gacaggctct ttcgacgaac ctggtatgag atccagacca aggagtaggc
     1141 aagagatatc acttttttgt ctaggaggtg ttaaacaggt agggagatcg tgtttcatag
     1201 ttgttacatc tgaaagtaaa atcatgctcg attgcggtat caatccagga gagaattctg
     1261 gaatatcggc ttatcctcga ttagattggt ttaattttga tcttgacgaa attgacgcag
     1321 tagttctaag tcatgctcat atagatcatc agggattttt acctacgctt tttaaatacg
     1381 ggtacaaagg tccagtttat tgcacggaac caacacttcc attaatgacc cttcttcagc
     1441 acgattctgt taagatagca aagaataatg gtacattttt gccatacgaa tcaagagacg
     1501 taaatgaagt cataaaacac tgcatcacga taccttatgg taaacctacg gatatttctc
     1561 cagatgtcac tataacacta aacaatgcag gtcacataat gggaagtgct acagtgcatc
     1621 tcaatatttc gggtgtacat aacatattat attcagggga ttacaaatat gcaaaaaccc
     1681 agttactaga tagtgcagtg tcaatttatc ctagagtcga gactctaata actgaaagta
     1741 catatggtaa cagcagtgac ttaatgccag atcaatccac agtctatagg actttcactg
     1801 atagcataaa tcaaacacta tctactggcg ggaaggtcct gatacccgta cctgcggtcg
     1861 ggagagccca agagataatg ttggtcatag atagagaaat gagggaaggg agacttatgg
     1921 aggctcctat atttattgag ggcatgattt ctgaagctag cgccatacat atggcttatg
     1981 cacattacct tggatatgac gtgaggaaat ctgtctcaca aggtgtgaat ccattccaat
     2041 cggattactt tacagttgtt aatggacatg gacgtagaga tgaggttttc aatgacgaaa
     2101 atccttcagt tattatggct actt
//
LOCUS       DASSIK010000101         2016 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_612346, whole genome shotgun sequence.
ACCESSION   DASSIK010000101 DASSIK010000000
VERSION     DASSIK010000101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2016)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2016)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2016
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_612346"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..378)
                     /locus_tag="VFI64_01920"
     CDS             complement(<1..378)
                     /locus_tag="VFI64_01920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242075.1"
                     /translation="MQERFSGFSWSKLKFFGIVCAIVTAVTIPLIYPHLAHPSMVYHI
                     ILHVASLAIAIFLCFVSVSAYYRGGRTRLLFMALGFVTLAVLEALLLLSATGNLAEPI
                     IPAVNVELQHVILLAMITLFGLGV"
     gene            complement(488..901)
                     /locus_tag="VFI64_01925"
     CDS             complement(488..901)
                     /locus_tag="VFI64_01925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242076.1"
                     /translation="MSNAKIQGVKGHTSDGKLLVELEYSPEVVKKDELTFFRINFFDS
                     DSNDRTRHVDCDLIVRKSGTELFKASKQYGEPLIHSPNGILLTSFGFNETGRYTLSVE
                     VGGLNFFPIKPLFVDFFATISKMSDGSFKSILSAQ"
     gene            1107..1694
                     /locus_tag="VFI64_01930"
     CDS             1107..1694
                     /locus_tag="VFI64_01930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242077.1"
                     /translation="MKNYKAQSVTLAAILIAAVGSTSILIASSTQYSNAQEHTSTVVR
                     DSAVVLLGGRTLPANNFIHLYDTTPYMIMNGHIAAKLPCNEKSESPLKILMGSAPNLA
                     AAEFETIKELSTPGQMCLYHVDVESHPDTANGTITDIAIQNPTGDNIDFPSTATVVIG
                     VNEIAPIAGGGHEGNEEGSAASNSTESMTMGNSTG"
BASE COUNT          673 a          395 c          368 g          580 t
ORIGIN      
        1 gactcctaag ccaaaaagtg ttatcattgc aagaagaatt acatgttgca attctacgtt
       61 tacagctgga attattggct cagccaaatt tcctgtagct gaaagtagca ataaggcctc
      121 caatacagca agtgtaacga atccaagtgc catgaaaagt agtctggttc ttccacctcg
      181 ataataagca gagacagaga caaaacagag gaagatggct atagccaaac tggcaacgtg
      241 taatataata tgataaacca tggaaggatg agcaagatga ggatagatga ggggaattgt
      301 taccgcggta acaattgcgc aaactatacc gaaaaacttc agtttgctcc aagaaaaacc
      361 cgagaacctt tcttgcatct gcacactaca tttatgactt gaacaaattt aaattcattg
      421 gtacacccct cgaaaaagct tatcaatggg gatgtggatt agctgaattt gtacttgata
      481 atttgattta ttgagcagac aatatggatt taaaactccc atctgacatc ttactaatgg
      541 tagcaaaaaa atcaacaaat agaggcttta tcggaaagaa atttagtcct ccaacttcta
      601 cagataatgt atatctgcct gtctcattaa atccaaaaga tgttagtaat atgccatttg
      661 gtgagtgaat taaaggttca ccgtactgtt tggatgcctt gaacaattcc gtcccacttt
      721 ttctaacgat gagatcgcag tcgacatgac gagttctatc attgctatca ctatcgaaga
      781 aattgattct aaaaaaggta agctcatctt tttttactac ttctgggctg tactctagct
      841 cgacaagtaa cttaccatct gaggtatggc ccttaacgcc ttgaattttt gcattactca
      901 ttgaataaaa tggattgttc gcaattacta atgaatatga atattgataa aaggcaggca
      961 aaatcaacat acctgttaat aatattgaag tgaaggcaat aacacctctc atttttgaat
     1021 tatcatcact atagtaatat aaataaaacc attctttcga ttggtgtact ataaaggata
     1081 aatagacatg cacattcata ctttcaatga aaaactataa agcacaatcg gtcacactag
     1141 cagcgatctt aatcgcagca gtaggatcca cttcgatact cattgcgagt agtacgcaat
     1201 attcaaatgc acaagaacat acatcaacag tagtaagaga ttcagctgtg gtcttgcttg
     1261 gcgggaggac attacctgcg aataatttta tccatctata tgataccacc ccgtacatga
     1321 tcatgaatgg acatatagct gccaagcttc cgtgtaatga aaaaagtgaa tctccactta
     1381 aaatcctgat ggggagtgca cccaatcttg cagccgcaga attcgaaaca atcaaagaat
     1441 tgtccacccc cgggcaaatg tgtctgtacc atgttgacgt agaatctcat cctgatacag
     1501 caaatggtac tattactgac atcgcaatac aaaatcctac aggggataat attgattttc
     1561 catcaactgc caccgtggta ataggtgtta atgaaatcgc cccaattgct ggaggaggac
     1621 acgaaggcaa tgaagaggga agtgcagctt caaacagtac tgaaagtatg actatgggta
     1681 atagtacagg ctgacaaatt taaccaatct ttttattttt tattttttca ttaacattat
     1741 agtacattcg tcgaatgcac cagtaatatt ataagctgta gattcttcat attagtatcc
     1801 ataaaagcca gaaatggatt tactcaataa cggattgggg accttgtgtc attaggttcc
     1861 ctaatccaga tcatatgtat tggcagatcg tacccagagc ccatctattc atatctttat
     1921 ttcccaatgt ttgaaggagt tacttgaccc tgaatctctc cgttctcatt agcttctgtc
     1981 cgaacaacaa cgtagactga ttcattattc actaga
//
LOCUS       DASSIK010000102         2267 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_216510, whole genome shotgun sequence.
ACCESSION   DASSIK010000102 DASSIK010000000
VERSION     DASSIK010000102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2267)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2267)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2267
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_216510"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1410)
                     /locus_tag="VFI64_01935"
     CDS             complement(<1..1410)
                     /locus_tag="VFI64_01935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase family protein"
                     /protein_id="HET7242078.1"
                     /translation="MNNKSRVDKIIQASRGNPKVITEDSAKEILSQYSINVPPFALVT
                     SSKDAVSKAREIGFPLVAKIVSPDILHKTDVRGVKVGLNSEQEVKDAFEEMYFRLKEK
                     YDVTGVLLEKMVPSGVEIIVGLQNDSQFGPCIMVGLGGIYTELFKDVSFRVLPINKTD
                     ALEMLESLKGKSILKGFRGSKPIDLEMLATAIVNIGTLGTDMAGKYESVDFNPVVVYP
                     DNYYVVDAKIILRTLPSDDSISKSVPDSSYMDLFFNASSVALIGASPEAGKIGNSVLE
                     SLSKHQYKGKVYPVNAKGYPEIMGLKAYKSLSDISDAVDVVVVTVDLRFVPDLLKECG
                     RKNIHNMVVISGGGKELGGERAEIEKQVQTISKELKVRIIGPNCIGIFNAENGLDCAF
                     QGHARMLRPRRGKVAFLSQSGTIGIAFMETSDAFGLSKMISYGNRSDVDEADMIQYLA
                     EDPKTDVIGLYVEGLGDGRK"
BASE COUNT          671 a          494 c          377 g          725 t
ORIGIN      
        1 tttacgtccg tctccaagac cttcaacgta taatcctata acatctgtct ttggatcttc
       61 agccaaatat tggatcatat ctgcttcgtc aacatctgat cgatttccgt atgatatcat
      121 tttgcttaat ccaaatgcat ctgatgtttc cataaatgca atccctatag tcccactttg
      181 ggagagaaat gcaacttttc ctcgccttgg cctaagcatt ctcgcatgtc cctgaaaggc
      241 gcagtcaaga ccattttccg cattgaaaat accgatacag ttgggtccga taatacgaac
      301 cttgagctcc tttgaaatgg tctggacttg tttttctatc tcagctcttt ctcctcctaa
      361 ttcttttcct cctccagata ttaccaccat attgtgtata tttttacgac cacactcctt
      421 tagcaaatct ggaacaaatc gtaaatccac agttacaact actacgtcaa cagcgtcact
      481 aatatcggat agactcttgt aagctttcaa acccattatt tcaggatatc ctttggcgtt
      541 tacaggataa accttccctt tgtattgatg ttttgagaga ctctcgagca cagagtttcc
      601 tattttgcct gcttctgggg atgcaccgat caaggcaacc gagcttgcat taaagaagag
      661 gtccatgtag ctagaatctg gaacagactt tgagatcgaa tcgtcagacg gtaacgttct
      721 taagataatc tttgcatcaa cgacatagta attgtccgga taaacaacta ccgggttaaa
      781 gtctacactt tcgtacttcc ctgccatgtc agttccgagg gtacctatat taactatagc
      841 tgttgcaagc atttccaggt ctatgggttt tgatcccctg aatcccttaa gtatcgattt
      901 ccctttgagg ctttctagca tttccaaagc atcagtcttg tttattggta agactctaaa
      961 agaaacgtcc ttaaacaatt cggtgtaaat tcctccaagc cccaccataa tacaaggtcc
     1021 gaattgtgag tcattttgaa gcccaacaat aatctccacg cccgagggta ccatcttttc
     1081 aagcaaaact ccagtcacat cgtatttctc cttgagtctg aaatacatct cttcgaaagc
     1141 atcctttacc tcctgttcac tattaagccc cactttaact ccacgcacat cagttttatg
     1201 taaaatatca ggcgaaacta tctttgcaac aagcgggaat ccgatttcac gagctttgct
     1261 gacggcatct ttagaggaag taactaaagc aaaaggtggg acattgatag aatactgact
     1321 aagaatttct tttgcagaat cttctgttat tacttttggg tttcccctgg aagcctgtat
     1381 tattttatct actctactct tgttattcat gcctaactca gacgaacaaa gaggcttcct
     1441 ttgcttctaa ttaacttttc tcgagaattt atcttatttt cccaaaaaca cacggctcag
     1501 gtgaatcagg aatgcccaaa ttctttacaa aagccagaca gcttctcaga tcttactggc
     1561 aggccgccca cgttttgtgt aaaagaggac atttttgtgc atatttctca gatgtgggtt
     1621 tagattaatg gataaaagaa caatatgacc gtttacgaac aaatatcgat gctttcatta
     1681 aaatatttag ttttgtatcc aagtgtttga aacttggcct aattgttaat gacccactcc
     1741 aaatgagaag aattcctcta aagcgtttat ctattcactt ttattattgc tcttcagaac
     1801 aagccctatt taatcaaatc cattttgaca ctgagcaaat cctctcattt atcattttat
     1861 tctaaacata aagttgtgat gaataaagta tccacttatt atgtggagaa tgctggtggt
     1921 ctattagatt cagatttaat tttgaatcca cgacaataaa gtgacctaaa aagttacttg
     1981 aaacaaaatt atttaaacat gttacctttc gagtacaagg atcaaaatca tgcgttattt
     2041 gtacttggta aacaacatgt ttgtcgtgcc aaagccacga ctcctggcca gaaatggaat
     2101 gcaaataaat tgtgaaagtt tcgctacgat aaaaaaaatc gattcttgag tttagaacca
     2161 aattcggaga gaagagagaa aaaagaaaaa agacctgtac agtttcctat tctgccatcg
     2221 ggtgtttctt ttaacaattc attgtatact tttaaaaaat gaccgcc
//
LOCUS       DASSIK010000103         2008 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_118538, whole genome shotgun sequence.
ACCESSION   DASSIK010000103 DASSIK010000000
VERSION     DASSIK010000103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2008)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2008)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2008
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_118538"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(311..514)
                     /locus_tag="VFI64_01940"
     CDS             complement(311..514)
                     /locus_tag="VFI64_01940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242079.1"
                     /translation="MGQNASSAVGSAINSADQTSTELGKDASNTGESLLNQTGEVAKK
                     IIGGAATVLGNVSGEIKEGVRAK"
     gene            complement(577..732)
                     /locus_tag="VFI64_01945"
     CDS             complement(577..732)
                     /locus_tag="VFI64_01945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242080.1"
                     /translation="MKNEYFIIGIVFSIVLFATAGTRTMVAQNLTDSASNALKNASVS
                     VNQLHLK"
     gene            complement(873..1106)
                     /locus_tag="VFI64_01950"
     CDS             complement(873..1106)
                     /locus_tag="VFI64_01950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242081.1"
                     /translation="MGEGNTIQPTLLGNVVFNVITTLDIATNVYMKLRTIDAVELSGA
                     QTKEEIDKLVDSLIEDDTIKSISKKMTTGRTKI"
     gene            complement(1126..1344)
                     /locus_tag="VFI64_01955"
     CDS             complement(1126..1344)
                     /locus_tag="VFI64_01955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242082.1"
                     /translation="MTRTTKYAKKERKGEHPDKQPHVSELFDIISDKISISILRLVSG
                     QGEMTSPKEIIAKMKIARKKFLQHNFKT"
     gene            1481..1630
                     /locus_tag="VFI64_01960"
     CDS             1481..1630
                     /locus_tag="VFI64_01960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242083.1"
                     /translation="MELIGMISWSGLAFVTVIGVFIAIGWKLKGGDKIVLRTRIRGAE
                     EPSGL"
     gene            1620..1877
                     /locus_tag="VFI64_01965"
     CDS             1620..1877
                     /locus_tag="VFI64_01965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242084.1"
                     /translation="MAYSDATDALQQLLQLRSNGGSITSFARRVSTITNGLPYYFVEV
                     TSQNGSQYAIQAYGDEATELYDEVMRITGNLPMLGTRTKKM"
BASE COUNT          608 a          397 c          358 g          645 t
ORIGIN      
        1 gcactttgat ctttaaagtt ttatatatcg tgacgtttac tacatgatta tgaccaccga
       61 tgaaaaacaa tatagatgtg ctcagtgcgg tgtatccttt aaatcggcgg aagaagcgaa
      121 agcacatcta ctccaacact aatagtcgat accactaaag gtaatttgta aaccaaattg
      181 caaatcatgt gctcttggct tacaaataat aataacaaat tacagctacg tctttgtgtg
      241 cttagtctta ctgaccctcg tcagaatata aaaaataaaa agattatgac agctacaact
      301 aactaacgtc ttactttgcc cttactcctt ccttaatttc tccgcttaca tttccaagaa
      361 ctgttgcagc accgccaatg atttttttag caacttcacc tgtttggttc aatagtgatt
      421 caccagtatt tgatgcatcc tttcctaatt ctgtcgaggt ttgatctgcc gagtttatag
      481 cactgcctac tgcactactt gcattctgcc ccatttcaga cgtcgttgca ttagctgaag
      541 caacggcgtt gtttaaggca ctacgtgcat tctttcctac ttcagatgca gctggtttac
      601 cgatacactg gcatttttaa gggcattaga agcactgtca gttaaatttt gtgccaccat
      661 ggttcttgtg ccagctgttg cgaacaatac gatcgaaaag actattccaa taatgaagta
      721 ttcatttttc atgagagaaa aatcatcaga attaggtttt aaacttcatg tcagctgatt
      781 acagaacttt ttcagatccc aataattcta agccaataaa gaacatgaaa attcaaactg
      841 agtttatcct aaaaaaaagc agcatgacgg atttagattt ttgttctacc tgttgtcatc
      901 ttcttcgata ttgatttgat agtatcgtct tctatcagcg agtcaactaa tttgtcaatt
      961 tcttccttcg tctgagctcc agataattcg actgcatcta ttgttctaag tttcatgtaa
     1021 acgttcgttg caatgtcgag ggttgtaatt acattaaaaa ctacgttccc taatagtgta
     1081 ggttgtatag tgttaccttc ccccatttgt aaaaggccaa cgttttcaag ttttgaaatt
     1141 atgctgtaaa aatttttttc tcgctatttt cattttcgct ataatctcct tggggctagt
     1201 catttctccc tgaccactta caagtcttag aattgaaatt gatattttgt cagaaattat
     1261 atcaaataac tcgctaacat gtggctgctt gtcaggatgt tctccttttc tttctttttt
     1321 agcatatttt gtagtacgcg tcacgaaatc ttcattccac ctcgaacaga agtgatgata
     1381 acacttgtta agctcaatgt ttaagaaatc ataatcgcac ataatttctc ttatgcgtag
     1441 attacaatat gttatagtca agactctccg atcatatctc atggaactaa taggaatgat
     1501 ttcatggtca ggactggcat ttgtaacagt cattggagta ttcatagcaa tcggttggaa
     1561 acttaaggga ggcgacaaga tagttctcag gacacgaatt cgaggagcgg aggagcccag
     1621 tggcttatag tgatgccact gacgccctac aacagttgct tcaacttcga agtaatggag
     1681 gaagcataac ctcatttgct cgtagagttt ccactataac aaatggatta ccttactatt
     1741 ttgtagaagt tacatctcag aacggaagcc agtacgcaat tcaggcctat ggagatgagg
     1801 caacagaact atatgatgag gttatgagga ttaccggaaa cctccccatg ttgggtactc
     1861 gtaccaagaa aatgtgattt aggaaaacta tttggataaa atccaaaaat atccagtgat
     1921 acttgaaatc ccaagataga cgacacaaga acagtcagag cagttatagg tcagattatt
     1981 agattgtgct tactaaaaac aatcaaaa
//
LOCUS       DASSIK010000104         2057 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1102281, whole genome shotgun sequence.
ACCESSION   DASSIK010000104 DASSIK010000000
VERSION     DASSIK010000104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2057)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2057)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2057
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1102281"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            148..1578
                     /locus_tag="VFI64_01970"
     CDS             148..1578
                     /locus_tag="VFI64_01970"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HET7242085.1"
                     /translation="MSLQKVTQNIEQKRRISFVRFLLLAAIGSVLIAKFYFMLYVVDI
                     TIGIYSFLTSFVLFNIIFLAYFRYKDPYLEAQDVDITKYAPLVSIVVAVKNEEDNIRN
                     CIHSCLVQTYKNKEIFVVNDGSTDKTGQILDQMHRESDSKNFHILHLSKSVGKKQAIE
                     AASEIAHGEIYAFMDSDCDMECTAVEKAVKVFCHDRKLGALTSHGRVRGAHEGNIFQK
                     FQDVYIDGSCRAVKGAESTFGSVTCCSGSLSFYKRAAVQDFIHEWAHDQFLGMEFKFC
                     TDRRMTAHVLGTPVEPQADKTEKTYSSILAIGSDELENMRSSSDPDLSISKPSKPCWN
                     VKYSYSIRVNVGVPTTISALVKQQIRWKKSFIRSLFSTGGIYWKRPFLSALLYYIQTS
                     MRFVRPYIVFYSIVMLPLKGDVISLIFWISGIMFTGMIYAVDFRLRNPGDRLWLYRPL
                     FTFLTTFVYTWLLIYSAITIRNKSWR"
     gene            complement(1807..>2057)
                     /locus_tag="VFI64_01975"
     CDS             complement(1807..>2057)
                     /locus_tag="VFI64_01975"
                     /inference="COORDINATES: protein motif:HMM:NF026968.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HET7242086.1"
                     /translation="PCCIQMKESKDGVLKFLEINPRLGGGTIFTTLAGANFPAMIVQM
                     AKGEELIMPKVSEITVIRYYEEIVIRNEDSMKFGSSSS"
BASE COUNT          637 a          361 c          418 g          641 t
ORIGIN      
        1 agatctgatc tttttgacaa tagtagacat gactatagat tcataatgtt aataagaaaa
       61 taactagata gatcaggtat agatgcggcc tactaatatt gaagtgaaat caaccgatga
      121 aatatttgaa ttaaccagtg accatgaatg agcttacaga aagttacaca gaatattgaa
      181 caaaaaagga gaatatcgtt tgtccgattc ttattgcttg cagcgatagg atctgtactt
      241 attgcaaaat tctattttat gctctacgtt gtagacataa caataggtat ttacagtttc
      301 ttgaccagtt ttgttctctt taacattatt tttctagcat atttcaggta taaagacccc
      361 tatcttgagg cgcaggatgt agatataacg aaatatgcac ctttagttag tattgtcgtt
      421 gcagtcaaaa acgaggaaga taatattaga aattgcattc actcgtgtct tgttcagaca
      481 tacaaaaaca aagaaatttt tgtagtcaat gatggaagta cggacaaaac tgggcaaatt
      541 cttgatcaaa tgcacagaga aagtgattcg aagaattttc atattttgca tttgtcaaag
      601 agtgttggta aaaagcaggc catcgaagct gccagcgaga tagctcatgg cgaaatttat
      661 gcattcatgg atagtgattg tgacatggaa tgcactgcag tagaaaaagc agtaaaagta
      721 ttttgtcatg atagaaaact cggtgccctg acgagccacg gacgcgtcag aggcgcgcac
      781 gagggcaaca tatttcagaa atttcaagat gtttatatcg acggttcatg tagggccgta
      841 aaaggcgcag aaagtacttt cggttcagta acgtgctgct ctggctctct cagcttttat
      901 aaaagagctg cagtgcaaga ttttattcac gaatgggcac atgatcaatt cttaggaatg
      961 gagtttaagt tttgtactga cagaagaatg actgctcatg tactaggtac gccagtagaa
     1021 ccacaagcag acaaaacaga aaagacttac tcttcaattt tggcaattgg ctctgacgaa
     1081 ctggaaaata tgcgttcctc gtctgatccg gacttgtcga taagcaaacc ctcgaaacct
     1141 tgctggaacg tcaagtacag ttatagtata cgggtcaatg taggcgtgcc tactaccatt
     1201 tctgctctgg ttaaacaaca aatacgatgg aagaaaagtt tcataagaag tctattttct
     1261 actggaggca tttattggaa acgtccgttc ttatccgcgt tattgtacta tatccaaacc
     1321 tcaatgaggt ttgtccgtcc ctatattgta ttttacagca tagttatgtt accattaaag
     1381 ggagatgtca tttcattgat tttttggata tctgggataa tgtttactgg aatgatatat
     1441 gccgtagact ttaggctacg gaatcctggc gatagattat ggttatacag accgctcttt
     1501 acatttctca caactttcgt ttatacttgg ctgttgatat attcagctat tactataagg
     1561 aacaagagtt ggagatgact gctttgttgt tctcactttg cggacttaca cttcattaca
     1621 aaaatccttc ttaacgtggc aaaaagagct tggttcatct cgatgcaatt ctggttgctt
     1681 gtgcaatggt ggtaggattt tgtgtgataa tgatgaaatt tactggtttt tggccgtgca
     1741 gaatagcaga agtttttcaa gttgacagta ttacttgtac taaaagtttt ggggagaata
     1801 ttaattctat gaagagctgg atccaaactt cattgaatct tcattacgta ttactatctc
     1861 ctcataatac ctaatgacag taatttcaga aactttcggc ataattagct cctctccctt
     1921 tgccatctga acaatcattg ctggaaaatt agcgccagca agggtggtga aaatagttcc
     1981 cccgcccaat ctaggattaa tttccagaaa ctttaggact ccatccttag attctttcat
     2041 ttgaatacaa caaggac
//
LOCUS       DASSIK010000105         2184 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1102600, whole genome shotgun sequence.
ACCESSION   DASSIK010000105 DASSIK010000000
VERSION     DASSIK010000105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2184)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2184)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2184
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1102600"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(45..410)
                     /locus_tag="VFI64_01980"
     CDS             complement(45..410)
                     /locus_tag="VFI64_01980"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HET7242087.1"
                     /translation="MSKLKIMIVDDEVDICNLFRDALQLAGYDVRAFTNPTEALEDFR
                     LHNEEYGVIITDIRMPEMSGIELIKRVNQINKNVKVFLMTAFELKNEELQELRMNEFL
                     NKPIYTQRLVEMVKRYIPI"
     gene            complement(628..1509)
                     /locus_tag="VFI64_01985"
     CDS             complement(628..1509)
                     /locus_tag="VFI64_01985"
                     /inference="COORDINATES: protein motif:HMM:NF025774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MEDS domain-containing protein"
                     /protein_id="HET7242088.1"
                     /translation="MDNDPDVLSLFGGYLRANGLYTVLTGTGRACLDEVKKFKKRFDI
                     IILDTDLYDQKGVEVAKRILELNPDQKIIMTTTSSIDKLKRELTSVDISLENILLKPF
                     RLFQLLSTVKHVISRINNIVLKDHVLASYQSSTDEIQDAVQFLKNGIKNNECVMIVAR
                     RDSGLDEISEAFTVNGIDADKLMSNNSLLLVDNKEWYIPDEKVDKHRIIDQWNDLVNR
                     SRVSGKKGLRAFCMMDTFFEHGFVEQLVDYEHELPLRFDNPFLAICAYKQSDLDKLSN
                     SQRARMVECHNPVWIQN"
BASE COUNT          676 a          421 c          347 g          740 t
ORIGIN      
        1 tatgagagta gccttatatc tatatcattg aatttatacg ccaactaaat tggtatgtat
       61 cttttaacca tttcaactaa tcgctgcgtg tagataggct tatttaaaaa ctcgttcatg
      121 cgaagttctt gcaattcttc attttttaat tcgaaagctg tcattaggaa aactttcaca
      181 ttcttattta tctggtttac tctcttaata agttcaattc ctgacatttc tggcatacgt
      241 atatcggtaa taatgacgcc atactcttca ttatgaagcc tgaagtcttc taacgcttca
      301 gttggattgg tgaaggccct cacatcgtag ccagctagtt gcaatgcatc tctaaatagg
      361 ttacatatat cgacctcatc gtcaacgatc attattttta gtttagacat gtttcccgat
      421 tgaaattaat tagatatatg ggagtataaa ggtgtgttat tattcactat tgcctgataa
      481 attacctaat attctatgac cacgctaagc taaaataaca ccttaggcag acaatttctc
      541 aatataaaat acatgagata gattgacaaa caagcaaata tcgactggaa tgagcctcgt
      601 aaatgttacc ttgaagttat ttttacgtta attctggatc caaacaggat tgtgacattc
      661 taccattctt gcacgttgcg aatttgatag tttatcgaga tcactttgtt tgtatgcaca
      721 tatcgctaaa aaggggttgt caaaccttag aggcaattca tgctcataat caacgagctg
      781 ttctacaaat ccatgttcaa aaaaagtatc catcatacag aatgccctca aacctttttt
      841 tccgctaact cgagatcgat ttaccaaatc attccactga tcaataattc tatgcttatc
      901 gactttttca tctggaatat accattcctt gttatcaacg agcaataatg aattgttaga
      961 cattaacttg tcagcgtcaa ttccattcac agtaaatgct tctgatattt catcaagacc
     1021 agagtctctt ctagcaacga tcatgacaca ttcattgttt tttattccgt ttttcaaaaa
     1081 ttgcacggca tcctggatct catctgtcga ggattgataa gaggccaata cgtggtcctt
     1141 tagaacaata ttattgattc tcgaaatgac atgctttact gtagataaca attgaaataa
     1201 tctaaatggt ttcaacagga tgttctctaa actaatatcc acagatgtta gttccctttt
     1261 cagcttatct atactcgatg tagtagtcat gataattttc tgatcaggat tcaactcaag
     1321 gatcctctta gccacctcga ctcctttctg atcataaaga tccgtatcta gaattataat
     1381 atcaaatctt tttttaaatt tcttgacttc atcaaggcaa gctctaccag tccctgttag
     1441 aactgtataa agtccgttag cacgtagata tccgccgaat aaactgagaa catccggatc
     1501 gttatccact attaatattt gcgggaccgt acttttttct gttccacata ctatttatgt
     1561 gtattatgtt tttttcatgg taaaaatgta agaattttgt atgcccctgt ctgagtttac
     1621 attagcaagc aaaagaggtt gttatgcagc ccatctttgt aaatagacgt taatctatat
     1681 attgtaaggg atcagtattg aaagaaataa tcggcttgtt tttttggttt tactatcatg
     1741 ctttataaac agtccaattt aataaccaag taacgttgct cgttctgaga acacagtcat
     1801 aaataaaatg ggccagtacc agccacaatg ttagctaaac cctaataact gatttggatg
     1861 aaggaatgcg tctctgggta agagcaacat atttgctgga tcggttatcg tgctaggaat
     1921 tacaaaaagt accccaaaca ggaacctgag caagattatg atcactatta tgactataat
     1981 caccattgca atgtaaatca gcgaacttaa gaccatgtta ctatttgtac ataaaaggtt
     2041 atatctctta ttaacacaga gttacactaa acatcccaag gagatggaga cttgcttgtc
     2101 tcaatattat agtcacattt agtctctctt aacctacact tcgcctacga tgtcgagtgt
     2161 ccataatctg gtctatattt gata
//
LOCUS       DASSIK010000106         2324 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_613160, whole genome shotgun sequence.
ACCESSION   DASSIK010000106 DASSIK010000000
VERSION     DASSIK010000106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2324)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2324)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2324
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_613160"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..759)
                     /locus_tag="VFI64_01990"
     CDS             complement(<1..759)
                     /locus_tag="VFI64_01990"
                     /inference="COORDINATES: protein motif:HMM:NF012344.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242089.1"
                     /translation="MSHATVEWVYVGVVISLLTWVGAESWNVERTIEHVPTNAETIKV
                     IGQQWFWTFEHQDGTKEVGQLHVKQGVPYKFELVSKDVIHDFNVPEFVILMDAVPGRV
                     NVVWNMFDKPGQFVIQCREYCGFGHADMRAKLFVEPFTQTAEAATGGTSSGANQTSNG
                     TSSATTATQTSGPPGTPLKILKGASVQGSPNYDPATLTIKKGDKITVTNKDNVPHTVT
                     SGTGPTDPTSAKSFDTSIIEGGKSADITTEKLAPG"
     gene            complement(756..1121)
                     /locus_tag="VFI64_01995"
     CDS             complement(756..1121)
                     /locus_tag="VFI64_01995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242090.1"
                     /translation="MTYLSGHTKTLNYIRQTTEQRKRVRMGSKPRGWMLFLLFSPLVA
                     ILVIGIFNFNNASAQGAQNPEQYVIRRIDVWGLFYRLMVAAFVVGSVVQGSIVYVCWR
                     FRESNPKNRVRESLEGAHQ"
     gene            complement(1288..1911)
                     /locus_tag="VFI64_02000"
     CDS             complement(1288..1911)
                     /locus_tag="VFI64_02000"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF012521.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HET7242091.1"
                     /translation="MPLAIFMRHGEADNNVNRILVGRHIESHLTEIGRQQVRDTANYL
                     KEIVVDKVFVSPVIRARETAEIVCDVNNLDYEIDERLYEIELGKLVGMNYEDIIEKHG
                     NLFLKFYSGDEQMLDDYGVESFTSVKMRIKHLLDEAMERYPDKNIIFVTHLDPIKAAI
                     SLLLDLKPEALYQWHIRNAALTILKHESKIFSLSGVNVMGLDRYLKE"
     gene            2046..>2324
                     /locus_tag="VFI64_02005"
     CDS             2046..>2324
                     /locus_tag="VFI64_02005"
                     /inference="COORDINATES: protein motif:HMM:NF015747.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HET7242092.1"
                     /translation="MKVGIIGGTGGMGEGFAVRWAIHHEIIIGSRDIEKAKNAAVLYT
                     NAASSAYGTGMKGNITGSDNVSLASVVDVLILSIPYDSIQYTCSSISGK"
BASE COUNT          641 a          500 c          431 g          752 t
ORIGIN      
        1 tcctggagca agcttttcag ttgtaatgtc agctgatttg cctccttcta ttatagaagt
       61 atcaaaagat tttgcgctag ttggatctgt tggtcctgtt ccgctcgtga cagtatgagg
      121 tacgttatct ttgttggtta ctgtaatctt gtcacctttc tttattgtta acgtagctgg
      181 atcatagtta ggactaccct gaactgatgc acctttcaat atctttaaag gcgttcctgg
      241 aggaccgctg gtttgtgttg cagttgttgc tgaagatgta ccatttgaag tttgatttgc
      301 tcccgaggaa gttccgcctg tagctgcttc tgccgtttga gtgaagggtt ccacgaacaa
      361 tttagctctc atatcggcat gtccaaagcc acaatattct cgacactgaa tgacgaattg
      421 acctggttta tcgaacatat tccaaacaac attaaccctt cctggtaccg catccattaa
      481 aattacaaat tcaggcacat tgaaatcatg aataacatcc tttgatacta gttcaaattt
      541 gtaagggaca ccttgcttta catgaagctg ccctacttct ttagttccat cctgatgctc
      601 gaatgtccaa aaccactgct ggcctataac cttgatggtt tctgcgttag tgggaacatg
      661 ttcaatcgtc ctctccacgt tccacgattc tgcaccgacc caagttaaga gactaattac
      721 tactcccaca tatacccatt cgacggtagc atgactcatt gatgtgcgcc ctctaatgac
      781 tccctgactc tgttcttcgg attagattct ctgaagcgcc aacatacata tacgatagag
      841 ccctgaacaa ccgaacctac gacgaatgct gcgaccataa gacgataaaa taatccccaa
      901 acatcaatcc ttcttatgac atactgttcg ggattctgtg ctccttgtgc tgatgcgtta
      961 ttaaaattaa aaataccaat taccaatata gccactaatg gcgagaacaa taaaaagagc
     1021 atccatcctc taggtttcga tcccatacga actcgctttc tctgctcagt agtttgtctt
     1081 atgtaattta aggtttttgt atggccggac agataagtca agataatatt tttggtgtac
     1141 tgcaatggaa tattacgttc gtattcttaa caatgttggt aatagtaatg acactaccgt
     1201 aacaatacga cagatatttg atggctagaa ttttctatgg ccacgaccta atataactac
     1261 caaagttgct attatcatta tcattattca ctccttaaga tatctatcga gtcccataac
     1321 atttactcca gaaagagaga agattttgct ctcatgtttt aatattgtta aagctgcgtt
     1381 tcgaatatgc cactgataca gtgcttctgg cttgagatct agtaagagag aaattgcagc
     1441 cttaattgga tctagatgtg ttacgaaaat gatattcttg tctggatatc tttccattgc
     1501 ctcatccaga aggtgcttga tgcgcatctt aacggaggta aagctttcca ccccataatc
     1561 gtcaagcatt tgttcatctc ctgaatagaa tttaaggaaa agatttccgt gcttctctat
     1621 tatatcctca taattcattc ctacgagctt tccaagttca atttcgtata atctctcatc
     1681 aatctcatag tccaaattat tgacatcgca tacgatttct gcagtttctc gtgcccgtat
     1741 tacgggactg acgaagactt tatcgactac tatctccttc aaataattcg ctgtatccct
     1801 aacctgctgt cttccaattt ctgtcaagtg cgattcgata tgtctgccta caaggattct
     1861 gttgacgtta ttatcagctt ccccgtgacg cataaaaatc gcaagtggca tagctcttgc
     1921 atgatttagc gtaatctcca tattaagata gttaatttat tttttatttt gtaatctcat
     1981 aatctactag tatacttata accttaatag gatccggaat tactctaagg acgggttata
     2041 atatattgaa agtaggtatt attggaggaa caggtggaat gggtgaaggt tttgcagttc
     2101 ggtgggcaat tcatcacgaa atcattattg gatccagaga tatcgaaaag gccaaaaacg
     2161 ctgctgttct atatacgaat gctgcgtctt ctgcatacgg cactggaatg aagggcaaca
     2221 tcaccgggtc agataacgtg tctttggcaa gcgtcgtgga tgtcttgata ctttctatac
     2281 cttacgattc catccagtac acttgtagct caatttcagg taag
//
LOCUS       DASSIK010000107         2107 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_813609, whole genome shotgun sequence.
ACCESSION   DASSIK010000107 DASSIK010000000
VERSION     DASSIK010000107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2107)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2107)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2107
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_813609"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..205
                     /locus_tag="VFI64_02010"
     CDS             <1..205
                     /locus_tag="VFI64_02010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242093.1"
                     /translation="IFALLPGFIIGVKISVALVLTLPSNDAALGIFESYIDNVPIITN
                     TIPEIIRIKNVFSRDIGMSHTGC"
     gene            complement(871..>2107)
                     /locus_tag="VFI64_02015"
     CDS             complement(871..>2107)
                     /locus_tag="VFI64_02015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HET7242094.1"
                     /translation="IHRFMTIEDQVDEVLKVKRSESVIIEQPYTISSDKTALDARKMM
                     QECGVSGLLVMKENNGELAGIITRRDIMFLDNMNTNITEVMTKDVVTVKTGITIEEAK
                     EILHKHRIEKLPVVDISKRVIGLITSKDILKMERFPLASKDKKGRLLVGAAVGVKGDY
                     LERAEALLEAGADVIVVDIAHGHSNNAINTVDMIKKAFSKCELIAGNVATGEGARDLI
                     NAGVDAVKVGVGSGSICITRIVTGSGVPQLTAVIDTVKVAKEFDIPVISDGGIRTSGD
                     AIKALAAGASSVMVGSIFGGTDESPGKTIVRHGKKFKMYRGMASFYASLGRKYREEGA
                     EVIDAEDPNDYIPEGVEAMVPYKGSVTDIIKQLVGGLRSGLSYCGAKDIQQMQMNAEF
                     VKITPAGYIESQPHDVDLM"
BASE COUNT          581 a          482 c          356 g          688 t
ORIGIN      
        1 aatattcgcc ttgctccccg ggttcataat tggagttaaa atatctgtcg cattagtctt
       61 aacactacca tctaatgatg cagccctcgg tatatttgag tcgtatattg ataacgttcc
      121 tataattaca aatactattc ccgaaattat cagaataaag aacgtttttt cacgcgacat
      181 tggaatgtcc catacaggtt gctaattaat gtattcaaat aaaaatatat ttcattttaa
      241 tcagtcgcga gcttttgagg aattaatatt ctggcgttca gtcgataatt ctcaacaaaa
      301 aaccaggttg tcttgagacc gagtccagga ggtgtgtcta gcgaatggtc ttttgtcgaa
      361 cgactcggac aataagaaca ctaataatga cctaaacatt cttagtcaat gtgtctgcat
      421 ctgtgtcttg gagcaacttt acgtaatata cccacaggtt ttgatagcct gttcgttact
      481 ttaaattatg tgcaatctct tcgcacatga ctcatgatag taactcctgc cgtgaccaca
      541 gcttacgata ctatcatccg aagtaaattc aatatcgcaa aaatgacatc taccgtcttg
      601 ctttcgtttg atgatagaat aaattcgacc ccgagtgtag ggattggaag tatcaattat
      661 agcgtttggg gccataacat gcatctaatg aactgtcttg catataagtt actatggaaa
      721 ctatgtttgt tgatatgaat gtattatcca atcagttttt caaatcctgg gctgcgtttt
      781 gcctcaatac ttattcagtc gtagaacaaa aaactatcta tctcctgcac tgtcattatc
      841 ttatgggtcg taatggattg tcaacaaatt ctacattaga tcaacatcat gtggttgact
      901 ctcaatataa ccagcaggtg ttattttcac aaattcagca ttcatctgca tttgctgtat
      961 atctttggca ccgcagtaac ttaaaccaga ccgaaggccg ccgacaagtt gttttataat
     1021 gtcagtgacg ctgcccttat atggaaccat ggcttcaact ccctccggga tgtagtcatt
     1081 aggatcttcc gcatcgatta cttcggctcc ttcttctcga tattttcttc ccaaggaagc
     1141 ataaaatgat gccatgcctc tgtacatctt gaattttttt ccatgcctta ctatggtctt
     1201 gcctggactt tcatcggtcc ctccaaatat gcttccaacc attacagagg atgcaccagc
     1261 agcaagtgcc ttaatagcat ctccagacgt ccttattcca ccatccgaaa taacaggtat
     1321 atcgaattcc ttagcaactt taacagtatc aataacagca gttaattgag ggactcctga
     1381 tcctgtgact atgcgagtta tacaaatcga accagaacca actcccactt ttacggcatc
     1441 tactccagca ttgatcaaat cccttgcacc ttccccagtc gcaacatttc cagcaattaa
     1501 ttcgcatttt gaaaatgcct ttttaatcat atctactgta tttatagcgt tattactgtg
     1561 gccatgcgcg atgtcaacta ctataacatc tgcacccgct tcaagaagtg cctcagccct
     1621 ctccaggtaa tcgcccttta caccgaccgc ggctccaact agtaacctac ccttcttgtc
     1681 cttggacgct aagggaaatc tttccatctt taaaatgtct ttactggtaa taagaccaat
     1741 tacccttttt gaaatatcca ccacgggaag tttttcgatc cgatgtttat gcaagatttc
     1801 ttttgcttct tcaatagtta ttccagtttt gacggtgaca acatcttttg tcatgacttc
     1861 agtgatgttt gtattcatgt tgtccagaaa cattatgtca cggcgggtta taattccggc
     1921 aagttctcca ttgttctctt tcatcacaag caagcccgag accccgcact cttgcatcat
     1981 ttttctagca tctaatgcag tcttatcaga cgaaattgtg tatggttgtt ctataattac
     2041 agattcggat cttttcactt taagtacttc gtcgacttga tcttcaattg tcatgaacct
     2101 atgaata
//
LOCUS       DASSIK010000108         2358 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1397116, whole genome shotgun sequence.
ACCESSION   DASSIK010000108 DASSIK010000000
VERSION     DASSIK010000108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2358)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2358)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2358
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1397116"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..339
                     /locus_tag="VFI64_02020"
     CDS             <1..339
                     /locus_tag="VFI64_02020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242095.1"
                     /translation="YTAFQNRLKFRVIPEARFLQTRELGSGHHFYEFGASMRTLGYHP
                     LFALGRFVKYFSSGRPIGRLGAIHMLYHYLSYKPKQEGYDSMHDAEIRKDIRMAQAKR
                     IRRYIGLKSH"
     gene            complement(468..1646)
                     /locus_tag="VFI64_02025"
     CDS             complement(468..1646)
                     /locus_tag="VFI64_02025"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase C-terminal domain-containing
                     protein"
                     /protein_id="HET7242096.1"
                     /translation="MTLRYDPTQRGIISLKSIGNDVVKNRRKPYPTSRDVETNVRNVV
                     KRTIAKYKPERISVALSSGVDSNVILSLIRDEFPKLEINCVTVSFDESTEAHVAKKIA
                     ENNSSNFHNVIVENPLRELPYLISLVKEPKWNIYQYYFIEKSAHFSNVLFTGDGGDEL
                     FGGYIFRYEKFLASYSVNLTWQDRTRNYLECHERDWVPDQDEIFGVKLHFDWDSIYSL
                     LRPYFDNDLDALDQVFMADYHGKLMYDFVPTNKKFFDHFNLMGIAPLLDKSIIETSFK
                     MPPSLKYDHVAKKGKIPLRKIIANHDIDRVSDAKIGFGMDLKALWIRVAKEMVTSNLD
                     KARIFEDKLIKKEFYYRSLKRIDDTLDVRYISKLLHLLSLEIWYKMFVTFEISSKSSL
                     "
     gene            2034..>2358
                     /locus_tag="VFI64_02030"
     CDS             2034..>2358
                     /locus_tag="VFI64_02030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242097.1"
                     /translation="MSKINKEDRNYLFVLFVIAIIVRLIPELIAYPYPIGYDVVNYYI
                     PVTTNFQNNWNMVSDQFPLYVLMLHLITIVTNLDPATVVRLAAILIFGFFSISVYQLA
                     KKILRL"
BASE COUNT          724 a          443 c          393 g          798 t
ORIGIN      
        1 tatacagcgt tccaaaaccg tttgaagttc agagtgatac cagaagcccg ttttcttcaa
       61 acacgagagt taggatctgg tcatcatttt tacgaatttg gcgccagtat gcgaactcta
      121 ggataccacc ctctttttgc attaggcaga tttgttaaat atttttcttc tggaaggcca
      181 attggcaggt tgggagcaat tcatatgctt tatcattact tgtcatacaa acctaaacaa
      241 gagggatatg atagtatgca tgatgcagag attcgaaaag acattaggat ggcgcaagca
      301 aagagaataa gacgctatat aggattaaag agtcattgat caagacatat acgtattgaa
      361 attgttcatc ataatttggc taattggaag tgcaggcatt gatgtaatcc gatcactgcc
      421 ctagaagcaa attcaaagta aatgttgcag gtagacgata atttatccta caatgagctt
      481 tttgaactaa tttcaaaagt aacaaacatc ttgtaccata tttctagact caataaatgt
      541 agcaatttgc tgatgtatct tacatccaaa gtgtcatcta ttcgtttcaa agatcgataa
      601 taaaactcct ttttgattag cttatcttcg aatattcgag ctttatctaa gttcgaagtc
      661 accatttctt tcgccactct tatccagaga gccttaagat ccattccaaa gccgatcttt
      721 gcatcggaaa ccctatcaat gtcgtgattg gcaataattt ttcttaatgg aattttgcct
      781 tttttagcta catgatcata ctttagtgaa ggaggcattt tgaatgacgt ctctatgata
      841 gacttgtcga gcaatggtgc aattcccatc aaattaaagt gatcaaaaaa ttttttgttt
      901 gttggaacga agtcatacat aagtttacca tgataatctg ccatgaatac ctgatcaagt
      961 gcatctagat cgttatcgaa ataaggcctg agtagggaat atatcgaatc ccaatcgaaa
     1021 tgcaatttaa cgccgaatat ttcgtcctga tctggaaccc aatctctctc gtgacattca
     1081 agataatttc gtgtcctgtc ttgccaagtt agatttacac tataagaagc caaaaatttc
     1141 tcgtacctga atatatatcc cccgaatagt tcatccccac cgtcccctgt gaacaagaca
     1201 ttcgaaaaat gagctgattt ttcaataaaa taatattgat agatgttcca cttcggttcc
     1261 ttgactaaac taattaggta gggtaactct cttaacggat tctcaacaat tacgttatga
     1321 aaattggatg agttattttc agctattttt tttgcaacgt gtgcctccgt cgattcatca
     1381 aaactaacag tcacacaatt tatttcaagt ttagggaact catctcgtat taacgacaaa
     1441 atcacattgg agtcgacccc cgagcttagc gctactgaaa tacgctcagg cttatatttt
     1501 gctatagtcc ttttgacaac atttcgaaca tttgtctcaa cgtctcttga tgtcgggtat
     1561 ggttttcttc tattcttgac tacatcattt cctatactct taagagatat aatgcctcgt
     1621 tgtgtgggat catatcgaag cgtcataata ttgcaaatgt tgatcaatgg atttttcttt
     1681 tcgtaacttc aataaaacat ttgagtcaaa attttcgatt gacaaatcac gataaattat
     1741 agtaattaat tagccaaatc tccaatattt ttcaactact atttaattta cacgccacga
     1801 tatgtgccat gaattggtgt cccaaaaata atttacccat ctgcttcaat gataatcatt
     1861 atgatttatg gtatttctga tttttactga tttttactga ttttcccaat tatcgaattt
     1921 tttaacgtga ataatatagt taagtaaatt tccatttagg tgtgatctta gcctgaacaa
     1981 atacttaaaa ttaacaatca tttaaggatg gattctgcgt gcggattcag tcgatgtcga
     2041 agatcaataa agaggataga aattacctat tcgtgctgtt tgtaatcgca atcatagtta
     2101 gattgattcc agagcttatc gcctacccgt atcccatagg atatgatgta gtaaattatt
     2161 acattcccgt tactactaat ttccaaaata attggaatat ggtttccgat cagtttccac
     2221 tatatgtttt gatgctccat ctgataacca ttgttactaa cttagatcct gcaactgttg
     2281 tacgccttgc cgcaatcctg attttcggat ttttttcaat atcagtttac cagttagcta
     2341 agaaaatact gcgtctgg
//
LOCUS       DASSIK010000109         2588 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_906745, whole genome shotgun sequence.
ACCESSION   DASSIK010000109 DASSIK010000000
VERSION     DASSIK010000109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2588)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2588)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2588
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_906745"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(158..1900)
                     /locus_tag="VFI64_02035"
     CDS             complement(158..1900)
                     /locus_tag="VFI64_02035"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthetase B"
                     /protein_id="HET7242098.1"
                     /translation="MLITYVCVYTSGGNEEMCSIAGILSKRGIDVADSITDMLTCMPN
                     RAPEGSGILLGDDIMFFKSLRDLSQNHFSGEFALGHSRLAIVGGSSGRQPLQSCDGRF
                     ILVHNGEIYNYKEIRDELSATHKFVTDSDSEVIVHLIEQYIKAGNNFVNAIKKTVAML
                     DGIFAFAIRDRETGQIGLARDQLGVRQLYYTENGDVFAFASERKSLLRIVPKGDIKRV
                     MPGMLVLIEGNFKLKEYEMIKPLSTGSRRKKISYRTRDEAISAYQKALLGSMKKRTMD
                     LDTIGIIFSGGIDSVLVAYLAKSMVKKVVGYCGGLKGSTDIQFAKDIAKRLNLPLRIN
                     ELTLDEVESMLPRIVDVIEDNNVGQVEVAIPIFAAVETAHQDGMRVMYTGQGVDELFG
                     GYSWYPRIVEREGYRILGKHMADDLSLLYKETLEREDKIAMFHSVEIREPYLDNEVVR
                     VALRTNLELNVTGKNDVYGKRVHRDLAIKLGIPADIAYRKKEAAQHGSGIHDALDIIA
                     RNNGYDPSTVPEYYLKELVSREKIGSSQRYGYNYGDLSLWAVPPHIQLYLDNLGYSRR
                     PAIEIRRSKVADHN"
     gene            2274..>2588
                     /locus_tag="VFI64_02040"
     CDS             2274..>2588
                     /locus_tag="VFI64_02040"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase family protein"
                     /protein_id="HET7242099.1"
                     /translation="MKINKHDVNPALLVIDMQNGFVSKGGSYDLMGIDTSTYLKIVPN
                     IKSLIQVCRSSKIPIFFTQAVREGSGIDLLTRTHRILPKSREERIKMRPICVRGTWDA
                     DIV"
BASE COUNT          785 a          559 c          452 g          792 t
ORIGIN      
        1 tgcaaagaaa gattgcgaaa attgatagtt caaagaggtc tactaggtct aagacaacag
       61 gtaagaaaat aggtcgtaat aagaaggcat ctagtagtca gaaatcaaga atgaagagtg
      121 gtcaaaagaa aagtagccag caagtatgtg agtttaatca attatgatcg gcgactttgg
      181 accgacggat ttcaattgcc ggtctcctcg aatacccaag gttgtctaga tatagctgaa
      241 tgtgtggagg tactgcccac agggaaagat caccgtaatt gtatccgtac ctttgcgagc
      301 ttccaatctt ttctcgactc actagttcct tcaaataata ttctggaacc gttgatggat
      361 cataaccatt atttctagca ataatgtcta aagcatcgtg aataccagaa ccatgctgtg
      421 cggcttcctt ctttcgataa gcgatatctg caggaatacc caatttaatg gcaagatctc
      481 tatgtacacg cttgccatag acgtcatttt tcccagtaac gttaagttca aggtttgtac
      541 gtaatgctac tcgtactact tcattgtcaa gataaggttc tctaatttct acgctgtgaa
      601 acattgcaat cttgtcttcc ctttctagcg tttccttgta gagtaagctt agatcatctg
      661 ccatatgttt acctaatata cgatatcctt cacgttccac aatcctaggg taccaagaat
      721 atccaccaaa gagttcatca acaccttgac ccgtgtacat taccctcatt ccgtcttgat
      781 gggcggtctc cactgcagcg aagatcggga tagcaacctc gacctgacca acattattgt
      841 cctctataac gtctactatt cgaggtagca tcgattcaac ctcgtctaaa gttaattcat
      901 taattcgaag aggcaagttc aatctctttg caatatcctt cgcaaattgg atatcggtag
      961 agcctttcaa tccgccacaa taacctacta ctttcttcac catgctcttc gcaagataag
     1021 ctactagaac actatcgatt cctcccgaaa agattattcc aatcgtatcg agatccatag
     1081 ttcgtttttt catggatcct aatagtgctt tttggtaagc agatattgcc tcatccctag
     1141 tacgatagga aattttcttt cttctagagc ctgttgacaa cggcttgatc atctcgtatt
     1201 ccttcagttt gaagttaccc tcgatcagaa ctaacatgcc gggcatgact cgttttatat
     1261 ctcccttggg cactattctg agcaaggact ttctctcaga cgcaaaagca aaaacatcac
     1321 cgttttcagt ataatagagt tgacgcaccc caagttggtc tcttgctaat ccaatttgcc
     1381 ctgtttcccg atccctgatt gcaaaggcaa atataccgtc cagcatagca accgtttttt
     1441 taatcgcatt tacaaaattg ttacctgcct tgatatattg ttctatcaag tgaactatta
     1501 cttcactgtc actatctgta acaaacttat gagtggccga tagttcatct cgtatttctt
     1561 tataattata aatctctccg ttatgtacca aaataaatct cccatcacaa ctttgtaacg
     1621 gttgtctacc ggaactaccc ccaactatcg ccagtctact atggcccaat gcaaattcac
     1681 ctgaaaaatg attttgggaa aggtcgcgta agcttttaaa gaacataatg tcgtctccaa
     1741 gtagtattcc tgaaccttcc ggcgctctat tgggcataca agtaagcatg tcagtgatac
     1801 tgtcggcaac atcgattcct cgtttactaa gaattcccgc tatactacac atctcttcat
     1861 tcccaccact tgtgtatacg catacatacg ttattaacac tcgcctccat cttgatctta
     1921 atgttcaatt tggacatgag ataaaatcta agttaatgaa gcggcacggt cccttatgaa
     1981 agttactttg tataacaaaa aaatgacgta gaatcacaaa aaaattgaga atttcaattc
     2041 ttagctaatt cccttgcaag attattacat tgagtttcca tctaggggat atttttgaat
     2101 aaaatggagt atatagagta tatttgctaa acccttgtga ataaagagat tccacaaagg
     2161 tactttgcga ggacctattt ttgcaattca aaactatatt ccactataaa atagacaata
     2221 gatccgatta ctttattaaa agatctttga atattttgaa ttagtgatat ttcgtgaaaa
     2281 tcaacaaaca tgatgttaat cctgctcttc tagtcattga catgcagaac gggttcgtta
     2341 gtaaaggggg atcttatgat cttatgggaa tcgatacatc cacttatctc aaaatcgttc
     2401 ccaatattaa gagccttatt caggtttgta gaagttctaa aatacctatt ttttttactc
     2461 aggcggtacg agaaggatca ggaatagatc tactaacaag aacacataga atcctcccca
     2521 aatcacgaga ggagagaata aaaatgagac caatatgtgt gaggggaaca tgggacgccg
     2581 acatagtt
//
LOCUS       DASSIK010000110         2363 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1398370, whole genome shotgun sequence.
ACCESSION   DASSIK010000110 DASSIK010000000
VERSION     DASSIK010000110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2363)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2363)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2363
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1398370"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            226..471
                     /locus_tag="VFI64_02045"
     CDS             226..471
                     /locus_tag="VFI64_02045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HET7242100.1"
                     /translation="MINNEESSAKVIDVRGLYCPEPVFRTKIEIERLTIGDKLKVIAD
                     DPESEEDISRWVKRTGHELIYINKNAKDLEFLIKKAK"
     gene            472..1470
                     /locus_tag="VFI64_02050"
     CDS             472..1470
                     /locus_tag="VFI64_02050"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase family protein"
                     /protein_id="HET7242101.1"
                     /translation="MTSTSGPDLLQRIGGTPVVELSKYSTNKIKFYAKLEWYNPFGSV
                     KDRPAYWMVKEAEKSGLLKKGKSIIIEPTSGNTGIALTGIATSMGYKVEIVIPEKVSE
                     ETKFILRRLGATIHETSDDLCPRVGAGTDQSIALAAAIAKPRPDIYFMPNQYENEANF
                     LAHYEGTGPEIWEQTNGKVTHFFSGCGTGGTITGTATFLKEKNNNIKIIAIEAQQNHI
                     LQGLRNFKESAMPELFKRRQKAVDQWFTASNKESLNYVKDLLNREGLFVGPSSGSVMS
                     AMIKVSQSIDEGILVGIFADDGRKFKSLYSQQNLLSENEYKEAESRLPSIGYFQDS"
     gene            complement(1487..>2363)
                     /gene="trxB"
                     /locus_tag="VFI64_02055"
     CDS             complement(1487..>2363)
                     /gene="trxB"
                     /locus_tag="VFI64_02055"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004791 - thioredoxin-disulfide reductase
                     (NADP) activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HET7242102.1"
                     /translation="IYTSRAKLKTLLITGTLPGGQLMTTSEVENYPGFPNGIFGPELM
                     MNMRQQVERFGATIIDDEVTRVDFKAHPFLISTNSETYEALSVLACTGASPRKLGIQG
                     EQEFGGRGVSYCATCDGPFFKGEDIAVVGGGDTALEEATFLTKFGRSVKIIHRRNSLR
                     GSKILQEKALENSKIRFLWDHVVEGINGNKKIENIQIKSLKDGKKQTLSVGGLFVAIG
                     HEPNTSIFKDQLELDDKGYVVLKERTKTSVEGVFAAGDVHDFRYRQAVTAAGFGCMAA
                     LDVEKWLGEQKWWKE"
BASE COUNT          734 a          487 c          477 g          665 t
ORIGIN      
        1 tcagacctaa acaaaatgac tttttcagga gatcctaaac gtaaaatatt aataaagtct
       61 acgtggcttc cgaagaatca gttaagcaaa atataaataa acaccccatt ttttacagta
      121 ttcttcagat gaggccattt ctagttcggt atttttgtag tcacggttag ccataaacga
      181 ttaatataaa tcgctctaag ctacaataaa tcagggtatt tcgaaatgat aaataacgaa
      241 gaatcatcag caaaggttat tgacgtcagg ggtctttatt gcccagagcc agtttttaga
      301 accaagattg agattgaaag acttacaata ggtgataaac tgaaggtaat agcagacgac
      361 cctgaatcgg aggaggatat atcaagatgg gtaaaaagga ctggtcatga gctcatatac
      421 attaacaaga atgctaaaga tttagaattc ctaataaaga aggccaagtg aatgacgtcc
      481 acgagtggac ctgatctact tcaaagaata gggggaaccc cagtagttga attatcaaaa
      541 tactctacca acaaaattaa gttttatgca aagttagaat ggtataatcc ctttggttcg
      601 gtaaaggacc gtcctgcata ttggatggtg aaagaagcgg aaaagtctgg cttactgaag
      661 aagggcaaga gtatcattat cgagccgacc tctggaaata caggaatagc tctcaccggt
      721 atcgctacct caatgggtta caaagtagag atagttattc cagaaaaggt aagtgaagaa
      781 accaaattta ttttgcgaag gttgggagcg accattcacg aaacatccga tgacctctgt
      841 cccagagtgg gggccggaac tgaccagagt attgcccttg cggcggcgat agcaaaacct
      901 agacctgaca tttatttcat gcccaatcaa tatgagaatg aggcaaactt cttagctcac
      961 tatgaaggta caggtccaga gatttgggaa cagacgaatg gaaaagtgac tcacttcttt
     1021 agtggttgtg gtaccggagg cacgatcact gggactgcca cgttcctaaa ggaaaagaac
     1081 aataacatca agatcatagc catcgaggca caacaaaatc acattctcca aggtttaaga
     1141 aactttaaag aatccgcgat gcctgaattg ttcaaacgaa ggcagaaagc tgtggatcaa
     1201 tggttcacag cctccaacaa agaatcactt aactacgtga aggatttgtt aaatcgagag
     1261 ggtctatttg taggtccttc ctcggggtct gtgatgtccg ccatgattaa ggtttctcag
     1321 tctattgacg aaggcatact cgtcgggatc tttgcggacg atgggagaaa attcaagagt
     1381 ctatattcgc aacaaaactt gctttcagaa aatgaataca aagaagcaga gagtagacta
     1441 ccttctatag gttactttca agattcttaa cgagcaatta ctgtttctat tctttccacc
     1501 atttttgttc gcctagccat ttttcaacat ctaatgcagc catgcaacca aagccagctg
     1561 ccgttacggc ctgtcgatat ctaaagtcgt gaacatctcc ggcagcaaat acaccttcta
     1621 cactagtctt tgtgcgttcc tttaagacga cgtatccctt atcatcgagt tcaagctgat
     1681 ctttaaatat cgatgtattt ggttcatgac caatagcaac gaagagtcct ccgacagaga
     1741 gggtttgttt tttcccatct tttaaactct taatctggat attttctatt ttcttgttac
     1801 cattaattcc ttcgacaaca tgatcccaaa gaaatcggat ctttgaattt tcaagcgcct
     1861 tttcctgcaa gattttgctt ccacgtagtg aatttcttct gtgtatgatc tttaccgatc
     1921 gcccaaattt tgttagaaag gttgcttcct ctaaagcagt atctccgcct ccaacaactg
     1981 caatatcctc acctttaaaa aatgggccat cgcaagttgc gcaatatgat actcctctac
     2041 caccaaactc ctgttctcct tgaattccca acttgcgtgg agatgctcca gtacatgcca
     2101 agactgaaag tgcttcataa gtttctgagt tagtagatat caagaaggga tgcgccttga
     2161 aatctactct tgtcacttcg tcatctataa ttgtggcacc aaacctttct acttgttgtc
     2221 tcatgttcat cattaattca gggccgaaaa ttccgttggg aaagccagga taattctcaa
     2281 cttcgcttgt agtcatgagc tgtccaccag ggagagttcc agtaattaga agtgtcttaa
     2341 gctttgcacg agaagtatat att
//
LOCUS       DASSIK010000111         3843 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_318389, whole genome shotgun sequence.
ACCESSION   DASSIK010000111 DASSIK010000000
VERSION     DASSIK010000111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3843)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3843)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3843
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_318389"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..104)
                     /locus_tag="VFI64_02060"
     CDS             complement(<1..104)
                     /locus_tag="VFI64_02060"
                     /inference="COORDINATES: protein motif:HMM:NF013999.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein"
                     /protein_id="HET7242103.1"
                     /translation="MPDKVTQEEVYSALRKCMDPEIPVNVVDLGLIYGV"
     gene            complement(143..1228)
                     /gene="mtnA"
                     /locus_tag="VFI64_02065"
     CDS             complement(143..1228)
                     /gene="mtnA"
                     /locus_tag="VFI64_02065"
                     /EC_number="5.3.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF004326.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046523 -
                     S-methyl-5-thioribose-1-phosphate isomerase activity
                     [Evidence IEA];
                     GO_process: GO:0019509 - L-methionine salvage from
                     methylthioadenosine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S-methyl-5-thioribose-1-phosphate isomerase"
                     /protein_id="HET7242104.1"
                     /translation="MIGPYQLLGHNKKYVMDNSLLTVSWEDGKVVMIDQTKLPKKLEY
                     VKYTKYQDIAKAIKRLIIRGAPAIGVAAAFGMCLASFQSKAGSTAELLSDMEIAYTLL
                     RGTRPTAVNLVWALDLVMKKAREGNSVNQIRKGILDYSLKIAQDDVITNKKLGKYGAE
                     LINDGEVVLTHCNAGSLATVAYGTALGVIRAARESGKEVRVIATETRPVMQGSRLTAF
                     ELKHDGIDVCLIPDTAVGYVMSQKMISRVIVGADRVLRTGHVFNKIGTYQVAVMANRH
                     MIPFYVAAPMSTFDLESDIGDIIIEQRDAKEILQVGNRVITPKGVDVLNPAFDITPPE
                     LIAGIITEKGILQPPFKKNIKKNIKGR"
     gene            complement(1280..1543)
                     /locus_tag="VFI64_02070"
     CDS             complement(1280..1543)
                     /locus_tag="VFI64_02070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242105.1"
                     /translation="MLLNKKVIFYVILGFEIIVQSEFQIAFCENQSMKEKTYVNIIQT
                     MSIWIVERVVEPHSHSSSGTCQLSFIGGSESSNFFRVSVNIFF"
     gene            complement(1559..2611)
                     /locus_tag="VFI64_02075"
     CDS             complement(1559..2611)
                     /locus_tag="VFI64_02075"
                     /inference="COORDINATES: protein motif:HMM:NF014010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate uptake regulator PhoU"
                     /protein_id="HET7242106.1"
                     /translation="MLFSENSEVRKIQYTGRSTYILSIPKKWISEMHLHAGDSVTIVR
                     EANHSLSIFPNTVRAPIASGEVHSLVAKEDKENTLKRKVVSMYLTGYNVINLKSKSGR
                     IYPHQREAIREVVRRNLVGTEIIAESSDIMTIQVLSSLPELSVKTAVRRMFLIGTSMH
                     KDAMAALSEDNKELAMAVVKSDDEVDRFSLYILRNLVIASQNERILNEIGLKSPADCI
                     SYHVAVKSIERIADHATGIAVKSMKIGEKLPQELFEKIQEMSQMSLIILNDSVEAFLR
                     KDYYLADSIVDRSVNVRVIEEEIISLLDREKVRDYNLVNIKLILEDIRRTAEHSSDIA
                     EAALNQTIGEIIEPRL"
     gene            3017..>3843
                     /locus_tag="VFI64_02080"
     CDS             3017..>3843
                     /locus_tag="VFI64_02080"
                     /inference="COORDINATES: protein motif:HMM:NF013347.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006306 - DNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methyltransferase"
                     /protein_id="HET7242107.1"
                     /translation="MSSSRKYFGIIGKKLHSLAKAELVSLFKTYQARSIQYDHLSSVV
                     RAEGSAELERVANRAVLTKYFAEQIEEDEYEKRFHGKTFSCILFGTDKKIALEVLVKK
                     IKERASAKVCLNNPDFHVIIHPKENLVGIKKGPQRINWLLRRPNLRNFFHPSALDPRL
                     CRIMVNLARVRENDLILDPFCGTGGILLEAQKMGIRTIGLDVVKKMCGGAKQNGVEEV
                     VRCDSLKMPIKNLSAQAIVTDIPYGFSTHISPNILSHKLVSDLISRKIFAVKRMVVM"
BASE COUNT         1141 a          778 c          683 g         1241 t
ORIGIN      
        1 acaccatata tgaggcccaa atcaaccacg ttaactggaa tttcagggtc catacatttt
       61 cttaaagctg agtaaacttc ttcttgtgta actttgtccg gcatctctta ataaaagaag
      121 tttcagagat taaatacttt atctatctac cctttatgtt ttttttaata ttttttttaa
      181 aaggcggctg caaaatacct ttctctgtaa tgatccccgc aataagctca ggtggtgtga
      241 tgtcaaatgc tggattcaac acatctactc ctttaggtgt aattacgcga tttccgactt
      301 gtagtatttc ttttgcatct cgttgttcta ttattatatc accgatatca ctttccaagt
      361 cgaaagtaga cataggagca gcgacataaa aaggaatcat gtgtcgattg gccataacag
      421 caacttgata tgtcccaatt ttgttaaata catgtccagt tctcaacact ctatctgcac
      481 ccactattac tctactaatc attttttgag acattacata tcccacagct gtgtctggga
      541 ttagacagac atcaattcca tcatgcttca gttcaaaagc agtaagcctt gagccctgca
      601 tgactggcct ggtttcggtt gcaattacac gtacctcttt tccgctttcc cgtgcagccc
      661 gaatgacacc aagagccgta ccatatgcga ctgtcgcaag agaacctgca ttacaatgtg
      721 tcaagactac ttctccatca tttatcagct ctgctccgta cttccccagc tttttgtttg
      781 tgataacatc gtcctgagca atctttaaag aatagtcaag tatcccttta cgaatttgat
      841 taacggaatt cccttccctc gccttcttca taactagatc taaggcccat acgagattaa
      901 ccgctgtagg tctagttcct cttaggagtg tataagcaat ctccatatca gacagtaatt
      961 cagcagtact accagctttg ctctgaaacg atgcgagaca cataccaaag gccgctgcaa
     1021 cacctattgc tggtgctccc cgaataatga gacgttttat ggccttggcg atatcttggt
     1081 atttggtata tttaacgtat tcaagctttt taggcaactt tgtctgatca atcatcacta
     1141 cctttccatc ttcccacgac acagtgagaa gtgaattatc catcacgtac tttttgttgt
     1201 ggcccaataa ttggtaaggt ccaatcatta ttataataat ttactgcatc aaaataacac
     1261 aagcaatttg tgtatatgtt tagaagaaaa tattgacaga taccctaaag aaattggatg
     1321 attcagaacc cccgataaag cttaactgac atgttccaga ggaggaatgt gaatgtggtt
     1381 ctacaactcg ctccacaatc caaattgaca ttgtctgaat aatgttgaca tatgtttttt
     1441 ccttcatcga ttgattttcg cagaaagcta tttgaaattc agattgaact ataatttcaa
     1501 atcctaatat cacatagaat atgacttttt tgtttagtaa cattgcccga tgaataccct
     1561 ataaccgagg ctctataatt tcaccgattg tttgatttaa tgcagcttcg gctatgtcag
     1621 aggaatgttc tgccgttctt cttatatctt ctaaaattag ttttatattt acaagattat
     1681 aatcacggac cttctccctg tccaaaagag aaatgatttc ttcttcaata acccttacat
     1741 tgactgacct atcgactata ctatctgcca agtagtagtc ctttcgcaaa aatgcttcca
     1801 cagaatcatt aaggataata agagacattt ggctcatctc ttgtattttt tcgaataatt
     1861 cctggggtag tttttcacct atcttcattg atttgactgc tatacctgtc gcatgatctg
     1921 caattctttc tatgctcttc actgccacat gataacttat gcaatcagca gggcttttca
     1981 gacctatttc atttaatatc ctctcgtttt gggaggcaat tacaagattt ctaagtatgt
     2041 ataggctaaa tctgtcaacc tcatcgtcag atttgactac cgccattgca agctctttat
     2101 tgtcttctga tagcgcagcc atagcatcct tgtgcattga tgttccaatc aagaacatcc
     2161 ttctcacggc agtcttaact gacaactctg gtaggctcga aaggacttga attgtcatta
     2221 tgtcggatga ctctgcaatg atttcggtgc ccaccaagtt tcttcgaaca acctccctaa
     2281 ttgcctcccg ctgatgaggg tatatcctgc ccgactttga ttttaagttg atcacattat
     2341 acccggtcaa atacattgat acaacctttc gtttgagtgt attttctttg tcctcttttg
     2401 ccacgaggga atggacctca ccgcttgcta tcggtgctct caccgtattt ggaaatatcg
     2461 aaagtgaatg atttgcctca cgtacgatcg taacagaatc tccggcgtgg agatgcatct
     2521 cactgatcca ttttttaggg atggaaagaa tataagtaga acgtccagta tactgtattt
     2581 ttctaacttc gctattttcg gaaaataaca tcaatataga tcaccattga ctcgtaccct
     2641 taaacatgtt atgttaattt actatataga tctatatagc cagtacattt tgtaaccaag
     2701 ctgtaataag aaaattgtat ggcctcctgt ccctaaagtt taattgctaa attaagacaa
     2761 attccattaa ttaatagaga agacctatag ataactctga ctagatgact gatatgtcct
     2821 ttatcaaata tcggatgatg agactaagaa aattaacaag aaacaagata tacgtgttag
     2881 tcagatattt gattttcctt tatcttggtt tcaagatgaa aattggatgg tattgaggaa
     2941 tagacaaatt ctaaaatgat tcttgaatgt tgttatttct tgatgtttat agttagatcc
     3001 taatcttgat attttcatga gttcttcaag aaagtatttt ggaataattg gtaaaaaatt
     3061 acactcattg gcgaaagctg agcttgtttc tcttttcaag acgtatcaag ccagatcaat
     3121 tcaatatgat cacttatctt ccgtagtcag ggccgaaggc tccgcagaat tagaaagggt
     3181 agcaaatagg gcagtactta cgaagtattt tgccgaacag atagaagaag atgaatatga
     3241 aaaaaggttt catggtaaaa cctttagctg catactattt ggaactgaca agaagattgc
     3301 cttggaagtt ctagtgaaaa aaatcaagga gagggcgagt gcaaaggtat gtttgaataa
     3361 tcctgacttt catgtaataa tccatccaaa agaaaatcta gtcggaatta agaaaggacc
     3421 acaaagaatt aactggctgt taagacgacc taaccttaga aatttctttc atccttcagc
     3481 tttggatccg aggttatgtc gcatcatggt aaaccttgca cgagttcgtg aaaatgatct
     3541 tattcttgat cctttctgtg gaactggagg gatcttactt gaggcccaaa aaatgggaat
     3601 taggacgata ggattagatg tcgtaaaaaa gatgtgtggc ggagccaaac aaaatggtgt
     3661 cgaggaagtt gttcgatgtg attcactcaa aatgcccatt aagaatttat ctgcacaagc
     3721 catagtgacg gatattcctt atggattttc tacgcatata tcacccaata tactctccca
     3781 caaacttgtt tccgacttga taagcaggaa gatcttcgca gtaaaaagga tggtagtcat
     3841 gtg
//
LOCUS       DASSIK010000112         2104 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_615375, whole genome shotgun sequence.
ACCESSION   DASSIK010000112 DASSIK010000000
VERSION     DASSIK010000112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2104)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2104)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2104
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_615375"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..205
                     /locus_tag="VFI64_02085"
     CDS             <1..205
                     /locus_tag="VFI64_02085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242108.1"
                     /translation="LGAVIPGTSTAYQITYSAEVTEYPGSENNLNTMIDSIELNLRGA
                     NVTAPSNLQDLDYFIHVYDGGVI"
     gene            212..1465
                     /locus_tag="VFI64_02090"
     CDS             212..1465
                     /locus_tag="VFI64_02090"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HET7242109.1"
                     /translation="MFCNSLTTANKIKTSVMFFVHTKQEVDRKEYSSHVLKQNQKRAL
                     LLSISMLAVTVFMFYLVNSNEVFATPIQNLGPNATTTNNSNSERSQELFDKVKNSVVR
                     IDTLVQYVNPRITVNDEPFLQEPSGSIGSGFVYDESGKIVTNYHVVQGAQAILVKFLN
                     GNGYKGTIVGVEPLIDLAVIQLDPSALYNEKIVPLPLASPSEIRIGTPVVAIGNPIGL
                     TGSMTEGIISQVGRIQKGLFFPDSWVGDLIQTDAPITHGNSGGPLLNFDGKVVGVNDR
                     GVIADTSSQSTEPNIGLAISSGTVKRVVDIIIANGSYDAPYLGILVSDIPAFFPEKVG
                     LSEAKGAYVLSVLPDSPSSRAKIESDNVIIKADNILIKDKADLINYIQTKSPGDNLAL
                     TIIDNNGVTKAYDLNLESMPAEFGG"
     gene            complement(1918..>2104)
                     /locus_tag="VFI64_02095"
     CDS             complement(1918..>2104)
                     /locus_tag="VFI64_02095"
                     /inference="COORDINATES: protein motif:HMM:NF025910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HET7242110.1"
                     /translation="GCVQVSKGNYLKAISFFDLALKIDPGNVQILINKGFALEEAGNP
                     EEAQKYYDAAIKAYLPQ"
BASE COUNT          642 a          395 c          433 g          634 t
ORIGIN      
        1 gctaggcgca gtgattccag gaacttccac ggcatatcaa attacttact cagctgaagt
       61 aacagagtat cctggatctg aaaataactt gaatacaatg attgattcaa tagagttgaa
      121 cctgagaggt gcaaatgtga ctgctccttc taacttgcaa gatctggact actttattca
      181 cgtctatgac ggaggggtga tttaagaatc aatgttttgc aatagcctca ctactgcgaa
      241 taaaataaag acttctgtta tgttctttgt ccacactaaa caggaggtag atcgtaaaga
      301 atattcgtca catgtgttaa aacaaaacca gaaaagggct ctcttgcttt ccatttcaat
      361 gcttgcggta accgtcttta tgttttatct tgtgaattcc aatgaagtat tcgccactcc
      421 tattcaaaat ttaggaccga atgctacaac aactaataac tcaaattcag aaaggtcaca
      481 ggaattattt gataaggtca agaattctgt ggtaagaata gacacacttg ttcagtatgt
      541 taatcctcgt attacagtga atgatgaacc attccttcaa gagccatctg gttcaattgg
      601 atcaggattc gtatatgacg agagtggaaa gatcgttact aattatcatg tagtacaggg
      661 tgcccaagcc atattggtaa aatttctgaa tggtaacggt tataaaggca ctattgttgg
      721 tgtagaacct cttatagacc tggccgttat tcaactggac ccttctgcct tatacaacga
      781 aaagattgtt cccttgcctc tagctagtcc ttcggaaatt agaattggaa ctccggtcgt
      841 ggctatagga aacccaattg gtctgacagg atccatgacg gagggcataa ttagtcaggt
      901 cggaaggatt caaaaagggt tatttttccc ggattcttgg gttggagact tgattcagac
      961 tgatgctcca attacccatg ggaattctgg tggtcctctg ttaaattttg atggaaaagt
     1021 tgttggtgta aacgatagag gggttatcgc tgacaccagc tctcagtcaa cagaacccaa
     1081 tattggacta gcaatatcat caggaactgt aaaacgggta gtagacatca taattgcaaa
     1141 tggtagttat gatgccccgt acttgggaat acttgtctca gatattcctg cgtttttccc
     1201 tgaaaaagtt ggtttaagtg aggctaaggg tgcctatgta ttgtcggttt tgcccgatag
     1261 cccatcctcc agagcgaaaa tcgaatccga taatgttata ataaaagctg ataatatatt
     1321 aataaaagac aaggctgatc tgataaatta catacaaact aagtcacctg gggataatct
     1381 tgcgttaaca ataattgata acaatggagt gaccaaggca tatgatttga atttggaatc
     1441 tatgcctgca gaattcggtg gctagttcct ggttgactaa gacaggatag tgggaaagat
     1501 ctctatcatc tacggcgcaa taatgtaagt cttttattat tggttacatc ttttaccata
     1561 ttacatgcct agatgttgcc gtcatttaat gcaaaaatac tgcgaaaatg aacctaacat
     1621 gaaatctgcg aatatacatt tcatctattg gaatttatgg ggctacgtct tgcaaacatt
     1681 tgatatggga tttcaaactg gttcgtgatc ccttagtcag taactatact ttcacgttca
     1741 atttacatcc acggtaacta caaagaacag ttctgcaatt gacgtttcaa ttagcataaa
     1801 attggtggat gatagtgctg catgcatttg gtttgatcca aacgaccgtg aagaatatga
     1861 aaacaggggt agtcagaatg ttctaagtaa cttgtaacgt aaggcattgc ccctagatca
     1921 ctggggcaag tacgccttga tagcagcatc gtagtatttc tgggcttctt ctggattacc
     1981 cgcctcttct aaggcgaacc ccttattgat caatatttgg acattaccag gatcaatttt
     2041 tagagctaaa tcaaagaatg atattgcctt caaataattc ccctttgata cttgcacaca
     2101 accc
//
LOCUS       DASSIK010000113         2008 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_415665, whole genome shotgun sequence.
ACCESSION   DASSIK010000113 DASSIK010000000
VERSION     DASSIK010000113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2008)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2008)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2008
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_415665"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(253..1821)
                     /locus_tag="VFI64_02100"
     CDS             complement(253..1821)
                     /locus_tag="VFI64_02100"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HET7242111.1"
                     /translation="MQEEKKHATSPWITLAILSGLGIIAMSAETMVLPAIPDFIADLD
                     ISYQDSSWILAVILVTGAVMTPIAGKLSDIYGKKKVLLVILAVYILGLLLGAIATNFL
                     SLITARVLQGIGISMFPIAFSILRDKFPPNKLAIAQGIFSSTLSGGAVIGLILGGSIV
                     EHFGWRATFLLLVPIAIILFAIIVKFVHVRELEQQMVSNKASEFCCRFTHVRQDILLT
                     ENTSTSTNTSNDSGESEQKLNKSIDIKGAITLSAAVISFLFTLQLLEKAGSNNFTQII
                     IFSFASIVSLILFITVEKKAPFPLIDFKLLKNRIILSANIINMTVGLTALMVVYQSLP
                     ILIRSPPPAGFGGEASSIAIVQLPYMVVSLIFSVASGFVVAKFGNLRPTTMGTIVTTF
                     GFFLLFMYHSSEASIAAVLVIVAAGLALMQIGSVNIVLTSTPKQFSGISLGMNLLIYL
                     IGSSVGPVIAGIYLQANQIIVESKTGSISASFPSPESFNLIFLTAALISVSSVAFSIL
                     LNRSMSRQKGVLIK"
BASE COUNT          665 a          384 c          360 g          599 t
ORIGIN      
        1 aaggctactt tcccaattgg gtaacatagc ttgtacacat ttttcattga cagcatcttt
       61 gcgttcaatc tagctatcaa agaatcgcca attatttaag ttgagggggt tctagataga
      121 gtacatgtaa ttcttgttta tttaattgca aaaatgtatt aagaatttta taattgattg
      181 aaaatgttta tgcacgaaaa ttggactatt actaaaataa tttaattttt taatctagtt
      241 gagatagaat ccttatttta ttaaaacccc cttttggcgc gacatacttc tatttagaag
      301 aattgaaaat gcgacagatg atactgaaat taaggcagcc gtaagaaaga ttagattgaa
      361 tgactctgga gaagggaatg aagctgaaat actacccgtc tttgattcta caattatctg
      421 attggcttgc aaatagatgc ccgcaatgac gggtcccacc gaggatccaa taaggtaaat
      481 taaaagattc attcccaacg atattccgct gaattgcttt ggggttgaag tcagaacaat
      541 attcacagaa cctatttgca ttaaagctaa tccagcagct acaattacaa gaaccgcagc
      601 tatagaagcc tccgatgaat gatacatgaa aaggagaaaa aagccaaagg tagtaacaat
      661 cgttcccatt gttgtaggtc ttagatttcc aaatttagct actacaaagc cagaggccac
      721 tgagaatatc aatgatacta ccatataggg cagttgaaca attgctatac ttgatgcctc
      781 accaccaaat cctgcaggcg gcggacttcg tattaaaata ggaagactct gatacacgac
      841 catcagtgca gttagtccta ccgtcatgtt aattatattt gcagaaagta ttatcctatt
      901 cttcaacaat ttgaaatcaa tcaatggaaa tggtgccttc ttctctacag ttatgaatag
      961 gataagtgaa acaattgatg cgaatgagaa aataatgatt tgggtaaagt tattcgaacc
     1021 agctttttcc aaaagctgaa gagtaaaaag aaaagagatt actgcggccg atagtgttat
     1081 ggcacctttt atgtcaatgc ttttgtttaa tttctgttca ctttcgccgc tatcgttact
     1141 agtatttgta cttgtacttg tattctccgt taataatata tcctgtctta catgagtaaa
     1201 gcgacagcaa aactcagagg ctttatttga aaccatttgt tgttctagct ccctaacatg
     1261 gacaaatttc acgattattg caaagagtat tatcgcaatt ggtaccaaca ataagaatgt
     1321 agcccgccat ccaaaatgtt caactatact cccacctagt atcaaaccta ttacagcgcc
     1381 cccagatagt gtagaactaa aaataccctg agctattgca agcttatttg gtgggaattt
     1441 gtctctcagg atactaaagg ctataggaaa catcgaaatt ccaattcctt gcaacactct
     1501 agcggtaata agagaaagaa agttagttgc aatcgctccg agcaaaagac ccaaaatata
     1561 aaccgccaaa attaccagca gaaccttctt tttaccatat atatcagata gtttgcctgc
     1621 aattggagtc ataacagctc ccgtgaccag aatcacggcc agaatccaag atgaatcctg
     1681 atatgagata tcgagatcgg caatgaagtc aggaatagct ggcagaacca tagtttcagc
     1741 agacatagcg atgataccca agccgcttag aattgcaagt gttatccatg gagaagtggc
     1801 atgcttcttt tcttcttgca tactcatact attatcgtga ttttacctca gacctataat
     1861 tgaatcgact gaaaacgcgc cggctccaag aacaataact attattgaat gaataagata
     1921 tcttgtatca atttcatatg aagctttgcg gacatcaatg ttcgctgcat tcatctttct
     1981 attttttatt atcacgtttg caatcata
//
LOCUS       DASSIK010000114         2783 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_615526, whole genome shotgun sequence.
ACCESSION   DASSIK010000114 DASSIK010000000
VERSION     DASSIK010000114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2783)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2783)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2783
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_615526"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..201
                     /locus_tag="VFI64_02105"
     CDS             <1..201
                     /locus_tag="VFI64_02105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242112.1"
                     /translation="PRCFKCYNRDVKRLIFTGKDTHRINSPLSNYRHAHDFGIHIDTR
                     LAEHQYVSKINQIQKYSNGTVI"
     gene            952..1365
                     /locus_tag="VFI64_02110"
     CDS             952..1365
                     /locus_tag="VFI64_02110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242113.1"
                     /translation="MANMIFDLIINTFVALFGVAYRWLEQNVINYVLNFVRGFEHVLV
                     MFVAVAFLLITVYIIVNHVKRLPKSYIIEIVDVFGERVNIESLRHSFTTYEAAKSYSQ
                     FYANLYGKQYKFRVVGRNRIADPFIKKINTPSNER"
     gene            1530..1682
                     /locus_tag="VFI64_02115"
     CDS             1530..1682
                     /locus_tag="VFI64_02115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242114.1"
                     /translation="MFGKSKCRLCGDKVRFVVRHLNEKHPETLSDRDVMKLKMQNIIA
                     KYFSEE"
     gene            1762..2088
                     /locus_tag="VFI64_02120"
     CDS             1762..2088
                     /locus_tag="VFI64_02120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242115.1"
                     /translation="MNSTNVKISIRIILPLLYNDKTRIERSLFIKTKEELHDTFGGKT
                     ELVPTTGSWKDEKGRLNEEPSAGFEVIADKTNETIKFLKNYKKKLKTRFKQDDIMITY
                     YPVNVI"
BASE COUNT          993 a          426 c          493 g          871 t
ORIGIN      
        1 ccgcgatgct ttaaatgtta taatcgtgat gtcaagcggc taatattcac aggaaaagat
       61 actcatcgta ttaattcacc tctaagcaat tatagacatg cacatgattt tggaatacat
      121 attgatactc gacttgcaga acatcaatat gttagtaaaa taaaccaaat ccaaaagtat
      181 agcaatggaa cagtaatctg acaatgaact gtgatttttg tagaaaacaa tctgaaaagt
      241 acaaatcttt ctattcgcca agcggcatcg acccacggga atatcatctt tgtattgact
      301 gtatcaagaa ttggcttagg gaatcagatc aaatatgatt caactactaa tggtatattc
      361 atattcgcta ttggtccgat aatgtaattc cctagttctg gatatgctga aagaaaatac
      421 aaagaaaaca gattagacaa gtatagggga gatacagtga atgtcaaaaa tccaaacacg
      481 atcgtgacta agttctaata cattgagttt caatatatta aattatagtc tacagcgatc
      541 tcgttatagt gtcctaagtt ctgctcgaaa taatagtaat tcactactct tgcagttgcc
      601 ttatggtgtc aaagtgctag tagtcatgtt tcgaagaggt attcttacat attgtgtttt
      661 tgtactgatc atactacatc gaaatcacaa tagtccaatt tcgataattt aaggggttag
      721 aaaaatatct agagtgggat taaagtaaag agatagactc caagccgata ttgacactta
      781 aaaacgatgg aatgatttta aacgtcatat catcgatgtt gatatttgtt tttatctaaa
      841 ccaatataac caattggtta ttttcatcat aaattatcat taggtcggct aaaagacatt
      901 tatggttctt tatataatat ccagtgaata gtatttgtac ggtgaggcaa gatggctaat
      961 atgatatttg atttgatcat aaatacattt gttgcacttt tcggagtagc gtacagatgg
     1021 ctggaacaaa atgtaataaa ctatgtacta aactttgtca ggggttttga gcatgtatta
     1081 gtcatgtttg tcgctgttgc ctttttacta atcacagtgt atataatagt aaaccatgtg
     1141 aaaagactgc caaagtccta catcatagaa atagtagatg tatttggcga aagggttaat
     1201 attgaaagct taagacatag ttttaccaca tatgaggcag ctaagagtta ttcacagttc
     1261 tatgcaaatt tatatggaaa gcagtacaaa tttcgggtgg taggccgtaa tagaatcgca
     1321 gatccattta tcaaaaaaat aaatacacca tcaaatgaaa gatagactgt ttaaacacta
     1381 agttacagaa aatcttaccg agttgaaata tatctccaac taagagattc attgggcttt
     1441 tcttaatgag catcaattcg agatatttcg gtcttaaaac acgcctaaac agcaacactt
     1501 tactatccca atatgcaaat ttcaaatgaa tgtttggaaa atcaaaatgt aggctatgtg
     1561 gggacaaagt tagatttgtg gtaagacatt taaatgaaaa acatcctgaa actttaagtg
     1621 acagggatgt catgaaattg aaaatgcaaa atataattgc aaaatacttt tcagaggagt
     1681 aatgccttcg aattggatac tattggtgca catagcgatt ttccttggaa tgtatgtctc
     1741 cgtgtaggaa tattctgata cttgaattct acaaacgtga agatttcaat aagaattatt
     1801 ttacccttgt tgtataacga taaaactcgc atcgaacgat cattatttat caagaccaaa
     1861 gaggaattac atgacacctt cggtggaaaa actgaactag tacctaccac gggaagttgg
     1921 aaggatgaaa agggtcgatt gaacgaggaa ccgtccgcag gctttgaggt gatagctgac
     1981 aaaacgaatg aaacgattaa attcttaaag aattataaga aaaaattgaa aaccaggttt
     2041 aaacaagacg atataatgat aacctattac ccagtcaatg taatttgacg attcaacaat
     2101 aatcgtcaac tagaatgtag ctagattaaa ggaccttgtt accgatcaca ttctcgaata
     2161 gttaattgct atacatctga caattcaata cacttcaaat agggattgat tatgcacgta
     2221 attgcaagaa ttaatatttt agctaagtca ttaatataac tcgttacttc cacaattaac
     2281 aatattcaag gcattgaaag gaatttggaa tatatttatt caaacaggaa agccgacgac
     2341 aacaaatttg ttgagatggt atttttttgc caaacagaag ataatttcta aattgcttat
     2401 agcaccttgt ctcttacttc aatgaattaa ctaatggatt gtgaacgtac tcagaatctg
     2461 gcggatgtca tattttgaac actgtttaga acgttttcaa atcttagaat aaaagcacct
     2521 gtaacagaaa ttaaagtaga attgtcatat tgattggaac ttcaactgcc agtttcgtcc
     2581 ttatgggttt tgctgaggtt ctgtgattag ttcaaaatta cgttcatgca tttacgaaag
     2641 tcttacatgt caattttgaa ctagaacaaa ttatccattt ttagattcat tgaaagcttc
     2701 gccagtggaa ttaggaaaat tattatgaaa attactgtaa tcgaaattat tgttatgata
     2761 aaaactgcaa ctaagtccat ttg
//
LOCUS       DASSIK010000115         2679 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1022803, whole genome shotgun sequence.
ACCESSION   DASSIK010000115 DASSIK010000000
VERSION     DASSIK010000115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2679)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2679)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2679
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1022803"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..451)
                     /locus_tag="VFI64_02125"
     CDS             complement(<1..451)
                     /locus_tag="VFI64_02125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242116.1"
                     /translation="MRKDHDIPTVLRLTPSFLFVSCIVYDRTTIFQNSNLEIFICCPG
                     LGKLLQRELNFNLRATERQCEEISRYFSFLNTESLIAGLKFAYNRQIAKDKGYLMLGR
                     KSKVKRETNMLTAGQAKWRLSNWKSMIKTYRDKGYSYPTISRIKKEIR"
     gene            complement(444..1607)
                     /locus_tag="VFI64_02130"
     CDS             complement(444..1607)
                     /locus_tag="VFI64_02130"
                     /EC_number="2.3.1.47"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008710 - 8-amino-7-oxononanoate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="8-amino-7-oxononanoate synthase"
                     /protein_id="HET7242117.1"
                     /translation="MKLEFRPDFIEQELTILKDEHLYRKLRIVQNKGSSAIIDGRKVL
                     NLNSNDYLGLSRHKSVISETTRAIEEISPCSSRLVGGNNSQLHDLESQLAVHRRTESS
                     LVFTSGYTAVIGALSTLANKETVIFSDESNHASIVDACRLSGGKICVFRHNDAEHLRE
                     LIQKQAKRRIVVTEGIFSVGGDMSNLKEICSIAKEFDALTVVDDAHGDFIYGPGGAGV
                     PSYFKVDGLIDLHVSSLSKALGCFGGYVATSEDIREYLINKSRQFIFTSALPAHLCVA
                     ANAALNIARKGNLQEVLFGNVNLFTGILRKHGFNIGNSRSQIIPLFIGSEEKAVRFAE
                     MLLENSIFVHPMRFPVVKKGSSVIRISLTASHTKTELITALRIIEEIAEELLA"
     gene            complement(1585..2526)
                     /gene="bioB"
                     /locus_tag="VFI64_02135"
     CDS             complement(1585..2526)
                     /gene="bioB"
                     /locus_tag="VFI64_02135"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004076 - biotin synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HET7242118.1"
                     /translation="MNKVISGESISFEEAGELLCSQDILSLAYSANVITRKFNGYSID
                     IESLLNAKSGKCPEDCSFCAQSSFYNTKISKYPLLPKQVVIVRAKEAERQGASSFCLV
                     CAYRSPPEEEFRQICDTIEALKKEVSIDFNASLGFMTSERARKLKSLGIKRYNHNLEA
                     SDSFFSQICKTHDFADRVKTAKIVKEAGLELCCGGIIGMGETVKQRIELAFALAALNP
                     DEVPINILIPNEGTPMAQIDTITPEEAIRTIAVWRFIMPKVILKLAGGREVHFSDNGR
                     MALRAGANGIISGGYLTTGGNEMSKDLNMIHEIGIPA"
BASE COUNT          717 a          613 c          476 g          873 t
ORIGIN      
        1 ttctaatttc tttttttatc ctactaatgg taggatagct ataaccctta tctctgtaag
       61 tcttgatcat cgatttccag ttggagagtc tccattttgc ttggcccgcc gtcagcatat
      121 tagtttctct cttaaccttg ctctttctcc ctaacatcaa gtaacctttg tcttttgcaa
      181 tctgtctatt gtaagcgaac ttgagtccgg cgataagtga ttccgtattt aggaaagaaa
      241 aatagcggct tatttcttca cattggcgct ctgttgccct taaattgaag ttaagctccc
      301 tctgcaataa ctttcctaag cccggacagc aaataaatat ttctaaattc gaattttgaa
      361 atattgtggt tctgtcatac actatgcaac taacaaacaa aaaggaaggc gtaaggcgaa
      421 ggacagtggg tatgtcatga tctttacgca agtagttcct cagcaatttc ttcaattatt
      481 cgtaacgctg ttattagttc tgtcttcgta tgcgatgcgg ttagtgaaat cctgattaca
      541 gaagaacctt tctttacaac gggaaatctc attgggtgaa cgaaaatact attctcaagc
      601 aacatttccg caaatctaac tgctttttct tcggacccta tgaaaagtgg aataatctgg
      661 cttcgggaat ttcctatatt aaatccatgc ttccttagta tcccagtgaa caaatttacg
      721 tttccaaata ggacctcttg taaatttcct tttcttgcaa tatttaacgc agcattcgct
      781 gcaacacaaa gatgggccgg caaagcggag gtaaatataa actgcctaga cttatttatt
      841 agatattctc gaatatcttc tgaagtggca acgtatcctc caaaacaacc tagcgccttg
      901 ctaagactac tcacgtgcaa atcgattagt ccatctactt tgaaatacga cggaacgccc
      961 gcaccccctg gtccatatat aaagtcgccg tgagcatcat caactaccgt tagggcatca
     1021 aattcctttg ctatgctgca tatttctttc aaattagaca tatctccgcc aacactgaag
     1081 attccttcag tgacaactat ccttcttttg gcttgtttct gaatcaattc ccgtaaatgt
     1141 tcggcatcgt tgtgtctaaa aacacatatt ttccctccgc ttaaacggca cgcatcaact
     1201 atgctggcat gatttgattc gtcactgaag atgactgttt ccttgtttgc gagggtgctc
     1261 agggcaccaa tcacagcggt gtatcccgag gtaaaaacca gtgatgattc cgtccttcga
     1321 tggacagcca actgggattc taaatcgtgt aattgggagt tgtttccacc gactagtcta
     1381 gaactacaag gtgatatctc ctcaatggcg cgtgtggttt cactaatcac agacttatga
     1441 cgagaaagcc caagataatc attagaattt aggtttagta cctttcttcc atcaattatc
     1501 gctgacgatc ccttattttg gacaattcgt aattttcgat ataaatgctc atccttcagg
     1561 atcgttagtt cctgttcaat gaagtcaggc cggaattcca atttcatgta tcatattcaa
     1621 gtctttactc atttcattcc cgccggtcgt aaggtaacca cctgaaatta tcccgtttgc
     1681 accagctctt aaagccatcc tcccattgtc gctaaaatgg acttctctac cacctgcgag
     1741 tttcaaaatt acctttggca tgataaacct ccaaactgca atagtcctga tcgcttcttc
     1801 cggtgttatc gtatctattt gtgccatggg cgtaccttca tttggtatca aaatattaat
     1861 cgggacctcg tcgggattca atgctgccaa tgcgaacgca agctcaattc tctgcttgac
     1921 agtttcaccc atccctatta tgcctccaca gcaaagctca agccctgcct cctttactat
     1981 cttggccgtt ttaactctgt ccgcaaaatc gtgggttttg catatttgcg agaaaaaact
     2041 atcggatgct tcaagattgt gattatatct ctttattcca aggctcttga gctttcttgc
     2101 tctttctgag gtcatgaacc ccagagaagc attaaaatct atgctgacct ccttcttgag
     2161 tgcttctatt gtatcacata tttgtcgaaa ctcttcttca gggggagatc tataggcaca
     2221 aaccaagcag aaactcgacg ccccttgtcg ttctgcttcc tttgcacgta caattaccac
     2281 ttgttttggc aagagagggt actttgatat ttttgtgttg taaaatgatg attgagcgca
     2341 aaacgaacaa tcctcaggac acttcccaga tttagcgtta agcaacgact ctatatctat
     2401 gctatatcca ttgaattttc ttgtaataac gttggccgaa tatgcaagcg aaagtatgtc
     2461 ttggctgcag agtagttctc cagcttcttc aaaggatata ctttccccgg aaataacttt
     2521 attcatacaa aaatcaataa ggtctgactc ttgcacgact taatttctat aatgccccta
     2581 cttaatcttt gtttgaatat tcagatcaac agaggatggg ttgtgtcatt tgatttttgg
     2641 tcttaaccat tatattttac tatttgatac ttccagttt
//
LOCUS       DASSIK010000116         4332 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_219964, whole genome shotgun sequence.
ACCESSION   DASSIK010000116 DASSIK010000000
VERSION     DASSIK010000116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4332)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4332)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4332
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_219964"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            222..419
                     /locus_tag="VFI64_02140"
     CDS             222..419
                     /locus_tag="VFI64_02140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242119.1"
                     /translation="MNMPGSVRAGLFLLVLGAICVGIGTYIDKAALSLYGFIIAVGGF
                     LLYFLSTILARRRSKRKNVTN"
     gene            532..1125
                     /locus_tag="VFI64_02145"
     CDS             532..1125
                     /locus_tag="VFI64_02145"
                     /inference="COORDINATES: protein motif:HMM:TIGR00405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor Spt5"
                     /protein_id="HET7242120.1"
                     /translation="MKGTDFVDEDNIEELEQASEDSETSPEPHTESNSNIHPDSQVLA
                     HTEIPISDSKFFAIRTTGGQEHVVVNMAQNKINSKKIPVRSILLLDSFKGYIIIEAPD
                     SNIAYEALAGIRHVKGQIRGELPYKDIEGYLVKRPVVTELNIDDTVEVIAGPFKSMKA
                     KITRVDYEKQEATVLLLDSPYQIPVTVDANYLKKIAQ"
     gene            1264..1746
                     /locus_tag="VFI64_02150"
     CDS             1264..1746
                     /locus_tag="VFI64_02150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HET7242121.1"
                     /translation="MGEKKSISALVSGGEASAGPPLGPALGPMGINVLQVVNTINEKT
                     MDFHGMKVPVRVEVDPETKKFTVEVGIPPTTALIAKEANITKGSGTAGKDYVGNITME
                     GIVKVARMKMDVSYGNDVRSVAKEIIGSCVSNGIKIDDKPAKEIYSDLLSGKYDHLFS
                     "
     gene            1854..3500
                     /gene="thsB"
                     /locus_tag="VFI64_02155"
     CDS             1854..3500
                     /gene="thsB"
                     /locus_tag="VFI64_02155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thermosome subunit beta"
                     /protein_id="HET7242122.1"
                     /translation="MSIQQGSAGGVPVLILKEGATQTKGRDAQKNNITAAKLIAEVVA
                     SSLGPRGMDKMLVDSLGDVTITNDGATILKEIDVQHPAAKMMVEISKATDNEVGDGTT
                     SVVVLAGALIEKAEELISKDVHPTIIVDGYRKSAIKAIEILSNLAQKIDGGDKSQLVR
                     IARTSMQTKLVSKESNELAETVVNAAIQVSEKFDSKYKVDIEDVKVEKKAGGSLRDTK
                     LIKGIVLDKEVVHGGMPKRVEKAKIALINSALEIEKTEFDAKINISSPDQMKMFLEEE
                     NKMLMTMVDKITKSGANVVICQKGIDDIAQHYMAKANILAVRRVKESDMTKLSRATGA
                     RIVSNLDDLSSKDLGLADLVEERKVETDKWVFVEGCRHPKSVTILIRGGSQRVVDEAE
                     RSIHDALMVTKDVLERPAIVAGGGSPESYTAGKLREWSNSLSGREQLAAEKFAESLEV
                     IPLRLAENAGMDPIDTLTELRSKQLKGSKWSGIDVRNGKVTDMSKLDIVEPLSVKEQI
                     IKSATEVASMILRIDDVIASSKSGGPPGGGGMPPGGMGDM"
     gene            complement(3761..4270)
                     /locus_tag="VFI64_02160"
     CDS             complement(3761..4270)
                     /locus_tag="VFI64_02160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242123.1"
                     /translation="MQRPARIALFRYFGLSPLEIEIIYNTLSSLFSVQEENVPPDSNY
                     LSFVEIQFPVSYSDSFFLLLGADRWNKIKGLLKEMKRRRGNKGLKVSLVFCDVSADPN
                     LKVVFSLKSGKGLSQYDNAIEKIEYLVDTLPIQIANSLVKTERVDCVYDESSLKWIPQ
                     NPHDGEDAR"
BASE COUNT         1479 a          752 c          945 g         1156 t
ORIGIN      
        1 atcctaccac atgattatca tgatcatcac caagcctgtt cattagatat gctccagcaa
       61 ctccaatgcc tacgactgct atcttcattt ggtaacggaa actgtactgg tttcagctag
      121 ataaaaagct tgatgcgctt acaactatca tagttccaac aatttcaatg cccattgatt
      181 tatagatgga taagtgcaat cgggtacgat taatgtccaa aatgaatatg ccgggatcag
      241 ttagagcagg gttgtttctt cttgtcctag gagcaatatg tgtgggaata ggcacgtata
      301 tcgataaagc cgcattgtct ctgtatggat tcataattgc tgtgggagga tttttgcttt
      361 actttttatc cacgattctt gcaagaagaa ggtctaaaag gaaaaatgtc acaaattgaa
      421 agtataactc ttgagcttgg ggtctaggtc gatgatctta agcttaccca aataagaaga
      481 tattcaagca aatttataaa ttgcactaaa taccgtagat tggatataag tttgaagggt
      541 actgattttg tcgatgaaga taacatagaa gaacttgagc aggcatctga agatagtgaa
      601 acttcgccag aaccacatac agaaagtaat tccaatatcc accccgactc tcaagtgctg
      661 gcccacactg aaataccaat ttcagattca aagttttttg cgatacgaac aacaggtggt
      721 caagaacatg ttgttgtaaa tatggctcaa aataaaataa actcgaagaa aatccctgtt
      781 cggtctatat tactacttga tagtttcaaa ggctacataa taatcgaagc tcccgattca
      841 aatattgcct atgaggcatt ggctggcatt cgtcatgtaa aagggcaaat tcgcggagaa
      901 ctcccttaca aggacataga ggggtatctg gtcaaacgac cagtagtcac cgaattaaat
      961 atagatgata ctgtagaagt tatcgcaggt ccattcaagt ctatgaaagc aaagattaca
     1021 cgagtcgatt acgaaaaaca agaggcaaca gtattactat tggactcccc ttatcagata
     1081 cctgtaactg tggatgcaaa ctatttgaaa aaaatagcac aataaacaaa ttcattcgcc
     1141 tatgtgtaat aaatttcggg attccacatt gcattgaagt agaatttcaa tctctccatt
     1201 tcttgttcca taaaacgaac tattaaatta aaggagggta tcaactatga agattattct
     1261 acaatgggcg aaaagaaatc catttctgca ctagttagtg ggggagaagc aagcgcagga
     1321 ccacctctgg gtcctgcatt gggtccaatg ggcataaacg tattgcaggt tgtgaataca
     1381 ataaacgaaa aaacaatgga ttttcacggg atgaaagtac cagtaagggt ggaagtagat
     1441 ccagaaacca agaaatttac cgttgaagtg ggaattcctc cgacaacggc attgatcgca
     1501 aaggaggcta atatcactaa ggggtcgggt actgcaggca aagattacgt cgggaatata
     1561 acaatggaag gcatagtcaa ggtagcgagg atgaaaatgg atgtgtctta tggtaatgat
     1621 gtcaggtcgg tagcaaaaga aataattggc tcttgtgtaa gtaacggaat aaaaatagac
     1681 gataaacctg caaaagagat ctattctgat cttttaagtg gaaaatatga ccacctattt
     1741 tcgtgacttc atccaaatat taacttctat cccgcgttag acaagttcca atagtaagtt
     1801 taaaatacct aaactttcca tttattttcg aaaatttagg agaaaagtga aaaatgtcaa
     1861 tacaacaagg ttctgctggc ggtgtaccag tattaatatt aaaggaaggt gcgacccaaa
     1921 ctaaaggtcg agatgcacag aaaaataata ttaccgctgc aaaattgatc gcagaggtag
     1981 tagcgagctc cttaggtcct cgtggaatgg ataagatgtt agtggatagc ctaggagatg
     2041 tgacaataac aaatgacggg gcaacaatcc tcaaagaaat tgatgttcag catccggctg
     2101 ccaaaatgat ggttgagata agcaaggcaa ctgataatga ggtaggagac ggtacgacat
     2161 cagtggtggt tctcgctggg gcattgatag aaaaggctga agaattgatt agtaaagatg
     2221 ttcatccaac cataatagtt gacggttata gaaaaagtgc gatcaaagcg attgaaatac
     2281 ttagcaacct tgcgcaaaag atagacggtg gagacaaatc ccaattagtt aggattgcaa
     2341 ggacttcaat gcaaacaaag cttgtctcaa aagagtcgaa tgagcttgcc gaaacagtgg
     2401 ttaatgcagc tattcaggta tcggaaaaat ttgacagtaa atataaggtc gacatagagg
     2461 atgttaaagt agaaaagaaa gctggaggct cattgaggga tacaaagtta attaaaggaa
     2521 ttgtattgga caaggaagtt gtccatggtg gaatgccaaa gagggtcgaa aaagcaaaaa
     2581 ttgctctgat aaattctgcc ttagaaatag aaaaaactga gtttgatgca aagattaaca
     2641 taagttcacc tgatcaaatg aagatgtttc tggaagaaga gaacaagatg ctgatgacaa
     2701 tggtagataa aattaccaaa tcaggcgcta acgtggttat atgtcaaaaa ggaatagatg
     2761 acatagcaca gcactatatg gctaaggcca acattttagc cgttcgtagg gttaaagaaa
     2821 gtgatatgac aaaactctcg agagcaacag gtgcgcgtat agtcagtaat cttgatgact
     2881 taagttctaa ggatttgggt ttggctgacc tggttgaaga aagaaaggtt gaaaccgata
     2941 aatgggtctt cgtggaaggt tgtcgacatc cgaaatccgt gacaatccta atcagaggag
     3001 gttcacagag agttgtagat gaagctgagc ggtctattca tgatgcactg atggttacta
     3061 aggatgtgtt agaaagacct gccatagtcg cagggggagg ctctccagaa tcatatacag
     3121 cagggaaact aagagaatgg tcgaatagct tatcaggcag ggaacagtta gcagcggaaa
     3181 agtttgctga atcgctcgag gtaattccac tccgcttggc agagaatgcg ggaatggacc
     3241 caatcgacac cctaacagaa ttacgttcga agcagctgaa gggttcaaaa tggagcggca
     3301 tagatgttag aaatggaaaa gtaacagata tgtcgaagct agatatagtt gaaccgctta
     3361 gcgtaaaaga acaaataatc aagtcagcca cggaggttgc atccatgatc ttaagaatcg
     3421 atgatgtaat tgcgtcaagc aaatctggtg gcccacctgg tggtggagga atgcctccgg
     3481 gcggcatggg tgacatgtga caagaattca agaatgacgc aaaatcggat tcgagcagtt
     3541 cttcatagta tatgaagaat ttttaatttt ttattattaa ccaccaactt tttaattata
     3601 cctgatttat aacggaagcc aagttcaatg cttttaccga gttctaagaa catgatactc
     3661 aagatgtaac taatacgaac tgacagcagc agtttttgaa agcaaatgag acacactgtt
     3721 tccattatga gataataaag tcttccaaat ttcattgtca ttatctcgca tcttccccat
     3781 cgtgagggtt ttgcgggatc cattttagag aggactcgtc ataaacacaa tcaactcttt
     3841 ctgtttttac tagtgagttc gcaatttgaa tgggaagtgt gtccaccaag tattctattt
     3901 tctcgatggc attgtcgtat tgagacaaac ccttaccact tttgagagaa aagaccacct
     3961 tgagatttgg gtctgcagac acatcacaaa aaactaatga tacttttaat cctttattgc
     4021 ctcttctccg cttcatttct ttaaggagac ccttaatttt attccatcta tcagctccta
     4081 acaataaaaa gaatgaatca ctataagata cagggaattg tatttcaaca aaacttaaat
     4141 aattcgagtc aggaggcaca ttttcttctt gtactgaaaa taaactcgac aaagtattat
     4201 atataatttc tatttcgagt ggggataatc caaagtaacg gaaaagtgcg atgcgagcag
     4261 gacgttgcat aactactgtt ttcctgtaac cattgtagaa taaaaaatta aatcacatcc
     4321 accactactt tt
//
LOCUS       DASSIK010000117         2287 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_711866, whole genome shotgun sequence.
ACCESSION   DASSIK010000117 DASSIK010000000
VERSION     DASSIK010000117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2287)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2287)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2287
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_711866"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..303)
                     /locus_tag="VFI64_02165"
     CDS             complement(<1..303)
                     /locus_tag="VFI64_02165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242124.1"
                     /translation="MSAPASAFNYEESIKRFTYFGISKLLKESEYSNNYDSNRSQDSI
                     PNNLLNKYLELIGREIMRDEAPSLDDIETKLQATREQMGYSDNGGTNVNEKYNDSTI"
     gene            complement(278..1942)
                     /locus_tag="VFI64_02170"
     CDS             complement(278..1942)
                     /locus_tag="VFI64_02170"
                     /inference="COORDINATES: protein motif:HMM:NF019348.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HET7242125.1"
                     /translation="MISDDFYEIVHKSYSSNPNYTSSSPGLPENYHDIKTLGDLLGIN
                     YKHFAVEEQLRNNLISKLKRGEAPYPGIIGYDNEVVPSLNRAILSGHDILLVGQIGQA
                     KTKIAETIAQSLLSPIPVVRGTITNDVPTLIPEPELVALLGDKDVIRTKPEFSVSIEC
                     ENIIRNNKLDTKIDWNEGHSRFKYILATPDISVKDLVGQIDAIKIAKRGVEIYSMESY
                     SPGQLLQARHGILCIDEIPVLDPRKQVALLSVLQEGKFTTGSYPVEFRPDAKIIATAN
                     PVDYTHSGKIIEPLYDRLRSHITTHYPRTPLDEMLIIVQESRVFDLSNVFVPVYILQT
                     LSEISHIARAHSEINHDKGVSVRMSIHSFEIVVSEAERTRGFLYAARVIPRFSDLHCI
                     HQTAKFELAEIDDTFENRKKILDSIILEAIKKISISYLTDIQPEKLMRLKDEFKDGRN
                     FQASQDIPGGYNASIQSYELQIEKFPVLKEIVGMVSRKVFEEQKRFEENAKKHRIEMP
                     YISTGKQNDSEFTASVAELVLEGLRFIDPPLIERKDGLYVSSSVSV"
BASE COUNT          636 a          458 c          390 g          803 t
ORIGIN      
        1 tattgttgaa tcattgtatt tttcgtttac atttgttcca ccattgtctg aatatcccat
       61 ttgctccctt gtagcctgta gctttgtttc aatatcatca aggctgggtg cttcatctct
      121 cattatctct cgaccaatca attccaagta tttgttcagc aaattgttgg gaatagaatc
      181 ttgtgatcta ttactatcgt aattattact gtattctgat tctttcaata atttactgat
      241 gccgaaatag gtgaatcttt tgatactttc ctcgtagtta aacgctgacg ctggagctga
      301 catacaatcc gtcctttcgt tctattaacg gtggatctat gaatctgagg ccttccaaaa
      361 ccaattctgc cacagatgca gtaaattctg aatcgttctg tttgcctgtg gagatgtatg
      421 gcatttctat tcgatgtttt tttgcgtttt cctcaaaccg tttttgctct tcaaaaactt
      481 ttcttgatac cattcccacg atctctttta acactggaaa tttttctatt tgcaattcat
      541 aactttggat agaggcatta tatcctcccg gaatgtcttg cgaggcttga aaatttctac
      601 catccttgaa ttcatccttt aatctcataa gtttttcagg ctgaatatct gtaagatacg
      661 atatggaaat cttctttatt gcctctaaga tgatggaatc caatatcttt tttctattct
      721 caaatgtatc atcaatctca gctagctcga actttgccgt ctgatggata caatgaaggt
      781 cactgaatct gggaattacc ctagccgcgt agagaaatcc ccgtgtcctt tcagcctcag
      841 atactactat ctcaaaggaa tgtatagaca tcctcacgct cactcctttg tcatgattga
      901 tttctgagtg cgcacgtgct atgtgtgaaa tttcggaaag ggtttgcaga atatagactg
      961 gaacgaacac attgcttaga tcaaagaccc gtgactcttg aacaataatc aacatttcat
     1021 ctaaaggtgt tctaggataa tgtgtagtta tgtgacttcg aagtctgtca tacagaggtt
     1081 caataatttt tccagaatgt gtataatcaa caggatttgc ggtagctatg atttttgcat
     1141 ccggtctaaa ttcaaccgga taagatcctg ttgtgaattt accttcttga agaacactca
     1201 gtaatgctac ctgtttcctg ggatccaata cgggaatctc gtctatgcat agtatcccat
     1261 gtctggcctg cagaagctgg cctggagaat atgattccat actataaatc tctactcctc
     1321 ttttggcgat tttaattgca tcaatttgtc ccaccagatc ttttaccgaa atgtcgggtg
     1381 tagccaatat atatttaaac ctggaatgac cctcattcca atcgattttg gtgtcaagct
     1441 tgttgtttct aataatgttt tcacactcaa tagacacaga aaattctggc ttagttcgaa
     1501 ttacatcttt atcaccgagt aaagcaacta attcaggctc aggaattaaa gtcggaacat
     1561 cattagtaat tgttcccctg acaacaggaa taggtgataa taaactctgc gcgatagttt
     1621 cagctatttt cgtcttggct tggcctatct gtcctactaa aaggatatcg tgcccggaga
     1681 gtatagctct atttaaggaa ggaactactt cattatcata tcctatgatt ccagggtagg
     1741 gagcctcccc tctttttagt ttgcttatta agttattacg aagctgttcc tccactgcaa
     1801 aatgcttgta attaattcct aataggtcgc caagagtctt aatgtcatgg taattttctg
     1861 gtagaccagg acttgacgag gtataatttg gattcgaaga ataactctta tgaacaattt
     1921 cataaaaatc gtcagaaatc aatcatgcat ctctcttggt ttgcaaattt aaaggtttca
     1981 aacatcaatt tcaaaataat accttcttaa acatcttcat gcttccagtt ttatatttat
     2041 tattagtaac aatttttgtg cgagcccaaa ttaaacgttg gtctcgaagt taatacatct
     2101 acaattatcg tattatttag cttgtttcgt cggtagaatg atctaatata aaataaattc
     2161 catttcccat catattgata ccataatcgt tagaaacaat ttagaacctt cggtattatc
     2221 tgagtttatg gtgttctacc aaagccatta ccttttcact agttgttagg atgatccagt
     2281 caacatc
//
LOCUS       DASSIK010000118         2293 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1319518, whole genome shotgun sequence.
ACCESSION   DASSIK010000118 DASSIK010000000
VERSION     DASSIK010000118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2293)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2293)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2293
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1319518"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..245)
                     /locus_tag="VFI64_02175"
     CDS             complement(<1..245)
                     /locus_tag="VFI64_02175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242126.1"
                     /translation="MRQSVTGMRKSSSAALIWILKVFSQERYFDLVRIIAKDSTCTEN
                     NLTSKNIMDELNLTRRQFNFRISRLTAGKLVNKVNNK"
     gene            815..1111
                     /locus_tag="VFI64_02180"
     CDS             815..1111
                     /locus_tag="VFI64_02180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HET7242127.1"
                     /translation="MVHEYRDRIYIRKDIILKLSEYGELNQSRLMSYCGLNNIKHKGI
                     LDDMVRKGLLAKIEEPWGNKTIMKYRVSEKGREILKEVLEPYETLFPRNEKSDT"
     gene            1161..1571
                     /locus_tag="VFI64_02185"
     CDS             1161..1571
                     /locus_tag="VFI64_02185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242128.1"
                     /translation="MADFNDDRSSSERNLFKLMDGIIYQLNKTKKMFIIMILTVMILP
                     PITLLISSLVFAPPYEDSGPVQKKMIPGEVRHYKFFNLRIVPLIISAVWLGIGIRQWF
                     VLSEWTKKYERYKKLQEEVDKKLEDDDNNNGAQN"
     gene            complement(1793..2047)
                     /locus_tag="VFI64_02190"
     CDS             complement(1793..2047)
                     /locus_tag="VFI64_02190"
                     /inference="COORDINATES: protein motif:HMM:NF012573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242129.1"
                     /translation="MLWRDGGDTVIGDLANDKIVSGQGSDQISAESGDDRIYQRLINS
                     TEPDGSKDAIICEDGNDEIWINFSTDGDQVRDDCEVIHKG"
BASE COUNT          750 a          431 c          391 g          721 t
ORIGIN      
        1 tacttattgt taaccttatt aaccagtttg cccgcggtaa gtctcgatat tctgaaattg
       61 aactgccttc tggtaaggtt caattcgtcc attatatttt tagaggttaa attattttct
      121 gtgcaggtag aatcttttgc aatgatcctt accagatcaa agtatcgttc ttgtgagaaa
      181 acttttaaga tccagatcag agcagctgaa ctagattttc tcattccagt tacggattgc
      241 ctcataatag ttcatgtccc cttgacatta taaccgtggg aaatagtatt tattttttgt
      301 catattccca aaaagtacga tgttactaat tcatataatc ttcttatcat attcgattca
      361 ttttgtacga ttctaaatta aatcggcaaa ttctagaatt ctctaactgg gcttgccaat
      421 gatgagaaag tacatcattg gttaaaaatt gaggtgactt ttgaccacgc aattctcaca
      481 ggtctatgaa ttagtataaa aatagcgacc tagaacaatt aaaattatac taaatactct
      541 atctaggatt tgagtagatc aaaaattggg aattgaatta tagcaactat actaattcta
      601 tgcttcaagt cagatgctca tttatgcatt ttcaatgtta tttgcagcca ttacactgga
      661 attaactgtc taagaaatgc taaaataaca acaatcaaag agaacgtata aacaactatt
      721 taagacagaa aagaattcat aggcatgaaa ctgacatgat cttttggatt atgtgtaaga
      781 tagataggcc tcaataatat aaatttgaga agaattggta catgaataca gagacagaat
      841 ttacattcgc aaggatatta tcctgaaact atcagaatat ggggaactca accagagtag
      901 gctaatgagt tattgcggct tgaacaatat caaacataag ggaatacttg atgacatggt
      961 aagaaaggga cttctggcca agattgaaga accctggggt aacaaaacga taatgaaata
     1021 tagagtgtct gagaagggaa gagagatcct aaaagaggtc ttagaaccat atgagacgct
     1081 atttcctaga aatgagaaat cagatacgta acaaagttac ccaaatgatt ttaagcaaaa
     1141 agggagagat tcgctaagta atggccgatt ttaacgatga taggtctagt tcagagcgga
     1201 accttttcaa acttatggac ggcataattt atcagctgaa caaaacaaag aaaatgttca
     1261 tcattatgat tctcacggtt atgattcttc ctcctataac tttacttatc agttctttgg
     1321 tgtttgcgcc accgtatgaa gacagtggtc ctgtccagaa aaaaatgata cctggagaag
     1381 taagacatta taaatttttc aatttacgta tagtccctct tatcatatct gcagtctggc
     1441 tgggcatagg aataagacaa tggtttgtgt tgtcagagtg gaccaaaaaa tatgaacgat
     1501 acaaaaagtt acaggaggag gttgataaga aacttgaaga cgatgacaat aataatggtg
     1561 ctcagaatta gtaaacaaat gtgcaaaaaa tactgccgta ctggattctt acattccaag
     1621 ttgtctatgg atttcctaga atgaataaaa aaagcagaat cagaaagtat ctgcccgttc
     1681 taatgagtag aatacgccca agattacatg atcctgctat tattgactac tacgtcacct
     1741 tatcgtgaaa tctgactaaa tactaatctt atttaaggta accataagct aattagcctt
     1801 tatgaataac ttcacagtca tccctaactt ggtctccatc ggtactaaag ttaatccaga
     1861 tttcatcgtt tccatcttcg cagattattg catctttact accatcaggt tcagtagaat
     1921 taataagtct ttgataaatc ctgtcatctc ctgattcagc actaatttgg tcacttcctt
     1981 gcccactcac tattttatcg ttagccaaat cccctattac tgtgtcgcct ccatcccgcc
     2041 aaagaatgta tcatgtcctt cccctccaat tatttcattt gctcaatgtt caccaaagat
     2101 gttatcattg ccattactta caagtatttg atcactacca ttgccctcat tcattatgtc
     2161 ggtccctgcg tccccggcat ataatccgca gggccatctc cgctcatatt atcatgtcct
     2221 tcccctcaga ttctttgatc cgctacatct attcccctca ttgtgtttga gatattgtcg
     2281 ccaatcatta ttt
//
LOCUS       DASSIK010000119         3007 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_712086, whole genome shotgun sequence.
ACCESSION   DASSIK010000119 DASSIK010000000
VERSION     DASSIK010000119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3007
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_712086"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..210
                     /gene="nadA"
                     /locus_tag="VFI64_02195"
     CDS             <1..210
                     /gene="nadA"
                     /locus_tag="VFI64_02195"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008987 - quinolinate synthetase A
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HET7242130.1"
                     /translation="ETGILHRMKRENPDKAFIPVKEEAVCKYMKMITLEKVVNSLMKK
                     RYEVKVQDHIAEKARKSILRMMAVS"
     gene            complement(270..1160)
                     /gene="nadC"
                     /locus_tag="VFI64_02200"
     CDS             complement(270..1160)
                     /gene="nadC"
                     /locus_tag="VFI64_02200"
                     /EC_number="2.4.2.19"
                     /inference="COORDINATES: protein motif:HMM:TIGR00078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004514 - nicotinate-nucleotide
                     diphosphorylase (carboxylating) activity [Evidence IEA];
                     GO_process: GO:0019363 - pyridine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HET7242131.1"
                     /translation="MNQRDDSPSFRNYLDERKALLNFLREDIGRGDITSNSVLKPNLL
                     ASSTILCKDSEQAVVAGLREVGLVFDLCKCSCKSLVDEGSIVSHGNEVMKIKGRARDI
                     LKAERTALNLLMRMSGIATETKKFVEVVKKISKDIEIAGTRKTAPGLRFFDKKAIKIG
                     GGRAHRNSLDEMVLIKDNHLVLTGSIRESISSAKKLVGNNIKVECEVTDLQSAIEAIN
                     YGADIIMLDNFSPQEVENANRVLKELGLRQKCLLEISGGISLANVSQFAKSNPDIISV
                     GSLTHSVKSVDFSLEVDSCR"
     gene            complement(1157..1345)
                     /gene="spt4"
                     /locus_tag="VFI64_02205"
     CDS             complement(1157..1345)
                     /gene="spt4"
                     /locus_tag="VFI64_02205"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003711 - transcription elongation factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor subunit Spt4"
                     /protein_id="HET7242132.1"
                     /translation="MAREVACRKCKALTTGKVCPICKSTDLSSDWSGIILVFDAEKSM
                     IASTLQIVAPYKYALKVS"
     gene            complement(1346..1984)
                     /locus_tag="VFI64_02210"
     CDS             complement(1346..1984)
                     /locus_tag="VFI64_02210"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase"
                     /protein_id="HET7242133.1"
                     /translation="MFAIVHLDDVVRIPPNRMKSSLNVTATEILKEKYESMISPELGY
                     VIMIIDAKTNSVGKLVAGDGATYHKVSFRALTFYPKLQEIVEGEIVEITDFGAFVRIG
                     PTDALLHLSQITDDYLKSDVKQGVIVANQSARSLKIGSKIRARVTAVSLGKGTAMGKI
                     GITCRQPFLGAVEWIEEELKKAKQTQVPSHPKEAKQTQVPSHPKEKKGVASA"
     gene            2321..>3007
                     /locus_tag="VFI64_02215"
     CDS             2321..>3007
                     /locus_tag="VFI64_02215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-loop NTPase"
                     /protein_id="HET7242134.1"
                     /translation="MEFQDSIFGVVEVVTDEPFTMYDLNTFLSDRKQMVSLEQVYSSL
                     RRVVDPELHKDIVSMGMIKDLSINGDKVGFTLELTTPACPFNTEIEQDVRNTIAELGV
                     AELDLKVTARVMEGRAISMDELLPGVKNILAVASGKGGVGKTTVSVNLAISLAKTGAK
                     VGLLDADIYGPSVPLMFGLKDAPQVINNKIEPIVSEGVKIISMGFFYEQSQQAGIYRG
                     PIVSGIVKQFL"
BASE COUNT          845 a          601 c          611 g          950 t
ORIGIN      
        1 gagactggta tattacatag aatgaaaaga gaaaatcctg ataaagcatt cattcctgta
       61 aaggaggagg cagtttgtaa gtatatgaaa atgataacat tagaaaaagt agtgaattca
      121 ttgatgaaaa aaagatatga agtgaaagtt caagatcata tcgcggagaa ggctagaaaa
      181 tcaatactac gtatgatggc agtttcctaa tttggtaaaa ttcatcttct gggtttattt
      241 taaatcaaaa aaaggcggtt ttaattcttt caacgacaag aatcaacctc gagtgaaaag
      301 tcaacagatt taacggagtg agttaacgag ccaacagaga ttatatccgg atttgacttt
      361 gcaaattgag atacattggc caagcttatc cccccggaaa tttcaagcaa acatttttgt
      421 cgtaatccca attccttcaa gactctatta gcgttctcaa cttcttgcgg tgagaagtta
      481 tctagcatta tgatatcagc tccgtaatta atcgcttcta tagctgactg aagatccgtt
      541 acctcacatt ccaccttgat attgttaccg actaattttt ttgcactcga gattgactct
      601 cttatggaac ctgttagaac cagatggttg tctttgataa ggaccatttc gtccagtgaa
      661 tttctgtgag ctcttccgcc tccaattttt atcgcttttt tgtcaaaaaa tcttaaaccc
      721 ggtgctgttt ttcgagtacc agctatctca atatctttag aaattttctt gaccacctca
      781 acaaatttct ttgtttctgt agctattcca ctcattctca taagtagatt taatgctgtt
      841 ctttctgcct tgagaatgtc tctagctcgg cctttaattt tcattacttc attgccatga
      901 ctaactatag aaccctcatc aaccaatgat ttgcacgagc atttgcacaa atcaaaaact
      961 aatccaactt cccttaaacc tgctactact gcctgttcgg agtccttgca gagtatcgtt
     1021 gatgacgcta gtaaatttgg cttaagaact gaattgcttg taatgtctcc acggccaatg
     1081 tcttctctaa gaaagttaag taaagctttt ctttcgtcta aatagttcct aaatgacgga
     1141 gaatcatcgc gttggttcaa gataccttta gagcatattt ataaggcgcc acaatttgaa
     1201 gggtggatgc tatcatggat ttttctgcgt cgaaaaccaa tattattccg gaccaatcag
     1261 aactaaggtc tgttgatttg catatcgggc ataccttgcc tgttgttaaa gccttacatt
     1321 tcctgcaagc tacttctctt gccaattaag cactagccac tcccttcttt tcttttggat
     1381 ggctggggac ttgtgtctgc tttgcttcct ttggatggct ggggacttgt gtctgctttg
     1441 ccttctttaa ttcctcttct atccactcta cagctcccag gaatggctgt ctacaagtta
     1501 tgcctatttt gcccatggcc gttcctttcc ctagactcac ggctgttact cgagctcgaa
     1561 tctttgagcc gatcttaaga gacctggctg attggtttgc cactatcacg ccttgtttga
     1621 cgtcactttt aaggtagtca tcagtaatct gggatagatg taataatgca tcagtaggac
     1681 caattctgac gaatgcacca aaatcagtga tttctacaat ttcgccttcc acgatctctt
     1741 gcaatttcgg ataaaacgta agcgctctaa agctaacttt gtgataggta gctccgtcgc
     1801 cagcgactag ttttcctaca gaattggttt tggcatctat tatcataatt acatatccca
     1861 actcagggct tatcatgctt tcatactttt cttttagaat ttcagttgct gtgacattca
     1921 gtgagctttt catacggttt ggaggaattc tgacaacatc gtccagatgc acaatggcaa
     1981 acattacctt tactgcagag tggtttgaac gatcaattta tgaacctttt cattccttgg
     2041 ggaagacgca gatatgccaa gtgtaattca gtttctatat ccatacaata tcactccact
     2101 tgaagaaaat aaggttaaag gcacgagtac gactatggaa atattgtaat ttgtttgcag
     2161 ctgcattata cctcatcagt tatctggagt ggggcgttgt atttcctccg caatgcatga
     2221 aaagaacaac ttatgttaca ttttggcagc aaggtggagg ttaagacttg ccatgccaac
     2281 cggtatattt aggtcaattc agcaggtcta gcagttgaaa atggagtttc aagacagtat
     2341 ctttggtgtt gtagaggttg taacggacga gccgttcacg atgtatgatt taaatacttt
     2401 cttgagtgat cgtaaacaaa tggtatcact cgaacaggta tattcttctt taaggagggt
     2461 tgtggaccct gaattacata aagatatagt atcaatggga atgattaagg atctttctat
     2521 taatggtgat aaagtgggtt tcacattaga acttacaacc cctgcatgtc cgttcaacac
     2581 agagatcgaa caggacgtgc gaaacacaat agcagaactg ggtgtagccg aactggatct
     2641 gaaggtaacg gctagagtta tggaaggcag ggcaatttct atggatgagc tgcttccggg
     2701 tgtcaaaaat attctcgctg tagccagtgg aaaaggtgga gttgggaaga caacagtctc
     2761 ggtgaatctg gccatttctt tggcgaaaac cggtgcaaag gtaggattgc tggatgcaga
     2821 tatttacggg ccgagtgtcc ccctgatgtt tggtctgaaa gacgcgcctc aggtaatcaa
     2881 caacaagatt gagcctatag tttctgaagg tgtcaaaatc atttcaatgg gattcttcta
     2941 tgagcaatct caacaagccg gaatctatag ggggcctata gtatctggaa ttgttaaaca
     3001 gttcctc
//
LOCUS       DASSIK010000120         2091 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1319713, whole genome shotgun sequence.
ACCESSION   DASSIK010000120 DASSIK010000000
VERSION     DASSIK010000120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2091)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2091)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2091
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1319713"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..525)
                     /locus_tag="VFI64_02220"
     CDS             complement(<1..525)
                     /locus_tag="VFI64_02220"
                     /inference="COORDINATES: protein motif:HMM:NF017051.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HET7242135.1"
                     /translation="MTNGNGDDSLKLVNLRVTYKNAPIHVLEKFAFKDVNEANDLFLG
                     NHKVKECVIVQTCNRVELFVAIQNQMPQEILQKWASVTDLSDSLVKFIEMSEDNTAFR
                     HLLSLTSGLDSLVVGEDQILGQVKRAFEFARHNKHAGSYLSLVFNHAIKTGTRIRNQT
                     GLNKGSVSIGSIAVN"
     gene            complement(525..1193)
                     /locus_tag="VFI64_02225"
     CDS             complement(525..1193)
                     /locus_tag="VFI64_02225"
                     /inference="COORDINATES: protein motif:HMM:TIGR01470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional precorrin-2
                     dehydrogenase/sirohydrochlorin ferrochelatase"
                     /protein_id="HET7242136.1"
                     /translation="MIVDLNLDSKTVLVIGGGTEGMRKVHGLLGQGCDITVIDTRVNK
                     DLLHLGQQDKIKIIQQKMTDISFMDSFKKIFLVLAATDDKDLNRKILEKGRAMGAFVY
                     AADDPAVSDFSYASLTNIEGVLQVAISTYGKSPIMARKIRMRVERILHRIIKTSDLDN
                     ILLQDFARSLAKERIKSIKERKQFLYSLLKNRDIQNLILSRKLEEAKKITRRLIKNWQ
                     EIHK"
BASE COUNT          634 a          411 c          350 g          696 t
ORIGIN      
        1 gttaacagct attgaaccaa tagaaacact gcccttgttc aagcctgttt gatttctgat
       61 tcttgttcca gttttaattg cgtgattaaa gactaaagac agataagagc cggcatgctt
      121 gttatgacga gcgaattcaa aagctcgttt aacttgtcca agaatttggt cttcacccac
      181 tactaatgaa tctagtcccg aggtcaaact caaaaggtgt ctgaatgcag tattgtcctc
      241 actcatttct atgaatttca ctaaggaatc ggataggtca gtcactgaag cccatttttg
      301 gaggatttcc tgaggcatct gattctgaat ggcaacaaac aattctacac ggttacatgt
      361 ttgcactatg acacattcct taaccttatg gttgcctaag aacaaatcat tcgcctcgtt
      421 tacatccttg aacgcgaatt tttcgagtac atgaattggt gcgttcttgt aagtgactcg
      481 aagattcact aatttcaagg aatcatcgcc gttcccgttc gtcattactt atggatctcc
      541 tgccaattct ttattagcct tcgtgtaatt ttctttgctt cctcaagctt tctactgagt
      601 atcaagttct ggatatccct attctttaat aaagaataga ggaactgttt acgctcttta
      661 atagacttta ttctctcttt tgccaagctc ctagcgaaat cttgcaagag tatgttatct
      721 aaatcagaag ttttaatgat tctatgcaaa attctttcta ccctcatcct tatctttctt
      781 gccatgattg gactctttcc ataagtagag attgctactt gcaaaacacc ttcgatgtta
      841 gtcaacgatg catatgaaaa atcgcttacc gcaggatcat cggcagcgta aacaaatgct
      901 cccattgccc gacctttttc taagatcttc ctatttagat ctttgtcatc agtggctgcc
      961 aggacaagga aaattttctt gaaactatcc atgaacgata tatcggtcat tttttgttgg
     1021 ataatcttaa ttttatcttg ttgtcccagg tgtaaaagat ccttattgac ccgagtgtca
     1081 attacggtta tgtcacatcc ttgccctagc aatccgtgga cttttcgcat tccttcagtc
     1141 cctcctccaa tcaccaatac tgtcttggag tccaaattaa ggtctactat cattttaact
     1201 accctgcaga tttatgcatt tgtgaagttg aattttcttt atttaatcgt tccattatga
     1261 gtcagtttta ttagatcact ttttccatag catgaataaa ttggagaagt tatcatcaat
     1321 tgaggaatta gttgtcttgt ctttagatct tcgcaaagca actacattga atacgaaaat
     1381 gttcaaagaa tatgcctgtc tcacttgcca tttcacgtat tgttaattta ttctacacat
     1441 ctaccgcgcc taaataatag tgacggacga tccgagagca tttcagcaca aaaaacggca
     1501 gatagtgatg gcaattactt acaatatgtt tattagagcc aaataaaaaa agaggattac
     1561 taaatcgaat ctaggtaaac cggatgtctc caatgaggct gttaggagtt tagcattatt
     1621 gtagaaagat tgtttagatg attcaagaga tttagacaga tccaaatgcg gcaaaaaact
     1681 aataacattc tactcaggtg tattcaaata gtaaaacttt tgaaagtttt cagaccagtc
     1741 cgtaatcatt acatgcgaga gacggtcgac ttgttgaagt ttaaaagata ttcttaaatc
     1801 cattattccc attacaaatg atttctaatt gatacactgg attctggtgt caaattttag
     1861 taatgcagga gaaacaatgt attcggttca gccgtcttag ataaacacct cattaccata
     1921 actgacattt atatattgcg tccaaattca aagaaatcaa ccagattgag caatttattc
     1981 cttttagttc agtgtggata aacattctaa caaagattat tggaagaaat atatataata
     2041 acgtcgttat aatcacgtac taatgacaac cgaagagatt aacattcata a
//
LOCUS       DASSIK010000121         2589 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_817071, whole genome shotgun sequence.
ACCESSION   DASSIK010000121 DASSIK010000000
VERSION     DASSIK010000121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2589)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2589)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2589
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_817071"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..341
                     /locus_tag="VFI64_02230"
     CDS             <1..341
                     /locus_tag="VFI64_02230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="inositol-3-phosphate synthase"
                     /protein_id="HET7242137.1"
                     /translation="AAMVPYPIPMRIGPSDFVGFLDNDKICYINMRGKYFGNVPIELD
                     VKLKVVDAYNSAGVMIDAIRGTKLAIDRGTSGPLESISAYCFKHPPVQMTYSDAKDRF
                     MEFIEGKRER"
     gene            648..751
                     /locus_tag="VFI64_02235"
     tRNA            join(648..662,692..751)
                     /locus_tag="VFI64_02235"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:712..714,aa:Arg,seq:cct)
     gene            1505..2335
                     /locus_tag="VFI64_02240"
     CDS             1505..2335
                     /locus_tag="VFI64_02240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242138.1"
                     /translation="MPIVIRKSVKFNDQLKNNLRIRYEERKKNRLGDAPIHVSDILPT
                     TCIRKQYYSRVFPEKDPISDESVHHFVRGEASEFVITQLAHMGVSQADLEFSGIVAHP
                     DIMGSDLIVELKDTVNGKRLDITDQIFRSYLRQLLYYIVITGLEKGILSIRYNIKELR
                     WIRGDEQGDYYFRPKDANIVGTESWEISLPKQDITREIIKNEMVRRKNLFLRAIEERN
                     PSILPRLVEPMKSKKCPSCPFYDICMDQDGETEDARLMALEKDLLDISGVIDFKPSIE
                     "
BASE COUNT          865 a          450 c          516 g          758 t
ORIGIN      
        1 tagcagccat ggtaccatac ccgataccta tgcgcatagg cccatcagac tttgtaggct
       61 tcctggacaa tgacaaaata tgttacatta acatgagagg aaaatacttt ggtaatgttc
      121 caatagaact cgacgtcaaa ctcaaggtag tagatgctta caacagtgca ggggttatga
      181 ttgatgcaat cagaggaact aaattagcca ttgacagggg caccagcgga ccactagaga
      241 gcatctctgc ctattgcttc aaacatccgc cagtacagat gacttactca gacgctaaag
      301 accgatttat ggaatttata gaagggaaga gggagagata gagtttatag aaaacgccaa
      361 acaaatcttg atattattat tgtaatggat gttgtgtaaa acttagatgt gcaaatatca
      421 tttaaattac tattcaagat ttcttctgat gatgacttgg agactagact acaccgatgt
      481 gattgttatc aaagtggact gaaaagaacc aagacatagt acaaaggacg acttaagtaa
      541 tagatatctg agctttcatt ataaaaactg ttaaaataat tctagttcag attattaaat
      601 cattccttac ttaggttaaa attggcgttc attaaccctt tgatcgcggg ctcgtggcgc
      661 agttcatttc gagagttcga aatgagcgta aaatggacag cgcggacgcc tcctaagcgt
      721 caggtcgagg gttcaaatcc ctccgagccc gttaataatt taagttcagc ttgagcaagt
      781 ccacgataca gcggggagtt tctggtcact tgggacacat aaatcggatt tttccctcct
      841 gcgatctaag cagttctaat acgaacgttc gctaattcta gtaacgccaa ttccagctga
      901 atatcaaatc cttaggatca attatcactt ttatgctttt gatcgtaatg ttctatatac
      961 tccgagtcag tatcaaacag gagattgcat ttgctgcaaa caactggctc acctagcgga
     1021 cttgcatcca ttcccattat gctctgtaaa tgtaaaatat aaattaaatg aatttgattg
     1081 agggagacta acttctagtt ttcacattca gtattctcta gggacctcaa gcgatcgagt
     1141 gtcgaatccc tattcgaata ttcgtttggc ataattatat tgttgaattc taccattgac
     1201 aacgatatat tggtaataga atcgtgggga tattatgaca aaagataaga attatgtctc
     1261 tgcataattt gtcatcaaca aaacaaacaa cttaagttaa ggcttgcttt cttatttcgt
     1321 cgaataattg attgtagcag gtaagatata tcacaaagac gcagctattc catgagttta
     1381 actcaaacgg cagaagagtg gttatgaata cacagacttt aatttttgat ttcgatagga
     1441 ctgatcaata ttagttaaaa gccaattaac ttattatcaa ggtgagaagg agaggaagat
     1501 aatcttgcca atcgtgatac gaaagagtgt gaaattcaat gatcaattaa aaaataatct
     1561 taggataaga tacgaagaaa gaaagaaaaa caggttgggg gatgccccaa tacacgtctc
     1621 cgatattctg ccgactacat gtataaggaa acaatactat tcgagagtat ttccagaaaa
     1681 ggatccaatc tcggatgaat ctgtgcacca ttttgtaagg ggggaggcga gcgaatttgt
     1741 tatcacacag ctagcccata tgggtgtatc gcaagccgat ttagaattta gcggaattgt
     1801 tgcccatcca gacataatgg gctcagattt aattgttgaa ctaaaggata ctgtaaatgg
     1861 taaacgcctt gatataacag atcaaatatt tcgttcttat cttagacaac tcttgtatta
     1921 tatcgtaata accggtcttg aaaaaggaat attatccata cgatataata ttaaagaatt
     1981 gagatggata agaggcgatg aacaagggga ctattatttt agaccaaaag atgcaaatat
     2041 tgtgggaaca gaaagttggg aaatttcact acccaagcaa gatatcacta gagagatcat
     2101 aaagaatgaa atggtccgaa gaaaaaattt attcctacgt gcaatagaag aaagaaatcc
     2161 ttctatttta ccaagactag tggaaccaat gaagtccaag aaatgtcctt catgcccgtt
     2221 ttatgacata tgtatggatc aagacggaga aactgaagat gctagattga tggcacttga
     2281 gaaagactta ttggacatat caggagtcat tgacttcaag ccatccatag aataagtagt
     2341 tgaaaacagt gagatagata tgttttgtca tattagctca acaattaacc tcgctagtaa
     2401 gcttagggtt tatttccctg aagcgcgccg tatcattgga atttaaatag taattctttt
     2461 caatttatac ctcctttttg gcatatgatt taagatcgtg gtgcattcag cccggatatt
     2521 tcttccgaac tatctatgca catatttcat ttccgagaat tgatatggtt tcttatttag
     2581 ttaactggc
//
LOCUS       DASSIK010000122         2521 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_319676, whole genome shotgun sequence.
ACCESSION   DASSIK010000122 DASSIK010000000
VERSION     DASSIK010000122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2521)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2521)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2521
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_319676"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..671
                     /locus_tag="VFI64_02245"
     CDS             <1..671
                     /locus_tag="VFI64_02245"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HET7242139.1"
                     /translation="CRVVLIGRDRSKLAKAAAEIKDKKNTLPISADITKEAEVLSAVE
                     QTISAYDTVDILVNNAGILNDPTPFHMMTEEQWSSLLSTNLIGTFQTTKAILPIMIQK
                     KSGNIINISSLLGVRAIPNVPLSVYGVTKAGVIMLTKSIAVEYGPYNIRCNCIVPSTI
                     RSPIIEPYLQDEKARSVLESSFPLRRIGSPEDISGAVSYLCSEDSNWITGTTLTVDGG
                     LSAR"
     gene            complement(679..1092)
                     /locus_tag="VFI64_02250"
     CDS             complement(679..1092)
                     /locus_tag="VFI64_02250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242140.1"
                     /translation="MEKPIYASLCRSVVALDPSIRFAGIANEDGILVGVSQRKGLKPL
                     LSFEERAQYAITAATRQYTRLRWEVLLGKILYASSHYAKLIRATIPITDDNRRLSYVL
                     LMSFDSNTDNFHEIVIEKVIPLVKKKRASLLKASD"
     gene            1494..1886
                     /locus_tag="VFI64_02255"
     CDS             1494..1886
                     /locus_tag="VFI64_02255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242141.1"
                     /translation="MPKPGFKSITVSENVYRKFFNAYAKNKKELEFKGITSFSGYLTS
                     MMEEIMKKYEANGLHAPFMEKILIGHNSVIIKDNKRNRIAEITLRDNELQCLLDDRND
                     CVHVGFVYSLPELYFMLKPKEIKRSMDL"
     gene            complement(1944..2318)
                     /locus_tag="VFI64_02260"
     CDS             complement(1944..2318)
                     /locus_tag="VFI64_02260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242142.1"
                     /translation="MQRINIIGAAALGAGAVAIVSYLMLTNLAREDYSLGVDAMKDEQ
                     SLFINTRVILTNTGKLPLTHITVDYGSKNETINILNPGEKIGLSPPEGSNLNIVKITA
                     DHGINITKDYRKPIKLPGMIGS"
BASE COUNT          762 a          475 c          498 g          786 t
ORIGIN      
        1 gttgtagggt agtcctcata ggacgagacc gatcaaaact tgcaaaggca gcagcagaaa
       61 ttaaagataa aaaaaacaca ttgccgataa gcgcggatat aactaaagaa gccgaagtgt
      121 tgagcgcagt tgagcagacc atttctgcat atgacaccgt agacatcctt gtgaataacg
      181 ctggaatttt aaatgatcct actccgttcc acatgatgac agaagaacaa tggagctctt
      241 tgctgtcgac taacctcata ggtacgtttc aaactaccaa agctatattg cccataatga
      301 ttcaaaagaa gagtggaaat ataattaaca tctcgtcgct ccttggcgtc cgcgccatac
      361 ccaatgtgcc gctctcagtt tatggggtaa caaaagcagg tgtcatcatg cttacgaaga
      421 gcatagccgt ggaatacggt ccttataaca taagatgtaa ttgtattgtc ccctcaacca
      481 taaggagtcc aataatagag ccatatcttc aagatgaaaa agcaagatca gttttggaat
      541 cctcattccc cctgcgaaga attggcagtc ctgaagatat atccggcgct gttagttatt
      601 tgtgcagcga agattcgaat tggattactg ggacgaccct aaccgttgat ggtggactct
      661 cggcaagata gaatccagtc aatctgatgc tttcaggagt gatgctcttt ttttcttgac
      721 gagtggaata actttttcga taacgatttc atgaaagtta tctgtgtttg agtcaaagga
      781 cattagtaac acgtatgata atcgtcggtt atcatctgta atcggaatgg tagctcttat
      841 aagtttggca taatgcgaac tcgcgtataa tatctttcca agtaacactt cccatcgaag
      901 tctagtatat tgtcttgtgg ctgcggttat agcatattgt gccctttctt cgaacgatag
      961 gagtggctta aggcctttgc gttgggaaac tcctacaagt attccatctt cgttcgcgat
     1021 tcctgcgaac cttatagaag gatccaaagc tacgacagag cgacataacg acgcatagat
     1081 tggtttttcc aatgccctgc ctatcactta ccataatttt aacttcttgt tgaaaagtta
     1141 ttgttggaga aaattttcgt cttgtactat tctggttgat acactgtatg gacttgacga
     1201 ttacgcctag aacaatttat acctaggtta taagtctagg gttgatttta aatttcgttt
     1261 ttttttttgc gaaagtttgg atagctatgt attcgtaata atcatcatga agcgatgtga
     1321 agtgaaatga cgctatccgg actaaaatat tctaatccag cagtgaccct tcacataaaa
     1381 tttgaatcaa atctatttta gacgcatcat gtcgattcat tgcactcgat tagttggtat
     1441 cggtattctt gcaagcaaat cttatatgtt acggttcatt accgaactat ctgatgccaa
     1501 aacctggttt caaatcaata acggtaagtg agaatgttta tagaaaattt ttcaatgcat
     1561 acgcaaagaa caagaaggaa cttgagttta agggtataac tagtttttct ggttatttaa
     1621 caagtatgat ggaggaaata atgaaaaaat atgaagcaaa tggccttcac gcaccattta
     1681 tggaaaaaat tctaataggc cataatagtg ttatcataaa agacaacaaa agaaatcgaa
     1741 ttgcggaaat tactttacgt gacaatgaat tacaatgttt acttgatgat agaaacgatt
     1801 gtgtccatgt tggatttgtc tattcgctac ctgagttgta ttttatgcta aaaccaaaag
     1861 agatcaaaag atcaatggac ttgtaacagg tgcaagccac ttattcactc ttttttttcg
     1921 aattaaggaa gtcggtattc tatctaggat ccgatcatcc ctggcaattt gatgggtttc
     1981 ctataatctt tagttatgtt aataccgtga tcagcggtta tctttacaat attcaaatta
     2041 ctaccttctg gaggagaaag tccaattttc tctccaggat tgagtatgtt gatcgtttca
     2101 ttcttagatc cgtagtcaac agtgatatgt gttaatggta acttacctgt attggtcagg
     2161 ataactctgg tattgatgaa aagagattgt tcgtccttca tggcatcaac tcccaacgaa
     2221 taatcttctc gtgcaagatt agttaacatt agatatgaca caatagctac tgccccggca
     2281 cccaaagcag ctgcgccgat tatgttaatc ctttgcatgt ctattgtatt tgcattagtt
     2341 cgacttattt aaggacattt aaaattaagg acaatacaca ggcaggcgga ttttctaaac
     2401 tcccttcatc tgctccctgg tcctaaatgt cggttttatt cctaaaggag tatagtctcc
     2461 ggtggagcat gaaaagcaca gatctttttc atctatccct attccttcag ccagagttga
     2521 t
//
LOCUS       DASSIK010000123         3189 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_417086, whole genome shotgun sequence.
ACCESSION   DASSIK010000123 DASSIK010000000
VERSION     DASSIK010000123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3189)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3189)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3189
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_417086"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..633
                     /locus_tag="VFI64_02265"
     CDS             <1..633
                     /locus_tag="VFI64_02265"
                     /inference="COORDINATES: protein motif:HMM:NF044723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242143.1"
                     /translation="VGGDLIDCNLGSRATSQLIPTNIRDLEIVDVKADFVMVVEKDTV
                     LNNIRKSGFIKKYNAILMTGSGEPDRATRMMVKALNERWKMPVVIFADADPWGLGIAL
                     RYKIGSESLSYDSDRLVTPDAKVLGMMFSDIYEYNIPEVARLAATDEDINRANDMKKK
                     PWLQDRQWKKELNLFLEHKEKCELDAFFKHGFKYLADTYLPDKLREAGII"
     gene            complement(841..2994)
                     /locus_tag="VFI64_02270"
     CDS             complement(841..2994)
                     /locus_tag="VFI64_02270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose synthase family protein"
                     /protein_id="HET7242144.1"
                     /translation="MSETGGILFVIFMIIAWVMTIYTLNFHYLSYRSRRNIGHEKLAN
                     QTLNLISNSHFPDVTIQLPIYNEKYVATRLIQAVCRIDYPKDKMELQVLDDSDDETSE
                     IIDSAVEAYMRQGYDIKIIRRNSRTGFKAGALQEGMKTAKGEFIAIFDADFIPPSNFL
                     SRVLPYFGNTNIGLVQCRWGHINETFSVLTGAQAVSLDLHFLIEQKAKSTSHLFMNFN
                     GTAGIWRASCIVDSGGWHIGTLVEDLDLSYRAQLKGWKCIFVEDLIVDAELPVQMNAA
                     KRQQFRWAKGSVQVASKLLMKVICHGGISLDTKIQAFIQLTKHIINPLFLIQFLIFPI
                     LLIMNYKIQSSAWSPVLGIIIYLLIGPATYIFMIRKIWGTSWRNKALQYLFLIFFATG
                     ISINNTIAIFDALIGKKNEFLRTPKFGIVQKNQKWNNKSYIIPFTKTTLLEIFFSVYG
                     CIALLISFFSGNALLMPVIGIQTLGFIYVAYISFVQSRGKYDKKRSLHQFQFPNENNP
                     YTSTKNDGESYAKGEDVINTRSYSKSLVHTSVSRQREPSMDRKQSKLIGMGLVFFVLA
                     SGIIAYVGYQNTVYPIDKAVAYLGRAETTQTPDLFVDYVNLARQNLPREGNPVWPFAT
                     AKTDFSSIQNELDALILRGRLVSYLEPNSASYNTALIDMHNSVQKISSNLADAIPFMY
                     INMTNVILASLWILMILVVIKIVTRRKERLSEFKS"
BASE COUNT          977 a          608 c          616 g          988 t
ORIGIN      
        1 gttggaggcg acttaattga ttgcaatcta gggagcagag caacttcaca actgatacca
       61 acaaacattc gggacctaga gatagttgat gttaaagctg attttgtgat ggtggtagaa
      121 aaagatactg tcctgaataa cataagaaaa tctggattca tcaagaaata taatgcaatt
      181 ttaatgacag gttcaggaga accagataga gcgactagga tgatggtcaa ggcattgaat
      241 gaaagatgga aaatgccagt tgtcatattt gctgatgcgg atccttgggg actgggtata
      301 gcacttcgct acaaaattgg aagtgaatcg ctgagttatg atagtgatag acttgttact
      361 cctgatgcca aggttcttgg aatgatgttt tctgatatct acgaatacaa tataccagaa
      421 gtagcgaggc tagctgccac tgatgaagat attaatagag ctaatgacat gaaaaagaaa
      481 ccatggcttc aggatcggca atggaagaag gagttaaact tattcctgga acacaaagaa
      541 aaatgtgaat tagacgcttt tttcaaacat ggattcaagt atcttgctga tacctatctg
      601 ccagataaat tgcgtgaggc aggaattata tagctggaat gggagaacaa tcttccactg
      661 agcataataa tcgcaagtca gtccttaata gtgtaaattg catgtggata ctatttcttg
      721 tggaaacttg gtcgaaaata tagtcatgca tgatatgtaa actcgtttat tccattcaga
      781 actgtctgtt cttactacat agaataggat ccaaatcatc ttgccctatg attcaagttt
      841 ctacgacttg aactcactaa gtctttcctt tcttctagta acaatcttga ttaccaccaa
      901 gatcatcaaa atccacaaag aagcaagaat cacattggtc atgttaatgt acatgaatgg
      961 aatagcatca gcaagatttg aggaaatttt ctggactgaa ttgtgcatat cgatcaaggc
     1021 tgtattgtaa gatgcactat ttggttccaa ataagaaaca agccttccgc gtaaaatcaa
     1081 agcatcaagt tcgttctgta ttgagctaaa gtctgtcttg gcagtcgcaa aaggccacac
     1141 aggatttcct tccctaggca gattttgtct cgcaagattg acgtaatcta caaacaaatc
     1201 cggcgtctgt gttgtttctg ctcttccaag atatgcaact gctttgtcta tcggataaac
     1261 tgtattttgg tatcctacat aagcgatgat gccacttgct aacacaaaaa atacaagtcc
     1321 cataccgatt aattttgatt gctttctatc cattgagggt tccctttgtc tagacaccga
     1381 agtatggacc aatgattttg agtaacttct tgtatttata acatcctctc cttttgcata
     1441 actctcccca tcattctttg ttgaagtgta gggattattt tcgttcggaa attggaactg
     1501 atgtagggat ctctttttgt catacttccc tctagattgc acgaagctaa tgtatgcaac
     1561 atagatgaat ccaagcgttt gtattccaat cactggcata aggagagcat tgcctgaaaa
     1621 gaatgatatt aataatgcga tgcacccata cacagaaaaa aatatttcta ggagtgtagt
     1681 ttttgtaaat gggatgatat aggatttatt attccacttt tgattttttt gtacgatacc
     1741 aaattttggt gttctcaaga attcattttt tttcccaatc agggcgtcaa atatggcaat
     1801 ggtattgtta attgatattc cagtggcgaa aaaaatcaag aacaaatatt gtaatgcttt
     1861 attcctccag cttgttcccc atatcttcct tatcatgaaa atgtaagttg ccggtcctat
     1921 tagcaagtag ataattattc ctagtacagg agaccaagct gaagattgga ttttatagtt
     1981 catgatcaat aaaataggaa aaatgagaaa ttgtatcaag aacaaggggt tgataatatg
     2041 ctttgtcagc tgaatgaatg cctgtatttt tgtatccaat gatatccccc catgacagat
     2101 aactttcatc aataattttg acgcaacttg tactgatccc ttagcccacc tgaactgctg
     2161 tcgcttagca gcgttcattt gaacaggaag ctctgcatcc actattagat cttctacaaa
     2221 aatgcatttc catcccttca gctgagctct atagctcaga tcaaggtctt cgacgagtgt
     2281 accaatatgc catccgccag agtcaactat gcaagaagct ctccagatcc ctgcagtccc
     2341 attaaaattc ataaacagat gagatgtact tttggccttt tgttcgatta ggaagtgcaa
     2401 atcaagagat acagcttggg cgcctgtcaa tacggaaaaa gtttcgttaa tatgtcccca
     2461 acgacattgt actaatccta tattggtgtt gccgaagtat ggtaatactc ttgaaagaaa
     2521 gttgctcgga ggaataaaat ctgcgtcgaa aatcgctata aattctcctt ttgctgtctt
     2581 catgccttct tgcaatgccc ctgctttaaa gccggttctg gagttcctac gaataatttt
     2641 tatgtcatac ccttgtcgca tatatgcttc aactgcagaa tcaattattt ccgatgtttc
     2701 gtcgtcggaa tcgtccagca cctgtagttc cattttgtct ttaggatagt caatcctgca
     2761 cacagcttgg atcaacctag tagctacgta cttttcattg taaattggaa gctgaatggt
     2821 tacatccgga aaatgtgaat tcgaaattaa atttaaagtc tggtttgcta gcttctcatg
     2881 gcctatgttt cgtctggatc tataactcag ataatgaaag ttaagggtat atatcgtcat
     2941 tacccacgca ataatcatga aaatgacgaa caggattccc ccggtttctg acattcctag
     3001 atagcctctc aataaaaaag tacagtaact atttatagtc accgaaaaaa ctataatacg
     3061 ctcattttgt gaagatcttt acgcattgag gcggacatac attttcacag gccatacaga
     3121 atatacagtc cttctctcga atcatgaatg gctttttatc cgaggctgga tgtccagggg
     3181 tgtctaacc
//
LOCUS       DASSIK010000124         2085 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_221207, whole genome shotgun sequence.
ACCESSION   DASSIK010000124 DASSIK010000000
VERSION     DASSIK010000124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2085)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2085)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2085
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_221207"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..240)
                     /locus_tag="VFI64_02275"
     CDS             complement(<1..240)
                     /locus_tag="VFI64_02275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242145.1"
                     /translation="MIQKQKLMLAMITAVFVLGFITNSQLNSFFVVDAQDGSNNGNSD
                     NIESVLPDMGLDSSANSTLSNFSLPSVSSSEDVVAD"
     gene            685..1638
                     /locus_tag="VFI64_02280"
     CDS             685..1638
                     /locus_tag="VFI64_02280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242146.1"
                     /translation="MNRFALLVAVLLIISFFINVGVLNKIRAQIPIPLPSFSNAPAVR
                     ITFPHHFENVSLSAPLNISGISSDNELTNCKVSVIVNKVKPYQEVVASGKSGMNDYSN
                     WSFTLNSNYTSLSEGANKLTSKISCLTNSGSTPNSTKWFSVNVTGVRDMYPSSSNYRG
                     YSSPVLQNSSKTLPQATTIERAGPQPDNSTEKSSPIIKDTTYPVADAGQDQILKARSI
                     VNLNAAKSKDSDGAIVSYSWIQLSGNPTVPLHNADFPVATFEIPDVKSDSKLSFRLTV
                     VDNDKLAASDTVNVIVKGLKTQNQVPKDDTSCDEIGITNLC"
     gene            1873..>2085
                     /locus_tag="VFI64_02285"
     CDS             1873..>2085
                     /locus_tag="VFI64_02285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242147.1"
                     /translation="MVDSKSNDITDSNKSEKESAIEFLENRGFKLEQSDEGFEVRITH
                     RSVGGGINEIFVESDELQAVRKLGNLV"
BASE COUNT          661 a          380 c          399 g          645 t
ORIGIN      
        1 atcagcaacg acatcttccg aggaagatac acttggcaag ctgaagtttg acagggtgga
       61 attggccgaa ctgtcaaggc ccatatctgg aagcacagat tctatgttat cactgttgcc
      121 attattggat ccatcctgag catccaccac gaaaaatgaa tttaattgag aattcgttat
      181 aaatcccaga acaaaaactg ctgttatcat tgctagcatt aatttctgtt tttgaatcaa
      241 atctgttaat tacactgcca acaaacttta ttagtgttta gcactctctc tctagaggcg
      301 tattctataa aggctgcaat tcactggata gtagtgttct actgtataat cagtattcag
      361 ttggtctata gaccggagct attttcactt agctgcttcg aaatgttttc cgcaatataa
      421 ttagcgactg gtttcatatt attactctga tcagatactg ttgttactgc acgatttgta
      481 attatatagc ataatatgtt cgagaaaagg ctgaataata atctacgagt atcgcaagaa
      541 gagactccgc tgatacagta tatttataac taaacagctt cgtggcccgt ttgactaccg
      601 atattatgat gtgatgttat atttttaatt tctcttatac gcttaaacgc gatgttgctt
      661 atttcaattt tattaggaga tactttgaat cgattcgctt tattggtagc agtgttgttg
      721 attatttctt tttttataaa tgtgggtgta ctaaacaaaa taagggctca aataccaatt
      781 ccgcttcctt cgttctcgaa cgctccagca gttcgaataa cttttcctca tcattttgaa
      841 aatgtcagtt taagtgctcc actcaatatt tcgggtattt caagcgataa tgaattgaca
      901 aattgtaaag tttcagttat tgtgaacaaa gtgaagccct atcaagaggt tgtcgcgtca
      961 ggtaaaagtg gaatgaatga ttattctaat tggagtttta cactgaattc taattataca
     1021 agcctcagcg aaggcgccaa caaactaaca tccaagatat cctgtctgac caattcaggt
     1081 agtaccccaa attcgactaa gtggtttagt gtcaatgtta ctggagtaag agatatgtat
     1141 ccctctagta gcaattatag aggctatagt tctccagtat tgcaaaattc aagcaagaca
     1201 ttacctcagg cgacaacaat cgaacgggca ggaccgcaac cggacaattc aacagaaaag
     1261 agctcaccca ttataaagga tactacttat cctgtggccg acgcaggaca ggatcaaatc
     1321 ctaaaagcac ggtctattgt caacctcaat gctgcaaaaa gtaaagactc cgacggtgcg
     1381 attgtctcct attcatggat tcagctctca ggaaatccaa ccgttccatt acacaatgct
     1441 gattttccgg ttgcaacttt tgaaattcct gatgttaaat cggacagcaa attaagtttt
     1501 agattaacag tcgtagataa tgataaactg gctgccagtg atacagtgaa tgtgatcgta
     1561 aaaggattga agacacaaaa tcaagttccc aaagatgata caagttgtga tgagatcggt
     1621 ataactaacc tttgttgaaa taattatatt tcgacgttct atttattgtt ttgtgcattc
     1681 atacgtgtca gatatatacc ataatttttt agaaccccgt gacctttaga gttcataatt
     1741 ttcaaggcat agttcagtat ttacccttag atcgatagcg gccttgcgtg cgggattctt
     1801 cctcaattca gattaattcc tttaaataat actaaaagat actacaagaa gatctcaaag
     1861 cagactttgg tggtggttga ttcgaaatca aatgatataa ccgattcaaa taagtcagaa
     1921 aaagaaagtg ctattgaatt tctagaaaat agaggtttca aattagaaca gtctgacgaa
     1981 ggattcgaag taagaatcac gcatcgatcg gtgggcggag gtataaacga aatatttgtc
     2041 gaatcagacg agttgcaggc agtaagaaag ttgggtaatc tcgta
//
LOCUS       DASSIK010000125         2273 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1106666, whole genome shotgun sequence.
ACCESSION   DASSIK010000125 DASSIK010000000
VERSION     DASSIK010000125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2273)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2273)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2273
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1106666"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            254..691
                     /locus_tag="VFI64_02290"
     CDS             254..691
                     /locus_tag="VFI64_02290"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HET7242148.1"
                     /translation="MAQLRKFSKVLVAVDGSEYSMNASEYAILITKEYGSQLIALHVI
                     TSDVSTIASTFSPQMEEIKKNAQEFFDKIQRKGEANRDIPLRTELIASSSVVGGIIDF
                     AEKENIDLIVVGTRGRSGLKRLLLGSVASGIVNYAYCPVMIVK"
     gene            1288..1731
                     /locus_tag="VFI64_02295"
     CDS             1288..1731
                     /locus_tag="VFI64_02295"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HET7242149.1"
                     /translation="MMRVCAISAVTLFIENMERSCSFYSRIPGFKLVYGGSATGSFTT
                     YEVGIGQSQNYPKTFLNLELSSPIGPDSKIDDKRKHFGRIIFHTEDVDKLYFYLKKNQ
                     DLSTAILIEDEPRDAPWGERYFHIREPDGYQISFAEPSKKRKTRA"
     gene            complement(1838..2173)
                     /locus_tag="VFI64_02300"
     CDS             complement(1838..2173)
                     /locus_tag="VFI64_02300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242150.1"
                     /translation="MEVIAFTLVSDVVAFTWTNFSAYLSETDFGSTPYSDNEILLMPF
                     NDSTSVSSSAYVSIIPCSSSANKDKFCVQTLLNISTGTSVTWTNGELTSYKSFEVEKL
                     HSHFWKSRK"
BASE COUNT          770 a          387 c          425 g          691 t
ORIGIN      
        1 agaagacaaa attatatgcg gggataatgt tgaaatataa aaaccgaagg gtaacgatat
       61 ggaacctaat aacacactgt aatagcaaat tgttcaatga ttagtatctt caaagcatat
      121 tagattattg tctaacccca cgaccatgca agaagggttc gaatccctct cctgatgttt
      181 gaagatagtc tcaaggcatg cagctgaatt aacatccacg tttttaaaca tctgtgtctc
      241 aaactagagt acaatggctc agttaagaaa attctcgaaa gttcttgtcg cagttgatgg
      301 ctctgaatat tcaatgaatg catcagagta tgccattttg ataaccaaag agtatggttc
      361 tcagctgatt gctttgcatg ttattacatc cgatgttagt acgattgcgt ctacattttc
      421 acctcagatg gaggaaatta aaaaaaatgc tcaagaattt tttgataaga tacagcgcaa
      481 aggtgaagca aaccgggata ttccattaag aacagaattg attgcatctt cttccgtagt
      541 aggcgggatt atagattttg ccgaaaaaga aaatatcgat ttgatagtag taggaacaag
      601 aggacggtca gggttgaaga gattattact cggtagtgtg gcgtctggta tagttaatta
      661 tgcatattgt ccagtaatga tagtaaagta agaaaaaagt ttgtaaatgc atacaacaat
      721 atcatatcta attattttca tttcaactat ttatttagat ggaaagggtt gtaattgata
      781 ctggcgatac aataagagtt gtatttagtg tccattctgc aggactaaaa atcctctctc
      841 gaatttgatt cacaaactgc caatacttgt ctgtgaagtt aattcacctc ctcattttcc
      901 gattcaattt aaccgaataa tgcctatgtg ctaatacaat ttacttaggg taaataacaa
      961 acttgctact ggaaagacat tactaaaaat caatttcatg atagtaacaa ctgcaaaatt
     1021 gatacctccc aagacagtag taatgtcact gcttcaaaaa ctgtcatatt tatagaagat
     1081 atagctgatc gttcttttgt aacaacattg tgaatgtagt gactttgtaa gactaccaag
     1141 gtgctatatc aatatcggtc ggaccaaata ccatggaatc tagattgtta tatctggtgt
     1201 tttagtcccg attattggga ccaaatattt tttcttagtc gcccttccta tagtaataat
     1261 aacttactct tctgtacata cgaaacaatg atgagagttt gcgcaatttc tgcggtaact
     1321 ttatttatag aaaatatgga gaggtcatgt agtttctatt ctcgcatccc gggattcaag
     1381 ctagtgtatg gaggttccgc aaccggttca tttacaacat acgaagttgg tattggccaa
     1441 tcacaaaatt atcccaagac atttctgaat ttagaattat ctagtccaat tggccctgat
     1501 tccaaaatcg atgacaaaag aaagcacttt ggaagaataa tatttcatac ggaggacgtg
     1561 gataagttat atttctatct gaagaaaaat caagacttat caactgctat attgattgaa
     1621 gatgagccta gagatgctcc atggggggag agatattttc atatacgtga accagatgga
     1681 tatcagatat catttgcaga gccatcaaag aaacggaaaa caagagctta agaaattgat
     1741 tctacagaaa taatcaaatg atcctgtgga aacaaaagta tcctgaaatg tttttcatgc
     1801 ggcaagaaaa ccagaatcga aatctatccc aatatttcta ctttcgagac ttccagaagt
     1861 gactgtgcag tttctccact tcaaacgatt tgtacgatgt taattctccg ttagtccaag
     1921 taacagatgt tcccgtggaa atattgagaa gggtctgaac acagaacttg tctttgttcg
     1981 cagatgaaga acatggtata atggaaacat aagcactgct tgacaccgat gttgagtcgt
     2041 taaatggcat aagtaatatt tcgttatcac tatatggtgt actgccaaag tcagtctccg
     2101 aaagataagc agaaaaattc gtccaagtga atgcgacgac atcactaact aaagtaaaag
     2161 ctataacttc cataaatcat atttctgaga gctgttattt caccctctct tttgatacaa
     2221 tcaatatagt tatgactgca taaaaacatc aatatgttgg ctatgcggaa cat
//
LOCUS       DASSIK010000126         3602 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1321237, whole genome shotgun sequence.
ACCESSION   DASSIK010000126 DASSIK010000000
VERSION     DASSIK010000126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3602)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3602
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1321237"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..600
                     /locus_tag="VFI64_02305"
     CDS             <1..600
                     /locus_tag="VFI64_02305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase family
                     protein"
                     /protein_id="HET7242151.1"
                     /translation="INSPITYYKENGCTFKIDVANVYFSPRLSTERMRIANMVKDNEV
                     IVNLFGGVGTYSVLIARGNKTAKVYSIDSNIFAHELCIENSTINKVNDRVISLFGDAK
                     LVVNSRLKEKATRVLMPLPEKAREFVDEAVSSLINGEGTVHFFAHVKADSKKDAIDKG
                     AVETNDAFKRYKISIDEVRVVREVGPRLYQIVSDVRVIS"
     gene            complement(633..830)
                     /locus_tag="VFI64_02310"
     CDS             complement(633..830)
                     /locus_tag="VFI64_02310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242152.1"
                     /translation="MRKSKTAGVTVLVISILAFSGYAYILLATEWGVLAMEITILIIV
                     GTLASIMAWIGYTMATAPKES"
     gene            complement(861..1358)
                     /gene="rimI"
                     /locus_tag="VFI64_02315"
     CDS             complement(861..1358)
                     /gene="rimI"
                     /locus_tag="VFI64_02315"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008999 -
                     peptide-alanine-alpha-N-acetyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HET7242153.1"
                     /translation="MQTALRRMGDYVFHKCEEIDLSSVIQINMSSLPEHYSDYFFHSI
                     LKELPDAFIVSEYSKEIVGYVMCKIEYGFSNFRKLGFVKKGHVVSVAVQQQHRGKGVG
                     RVLMEEAINGVILRKADEIYLEVRTSNDSAIKMYERINFQTKSRLRSYYRDGEDAYLM
                     ALELT"
     gene            complement(1447..2562)
                     /locus_tag="VFI64_02320"
     CDS             complement(1447..2562)
                     /locus_tag="VFI64_02320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242154.1"
                     /translation="MPELWLNYGSAEVVLDIKVENLNTLSNAKFKKLEEGVIDQQIAS
                     IPLENMKIVALGKSKSIARIITLLLSHAKKKGISNVLPESLPKDHSSLSKNMEGNSLS
                     LSKQTAEYILERGNDSKTLFVSCTRVNPMFGFGGVPTIILREFLRDKMTEAYCSRLTN
                     LPSPGTRPASLDIAIDVCKNMNAKCIQVISTMAGIDSLFFGSVSEAFEESIKRMEYLM
                     SDDYSNINSMIIGADNDSESHLTLSDSLNYLWNSVHILKNKGYGILIAENRKGLGSDA
                     LERLAEGRMSLEDSSSAREYIEGLEHLTFINELKEKYHLGVLSSLPHYYLRSRFGFEP
                     FSRSEVLLEKLLDINGKNQKILVIPDPNLALFKHVGK"
     gene            complement(2646..3209)
                     /locus_tag="VFI64_02325"
     CDS             complement(2646..3209)
                     /locus_tag="VFI64_02325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TATA-box-binding protein"
                     /protein_id="HET7242155.1"
                     /translation="MPQTKPIVSIENVVASATVNQTVNLNLITQIFPDVEYHPDQFPG
                     LVFRLKSPKTATLIFSSGKMVCTGAKSEEQAIKAVKNVVQKLKKGGIPIENEPQIEIQ
                     NIVASASLGGKIHLELAARVLPRSMYEPEQFPGLIHRMLDPKTVILLFASGKLVCTGA
                     KKESEVYRAVHNLHTLLEEKNLMIYEG"
     gene            complement(3340..>3602)
                     /gene="pth2"
                     /locus_tag="VFI64_02330"
     CDS             complement(3340..>3602)
                     /gene="pth2"
                     /locus_tag="VFI64_02330"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HET7242156.1"
                     /translation="VENTRFLHSNWVRTWLEEGQAKIILKVNSLQELVEIKNNAENIM
                     LPVATVQDMGLTQIQPGTTTCIGIGPAPSKIIDRVTNNLKLL"
BASE COUNT         1058 a          716 c          688 g         1140 t
ORIGIN      
        1 attaatagtc ctataacata ctataaagaa aacggatgta catttaagat tgatgtggcc
       61 aatgtgtatt tttctcctag actatcaacg gaaagaatga ggatagcgaa catggttaaa
      121 gataatgaag tgatagtaaa cttatttggt ggcgttggca catactctgt acttattgcg
      181 cggggaaaca aaactgccaa ggtatattca atagactcta acatctttgc acatgagtta
      241 tgcattgaaa atagcacgat taataaagtc aacgacagag ttatctccct ttttggtgac
      301 gctaagttgg ttgtgaacag caggttgaaa gaaaaagcaa cgagagtgct catgccattg
      361 cctgaaaaag caagggaatt tgttgatgaa gcagtttctt ctctaatcaa tggggaaggc
      421 acagtccact tttttgcgca tgttaaagct gatagcaaga aagatgctat tgataaggga
      481 gccgtagaaa ctaatgatgc tttcaaaagg tacaaaatct caattgatga agtgagagta
      541 gttagagaag taggcccaag gctatatcaa atagtttctg acgtgcgtgt aatttcctga
      601 aagaaataga ttgaagaaat agattgaact gatcatgatt ccttgggtgc cgttgccata
      661 gtatatccta tccatgccat tatgctcgcc agggtaccta cgattataag aatggtgatt
      721 tccatggcca atacacccca ttcggttgcg agcaatatgt aggcataacc actgaaagcc
      781 agtatagaaa ttaccagcac cgtgacgccg gcggttttac tttttctcaa atcaacactt
      841 cccaatttgg ctgatgatat tcaagttagc tctaacgcca tgagatatgc gtcttcccca
      901 tcacgataat aagacctcag tcttgatttt gtctgaaagt taattcgttc atacattttt
      961 atcgcagagt cattactcgt tctaacttca agataaattt cgtcggcctt cctcaggatg
     1021 acaccgttaa tagcttcttc catgaggacc ctcccgactc ctttgcctct atgttgttgt
     1081 tgaactgcta cagagacgac atggcctttt ttaacaaatc ctaactttct aaaatttgag
     1141 aatccatact cgattttaca cataacatat ccgacaattt cctttgaata ctcagaaact
     1201 atgaatgcat ccggaagttc tttgagtatc gaatgaaaaa aatagtccga ataatgttca
     1261 ggaagtgaac tcatattgat ctgtatcacc gacgacagat ctatttcttc acacttatgg
     1321 aatacataat cacccattct tcgtaaagca gtctgcaatc tacaagtatg agagatgaat
     1381 tataattatt ttaactttat ccgctggtat cgagcgtcaa attccgtgtg atttatcagc
     1441 tgccattcat ttgccaacgt gtttgaataa ggccagattg ggatctggaa ttacaaggat
     1501 cttttggttc ttcccgttta tatccaaaag cttctccaag agaacttcac tcctagaaaa
     1561 aggctcgaat ccgaatctag accgaagata ataatgagga agtgaagaga gcacacccaa
     1621 gtgatatttt tctttcagtt cgttaatgaa tgttaaatgt tctaatccct cgatgtattc
     1681 ccttgctgaa gaagaatctt caagagacat ccttccttca gcgagtctct caagtgcatc
     1741 cgagccaagt ccctttctat tttccgcaat aagtattcca tatcccttgt tcttgaggat
     1801 atgaacggaa ttccaaagat agttaagcga atcagacagt gtgagatgag attctgaatc
     1861 gttgtctgcc ccgattatca tagagttgat attgctataa tcatcagaca tcaaatattc
     1921 catccttttt atggattctt caaaagcctc tgaaaccgac ccgaaaaata gactatctat
     1981 tccagccatg gtagagatca cttgaataca cttggcattc atattcttgc atacatctat
     2041 tgcaatatct agagatgcgg gccttgttcc tggagagggc aaatttgtga gccttgaaca
     2101 atatgcctcg gtcatcttgt ccctcaagaa ttcacgcagt atgatagtgg gaacacctcc
     2161 aaatccaaac atgggattta ccctagtaca tgatacaaat agtgttttcg aatcatttcc
     2221 cctctctagg atatattcgg cagtctgttt actcagggac aaactattcc cttccatatt
     2281 tttcgaaagc gaagaatggt cctttgggag agattctggt aacacattgc tgattccctt
     2341 tttcttagcg tgacttaata gtaaagtgat tattcttgca atagatttgg actttcctaa
     2401 tgccacaatt ttcatatttt ctagcggaat tgaagcaatt tgttggtcaa taactccttc
     2461 ttcaagtttt ttgaacttcg cgttggacag agtgttaaga ttttcgacct taatgtctag
     2521 tactacttct gccgatccgt aattaagcca tagttccggc atgctttgat ttagaagaat
     2581 aggaaaaaca ttattattaa tcgattggat tccttgagct caatttgata ttgttagata
     2641 caatatcatc cctcatagat cattagattc ttttcttcga gtaatgtatg caagttgtga
     2701 acagctctat aaacctcact ttcttttttt gcgccagtac aaactagttt accacttgcg
     2761 aataataaga tcacagtttt cggatcgagc atacggtgta tcaggccagg gaactgttct
     2821 ggttcgtaca tactacgggg aaggactctt gccgcgagct caagatgaat tttaccccct
     2881 agactagcag aagcaacaat attttgaatt tcaatctggg gttcattttc aattggaatt
     2941 cctccctttt tcagcttctg aactacattt tttaccgctt ttatcgcctg ttcttcagat
     3001 ttggccccag tacagaccat ttttccggaa ctgaatatca atgttgccgt cttaggtgat
     3061 tttagtctga aaaccaaacc cggaaattgg tcaggatgat attctacatc aggaaaaatt
     3121 tgagtgatca agttaagatt aactgtttga ttaacagttg cggatgcaac gacgttctct
     3181 atactgacaa tgggtttagt ctggggcata ctaggttgcc tttataaagg gcagtatata
     3241 tacctgtttg gtagaccagt atcccaagct aagacacatg gattatttga agaaaaacgc
     3301 ttaagtacag aaattaatat cttctgttgt taagaatact caaaggagtt tcaagttgtt
     3361 agtcaccctg tcaatgattt tagaaggtgc gggaccaatt ccgatacacg tagtagttcc
     3421 tggttggatc tgagttaagc ccatgtcttg tacagtagct actggaagca ttatgttctc
     3481 ggcattattc ttgatttcaa cgagttcctg cagactgttc acttttagga ttatctttgc
     3541 ttgtccttct tctaaccatg tcctgaccca attagaatgt aagaatctgg tgttctccac
     3601 cc
//
LOCUS       DASSIK010000127         3413 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_123151, whole genome shotgun sequence.
ACCESSION   DASSIK010000127 DASSIK010000000
VERSION     DASSIK010000127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3413)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3413)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3413
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_123151"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..437)
                     /locus_tag="VFI64_02335"
     CDS             complement(<1..437)
                     /locus_tag="VFI64_02335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242157.1"
                     /translation="MKNNLGLQLIGNRTALILSLFALSAFSFHLENDILAESHPFILF
                     DPFEKSSSSPLHDSLDEICNDGQDNNGDGLVDENCGSESITKIVEDSVISHQNASIGT
                     PLPESEICNDGQDNNGDGLVDENCSNSQTSKESDDNHPPAMPQ"
     gene            819..1880
                     /locus_tag="VFI64_02340"
     CDS             819..1880
                     /locus_tag="VFI64_02340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242158.1"
                     /translation="MYFYNVHDIVKIQSEVVLYELEYFATESFDNPDLSVKVSSRIPG
                     GISLSRSITKPKPWDPSYIAYSEHLGSLGAKFSIEFSDEIIITVNKMISRSKHVLYVN
                     LVEPILRFMMISRNHVLLHSACVDLGGHGLLLSAPPDTGKTTTVLKCIKNGFAFLSDD
                     MTIIRLPNEALCFPKPMTISAHTFQTAVDVSDGHSNTGGMRIRSLVHSKGGRSFMHRL
                     AEYNVPIFTLNAIGQIVVKPPKFNVQKILNSVNIQKSTKVESLYFLERKGNECIILDT
                     ESALSTALENSDDAFLFPPYKDLLAHISINGQSAITLLSDERRMLEKFLSKINCFKLK
                     SDTRSWYNMITSYTESKIR"
     gene            2090..3136
                     /locus_tag="VFI64_02345"
     CDS             2090..3136
                     /locus_tag="VFI64_02345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242159.1"
                     /translation="MASIQSVNDYGHVNYTVAIGSLAASISLLGLNTTVTTLLPKGNA
                     GVNVQANQIVLISASLCAIVVSLFDWILGFFVIGMAFWMMASYELLGRKLYRNYALNV
                     IGARGSQLVLSLVLYYYLGVFGILLGFVISFFAFSRVYLKTIRLFSKRFEEIKDNFGT
                     SLHLYSYNLSNAFLLYFDKLLIAPIFGYATLGYYQLGFQFLMFFSMIPVSFYQYLIPE
                     EASGKKKNKLRLYGIGLSIVLTALLFVLSPYIIHSFFPKYIGSLNSMKILSIGIIPMM
                     VIGTLNSRFLSLHKTIYVVIGSAVYQTLQIILMLYLGNQFGIVGISIAVVLALTGQSL
                     TLFYCHLRSTKIGN"
BASE COUNT         1020 a          645 c          638 g         1110 t
ORIGIN      
        1 ttttgaggca tggctggggg atgattatca tcactttcct tgctagtttg agaatttgaa
       61 cagttttcat ccactaaacc atcaccgtta ttgtcctgac catcgttgca tatctctgat
      121 tccggaagag gagtaccgat agaggcattt tggtgactta ttacgctgtc ttccacgatc
      181 ttcgttatac tctcagaacc acagttttca tccactaaac catccccgtt attgtcctga
      241 ccatcgttgc atatctcgtc aaggctgtca tgaaggggac tgcttgaaga cttttcgaac
      301 ggatcaaaca atataaaggg atgagactct gctaaaatgt cattctcaag gtggaagcta
      361 aacgctgata aggcaaaaag cgatagtatt aatgcggttc tgtttccaat tagttgtaaa
      421 cctaaattat tcttcaattt tattgcaatc cctggtcaaa aacacagttg atatcgagtc
      481 cttttttgga aaacgaaact ttgtcataaa tcgatactaa tacgggagat ccacaatctc
      541 ttataaggta gaataagctc ttgaacgaca cgtcttttac gtgatcacta aatatttata
      601 caaaagcatc ttttctacct gatttcactc tctaaattat caaacataag actgcatatg
      661 actcatggtt tgtaaatctc gataataaca ggtgttaact cttcggtaac taattcacta
      721 tctttatcaa aataaaatta aaatcgaacg tgaactaaat aatcttagat atcagtttaa
      781 gagatggttt aaatttaata tgattggact tgatttgatt gtatttctat aacgtccacg
      841 atattgtaaa aatccagtcc gaagttgttc tatatgaact cgaatatttt gccactgaaa
      901 gttttgacaa tcctgattta tctgtgaagg tatcctcaag aattccaggt ggtatttccc
      961 tctcaagaag cattaccaaa ccgaaacctt gggatccatc atatattgcc tatagcgaac
     1021 atttgggttc gttgggagcc aaattcagta tcgagttctc cgacgagatt ataatcacag
     1081 ttaacaagat gatatcaaga tcaaaacacg ttctgtatgt caatctcgta gaaccgatac
     1141 ttaggttcat gatgatctcc cgaaatcatg tacttttgca ttctgcatgt gttgacttag
     1201 gcgggcacgg attacttctt tcagcacccc ctgatacagg aaaaaccaca actgttctaa
     1261 aatgcatcaa gaatggtttt gcatttctgt ctgacgacat gacgatcatt cgtttaccaa
     1321 atgaagccct ttgttttcca aaaccaatga ctataagcgc tcatactttt cagacggctg
     1381 tggatgtgtc cgatggccat agcaatacag gaggaatgag gataaggagt ttggttcatt
     1441 ccaaaggggg aaggagcttt atgcaccgcc tagcagaata caatgtgcct atctttacgc
     1501 ttaatgctat tggacaaata gtagtcaagc cacctaaatt caatgttcag aagatactca
     1561 attccgtgaa catacaaaaa tctacaaaag tagaatcact ctacttccta gagcgcaaag
     1621 gcaatgaatg tataattctg gacactgaat ctgccctttc tactgcactg gaaaacagcg
     1681 acgatgcctt tctgtttccc ccatacaaag atcttttagc gcacatatcc ataaatggac
     1741 aatccgcgat tactctattg tcagatgaga gaagaatgtt agaaaagttc ctctcaaaaa
     1801 taaattgctt taaattaaaa agcgatacta gatcatggta caacatgatc acgagttata
     1861 cagaaagtaa aattaggtag gcggatcgtt gttttttgtg caagcgcaga actcttgatt
     1921 ttattgatga ccgtgcagtg atattgtgga aaggaatgat tcctttaatg ggttattgtt
     1981 ttgaggaggg gaaatttata ttaaattact tagacatcat gagggtttaa tttatatcag
     2041 tgccggtaac atttttggcg cagcccttac tggaatattt tggcttttgt tggcgtcaat
     2101 ccaaagtgta aatgattatg gacatgtaaa ttacactgtt gcaattggct cacttgcggc
     2161 tagcatctca ttactagggc tcaataccac tgtcactacc cttctcccta aggggaacgc
     2221 tggtgtaaat gtccaagcga atcaaatcgt tttgatttct gcaagcctct gtgcaatagt
     2281 agtttcacta tttgattgga tactgggctt ctttgtaatt ggaatggctt tttggatgat
     2341 ggcgtcttat gagcttctag ggagaaagtt gtatcgtaac tatgcgttaa acgtcatagg
     2401 cgcaagaggc tcccagcttg tattgtcttt ggttctatac tattaccttg gcgtttttgg
     2461 gatcctgctt gggtttgtaa tttcattttt tgccttcagc cgcgtctatt taaaaacaat
     2521 tagattgttc agtaaaaggt ttgaagaaat taaagataat ttcgggacat cactgcacct
     2581 ttactcttac aatttatcaa atgccttttt gttatacttc gataagctcc taattgcccc
     2641 gatatttggt tatgccactc tggggtacta tcaattaggt tttcaattcc taatgttctt
     2701 tagcatgata cccgttagtt tttatcaata tcttatacct gaggaagcaa gcggtaaaaa
     2761 gaagaataaa ttaagactgt atgggattgg cctgtccata gtgttgactg cattattatt
     2821 tgttcttagt ccctacatca tccactcttt ttttccaaaa tatatcggat ctcttaattc
     2881 catgaaaata ctgagcattg gcataatccc aatgatggtt attggcactc ttaattcacg
     2941 atttctctct ctgcacaaaa caatttatgt tgtgattgga tctgccgtat accaaacttt
     3001 gcaaataatt ttaatgctat atcttggaaa ccaatttgga attgttggca tatccatagc
     3061 agttgtcttg gcattgacgg gccaatctct aactctattt tactgtcacc tgcgatcaac
     3121 caaaatcggg aattaatgat caactcttaa gaataatgat caatttaacg tatacagact
     3181 aatctaagtg ggcttgatat cctatgggac gaattactga tgattagtac aattatcagt
     3241 ctatcaaacg atagtgcatt tacataaggt cgaatatttg tactacgtgt atgcggtccg
     3301 gaatatgcga cttgattttc atgtggctgg gaatattttc atactccatc ggatagaata
     3361 aaagaattat ggatattctt agtcaatgta ccacgatatg caaaagtgaa caa
//
LOCUS       DASSIK010000128         2165 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_24955, whole genome shotgun sequence.
ACCESSION   DASSIK010000128 DASSIK010000000
VERSION     DASSIK010000128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2165)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2165)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2165
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24955"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(266..760)
                     /locus_tag="VFI64_02350"
     CDS             complement(266..760)
                     /locus_tag="VFI64_02350"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HET7242160.1"
                     /translation="MSNKSETPLELYEGDLAPEFSFRDRNGILHRLSDITKGKKVVVY
                     FYPRDFTPGCTTEALDFTKDYHKFESQGIEIIGVSPDDEDSHKKFTEKMKIPYPLAVD
                     SNNLISKSYGAFGPKKFMGKDYIGINRSTFLIDKDGRILKIFRKVKPAGHSSDVLQAF
                     GAMK"
     gene            1237..>2165
                     /locus_tag="VFI64_02355"
     CDS             1237..>2165
                     /locus_tag="VFI64_02355"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HET7242161.1"
                     /translation="MDYDIVVVGGGPAGLSAAYSASKMQARTIVLEKDDAIGQFVRTS
                     GVTWIDDMKRLKIPEKYYNPIKNYRIISQSNEVLISGQVAKSCVLDVRATYQYLASLA
                     AEAGSDIMVRSQVRDVTKDSSKISGVKAITPKGEIQFNSKLVIDASGFSSTVARKAGL
                     VNEWKRYGIGAEYECFCECVDPQTWILMVGSKYSSAGYAWVFPISRNRVRIGVGIGRP
                     ESRSDPLKNLHALLEKRIKPLDELGKIQPLELHYGLIPNEGCNRSSVHNGLMLVGDCA
                     GQSNPLVLEGIRFAIQFGRLAGVVGANSLSSGST"
BASE COUNT          681 a          406 c          442 g          636 t
ORIGIN      
        1 acgagaatgg aataagtacg ccgacttggt actagtgagt gcctctgaaa ccctaatcag
       61 cctccagcag cagacttcag tagacaatat atctaataat aatttggtag atgcactcgc
      121 gtacctgggc ataaaccgat caagcttaga aaagcaaatc ttgaacctat attgaggaac
      181 gcaaccaaac gaatatctgc ggcacacctc gtttaataac actagcattt ttgacaacgt
      241 agaaacaaaa atacgtagaa ttagatcatt tcatcgctcc aaacgcttga agaacatctg
      301 aactatgtcc agcaggtttt actttcctga atatctttag aatccgaccg tctttgtcaa
      361 taaggaaagt agatctgttt atcccgatgt agtccttacc catgaatttt ttgggcccaa
      421 acgcaccgta acttttagat ataagattat tgctatccac tgctaacgga tacggaattt
      481 tcatcttctc agtaaatttt ttgtgagagt cctcgtcatc tggacttaca ccaattatct
      541 caattccctg gctttcaaat ttatggtaat cttttgtgaa atcaagagcc tcggttgtac
      601 atcctggagt aaaatcgcgg ggatagaaat aaaccacaac tttttttccc ttggtaatgt
      661 cggatagcct atgcaatatt ccattcctgt cacggaatga aaactcaggt gctaggtctc
      721 cctcatacaa ttctaaaggt gtttctgatt tattactcac aaagatcatc ggagaatgac
      781 atacaaaaac tttacattcc aacatatttc agcacttcgg aaacgaatcc atatctttac
      841 gcattattat ttgtgatcta gtttgcttta gaaataaagt aaagcaaaac tacggtgtta
      901 atgtattatt caaaatgaat cctgtggagt tatcaaaaaa atgggatacc taatgttctt
      961 taaattattg attgccactc tcaactaacc tttgaaactt tgctttcgtc ttcaaggtga
     1021 attattacaa ttacaacctg atgtcgcaac ttgcgaaaga agcctatact gcagcgtttg
     1081 ttgattgatt atgtagaaag gagaatccct cagaaatctt tctgcaatca tttcattcct
     1141 ttgtagtcgt caaaaattta agcaatacaa aagattgata gattcggtat ttctaacatg
     1201 tatttcgagg cgaactgcag cgaggagtgt tgtttaatgg actatgacat agttgtcgtt
     1261 ggaggcggcc ctgcgggact ttctgctgca tattccgctt caaaaatgca ggccagaaca
     1321 atagtgctag aaaaagacga tgccatagga cagtttgtga gaaccagcgg agtaacatgg
     1381 attgatgata tgaaaagatt gaaaattcct gaaaaatatt acaatcccat taagaattac
     1441 agaattattt ctcagtccaa tgaagtattg attagcggtc aagtggccaa gtcatgcgtt
     1501 ttggatgttc gggcgaccta ccaatacctt gcctcattag ctgctgaagc aggttctgac
     1561 attatggtta gaagtcaagt acgtgatgta acgaaagatt cgtcaaaaat ttctggagtc
     1621 aaggcaataa ctccgaaagg agagatacaa tttaattcaa aacttgtgat agatgccagc
     1681 ggtttcagca gcacagtcgc aaggaaagct ggtcttgtaa acgaatggaa aagatatggt
     1741 attggagcag aatacgaatg tttttgcgaa tgtgttgatc cccaaacttg gatcttaatg
     1801 gttggaagta agtattcaag tgcaggatat gcttgggttt ttcccatttc aagaaataga
     1861 gtgaggatag gagtcggaat tgggagacca gaatcgaggt cggatccctt gaagaacctt
     1921 catgcactcc ttgagaagag aataaaaccc ttagacgaac tgggaaaaat tcagcctttg
     1981 gaacttcact atggattaat tccaaatgaa ggttgcaata ggtcatccgt tcataatggt
     2041 ttaatgcttg taggtgattg cgcagggcaa tccaatccac tagtcttaga agggataaga
     2101 tttgccattc aattcggaag acttgcaggc gttgtgggtg ccaattcatt gtctagtgga
     2161 tcaac
//
LOCUS       DASSIK010000129         7652 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_818668, whole genome shotgun sequence.
ACCESSION   DASSIK010000129 DASSIK010000000
VERSION     DASSIK010000129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7652)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7652)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7652
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_818668"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..421
                     /locus_tag="VFI64_02360"
     CDS             <1..421
                     /locus_tag="VFI64_02360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HET7242162.1"
                     /translation="THHSMNVNKDIYADAEYVERTQGMENNFLLDSRERLNFLTEHIP
                     GATNLPYTMLGTQESILRNTSEIKRFLENRRISSESEVIAYCGSVGTLSGLAYYALKM
                     AGVKNVRLYSKSFKDWKRLGKPVDEFNDANYWDLSAE"
     gene            complement(517..1191)
                     /locus_tag="VFI64_02365"
     CDS             complement(517..1191)
                     /locus_tag="VFI64_02365"
                     /inference="COORDINATES: protein motif:HMM:NF019429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfuA-like protein"
                     /protein_id="HET7242163.1"
                     /translation="MFQGMNRPLVFLGPSLNREDAQKILDAEYRDPAKKGDFLKLATF
                     SEGKRIIGFVDGVFLHDYPPSPIEVYQLLVMPNIMLVGSSSLGALRAVELEKYGMAGV
                     GKIFELYRKKILFADDEVAVTFVQGENILQSEAMIDIRFNLFLAKRLGIIDEYCRKMV
                     TKVGKNLYFPYRNYDDIIAISQKEYPPLSEQLEKFKLHITKNRDSLKARDTIKLLKYL
                     KILAEH"
     gene            complement(1176..2477)
                     /locus_tag="VFI64_02370"
     CDS             complement(1176..2477)
                     /locus_tag="VFI64_02370"
                     /inference="COORDINATES: protein motif:HMM:TIGR00702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcaO-like family protein"
                     /protein_id="HET7242164.1"
                     /translation="MQSRKKWTKSGTSRVKPVEQTLREVLPLTEKIGVTRLADITDMD
                     ILKIPNYSAVLPGTEDYIWVYSGKGLTKHHAQASALMESIERYCSLPSGAPKNMIQGS
                     YDDLSKKFNVLHPSSVVEPMTFQYTEDMVMDFLPGFDLMNKEFLLVPAPIALFKYSAR
                     QPAINPFAYHHTNGLASGNVMEEAICHSLCEVIERDAISMAQLKASAVHFHILKTVEH
                     SLNSNGYYVTPITATDYVDDNSIFPDVEIHDIEFEPITRLGKKFQKANIPLIIKNVTS
                     EIGIPTFNAASIEWITHDYGYLVEGHGTHPDARIALLRAITEVSQSRAANIQGARDDL
                     RKIPYGENNTDDQRSWQFMKSRDMIRFSDIKSFINEDILDDIKLILTKLDENDLNQVI
                     VVNLTNPSVGIPVVRTIVPGLEMYKITKSVIGRRGRACFKV"
     gene            complement(3235..4890)
                     /gene="pheT"
                     /locus_tag="VFI64_02375"
     CDS             complement(3235..4890)
                     /gene="pheT"
                     /locus_tag="VFI64_02375"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: protein motif:HMM:TIGR00471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009328 - phenylalanine-tRNA ligase
                     complex [Evidence IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HET7242165.1"
                     /translation="MPVVSFPVRKIKEFFPGYDVNSIVDILPYIGLDIEYVDMDEIRV
                     EYSPNRPDFSSYYGIARSLKGLLEIEMGIPNVKIIQGKDYVISVNKSVSHIRPFIVGL
                     VAKNGSLDDESIKNLVGMQEDLHNGLGRRRAKASIGFHDLSKLEFPLRYDTVSSNASF
                     SPLGFKEAVTIAGILRETEAGRKHGKILPSTKIFPVLLDGSDQIISLPPIINGDSTKI
                     NRNSRNLFVEATGTNLSLLEDVLAIMAITLSDMKFNIESVVIFYGKESIVSPNLQLRK
                     FEGLELSYVNNVLGIEITPELALKCLKKSRLDGLIDGCKITCNVPRYRTDISEAIDLV
                     EDIGIGFGIFNLDPSLPAYRFSGKKSRNTIISEKIRQTLVGMGLIENVNFSLISRTLE
                     HEYVNRDIDYKDVVAVVGSKSEEHEILRSSLLPSLLRSLSHNIHEEYPQRLFEIGKVF
                     SLEEDPFERWSLCSVIAHDEADYTEAKSIVQTLMGVGLGKELEAISAIIPTYLEGRGA
                     YLYVADTKVGVIGEISPSIIENFKIRVPVASFEIDLTKLVTFV"
     gene            complement(4878..6383)
                     /locus_tag="VFI64_02380"
     CDS             complement(4878..6383)
                     /locus_tag="VFI64_02380"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HET7242166.1"
                     /translation="MTQPSLHPIERKILLLLSSRPTQSAEMNTITKELSMPIDQVRRG
                     IEWLKFKNLVKIVTETSTYLSTVLKEGTPEAKLPERKIVELISKIGGNSIDIKDLAKE
                     KKISPSEFNAGLMNALKNGWITKIGTTITINTSSQKSSPEEKLLHRLLKEEQINISNL
                     GNDEIRAYELLRKRPGFISEKNESNHKIHLLQAGHNISQTLTQSDSEDKVIKITSELL
                     RSGKWKHLKFRGLDVSSPVQNHSLGRTHPLTDLISEVKEIFISMGFSEIEGPMIQSSF
                     WNFDVLFTPQDHPAREMQDTFYIHGNMPTEDIDNTVLNRVSDIHSKCWKYKWNVEEAT
                     RHVLRTHTTAVTLRYLAENKQDEARIFSVGRVFRNEKMTYKHLMEFHQVEGVVTGKDL
                     TLRDLMGLQTLFYSRLGIKKVKFWPTYFPYTEPSLQSMVFIEETGKWIELFGMGIFRP
                     EVTASVGLTGNVLAWGGGLERIAMIRYGLNDVRELYENRLSWLRSVPFCRL"
     gene            6459..7610
                     /locus_tag="VFI64_02385"
     CDS             6459..7610
                     /locus_tag="VFI64_02385"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HET7242167.1"
                     /translation="MTHEFRNVSAGNEANEFDVTPWSVTGSVNYDNLIEKFGTQRITA
                     DLLKKLASMTGEIHPLLELDFFFSHRDFDWILDRYQKGEKFYLYTGRGPSGKVHLGHL
                     MPWMFTKYLQDKFDAPLLFQLTDDEKFLHGHNKTMAEISAFTDENILDIIAIGFKPEK
                     TKIIVDTKHIKHLYPMALEIAKRITFSTARAVFGFTNSTNIGMIGFPPIQAVPCFLPS
                     LIENKPTPVLIPAAIDQDPYWRITRDIAEKMGYYKPAQIHSKFLPSLETSGKMSSSKP
                     KTAVFTTDDSETVEDKVSVAFTGGQPTVALQRKLGGNPDICPVFSYLQYMFDNPKESK
                     ERALKCRSGNLLCGECKQDLSSNSVSFLTDFQKRREKAKDMVSQFMYKE"
BASE COUNT         2307 a         1546 c         1387 g         2412 t
ORIGIN      
        1 aacacaccat tctatgaatg ttaacaaaga tatttacgct gatgcagaat atgtggaaag
       61 aactcaagga atggagaaca atttcctgtt ggattcaaga gagaggttaa actttctaac
      121 tgaacacatc cccggagcaa ctaatctccc ttacactatg ttgggaacac aagagagtat
      181 tcttcgcaat acttctgaga taaagcgttt cctagaaaac aggagaatat cttcagaatc
      241 agaagtaatt gcctattgtg gtagcgtggg taccctgtca ggacttgctt attatgctct
      301 gaaaatggct ggagttaaga acgtaagatt atactcaaaa tcatttaaag attggaaaag
      361 gttaggaaaa ccagttgatg aattcaacga cgcaaattat tgggatcttt ctgccgaatg
      421 aattttaggg gagtcttggg aaacttgaat atgattttag atctagattt agatgataac
      481 gtatactgca gctgattttt tcacaaaatt gctatcttaa tgttcagcta atatcttcaa
      541 atatttgagc aattttatcg tatctctagc cttaaggctg tccctgttct tcgttatatg
      601 gagtttgaat ttttccaatt gttcagatag tggagggtat tctttttgcg aaatagcgat
      661 aatatcatca tagttacgat agggaaaata aagatttttg ccaacttttg ttaccatttt
      721 tctacagtac tcatcaataa tccccaatct tttggcaaga aacagattaa atcttatatc
      781 gatcatagcc tcagattgta atatattttc tccttgaaca aaggttacag caacctcatc
      841 atcggcaaat agaatctttt tcctgtaaag ctcaaatatt ttccctacac ctgccattcc
      901 atatttctca agttcaacgg ccctcaatgc cccaaggctg gatgatccta caagcataat
      961 atttggcatt accaatagct ggtaaacttc aatgggtgaa gggggataat cgtgtagaaa
     1021 aacaccatca acaaatccaa taatccgttt tccctcagaa aatgtagcca attttaaaaa
     1081 atcacccttc tttgccgggt ctctatattc tgcatctaaa atcttctgtg catcttcgcg
     1141 atttagactt ggaccgagaa aaacaagagg tctgttcata ccttgaaaca cgctcgtcct
     1201 cttctaccga tgaccgattt cgtaatttta tacatttcaa gtcctggaac aatagttctt
     1261 actacaggga tgccaacact cgggttagtt aggttgacaa caattacttg atttaggtcg
     1321 ttttcgtcaa gtttggtaag aatcaactta atgtcatcca aaatatcttc attgataaaa
     1381 gacttgatgt cagagaacct aatcatgtct ctcgatttca tgaattgcca tgacctttga
     1441 tcatccgtat tgttttctcc atatggaatt tttcttaggt catctctagc tccttgtatg
     1501 ttagcggccc tggattggga cacttccgtg attgccctga gtaaagcgat tcttgcatca
     1561 ggatgcgtac catgtccttc tactaaatag ccataatcat gggtaatcca ttctatgcta
     1621 gcggcgttaa aagtggggat cccaatctct gatgttacgt tctttattat tagcgggata
     1681 ttcgctttct ggaatttttt accaagtcta gtaataggtt caaattcgat atcatggatt
     1741 tctacgtcag gaaaaataga attgtcatcc acatagtcgg tcgcggtaat cggtgtaaca
     1801 taatatccat tcgagttgag agagtgctcg actgttttta gaatgtgaaa atgtactgca
     1861 ctagccttga gttgtgccat gctaatcgca tctctttcta taacttcaca tagagaatgg
     1921 catattgctt cttccattac attgccagaa gcaaggccat ttgtgtggtg atacgcgaag
     1981 ggatttattg ctggctgcct tgccgaatat ttgaagagag caatgggtgc aggtaccaac
     2041 aagaattcct tattcattag atcgaaacct ggaaggaaat ccattaccat gtcttcagta
     2101 tactgaaatg tcatgggctc aacaacactc gaaggatgaa gtacgttgaa ttttttgcta
     2161 aggtcgtcat aggacccttg gatcatattc tttggagcgc ctgaaggaag tgaacagtat
     2221 ctttcaatac tttccattaa tgcactggcc tgagcatggt gcttggtcag acctttgcca
     2281 ctatataccc aaatatagtc ttctgtacct ggtagcaccg cagaataatt tggaattttt
     2341 agaatatcca tatcagttat gtctgccagt ctcgttaccc cgatcttctc ggtaagaggt
     2401 agaacttccc taagggtttg ttcaactggt tttacccttg acgttcctga cttcgtccac
     2461 ttcttcctac tttgcaagtc aagcggcgtt aggttcaata caatatacta actttttctt
     2521 tgttcatatc aattttactg actccatagt cttatatttg acctgaatga atttgacttt
     2581 gatataaatt tgaataatag caacaccaac gaaagtatac aaactgttag tagaatacta
     2641 aagaaagctg cggaagatcc cgaatttagg aaaacttttt tcttaaatca ccaagagatt
     2701 ctaaaagagt atggagtatc tgacgaaatc aagtatataa tagttaagtg cctcagtgat
     2761 ttgactaact agccaaatcg gaaagtatct ataaattgga atctaagtaa aatgataaca
     2821 agtaaggata aaagctaaat atcgcacaat ttgcgactcc tatgttctta cgtatctttt
     2881 ttgaagatcg tagaattgtg cctatctgtc atttgaagtt gcaatgtgtc tgagtatatt
     2941 atttcagtga gttttcaaca gtcttgataa ccagttattg gaatgtatat atccgcatag
     3001 gccatttgaa tcaactctaa gtataattcg ttaccaaact tgttcggaac ttacaataaa
     3061 gttcaaccgg atgtaaaaaa tataccccgt ctctgaccca caactagtca ttggtagccg
     3121 tacaccatgt gtaccctcct agtgcactct ctataacggg gcaccatttc cattttctag
     3181 atggaacaag gataacttga tctcgaggtt agacgttata aacatactgc gaatctaaac
     3241 aaaagtaacc aacttagtca aatctatctc gaacgacgca acaggaaccc ggatcttaaa
     3301 attttcaatg attgaaggag aaatctctcc aataactcca acctttgtat ctgcgacata
     3361 caagtatgcc cctcgacctt ctaaataggt cggaattata gctgaaatag cttcgagttc
     3421 ttttccgagt ccaacaccca ttaatgtctg aacaattgat ttcgcttccg tgtaatccgc
     3481 ttcatcatgt gctatcacgg agcaaagact ccacctttca aaaggatctt cctctaacga
     3541 aaacaccttt ccgatttcaa aaagtctttg tggatactct tcgtggatat tatgagataa
     3601 cgaccttagt aaagaaggaa gaagagaact tcttaagatt tcatgctctt cactttttga
     3661 tccgactact gctacaacat ccttatagtc aatatctcga ttgacatatt catgttcaag
     3721 tgtcctgctg ataagactga aattcacatt ttctattaac cccattccaa cgagggtctg
     3781 cctgatcttt tcagatatta ttgtgttgcg actctttttt cctgagaacc tgtacgcagg
     3841 aaggcttggg tctagattga atattccaaa gcctatgcca atatcttcca ccaaatcaat
     3901 agcctcacta atatctgtcc tataacgggg aacattacat gtaattttac aaccatcaat
     3961 caggccatct agcctactct ttttgagaca ttttagagca agttctggtg taatttcaat
     4021 gccaaggaca ttgtttacat aactcaattc cagtccttca aatttcctaa gttgcagatt
     4081 gggagacaca atactctctt taccataaaa aataactaca ctttctatgt taaatttcat
     4141 gtcggatagg gtgattgcca taattgctag cacatcttct aatagggata aattagtgcc
     4201 agtggcttcg acgaataaat ttctggaatt acgattgatt tttgtgctgt cgccgttaat
     4261 tatcggcgga agtgaaataa tctggtccga accatcgaga agtacaggaa agattttagt
     4321 ggaaggcaaa attttaccat gttttcttcc tgcctcagtc tctctcaaaa tcccagctat
     4381 tgtgaccgcc tctttgaatc ccaaaggtga aaacgaagcg ttggacgata cagtgtcata
     4441 tcttaaagga aattctaatt ttgagagatc gtgaaaacca atagatgctt tagctcttcg
     4501 ccttccgaga ccattatgaa gatcttcttg cattcctacg aggtttttta tggattcatc
     4561 gtctagactg ccattttttg ctactagacc aacaatgaat ggtcttatgt gagaaactga
     4621 tttattaaca ctaatcacat aatctttgcc ttgtatgatt ttgacattgg gtatccccat
     4681 ctctatttca agaagccctt tcaaacttct agcaattcca taatatgacg aaaaatctgg
     4741 cctattcgga ctatattcta ctctaatttc gtccatatcg acatattcta tatcgagtcc
     4801 tatgtaaggt aaaatatcca ctatactatt aacatcatat ccgggaaaaa attctttaat
     4861 ctttcgaaca ggaaagctta caaccggcaa aatggaacac tccgtaacca cgacaatcga
     4921 ttttcataca gttctcgtac atcatttagc ccgtaccgga tcatggctat tctttcaaga
     4981 ccgccacccc atgccaaaac gttaccggtg agccctaccg atgcagttac ctctggtcta
     5041 aatattccca tgccgaacaa ttcaatccac ttgcctgttt cctcaataaa taccatggat
     5101 tgaagagatg gctctgtata cggaaaatag gtcggccaaa attttacttt ctttatgcca
     5161 agccttgaat agaaaagcgt ttgtaatccc atcaagtccc tcaaagtaag atctttacca
     5221 gtaaccaccc cttcaacttg gtggaattcc attaggtgct tatatgtcat tttttcgttt
     5281 ctaaaaactc tgccgactga gaaaattcta gcttcatcct gtttattctc agctaaatat
     5341 ctaagagtta ctgctgtcgt atgagttctc aatacatgcc ttgttgcctc ttcaacgttc
     5401 catttatatt tccagcattt cgaatgaata tctgaaactc tatttagaac agtgttgtca
     5461 atgtcctcgg taggcatatt gccatgaata tagaacgtat cttgcatctc acgtgcaggg
     5521 tgatcctgag gtgtaaacaa tacgtcaaaa ttccaaaaac tagactggat cattggccct
     5581 tcaatttctg aaaagcccat cgagatgaag atttccttca cttcgcttat caagtctgtc
     5641 agagggtggg tcctgccaag actatgattc tgaacgggag aagaaacgtc caaacctctg
     5701 aatttcaaat gtttccattt gccagaacgc aataactcag aggtgatctt aataactttg
     5761 tcctcagaat cagattgtgt taatgtttgg gaaatattgt gtcctgcctg taataaatgg
     5821 atcttatgat tgctttcatt tttttcactt ataaacccag gtcgcttcct tagcaattca
     5881 taagcccgga tctcatcatt tcccaaattc gatatgttaa tctgttcttc tttcaataac
     5941 ctgtgtaata atttttcctc aggagaggat ttttgagaag atgtattgat ggtaatagta
     6001 gtaccaattt tagtgatcca accgtttttt aacgcattca tcaaaccggc attaaattct
     6061 gaaggagaaa tctttttctc cttggcaagg tcctttatat ctattgaatt accaccaatc
     6121 tttgagatga gttctacaat ctttctttca ggcaattttg cttcgggtgt cccttccttc
     6181 aaaactgtgc tgagataggt agatgtctcg gtaacgatct ttactagatt cttaaacttt
     6241 agccattcaa ttcctcgtcg tacttggtct attggcatgc tcaattcttt tgtaatagta
     6301 ttcatctcgg cagattgagt aggtctactg cttagtagaa gaagaatttt cctttcgata
     6361 ggatgtaaag aaggctgagt catctgaaga tgaaagaatc aggaggggta cactttttaa
     6421 acctttaaac ctcagttcat cttagcacag aaactgacat gacccacgag tttcgaaatg
     6481 taagcgcagg aaatgaagcc aacgaatttg atgttactcc ttggtcggtc actggttcag
     6541 ttaactatga taatttaatc gaaaaatttg gaactcaaag gataacagcg gacctgttga
     6601 aaaagttggc gtctatgact ggagaaattc atccgctttt agaactcgat ttcttcttct
     6661 cacatcgtga ttttgactgg atactggata ggtatcaaaa gggagaaaaa ttttatcttt
     6721 ataccggccg gggtccttcg ggcaaggttc acttaggtca tctgatgcct tggatgttta
     6781 ctaagtatct gcaggacaaa ttcgacgccc cgctgctgtt ccaactaacg gacgacgaaa
     6841 aattcctaca tggacacaac aagacgatgg cggagatatc tgcttttact gatgagaata
     6901 ttttagatat tattgcaatc ggatttaaac cagaaaaaac aaagatcata gtcgatacca
     6961 aacatataaa acatctttat cccatggcac ttgaaatagc aaaaaggatc actttttcta
     7021 cagcaagagc tgtgtttggc tttacaaatt caactaatat aggtatgata ggatttcctc
     7081 caatccaagc agtgccttgt tttttacctt cattgattga aaataaacca acgccagttt
     7141 tgatacccgc agcaattgat caagatcctt attggagaat aacacgtgat attgcggaga
     7201 aaatgggtta ttataaacct gcccaaatac atagcaaatt tttaccatca ctagaaacat
     7261 ctggaaaaat gtcttcctcc aaacctaaaa ccgccgtatt tacaactgat gactctgaaa
     7321 ctgtagaaga taaggtctca gtcgcgttta ccggtggaca accaaccgta gcgttgcaga
     7381 ggaaactagg cggtaatcct gatatctgtc cagtcttctc ttatctacag tatatgtttg
     7441 acaatcctaa agaatcgaag gagagagcgt taaagtgtag aagcggaaat ctattatgtg
     7501 gcgaatgtaa gcaagacctc tcgagtaact ctgtatcgtt cctcactgat tttcaaaaac
     7561 gtagagaaaa ggccaaggat atggtgtcgc aattcatgta taaggagtaa atagagataa
     7621 catcaatagg attgatgaaa aaattggtag gt
//
LOCUS       DASSIK010000130         2723 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_911167, whole genome shotgun sequence.
ACCESSION   DASSIK010000130 DASSIK010000000
VERSION     DASSIK010000130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2723)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2723)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2723
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_911167"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            300..425
                     /locus_tag="VFI64_02390"
     CDS             300..425
                     /locus_tag="VFI64_02390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242168.1"
                     /translation="MCFEFEIPNKAKYKNKNEIVEDREIEPELEKVEEPVTVSAR"
     gene            complement(619..1239)
                     /locus_tag="VFI64_02395"
     CDS             complement(619..1239)
                     /locus_tag="VFI64_02395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242169.1"
                     /translation="MLIPKRSTKSSGLLIIFFLYSITTFSVSIISQCIQNTDARSEQL
                     VDSNNNNLMINMQAPDNWNSGIVSQTVAKLNWRLNGLTATNNDLSGFFVVVNLPSLAN
                     FALPLGQKTGLLSWIISHYATINNESDVTLADGSSGHLYSISVSADQLHRLNAPIDKG
                     FDGVMITTKQQGGTYIILYAAQQGRMGEFKDTFTNILHSVSFRKSG"
     gene            complement(1253..1657)
                     /locus_tag="VFI64_02400"
     CDS             complement(1253..1657)
                     /locus_tag="VFI64_02400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242170.1"
                     /translation="MPTDSSEEIFPVKNLVNLLKLPRGSVTIKSNGQPAFSLQFKGDN
                     VLLDIIDTSFFDFADDTDNIGLFSKLKTAKKFAQFLNDNHLTFTILRKGKEALSLGYE
                     THPTFSRLITRSNNIQIDSVKEIAKLKHDMDK"
     gene            complement(1670..1948)
                     /locus_tag="VFI64_02405"
     CDS             complement(1670..1948)
                     /locus_tag="VFI64_02405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242171.1"
                     /translation="MEMEHNPSKNKYSERSDKSQKENPNEWAGLLAQLVDKITGKDVS
                     ITYQFENLEIDVPKATGPNGQELGSAKWNINGKIVISSEVQEKDSPQK"
     gene            2374..>2723
                     /locus_tag="VFI64_02410"
     CDS             2374..>2723
                     /locus_tag="VFI64_02410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242172.1"
                     /translation="MVIGTTFSVIIAGLIVSSLLLSVGFQFRQYHVLAQNSTNATTSS
                     IDRFNIKLTSNDGKILHRGIITSEHGQPENLDVQRTVILPNRNDGKDYSGILSFTASK
                     PVEVLLGHRMPIDE"
BASE COUNT          843 a          485 c          494 g          901 t
ORIGIN      
        1 agcaaaagta gtccgagctg tgcttcaaca taaaaatatg attagcaaag ttattaacgg
       61 tttaagcctg gtaggggagt tggtaaaaaa ccgtattttg tggacatgaa gtatatttta
      121 atgatcgatt tatctcccgt ccgatcaaat ggccctcttg catctccatg catctcagta
      181 tgcagataca agatgcccct tcattcaggc ataatttgat atgtttatcg atagttttga
      241 ggaactaata gtggttgaat caaaaagtcc tttatacttt gaatgtctac tattatctca
      301 tgtgcttcga attcgaaata ccaaataagg cgaaatacaa gaacaagaat gaaattgttg
      361 aagatagaga aatcgagcct gagcttgaaa aagtagaaga acctgtgaca gtttcagcga
      421 ggtaaatagc tcttttattt ttttgttttg cgcactatat ctgcctcatg aatatcaatg
      481 acatcgaatt ttgaatctaa tctaagctaa agacgtttct gagagaattc aaagtagaca
      541 ctgtacctac ttcggaaatg tcttattttc agatcctata gggctatttg gaatggaatt
      601 aatccgtacc ggtgcatttt atccactttt acgaaagctg acagaatgaa gtatattagt
      661 aaaagtatct ttgaattcac ccatccgacc ttgctgtgcg gcatatagta tgatgtacgt
      721 tccaccctgt tgttttgtag ttatcataac tccatcaaat cccttatcaa ttggagcgtt
      781 tagacgatga agttggtccg cactcacaga tatagaatat aaatgtcctg aagacccgtc
      841 agctaaagta acatctgact cgttatttat tgttgcatag tgtgatatta tccaagagag
      901 cagtccggtc ttttgaccga ggggaagtgc gaagtttgcc aatgaaggta aatttacaac
      961 aacgaagaac ccactcaaat cattattggt tgcagtaagg ccattcaatc gccagttcaa
     1021 tttagcgaca gtttgtgaga ctataccact attccagtta tcgggagctt gcatatttat
     1081 cattaaattg ttattattac tgtcgacaag ttgttcactt cttgcatctg tattttgtat
     1141 gcattgtgat attatagaga cactaaaagt agttatagaa tataggaaaa atattatcaa
     1201 taaccctgaa gatttagtgc ttcgtttagg aattaacatt gcacatgtaa cattacttat
     1261 ccatatcatg ttttagcttc gcaatctctt tcacgctatc tatttgaata ttgttactac
     1321 gagttattaa ccgcgaaaat gtaggatgag tttcgtatcc aagactcaat gcttctttac
     1381 ctttgcgaag aatagtgaat gtcaagtggt tgtcatttag gaattgtgca aatttttttg
     1441 cagtttttag cttggaaaat aatccaatat tgtcagtgtc atctgcaaaa tcgaaaaatg
     1501 atgtatctat aatatcaagt aatacattat cgcctttaaa ttgcaacgag aatgctggct
     1561 ggccatttga cttaatagtg acactccctc taggcaattt cagaagattg actaaattct
     1621 ttaccgggaa gatctcttcg gaggagtccg tgggcatttg ttactacatt tatttctgcg
     1681 gactgtcttt ttcttgtact tcgctagata tcactatctt gccatttatg ttccatttag
     1741 cgcttcccag ttcttggccg ttaggaccag ttgccttagg tacatcaatc tccaagttct
     1801 caaattgata agtgatagaa acatccttgc cagttatctt gtcgactagt tgcgctagca
     1861 atccggccca ttcattggga ttctcttttt gcgatttgtc gctcctttcg ctatacttat
     1921 ttttagatgg attgtgctcc atttccattc taaactctat aggacataat gattaataaa
     1981 catctgtgta cgaccttcta ttccaggttg cacagagtca aattgattta tcatttttaa
     2041 ttaatacctg tatcatagta tcataatcat tgacaatcaa atttgaaaag ttgtagctgc
     2101 aaaattgtaa taacatacaa acgatgaagc ctccattaga ggcattgtta gttgcaaata
     2161 cgttcttttt agcgtagaga agaaagtcga agtgatacgc agtgtagaaa aacattagga
     2221 taataaagga atacttgatc cactcgtgat atgcttgtgt ctcttaaagt ttccacatgg
     2281 gtgataatat ttcacattac cgatttttca ttttagaaaa tataatacga atagatcatt
     2341 cttaataatc accgttgtta tcgctaaatt aacatggtaa ttggaactac attttcagtt
     2401 attatagcgg gattgatagt gagttcacta ttactaagcg tgggctttca atttaggcaa
     2461 tatcatgtac tagctcagaa cagtacaaac gctactacat cctcgataga ccgatttaat
     2521 atcaagctaa catctaatga tggcaaaatt ttgcacagag gaataattac atccgaacat
     2581 ggccaacctg aaaatttaga tgtacaaaga actgtcattt tgccaaatcg aaatgatgga
     2641 aaagattatt caggtatttt atctttcacc gcaagcaaac cagtagaggt tcttttaggc
     2701 cacagaatgc caattgacga aga
//
LOCUS       DASSIK010000131         2464 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_222803, whole genome shotgun sequence.
ACCESSION   DASSIK010000131 DASSIK010000000
VERSION     DASSIK010000131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2464)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2464)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2464
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222803"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            670..1431
                     /locus_tag="VFI64_02415"
     CDS             670..1431
                     /locus_tag="VFI64_02415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HET7242173.1"
                     /translation="MFDSSVLLIIIGIVAGILGSLVGIGGGIIMSPALAFLGLPPSQV
                     ASTSLIAVSSTSVSSTLAYARLKKIQYSIGLKLATFSGPGAISGALISVGISPLHFRL
                     LFVILLLATGLYLLFRNSVLKECRFDSEPVWIKVLFYFGAFVAGLISSLFGIGGGIIF
                     VPLLVIIIRMNMSSAVPTSQLALMSTALVGTITHIIIGNPEYIYALLLSIGSFVGAQI
                     GAKISARFKDSTLRYIFALLLMAVSIRFILGVFIE"
     gene            1956..>2464
                     /locus_tag="VFI64_02420"
     CDS             1956..>2464
                     /locus_tag="VFI64_02420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HET7242174.1"
                     /translation="MVYVDGYAVRYLDINDSNNSEEKETLLLLHGIGASAERWLHVVP
                     LLKKYFRIIVPDIVGFGYSDKPTVEYSINFFVNFVSNFLSLTNAKRTHIIGSSFGGLV
                     AAEFALKFESVVNKLVLVSPAGSMKTSTKTLDEYILAALYPTNENARRAFFDMAYDPQ
                     TVTEDTIKD"
BASE COUNT          732 a          413 c          455 g          864 t
ORIGIN      
        1 ttttattttt gttttgttgt tccagattct gatattaacc ccattagata tttaaatgaa
       61 tttatttaca atcacttctt gataatttaa ctacaacaat tctagattcc aattttagta
      121 atattcgctt attttatgtg ggattgatct atttcatagt gcggatacta aaatactcca
      181 tgaggattta gttatttgcc tcagtaggga tgcaaaatta ctcagttatt ctttttccag
      241 aaatgaataa ctccttcctg taatgtagga tttctataat ttttcagttt gagaaattca
      301 ctctccattt cattttttct tgatatatga aatttttctt tgatatgatg ttctatttca
      361 gaaatgtcca gtgactggag gcatatgtta caatttatag attccactat gaacatagta
      421 tgtatatcta ttatttcatg ttaactagtg ggagggctcg tatgaatgca aagggaggtc
      481 tgaattgata gttgattcat ggtatctgtt aaattcatca catattctct aaaaagtaat
      541 atatagagtg gcgctacaga agttttagtc attaggagta ttgcagcctc ttgcgaattc
      601 tgaatgtcct acttttagtc aacgtcttaa taaatcaatc aaatgttttg atgggtcgca
      661 gtgtgccaat tgtttgatag ttcagttctg ttgataataa ttggtatagt agccggtatt
      721 ttaggatcct tggtcggtat aggtggtgga attataatgt ctcccgcatt agcctttctt
      781 ggtcttcctc catctcaagt ggccagcact agtctcatcg cggtttcctc tacaagcgtt
      841 tcttctacac ttgcttatgc aagattaaaa aaaatccagt actccatagg tctcaaattg
      901 gcaacgtttt ctggccctgg cgcgataagt ggtgcattga tttctgtagg tatctctccc
      961 ctacatttta gattactctt tgtaatctta ctgcttgcaa ctggattata tctcctattt
     1021 cggaactctg ttttgaagga atgtagattt gactccgaac cggtttggat taaggtgcta
     1081 ttttactttg gtgcattcgt agccgggctt atttccagtt tatttggaat tggaggtggc
     1141 atcatttttg ttcctttact ggtaataata atcagaatga atatgtcatc tgcagtacca
     1201 acatcacaac tggcactaat gtccactgca ctagtgggta cgattactca tattattatt
     1261 ggaaatccag aatacattta tgccttactc ctatccatcg gctcgtttgt cggagcgcag
     1321 ataggtgcaa aaatttcagc aaggtttaag gattccacgc ttcgctatat ttttgccttg
     1381 ttgttgatgg ctgtctcgat aagatttata cttggtgtct tcatcgaata gaagtaacga
     1441 taagctacat atgtatgaac cttgaatatt taattatagc aacgataatg gtgtcctttt
     1501 ggatctataa gatgatcagc tggtttcaaa gtacaaaact tcggttctgc tagtgatgta
     1561 tctaatttag aactactttt tattaaaata tgattgagat aagggaatct tttaaaataa
     1621 atgtcttaga atacgttact caaaacattc accaaatagt ttcatcaagt gaattcagca
     1681 aaaatctcac tattttatcc tgagataaca aagagttggt aaacgtgata attgataaat
     1741 tttcgttcca tgagtatcta attcacagat ataaattcaa taatgtgaca atgacattgt
     1801 gaattgtcga atctagatga attaaagggg gacactaata ctcgatatta aaacggatct
     1861 ataaccacca attttctatc gtaataagaa tataaattag ataatattac tcccacatca
     1921 gagcagaaat atttttgatt gaaatgccca ataaaatggt ttatgtagac ggttatgctg
     1981 tacgctatct cgatataaat gactctaaca attcagaaga aaaagaaacg ctattactat
     2041 tgcatggaat aggagcctcg gcagaaagat ggcttcatgt cgtaccgctt ctgaaaaaat
     2101 attttaggat aatagttcct gacatcgttg gatttgggta tagtgataaa ccgaccgtag
     2161 aatatagtat taatttcttt gtcaatttcg taagcaattt tttgagtctg acgaatgcta
     2221 aaagaactca tataattggt tcctcgttcg gagggttggt ggcagcagaa tttgccctga
     2281 aatttgaaag tgtggtaaac aagctggtac ttgtctcacc tgcaggcagt atgaagactt
     2341 ctactaagac tctcgatgag tacattctag ctgcattgta tcccaccaat gaaaacgcaa
     2401 ggcgcgcctt ttttgacatg gcttatgatc cgcaaacagt aacggaagac acaatcaagg
     2461 attt
//
LOCUS       DASSIK010000132         2239 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_223444, whole genome shotgun sequence.
ACCESSION   DASSIK010000132 DASSIK010000000
VERSION     DASSIK010000132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2239)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2239)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2239
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_223444"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..653
                     /locus_tag="VFI64_02425"
     CDS             <1..653
                     /locus_tag="VFI64_02425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242175.1"
                     /translation="LFMLGSRDYPKLIQDKLMQIYSAGVKHKQLDSDTIDVAEAIQCN
                     RLSYYERTEPENDALPQIIQRISKLGFRDAMGSKAAEYKVDNLTLIVTPDLVFEKDFV
                     VNIYPVSTIPDSLLPGDMLYTNACLFALDREVGVVVYVTPDGQQTQYFVGKSNRMFEQ
                     VVRRARILSILLGERKTPVIEPSQYCLNCKYNDRCFPQQKDNSPQLLEGLFGLGKK"
     gene            complement(1032..1628)
                     /locus_tag="VFI64_02430"
     CDS             complement(1032..1628)
                     /locus_tag="VFI64_02430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242176.1"
                     /translation="MNRRVVYIASGVMIITILGIVLVINNFGLSVGNFSSVKLPDLKL
                     PSVNVGEQIFNEEALRDARSLVVSIKDVHVEPVNKTRAKVNVIFDIFNPNKATVMLEV
                     ISYNLYTNSGRMVSGDIGEKPTGFVGSQANIFPIVGNGSIMVKDSKVIEREGPSETSL
                     DSTVGNTQHYIINGTFSYKQTSSFQSSGGENNYSLTFP"
BASE COUNT          737 a          417 c          412 g          673 t
ORIGIN      
        1 ctttatttat gcttggcagt agagactatc cgaagctaat acaagataaa ttgatgcaaa
       61 tttactctgc tggggttaaa cataaacagt tagattcgga tacgattgat gtagcagagg
      121 caatccaatg caatagatta tcttattatg agaggaccga gcctgaaaat gatgcccttc
      181 cccagataat tcagagaatt tcaaaattag gctttcgaga tgctatgggg agtaaagctg
      241 cagaatacaa ggtggataat ctaactttaa ttgtgactcc tgacctagtt tttgaaaaag
      301 acttcgtcgt caatatctat cctgtttcga ctattcctga ttcacttctt cctggggata
      361 tgctctatac aaacgcatgt ttgtttgctc ttgacaggga agtaggagta gtagtctatg
      421 tcacaccaga tggccaacaa actcaatatt ttgtaggaaa aagcaaccga atgtttgaac
      481 aggtcgtaag aagggcaaga attcttagta tattgctggg cgaacgaaag acgccagtca
      541 tagagccaag ccaatattgt cttaattgca aatacaatga taggtgtttc ccgcaacaaa
      601 aggacaacag cccccaacta ctggaaggcc tctttggttt gggcaagaaa tagcaacagg
      661 agtattgccg gtatcaaaaa tagaagcagc aagattactc aaaacagtaa gagaatgatt
      721 gtggtgctta tccattgctc tgaaacaaac cgcttaatta cctctgttcc taatacaatt
      781 caggaattgg gcgccatccc taaatttttc tgttgattat atcttctact tcttgcacca
      841 aagactaccc ctcctaagat aacgaaaatc aatgctgtta ttgcataagt tatcaacaga
      901 tcggccatac acaatcttcg ctggactaga atatttttgt ttctctttga gactcttctc
      961 tgagagtaga aaaaggacac ttagacagaa acttcaatgg acaatagacc taatggttgg
     1021 atagacactc ctcaagggaa ggtaagcgaa taattattct ctccacctga tgactgaaaa
     1081 ctagaagttt gcttgtaaga aaatgtcccg tttataatat aatgttgggt gttccctaca
     1141 gtactatcca agctagtttc acttggacct tctctttcga tcactttgct atccttaacc
     1201 attatgctgc cattcccgac aatggggaaa atgttggctt gggaacccac aaaccctgta
     1261 ggtttttcgc caatgtctcc tgaaaccatt cttccagagt tggtatataa attgtaagag
     1321 ataacttcta acatcacagt agctttgttt ggattaaaaa tgtcaaagat gacattcact
     1381 tttgcccgag tcttatttac aggttccacg tgaacatcct taattgaaac aactaaggat
     1441 cttgcatctc gcagtgcctc ttcattaaaa atctgttcac ccacgttgac tgatggcaat
     1501 tttaaatccg gcaactttac acttgagaaa tttccaacac taaggccaaa gttatttatt
     1561 actaagacta ttcccaagat cgttattatc ataactccag aggcaatata cacaaccctt
     1621 ctattcaatt acttaacaaa cagttactgt gaaggtataa taatttatgt ttaatatgca
     1681 gaaaaaagga tacaactgcc ttacgccaga tatagtgagt catgagattt ccactaattt
     1741 gagtaatagt tatgcagatt gattgatgaa cgaatgacaa attctgatga cttatttagc
     1801 cgatttaaac acatttagtg ttattatgat aatggttaat tcgagtatag accaaaaaat
     1861 tatttaaaga ataattgatt ggaaactgtg attgacatcc gaacatattt cttacgactt
     1921 ctgagagcat cccagatata ttgatgattt catcaatgga ttactaaatt taatgataat
     1981 ctccaaaatc aattcaattg cggacagtga aaaaactgag atacttttca acgttcgtca
     2041 aacaaatagc gaatgcgaat tatatgaagt taattacagt cgacaaatct tgtacgcaag
     2101 agtgggacaa tggattttac tgagcagaaa gtattatctt catttgtggg taggaatgac
     2161 gttatgatcg ctgatacaat agaatcaatt tcggaagaat ctgtcaaaat gttagataag
     2221 ctggcaatga tcccagtaa
//
LOCUS       DASSIK010000133         2454 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_26615, whole genome shotgun sequence.
ACCESSION   DASSIK010000133 DASSIK010000000
VERSION     DASSIK010000133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2454)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2454)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2454
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_26615"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..299)
                     /locus_tag="VFI64_02435"
     CDS             complement(<1..299)
                     /locus_tag="VFI64_02435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242177.1"
                     /translation="MMFGRGKIKTGEYVFVSQKYDRFNRLIIGRINATNNPRIHVQGF
                     YVIPTGLINKVLSGQGEGRLKEVLSNPDPNNCIFMLIDTVETGTFNEEVDENTSK"
     gene            472..1029
                     /gene="thpR"
                     /locus_tag="VFI64_02440"
     CDS             472..1029
                     /gene="thpR"
                     /locus_tag="VFI64_02440"
                     /inference="COORDINATES: protein motif:HMM:TIGR02258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008664 - 2'-5'-RNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 2',3'-cyclic phosphodiesterase"
                     /protein_id="HET7242178.1"
                     /translation="MITRVFVSAEITNKEKVAAAQENILIQAGSDSSKLKKVEKQNLH
                     FTLTYIGDVDETLLERIKINFSEIKFTSFEFNYGNIGGFPNSNRARIVWLGVDKDGHK
                     NISKLWQVVSEKLANFAKKDNDPFIPHITLFRLRNGSINLDTLISNHTSATGISDRID
                     HLTVKQSTLTPLGPRYTDIITMTSK"
     gene            1026..2417
                     /gene="cca"
                     /locus_tag="VFI64_02445"
     CDS             1026..2417
                     /gene="cca"
                     /locus_tag="VFI64_02445"
                     /EC_number="2.7.7.72"
                     /inference="COORDINATES: protein motif:HMM:TIGR03671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HET7242179.1"
                     /translation="MKHIDQVISQALILCEPQSKDSMKLHKIAQQVTDMIDKSITTID
                     DDRILGVSVGGSYAKGTWLTEDNDIDFFVKINPNVNKREFEQLGTRIGLSALSKYRPY
                     LRYSDHPYVEAKIQKVRINIVPCYQVNRGQWKSAADRSPFHTIFMTENLDENMKGQVR
                     ILKRFLKSIGIYGSQLSVGGFSGYVTEILILRYRSFKEAVSLVANMNRDKQLIALNEP
                     DPQYLPSFNSSIIIIDPIDPRRNLGAAISTESLGKFILAARSLIQIPSIAYFKSTENM
                     FDIRVLEKVKPNLLIVEFKIRKRSPDVIWGQLKRSLTALSKQLSISGFNAFGSTCITD
                     ENEYAAFVFLVEFTTLPPFTLNVGPEIFRMRDTETFIEKKMHKLTPFWINGNMRVVTI
                     AERNNLSAKEYLSKLLSGNVSNVGINKDIIEDLRTGFDVYRGTERKLNKFIKSALSRL
                     ILNDGRIIKYQRD"
BASE COUNT          814 a          443 c          475 g          722 t
ORIGIN      
        1 attttggatg tattctcatc tacttcttcg ttgaatgttc ctgtttctac cgtatctatc
       61 agcataaaaa tgcaattgtt gggatcagga tttgagagta cttctttaag ccttccttcc
      121 ccttgaccgg acagtacctt attgattaat cctgtaggaa ttacataaaa gccctgaaca
      181 tgaattcttg gattattggt ggcatttatt cgtccaataa ttagccgatt aaatcggtca
      241 tatttttgcg atacgaaaac atattctcct gtcttaatct tacctcgacc aaacatcatc
      301 agactgcctc gaacaaaata tttattattt gctatatttc caagcttttt ttgttaagtg
      361 taaaattgtc cagactattc tggtacagct ctaaaaatga aattaaattt cttaacaatg
      421 cgtccttcaa ataatatatg atagtttggc agtataccat aagttagatt gatgataaca
      481 agggtatttg tttcagcaga aataaccaac aaagagaagg tggctgccgc ccaagaaaat
      541 attcttattc aagccggttc cgacagttca aaactgaaaa aagtggaaaa gcaaaacctc
      601 catttcaccc ttacttacat cggagatgtt gatgaaacat tacttgagcg aatcaaaata
      661 aacttttcgg agatcaaatt cacgtctttt gaattcaatt atggaaatat tggtggattc
      721 ccaaactcaa atcgtgcacg aatagtttgg cttggggttg acaaggatgg gcataagaac
      781 atatcaaagc tttggcaggt ggtttcagag aagttagcaa attttgcaaa aaaagataat
      841 gatcctttca ttcctcacat aactttattt agacttagga atggaagcat taacttggat
      901 acactgatct caaatcacac ttctgctacg gggatttcag accgtataga tcatctaaca
      961 gtgaagcaga gtaccttaac cccacttggt cctagataca ccgatattat cacaatgaca
     1021 tctaaatgaa acacatagac caagttatat ctcaagcttt gatattatgt gaacctcaaa
     1081 gcaaagactc catgaaatta cataaaattg cgcaacaagt gactgacatg atcgataagt
     1141 cgattacgac aattgatgat gatagaatat tgggagtgtc tgttggtggc tcatacgcca
     1201 aaggaacatg gcttaccgaa gataacgata tagatttctt tgtaaaaata aaccccaatg
     1261 taaataaacg tgaatttgaa cagcttggga ctaggatagg actttctgcg cttagcaaat
     1321 acagaccata cctccggtat tcggatcatc cgtatgttga ggcaaaaata caaaaagttc
     1381 gaattaatat tgtgccttgt tatcaagtta ataggggaca atggaaaagt gctgctgata
     1441 gatctccgtt tcatactatc ttcatgactg agaatttgga tgaaaatatg aaaggtcagg
     1501 taagaatttt gaaaaggttt ctgaaatcta tcgggattta tggctcccag ctttcagtgg
     1561 gaggtttcag tggatacgtg acagaaattc tcatcttgag atatcggtcg ttcaaagaag
     1621 ccgttagttt ggtggcgaac atgaatcgtg acaaacagtt gatagcacta aatgaacccg
     1681 accctcagta ccttccttca tttaatagta gtatcataat tatagatcct attgacccta
     1741 ggaggaactt gggtgcggca atttcaaccg agtctttggg gaaattcata ttggcagccc
     1801 gctcgttaat tcagatccct tcaatagcat atttcaagtc gacagaaaat atgttcgaca
     1861 taagggtcct tgaaaaagta aaaccaaatc tacttatcgt agaatttaag ataaggaaaa
     1921 gaagccctga tgtcatatgg ggacagctaa aaaggagctt aactgcccta tccaagcaac
     1981 tcagcatatc gggattcaac gcatttggta gcacatgtat aacagatgaa aatgaatatg
     2041 cagcatttgt attcctggtg gaatttacaa cccttccacc attcacactt aatgtgggac
     2101 cagagatatt cagaatgcgt gatacagaaa catttattga gaaaaagatg cacaagctaa
     2161 ctccattttg gattaatgga aatatgaggg tcgttacgat tgcggagagg aataatctat
     2221 ctgcaaaaga atatttgtct aagctacttt cgggaaatgt cagtaacgta ggaatcaaca
     2281 aagacatcat cgaagaccta cgcacgggct ttgatgttta ccgtggaact gaaagaaagt
     2341 taaataaatt catcaaatca gccttgagtc ggttgatctt aaatgatgga agaattatca
     2401 aatatcagag agattgagga tcttaggtct ctgacggctt atccttcttt tgaa
//
LOCUS       DASSIK010000134         2294 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_912310, whole genome shotgun sequence.
ACCESSION   DASSIK010000134 DASSIK010000000
VERSION     DASSIK010000134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2294)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2294)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2294
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_912310"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            562..1248
                     /locus_tag="VFI64_02450"
     CDS             562..1248
                     /locus_tag="VFI64_02450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242180.1"
                     /translation="MTPKKLILFSSAILGTMGVLVSVIIIAIGGGFSGPGPSLLNPPS
                     AKDLWAVGNNLANGMELNYSLTDQSMAPPNMKEDVSMKFLDEGKDWRVLLTILNNNVS
                     KYNLSLSKALLIPTGILDEPTQKILMPISKSIFAIRDIAREPKYLVVGAIWDTVNIGA
                     STQSVRITGVEKIDTPAGSFNTYILGYEIGKKQSKMYLVKELPLPIKAEVYNLNGTLQ
                     YTYELKSIKR"
     gene            1417..2244
                     /locus_tag="VFI64_02455"
     CDS             1417..2244
                     /locus_tag="VFI64_02455"
                     /inference="COORDINATES: protein motif:HMM:NF012673.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HET7242181.1"
                     /translation="MLQILKDACRRAYAETEKLMGTPSAGTKFNQGAGGDISRRIDLV
                     AEKAVLQTVRESSKNPTIIGEECGVIEGNEGFLIMDAVDGTTNALRGVPFCCCSLAYA
                     TDPKLSSVTEAAVMDLANGDLFYASKNHGAYLNERRIHVAQLDNLDFNDLIAGVNISG
                     ISKKTIVSLTPLIVRLKHVRHFGANALELCYLARGFLDLCIDLRMKIRPTDLAASYLI
                     VHESGGRMFDPVGKPFDSTVYLGSALSYIAVPHITVFDYFEDNIKYFLKETGARAGI"
BASE COUNT          703 a          438 c          494 g          659 t
ORIGIN      
        1 cccaattttt ggggtttgtc aaatactacc tattgctgtc atccgcttct tttgaaactg
       61 atcatattat cgggacaatt tttcataact attgataaaa cgttgaagtt caacagtcat
      121 aagcaggaga gtatgtgaaa atgacgtaca tactaatttt tataatttct aaaaaaatta
      181 aggtgcctac taagtgatat tgcttcgaaa ctccgatttt ccattgtaac tacgagcaaa
      241 atgcatgata attgtcagac gacttcagag attacaaatc tgagaaaaca gaatcctgaa
      301 ggggttggct caataagtta gctttctgtg aatcgccaga tcgtcaatta ttaatccttt
      361 caacgtttct gtctttattt tgagagttgt cactagtaag ataaacatta tggaagtagg
      421 tcaagtctcg gaagcggact cacaaagatc tgttgaggat acaactatgc ataatttgca
      481 gtctatcgga tccttgtaca ttgtttcttt tgaaagaaac caagtcttaa agtattagtt
      541 gacagaaatt agaagaacag tatgactccg aaaaaattga ttcttttttc ctcggcgatc
      601 ttaggtacga tgggtgtctt agtgagcgtc attataattg caataggagg tggcttttca
      661 ggtcccggtc cttccctttt gaatccacca tccgcaaaag atctttgggc agtaggaaat
      721 aaccttgcta atggcatgga gttaaactat tccttaacag atcaatctat ggcaccccct
      781 aacatgaagg aggatgtttc catgaaattt cttgatgaag gcaaagactg gagagtactt
      841 ctgactatat taaataataa tgtgtcaaag tacaacctta gtctttcgaa agcattactg
      901 atacccacag ggattttaga tgaaccaaca caaaagatct tgatgcctat cagcaagtct
      961 atttttgcca ttagggacat tgccagggag ccaaaatatt tagtcgtagg tgcaatttgg
     1021 gacaccgtaa atatcggtgc ttcaacccaa agtgttagga ttacaggagt tgagaagatt
     1081 gatacacctg ccggttcttt caatacgtat attctcggct acgagattgg caaaaaacaa
     1141 agcaagatgt atttggtcaa agagttaccg ttaccaataa aggctgaagt gtataatctt
     1201 aatgggacac tccaatatac atatgaattg aagtcgataa aacgctgact tcccgactga
     1261 cttgatactt gcgtgtgcta ctaaatgatg gatatcaata aaatgagctc tagttcaata
     1321 ctgcttagcg tgccaggtca tctttcatcg tactagtgtc acaacatatt tgatatgcac
     1381 agagtatttt atatcagtgc tgcttgagat attcaaatgc tacagatcct aaaggatgcg
     1441 tgcaggagag cttatgcaga gactgagaaa ttaatgggta cccccagtgc aggtaccaaa
     1501 ttcaatcaag gcgcaggtgg cgacatctct agaagaattg accttgtcgc agaaaaggca
     1561 gtactccaaa ctgtgagaga gtcctctaaa aacccgacaa taattggaga ggagtgcggg
     1621 gtgatagaag ggaatgaagg ttttctaatt atggacgcgg tcgatggcac tacgaatgcc
     1681 ttaaggggag tgccgttttg ttgttgctcc ttagcgtatg caactgatcc caagctaagc
     1741 agcgtgactg aagctgcagt aatggatcta gcaaatggag atctatttta tgcatcgaaa
     1801 aatcatggag cctatctgaa tgaaagaaga atccacgttg cacaacttga taatcttgac
     1861 tttaatgatc tgattgcagg cgtcaatatt tcgggcatct ctaagaaaac tatagtatca
     1921 ttaacacctt tgattgtaag actgaagcac gtgaggcatt ttggtgcaaa cgcattagaa
     1981 ctatgctacc tggcacgggg tttccttgat ctgtgcattg acctaaggat gaagatccgt
     2041 ccgacagatc tcgcagcatc ttatctcatc gtgcatgaat cgggtggaag aatgtttgac
     2101 cccgtaggaa agccttttga ctcaacagtg taccttggat ccgctctatc ttacatagct
     2161 gtcccgcaca ttacagtttt cgactatttt gaagacaaca tcaaatattt tctaaaagaa
     2221 acaggcgccc gggccgggat ttgaacccgg gtcgaaggag tgacagtccc ccatactgga
     2281 ccggactata cggt
//
LOCUS       DASSIK010000135         2878 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_224018, whole genome shotgun sequence.
ACCESSION   DASSIK010000135 DASSIK010000000
VERSION     DASSIK010000135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2878)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2878)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2878
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224018"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(320..607)
                     /locus_tag="VFI64_02460"
     CDS             complement(320..607)
                     /locus_tag="VFI64_02460"
                     /inference="COORDINATES: protein motif:HMM:NF015632.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0147 family protein"
                     /protein_id="HET7242182.1"
                     /translation="MASKKELREKENQGRLSNAIITLDTIARNNNIQRNIRNMIREVM
                     TAVKDEKNGSVSVRAANAISMLDNVTQNPQMQSHIRTMIWQVVSTLESIRE"
     gene            712..1401
                     /locus_tag="VFI64_02465"
     CDS             712..1401
                     /locus_tag="VFI64_02465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242183.1"
                     /translation="MEDKQEETNHSISKPPLDLLFNPSLLSRKDVWDINVTTLLEMLL
                     RILSESGRRDLRICGVAALSSSMIYRLKVESIFRLEKIAMMKRGIEVTESNAEVPMLK
                     PIEIPFRIESTYPVTLEELLHVLENMIMDLANPRKQRKQLSLEAVETFDFNDYLVKFE
                     QIVKSYEEMIFDIVSADGFVLFRKFTERMNSIEIVRCFIAVLYLAMKGLVIIDQEDYG
                     DFMISYSKKSD"
     gene            1433..1945
                     /gene="scpB"
                     /locus_tag="VFI64_02470"
     CDS             1433..1945
                     /gene="scpB"
                     /locus_tag="VFI64_02470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HET7242184.1"
                     /translation="MAKKYPQDETMARLEVALYSAGRPVSLEELMKASGSGSKEITLR
                     TVRDLVQRTRGTFKALEISELQHETFVFQVKPSYTPLVRRFAQQPIIPNSALKTLSYI
                     AYEQPITSKRLVQIRGSQVYSHLKELRAHSFIEYENLGRTKIYRTTRKFQEYFGINDL
                     IALKNSLVQK"
     gene            2013..2399
                     /locus_tag="VFI64_02475"
     CDS             2013..2399
                     /locus_tag="VFI64_02475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8e"
                     /protein_id="HET7242185.1"
                     /translation="MRKSIETLSGRKLTGGRKMVARGRRKYEIDRYPSEPVVGTQKTI
                     FRRVRGGNRKISFKSVEFANISDPVEKKTTKSKILRVTKNPTNKDFERRGVVTKGAII
                     DTDLGSARVVSRPGQHGIVNAILIKR"
     gene            2482..2787
                     /locus_tag="VFI64_02480"
     CDS             2482..2787
                     /locus_tag="VFI64_02480"
                     /inference="COORDINATES: protein motif:HMM:NF014032.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0048500 - signal recognition particle
                     [Evidence IEA];
                     GO_function: GO:0008312 - 7S RNA binding [Evidence IEA];
                     GO_process: GO:0006614 - SRP-dependent cotranslational
                     protein targeting to membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle subunit SRP19/SEC65
                     family protein"
                     /protein_id="HET7242186.1"
                     /translation="MKDYGHVIIWLDYFNKNLSKRKGRRISKKLAIYDPTLEELSKAS
                     KDLNLAISDENINNQARYPRRPYVRSGYLMLPKSEKKSNLLNKIARKLNERRNASKN"
BASE COUNT          974 a          494 c          574 g          836 t
ORIGIN      
        1 agtgcttgta aaccacggtg aaaaatcgaa atcagaaaac gtggcaagtg tcgtttactc
       61 tcgtttgagg gttaagtcaa ctgtgccaga tagcagagaa atcattagac taagataaag
      121 ctttcatgcg tatgcttttt agatacctca aattattata ataggagttg gcgattcgat
      181 atagatgtgt aaattgtaat attgtcctga gcggggaggg tgcttccaga cattatctcg
      241 caaacccaaa tcacaagtta gagaagcttc ctcctccgct aaaaccagta aagaatgtag
      301 agaataagta atagttacat tattctctta tgctttctaa agtggatact acctgccata
      361 tcatggttcg tatgtgagat tgcatttgag ggttttgagt tacgttatct agcatgctta
      421 tcgcattggc agcacgaaca gaaacagagc cattcttctc atccttaact gcagtcatta
      481 cctcccttat catatttctt atatttctct gaatattatt atttctagca atcgtgtcta
      541 gtgtgataat tgcatttgaa agacgtcctt gattctcttt ttctctcaat tccttctttg
      601 aagccatgac catccccaat tctgtttcta attatatagt gacttttgaa tgtttttgtc
      661 cgtatttatc ggagcaatat aattaatact aaccacgata actcttcgat aatggaagat
      721 aaacaggagg aaacgaatca tagtatatct aaaccacctc tggatcttct gtttaacccg
      781 tctctcttat ctagaaaaga cgtatgggac ataaatgtaa ctaccctgct cgagatgtta
      841 ttgagaatac tttccgaaag tggaagaaga gatctaagga tctgtggtgt cgcggcactt
      901 tcctcgtcga tgatatatcg gcttaaggta gagagtattt ttagattgga gaagatcgcc
      961 atgatgaaga gaggtatcga ggtaaccgag agtaacgccg aggtccctat gcttaaacca
     1021 attgaaattc cattcagaat cgaatcaaca tacccggtaa cattagaaga acttcttcac
     1081 gtattggaaa atatgattat ggatcttgca aatcctagga agcaaagaaa gcaacttagc
     1141 ttagaagcag tagaaacttt tgattttaac gattatttag ttaagttcga acagattgtc
     1201 aagtcctacg aagagatgat ctttgatatt gttagtgcag acggatttgt actatttcga
     1261 aaattcaccg agagaatgaa ctcaatagag attgttagat gtttcatagc agttctttat
     1321 ctcgcgatga aaggtttagt cattatcgat caagaggact atggagactt tatgatttct
     1381 tattctaaga aatctgatta atgttaattc gaggaattgg agatcgagtc agttggctaa
     1441 gaaatatcct caagacgaga ctatggcgag gttggaggtc gctctttatt cggcaggaag
     1501 acccgtatca ttagaagaat tgatgaaggc gtcgggttcg ggttcaaagg aaatcacgct
     1561 tagaacagtc agggatttgg ttcagagaac aagaggcact tttaaagcat tggagatcag
     1621 tgagcttcaa catgagactt ttgtatttca agttaaaccc tcatatactc cattggtaag
     1681 gcgatttgct caacaaccca taattccaaa ctctgcattg aaaacactct catacatagc
     1741 ttatgagcaa ccaatcacat ctaaaaggct agtccaaatt cgtggaagtc aggtttattc
     1801 ccatctcaaa gaattaagag cacattcttt catcgaatat gaaaacctcg gcagaacgaa
     1861 aatttatcgg actaccagaa aatttcagga atattttgga attaacgact taattgcttt
     1921 aaaaaatagc ctcgtacaaa aatgattcta ataatagcat tttactgcag atagaaacac
     1981 cttaataccg tttttttcaa ttcgaagatg gaatgagaaa atccatagag actctttctg
     2041 gacgaaaact taccggaggc aggaagatgg ttgcaagagg gagaagaaaa tatgaaatag
     2101 ataggtaccc gagtgaacca gtagtaggaa cacagaaaac tatattccgg cgagttagag
     2161 gtggcaatag aaaaatctca tttaaaagcg tagaatttgc aaatatttcg gatcctgttg
     2221 aaaaaaagac gacaaaatca aaaatactaa gagtaacgaa aaaccctacc aataaggatt
     2281 ttgaacgacg gggtgtagtc actaagggag caataataga taccgacctc ggttcagcaa
     2341 gagttgtttc aagacctggt caacatggca tcgttaacgc tattttgatt aaacggtaat
     2401 tagactagcc ctgttagctc cgtaatttaa aagctccttg gattaaacat atttaatata
     2461 gcaatgcttg ttgattagcg aatgaaagat tatggccatg tgattatatg gttagattat
     2521 tttaacaaaa atctttcaaa gcggaaaggc cgacggattt caaaaaaact ggcaatttac
     2581 gatcctacat tagaggaatt aagcaaggca tctaaagatt tgaacttggc aatttctgac
     2641 gaaaatatca ataaccaagc cagatatccg agaaggccct atgtcaggtc aggatatcta
     2701 atgcttccca aatctgagaa gaaatcaaat ttgctaaata aaattgccag gaaattgaac
     2761 gaaaggagaa atgcgagcaa aaactagtaa ctttatggga tcttgatgag cgaaatccgg
     2821 gaaaatcgta tgaatattaa gttttatcac ataactaact tttattgaca gaataaaa
//
LOCUS       DASSIK010000136         2563 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_820545, whole genome shotgun sequence.
ACCESSION   DASSIK010000136 DASSIK010000000
VERSION     DASSIK010000136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2563)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2563)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2563
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_820545"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..478)
                     /locus_tag="VFI64_02485"
     CDS             complement(<1..478)
                     /locus_tag="VFI64_02485"
                     /inference="COORDINATES: protein motif:HMM:NF040322.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242187.1"
                     /translation="MSETRLIKIAFWNLQNLFGTYKNYIATDFEFTPENGWTDNVKNT
                     KLDNLSKVIRSMDFGIDGIEDKEPDLLGLSEVEDRAILQELINRIGRDKYLIADYKDS
                     PDLRGIDVCLVYSRDIFELIDTKAYSIDFRYPTRDILLTHLKVRSNDADLYILVNHW"
     gene            complement(560..1081)
                     /locus_tag="VFI64_02490"
     CDS             complement(560..1081)
                     /locus_tag="VFI64_02490"
                     /inference="COORDINATES: protein motif:HMM:NF013730.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HET7242188.1"
                     /translation="MKEILISIMIIIICGLPGVGKTTVAKELAPLVNAVILSTDKIRK
                     ELFSRPMYGWRERRLIYDVMVLIAKYLDKVGINCILDATFTRELSRHEIKEKIGLAGK
                     DFQIIECICPEDIVILRLRHRKHDYSDADFSVYKKMKRIYEPVKEAHITIDTSKLSKT
                     DIRSIAAKILNKR"
     gene            1562..1882
                     /locus_tag="VFI64_02495"
     CDS             1562..1882
                     /locus_tag="VFI64_02495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242189.1"
                     /translation="MNTQTKTAMLAILCIGMLTALSLSTLTLAVNPAFAKKKHCDKTD
                     NGCDGIKSKKNQDESKKTSADETQRSITRSQAKIDNSTLPIDLESENPFALVGITAIN
                     STTE"
BASE COUNT          798 a          487 c          413 g          865 t
ORIGIN      
        1 gccagtgatt taccagtata tacaaatcgg cgtcattaga tctaactttg agatgagtaa
       61 gaagaatatc cctggttggg tacctgaaat caatagaata cgccttagta tctataagtt
      121 caaaaatgtc ccttgaataa accaagcata cgtcaattcc tctcaaatca ggactatctt
      181 tataatcagc tatcaaatat ttgtcccgac ctattctatt tatcaattct tgaagaatag
      241 ctctatcttc cacttcagat aatcctagca aatctggctc tttgtcttct ataccatcaa
      301 ttccaaagtc catggatcgg attactttcg atagattgtc tagttttgta ttcttcacat
      361 tatctgtcca accattttct ggagtaaatt caaagtctgt tgcgatataa tttttgtaag
      421 tgccaaagag attctgcaag ttccagaaag ctatttttat taatctagtt tcgctcatta
      481 gtattttatc ttcattgcaa atattaaatt cttttttttt tgacttacca tgagcataga
      541 gctatgtcta ttaggttcat tatcttttat ttagaatctt tgccgctatt gatctaatat
      601 ctgtttttga aagcttactt gtgtcaatag ttatgtgtgc ttctttcaca ggttcataaa
      661 ttctcttcat ctttttataa actgagaaat ccgcatccga ataatcatgt ttcctatgtc
      721 gcagccgtaa aatgactata tcttcaggac aaatgcattc tattatctga aagtccttgc
      781 cagcaagacc aatcttctct ttgatttcgt gtcttgagag ttctcttgta aatgtagcgt
      841 ccaaaataca atttatgcct accttatcta gatatttagc aattagtacc ataacatcat
      901 aaatcaatct tctttccctc catccgtaca ttggtctgga gaacagctct ttccttattt
      961 tatccgtaga tagaataaca gcgtttacca acggtgcaag ttcttttgct actgtagttt
     1021 taccaacgcc gggtaatcca caaataatta ttatcattat ggatattaat atctctttca
     1081 ataaaaggaa tatcttttat aataataggt gtttaatttc ctccaaatta ttaattacga
     1141 atatttggtt acgagcaggt ctacactttt atctattcat ttttcctcgt atatgagttt
     1201 taaccccagt accaaaagta caattaaatc agctatacat tgattgtaaa attgaaggcg
     1261 aaaaaaatgt tctctcttat tgcacgacaa taaatatggc ccaggttaac tctggtaaag
     1321 ataagcatga cagtaatgag taatactatg taggaatatt gttctcatgc tcgtaattgg
     1381 tttaatcgaa gatttgagat tctatgcgaa tatactaatg ttgttatgcc ggaattgttc
     1441 taaaaaatag ggatagaaga acacaccatt gtttatactg ttttaatcag ttcaataagc
     1501 catattttct taccctcata tttttcaaag cccgtttata ctataatgtc aatgccaaat
     1561 tatgaatacc caaacaaaaa cagcaatgtt ggcgattctt tgcatcggaa tgctgactgc
     1621 cctatcttta tcgaccctaa cccttgcagt gaatcccgca tttgctaaga agaaacattg
     1681 tgacaagact gacaacggct gtgatgggat aaaatcaaag aaaaatcaag acgagtcgaa
     1741 gaaaacaagt gcggatgaga cacaacgaag tataactaga tctcaggcaa agatcgataa
     1801 ttctaccttg ccaattgatt tagagtccga gaatccgttc gcactggtag gaataacagc
     1861 gattaactcg actactgaat aacgaagacc gttcaacata aaaaatagtg tggacagtac
     1921 aatttgcaca tgtcctcccc agttattttt tctgagcacc ttcggggtta ctctgctact
     1981 aatttcaggc ggatctgtag atcgaaaaaa aagtctcctt gccgtgatca attatggaca
     2041 cgccgtacta tatagtttga ataagcgtac ttttcgtata atatttttct atctttctta
     2101 tgcaaaaaaa ctatctgaaa tgctctcagc ttgttagttt aaattcctct ggagtttaaa
     2161 cgaagagatt actctaccat ttatggtgca tcatttactg tctaaaattc aaggtggtgt
     2221 tactatatgc agagagttag tgactcatgc gggattttta gatttacctg acatatagcc
     2281 tgcataacag actgctgccc caatgattat cagaacagta cctatagccg gataataata
     2341 aatccggata gtcgtaagtg ttcctgagta agattcgtaa acgacagcaa gtccaaacgc
     2401 aattaggatt gctccgatta cgtaatttac aaccctaata atcgtgctcg tttaatgaaa
     2461 cgcacttgct ttatatttcc ttcgcaactg aaagtgttat cggttcacta tgcaaagttg
     2521 gtctctgtgt agatcataat ctttaagaaa tgaaccaagt tta
//
LOCUS       DASSIK010000137         9853 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1404177, whole genome shotgun sequence.
ACCESSION   DASSIK010000137 DASSIK010000000
VERSION     DASSIK010000137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 9853)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9853)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9853
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1404177"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1108)
                     /locus_tag="VFI64_02500"
     CDS             complement(<1..1108)
                     /locus_tag="VFI64_02500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HET7242190.1"
                     /translation="MTDNLYHDVVIIGSGLAGLRAAISCAETNKKLSIGVISKVQVMR
                     SHSVSAEGGTAAVLFEDEGDNKDSHIYDTIRGSDFLADQDVAELLVRQMPDEIYKLDD
                     WGMPWSRKTDGRIDQRHFGGYSFPRATYAQDKVGFYEMQTLYDTCLKFDNIHFYNEWF
                     CTSILDDGNNNFAGLTVIEMKSGDFLIVKALAGIICTGGAGRMYSFSTYAYSSTPDGL
                     DMAYRAGLALKDMEFVQFHPTGIIPSGILITEGARGEGGYLINNQGERFMKRYAPKNM
                     ELAPRDVVSRSMMMEMQEGRGFVHETGVECLKLDLTHISEDRIKERLAGIREIGIKFS
                     GVDIVNEPIEIRPVCHYMMGGIHTDIDGRTEMDGL"
     gene            complement(1394..2674)
                     /gene="hisS"
                     /locus_tag="VFI64_02505"
     CDS             complement(1394..2674)
                     /gene="hisS"
                     /locus_tag="VFI64_02505"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: protein motif:HMM:TIGR00442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004821 - histidine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006427 - histidyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HET7242191.1"
                     /translation="MKIELPRGMRDIEFEESKYIELMRQKFIDAAQRFDFNFMEPSPL
                     ELLSTLEAKSGPSISNETYSFTDKGGRMIGLRFDLTVGLSRFVSQRRELKMPTKFASF
                     GGVWRYDEPQFGRYRYFHQWDVEIFGSFSNEADSEIIEFVYKFLENLGLEVVVEINHR
                     QIVERFLREKLGISAISTIGEMLRAVDKLSKKKPQQIYEEYQGKLNLSKLRQLIEFSN
                     FKGEPEDCPDINILETFEGWKSTLEIFDSLKSRGVKNVQLNLGVVRGLDYYSGLVFEV
                     FDPSTAIGALVGGGRYDKLTEIFGRKDIGTTGAAGGVERILSAMRNHNLMKLKSKPLI
                     YVVYSSENVKNYAIRIVSDLRTSGYTTDYDFQGRRIDKQINEAISRRASAIIVVDQDE
                     IKNQIVTIRNSKGETSKHKITDLIKKMDEVLMLC"
     gene            2679..3173
                     /locus_tag="VFI64_02510"
     CDS             2679..3173
                     /locus_tag="VFI64_02510"
                     /inference="COORDINATES: protein motif:HMM:NF014058.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="archease"
                     /protein_id="HET7242192.1"
                     /translation="MRTYGSHLDFAINYIIIPSKLASVGGGFRYLEHVTDAYVEAYGH
                     SMAEAFDYSARGLVNLMFDIDNANEEIPIEIRVEGDDISHLLYNWLEKVLLIVLVEGL
                     VMSKFAVSISLKSTYKLEARSMADSVDLIKHNYKTEIKGITYHAMEIIQKDNLVKIRY
                     IADL"
     gene            3350..3691
                     /gene="trxA"
                     /locus_tag="VFI64_02515"
     CDS             3350..3691
                     /gene="trxA"
                     /locus_tag="VFI64_02515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HET7242193.1"
                     /translation="MSSHTSSNPPLIELSEKNFDEVVSSDKPVLVDFWATWCGPCQFM
                     LPIFDKLAKKYGDKVSFGRLNVDDNQGIAMRFDVYAIPTFIVFMNGKAVDKAVGAVGE
                     KGLEGLLEKYQ"
     gene            complement(3719..5503)
                     /gene="infB"
                     /locus_tag="VFI64_02520"
     CDS             complement(3719..5503)
                     /gene="infB"
                     /locus_tag="VFI64_02520"
                     /inference="COORDINATES: protein motif:HMM:TIGR00491.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HET7242194.1"
                     /translation="MNIRQPIVVVLGHVDSGKTSLLDQMRGTAVQSREVGGITQHIGA
                     SFFPIEIVKDITGPLYAQLAKSDSPIPGLLVIDTPGHEVFANLRMRGGSAADIAIVVA
                     DVNKGFEVQTVESIEILEKRKVPFVIALNKIDQIPGWNNTKSIFISEQIKAQGSDMIS
                     TLDEKIYTVVGSLSKLGYNSEAFWRIKDFTKEVAIVPVSAAKNIGIPELMAVLVGLAQ
                     QYMTKKLERHEGETKGIVLEVKDELGLGPSANIILIDGVLKQGDRVVVAKRDNAIVTK
                     VKALLLPKPLDEMRDPRDKFRPVDNVVAAAGLKITSPELDGVLAGSPLYVLKDSEDEG
                     RLRSLVESEIKAAIIRTDSNGIVLRCDTIGSLEATVDLLRKDKIPIQSADIGHITRRD
                     VLAASAVKEKDRYIGVILGFNVRVLDEAEREASERGIKIFNEKIIYNLVRSYTDWVSY
                     QKEHEDSILFNEISPVCKFQFLKGYVFRRNDPAVFGAEILIGRLRQKIPVINENGKKI
                     GSIHQIQEGGKNLSEASIGTQVAVSMKEPVIGRQISEGDIFYTDLTSKEAKLLLESFS
                     HRLGPEEQEVFQHILSKKREADPSFGYI"
     gene            complement(5504..5911)
                     /gene="ndk"
                     /locus_tag="VFI64_02525"
     CDS             complement(5504..5911)
                     /gene="ndk"
                     /locus_tag="VFI64_02525"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004550 - nucleoside diphosphate kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HET7242195.1"
                     /translation="MQSNEETLIVIKPDGFKRGLTGKIISRFEDKGFQIKKIKSFQFD
                     KMEAEEFYNIHRDKPFFNELVSFITSGIVVACVIEGINAVITTRLMIGSTKSSEADAG
                     TIRGDFGLGLTDNIIHASDSVESFIKESKVIFG"
     gene            complement(5931..6143)
                     /locus_tag="VFI64_02530"
     CDS             complement(5931..6143)
                     /locus_tag="VFI64_02530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24e"
                     /protein_id="HET7242196.1"
                     /translation="MSKLVRSLRSCFFCGRQILAGNGIMLVKNDGAIQWTCSNKCKKN
                     LRKLKRDPRKMKWTDKYVKGGIRVKK"
     gene            complement(6168..6383)
                     /locus_tag="VFI64_02535"
     CDS             complement(6168..6383)
                     /locus_tag="VFI64_02535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S28e"
                     /protein_id="HET7242197.1"
                     /translation="MSKAVEDKVTPAEVIQIVGRTGIAGEVIQVRVKVLEGKDKGRIL
                     TRNVKGSIRVSDILMLRETEREARKIK"
     gene            complement(6391..6774)
                     /gene="rpl7ae"
                     /locus_tag="VFI64_02540"
     CDS             complement(6391..6774)
                     /gene="rpl7ae"
                     /locus_tag="VFI64_02540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020266993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7Ae"
                     /protein_id="HET7242198.1"
                     /translation="MSKEYYVKFETPKDLVNEVYEAVRLARQSGKVRKGTNETTKAIE
                     RGVSKLVVIAEDVQPPEVVAHLPILCEERNAAYIFVPSKEQLGESLGIDVGSAAATIV
                     DAGDAQHIVDQVINSISNLKNKKEQ"
     gene            complement(6860..8239)
                     /gene="glmM"
                     /locus_tag="VFI64_02545"
     CDS             complement(6860..8239)
                     /gene="glmM"
                     /locus_tag="VFI64_02545"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008966 - phosphoglucosamine mutase
                     activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HET7242199.1"
                     /translation="MSQSTVNHSRLFGTNGVRGIFDDQLSFEVVIDLVHSLGSYYSDG
                     DIIVGCDGRKSSPILTRIVQATLNSDGHDVLDAGIIPTPCLQYFTKKGAFTGGIMITA
                     SHNPPEYNGIKPSADDGVEISRNDELEIERIYREKKFAKTLDYGVTRQQDLLKFYISD
                     VLNLVDVEKIRKHQFKIVMDFGNGVQALVAPILAKKLGCQVVAINGQIDGDFLARGSE
                     PTPENLHDLSFLVKELGANLGVAYDGDGDRSIFCDNEGVVHWGDRTGTLLVKHLLSLR
                     HRKAQVVCPINTTSVLAKIVGELGSDVIYTKVGSVEVSREMVKRKAIIGLEENGGFMY
                     GVLNEVRDGALTTALILDMLASEDNSLSGMFSTLPVVHQHKTKFRCSNQQLVEEVIQC
                     CMHHGNPVRVETLDGIKIWIDDETWIMIRPSGTEPLLRMYAESTDRDLIDSKVKEYTR
                     LINEILEKS"
     gene            8304..8451
                     /locus_tag="VFI64_02550"
     tRNA            join(8304..8336,8369..8375,8407..8451)
                     /locus_tag="VFI64_02550"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8372..8374,aa:Leu,seq:tag)
     gene            9068..>9853
                     /locus_tag="VFI64_02555"
     CDS             9068..>9853
                     /locus_tag="VFI64_02555"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HET7242200.1"
                     /translation="MKTIVEVTVIGKDRKGVVADITNFIFKNNGNIEQVNQNVVRELF
                     GMQLEASFNHVNKEDLSSGLRQLAHKLNMEVKVHFQEPDRSRNVAILVSKEPHCLTKL
                     LEAKSKTEIDANIAVIIGSEKTLEYMAKEFSVPFYHVDHTDHTMAELEILKIIELHNI
                     DLILLGRYMRILTPNFVWRYRNRIINIHPSLLPAFPGAYAYVQAYERGAKIVGCTAHF
                     VTEDLDQGPIICQKAFQVSPNDNVDTIRERGQSLEAITLLEAVK"
BASE COUNT         2816 a         2154 c         1725 g         3158 t
ORIGIN      
        1 atagcccgtc catttcagtt cttccatcga tgtccgtgtg aattcccccc atcatatagt
       61 gacaaactgg ccttatttct ataggttcat tgacaatatc aaccccagaa aacttaatac
      121 caatttctct aattcccgca agtcgttctt tgatacggtc ttcactaata tgggttaaat
      181 ccaattttag acattcaact cccgtttcat gcacaaagcc tcttccttct tgcatctcca
      241 tcatcatcga cctcgatacc acatcgcgtg gcgcaagttc catgttcttt ggagcatatc
      301 tcttcatgaa tctctcaccc tggttattta tcaaataacc tccctcgcct cttgcccctt
      361 cagtaatgag tatccctgat ggtatgatgc ctgttggatg aaattgtacg aattccatat
      421 ccttcaaagc aagacctgct ctatatgcca tatctaaacc gtctggcgtg gaggaatacg
      481 cgtaggtgga gaagctatac attcttcctg caccgcctgt gcaaattatt ccagctaggg
      541 ccttaacaat gaggaaatcc ccactcttca tttctatgac cgtcagacct gcgaaattgt
      601 tgttaccatc atcaagtata gaggtacaaa accactcatt ataaaaatga atattatcaa
      661 attttaaaca agtatcgtat aatgtctgca tttcgtagaa tcctacttta tcttgtgcat
      721 atgttgctct tgggaaagag tatccgccaa agtgacgctg atcaatccta ccatcagtct
      781 ttctcgacca tggcattccc caatcatcga gtttgtatat ttcatcgggc atttgacgta
      841 ccagtagttc ggcaacatct tgatctgcaa gaaagtcact tccacgaatg gtgtcgtata
      901 tatgagaatc tttgttatct ccttcatctt caaaaagaac cgcggccgtc ccaccctcag
      961 cggacacgga atgcgatctc atgacttgca ctttcgaaat aactcctatg cttaattttt
     1021 tattagtctc cgcacatgat atagcggcac gtaagcctgc aagccctgag cctattatta
     1081 cgacatcatg gtaaaggttg tcagtcatgc aacatcatag cctataatct aacaaattca
     1141 cggcttagca tgcccataaa taggtttgcg gtttacatat aaggaatatt gctcatcgat
     1201 cgggataatt tatggccact cactgtttag ttcaacgtac tacggataac actacagtaa
     1261 tattaattaa attgatttat tagtcaaacg tgctaacata ttgaaaatag tactattagc
     1321 gcattgataa gtcacatatt taatccatcc ttcgagtatt gatatttaag agattcatat
     1381 tcaattaacg aatttaacag agcatcaaaa cctcatccat tttttttatg aggtcagtta
     1441 ttttgtgttt gcttgtctct cccttactat ttctaattgt tactatttga ttcttgattt
     1501 cgtcttggtc cactacgatg attgctgatg cccttctgga aatagcttca ttaatctgtt
     1561 tgtcgatacg cctaccttga aaatcataat ccgtagtgta tccactggtc ctaagatcgg
     1621 aaactattcg aatggcgtaa ttttttacat tttcggatga gtaaaccaca taaatcagtg
     1681 gtttactttt gagcttcatc agattgtggt tcctcattgc cgacaatatc ctttcgacgc
     1741 cccctgcagc accagtcgtg ccaatatcct tccttccaaa tatttcggtt aatttgtcgt
     1801 atctacctcc tccaaccagt gcacctatag ctgttgatgg gtcaaatact tcaaagacca
     1861 accctgaata gtaatcgagt cctcgtacta caccaagatt gagttgaaca ttcttgactc
     1921 ctcttgactt taaggagtca aaaatttcga gtgtactttt ccatccttca aaggtctcca
     1981 aaatattaat gtcagggcaa tcttcgggtt cacctttaaa atttgagaat tctattagct
     2041 gtcgtaactt tgacaaattc agttttccct ggtactcttc atatatctgt tggggttttt
     2101 ttttagataa cttatcaact gctcgtaaca tttcaccaat ggtcgagatg gcagaaattc
     2161 ccagtttttc tctcaagaat ctttcaacaa tctgcctgtg gttgatttca acaactactt
     2221 cgaggccaag gttttcaaga aacttgtaca caaattcgat aatttcagag tctgcttcat
     2281 tgctaaatga accaaatatt tctacgtccc attgatgaaa gtatctgtat ctgccgaact
     2341 gaggttcatc atacctccat accccaccaa aggatgcgaa tttggtaggc atcttcagtt
     2401 ctcttctttg tgaaacaaat cgagagagac cgaccgttag atcgaatcta agtcctatca
     2461 tgcgtccgcc tttgtcagta aagctatagg tttcattgct aatcgagggc ccacttttag
     2521 cttcgagcgt agaaagcaac tctaatggag acggttccat aaagttgaaa tcaaatctct
     2581 gggcggcatc tataaatttc tgcctcatca gttcgatgta ttttgattct tcaaattcta
     2641 tgtctctcat tccacgaggg agctcaattt tcacaattgt gaggacatac ggttctcatt
     2701 tagattttgc gattaattat attatcattc ccagtaagct tgcttctgtg ggtggagggt
     2761 ttagatatct agaacacgtt accgatgcct acgtagaggc atatggtcat tcgatggccg
     2821 aggccttcga ttattcagcc agaggtcttg taaatttgat gttcgatata gataatgcca
     2881 acgaagagat tccaatcgag ataagggtag agggcgacga tataagtcac ctgctgtata
     2941 attggttaga gaaagtactt ttgatcgttc tagttgaggg acttgtaatg tcaaaatttg
     3001 cggtatcaat ctctctaaaa tcgacttaca agttggaggc acgttctatg gccgactctg
     3061 tggatttaat aaaacataat tacaaaacag agatcaaagg aataacatat cacgctatgg
     3121 aaataattca aaaagataat ttggtaaaga tacgctatat tgcagatttg taaatttatt
     3181 taccattcat cccacaaata gcagagaata gcctacattg tcattcgtta tgcgagaaag
     3241 tttattccaa atattccatg ggatatcata tgtttttgga agacctaggt taaatctaaa
     3301 gtgttttctt acaagattta aatatcaaat acaactcata ttgaatatta tgagttctca
     3361 tactagcagt aatcctccat tgatagagtt gtcagaaaaa aatttcgatg aagttgtcag
     3421 ttctgacaag ccggtattag tagatttctg ggctacatgg tgcggaccgt gtcaatttat
     3481 gttacctatt tttgataaat tggcgaaaaa atatggtgat aaagtttctt ttggtaggtt
     3541 gaatgtagat gataaccagg gaattgcgat gaggtttgat gtttatgcaa taccaacctt
     3601 catcgtattc atgaatggga aagccgtaga caaggcagtt ggcgcagtgg gtgaaaaagg
     3661 acttgagggt ttattggaaa agtatcaata ggattattct ataatcatta ttttccaatt
     3721 aaatgtaccc gaacgacgga tcggcttcgc gttttttgga tagaatgtgt tggaaaactt
     3781 cttgttcctc gggaccaaga cgatgggaaa aggattcaag taataattta gcctctttgc
     3841 ttgtcaggtc agtataaaag atatccccct cactgatctg tcttccaatg acaggttctt
     3901 tcatggaaac tgccacctgg gtacctatag aagcttcaga tagatttttt ccaccttctt
     3961 gaatttgatg tatcgaccca attttcttcc cattttcgtt gattacggga atcttttgtc
     4021 taagccttcc tatcagaatt tctgctccaa atactgcagg atcatttctt ctgaaaacat
     4081 atcccttcaa gaattggaac ttacaaacag gggatatttc gttgaacaat atcgaatctt
     4141 cgtgttcttt ctgataacta acccaatcgg tatagctgcg tacaagatta taaatgatct
     4201 tttcgttaaa gatttttatc cctctttctg aggcttctct ttctgcctca tctaatactc
     4261 taacgttgaa cccaagaatc accccaatat atctatcttt ttccttaact gcagacgccg
     4321 ctaagacatc ccttcgcgta atgtgcccta tatcagcaga ttggatggga attttgtcct
     4381 ttcttagtag gtccaccgta gcttctaagg aaccaattgt atcacaccta aggactatcc
     4441 cattcgaatc agttcttatt attgctgctt taatctcaga ttcgactaat gatctgagtc
     4501 gcccctcgtc ttcactgtcc ttcagaacgt acaacggact tcctgctagg acgccatcta
     4561 gctccggtga ggtaattttt agtccagctg cggctacgac attgtcaact ggtctaaact
     4621 tatcacgggg atcacgcatc tcatccagtg gtttaggtaa aagaagagcc ttgacttttg
     4681 taacaattgc attgtcacgt ttagctacaa ccacccggtc gccctgtttt agcaccccgt
     4741 cgataagaat gatatttgcg gaaggcccta aacccaattc gtctttcact tctaacacta
     4801 tgcccttcgt ctcaccttca tgacgctcta atttctttgt catgtattgc tgcgcaagtc
     4861 ctactagaac agccattaat tcaggaatgc caatattttt tgcagcgcta accggcacta
     4921 tggcgacctc cttggtaaaa tcctttatac gccagaatgc ttccgaatta taacccaatt
     4981 tcgataagga accaacgacg gtgtaaattt tttcatccag ggtggatatc atatcacttc
     5041 cttgtgcctt tatctgttca ctaataaaga tagatttagt attattccaa ccagggattt
     5101 gatcaatctt gtttagtgca ataacaaacg gaacctttcg tttttctaag atctctatac
     5161 tctcaacagt ctgtacttca aatcctttgt ttacatcggc aacaacgatt gcaatgtctg
     5221 ctgcagagcc accacgcatt cgaagattgg caaagacctc atgaccggga gtatcaatca
     5281 ccaacagacc tgggatgggc gaatctgact tcgcaagctg agcatagagc ggtccggtta
     5341 tgtcctttac tatttctata ggaaaaaaac tcgccccaat gtgttgtgtt attcctccaa
     5401 cttcccttga ctgtacagcg gttccccgca tctgatcaag aagagaagtt tttcccgagt
     5461 ctacatgacc caacactaca actattggct gcctaatgtt cacttaacca aaaatgactt
     5521 ttgactcttt tatgaagctt tcaacggaat cagaagcgtg tattatattg tccgttaatc
     5581 caaggccaaa atctccccgt atagtaccag catcggcctc agaagattta gtgcttccaa
     5641 tcattagtct tgttgtgatg actgcattga ttccctcaat tacacatgct acaactatcc
     5701 ccgaagttat gaatgagact aactcattaa agaatggctt gtctctatgt atattataga
     5761 attcttcagc ttccatttta tcaaattgga acgattttat tttctttatt tgaaatcctt
     5821 tatcttcaaa cctggaaata atttttccag tcagtcctcg cttgaagcca tcaggtttta
     5881 taacaatgag agtttcttca tttgattgca atttattcct attttccaat tcatttcttg
     5941 actctaattc cgccctttac gtatttgtcg gtccatttca tctttcttgg atctcgtttc
     6001 aatttacgaa gattcttttt acatttattt gaacaggtcc actgtatcgc cccatcattt
     6061 ttaaccaaca ttatcccatt accagcaagt atttgcctgc cacagaagaa acaactacga
     6121 agcgatcgga ccagtttact caaaagtcta actcacacca ataataatta tttgattttt
     6181 cgtgcctctc tttctgtctc tctcagcatt agaatatcac taactctaat cgatcccttt
     6241 acatttctag ttaatatacg gcccttgtcc ttcccttcta aaaccttaac acgaacctga
     6301 attacctcac ccgcaatgcc tgttcgaccc acgatttgga ttacctcagc aggtgtgact
     6361 ttatcttcca cagccttact catagattat ttattgctcc ttcttgttct tcaaattaga
     6421 aatagaattt atgacctgat caacaatgtg ttgagcatcc cctgcatcca caatagtagc
     6481 tgctgctgaa ccaacatcta ttcctaatga ctcccccaat tgctctttac ttggtacgaa
     6541 aatatatgca gcgtttctct cttcacaaag aatgggaaga tgcgctacta cttcgggagg
     6601 ttgtacgtct tccgcaatga ccaccaactt actgactcct ctttctattg cctttgttgt
     6661 ctcattagta ccctttcgaa ctttgccgct ttgtcttgca agtcttacgg cctcgtatac
     6721 ttcattaact aagtctttag gcgtttcgaa tttgacatag tattccttac tcaatctgat
     6781 ttatcaccca tcgggatcat cttatcgaat atgatgtaga aaataggagt attaaaaacg
     6841 ttgtcaatat attattgggt taactctttt ccaatatttc gttgataagt ctggtatact
     6901 ccttaacttt ggaatctatg agatctctgt cagtcgattc tgcgtacatt ctaagaagtg
     6961 gttcggttcc gctgggtctt atcataatcc aggtctcatc gtcaatccag atctttattc
     7021 catctaaagt ctcaactcta acaggattcc catgatgcat acaacattga atgacttcct
     7081 caactaattg ttggttagaa caacgaaatt ttgttttatg ctggtgaacc acgggtagag
     7141 tagaaaacat tcctgatagc gaattatctt cagaagccaa catgtccaaa atcagtgccg
     7201 ttgtgagtgc tccatctctt acttcattta gtactccgta cataaaacct ccattttctt
     7261 ccaatccaat tatagccttc ctcttcacca tttcccttga cacttccaca cttccaactt
     7321 tggtatatat cacgtcagat ccaagttctc ctactatctt ggcaagaaca gatgtagtgt
     7381 taatcggaca taccacctga gcttttctat gccttaatga aaggagatgt ttgaccaata
     7441 gtgttcctgt tctatctccc caatgcacca cgccttcatt gtcacaaaat atgcttctgt
     7501 caccatcccc gtcataagcg acacccagat tggcccccaa ttcttttacc aagaaactca
     7561 gatcatggag attttcaggg gtaggttcag aaccccttgc cagaaaatca ccgtctatct
     7621 gtccatttat agcgacaact tgacatccca gtttcttggc taatatcggt gcaactaatg
     7681 cctggacgcc atttccgaag tccattacta tcttaaattg atgtttccta attttttcaa
     7741 catctactaa attcaggaca tcactaatgt agaacttcaa caaatcctgc tgacgggtaa
     7801 cgccataatc caaagtcttt gcaaatttct tctcgcgata tatacgttct atctccagtt
     7861 catcattcct ggaaatttct acaccatcgt ctgctgacgg ttttatgccg ttatattctg
     7921 gagggttgtg agatgcagtt atcataatgc cacctgtgaa agcacctttc tttgtaaagt
     7981 actgtaagca aggggtaggt ataataccgg catcaagcac gtcatgccca tctgagttta
     8041 gggtggcttg aacaatccga gttagaatag gactggattt tcttccatca cacccaacaa
     8101 ttatatctcc atcactataa taggacccca gtgaatggac cagatctatc acgacttcaa
     8161 aactcaactg gtcatcaaag attcccctaa ccccattagt cccgaataac cttgaatgat
     8221 ttaccgtgga ttgactcatt ttaggtatta attgagaata gataaatttg gctgtttgtt
     8281 tttaatggaa aggaaaaaca agagcggggg ttgccaagcc tggtcaacgg cgcaggtctc
     8341 gttttattta ccaataggcg agtgcgaggc ttagaatgag cttgagctat ttagcaagtt
     8401 catacatccc tgttcctaag ggattcgtgg gttcaaatcc caccccccgc atcatttcta
     8461 aatagttcta aaaatatcaa tatctgtcat cacctaccac ttttgaagtg acctcataaa
     8521 atatgatagc tacaagaatt gctggcaata tgacaagaga aaaagatcaa gatactaatg
     8581 tttagaatcg tagcatgcgt atactgttgc gaagtgatca tccgacctat acattagacc
     8641 tctcggctag agtacaatct gcatgcgctt aaatctgctt gatgaatgct ataatctgca
     8701 catttttctg tgactgtcat catgaaagtg tttctcacaa aaatcggtat tgcattcata
     8761 gcaatgccaa cttgacaatg tataacagac tacacactta cgcgtgggat tgttgtaatc
     8821 aaaatccttc cttagtcggg tagttctata ttgtttctgt tctgttctca tctagtgtca
     8881 tctagcttgc gattaagata agaaaaatct atatcccaat aatcaataca ctttctggtg
     8941 taagcaggac cattacaatc tcggatcata cttaacttat ataagtcttg accagcccta
     9001 attaaatcag aatgatttaa tttattcttt tcatgactat tgacagactc gagctatgaa
     9061 gtcggacgtg aaaacaattg ttgaagtaac agtcatagga aaggacagaa aaggtgtcgt
     9121 agctgatatt actaatttca tattcaaaaa taatggtaac atagaacaag ttaatcaaaa
     9181 tgttgtaagg gaattgtttg gaatgcaact tgaagcttca ttcaatcatg taaataaaga
     9241 agatctttct tctggactca gacaattggc gcacaaactg aatatggaag taaaggttca
     9301 ttttcaagag ccggatcgct ctagaaacgt agcaatactg gtaagtaaag aacctcattg
     9361 tttaactaaa ttactggagg caaaaagtaa aacagagata gatgcaaata ttgccgtaat
     9421 aattggcagc gagaaaactt tggagtatat ggctaaagaa tttagtgtgc ctttctatca
     9481 tgtcgatcac actgaccata cgatggccga attagaaatc ttaaaaataa ttgaattaca
     9541 taatatagat ttgatcttgc ttggtaggta tatgagaatt ctgacgccaa actttgtgtg
     9601 gagatatcga aacaggataa tcaatattca cccctctctc ttgccagcat ttcccggtgc
     9661 ctatgcgtat gtccaagcat acgaacgggg tgcaaaaata gttggttgca ccgcacattt
     9721 tgtgacagaa gatttagacc agggaccaat tatttgtcag aaggcatttc aggtatcccc
     9781 aaatgataat gttgacacaa ttcgtgagag aggacaaagt ttggaagcaa taacattact
     9841 cgaagcggta aag
//
LOCUS       DASSIK010000138         3076 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1404815, whole genome shotgun sequence.
ACCESSION   DASSIK010000138 DASSIK010000000
VERSION     DASSIK010000138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3076)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3076)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3076
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1404815"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..844
                     /locus_tag="VFI64_02560"
     CDS             <1..844
                     /locus_tag="VFI64_02560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0097367 - carbohydrate derivative binding
                     [Evidence IEA];
                     GO_process: GO:1901135 - carbohydrate derivative metabolic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HET7242201.1"
                     /translation="YSKLRVEAIMSSEFQYSSELLDKNSVLIAISQSGETADVLQSIK
                     KAKEKGATVLSIVNVSTSSLARLSDCSLEVKCGPEVGVAATKSFTSQIALLYYVADTI
                     GSNFTGIATDMAELSTAVEETLRLETRIAELAKEVKNAKDIYILGRSIHLPICLEGAL
                     KIKELAYIHAEGMAAGEMKHGPLALIDKNSVVVVLNPNDSTYTDTVSNASVLKSRGAK
                     VISITSKCDPTYDYCIAIPAIRESLLPFVEIIPLQLLAYFLALYNNIDPDYPRNLAKS
                     VTVK"
     gene            885..1196
                     /locus_tag="VFI64_02565"
     CDS             885..1196
                     /locus_tag="VFI64_02565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242202.1"
                     /translation="MKNITCSLSSSRKGFVITSGTKLGKGNNWGEQLVKQKSETNELK
                     TGLSVLSYRITQNVKELTIKTHSLVCCIEHLQQSALYYALYADWEDRLTNRRKVDELL
                     I"
     gene            1145..2452
                     /locus_tag="VFI64_02570"
     CDS             1145..2452
                     /locus_tag="VFI64_02570"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HET7242203.1"
                     /translation="MGRPVNKSPEGGRTFNLMFFDIQVFVSGFLPWLHSISFLEIIGM
                     MAVMSIDVVKNVGKPILLGVHQLKSYHVPIHFRYNEGSGSPKVSIIIPTHNESLTVRK
                     IINSCLENPYPNKEIIVVDDHSTDDTFKQAYPYHKRGEIKLLQRMGSKGSRASAINFG
                     ITFATGEIMVIVDADSILERNSITEVVKYMSLPNVVAGAGDVRVISGDNDVTNLLTKC
                     QSYEYLIAFELGRRLRLMLNILVVIPGTFSVITKELGKKIGLYDIDTITEDFDLTLKI
                     FKTGGKVTFIPTAVCWTYCPYTWKGWLRQRIRWSHGQIATLVKHRNIVTSRTTYKPLL
                     ILGVFDMIFMDVILLFARIFSMVWLAINFSQNIIYIVILITLVYFVSEIIVIVTAALF
                     SPRKSDLRYVYLMPFIVLIYRPLYGLIRMYSYVQWLFRKEVPW"
     gene            2777..2849
                     /locus_tag="VFI64_02575"
     tRNA            2777..2849
                     /locus_tag="VFI64_02575"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2810..2812,aa:Ala,seq:cgc)
BASE COUNT          963 a          551 c          639 g          923 t
ORIGIN      
        1 atactccaag cttcgcgtag aagcaattat gtccagtgaa ttccagtatt cttctgaatt
       61 actggataaa aattcagttc ttattgctat ctctcaaagt ggtgaaactg cagatgtcct
      121 acagtctatc aaaaaggcaa aagagaaagg agctacagtg ctttcaattg ttaatgtctc
      181 aacttcctca cttgctagac tcagcgattg ctcacttgag gtaaaatgcg gaccagaggt
      241 tggagtagca gcaaccaaga gctttaccag ccaaatagcc cttttgtatt atgtagctga
      301 tactattggc agtaacttca cagggattgc aacagatatg gcagaacttt cgacggcagt
      361 cgaagaaact ctgcgattgg aaacgagaat tgcagagtta gcaaaagagg tgaagaatgc
      421 gaaagatatc tacatcctgg gccggtcaat acacctacca atatgtctcg aaggtgcatt
      481 aaagatcaaa gaacttgcat atattcacgc ggaaggaatg gcagcaggag agatgaaaca
      541 cgggcctctt gccttaatcg acaaaaacag tgttgtggtg gttctgaatc ctaatgactc
      601 aacatacacc gatacagttt ccaatgctag tgtattgaaa tcgaggggag ctaaagtaat
      661 cagcataact agcaagtgcg atcctacata tgattactgt atcgccatac ctgctattag
      721 agaatcgtta ttgccttttg ttgagattat ccctttgcaa ctcttggcat actttctagc
      781 gctctacaat aatatagatc cagattatcc acgcaacctt gctaaatccg tgactgtaaa
      841 ataaaattaa gcatacggtg atgttgtgaa atattctgta gtcaatgaaa aacattactt
      901 gctctctatc ctcttcgagg aaaggatttg ttatcacttc aggtacgaaa ttaggtaaag
      961 gcaataattg gggtgaacaa ttggtcaaac aaaaatcaga aactaatgaa ctaaaaacag
     1021 gattatcagt cttatcatat agaattacac aaaatgtaaa ggaattaact ataaagaccc
     1081 atagtttagt ctgttgtata gaacatctgc agcagtcagc actgtactat gctctgtatg
     1141 ctgattggga agaccggtta acaaatcgcc ggaaggtgga cgaactttta atttgatgtt
     1201 ctttgatatc caagttttcg tttcagggtt cttgccctgg ctgcattcta tttcgttttt
     1261 agaaattata ggtatgatgg ccgtgatgtc gatagatgtg gtaaaaaatg taggcaaacc
     1321 gatattactg ggagtacatc agcttaagtc ctatcatgta ccgattcatt tcagatacaa
     1381 cgagggatcg ggatccccca aagtcagcat aataattcca acgcataatg aatcgttaac
     1441 tgtaaggaaa attatcaatt catgtttgga aaatccatat cccaataagg aaattattgt
     1501 tgtcgacgac cattcgactg atgatacatt caaacaagca tatccttatc ataaacgtgg
     1561 agagataaag ctcttacaac gaatgggaag caaggggtca agagcttcgg caataaactt
     1621 tggcataaca tttgctaccg gggagattat ggtgattgtt gacgccgatt caatacttga
     1681 gaggaattca attactgagg ttgtaaagta catgtccttg cctaacgtag ttgctggtgc
     1741 tggagatgtt agggtcataa gcggcgataa tgatgttact aatttgctaa ccaagtgtca
     1801 gtcctacgag tatctaattg cgtttgaatt agggagaagg ttgaggctca tgttaaacat
     1861 cttggtagtc ataccaggta cgtttagcgt tatcactaaa gaactgggga aaaagatagg
     1921 cctctacgac atagatacta ttacagagga tttcgacttg acgcttaaaa ttttcaaaac
     1981 tggtggaaag gtcactttca tccctacagc tgtttgttgg acttactgtc cttacacttg
     2041 gaaaggttgg ctaaggcaaa gaatacgatg gtcacatggc caaatagcga cgttagtaaa
     2101 acatcgcaat atcgtgacat ccagaacgac ctataagcca ttacttatcc tgggggtttt
     2161 tgacatgatt tttatggatg ttatccttct ttttgcgaga attttctcaa tggtctggtt
     2221 agcaattaat ttttctcaaa atataatcta catcgttatc ttaataacac tagtttattt
     2281 tgtaagtgaa ataatcgtaa ttgttacagc tgcgcttttt tccccacgta aaagtgatct
     2341 tagatatgtt tacctgatgc catttattgt tcttatttat agaccattat atgggttgat
     2401 caggatgtat tcgtatgtcc aatggttatt taggaaggaa gtaccgtggt gatgtggaaa
     2461 attaggatca attctataaa gcatctcaaa aatggtttgc agtccaatct aacttaaaat
     2521 cggtattctt attttattat ttactagata gggatggagg gccacttcaa ttatagacca
     2581 aagctagcga ttgttctcaa ggtatgtcgc aatgtatatg ataatgcaga atctaccggg
     2641 tttattgctt ttattagaca atatttttgt cagataatac tcactcagaa gccacagcaa
     2701 ggccgatcga ttatgatttg cagtttttct acgcctcaaa ttttatatca gggctttgac
     2761 tgctacacgc attgaagggc tggtagttca ggggtagtaa tgttcggttc gcaaccgaaa
     2821 ggtcgcgggt tcaaatcccg cccagtccat taataacacg ggttcatata catgagatta
     2881 gttaattatg agcacgaaat gacggagcat agctaagttg ccaatcaggt tatcgactac
     2941 cttgaataag attcaatcag ctaccaatac cgttaatgga tcactgttat tggagcttta
     3001 tgagtatatg aagacgaatg gctcatctga gagtcatatg aataatactt taaagacaaa
     3061 tagtctattt gcacaa
//
LOCUS       DASSIK010000139         6586 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_913903, whole genome shotgun sequence.
ACCESSION   DASSIK010000139 DASSIK010000000
VERSION     DASSIK010000139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6586)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6586)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6586
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_913903"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(158..1027)
                     /locus_tag="VFI64_02580"
     CDS             complement(158..1027)
                     /locus_tag="VFI64_02580"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HET7242204.1"
                     /translation="MLLQGFENSIQTGDCKNILEKLPANSIQLTITSPPYRNAIDYGM
                     HVEGNGYYRGTTRISTTEYLNDMIEIFNNHVFRVTREGGYCCIVIGNEVVNGSILPLP
                     HMLLSNLVQPFGNWSLHEEIIWHKVTGGTNRYGSFVINPYPKYFRANIMHEFILVLRK
                     GNVNSGRTQRDDALPAKHEEFTKEIANSVWHIAPVPPGFINHPCPFPEEIPYRLMKLY
                     SYEGDVILDPFNGSGQTTKVAHHFLRGYIGIDIINEYAKLAKGRLHDEPLHIRTEALI
                     AKWQKIPSHYTRR"
     gene            complement(1128..2147)
                     /locus_tag="VFI64_02585"
     CDS             complement(1128..2147)
                     /locus_tag="VFI64_02585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003856 - 3-dehydroquinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase II"
                     /protein_id="HET7242205.1"
                     /translation="MNGASLDDFISNLAGVSLIYADPDFVKDKRFKTIFPSENANLVV
                     CDSIESLRKIKRKNKSVGYYKKVVTNEDLDEISEASKEGAQFVIVDATDWKIIPLENL
                     IAKLQTSGTKIFANAKNSDEVRTMFSVLELGVDGVILTTDDLKEVENSKSNLENVLFS
                     LGNARVVEVKDVGVGERVCVDTASIMVYGEGMLVGNKSNFLFLIHNESIGSSFTSPRP
                     FRVNAGAVHCYTILPNGTTKYLSELESGVEVLIVNNEGVGRRSTVGRSKIETRPLRLI
                     RAESDGEFGSVIVQNAETIRLVSKDKKLIPVTEIKIGDEIVTYAKPTSGRHFGMQVNE
                     FILEK"
     gene            complement(2170..2967)
                     /locus_tag="VFI64_02590"
     CDS             complement(2170..2967)
                     /locus_tag="VFI64_02590"
                     /EC_number="2.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate
                     synthase"
                     /protein_id="HET7242206.1"
                     /translation="MSIGREIRLSRILKKSKMLCIPMDHGITNGPISGIENIHDTIYR
                     CENTGLTCIIVNKGIIKSLPHPPTVGVIAHMSGSTSLGPDPNKKMLMGSVEESIRLGA
                     DAVSVHINIGAREEPEMLQALGMVSDKCNEWNVPLIAMMYPRGENIKNPHDQNIVAHV
                     ARIGAEAGADIVKTVYTGDISSFKQVIRGCPVPIAIAGGPKATTDAEILDMCAGAMEA
                     GAIGVTFGRNIFQHRNPPAILKALSKVIFEGKKPKGLLKELDKSTTN"
     gene            complement(3131..3478)
                     /locus_tag="VFI64_02595"
     CDS             complement(3131..3478)
                     /locus_tag="VFI64_02595"
                     /inference="COORDINATES: protein motif:HMM:NF012753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030234 - enzyme regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006808 - regulation of nitrogen
                     utilization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HET7242207.1"
                     /translation="MKRIEAIIASEKISELNAALKQIGVGGCTILDAKGRGKGEKPMV
                     EAQRGTARFAAEFSVRANVVTVVEDSQLEKVIKTILDTISTGSAGDGKIFVSTVIDAI
                     DIGTKARGEEAIG"
     gene            complement(3706..5163)
                     /locus_tag="VFI64_02600"
     CDS             complement(3706..5163)
                     /locus_tag="VFI64_02600"
                     /inference="COORDINATES: protein motif:HMM:NF014044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF87 domain-containing protein"
                     /protein_id="HET7242208.1"
                     /translation="MKILSKNGNELTLIAMKNEVVHKGDYLIVDDRKFSRKMIVQIYD
                     EDYLSSQNLLEDIVRDEVILACSEENLHDPLNISSLSKLIRDARLIRTKIRSTIDING
                     RITSDISWIPSRVFSSVKKLSVPELSDLLNRVGVLSINIGQTGKKGENFKIYAEDLDG
                     KLNIITGKKESGKSHLSKLLIKSLVEHGAYVIVFDLNNEYGGLGCTCSGKPSSINDRT
                     LILEPGGLLRFRLDYCGKFTISNILKNSLDMPSASLREFGRIWDKLQGTGKLDVESLG
                     EMINRVSMNELVRDALVSRHHLLHNSGLFSLETGNSGLEFEKVTETKPNGAALIISLH
                     KVSAVIRKMIVELVLSKLVELLDKQLIPPIFLFAEEAHLYVKETYWDDIITRMRHFGI
                     FTTFITNQPDALGDSIYRQVDNIFLFNFVNESDLEKISRVSLIDNDTIKSVVRTLPQR
                     HCLVVGKVVRDLPIVAIIPPIDIVTLGATKKFFKP"
     gene            complement(5166..6125)
                     /locus_tag="VFI64_02605"
     CDS             complement(5166..6125)
                     /locus_tag="VFI64_02605"
                     /inference="COORDINATES: protein motif:HMM:NF020933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA double-strand break repair nuclease NurA"
                     /protein_id="HET7242209.1"
                     /translation="MSPLDSFLSVGGALRGKNVVFTSDDKSLVPLGRWKNDIHAFSEV
                     PINPIPASKEPSIVCGTDSSCIKIAETEDGTLYAVKCGVVFCLSMQVVLHFRIGPLLF
                     YITESTLSGSDLDSRLVKVVSFDSDIAKRMIRINVERLIQFELSKLLRGSVILVDGAL
                     KASIFENRHYNVKKILENCALHKNSLLGIGKSTKFKILDMVSGNLRTTNYPAVLDVSF
                     IIKSLVKNTFGYNTMVKFAKNSTVLRADVAAKDNEEVISSLGKIRGNDLLPSGYPECL
                     SMAHHISCFSNTEIFGIRGHILNNYEVVELPSHDVRRHLLGSI"
     gene            6297..>6586
                     /locus_tag="VFI64_02610"
     CDS             6297..>6586
                     /locus_tag="VFI64_02610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242210.1"
                     /translation="MSDPSIATESDSDEVKVRLKHNDWEVEITCKENKLKSVIENVLS
                     GVDSTKIETPGIANELVELKRQIEELKSRLTSVESLPSTVGVNYGERRQSQRL"
BASE COUNT         1912 a         1398 c         1116 g         2160 t
ORIGIN      
        1 tgatttttga gaacaaaata atacggttcg gaacagaatt ttttctgtct attcctattg
       61 atttagctag ttcattaaca attagagatg gggatgaatt cgaaatgtta gtgaatgatg
      121 aaatgaattt gattttaaga aagaaatcgg actaagccta tcttcttgtg taatgggagg
      181 gtattttttg ccattttgca atcaatgctt ctgttctaat gtgtaatggt tcgtcatgta
      241 atcttccttt cgccaattta gcatactcgt taattatgtc aatcccgata taccctctta
      301 aaaaatggtg ggcaacttta gttgtttggc cactaccgtt aaatggatca agaattacgt
      361 caccttcgta ggaatacagc ttcatcaaac gataggggat ttcctcagga aaggggcacg
      421 gatgatttat aaatccaggt ggaacaggcg caatatgcca gactgaattt gctatttcct
      481 ttgtgaattc ctcatgtttg gcgggtagtg catcatcgcg ctgagtcctc ccactattta
      541 cgtttccttt tctaagaaca agaataaatt catgcatgat atttgcccta aaatattttg
      601 gatatggatt tattacaaat gaaccatatc tgttagttcc tccagttact ttatgccata
      661 ttatttcttc atgaaggctc cagttcccaa acggttgaac cagattagat aaaagcatat
      721 gcggtaatgg aaggatactg ccattaacaa cctcatttcc tatgactatg caacagtaac
      781 caccttctcg ggtaactcta aaaacatgat tgttaaatat ttcaatcatg tcattgaggt
      841 attcagtagt tgaaattcgc gtagtcccac gatagtatcc attcccttct acgtgcatac
      901 cgtaatctat tgcgttccta taaggagggg aagttatagt aagttgaatt gagtttgcag
      961 gtaatttttc aagaatattc ttgcaatctc ctgtctgtat tgaattttca aacccttgaa
     1021 gtaacattag agtccatatt tgtcacgtat gcgtcaatat tcgccatact caaaaataat
     1081 aaaccggatt atgaacaaaa ttagttgaat atggggagag cagacgatta tttttctaag
     1141 atgaactcat tgacctgcat tccgaaatgt cttcctgaag taggttttgc ataggtcact
     1201 atttcatcac ctatttttat ctccgtaaca ggtatcaatt tcttatcttt agataccaac
     1261 ctgatagtct ccgcattctg gacgatgaca ctaccaaatt cgccatctga ttctgctcga
     1321 atcaacctta aaggccttgt ctctatcttt gaacgtccta ctgtggacct tcttcccaca
     1381 ccctcattat taacaatcag tacttctact cctgattcca attcagaaag atatttcgtt
     1441 gttccgtttg gcaaaatcgt ataacaatga actgctccag catttactct gaatggtcgc
     1501 ggtgacgtaa atgatgatcc tatcgattca ttatgtatca aaaataaaaa atttgactta
     1561 ttaccaacaa gcattccttc gccatacacc ataattgaag ctgtgtcaac acatactctc
     1621 tcgccgacgc ctacatcttt cacctcaact acccttgcat ttcccaagct aaacaaaaca
     1681 ttctctagat tggactttga attttcgact tccttcaagt catcggtagt cagtattact
     1741 ccatcaacac caagttctag tacagagaac attgttctaa cttcgtcaga attctttgca
     1801 ttagcaaata tctttgttcc actcgtctga agtttagcaa ttaaattctc aaggggaatt
     1861 atcttccaat ctgtagcatc aacaatgaca aattgagctc cttcctttga ggcttccgaa
     1921 atctcgtcaa gatcttcatt agtgacaacc tttttgtagt agccaacaga tttgtttttc
     1981 cttttaattt tcctcaatga ttcaatcgaa tcgcatacta caagatttgc attttcagat
     2041 ggaaatattg tcttaaatct cttatctttc acaaaatcag ggtcagcata tatcaacgat
     2101 acccccgcaa gatttgagat gaaatcatct aaactagctc cattcattat aggtcgaacg
     2161 atcagttcct tagtttgtcg ttgatttgtc aagctctttt aacaatcctt ttggtttttt
     2221 tccctcaaag ataactttag atagtgcttt caatatagca ggaggatttc tatgttgaaa
     2281 aatatttctg ccgaaagtta cgccaatagc acctgcctcc atagcaccgg cacacatgtc
     2341 taagatttcg gcatctgttg tagcctttgg tcctcccgca attgctattg gtaccgggca
     2401 tcctctgatg acttgcttga aggaagaaat atctccggta tacacagtct tgacaatgtc
     2461 agctccagcc tcagctccaa tcctcgcaac atgtgcaaca atattttgat catgtgggtt
     2521 ctttatgttc tcaccccttg ggtacatcat agcaatcaat gggacattcc attcgttaca
     2581 tttgtccgaa accataccca atgcttgaag catttctggc tcctctctgg ctccaatatt
     2641 aatgtggaca gagacggcat ctgcacctag tcttatagac tcctccacac ttcccataag
     2701 cattttcttg tttggatccg gacctaatga cgtactaccg gacatatgag cgatcacccc
     2761 aacggtaggt ggatggggaa gacttttgat aattccctta ttgacaataa tgcatgtcag
     2821 acctgtattt tcgcaccggt agatagtatc atgaatattc tctatgccgg atataggacc
     2881 atttgtaata ccatgatcca ttggaataca gagcatctta ctttttttaa gaatacgact
     2941 caatctaatc tctcttccaa tactcatgaa tatccaagaa cttctccccc cgacttaaaa
     3001 gtgatatgat atcattgagg cctagagttt tttaattcta gaacactgaa ctacagttta
     3061 ccctgacttt acgataatat cacacaaata ttagattcgg tagctaataa gctgttattc
     3121 ttggagcaaa ctaacctatt gcctcttctc cacgtgcctt agtgccaatg tcaattgcat
     3181 caattaccgt tgatacaaag atttttccat cacctgctga acctgtgctt atagtgtcca
     3241 atatggtttt gatgaccttt tctaattggg aatcttcgac tacagttaca acatttgccc
     3301 tgacagaaaa ttccgcagcg aatcgagcgg tgcctctctg ggcttccacc atgggttttt
     3361 ctccttttcc tcttcctttg gcatctagta tcgtacatcc acccactcca atttgtttca
     3421 aagcagcgtt taattcagat atcttttcgc tagcgataat agcttctata cgtttcataa
     3481 tttgctataa aaaaaggtca caatataagg ttttcaaata aactttcata aataaaaaat
     3541 ataactattc ttgaatacta tttagtaatt atcatagaaa tcctattttt catagcttca
     3601 aataaatctg taccctaaga tggcttaaaa tgccatcccg agtcttcatt tcagaataaa
     3661 acattggcaa tagttgttct tggtaaaagc ccagaccttc cgcgattaag gtttaaagaa
     3721 tttttttgtt gctccgagtg tcactatgtc tatgggaggt attattgcga ctattggaag
     3781 atctcggacc acttttccca cgactaaaca atgtctctgt ggaagggttc taactaccga
     3841 ttttattgtg tcgttatcaa tcaaagagac cctcgatatc ttctcaagat cggactcatt
     3901 aacaaaatta aacaaaaaga tgttgtcgac ctggcgatat atgctatctc caagggcatc
     3961 aggttggttc gttataaaag tagtaaatat tccaaaatgc ctcattctag taatgatatc
     4021 gtcccagtaa gtttccttca cgtatagatg tgcttcttct gcgaacaaga atattggagg
     4081 tattaattgc ttgtctagca attctactag tttgctcagg acaagttcca caatcatttt
     4141 tcgaattaca gcactaactt tatgtaaact tataatcaac gctgctccat ttggcttggt
     4201 ctcggtaact ttttcaaatt caagaccact attacctgtt tctaacgaaa acagtcctga
     4261 gttatggagt aaatgatgtc ttgatacgag agcatcacgt actagttcat tcatgcttac
     4321 gcgattaatc atttcaccta gggattccac atcgagcttc cccgtacctt ggagcttgtc
     4381 ccaaattctc ccaaactccc tcaatgatgc tgacggcata tctagagaat tcttgagtat
     4441 atttgagatc gtaaacttgc cacaataatc caatctaaat cttagtagac ctcctggttc
     4501 tagaattaag gtacgatcat ttatggatga aggcttgcca ctgcaggtac atcctagtcc
     4561 tccatactcg ttgttgagat cgaatactat cacatatgcg ccatgttcta ctaaggattt
     4621 tatcaatagt tttgataaat gtgatttgcc tgattccttc tttcccgtta ttatgtttag
     4681 ttttccgtcc aaatcttcag catagatctt aaaattctca cctttttttc ctgtttgtcc
     4741 aatattaatt gagaggacac caacacgatt caacagatcg ctcaattctg gtacggacag
     4801 ttttttcaca gatgaaaaaa cacgagaggg gatccacgat atgtcgctag taattcttcc
     4861 gttgatatca atagttgacc taatttttgt tcggatcagg cgcgcatctc taattaattt
     4921 tgagagactg cttatattta gaggatcgtg tagattctcc tcactacagg ctaatattac
     4981 ttcatctctt actatatcct caagcagatt ttgggaagaa agatagtctt catcataaat
     5041 ctggactatc atcttccggc taaattttct atcgtccact atgagataat ctcctttatg
     5101 tactacttca tttttcattg caatgagtgt gagttcattc ccgttttttg agaggatctt
     5161 catatctaga tagagccaag caggtgtctt ctcacatcgt gtgacggtaa ttctactact
     5221 tcatagttat tcaaaatgtg ccctcgaatg ccgaatattt cggtattcga aaaacacgag
     5281 atatggtgag ccatacttag acattctgga taccccgatg gaagtaaatc attacctcgt
     5341 attttgccta aagagcttat cacctcctca ttatccttgg ctgcaacatc agccctcagt
     5401 actgtactgt ttttagcaaa ctttaccatg gtgttgtatc caaaggtatt ctttacgaga
     5461 cttttgatta tgaagcttac atcaagtact gctggatagt tagttgtcct tagattaccc
     5521 gataccatat cgagtatctt aaatttggta ctcttcccaa ttcccaacaa cgaatttttg
     5581 tgcagagcac aattttctaa tattttcttc acgttgtaat gtctattttc aaatatggaa
     5641 gcctttaacg ctccgtcgac tagtataacc gatcctcgta gcaactttga cagctcaaac
     5701 tggattaacc tttcaacatt aattctaatc attctctttg cgatatctga atcgaaggag
     5761 acaactttca ctaaccggga atcaagatcc gaaccagaaa gggtactctc tgttatataa
     5821 aatagtagtg gccctatcct gaaatgcagt acgacctgca tagaaagaca gaacaccaca
     5881 ccacacttta cagcataaag tgtaccgtct tcagtttccg cgatttttat gcagcttgaa
     5941 tctgtgccac atacaataga tggttctttc gaagctggaa ttggatttat tggtacctcg
     6001 ctaaatgcat gaatgtcatt cttccatctc cccaatggaa ctagtgattt atcatctgat
     6061 gtgaatacaa cgttttttcc tcttaatgca ccacctacac tcaaaaatga atcaagcggt
     6121 gacatttcta agatgctccc caatagtttg gaatccatat gttgttgaag atttaattgt
     6181 gcattcatgt tgaacaacaa tatacctaac tagttattta ttaatattgc gcatgatgca
     6241 caatatgaac accaacaagt ttatgttatt ctcacaatta cccaagagat actttaatga
     6301 gtgacccctc aatcgcgact gaatctgact ctgatgaagt caaagtcagg ctaaagcata
     6361 atgattggga ggtcgagatc acatgtaagg aaaataaact aaagagcgtg attgaaaacg
     6421 tgttgtcggg agttgattcg acgaagattg aaactcccgg tatcgcaaat gaattagttg
     6481 aattaaaacg tcaaattgaa gaattgaaat ctagactaac atcagttgaa tcgttgcctt
     6541 caacggtggg cgtaaattat ggcgaacggc gacaatctca aaggct
//
LOCUS       DASSIK010000140         3702 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1110802, whole genome shotgun sequence.
ACCESSION   DASSIK010000140 DASSIK010000000
VERSION     DASSIK010000140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3702)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3702)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3702
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1110802"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            543..983
                     /locus_tag="VFI64_02615"
     CDS             543..983
                     /locus_tag="VFI64_02615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242211.1"
                     /translation="MDSILSRIHPWPFAGWTTDMESDASQYNILNLADSFIEQMIKIR
                     NTLRIMSISALILAPFAIGLAIYLINHPSFFNVLQTQGEFGVILSVLLGSVIGISSIW
                     MIAGIRQYLLIDSWNKKYQLFVSRKNEIDNEIASEFISDNDFLE"
     gene            1048..1416
                     /locus_tag="VFI64_02620"
     CDS             1048..1416
                     /locus_tag="VFI64_02620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HET7242212.1"
                     /translation="MSYRDRVYIVSDIILKLIEYGKMNQTAVTTFCGLNISKHRSILD
                     KMEQNGLIERTEQALGKRSITIYQCTPKGVEFCKNILEPYEKMFPRTEKFRGSKATFA
                     RENLSLGLTEANFYEPSPVC"
     gene            complement(1531..1677)
                     /locus_tag="VFI64_02625"
     CDS             complement(1531..1677)
                     /locus_tag="VFI64_02625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242213.1"
                     /translation="MNMTIESGWHFVVGISIPLVIWFFSTHLKELKGKDYNIKKKPTQ
                     MVAG"
     gene            complement(2025..2960)
                     /locus_tag="VFI64_02630"
     CDS             complement(2025..2960)
                     /locus_tag="VFI64_02630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242214.1"
                     /translation="MKKIEISKRSAIIITGVGILSAILLFFLSAYIIKPLSLPLISTS
                     KKFDKFGIMEIYPTKPGGREWFINMENPTSDGIFNPQSNLSRQQDGSWRITGKLTSGK
                     FYDEVRMNVNTPTGAQNWKNVEITGYAKVDSIVVPFNGTANEDLTWYARGGKHNPHMP
                     CEGTAYMGGIYVDGHVGWKKEIWFTGGYTTERAHEKVTDSLIGRWVGWKAIIYNIQND
                     TAVKLESYLDSTGTNDWIKVADVVDNGGWHAKTSDSLFYSAKCDKPKDYIITSGGPIA
                     TFRSDDLVWEFKDLSVREIRPSIDVHNGHDSFRNE"
     gene            complement(3005..>3702)
                     /locus_tag="VFI64_02635"
     CDS             complement(3005..>3702)
                     /locus_tag="VFI64_02635"
                     /inference="COORDINATES: protein motif:HMM:NF042648.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="N,N-dimethylformamidase beta subunit family
                     domain-containing protein"
                     /protein_id="HET7242215.1"
                     /translation="TNEPSSSASGFAMLYLIGNLKWISPDSIVAILTDRDVDAGSIFQ
                     RNGSNAYDVVILGHQEYVTQKEYDNFKKFVGDGGTMIILDGNVFYAEVKYDRNTGNIT
                     LVKGHSWAFNGISSWRSINERWRNETAEWVGSNYISNIAKFANNPFNYLPHEEQYVTN
                     PNDIILLNYNATMPPSNLTDKGSVVIATYELNYLKGRVIALGLYSDDIMTNGSFDRYF
                     DNLVLQYAVRTKD"
BASE COUNT         1144 a          732 c          638 g         1188 t
ORIGIN      
        1 tgatctccgt tgtccctgtc gtctttgttg tggtcacctg aatcagcgta cgcaacactg
       61 ctcttcaaga taggaattgt cactaaaaga aaagctatcg cagcaattcc cacactaagc
      121 atcttcattg ttcttgttga catcacagac ttggcgcaac tatgtttata atctcttgct
      181 taactgtcca aattaactta gttagctttt tacaaaggca attacagttt aataggaaca
      241 ggcaagaaaa gttatgtaaa aactgaaatg ttcaagtgag cttttaactt agatgatcaa
      301 ctagccaaga agaaagatgt aaaatgaaaa tagtgataat attaagagtt agttctatac
      361 taaatttaac tgttttaatg cggagggtga ttggaatata ataatagtaa tcgcaaataa
      421 ttataagttc tgacaaatga ccacatgttt tcattatcta gtctaactga accttgttaa
      481 tccaacttaa ttaggaagat cgaatattat atgatatgga ggttcagtca ctataacaga
      541 gtatggattc gatattgtcg aggattcatc cgtggccctt cgcaggatgg acaactgaca
      601 tggaatctga tgcttcgcaa tataatattc tgaatctagc tgattctttc atagaacaaa
      661 tgataaaaat aagaaatacc cttcgcataa tgtctatttc agcattgatt ttagctccct
      721 ttgcaattgg acttgctatt tatcttatta atcatccatc attttttaat gtactacaaa
      781 cccaaggtga atttggagtt attcttagtg tattattagg ctcagtaatt ggaatatcct
      841 caatatggat gatagctgga attagacagt atcttttgat tgattcttgg aacaaaaaat
      901 atcaattgtt tgtttcaaga aagaacgaga tagacaatga gatcgcaagt gaatttatct
      961 ctgataacga tttcctggag tgagagaatc ctctaacatc gcgcattaga tcctaacatg
     1021 atagaaaaga atacatcctc agggataatg agttaccgtg atagagttta catagtcagc
     1081 gatataattc taaagctcat agaatatggt aaaatgaatc aaacagctgt cacaactttt
     1141 tgtgggctca atataagtaa gcatagatct attcttgaca agatggaaca aaatggacta
     1201 atagaaagaa cagagcaagc tcttgggaag agatcaatta ctatttacca gtgtactccc
     1261 aagggagttg agttctgcaa gaacatccta gaaccgtacg agaaaatgtt tcctaggaca
     1321 gaaaaattcc gtggctcaaa ggctactttc gcgagggaga atttatccct ggggctaact
     1381 gaagcaaatt tttatgagcc aagtcctgtg tgttgagcaa tcatagagtt gtttccactc
     1441 ttcagattca atcaaggcaa gtaataactg taacatgcaa tcacgtagaa ttaccccgga
     1501 atgaaagtaa atcaaaaaaa taggatttca ctatcctgct accatctgag tcggtttttt
     1561 cttaatattg tagtccttac ccttcagttc ttttaggtgg gtgctaaaaa accagataac
     1621 taatggtatg cttatgccaa cgacaaaatg ccatccactt tctatagtca tattcatgat
     1681 cacctcctac cttcttgttt tgatgaccct ctacaaatta gcagaggata cacgagaaat
     1741 gcgaagacta ttgggatgac aataagcaac ctgttttgat atattagctg aaatatttct
     1801 ccgctcaaca aggctgctat tattaatagc acgcataaga taggtcttga ttaactatgt
     1861 tattcgataa agctctgact gactgtatgg acacatttgt tgccagtaga atcagcaact
     1921 attgtgatgt ctagtttaag tttgttctag ttcagtttca cttctagtaa aatagggacc
     1981 aaaatgcata tcatgatacg attgcacagt catgaaaaag ataactattc atttctaaaa
     2041 gaatcatgcc cattgtgcac gtctatagag ggccgaattt ccctgacact taaatcctta
     2101 aactcccata ctaaatcatc agatctgaag gtagctatgg gtcctccact tgttattatg
     2161 taatctttag gtttgtcaca cttcgcactg taaaagagtg aatcgcttgt cttagcatgc
     2221 catcctccat tatctacgac atcagccacc ttaatccaat cattagttcc ggtactatcc
     2281 aaatacgatt ctaattttac tgcagtatca ttctgtatgt tgtagataat cgccttccat
     2341 ccgacccacc ttcctattag agaatctgta accttttcgt gggctctttc ggtagtatat
     2401 ccacctgtaa accaaatttc cttcttccat ccgacatgac catccacata gatgcctccc
     2461 atgtatgcag taccttcaca tggcatgtgt ggattatgtt tgccccctct tgcataccaa
     2521 gtcaggtcct catttgcagt accattgaag ggaacaacaa ttgaatctac tttagcataa
     2581 cctgtgattt ccacattctt ccaattttgc gcgcctgttg gtgtattaac attcatcctt
     2641 acctcatcat aaaacttacc agacgtcagc tttcctgtta tcctccatga accatcttgc
     2701 tgtctactca agttggattg gggattgaat attccgtcac ttgttgggtt ttccatgttg
     2761 ataaaccatt ctcgtcctcc gggctttgta ggataaatct ccattattcc aaacttgtca
     2821 aactttttac ttgtagaaat gagaggtaga gatagaggct ttataatata cgcagacaga
     2881 aaaaagagta atattgcaga taggatgcca acgcccgtaa ttatgatggc gcttctcttg
     2941 cttatttcaa tcttcttcat ctttaagtcg acctaattta ctaaaacatt acaagggatt
     3001 tcaattaatc cttcgttctg acagcatatt gcaagaccaa gttgtcaaaa taacgatcaa
     3061 aacttccgtt agtcataata tcatctgaat acagaccaag ggcaataacc cgtcctttta
     3121 aataatttag ttcgtatgtt gcaataacta cgctcccttt atcagtcaaa ttactgggtg
     3181 gcatcgtcgc attatagttt aacagaatta tatcgtttgg attagttaca tactgttctt
     3241 catgaggcaa gtagttaaag ggattatttg caaatttggc tatgttgctt atgtaattgc
     3301 ttccaaccca ttctgctgtt tcgttcctcc acctttcgtt tatacttcgc caagacgaga
     3361 tgccgttaaa tgcccagcta tgacctttaa caagggtaat gttgcctgta tttctatcat
     3421 atttaacttc agcataaaat acattcccat ctaggatgat cattgtacct ccatcaccca
     3481 caaatttctt aaagttatca tattctttct gagtaacgta ttcttgatga ccaagaatta
     3541 ctacgtcata tgcattactt ccgtttcttt gaaatattga acctgcgtca acatcccgat
     3601 cagttagaat ggcgacaatt gagtcaggac ttatccattt tagattccca attagataaa
     3661 gcatagcaaa tcctgatgca cttgaggaag gctcattagt aa
//
LOCUS       DASSIK010000141         2119 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1405643, whole genome shotgun sequence.
ACCESSION   DASSIK010000141 DASSIK010000000
VERSION     DASSIK010000141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2119)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2119)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2119
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1405643"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1184
                     /locus_tag="VFI64_02640"
     CDS             <1..1184
                     /locus_tag="VFI64_02640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242216.1"
                     /translation="SQGIAAFIGIWAIVTVTQYYVLAFVKHNNKESRARTGSLNLIHS
                     IVTIAQFLLTGIIALVILQIFIAQEYNTIMLYITLSVSYGLWIVTLGLLAKAFFSWYK
                     LRKNLMVLIFALSMVAYVINGVFGLYSEVDGLAKRSSIIRTGDVAIFPESPSSINDVY
                     QIASSVGYVLTWIATVMLLRPYIEKLGKLKFWSIMIVTMGYYLISFPLFSLGYFAPSE
                     NSNAMTNILIFSLSAIFTGILFGVAFLSVARTLKIGTPARNYMIIAAYGFLLFYIAGS
                     AFVSQAAYPPYGLISVSFTGLSCYLIYNGLYFSAISVSQDMTLRQSIRKSVMEQSKLL
                     DSMGSAEMERELQKQVLTVAKKTSAAMADKSGVEASLKEDEMKSYMEFVMNELKSKRI
                     S"
     gene            1475..2110
                     /locus_tag="VFI64_02645"
     CDS             1475..2110
                     /locus_tag="VFI64_02645"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF017026.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HET7242217.1"
                     /translation="MSRSAKEWSNAQNALAYLNVADTLPHRSEGESVLLDHIPQNARR
                     ILDLGTGDGRLIRLIKSIRPEIEAVALDISPTMLKSAREHFANDSTVKVIEHDLSQPL
                     PDLDYFDAVVSSFAIHHLKHERKQSLYEEVYDILNPTGIFCNLEHVASPSVELHIRFL
                     SAIGYTPGKEDKANRLLPMETQLGWLKDLGFVEVDCYWKWLEMALLIGYKA"
BASE COUNT          654 a          383 c          406 g          676 t
ORIGIN      
        1 ctagccaagg aatcgcagcg ttcattggaa tttgggctat tgtcacggta acgcagtact
       61 atgttttagc ttttgttaaa cataacaata aagaaagtag agctagaact gggtccctaa
      121 atttaattca cagcattgtg actattgcac agttcctatt aacaggaatc attgcactgg
      181 ttattttaca gatattcata gctcaagagt acaatactat tatgttgtat atcacattat
      241 ctgtaagtta tgggctctgg attgtaacct tgggtcttct agctaaagcg tttttttctt
      301 ggtacaagtt aaggaagaat ctcatggttc tcatatttgc attatctatg gttgcttatg
      361 tcatcaatgg agtctttggt ctatatagtg aagtcgatgg attggcaaaa agaagctcta
      421 taataaggac tggtgatgtc gcaatctttc cagaatctcc ctcctcgatt aatgatgtgt
      481 atcaaatagc gtctagtgtc ggttacgttc taacgtggat tgcaactgtc atgctgctca
      541 gaccatatat tgaaaaattg ggtaagctta agttttggag tataatgatt gtgaccatgg
      601 gatattatct catttcattt cctcttttct ctctaggtta ttttgcgcca tcagaaaatt
      661 caaatgcaat gactaatatt ctcattttct cgctttctgc cattttcaca ggaatactat
      721 ttggagttgc gtttttatcc gtagcaagaa ctttgaaaat tggtactccc gccaggaact
      781 acatgataat tgctgcctat ggtttccttc tcttctatat cgctggctct gcttttgttt
      841 ctcaagccgc ctatccacct tatggcctta tctctgtatc ctttacagga ttatcttgtt
      901 acctaatata caatggtctt tatttttcag caatttcagt ttctcaagac atgaccttgc
      961 gtcagtcgat aagaaaatct gtaatggaac aatcaaaatt attggatagt atgggctctg
     1021 cagaaatgga aagagaatta caaaagcaag tactaacagt ggcaaagaaa acatctgctg
     1081 ctatggcaga caagagtgga gttgaagcat cattgaagga agacgaaatg aagtcataca
     1141 tggaatttgt tatgaatgag cttaaaagta aaagaatttc ctgaacgcat tttaaagtaa
     1201 gtcaaaaaat agggtcgatt ctgtcaccaa ttccactgga atatactaca aagacttaca
     1261 ctcacgacta ttttttgttc ttggctcctc attcaatcat tagtatcgga gatctaacgt
     1321 attgaatata cagacgcaaa aaaacttcta gcttggcaat aatatcttag cataccagtt
     1381 caaattaaca ttgaaaataa tcttagctgc actaatccaa aatcgatcca gttctaagaa
     1441 aagtattaaa aaaagtacat cttcatgttt tactgtgagc cgatctgcga aagaatggtc
     1501 taatgctcag aatgctttag catatctaaa tgttgccgat actcttccgc atcgctcaga
     1561 aggcgaatct gtcctgttag accatattcc ccaaaatgca agacgaatcc tagacctggg
     1621 taccggtgac gggcgattaa ttagattgat aaagtcaata agaccagaaa tagaagcagt
     1681 agcgcttgat atatctccaa cgatgctcaa atctgctcgc gagcattttg ctaatgattc
     1741 aacggttaaa gttatagaac acgatctcag tcaaccttta ccagatttag actattttga
     1801 tgctgttgtt tcgagctttg caattcatca tcttaaacac gagcgaaagc aatcactata
     1861 tgaagaagta tatgatattc tcaatccaac aggaattttt tgtaatctgg aacatgtcgc
     1921 ctctccctct gttgaattac atattagatt tctaagtgcc atcggatata caccgggtaa
     1981 agaggacaaa gcaaatagat tgttgccgat ggaaacacaa ttaggatggt tgaaggactt
     2041 gggatttgtg gaagtagatt gttattggaa atggcttgag atggctttgt taataggata
     2101 caaggcataa gaagattac
//
LOCUS       DASSIK010000142         2043 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1208260, whole genome shotgun sequence.
ACCESSION   DASSIK010000142 DASSIK010000000
VERSION     DASSIK010000142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2043
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1208260"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            212..559
                     /locus_tag="VFI64_02650"
     CDS             212..559
                     /locus_tag="VFI64_02650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242218.1"
                     /translation="MVDLVLRGKVGKTGLMYVPYYGKSRAFISNYKSWKKYETEGKTS
                     AIATSIISHESIHLTLNKFSLTASAKLDNLFGRSNSWENYSHGLGDLGNFVSRSLSNN
                     DERKSKKARVKRR"
     gene            570..998
                     /locus_tag="VFI64_02655"
     CDS             570..998
                     /locus_tag="VFI64_02655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2203 domain-containing protein"
                     /protein_id="HET7242219.1"
                     /translation="MELQKDFTNMGVYFTPQDVNKILPEIQKQFSQIILLRNKVISLQ
                     EDLQKITNEGSKFSNFIAKKQELNSAVSRLYKEIEGLEKRGIMIKSVDDGLLDFPSLR
                     FDEEVWLCWKYGESEIKFWHGRDEGFMGRKPLASASIIEP"
     gene            1271..>2043
                     /locus_tag="VFI64_02660"
     CDS             1271..>2043
                     /locus_tag="VFI64_02660"
                     /inference="COORDINATES: protein motif:HMM:NF016593.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate-binding protein"
                     /protein_id="HET7242220.1"
                     /translation="MPNDILRFDKGRDYSIHLKKLDTKKNPFDLFKKIYRKYARAFML
                     ESLTGPRELSEFSIVGFDPEIIVECDFQKFWATDREGLLVYETEVNDPLKQLKSIMPI
                     VTNDRYRFIGGAVGYVSYDAIRFWEFLPPIKKSAAQFPLFNFGIYCDGLLYSQEKRET
                     YYFYIGKKSRLPEIERVICDNENEENEEQERISYSKPRSEIDKYGFMKKVEKARKHIY
                     NGDIFQVVLSRKFSFLLQGDPLIIYQELRKMNPSPYMYFL"
BASE COUNT          753 a          318 c          391 g          581 t
ORIGIN      
        1 gatcaaactt ggaaaaactt tcaagttctg gtcggaaatc ataaaatgta tttaacaaaa
       61 ttacatcgga tagtcttaga aacacgtatt tattataaaa agacattaaa acatttaaaa
      121 ataaatggaa aaactttaag tatcgctcta aaaattttcc tgaaaacatt aatcaatatt
      181 aggaacaata ttcacgtagt caaatgaagt ggtggtagat cttgttctaa gaggtaaggt
      241 tggtaagacg ggcctaatgt acgtgccata ctacggaaaa tctcgtgcat tcatttctaa
      301 ctacaaatcg tggaaaaaat atgaaacaga aggaaagacg tcagctatcg ctacttctat
      361 cataagtcat gagtcaattc atttaaccct aaacaaattt tcacttacgg cctcagcaaa
      421 attagataac ttgtttggac gatctaattc gtgggagaat tattcacatg gactggggga
      481 cctaggcaat tttgtatcca gatcactaag taataatgat gaacgaaaaa gcaagaaagc
      541 tagggtaaaa aggagataat aatctataaa tggagttaca aaaggatttc actaatatgg
      601 gtgtttattt tacaccacaa gatgttaata aaatcctccc agaaatacaa aaacagtttt
      661 cccagatcat cctacttagg aacaaggtaa tttctttaca ggaagattta caaaaaataa
      721 ccaatgaagg atcaaaattc agtaacttta ttgcaaaaaa acaagaatta aacagcgcgg
      781 tatctaggct ttataaagag atagaaggac tagaaaaacg aggcataatg ataaaaagtg
      841 ttgatgacgg cttattggat tttccgtctc tgcggttcga tgaagaggtt tggctatgtt
      901 ggaaatatgg agaaagcgag ataaaattct ggcacgggag ggacgaggga tttatgggac
      961 gaaaaccact cgccagcgcc agcattatag aaccttaatc atgcgtttac aacgacatcg
     1021 ttgatgtcgt gtgcacttca tttaatgtaa cttccataat gacaaagcca ttacgttcac
     1081 actaataaga acgtttgagt attgtattaa aagagtataa ttgtcccgat gtgcaagcac
     1141 aaactagtta tagaatggtt ccccagtctc ggtgatacta agctaaggtt aaaaatgatt
     1201 ggctttcatt cacaagattt aaatcgcata ctaagagttg atataaagat attcgtggta
     1261 gtcaatatta atgcctaatg acatcctgag atttgataaa ggtcgagatt attcgattca
     1321 cttaaaaaag ctggatacaa aaaaaaatcc atttgatcta tttaaaaaaa tttacagaaa
     1381 atatgcgcgt gcatttatgc tggagtcatt gacgggtcct cgggaattat ctgagttttc
     1441 catagttggt ttcgatcctg agataatagt cgaatgtgat ttccaaaaat tttgggccac
     1501 ggatcgagaa ggattattgg tgtatgaaac tgaggttaac gatcctttaa aacaactaaa
     1561 aagcataatg ccaatagtta ctaatgatag atacagattt attggcggag cagtaggcta
     1621 tgttagctac gatgcaattc ggttttggga atttctacca ccaataaaaa aatcggcggc
     1681 tcagttccct ctattcaatt ttggaattta ttgtgatggt ttattatata gtcaagagaa
     1741 acgagaaact tattacttct atattgggaa aaaatcaaga ctacctgaaa tagaaagggt
     1801 catatgtgac aatgaaaacg aagaaaacga agaacaagaa cggatttcct attccaaacc
     1861 aagaagtgaa atagacaagt acgggttcat gaaaaaagta gaaaaagcaa gaaaacatat
     1921 ctataatggc gatatatttc aggtagttct ttcaagaaaa tttagttttc ttcttcaagg
     1981 agatccattg atcatctacc aagagcttcg gaagatgaat ccttcaccct atatgtactt
     2041 cct
//
LOCUS       DASSIK010000143         2117 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1406423, whole genome shotgun sequence.
ACCESSION   DASSIK010000143 DASSIK010000000
VERSION     DASSIK010000143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2117)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2117)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2117
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1406423"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(232..435)
                     /locus_tag="VFI64_02665"
     CDS             complement(232..435)
                     /locus_tag="VFI64_02665"
                     /inference="COORDINATES: protein motif:HMM:NF018961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dodecin"
                     /protein_id="HET7242221.1"
                     /translation="MVYKYIDIVGTSPNGIDDSIRNAVEEAAKTVKNLQWGELGRVTV
                     RIEEGKILEFQSEVRLGFKIEHG"
     gene            776..1738
                     /locus_tag="VFI64_02670"
     CDS             776..1738
                     /locus_tag="VFI64_02670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetoin utilization protein AcuC"
                     /protein_id="HET7242222.1"
                     /translation="MCRTAILFGNELSRYSFGEKHPWNSGRLQAFYSRINQLDVINSS
                     NVKLIPPVIADESIISSFQTKEYVEFVKRCSKNGQGYLDQGDTPSFKGVFEASSYVVG
                     STLLALEMVVNKIDGIVHAFNPIGGLHHARRNSAAGFCVFNDIGIAILQARNKYNIKK
                     ILYIDIDAHHGDGVYYEFDDDPDVYIADIHEDGSSLYPGTGFESENGSGKGKGTKLNL
                     SLSSGATDHDFIAAFTKVEDFISSLKCDLIIFQCGADGLKGDPLTHLQYTHKAHKYAA
                     EVLHEYAHKMCNGRIIGLGGGGYNRENIANAWTEVVKTFIMNYP"
BASE COUNT          674 a          367 c          397 g          679 t
ORIGIN      
        1 gaatgaacgt agttgttctt ttaaaataat acatgattgt ccaagtcaga gcctgttacg
       61 acacaatggt attttcttga gtgagtacat gtcaacgagc aagttcaata gatttccgtt
      121 caattcattt ctaatgcgcc aattgaaggg tagtaaaata cctacctaat gtcaatacta
      181 tcaatgacag gcaagtattt gtctccggtt gtggatagtt aggaaattta actagccatg
      241 ttctatcttg aatcccaatc ttacctccga ctggaattct aatatcttcc cttcttcaat
      301 tctgactgtt acgcgtccta attctcccca ttgcaaattc tttactgttt tggctgcttc
      361 ttccactgca tttcttatcg agtcatctat gccattaggc gaagttccca caatatcaat
      421 atacttgtag accatgaaaa acatattgac ctattttcat ataaatattc actactcaca
      481 ggctatcaat tccattcata ggttatagca ataagagcta atgattaaaa tgtgactgac
      541 gccaattcat attattttca gaaatcctgt tttgcactaa tacttaatta ttttctatca
      601 agttgaaaca atattggtat tgacgttcaa aataaaggtc gtaatacaaa tcccaaactc
      661 tcataattag tgctcaaaag agtattgtaa ttcctcaaca ataatgttct catcccaata
      721 aagattcgta ggatcttcgt aaattactaa tactcgacta cgtaatacaa gtataatgtg
      781 tcgtactgcc atcctttttg gcaatgaact ttcaagatat tcgtttggtg aaaaacaccc
      841 ttggaactct ggccgactgc aagcatttta ttcaagaatt aaccaattgg acgttataaa
      901 ttctagtaac gtaaaattaa tccctcctgt tattgcagat gaaagtataa tttcttcctt
      961 tcaaactaaa gaatatgttg agtttgtaaa gaggtgttct aaaaatggtc aaggatatct
     1021 ggatcaaggg gatacacctt ccttcaaggg tgtatttgaa gcgtcatctt atgttgtggg
     1081 ttcgacgtta ctagcacttg agatggtggt taacaaaatt gatggaatag ttcatgcatt
     1141 caatccaatt ggtggccttc atcatgcacg aagaaactcg gctgcgggat tctgtgtatt
     1201 caatgatata gggatagcta ttcttcaggc taggaacaaa tacaatataa agaaaattct
     1261 atatatcgat atagatgcgc atcatggaga tggtgtttac tatgaatttg atgacgatcc
     1321 tgatgtttac atcgcggaca ttcatgagga tggttcatca ttataccctg gaactggatt
     1381 tgaatcagaa aatggatctg ggaaggggaa aggcactaaa ttaaatttgt ccctcagttc
     1441 tggtgcaact gatcatgatt ttattgccgc ctttacgaaa gttgaagatt ttattagctc
     1501 tctaaaatgt gatctcatta tatttcaatg tggagctgat ggtttaaaag gagatccctt
     1561 gacacattta caatatactc ataaagcaca caaatatgct gcggaagtat tacatgaata
     1621 tgcccataag atgtgtaatg gaagaatcat cggactaggt ggaggaggat ataatagaga
     1681 aaacatagct aatgcgtgga ctgaggttgt gaaaaccttt atcatgaact acccttaaaa
     1741 tgcacatgca ggtcggaatt attttaatat accaaagtcg tatttgttat gagatattag
     1801 aacaaaagca atattattag tcttatttga tcgtcttttt tgatgcaatt tcaaatagtg
     1861 aaggaaccga tgtcgatcat agaagtggat atgaactaaa gtgaaagtat tacagcaaat
     1921 gccggagcaa tggtgtacat gtctggcaac atagatattg ataccaagat cagggacgga
     1981 ggattttttg cgaaattgaa ggtttccact cttggaaggt caatctcttt ttgttaacga
     2041 gtttacttcg aactctgatg gaggaaaact aggtctaacc gggcagcccc tcggtgacat
     2101 aataaaaatc tcgattt
//
LOCUS       DASSIK010000144         2487 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_422052, whole genome shotgun sequence.
ACCESSION   DASSIK010000144 DASSIK010000000
VERSION     DASSIK010000144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2487)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2487)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2487
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_422052"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(295..600)
                     /locus_tag="VFI64_02675"
     CDS             complement(295..600)
                     /locus_tag="VFI64_02675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242223.1"
                     /translation="MVLTREEIIKEQLGRAVKDILEQLPWMAEVFRNPSYDLNKTVEN
                     EMDFFLGAVLGEILERYTQYLLNKQIKPSTEEFAWINQTLFSRANEFKDLIRKIVQV"
     gene            798..983
                     /locus_tag="VFI64_02680"
     CDS             798..983
                     /locus_tag="VFI64_02680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242224.1"
                     /translation="MTSRKKKSKTEDIIPEEINDHLKLFGKEPWEVDYNKFGRCEMCG
                     SRIDEFGYCACSAGSVG"
     gene            1614..2090
                     /locus_tag="VFI64_02685"
     CDS             1614..2090
                     /locus_tag="VFI64_02685"
                     /inference="COORDINATES: protein motif:HMM:NF024804.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HET7242225.1"
                     /translation="MDLKLSAVDKELLKILLVPDGKRPSASLSKKLGIPLTTIQRRRK
                     RLEKEFLQSSYSLNLDKFGWRRIDFLISTRNGKTDEVANKLIELDQVTYVGKSIGEHT
                     IDLRAETIVKDNGQLLDLLEKIKAMDGVNDAIWSEIVKVVGRKRSIPSNIIDQLGI"
BASE COUNT          786 a          433 c          490 g          778 t
ORIGIN      
        1 caataagaag ctgaatcttc acgatgactt gttttaatag taattgttga tattgctctt
       61 ccagattgcg gatattcctt actcacctta ttcatttctt catgcctgtt gacttccaaa
      121 tgctatgccc ttggctgtga gtttcttgga tagtttcaat aataatcgtt gtagaacaat
      181 acttggaatt cagcatatag ttgttggatt acaattcaga ggggggagaa gtgccttttg
      241 atttaggatg atgtggtgat gagactaatg gatgaaaaag acgtggtaaa cacgttatac
      301 ttgtactatc tttcgaatta gatctttgaa ttcatttgct cgtgagaaca gagtttgatt
      361 aatccaagcg aactcttctg tggaaggctt gatctgttta ttcaaaagat attgtgtgta
      421 tcgttccagt atttcaccca agactgctcc taaaaagaag tccatctcat tctctacagt
      481 tttatttagg tcataggagg gattacgaaa gacttctgcc atccaaggca attgctcaag
      541 aatatctttg accgcacggc ctaattgttc ttttatgatc tcttcccggg tcaataccat
      601 tagttcagtg agtgattttt ggtaatatct tcttacctgg acaaagggca aaatttagac
      661 aatcttcgat tcgctataag gaacaataag ttcaatagaa tggaaatgat tggtattggt
      721 gatggttaca agaagattgg gagacataac catagttgat agaagatcca cgatttatat
      781 aaaagatcga atatgaaatg acaagtagga agaaaaaatc caagactgag gatatcattc
      841 cagaagagat taatgaccat cttaagttat ttggtaaaga gccgtgggaa gttgattaca
      901 acaaattcgg tcgttgtgaa atgtgtggtt ccagaataga cgaatttggt tattgtgcct
      961 gttctgcagg tagcgtaggt tagattatgc taaaagacgg atatatgacc gaatttatta
     1021 tttatgggca agttaaattc tgtactcaag tcaaacatcg tattccaaca tatagaatat
     1081 ccacttctga aaaaacctaa caaacttgaa gagctataat cgtttccgag tacaagttta
     1141 aggacggcgt acccagcccg atcaatactg acctatctga ttgacagttt tggacgacct
     1201 tctcctgaac gaacaatgtt aaggaatcgt taatattcat acccacgatc gaatgcttac
     1261 gtcaggcatg acaaaatata catggaggga tacgaattcc tacccctctc cctccatggc
     1321 tttgatttgg tagttcatta tgattacaaa ttaagggatt gattctgcct cacatttaac
     1381 taggttcgta gtctattctc tcaaactgat tattactcag agaagcgttg ctgaaatctg
     1441 ccgttcagtg ctatcaccga tcatggaaat ggttttactt gccatgatta tcaaggccgg
     1501 aacaacaatt aaatagcctt tttgaggaaa ctcctaccac tttcgctatc cttaacatcg
     1561 gaatttatag tttaatcaaa aagtttattg cctttataag atactactta tgtgtggatc
     1621 taaagctgtc agcagttgac aaggaattat tgaagatact tctcgttcct gatggcaaac
     1681 gaccttcagc atctttatct aaaaaactag gaatcccact taccacaatt cagcgaagac
     1741 gcaagcgact agaaaaggaa tttttgcagt cttcctattc gctgaaccta gataaatttg
     1801 ggtggaggcg aatagatttt cttatttcaa cccgtaatgg taagacggat gaagtagcaa
     1861 ataagcttat tgaattggat caagtaacgt acgtaggaaa gagtattgga gagcatacaa
     1921 ttgatttaag agcagaaaca attgtgaaag acaacggtca acttcttgac ctccttgaga
     1981 aaataaaggc tatggacgga gtaaatgatg ccatctggag tgaaattgta aaagtggttg
     2041 ggaggaaaag atctatccct agtaacataa tagaccaact cggcatatag caataaagat
     2101 agaacttcta atgtttttat tttttctatc gtgttccttg tgattatacc ttacattccg
     2161 tctcagatcc aattaacact cgggggaatc tgtgggttca tttaaaagcc gtgatatttt
     2221 taaataacat tcatttctag taataaaacc tcaaaatctt aagtccttgc tctacgaata
     2281 tctgatgaca ggaaaatgat cattctcccc acagttaagt tttgaataat atagttagtg
     2341 acttgactaa acggcatttc tatcatggat atcctttatt taataacaaa agttttttga
     2401 attaaaaact gactggctgc tcaatgggcc ggaaagaagt aagcagccag tacagacaat
     2461 tagattttgt ggctggctgc cgattgt
//
LOCUS       DASSIK010000145         2044 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_717458, whole genome shotgun sequence.
ACCESSION   DASSIK010000145 DASSIK010000000
VERSION     DASSIK010000145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2044
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_717458"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..411
                     /locus_tag="VFI64_02690"
     CDS             <1..411
                     /locus_tag="VFI64_02690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242226.1"
                     /translation="TSDLKMTYGTISMYSHDDFRKKVDSGLIKLGSFFGDMAKTSIGT
                     NIYGGLRIGVSSHVHGGFVTRDIPSYVIFGAGMGAENVELELSSAIRTQKRMMSRRDV
                     KMSAQYESLMIDVFEQTADERSKKGVKAKKFSMQ"
     gene            complement(430..1905)
                     /locus_tag="VFI64_02695"
     CDS             complement(430..1905)
                     /locus_tag="VFI64_02695"
                     /inference="COORDINATES: protein motif:HMM:NF014411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase"
                     /protein_id="HET7242227.1"
                     /translation="MRQKRSSNDNYIYLKKKILPIRIFPQVLERTRKHSGNNGGSPIL
                     SVVIGTKPDFYKQAPILIEAIRQKLPSFVIDTGQHFDELLGFGIKEFDLEDQIACNMQ
                     IRGDLMEKASELILKFGSFGRYWRKEFGNSSHLLPIVHGDTLVAGIAPLAWVFGMGQK
                     VAQNEAGLRSMSPDSIKHLRVREDPTKSFVEKFIESQFEGGWFYAREEPFPEQIDTWI
                     CSAGTQFFFAPTKINKDNLIREGYPEEFIRVVGNSVVDAIEIKRKHRPSTSIFDLYPK
                     LETGEWLRMDIHRRENLTEHRFSSIIKSLTYLIKNSNHKIILVMLNAMKSALRSYNLE
                     QSLINLAKSYPKKFLITPLWREYSQVIEFLDSGHCWAEITDSGSMQEELLYFPKVLSL
                     TVRLNTDRPETIFDARSNILLPPVNPTWITAIIDEAFNRSEGLGLQLKKKKKIYGQPG
                     KVSKEIVRVIKKEFENGDANFYPWLHQRIGLWKERQVIEYM"
BASE COUNT          578 a          415 c          388 g          663 t
ORIGIN      
        1 acttccgatc tgaaaatgac atatggtacc atatcgatgt attcccacga tgatttcaga
       61 aaaaaagttg attctgggtt aatcaaactt ggatcctttt ttggcgatat ggctaaaacg
      121 tcgattggta cgaatattta tggaggatta aggattggtg tatcatctca tgttcatggg
      181 ggatttgtta cacgagatat tccaagttat gtcatttttg gagccggtat gggggctgaa
      241 aacgttgagt tggaattgag ctccgctata cggacgcaaa aaagaatgat gtctagaaga
      301 gacgtgaaaa tgagcgcgca atatgaatca ttgatgatag acgtctttga gcaaacggcc
      361 gacgagcgct caaaaaaggg cgtcaaggca aaaaaattca gcatgcaata atagtagtaa
      421 tagtaggagt tacatgtact ctataacttg tctctccttc catagtccaa tcctttggtg
      481 taaccatgga taaaagttag catctccatt ttcaaattcc ttcttaatta ctctcactat
      541 ctctttagaa acctttccag gttgaccata gatctttttc ttctttttca gttgcaatcc
      601 caacccttcg cttctattaa atgcctcatc tattattgct gttatccaag taggatttac
      661 tggtggaagt aagatattac ttctagcgtc gaatatggtt tctggtctgt ctgtattaag
      721 ccgtacagtc aatgaaagaa cttttggaaa gtataacagt tcttcttgca tagaacctga
      781 atctgttatt tccgcccagc aatggccact atcaaggaat tcaattactt gggaatattc
      841 gcgccacaaa ggagtgatca agaatttttt agggtatgat tttgcgaggt taatcaagct
      901 ctgttccaaa ttataagaac gtaacgcaga tttcatagcg ttgagcataa ctaaaattat
      961 cttatggtta gagttcttga tcaaataagt aagacttttg attatcgaag aaaatctatg
     1021 ctctgtcaaa ttttcccgcc gatgaatatc catcctgagc cattcgccgg tttctagttt
     1081 aggataaaga tcgaatatac ttgtgcttgg cctgtgcttc ctctttattt caattgcatc
     1141 aacaacagaa ttccctacaa cacggatgaa ttcttcagga tatccttccc ttatcagatt
     1201 gtctttattt atttttgttg gtgcaaaaaa gaattgcgtg ccagcagaac aaatccaagt
     1261 atcgatctgt tctggaaatg gttcctctct tgcataaaac catccccctt caaattgaga
     1321 ttcaatgaat ttttccacga aagatttggt aggatcttcg cgcaccctta gatgttttat
     1381 ggaatctgga ctcattgatc tgagtcctgc ctcattttga gctacctttt gacccatgcc
     1441 gaacacccag gccaatggcg ctattccggc aaccagagta tccccatgaa ctattggtaa
     1501 cagatgtgaa ctatttccaa attccttcct ccaataccgt ccaaatgaac cgaactttag
     1561 tatgagttca ctcgcttttt ccataagatc gcccctgatt tgcatattgc atgcaatttg
     1621 atcttccaaa tcaaactctt ttataccaaa tcccaggagt tcatcgaaat gttgtccagt
     1681 atcgatcaca aaggacggca gcttctgtct tattgcttct attaatatgg gcgcctgttt
     1741 atagaaatcg ggttttgttc caattacgac agaaaggatt gggcttcccc cgttattgcc
     1801 agagtgtttt cgtgtgcgtt ccaacacctg aggaaaaatg cggataggga gtatcttttt
     1861 tttcaggtag atgtaattgt cattacttga tcttttttgt ctcaaaaatt ttcatccacc
     1921 agactcccat ggtttcgtgt aggtttctta atgagtagta caccaattat cattattcca
     1981 aaccccgccg caacaaacgc atattgtaat atttctatga atggcacagc ataagtttct
     2041 gggg
//
LOCUS       DASSIK010000146         4464 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1407490, whole genome shotgun sequence.
ACCESSION   DASSIK010000146 DASSIK010000000
VERSION     DASSIK010000146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4464)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4464)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4464
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1407490"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            115..423
                     /locus_tag="VFI64_02700"
     CDS             115..423
                     /locus_tag="VFI64_02700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HET7242228.1"
                     /translation="MSKVVIGKTSDIQQGKLTHVTAGGKEILVTMIDGKYYAMGNICN
                     HAGAELHGGELHGNELICPWHGAKWDMTTGELIWFPQKLKSEESYKVVIDDDTLFLEI
                     "
     gene            627..1007
                     /locus_tag="VFI64_02705"
     CDS             627..1007
                     /locus_tag="VFI64_02705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242229.1"
                     /translation="MEEHEFLMDLCFVVLSVDKSIRFAGVIDSNGKLLAGKYRNNIQK
                     PLITSSSTSNLSQNSLYSGYLTLAIKKRFESDLGELHFQLTEFDKVKLLTIPLTSRND
                     RYLCVSLDNIASYERTISKIIESI"
     gene            1084..2268
                     /gene="mpgS"
                     /locus_tag="VFI64_02710"
     CDS             1084..2268
                     /gene="mpgS"
                     /locus_tag="VFI64_02710"
                     /EC_number="2.4.1.217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050504 - mannosyl-3-phosphoglycerate
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mannosyl-3-phosphoglycerate synthase"
                     /protein_id="HET7242230.1"
                     /translation="MKLDVPRFTERFGTISMHGVQRVYELDSGYKTGKSKSEAIRTID
                     NEVISEIEGKMAIVIPIKGERLKLLEGVLSGIPHDCLTIIVSNSPRQPIDRYKLEREA
                     IEQFNRFAEKNSIIVHQRDPGVSEALREVGYADLLSNDGTVRNGKAEGMIIGMLLAKM
                     SGKDYVGFIDADNYVPGAVNEYVKIFASGIAMSTTPYTMVRVSWIYKPKVSDNGVYFS
                     KWGRVSEITNQYLNSVISYYTGFETEVMRTGNSGEHCLSMKLAESLTYSSGFSVEPYE
                     IINLLEEFGGIIPTEHQDAMDKGIEVMQIETRNPHFHEEKGDAHVRQMFLEALGCIFH
                     SKICHPELREKITSELQTRGLLEAEKEPPQLQRIRPFKDIDVALFSKILHEKSTSYLY
                     CE"
     gene            complement(2421..3272)
                     /locus_tag="VFI64_02715"
     CDS             complement(2421..3272)
                     /locus_tag="VFI64_02715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242231.1"
                     /translation="MIPAGYHQVSRNRGFRIIGLSIFSIAFIFLAYSTLTSSELPQIM
                     PQKLYGLAQVVIILTVICPIFFVYGLYLVVKFSIITTPNNPSLLSSAARIFKKRNYFK
                     LLIISSILYGLFFAYLSRILIYVPTEVSLDDAINFPSFALTLCCGSPGYFPMATIRLT
                     ENLSVLLIPLNLILAVSVSLLVGFNIVLNVHAFQLARSQARRKLSAVSSMGAFSGLFI
                     GCPTCAGGLFSVLLGFGTGTAVSILAPFQTLFILMSLPVLVLTSILLVRNTRNNERCE
                     SKDRQAD"
     gene            3425..3853
                     /locus_tag="VFI64_02720"
     CDS             3425..3853
                     /locus_tag="VFI64_02720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional nuclease domain-containing protein"
                     /protein_id="HET7242232.1"
                     /translation="MAENPPGHDEYITAHISYVGFVDQIGLEGILILKTRDGKEFPMR
                     AFSGEVARHILRFQEGDKTTLPTIYNLVEEISAMQDLLLLEVRIYRNGSVLRANLYFK
                     SRRDNLIFRNYRASDAIALAAYFDVPIKVRKTLFEETIEQ"
     gene            complement(3861..>4464)
                     /locus_tag="VFI64_02725"
     CDS             complement(3861..>4464)
                     /locus_tag="VFI64_02725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016879 - ligase activity, forming
                     carbon-nitrogen bonds [Evidence IEA];
                     GO_process: GO:0006188 - IMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1297 domain-containing protein"
                     /protein_id="HET7242233.1"
                     /translation="NLERAFFLVSSTKDYYEKSKIKINRHIIEEKDLRSAVIEEYVVG
                     AYFNFNFFYSPLSDESEFLGIERRLQTNLNDLNSMPARQQMEFEWDVKHIEIGHTPAS
                     IRESMLEKIFDIGDRFTRASKTEYPPGIIGPFSLQSIVTPDLEITVYDVSLRVPGNAI
                     MATTSPYTKYSHGHTFGVGRRIAMELKSAISNGAIDRVIT"
BASE COUNT         1458 a          807 c          889 g         1310 t
ORIGIN      
        1 ataagagcca attcagtttg gtagtttacg tagtagatac cattgaaatg gtatttcttt
       61 tcgaaaaaga tagacgtaag caaattaaaa tatagcataa ttacaatttt ctaaatgagc
      121 aaagtggtca taggaaaaac ctcagacatt caacaaggta agttgacgca cgtaactgct
      181 ggtggcaagg agattttagt cacgatgata gacggaaaat attatgcaat gggtaacata
      241 tgtaatcatg ctggagccga gcttcatgga ggagaattgc acggtaatga actaatatgt
      301 ccatggcatg gtgccaagtg ggatatgact acaggggaac taatttggtt tccgcagaaa
      361 ttaaaatcgg aggaatcgta taaagtagta atagatgatg acacgttatt cttagaaatc
      421 taatttttga atgtctaggc atataaacgt caactatatg tatttttcca tacttttttt
      481 ttcagattac caatcaagct cataaggata agaaatactc ctttgttatg agttcgacgt
      541 aatacgtaat agtactaatg aaagttttca gaagaattct ctaaagagtt attcttatat
      601 gatgcaatat gtagttcaag taaatattgg aagaacacga gtttctaatg gatctctgct
      661 ttgttgttct ttctgtagac aaaagtatta ggttcgcagg tgttattgat agtaacggta
      721 agcttttggc aggcaagtac agaaacaata tccaaaagcc actaattaca tcaagttcca
      781 cctcaaatct ttctcaaaac tccttgtatt ctggatattt gacactagct ataaagaaaa
      841 ggttcgaatc ggacctgggt gaattacatt tccaactgac agaattcgac aaagtaaaat
      901 tacttaccat tccattaaca tctagaaacg atcgttatct ttgcgtttct cttgataata
      961 ttgcgtctta cgagaggact atctcaaaaa taattgaaag catttgaaat tgatccatgc
     1021 atattaacat gagtaatgga atcccatttg caataaatat ggcttacgtc gccatcttcg
     1081 ataatgaagc ttgacgtacc cagattcaca gaacgatttg gcaccataag tatgcatgga
     1141 gttcagagag tttatgaact tgactcgggt tataaaactg gaaaaagtaa atcagaagcc
     1201 attcgaacga tagataacga agtcatttct gagattgagg gaaagatggc tatagtaatt
     1261 cccattaaag gagaacgttt aaaactcttg gaaggtgttt tgagtggaat tccccacgat
     1321 tgtttgacta tcatcgtttc aaacagtccg aggcagccga tagatcgtta taaacttgag
     1381 cgcgaagcta tagaacaatt taatagattt gcggagaaaa attccataat agtccatcaa
     1441 agagaccctg gtgtttctga ggcgctacgc gaagtaggat atgccgactt actttcgaac
     1501 gacggaacag taaggaatgg caaggcagaa ggaatgatta ttggcatgct tctggccaag
     1561 atgtctggga aggattacgt tggatttatt gatgctgaca attatgttcc aggcgctgta
     1621 aatgaatatg taaagatttt tgcatcaggt atcgccatgt caaccacacc ttacacgatg
     1681 gtcagggtat catggattta caaaccaaag gtctcagata atggagtata cttctctaaa
     1741 tgggggagag tgtcagaaat taccaaccag tatctaaact ctgtgatctc ctattatact
     1801 ggctttgaaa ccgaagtcat gcgcactggc aattcaggag aacactgtct ctctatgaag
     1861 ttggctgaat cactaactta ctcttcaggg ttttctgtcg aaccatatga aataataaat
     1921 ttattggaag aatttggggg cattattcca actgaacacc aagacgccat ggataaaggc
     1981 attgaagtaa tgcagataga aactcgaaat ccccactttc acgaagagaa aggtgatgcc
     2041 catgttaggc agatgttcct ggaggcttta ggttgcattt ttcatagtaa aatttgtcac
     2101 cctgaactgc gagaaaaaat tacgtctgaa ttgcaaacta gaggactgct cgaggccgag
     2161 aaagaaccgc ctcagctcca aagaatccgg ccttttaaag atattgatgt cgccttattt
     2221 agcaaaatcc ttcatgaaaa gtcaacaagc tatctctact gtgaatgaat tatttttctc
     2281 aatctacaaa agattaggat ttcgtcatta tttctatgtc tggaatggtt tactatgaat
     2341 gttcatagta actaaactta atatcttcag ctctagaaac atgatcctat ctcggctatt
     2401 tgtcctcggt ttgataatca ctaatctgct tgcctatcct ttgattcaca tctttcattg
     2461 tttctggtat tgcgtacgag aagaatggag gtcaatacaa gtactggcaa actcatcaaa
     2521 ataaacagcg tttgaaaagg agccaagatt gaaactgcag tacctgtacc aaatcccaaa
     2581 agtaccgaga acaaacctcc agcacaagtt ggacatccta tgaacaaccc gctgaacgct
     2641 cccatcgagg aaacggccga gagctttctt ctagcctgcg atcttgccag ctgaaaagca
     2701 tgtacattta atacaatatt aaaaccaacc aaaagtgaga ctgacactgc taggattaaa
     2761 tttaatggta tcaataacac ggataagttt tcagttagtc ttatggtagc cattggaaaa
     2821 tatcccggag atccgcagca taaagtcaat gcaaaagacg gaaagtttat cgcatcatca
     2881 agtgatacct cagtagggac atagataaga attcttgaaa gatatgcaaa gaataagcca
     2941 tacaagatag atgaaattat caacaacttg aaataatttc ttttcttgaa tatacgagct
     3001 gcggatgaaa gaagactagg gttattcggt gttgtaatga ttgagaactt gacaactaga
     3061 tatagtccat aaacaaaaaa aatgggacaa atcacggtca aaattatcac cacctgagcc
     3121 agtccatata atttttgagg cataatttgt gggagttctg atgatgtgag ggtagaataa
     3181 gccaaaaaaa tgaatgctat ggaaaaaata cttaatccaa taatcctaaa tcccctgttt
     3241 ctagagacct gatggtaacc tgcaggtatc aaacaattga tgactggagt cctcgcaaat
     3301 ttaacttaat tggaccggta gatattcatg gggtcagaat acacccttgt cttatccatt
     3361 cgacatgatt tcaatgacaa tgaaagcaca aaaaatctaa atttcagcag ttgttgttat
     3421 taacatggcc gaaaatccac ccggacatga tgaatacatt acagcccata ttagttatgt
     3481 agggtttgtg gatcagattg gcctagaagg cattctaatt ttaaagactc gtgatggaaa
     3541 agaatttcca atgcgtgcgt tctctgggga agttgcgaga cacatattac ggtttcaaga
     3601 aggtgataaa accactttgc ctactatata caacttggtc gaagaaatat cagctatgca
     3661 ggatttgctg cttttggagg taagaatata tcgaaatggt tcagttctca gagctaatct
     3721 ttatttcaaa agtagaaggg ataacctaat atttagaaat tatcgtgcct ctgatgcaat
     3781 tgcattagca gcgtattttg acgtccctat caaagtaagg aaaactctgt tcgaggagac
     3841 catagaacag taaagaatca tcaagtaatt actcggtcta tcgcaccatt agatatcgcc
     3901 gacttcaatt ccatggcaat tcttctccca accccaaagg tgtgcccatg gctgtacttt
     3961 gtgtaaggac tggtagtggc cataattgca ttacctggca ctcttagaga tacgtcatac
     4021 accgtgattt ctagatctgg tgttacgata ctctgcaaag agaatgggcc tattatgcca
     4081 ggtgggtatt ccgtctttga ggctctggta aatctatcgc caatatcaaa aatcttctca
     4141 agcatggatt ctcgtatgct cgcaggagta tgtcctatct cgatgtgttt aacatcccac
     4201 tcaaattcca tttgttgtct tgcaggcatt gagtttagat cattcaggtt tgtttgaagt
     4261 cttctctcaa tacctagaaa ttccgattca tctgataatg gggaatagaa gaaattaaag
     4321 ttgaaataag cgcctacgac atactcctct atgactgcgg accttaaatc tttttcttca
     4381 attatgtgtc tatttatttt tatcttggat ttttcataat aatccttcgt agaggatact
     4441 aggaaaaatg ccctttccag attt
//
LOCUS       DASSIK010000147         3568 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1407560, whole genome shotgun sequence.
ACCESSION   DASSIK010000147 DASSIK010000000
VERSION     DASSIK010000147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3568)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3568)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3568
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1407560"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(225..542)
                     /locus_tag="VFI64_02730"
     CDS             complement(225..542)
                     /locus_tag="VFI64_02730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein"
                     /protein_id="HET7242234.1"
                     /translation="MSQEIQQLRRLIFDELSKIVDPEIGVSISELELVDKVDISGGNV
                     DIDLHLTSPFCPAIFGFKIAQDVRDNVYKIQGIENVKVKVSNHFMADAITKQVNESKL
                     PTK"
     gene            695..2179
                     /gene="argH"
                     /locus_tag="VFI64_02735"
     CDS             695..2179
                     /gene="argH"
                     /locus_tag="VFI64_02735"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004056 - argininosuccinate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HET7242235.1"
                     /translation="MYRSRPKGELDRDTLNFLSSMNIDNEIISYDIMGTQAHLVMLYE
                     KGLLEVKPLKKILNELEILLQNPSKINRLGFEDIHEAIETHLVKKLGIEIGGSIQTGR
                     SRNDQVILDVRMKARDELNNIYSKIISLIDSILQKAEQNLGSIMLLYTHLQQAQIGNL
                     SHYLLSYSDQLFRDLDRLYLTYTRINKSPLGSGPVGGSTIPIDRERTAMLLGFDGLVT
                     NSLDATSSRDTIVELMSSLSILMITLSRIAEDLIIWSTQEFDYVELADKCASSSSAMP
                     QKKNPDPLELLRSRTTIVVGNLITSLGLLKALPSGYSRDLQDLKLVFLNSLSIVSSCL
                     TITDIVIGSLIIHKDRMKDAVINSYANSIDIAEQLVMQKGLVFRTAHKIVGSLVEMAL
                     SKNNASLSSLSVNEIEAVIKRTSVPLKGKDLLEILEQVTPEKVILLRSSIGSSNPDEQ
                     KKVIKSSKIRVQEYSDEIRKRKMLLNNALHNLRQVVISYTNKSS"
     gene            complement(2299..2390)
                     /locus_tag="VFI64_02740"
     tRNA            complement(join(2299..2361,2381..2390))
                     /locus_tag="VFI64_02740"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2335..2337),aa:Gln,seq:ttg)
     gene            complement(2423..>3568)
                     /locus_tag="VFI64_02745"
     CDS             complement(2423..>3568)
                     /locus_tag="VFI64_02745"
                     /inference="COORDINATES: protein motif:HMM:NF015940.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF354 domain-containing protein"
                     /protein_id="HET7242236.1"
                     /translation="LPKLCKIRVEEKFFLYRNFNKDRLRIWFDILTPKQVLFFKPIVD
                     NLLSSGKSVLCTSRKYRECTELAREKLLQIEIIGKYGGPLKYDKLRQSAKRTYELADT
                     VKEFEPDVAISFSSPEAARVAFGLGIKQIVFNDSPHAYAVGKLTIPLAQFLLCPWIIP
                     YHAWENFGIRRKQIIRYRALDPAVWLKRQQLKDVPASEKLRAKYRLTKEKTVVIRPEE
                     TKAAYMIYKKNKTTISLIQPLIENLHKTTNILILCRYEEQVEEISRRFGSKITVLDKI
                     VDGLELISIADIFIGAGGTMTAEAALLGKPTISISPIQFYVEDYLIRTGLVKKVSGPD
                     RLVDLVKKMFNDEPSLIRQKKLASFILNKMEDPMAKLNKLLDSYITL"
BASE COUNT         1091 a          688 c          650 g         1139 t
ORIGIN      
        1 atagattgaa tatagtggat gacagacacg gtttatggag atgtcatttt gccggttcgt
       61 gcagcaaagt ttgtcctaag ggagtagatc cggctttagg tatccaattg ttacggtcgt
      121 atatgctcgg aatttcaaag gacaacagaa agtcttaaaa tcataaccgt tatctgacct
      181 ggcgtaaact ttagcaatcc cgtaggaaaa ctaaaagcta ttggtcattt tgttggtaat
      241 ttactctcat taacttgttt ggtgatggca tcggccatga aatggttgct tacttttact
      301 ttcacgttct ctattccttg aattttatat acgttatcac gtacatcttg tgcaatcttg
      361 aagccaaata tggcaggaca aaatgggcta gtaagatgca aatctatatc cacgtttccc
      421 ccactaatat caactttgtc aacaagttcg agttccgaga tagaaactcc tatttcgggg
      481 tctacaatct tggaaagttc atcaaatatc aacctacgaa gttgctgaat ttcttggctc
      541 atgttattat gatccgattt attcctattt aactattaat ttaatgccat tctttttcaa
      601 acatctagtt actaaatatt cgaggatggt cctcaaaccc cccaatacaa ttctcaaata
      661 tagtattaaa taaagccctg tttgttcaat ccgcatgtat aggtcgaggc cgaaggggga
      721 actagaccga gacaccctta atttcttgtc ctccatgaat attgacaatg aaataatatc
      781 gtacgacatt atggggaccc aagcacatct tgtaatgcta tatgagaaag gtcttttaga
      841 agttaagcct ctgaagaaga ttctgaatga gctagaaata ttgctccaaa accctagcaa
      901 gataaatagg ctcggattcg aggatataca tgaagcaata gaaactcatt tggttaagaa
      961 attaggtatc gaaattggcg ggagtattca aacaggtagg tcgagaaatg atcaggttat
     1021 tctcgatgtt agaatgaaag ctagggacga attaaacaat atttactcaa aaattatctc
     1081 cttaattgat agcatattac agaaagcaga acagaattta ggctctatta tgctattata
     1141 tacccatctc cagcaggcac aaattggaaa cctttcacac tatctcttat cttattcaga
     1201 ccaattgttt agagatttag atagactcta tttaacatat actagaatca ataaatctcc
     1261 acttggttca ggtcctgtag gaggatcgac tattccgata gacagagaaa ggacagccat
     1321 gctcttaggt ttcgatggat tggtaacaaa ttcgcttgac gctacttctt ccagagatac
     1381 tattgtcgaa ttaatgtcct cattgtctat tttaatgatt acattgagta gaatagcaga
     1441 agatctcata atttggtcaa cccaggaatt cgattatgtg gaacttgcgg acaaatgtgc
     1501 gtcttcatcg agcgcgatgc cacagaaaaa aaatcctgac cctcttgagc tactacgatc
     1561 cagaacaaca attgttgtag ggaatctcat aacatcactt ggcttattga aagccttgcc
     1621 ttctggttat agcagagatt tgcaggattt gaagctagtt tttttaaatt cattgtcgat
     1681 cgtatcttct tgcctaacca tcacagatat tgtcattggt tctttaataa ttcataaaga
     1741 tcgcatgaag gatgcagtaa ttaacagcta tgccaattcc attgacatag ctgagcagct
     1801 tgtcatgcaa aaaggactgg ttttcagaac ggctcacaaa atagtaggtt cactggttga
     1861 aatggccctt tccaaaaaca acgcatctct ttcctccttg agtgtaaatg agatagaagc
     1921 cgtaatcaaa aggacatctg ttcctcttaa gggtaaagat ttactggaaa ttcttgaaca
     1981 agtgacaccg gagaaagtaa ttctgttgcg ctcatcaata ggatcctcta accccgacga
     2041 acagaaaaaa gtaattaaat cttcaaaaat tcgagttcaa gaatacagtg acgaaataag
     2101 aaagagaaaa atgctattga ataatgcatt gcataaccta agacaggtcg tgatttcgta
     2161 cacaaataag agtagttagt aacgtattgt gaaaaaatct aaatttttgt tatagttgac
     2221 gagctcttca aactgatata tccaagacca gaatactttc taatatagaa ataacctaag
     2281 actgataatt taatttaata gcccggccca gattcgaact ggggtcaaag gctccaaagg
     2341 cctctatgct tggccactac attcggcgaa tcgaagttct ctaccgggct tccgggcctg
     2401 aatttcgtat gccttaccat atttataatg ttatgtaact gtctaacaat ttgttcagtt
     2461 tggccatagg atcttccatc ttattaagta taaagcttgc gagtttcttt tgtcgtatta
     2521 atgatggttc atcattaaac atctttttta ctaaatctac aagcctatct ggtccactta
     2581 ctttttttac caatccagtt cggataagat aatcctcaac ataaaattgg attggtgaga
     2641 tagagatggt cggttttccc aaaagagcag cttcagcagt cattgtgcct cctgcgccta
     2701 taaaaatgtc tgcgattgaa attaattcca agccatctac aatcttgtct aaaacggtta
     2761 tttttgatcc aaaccttctt gatatttctt ctacctgctc ttcataccta cataggatta
     2821 gaatgttggt cgtcttatga agattttcga ttagcggttg aattaaagag atagtagttt
     2881 tatttttctt gtatatcatg taagcagctt tcgtctcctc aggccgtata acgacagtct
     2941 tctcctttgt aagtcgatac ttcgctctca atttttctga agcgggaacg tcttttagct
     3001 gttgcctttt tagccatact gcgggatcaa gtgctcgata acgaatgatt tgcttccttc
     3061 ttatgccgaa attttcccaa gcatggtagg ggataatcca aggacacagt agaaattgag
     3121 ctagtggaat ggtaagtttt cctactgcat atgcatgagg agaatcgtta aaaactatct
     3181 gtttaatacc cagtccaaac gcgactctcg cagcctctgg agaactaaaa ctaatcgcaa
     3241 catctggctc aaattccttt acagtatctg ctaattcata agttcttttt gcactttgtc
     3301 taagcttatc gtacttgagt ggtccgccat attttcctat tatctctatt tgaagtaatt
     3361 tttctcgcgc taattcagta cattccctat attttcttga agtgcatagt acgctttttc
     3421 ccgatgacaa taagttgtcc acgatcggct taaagaaaag tacctgtttt ggtgtcaaaa
     3481 tatcaaacca gattctcaaa cgatccttgt tgaaattccg gtatagaaaa aacttttctt
     3541 ctacccttat tttacatagc tttggtaa
//
LOCUS       DASSIK010000148         4265 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_622277, whole genome shotgun sequence.
ACCESSION   DASSIK010000148 DASSIK010000000
VERSION     DASSIK010000148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4265)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4265)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4265
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_622277"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            117..890
                     /locus_tag="VFI64_02750"
     CDS             117..890
                     /locus_tag="VFI64_02750"
                     /inference="COORDINATES: protein motif:HMM:NF040371.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6293 family protein"
                     /protein_id="HET7242237.1"
                     /translation="MSKLSSFITSSTPLRVHVSPVGFEVDRIILPAIKMKADRIWLII
                     HNNPSEDEGIHFLHSVKDKLGQNKIEFREERADRTDLFDTLRAFRTVLLRENGNNIMV
                     NVSAGSKIQAIASMLACMMFKSTFNVKPYYVTPEKYTTPKVQQTQGMKDILPLPEYEI
                     EIPSQKLVRCISIIASQRNGTITKKGLRDLALKENLIHVETEKNDKNKELAAYMSLNK
                     NLIQPLMKRNFINVEKVGGAHKITLTLEGKNALKFLRQN"
     gene            1104..1553
                     /locus_tag="VFI64_02755"
     CDS             1104..1553
                     /locus_tag="VFI64_02755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242238.1"
                     /translation="MGKEDKIPVRLEKIEEIRSVWSNPEFKTNREKLIQLFKDCKKVQ
                     EGYTTREFANAIFPEKMITLSDQEESNHVDTVTKYLERMLKTFGQDVTNHRIVLSSKY
                     VDGVYYYYNMVEDSTARDLVKGAKTYLGIEKKINQSFETFERRKPNK"
     gene            complement(1630..1947)
                     /locus_tag="VFI64_02760"
     CDS             complement(1630..1947)
                     /locus_tag="VFI64_02760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242239.1"
                     /translation="MKINITNEYRQCNLCGQGSYIQVEFVNDTLNGTINVRLCKSCIS
                     SIWKTIENVESIPCAKCGKPIRAERILKESESGYDYRSVTPGQEDPTTGVVFCYMCSS
                     GAI"
     gene            complement(1956..3026)
                     /locus_tag="VFI64_02765"
     CDS             complement(1956..3026)
                     /locus_tag="VFI64_02765"
                     /inference="COORDINATES: protein motif:HMM:NF012402.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HET7242240.1"
                     /translation="MANKEDFVKIAHIKDIQPLQMKMFQINGEEVCLVNVDGKYYAIN
                     NICTHEGGPLADGKLEGYEVECPWHGSKFDVRTGEVTNPPASEPEPTYEVKVDGNNIL
                     IRKRIQTTPQKPQFELTLLEKQKVEGTDVMSFRFSKTLLQYKAGQYAYFDIGGVYNDP
                     KGPIRHFTIASSPTEDFILISTRIRSSPYKKSLSSLEPGVKVNARGPEGKFVLHEDYS
                     KSAIFLSGGIGVTPFRSMIKYATDKQLPLRIIMFDSNRNQENILFKKEFDECSNINKN
                     VKIIYTITDEAQNQSGTNNWQGEKGRIDKAMLARYLSDSQQKTSVFYICGPPAMIKAM
                     QELLQDLEIASDRIMVEEFTGY"
     gene            complement(3180..3413)
                     /locus_tag="VFI64_02770"
     CDS             complement(3180..3413)
                     /locus_tag="VFI64_02770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242241.1"
                     /translation="MDAYLEEELYDLLVYCIQNRDNASDVESKKRIEDWKRAEFRWRS
                     WCYGEYILLNRVQNKRRNWKGCKTISFMVEQHN"
     gene            complement(3561..4052)
                     /locus_tag="VFI64_02775"
     CDS             complement(3561..4052)
                     /locus_tag="VFI64_02775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242242.1"
                     /translation="MKITEDVVGQYIISNEYVKPRIEIGHYYLEWNDKSYGIYQKEMS
                     ELKGFLISVIPYFDAIYQMLHSLERPRGKKKYGLDKQLFPDIHVSHNNQGHLIRYDLY
                     MISDGSTFIDRTEKLEVVNEGGESSKKVNVRPKNHVDSGLSLEWKLGQLLFNKQGIIG
                     VKD"
BASE COUNT         1354 a          787 c          697 g         1427 t
ORIGIN      
        1 actagatgtg tttgtgtctt ctctaatcct ctgtatagtt gtctgacgct tatcgacata
       61 ctaaaaatca acatcaatct attaataacc actatgtagt tagtctgctt agtaagatga
      121 gcaagctgag tagttttata acttctagca cgcccctcag ggttcatgtt tctcctgtcg
      181 gatttgaagt cgacagaatc attttgccag caattaagat gaaggcagat agaatttggt
      241 taatcatcca taacaacccg tcggaggatg aaggaattca ttttctccat tccgtgaaag
      301 ataaacttgg acaaaataaa attgaattca gagaagaaag agcagataga accgatcttt
      361 ttgatacatt gcgtgcattt agaactgtac tccttaggga aaatggaaat aatataatgg
      421 taaacgtatc agcgggaagt aaaattcaag cgatagcttc tatgctggca tgtatgatgt
      481 ttaagagtac gttcaatgtc aaaccatatt atgttactcc tgaaaaatat accactccta
      541 aagtccaaca aacacaaggg atgaaggaca tattaccttt accagaatat gagatagaaa
      601 tccctagtca aaaattagtt agatgcattt ctattatcgc tagtcaaaga aatgggacaa
      661 ttactaaaaa ggggttaaga gatcttgctt taaaagaaaa cttgatccat gtagagacag
      721 agaaaaacga taaaaacaaa gaactcgcag cctatatgtc cctgaataaa aatctaatac
      781 aaccgttgat gaagcggaac ttcattaatg ttgagaaagt aggtggagct cacaaaataa
      841 ctttgactct ggaaggcaaa aatgccctga agtttttgag gcagaattaa tccttgtcga
      901 tttaaggttt gttcggacac tcagtgcttt ttgttaatcc agacggctta attaataatc
      961 gtgttcaaac tttaaatcaa tgtttaatgc aatattatta aatgacaacc tttgaattta
     1021 cgaaaagatc gtctagtact atcatggaca tcgtattacg tattaataat aaataaatta
     1081 tgatttatgg ttatgagtaa attatgggta aagaagataa aatacctgtt agacttgaaa
     1141 agatagaaga aattagatca gtctggagca atcccgaatt taagactaat agggaaaaat
     1201 tgattcaatt atttaaagac tgtaaaaaag ttcaagaggg atacacaaca cgagaatttg
     1261 caaacgctat atttcccgaa aagatgatca ccctatcaga tcaagaagaa tccaatcatg
     1321 tcgatactgt gacaaaatat ttagaaagaa tgttaaaaac atttggtcaa gatgtgacca
     1381 atcatagaat agttttatca tctaaatatg tggacggtgt ttactactat tacaacatgg
     1441 ttgaggatag cacagctcgt gatctagtaa agggtgcgaa aacgtatcta gggatagaga
     1501 aaaaaatcaa tcagagtttc gaaacattcg agagacgaaa acctaataaa taataattaa
     1561 tcgtatttga catattatta taatctaaag gtcattttca ccatcgccaa tattatttgg
     1621 ctgtccctac taaattgctc ccgaagaaca catataacag aatactactc cagtcgtagg
     1681 atcttcttgt cctggagtaa cagatctata atcataccca gactcagatt ccttaagaat
     1741 cctttcagct cgtatgggtt ttccacactt agcacatgga atactttcta cattttcaat
     1801 agtcttccaa atgctactta tacaagattt gcacaaacgg acatttatgg taccattaag
     1861 agtatcatta acaaactcta cttgaatata agaaccttgg ccgcatagat tacactgcct
     1921 gtactcgttt gttatattga ttttcatttg tcaggctaat accctgtaaa ctcttccacc
     1981 attattcggt cactagcgat ctcgagatcc tgtagcaact cttgcatggc ttttatcatt
     2041 gctggtggtc cgcaaatata aaatactgag gtcttttgtt ggctatcact aagatatctt
     2101 gccaacattg ctttgtcaat tcttcccttt tccccttgcc aattattagt gccagattga
     2161 ttttgtgctt cgtctgtaat tgtgtagatg attttcacat tcttatttat gtttgaacat
     2221 tcatcaaatt cttttttgaa taatatgttt tcttgatttc tatttgaatc aaacattata
     2281 attctcaaag gtaattgctt gtctgtagca tactttatca tgctcctaaa tggagtcaca
     2341 ccaatacctc cagaaagaaa tatggcagat tttgaatagt cttcatgtaa aacaaatttt
     2401 ccttctggtc ctcttgcatt aactttgaca ccgggttcca gtgatgagag gcttttttta
     2461 taaggtgagc ttctaatcct tgtactgatc aagataaaat cttcagttgg agacgaagcg
     2521 attgtaaaat gcctaattgg accctttgga tcattgtata ctccgcctat atcaaaatat
     2581 gcgtactgtc ctgctttata ttgaagcaaa gttttgctaa acctaaacga cataacatca
     2641 gtgccttcaa ccttttgctt ctctagtaat gtaagctcaa attgaggttt ctgtggagtg
     2701 gtctgaattc gtttcctgat taatatatta ttgccatcta ctttcacttc ataagttggt
     2761 tcaggttcgc ttgcaggagg attagttacc tctcctgtcc tcacgtcaaa ttttgaccca
     2821 tgccaaggac actcaacttc atatccttca agcttcccat cagccaatgg accaccctca
     2881 tgtgtgcata tattattaat tgcatagtat tttccatcaa cattcactag gcatacctct
     2941 tcaccattaa tttgaaacat tttcatttgt aacggttgaa tgtcttttat gtgtgcaatc
     3001 ttgacaaaat cctctttatt agccaatgga cagaccaatt gggacttaga gtttgaagcc
     3061 tatatgtctt taattctaga tccggcgaat tgctaagtat agaagcataa aaatagccca
     3121 aacttttcaa atcattctga aagagggatt ctgaatctaa tgattaataa ttccgttcat
     3181 cagttatgct gttccaccat gaacgatatg gttttgcatc ctttccaatt tcgtctttta
     3241 ttctgaactc gattgagtaa aatatattct ccatagcacc agctccgcca tctaaattca
     3301 gctcttttcc aatcttctat tctctttttt gattcaacgt ctgaagcatt atcacgattt
     3361 tgtatacaat aaacaagcag gtcgtagagt tcctcttcta gatatgcatc caagtttact
     3421 tcaccttttt cattatcatg atctttaata tatgataacc attaggaata tgttttttat
     3481 ttaccaattt ggaaacgata aatctgcctt gatatatcct tagaccattt actgctttca
     3541 tccgattccg agtagaacgt ttagtcctta actccaataa taccttgttt attaaaaagc
     3601 agttggccca gtttccattc taaggaaagc cctgaatcaa catgattctt tggcctaaca
     3661 tttacttttt ttgacgactc tccaccctca ttcacaactt caagcttttc tgttctatca
     3721 atgaatgtag aaccatctga tatcatgtat aaatcgtacc taattaaatg cccttgatta
     3781 ttatgcgaaa catgtatatc tggaaataat tgtttatcaa gcccatattt ttttttgcct
     3841 cttggtctct ctaagctgtg tagcatttga taaattgcat caaaatatgg aataacgctt
     3901 attaggaatc ctttcagttc agacatctct ttttgatata ttccgtaaga tttatcattc
     3961 cattctaaat agtaatggcc gatttctatt cttggtttca catattcatt agatataata
     4021 tactggccta ctacatcttc tgtaatcttc aagatgtctg taaatgtttt ccagacaaat
     4081 aaactctata tctcataaat gcagaactag ttaattgttg ttgttgaggc tagggacttc
     4141 tattcgagtg ttgaataagt agtttttatc cataagttct ttaatcgtgt gaacatgtag
     4201 ttagaatatt ggaaaacaaa gttgccatag tcacgggagc aagtagtggt ataggataca
     4261 ctacc
//
LOCUS       DASSIK010000149         2234 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1408055, whole genome shotgun sequence.
ACCESSION   DASSIK010000149 DASSIK010000000
VERSION     DASSIK010000149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2234)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2234)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2234
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1408055"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1219)
                     /locus_tag="VFI64_02780"
     CDS             complement(<1..1219)
                     /locus_tag="VFI64_02780"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HET7242243.1"
                     /translation="MSEPLFERAKLRIPGGVNSPVRSYDPYPLFISSGKGSKIVTCDH
                     DTLLDYCMGYGAVLLGHAYAEIIDLIKLQLDKGTLYCMPTEQEVELAELLCKTIPNTE
                     MVRIMNTGSEATMHAIRLARSFTSKKKIVKFDGGYHGSYDDVLVNAGSGATESSPVED
                     NLFESAKNTLVIPYNDLTALEELVKIHSDIACLIVEPILANMGLIIPKQDFLNRIRRI
                     TEENGILLIFDEIVTGFRLSIGGASEYFGIRPDISTFGKAVGNGFPLSAVSGRKAILE
                     QFYPKGLVYQGSTYAGNPISVTAGIATIQKLSKAKNDIYPRITRLCDSLVNGIRDQLE
                     DSGLNYQLNHIGSMFQIFFTDRRVENAGDARRSNRGLYKKVFDQLVRSGVFVPPSQYE
                     TCFISYGHNEEDID"
     gene            complement(1276..>2234)
                     /gene="hemB"
                     /locus_tag="VFI64_02785"
     CDS             complement(1276..>2234)
                     /gene="hemB"
                     /locus_tag="VFI64_02785"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004655 - porphobilinogen synthase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HET7242244.1"
                     /translation="LRRLRRTSSIRKLVQETRLSVNDLVSPLFIQEGLKEPHEVESMP
                     GIFRLPPGHVLKNIESLYELGLRAFLLFGLPTAKDSNGSSAFHDDGVVQRSVELLRKN
                     FSDKIVLISDVCLCQYTTSGQCGIIHNGLVDNDKSLKILGKIAVSHANSGVDFVAPSA
                     MMDGQVRVIRQSLDAANLMNVGIMGYSAKLSSNLYAPFRDAAHSLPSQGDRKSYQMAY
                     ANSKEAMQEIRLDSQEGADIIMVKPALPYLDLIYRAKMSTLLPVCAYSVSGEYAMVKA
                     AASEGFINEDEVVSEFTTCIKRAGADIIITYHAKKLAELLLE"
BASE COUNT          661 a          490 c          386 g          697 t
ORIGIN      
        1 aatcaatatc ttcttcatta tggccatatg aaataaaaca agtctcatat tgtgaaggtg
       61 gaacgaagac ccccgatctc actagttgat cgaagacctt tttgtaaagt cctctgttgc
      121 tccttcttgc gtcacccgca ttttcaactc tcctatcagt aaagaaaatc tgaaacatag
      181 acccaatatg gttaagctga taattgagac cagaatcttc aagctgatct ctaatcccat
      241 ttaccaaaga atcacaaagt ctggttatcc ttggataaat atcatttttt gccttggata
      301 atttttgaat tgtagctatg ccagcggtaa cagagatagg attcccagcg tacgtacttc
      361 cctgatatac taatcctttg ggatagaact gttctaatat ggcctttctt cccgatactg
      421 cagaaagtgg aaatccattt ccaactgctt tgccaaaggt agaaatgtca ggcctgattc
      481 caaagtattc tgatgctccc ccaatgctta atctaaatcc tgttactatt tcatcaaata
      541 ttaagagaat gccgttttct tcagtgattc ttcgtatcct gttaaggaaa tcttgttttg
      601 gaataatgag acccatattc gcaagaatcg gctcaactat caaacaagcg atgtctgaat
      661 gaatcttcac cagctcttct aacgcggtta aatcattata tggaattact aaggtatttt
      721 tggcagattc gaatagatta tcttccactg gcgaagattc tgtcgcacct gatcctgcat
      781 ttactagaac atcatcataa gatccatgat agcctccatc aaatttaaca atcttcttct
      841 ttgaagtaaa tgatctagct aatctaattg catgcattgt tgcttctgag cccgtgttca
      901 ttattctcac catttccgtg tttgggatcg ttttacataa caattctgct aactctactt
      961 cttgttctgt aggcatacaa taaagagtgc ctttatccaa ttgaagtttg atcaaatcaa
     1021 taatttcagc ataagcatga cctaatagta ctgcaccata acccatgcaa taatccagta
     1081 acgtatcgtg atcacatgtt actattttgg atcctttgcc cgaggaaata aataaaggat
     1141 agggatcgta agaacgaact ggactattaa ccccgcctgg aattcttagt tttgctcgtt
     1201 cgaataaggg ttctgacaaa cttacttcat attaattctg caaactgtta taatcgtatc
     1261 gaggtaagag acgtgctact ctaacagcaa ttcagccaat ttttttgcat gataagttat
     1321 gattatatcg gctcccgctc ttttaataca tgtggtaaat tcacttacaa cttcatcctc
     1381 attaataaaa ccctccgaag cggcggcctt taccatagca tactctcctg aaacgctgta
     1441 cgcacatacc ggcaatagag ttgacatttt tgccctatat atcaaatcta gataagggag
     1501 agcaggttta accattatta tatcagcccc ctcctgtgaa tccagtctaa tttcttgcat
     1561 agcctctttt gaattagcgt atgccatttg ataggatttt ctatctccct gagagggcaa
     1621 ggaatgtgct gcatccctaa atggagcata aagattagaa gagagctttg ccgagtaccc
     1681 cattattcca acgttcatta agttcgcggc atcaagtgat tgacgaatga ctcgtacttg
     1741 gccatccatc attgccgaag gggctacaaa atcaacacct gaattagcat gacttaccgc
     1801 gatttttccc agtatcttca aactcttatc attatcaacc aggccattgt gtataatgcc
     1861 acattgccca ctggtagtgt attggcaaag acaaacatca ctaatcagaa caattttatc
     1921 agaaaaattt tttcgcagca attcaactga acgttgtaca acgccatcat catgaaaagc
     1981 tgaactacca ttactgtctt tagctgtggg tagaccgaag agcaggaatg cccttagacc
     2041 cagttcgtaa agagattcaa tattttttag cacatggccg gggggcaatc taaaaattcc
     2101 tggcattgat tctacttcat gtggttcttt cagcccctcc tgaataaaca gtggactgac
     2161 caaatcgttt acagataaac gggtttcctg aactagtttt cttatagaag aagttcttct
     2221 caatcgtctg agcc
//
LOCUS       DASSIK010000150         2297 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1332153, whole genome shotgun sequence.
ACCESSION   DASSIK010000150 DASSIK010000000
VERSION     DASSIK010000150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2297)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2297)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2297
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1332153"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            235..756
                     /locus_tag="VFI64_02790"
     CDS             235..756
                     /locus_tag="VFI64_02790"
                     /inference="COORDINATES: protein motif:HMM:NF012436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin"
                     /protein_id="HET7242245.1"
                     /translation="MEKAINDQIAYEALATYAYVAIGSWCERTGFEGGAVFFFEQATE
                     ENTHLLKFIHYLNGAGAEAIIPEIAKPQGAFNTLESTLQAGLKSEQTVTKLINNLVEI
                     AEKEKDRATYSFLQWFVNEQVEEETLFETILQKFEILGRDKLAVYQIDQSLATIRSKN
                     ITTQADQGQATAN"
     gene            complement(932..1759)
                     /locus_tag="VFI64_02795"
     CDS             complement(932..1759)
                     /locus_tag="VFI64_02795"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HET7242246.1"
                     /translation="MKVIRDMPAGMQGGDYSPIVQLPPISNTSTVAIVGDIDITNDTK
                     KVITKMKQNSQVIFLNGDFSYSEDEHDTRQWFSSLFTNYNGRIFGSLGNHDLGLSEVY
                     KELFQQTQWTFSIDIGNVHFLILNTQRWSSGASTSQNEIISDLEQSIQRGMKFLIVLQ
                     HVALKGHVKIKSKYYYVKIPTWEDAYKVKKVELIISGHVHNYQRFPKNTDGNIYLTVG
                     TGGAQPTVLQSTSGLSKYFKNKYGYLMIENIGQASINARFYDKKASQLDSVIIGSNR"
     gene            complement(2040..>2297)
                     /locus_tag="VFI64_02800"
     CDS             complement(2040..>2297)
                     /locus_tag="VFI64_02800"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HET7242247.1"
                     /translation="NWIKLFGLNLIPDKRKIIPYSIQTLKKRKPNWFLEDLKILLNLL
                     KQEKIKPIVAARMQLNEAAQAHELLKTGSVTGKIVLICNSE"
BASE COUNT          754 a          424 c          410 g          709 t
ORIGIN      
        1 aaacgcaaga atgcaagtct tctctccggt gaatggcaca tcctaataat gaacttggaa
       61 acatcatgac gatctaaatg atgtcatgac ttgttgaggc acaagaaatt tatacataca
      121 aaacttattt ttgcgtcttt aacgattaat accacagtat ttctaaaact caatcacaaa
      181 aaatatagat acccgaaaaa tactaagata gttgcaatga gaatttcatc acaaatggaa
      241 aaagcaatca atgatcaaat tgcttatgaa gcattagcta cctatgcgta tgttgctatt
      301 ggctcatggt gtgaaagaac tggatttgag ggtggtgcag tattcttttt cgaacaagct
      361 actgaagaaa atacgcactt gctaaagttc attcattatc ttaatggtgc tggagcggaa
      421 gcgataattc cagaaatagc aaaacctcaa ggcgcgttca atacactaga atctacccta
      481 caagctggtc taaaaagtga acaaactgtt acaaagctca ttaacaattt agtagaaatt
      541 gctgaaaaag aaaaagaccg tgctacatac tccttcttac aatggtttgt aaatgaacaa
      601 gtagaagaag agaccttatt tgaaacaatt cttcaaaagt tcgagatact tggaagagac
      661 aaattagcag tatatcaaat cgatcaatcc ttagccacga ttagatctaa gaatataact
      721 acacaagcag atcaaggaca agctacagct aactagttag tataagattc cttcactctt
      781 ttcccattca taaattgata tgtgacatga agttgaactt ctctactcta attagtgagg
      841 tcaataatga tgaggacagt ggtttgtgaa tcaaatttga gttatttatt tggataaaga
      901 aatatgaagt agcgccgcca ccaaaaccaa actatctgtt ggaaccaata ataactgaat
      961 ctaattgact tgccttcttg tcataaaagc gtgcgtttat tgaagcttga ccaatatttt
     1021 ctatcatcaa atatccatat ttgtttttaa agtattttga taaacccgat gtggattgaa
     1081 gcactgtcgg ttgtgcacct ccagttccta ccgttagata gatgttaccg tcagtatttt
     1141 ttgggaaccg ctgataatta tgcacatgac cagatataat gagctcgact tttttaacct
     1201 tgtacgcatc ttcccaagtt ggtatcttga cgtaatagta tttacttttg atctttacat
     1261 gccctttcaa cgctacgtgc tgtaaaacaa tcagaaattt cattcccctt tgtatcgatt
     1321 gctccaaatc cgatataatc tcattttgag aagtagatgc acccgagctc cagcgctggg
     1381 tatttaatat caggaagtga acatttccaa tatctatcga aaaagtccac tgcgtttgtt
     1441 gaaacaattc tttatagacc tcgctcagac ccaagtcgtg atttcctaac gaaccaaata
     1501 ttctgccatt gtaatttgta aataatgagg aaaaccattg tctagtatca tgctcatcct
     1561 cagagtacga gaaatcacca ttaagaaaaa ttacttggga attttgcttc attttagtaa
     1621 taactttctt ggtatcatta gtgatatcaa tatcgcctac tatcgcaact gtgctagtat
     1681 tggagattgg aggaagctga acaatgggcg aataatcccc cccttgcatt cctgctggca
     1741 tatcacgaat taccttcact atattataac tatattgtat aattcctggt agtagtaatg
     1801 gcttacaagc taatataatg ttgaacataa tctgggaaca agcttaaatg atgtaatgtt
     1861 tgtctgggct ccgtggaatt agtaacgata taaacagtcg ttaagttttt gagccagaag
     1921 agggataaat ggcattatca tgctccaaat atccagggga caggcctaat tatctactag
     1981 cgaaagggaa actagtcatg attgaggggg tcttaaaaag cctaaagaat ttaagaactt
     2041 tattcggaat tgcaaatcaa gactatttta cctgtgaccg accccgtttt aagtagttcg
     2101 tgagcttggg ctgcctcatt caattgcatt cgagcagcaa caatgggctt aatcttctcc
     2161 tgcttcagca aatttaataa tatcttcaag tcttcaagaa accaattggg cttgcgtttt
     2221 ttcaatgttt gaatgctgta aggaataatc tttctcttgt cgggtatcaa gtttaaacca
     2281 aacagtttta tccagtt
//
LOCUS       DASSIK010000151         3203 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1332248, whole genome shotgun sequence.
ACCESSION   DASSIK010000151 DASSIK010000000
VERSION     DASSIK010000151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3203)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3203)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3203
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1332248"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..139
                     /locus_tag="VFI64_02805"
     CDS             <1..139
                     /locus_tag="VFI64_02805"
                     /inference="COORDINATES: protein motif:HMM:NF004424.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HET7242248.1"
                     /translation="LPHGKGTRWCRRCGCFSGLIQAYNLMLCRQCFREVAEKLGFQKY
                     E"
     gene            169..561
                     /locus_tag="VFI64_02810"
     CDS             169..561
                     /locus_tag="VFI64_02810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018003458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HET7242249.1"
                     /translation="MPALNVLSNLFTTIYNNESRRKKECIVSPSSIFASEILRVMQKE
                     RYIGEFEQIDDNRHGKFRIQLLAKINKCGIITPRFSVRKGEYLNWERQFLPAYNMGVL
                     LVSTSKGIMTHHEAQEQGLGGVLVGYVY"
     gene            551..1105
                     /locus_tag="VFI64_02815"
     CDS             551..1105
                     /locus_tag="VFI64_02815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HET7242250.1"
                     /translation="MSTDNKEQEAIVTNVGVREGVSITKTEKILSVKGKLGTVTKDFT
                     RLPATLSIEDNNVCIKPYGKRKKDLAIANTAKSIITNMMKGVEEGYEYKLKIVYAHFP
                     ITVKVKDNAVYVENFFGERSARISHIRGNSTKVTVQGDDVIVTGPNLEEVSQTAANIE
                     SSTKIKKKDLRVFLDGVYIYSRGE"
     gene            1215..1895
                     /locus_tag="VFI64_02820"
     CDS             1215..1895
                     /locus_tag="VFI64_02820"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HET7242251.1"
                     /translation="MKAVILAGGMGKRLRPLTDDRPKAMIEIQSVPIIERQIRWLSKL
                     GIKEIIVCVGHLKERIIAHLNDGQEYDVVVKYVAEKEPLGTGGALRNAKKSIVANSQD
                     KGFFVINGDILTDINPLTLIDLGSNSIALVNLRSTFGIVETVDNIVSHFVEKPAIHDK
                     WINAGIYYFSADVFQYLPEIGNFEITALPSLAKERKLKALKYPNNYWRSIDSHKDVEE
                     ATEELAQK"
     gene            1974..2915
                     /locus_tag="VFI64_02825"
     CDS             1974..2915
                     /locus_tag="VFI64_02825"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HET7242252.1"
                     /translation="MIKFARAADHFVKADSIWMPESWGREAFVMLGAISQVTNRIKLG
                     TSIISIFARSPATTSMAASTLDTISSNRVIIGIGASTPVLAQNWHGIEFCEPLKRMQE
                     FAESFTRIVSGDQVNYDGKFFRIHNFRIMNVSTRKRIPMFFGAVNSGMVNLATKIADG
                     VILYLHPLHRLTDTVRGINSNIGKYKKPFEICSVFITAISEQYPEIARQRAAKTLAFY
                     TAVGKYYSKFLAENGFQSEVSAITEEYKKNGIDQASNCVSEKMLRSLAIYGDKDDCVR
                     SLRQFMATGITLPILQVNPVGNPEDSINESLLLSNLV"
     gene            2908..>3203
                     /locus_tag="VFI64_02830"
     CDS             2908..>3203
                     /locus_tag="VFI64_02830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242253.1"
                     /translation="MSDVAIVSHKSGKFRKKSSLPLMELACEPCIEILREFPQFRDKI
                     DCVLFSTTSQVQYSSAILSEYLGITPKISQRIDNLCNSGTHAIISAYSLIRSGL"
BASE COUNT         1082 a          557 c          681 g          883 t
ORIGIN      
        1 acttcctcat ggaaaaggca ctcgctggtg tagaagatgt ggctgttttt ctggtcttat
       61 acaagcgtat aatttgatgt tgtgtcgaca gtgttttaga gaagtagcag aaaaattggg
      121 gtttcaaaag tatgaatgaa aaaataacag gggtctgtgg aatatagtat gccagcgcta
      181 aacgtactct ccaatctctt tactacaata tataataacg agtctagaag aaagaaagag
      241 tgtatagtta gcccatcatc catatttgct agcgagattc tccgtgtaat gcaaaaggaa
      301 agatacattg gagaatttga gcaaattgat gataacaggc acggaaaatt tcgaattcaa
      361 cttctagcaa aaataaataa gtgtggaatt atcacaccca ggttcagtgt aagaaaagga
      421 gaatatctta attgggaaag acagtttttg cctgcctata acatgggtgt actgttggta
      481 tccactagta aaggcattat gactcaccat gaagcacagg aacagggact aggaggtgtc
      541 ttggtaggat atgtctactg acaacaaaga acaagaagcg attgtcacta atgtaggagt
      601 acgagaaggc gtatcaatta caaaaacaga aaagattctc tctgtaaagg gtaagcttgg
      661 tactgtgacc aaggatttta ccaggcttcc tgcaactctg tcgattgaag acaataatgt
      721 atgcataaaa ccctacggga aaagaaagaa agaccttgcg atagcaaata ctgcaaagag
      781 cattattaca aacatgatga agggagtgga ggaaggctac gagtataaat tgaagatagt
      841 ttatgctcat tttcccatta ccgttaaagt taaagataat gcagtgtatg tcgaaaactt
      901 ttttggggaa cgttcagccc gaatttcaca tattcgaggc aattcaacta aagtaactgt
      961 gcaaggtgac gacgtcatag taacaggacc taatttagag gaagtatctc agacagcagc
     1021 taacatagag tcctccacca agataaaaaa gaaagatcta agagtattcc tcgatggtgt
     1081 atatatttac tctcgtggcg aataatgtgt ataattatca attcagtgag cttagttcac
     1141 tattttgaat tatgatcata cttgaactac cctattcgga taatttttat ataaatcggt
     1201 gagacgacta tccattgaag gctgtaatcc tggctggagg aatgggaaaa cgactaagac
     1261 ctctgacaga tgatcgccca aaggcaatga tagaaattca aagtgtgcct ataatagaaa
     1321 gacagatcag atggctttct aaattgggaa taaaggaaat cattgtttgt gtaggccatc
     1381 tcaaggagag gataattgca cacctgaatg acggtcaaga atatgacgtg gtggtgaagt
     1441 acgtggcaga aaaagaacct ctcggtacgg gaggagcatt gaggaatgca aaaaaaagca
     1501 tagttgcaaa ctcacaggat aagggcttct tcgtaattaa cggagatatc ttgactgaca
     1561 ttaatcctct aactttaatc gatcttggaa gcaattctat agctttggtt aaccttcgaa
     1621 gtacgtttgg tatagtcgaa actgtcgaca atattgtttc ccactttgtg gaaaaaccgg
     1681 ccatacatga caaatggata aatgcaggaa tatactattt ttctgccgat gttttccagt
     1741 atcttccaga aatcggcaat tttgaaatta ctgccttacc ttctctcgca aaagagagga
     1801 agttaaaagc tctaaagtat ccaaataatt attggcgttc tattgactca cataaagatg
     1861 ttgaagaagc gacagaagaa ttggctcaaa agtaaaaaca aacaaacaaa ccaatgaatt
     1921 gtgaaaagac ccgaatcggt tacaatccaa gtagtctctt tgggagtctt gatgtgatta
     1981 aatttgcaag agcagctgac cattttgtaa aggcagattc tatctggatg cctgaatcat
     2041 gggggaggga agcattcgtt atgttgggtg ccatttctca agtaacaaat agaataaaac
     2101 ttgggacttc cataataagc attttcgcaa ggtctcctgc tacaacatca atggctgctt
     2161 ccaccttaga taccatctcg tctaaccgtg tgataattgg tatcggtgcg agtactccag
     2221 tgttagctca gaattggcac gggatagaat tttgcgagcc actgaaacga atgcaagaat
     2281 ttgccgaaag cttcacgagg attgtaagtg gcgatcaagt aaattatgat ggcaaattct
     2341 ttagaattca taactttaga atcatgaatg tatcaaccag aaagagaata cctatgtttt
     2401 ttggcgcagt aaacagtggg atggtcaatc tagccacgaa aattgcagac ggtgttatac
     2461 tatacttgca tccattgcac aggctaacag atactgtccg aggcatcaat tccaatattg
     2521 gaaagtataa gaagcctttc gaaatatgtt ctgtctttat tactgcaata tcagaacaat
     2581 atcccgagat tgctaggcag cgagcggcaa agacccttgc attctatact gccgtaggaa
     2641 aatattacag caaatttctg gcagaaaacg gattccaaag cgaagtgagt gcaataactg
     2701 aagagtacaa gaaaaatggt attgaccaag cttcaaattg tgtatctgaa aaaatgttaa
     2761 gatctcttgc aatttatggt gacaaagatg attgtgtaag atcactacga caattcatgg
     2821 ctacgggcat tactctacca atactgcaag tcaatcctgt gggaaatcca gaagattcga
     2881 tcaacgaatc cctattacta tccaaccttg tctgatgtag caatagtttc tcataaaagt
     2941 ggaaaattta ggaaaaagtc atcacttcca ttgatggagt tggcatgtga accatgcata
     3001 gaaatcttgc gggaatttcc tcaattcagg gacaaaatag attgtgtact tttttcaact
     3061 acctctcagg tacagtatag ttctgctatc ctgtctgaat atcttggtat aacgccaaaa
     3121 atatcgcaga gaattgataa tctttgcaat tctggaactc atgctataat ctcggcttat
     3181 tcactcatca gatcaggatt atg
//
LOCUS       DASSIK010000152         3631 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_823001, whole genome shotgun sequence.
ACCESSION   DASSIK010000152 DASSIK010000000
VERSION     DASSIK010000152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3631)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3631)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3631
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_823001"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..282)
                     /locus_tag="VFI64_02835"
     CDS             complement(<1..282)
                     /locus_tag="VFI64_02835"
                     /inference="COORDINATES: protein motif:HMM:NF025825.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HET7242254.1"
                     /translation="MDKNQGTFVTDITNKDELNEIEKIKNMLNPNEKVLLVARQSRFL
                     PGGSALTPNVVIATDRRIIIRYPYDLGIRSEIVDIPYDVITSIKLMKGVL"
     gene            complement(615..1811)
                     /locus_tag="VFI64_02840"
     CDS             complement(615..1811)
                     /locus_tag="VFI64_02840"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HET7242255.1"
                     /translation="MNRRSAISSGTISLLIARIIYAINWFNIGSLFPFISKEFNQDVS
                     YLGQLSGFFLLGIGLFQIPGGLFATKFGSRRSAILGILLSSIAVIISSLTTQIAVFVI
                     LRFIVGLGMAFFFSAGVTLITTYLGKQSEGTGIGLLNSFQAIGGIIGIFGWILVAEVL
                     GWRLSLIMSGILGVAIGLTMIFLLPVETQVRTTISISLLRKLLFSRYLVSLGVILTAT
                     QLAWGLTVSFFVFYLIDRMKISPEFAGIISSIPLIVYVFTSPITGKIYDKSNNSKWLL
                     LIFSIMLGISIMMNSIDNLTAVILSAIFVGFFVTGGFTIIYTITRKIESTTLTQGQEY
                     ATLNVSWINGISLMGISWVPVVFSLIINQAGYSIAWLIGGAITLILTIPILALSSRVF
                     EKTRIN"
     gene            2721..3356
                     /locus_tag="VFI64_02845"
     CDS             2721..3356
                     /locus_tag="VFI64_02845"
                     /inference="COORDINATES: protein motif:HMM:NF039195.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PsbP-related protein"
                     /protein_id="HET7242256.1"
                     /translation="MTVKCNATRLHELNRDFYRPLVISIVISIILCVSIRNSESEFAF
                     GSQYDKLLIYTSVSESEFLTYDDLITGFSIKYPPDWDRAQHIDKSITFTAPKESNSNT
                     IPAGLGIIFKEVASNVSLSYISQTQLNTLKNLYPDINILESSDITFAGHPAHKIIFTA
                     TDSTLHLRKAMQIWFKDDTKKYLILYKADVEKFPQYLPTIEQMLNTFYTSK"
     gene            3403..>3631
                     /locus_tag="VFI64_02850"
     CDS             3403..>3631
                     /locus_tag="VFI64_02850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase/quinone reductase family protein"
                     /protein_id="HET7242257.1"
                     /translation="MSKADLYQRLDKVNEIRLSVKGRKSGREISRPVWFVHEGNTLYL
                     LPVQGSDTNWYKNLLVDPMLKISVNGVEIPAR"
BASE COUNT         1171 a          677 c          651 g         1132 t
ORIGIN      
        1 cagaacaccc ttcattaatt tgatactagt tatgacgtca taaggaatat caacaatttc
       61 agatctgatt cctaagtcat aggggtacct aattatgata cgccggtccg ttgcaattac
      121 tacgttgggc gttagagcag accctccagg aagaaatcta gactgtcgtg ctaccagtaa
      181 tactttttca ttaggattaa gcatattttt aattttctca atttcgttta attcatcctt
      241 gtttgttata tcagtaacga aagtaccttg attcttatcc actcctaatc agttattaat
      301 gcggctttgt ctatatttat attagatggt agataactta ccttaaacat acctcaatcc
      361 ttttctctaa ctccgtattt caaattggcg aagaacgaga caaacttttg aacattggat
      421 gagtattcac acgaaattat agatggtaaa tgatcatgtt tgagataaaa acactatgga
      481 atgcctactg attgtacacg ctgtataaac ataataaacc ttcgaatatt gtcatattaa
      541 gttcctgaat gttctttgaa aacaaacctg attcgatttt ttgtatatgc taatactaaa
      601 agtagtatca catattaatt aatccgggtt ttttcgaaga ccctcgagct taatgccagt
      661 atcgggatag ttaggattaa agttattgcg cctcctatta accaggcgat tgaatatcct
      721 gcttgattta ttatcagaga aaacactact ggaacccatg atattcccat taacgatatc
      781 ccatttatcc agctgacatt caatgttgcg tattcctgtc cttgagttag agtggtactc
      841 tcaatctttc ttgttatagt atatattata gtaaaacctc cagtaacaaa gaatcccacg
      901 aatatcgccg agagtattac cgcagtcaag ttatcaatgc tattcatcat tatgctaata
      961 cccagcataa tactaaatat tagtagcagc cattttgaat tattgctctt atcatatatc
     1021 tttcctgtta ttggtgatgt aaatacatat acaatcagag ggatgctgct tattattcct
     1081 gcaaattcgg ggcttatttt catcctatca atcaaataaa agacaaaaaa tgaaacggtt
     1141 agtccccaag ctaattgagt tgcagtcaag attacaccta gagagactaa gtagcgagaa
     1201 aaaagtaact tacggagcag tgatatcgaa atagttgtcc ggacttgtgt ttcaacaggt
     1261 aagagaaaaa tcatcgttaa gcctatggca actcccaata tcccgctcat aattagactg
     1321 agtctccaac ccaatacttc agcgacaaga atccagccaa aaatacctat tattcctcca
     1381 attgcctgaa atgaatttag aagtcctata ccggtacctt ctgactgctt tccaagatag
     1441 gtagtaataa gagtaacacc agcactaaag aagaaagcca tacccagtcc cactatgaat
     1501 cttagaataa caaagacagc aatttgtgta gtgagtgatg atatgattac agcaatggaa
     1561 gacaagagaa ttcccaatat cgcacttctt cgtgagccaa atttggtagc aaaaagacca
     1621 cctggaattt ggaagagtcc tatgccaagt aagaaaaagc cactgagttg gccaagatag
     1681 gaaacatctt gattaaactc ttttgaaata aatgggaaca gggagccaat attgaaccaa
     1741 tttattgcat agattatcct tgcgatcaat agggatattg tgccacttga aatagctgat
     1801 cgtctattca tttatgagtc gtccacaaac actaactaac tttacctctt tgataactct
     1861 catacgtctc cattcgaaat aaggctacta tcgaagttat tatcatagtg catccgattg
     1921 acgaacaatt tgatgagtat caatgacatt ccgtttgcgt gcttgctgta ttctttgctg
     1981 gttgtgatgg ataatcagat tctcacgatg aaattttcct ttgaccagaa tttcatgcat
     2041 cgtacgctct aagatgagat agctatattt ctaagcttgg ttgcaagttt tcaacatagt
     2101 ttagtcagac ttatgaaatg gtttgacttg ttgtcgataa tcgctttaaa tgatgttgtc
     2161 tatctaatat ctataggttg ttcgggtttc ggctccgttc accgaacaca atgatagagg
     2221 ggaaagccaa acacggagct ggctgactcc cttatccgta cactaaagtt ggaacatcta
     2281 cagtaaactt ggctacagat ccgtattaga ctgatactgt gctagctcat ctaagtattc
     2341 aatgcggctg tttgcgactg aactaatttg aaagaattga ttatatcgtc tatgagtggg
     2401 gcataatcag aatattttga tgatttcatt ccaaaagtaa gtatgtaggc gttatcccca
     2461 ctagtggtcc agacttgtaa atttttaatc ttgattggtc cttcttgagt attaatcaca
     2521 taactatagt ctattttgta cgcgggatat ccagataatg atgcgttggc atctaagtgt
     2581 tctagttgag aaggaggaaa ttagcagtca gaatcgctac aataagcgct cctattggca
     2641 ctataatcca aatatttgaa cgtacagata ttgtcggcgg tggattcact gaatatttca
     2701 atcgcatgtg aaaatgtgga gtgacagtta aatgtaacgc tactagatta catgagttga
     2761 atcgagattt ttatcggcca cttgtaatat caatagttat ttctatcatt ctttgtgtat
     2821 cgatacgcaa ctctgaatct gaatttgctt tcggatcaca gtatgacaag ttgcttatct
     2881 atacgtctgt ttctgaatca gaatttctca cgtatgatga tcttattaca ggttttagta
     2941 taaaatatcc tcctgattgg gacagggcac agcacattga caaatctatc acatttactg
     3001 cccctaaaga aagcaattct aatactatcc cagcaggatt aggaataatt tttaaagaag
     3061 tggcatcaaa tgtgtccttg tcttatattt ctcaaacaca attaaacact ttgaagaatc
     3121 tttatccaga tattaacata ttagaatctt ctgacattac atttgcagga catccagcac
     3181 ataaaataat ctttactgct actgatagca cattacattt gcgaaaagcg atgcaaattt
     3241 ggtttaagga cgatacgaag aagtatctga tattatacaa ggcagatgtt gaaaagtttc
     3301 cgcaatattt acctacgata gagcaaatgt tgaatacgtt ttacacaagc aaataacaat
     3361 tggactagaa agacatatct gcgatataca acatgaaatg tcatgtccaa agccgatctt
     3421 taccagagac tggataaagt aaacgaaata agactcagtg ttaaagggag aaaatcaggc
     3481 agagaaattt ctaggccagt ctggtttgta catgaaggca atactctcta tttgctacca
     3541 gtccagggct cagacaccaa ctggtacaag aacctgctag tcgatccaat gttgaagatt
     3601 tctgtaaatg gcgtagaaat acctgcaaga g
//
LOCUS       DASSIK010000153         3919 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_823025, whole genome shotgun sequence.
ACCESSION   DASSIK010000153 DASSIK010000000
VERSION     DASSIK010000153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3919)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3919)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3919
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_823025"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..285)
                     /locus_tag="VFI64_02855"
     CDS             complement(<1..285)
                     /locus_tag="VFI64_02855"
                     /inference="COORDINATES: protein motif:HMM:NF045046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HET7242258.1"
                     /translation="MRKKANILVTGVGGIVGQGIIKCLKMANADERSSVWYGIIGANA
                     SPLAAGLYMVKKGVIIPKADDAKYIVSLIDIIKRNKVSAVYVGTDPELAII"
     gene            complement(311..1960)
                     /locus_tag="VFI64_02860"
     CDS             complement(311..1960)
                     /locus_tag="VFI64_02860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242259.1"
                     /translation="MNTHQEIGNIFSDYQRLKDPIISEFISSIPTNMSEAASTVLKSF
                     SSENTVVKNRAVLKNKMKQFHLEANTLTKVISEAIDLADQKETKILLAIHQPNLFAYS
                     GVFKKIILLHALKSRIIEKDPTQKVISMFLIINHDFMGDFWTRVAEMPSIRSSGGVLE
                     LRYPVSTRNKWKMTCNSPPPSNIILGRWEKQIFHWIKNSSILDVTEKKAYMGKFDNFW
                     KLVKDSHSRAKSYADFNSFLMSKIVNEIWKYDTLFVNLTELAEAFEDGFKFLISNYSY
                     LANTLRDCEKTFDQYGIRKSVSSNSYLYAPIWLHCKCGSKAPSTFARIAEDTICSGNC
                     MACKKEILLNFGNVTSPEITQETISNISPRAIPILLLLARELNTSCYVTGTGGSLQYT
                     LVASKVFKALNINPPSVILWPSEDRYIGIGQKEALSHSEHTSKHEIRNYLETMHDTVE
                     KQRSAIMPLIRERDLLIKKNLPLEQHLEKIFVIKENQRTIRTLMRKMKKVVNAIELRA
                     CIVDYAINYGIKDVESIWKLALQKNGDLFSPITFPNIVPVK"
     gene            complement(2074..2703)
                     /locus_tag="VFI64_02865"
     CDS             complement(2074..2703)
                     /locus_tag="VFI64_02865"
                     /inference="COORDINATES: protein motif:HMM:NF014826.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HET7242260.1"
                     /translation="MLNIKEDYHVHTNFNDHSPSNLSVANVMKCGEEKGLISIAFTEH
                     VRKTSEWIPKYLEEIDKAKSSGTAVRIIPGFEAKILANGTLDFPEEYAGHFLVASFHT
                     KYGAKDKWYNALKIAIENTRPNSLGHLAPEESFDLSSEELSELSDLIVKFSITVELNA
                     KYRRPPLHWLRIFKEKNVNFHLASDAHRLEDVGNFDPIFNLIDFVGRQN"
     gene            2903..3880
                     /locus_tag="VFI64_02870"
     CDS             2903..3880
                     /locus_tag="VFI64_02870"
                     /inference="COORDINATES: protein motif:HMM:NF014686.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HET7242261.1"
                     /translation="MKNIANTILVPGADGPAGINTIKSLRMSKFSGKIVASDPSPISA
                     GFFMADASEIIPEADNTLFIDHLFKIVSKHKINVLMPSSGYDIFPYSDCKDELLELGA
                     LAVVSDKKSLEICRDKFMTHKALYSKFDLPFTTIDEKKIQEFPVIAKPRYGKGSRDIL
                     KVNDENDLRYALSKYDDLIFQEYLPGIEYTIDVLSNLEQEPLIAVPRIRLQTKAGIST
                     KGRVIRDDQIEDICKSIAGFLKINGPCCIQMKESNDGVLKFLEINPRLGGGTIFTTLA
                     GANFPAMIVQMAKGEELIMPKVSEITVIRYYEEIVIRNEDSMKFESSSS"
BASE COUNT         1203 a          754 c          712 g         1250 t
ORIGIN      
        1 aattatggct agctcaggat cggttcccac atatacagcc gatactttat ttcgctttat
       61 gatatctatc agggagacga tgtatttggc atcgtcagct tttggaataa taactccttt
      121 ctttaccatg taaaggccag cagcgagggg ggacgcgttg gctccaatta taccatacca
      181 tacgcttgat ctctcatcag cattcgccat cttcagacat tttattatcc cttgaccaac
      241 aatgccgcca acaccggtga ctagaatatt agctttcttc ctcaagtaat gagcaactct
      301 tacacaaaca ttattttacc gggacaatat tagggaacgt tataggggaa aataaatcgc
      361 catttttttg cagtgccaat ttccaaattg attcaacatc ttttatccca taatttatcg
      421 cgtagtctac tatacatgct cttagttcaa tggcattaac aacctttttc atttttctca
      481 taagcgttct gatcgtccgc tgattttcct ttattacaaa tattttctct aaatgctgtt
      541 ctaggggtag gtttttctta ataagaaggt ctctttccct tatcaatggc ataatagcgg
      601 aacgttgctt ttctacagta tcatgcatag tttcaagata gttccttatt tcatgtttgc
      661 tagtatgttc agaatgactc aaagcttcct tctgtccaat tccaatatat ctgtcttcag
      721 agggccacag aattacagat ggtggattga tatttaatgc tttaaagact ttgctcgcaa
      781 caagggtgta ttgtaaacta ccacctgttc cagtaacata acaagatgtg tttaattctc
      841 ttgcaagtaa caaaagaatg ggaatagctc ggggagaaat atttgaaata gtctcttgtg
      901 taatttccgg actggtaaca tttccgaaat tcaacaaaat ttccttcttg catgccatgc
      961 agttcccact gcatattgta tcttctgcaa ttctagcaaa tgtggaagga gctttacttc
     1021 cgcatttaca gtgtaaccaa atcggcgcat atagatatga attggaacta acacttttgc
     1081 gaattccata ttgatcaaat gttttttcgc aatctcgaag tgtattcgct agatatgaat
     1141 agttcgaaat caaaaatttg aaaccatcct caaacgcctc ggctaattca gtaaggttca
     1201 caaacaacgt gtcatacttc cagatctcat taactatttt agacatcaag aaggagttga
     1261 aatcagcata cgattttgca cgagaatggg aatctttaac tagtttccag aaattgtcaa
     1321 attttcccat gtatgctttc ttttccgtta catccaaaat tgaagagttt tttatccaat
     1381 ggaaaatttg cttttcccat ctacctagaa taatgttact tggaggaggg ctattacaag
     1441 tcattttcca tttattacgc gtactgacag ggtaccgtaa ttcgagcact ccccctgaac
     1501 ttcttatgct gggcatctca gctactcgtg tccagaaatc tcccatgaaa tcatggttaa
     1561 tgataagaaa catagagata accttctgcg ttgggtcctt ttctataatg cgtgatttga
     1621 gggcgtggag tagaatgatc ttcttgaata ctccgctata tgcaaaaaga ttaggctggt
     1681 ggattgcaag aagaattttc gtttcttttt gatctgccaa atcaattgcc tcactaatta
     1741 cctttgtaag tgtattagct tccaaatgaa actgcttcat tttatttttg agaactgccc
     1801 tattcttaac aaccgtattt tcagaagaga acgatttcag aacggttgaa gcagcctcac
     1861 tcatgtttgt gggaatagaa gatatgaatt cagaaatgat cggatcctta agtctttgat
     1921 aatctgaaaa aatgtttccg atctcttgat gtgtgttcat gcctgagtga gtcgagggaa
     1981 tcaagttgcg ctcatatata aacttctagt aaatgtctgt aataacctgt gcgatacaga
     2041 tgcacactct agttttccaa atccatcgat acactaattt tgccttccca cgaaatcaat
     2101 taaattgaat atgggatcaa aattgccaac gtcctccagt ctatgtgcgt cacttgctaa
     2161 gtgaaaattt acattctttt ctttaaatat acgaagccag tgaagtggcg gtcttctata
     2221 cttggcgtta agctccaccg ttatactgaa tttaacgatc aaatcggaca attcactcaa
     2281 ttcctcggaa ctcaagtcaa atgattcctc aggcgccaaa tggcctaacg aattagggcg
     2341 tgtattttca attgctattt taagggcatt gtaccacttg tccttggccc catattttgt
     2401 atgaaagctt gctaccagga agtggcctgc atactcctct ggaaaatcca atgtaccgtt
     2461 agccaaaatc ttcgcctcaa agccaggaat tatccttact gcagttccag atgacttggc
     2521 cttgtctatc tcttctaaat acttgggtat ccattcagaa gtttttctaa cgtgctcagt
     2581 aaatgctatc gaaatcaaac ccttttcctc tccacacttc ataacattgg caacagatag
     2641 attactagga gaatgatcat tgaaattggt atgtacatga tagtcttctt ttatgtttaa
     2701 cataccattc tggtttcaat ttcggctata tatcaataat gtcaatcgaa aataaggtcg
     2761 atattattat tattggcaaa aaggttggaa attagaggtg taaatttgta ctagttagta
     2821 gcactttaaa attgtatacg ccgaaacaaa aaatctttat aaagaataat tttgcctaaa
     2881 tgtcaggtca cgattatact ctttgaagaa tatcgcaaat accattctgg tgccgggggc
     2941 agacggtcct gcaggaataa atacaatcaa gtcattaaga atgtcaaagt tctctggaaa
     3001 gatcgtggct tctgatccca gtccaatctc tgctggattt ttcatggcag acgcgagtga
     3061 gataatacca gaagcagaca atacattgtt catagaccac ctattcaaaa tcgtgtcaaa
     3121 gcacaagatt aatgtactaa tgccatcgtc aggctatgat atctttccgt atagtgattg
     3181 taaagatgaa ttgttggaac taggggcttt ggctgtagta agcgataaga aatcattaga
     3241 gatttgtaga gacaagttca tgactcacaa agctctctat tcaaaattcg atctgccttt
     3301 tacaacaata gatgagaaaa aaatacaaga atttccagta atcgcgaaac caagatacgg
     3361 taaaggtagt agagatatat tgaaagttaa tgacgagaat gatctacgat acgcgctttc
     3421 aaaatatgac gatcttattt ttcaagaata tctccctgga attgaataca caattgatgt
     3481 tctttcaaat ctagaacaag aacctctgat cgcggtacct cgtattcgat tacaaacaaa
     3541 agcaggaata tctaccaagg ggagagtaat aagggatgat caaatagaag acatttgcaa
     3601 gtcaattgct ggtttcttga aaataaatgg tccttgttgt attcaaatga aagaatctaa
     3661 tgatggagtc ctaaagtttc tggaaattaa tcctagatta ggcggaggaa ctatttttac
     3721 cacccttgct ggtgctaatt ttccagcaat gattgttcag atggcaaagg gagaggagct
     3781 aattatgccc aaagtttctg aaattactgt cattaggtat tatgaggaga tagtaatacg
     3841 taatgaagat tcaatgaagt ttgaatccag ctcttcatag aatcaatatt cgccccaaaa
     3901 cttttagtac aagtaatac
//
LOCUS       DASSIK010000154         6546 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_128574, whole genome shotgun sequence.
ACCESSION   DASSIK010000154 DASSIK010000000
VERSION     DASSIK010000154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6546)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6546)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6546
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_128574"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            155..1243
                     /gene="fni"
                     /locus_tag="VFI64_02875"
     CDS             155..1243
                     /gene="fni"
                     /locus_tag="VFI64_02875"
                     /EC_number="5.3.3.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR02151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004452 - isopentenyl-diphosphate
                     delta-isomerase activity [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type 2 isopentenyl-diphosphate Delta-isomerase"
                     /protein_id="HET7242262.1"
                     /translation="MPDSSDSISDIDILQQRKKEGIRIPLNNDVQARESSNYLEYVKL
                     IHNALPELDYDGIDTSCIFLNHKLGAPIMIDSMTGGTPDATKINSRLGQLAEKYGLAM
                     GLGSQRAGLRSAALAETYSVARQAAPNAFLIANIGGAQLSKGLSIDEINNIIEMIKAD
                     ALAIHLNPLQELVQPEGEPKYKGVLTRIKEIVKVLDIPVIVKEVGAGISNEVAKSLEN
                     VGVAAVNIAGHGGTSWAGVEKLRAEIAQNAVKTRIGELFWDWGIPTALCLIEVRSAVK
                     IPIIASGGIRNGLEIAKCLVLGANVCAMAYPFLKKADESFDNLLLFTETLVAELKSTM
                     FLVGAQTIHELKASHCRITGNLKEEISQ"
     gene            1240..2244
                     /locus_tag="VFI64_02880"
     CDS             1240..2244
                     /locus_tag="VFI64_02880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HET7242263.1"
                     /translation="MSLDSLRSDFDGIATRVTDFILSSLHGHPAELYDASSFYITSGG
                     KRLRPFMVIKSCEMFGGMEIHAIPAAAAVELIHNFSLIHDDIMDNDDVRHGVSTVHKQ
                     YGVPLALLAGDVLFSKAFQILSSSGTNLGIGKDAVSEMVLRLATACISVCEGQAIDTG
                     MAGSEIIPSIELYLDMIRKKTAALFEVSCALGVLCTGASEKDVENLSQFGLNTGIAFQ
                     LIDDLMGVAGDPKLTGKAVGNDIREGKKTYPILLAIKSADRNDKNKIMKVYGYKDSSE
                     ADLQNAVNIICSLGIGSEVRAIARGHMEKALESLSFYPDTDAKRALESSARFIVERSL
                     "
     gene            2249..3976
                     /gene="gltX"
                     /locus_tag="VFI64_02885"
     CDS             2249..3976
                     /gene="gltX"
                     /locus_tag="VFI64_02885"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HET7242264.1"
                     /translation="MELDESVYDFVKSIALKNASQHNGRTNVNVVLSHLMSTKLDLKI
                     SVDKLLPIIKEVVQEVNNLSIERQGVLIQEFSKYYKEEKSFEKGVSLQELANAEQGKV
                     ITRFPPEPNGYPHIGHAKAAIIDEEYARMYNGKMILRFDDTNPLNEKIEYYQAIRDGL
                     EWLGIKPDLVKNTSDDILVLHNYGKRLVSEGHAYICTCTSDIIHKNRAEQIECDCRRD
                     QNEANDRFHRMFDGHYSQNEAIIRFKGDMQSLNTVMRDPTLFRIIDHPHPLLGSKVRV
                     WPTYDLAAPIEDSMDGVTHALRTKEYELRNELYYSILSRLKMRSPILIEFSRLEFDGM
                     PVSKRKIKPLLEGGIISSWDDPRLPTLIALHHRGFVPEAIRKFILGLGITLAETKPPF
                     ETLESINRKMIDPISLKLFFVSSPVELRVEGGKFGKIELRNHPTQDLGNREVEITNKF
                     YITSPDAEDLQLGQKVRLMELYNIKILEVRYENNKKVLIGSYEGDSVIQNMKKIQWVA
                     ENDAVEFSVKVPKELFIGDKYNPNSLELKTGYAESLVSKLKAGTLVQFMRFGFCSILN
                     GKSATYTHR"
     gene            3987..4856
                     /locus_tag="VFI64_02890"
     CDS             3987..4856
                     /locus_tag="VFI64_02890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HET7242265.1"
                     /translation="MKIARVWNDKLGDTYGIISEDGNRLVSKSDFQEQTGIPIPHSIK
                     EFLFKGWIDEVTKNLPIISFSHQVEEVHLLTPIPDPSKIICLAFNYYDHARDAGLAPS
                     DEPVIFIKPRTALNDPFNDIICPSFVKRLDYEAEIAVIIGKDVKKVEPEKALECVFGY
                     MIMHDVSARDIQFKDKQFTRGKSIDTFAPCGPWITTKDEVEDPQNLGIMTKVNGEIRQ
                     NSSSSKMVISIKNIISSLSRIMTLEAGDIISTGTPAGVAMSMKEPKYLKDGDIVEISI
                     ENLGMIRNRIVFE"
     gene            complement(4898..5188)
                     /locus_tag="VFI64_02895"
     CDS             complement(4898..5188)
                     /locus_tag="VFI64_02895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242266.1"
                     /translation="MPDWIKNMRSSHLHEIEDLERIISENSTEQKTLSEHFKISMNKF
                     AGDRSVETCLDALNVSIQLASIRRKLMEAYEQYARLLEGEIIRLRRLCEDKV"
     gene            5288..6130
                     /locus_tag="VFI64_02900"
     CDS             5288..6130
                     /locus_tag="VFI64_02900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HET7242267.1"
                     /translation="MAVDNKGMVSYVRVLKEDLAIFKIKPSEGSVPDFKAGQFVTIGL
                     DVPSEGKIVRRAYSIASPPEQKNWFELVIRWVRKPVPGRLTTELFNKREGDEVLWLKP
                     TGPFTINEKMPDGSPDNRRMVLIGGGTGLAPFIAYSLHLKAIGSKREIVVLHGASYVD
                     ELSYRELLTDLENESLDYGKDKWNFRYRASISRPQEWFNRSWNGQKGRVESFLRPKLG
                     TDRSPLEELVGDRITTENTMFYVCGWQGTVDGALDYLVPKGFVTERNKRKDGTYDVKF
                     ESYG"
     gene            6186..>6546
                     /locus_tag="VFI64_02905"
     CDS             6186..>6546
                     /locus_tag="VFI64_02905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242268.1"
                     /translation="MNFEFEEFSTVEEVFLYLISVAPYMKQVLPVSSYRGYIFSIVPL
                     TPLSGDVLMMIYSKGKMDPGMIEFDISTKKYKNVLSVERADKNYFVILTPRSATVADT
                     AIELIESLSKQKPSEAIH"
BASE COUNT         2095 a         1140 c         1471 g         1840 t
ORIGIN      
        1 atgagaagaa aagttcgtga agctttgaaa atagcctcgt tgggtctgga tgtctggctg
       61 gtaaatggtc tgaaacccaa aagaatagct ggagtactag agaatgtgga ggtagaaggt
      121 acagtaataa agggaaagag aggcaatacc tggaatgcct gattcgtcag actcaatttc
      181 agacatcgat atccttcaac aacgaaagaa agaaggaatt agaatccctt tgaataatga
      241 tgttcaggca agagaatctt caaattattt ggaatatgtt aaattgatac acaatgcact
      301 gcccgagtta gactatgatg gaattgatac ttcttgcatt tttctaaacc acaaattggg
      361 tgcaccaatt atgatcgatt ccatgactgg gggaaccccc gacgcaacca agattaattc
      421 taggctagga cagttagcgg aaaaatatgg cctcgccatg ggattaggta gccaaagagc
      481 tggacttcga agtgccgcgt tagctgaaac ttattctgtt gctcgacagg ctgcgcctaa
      541 tgcatttctt attgcaaaca taggaggagc tcaactttca aagggtttgt caattgatga
      601 aatcaacaat ataatagaaa tgataaaggc agacgctcta gcaattcatc ttaatccact
      661 tcaagaactt gtgcaacctg aaggtgagcc aaaatataag ggtgttctca caaggataaa
      721 ggaaattgtc aaggtccttg acatccctgt aatagtaaag gaagtaggag ctggtatttc
      781 aaacgaggtt gcaaaaagcc ttgaaaatgt tggcgtggca gccgtgaata tcgctggaca
      841 cgggggtaca agttgggccg gtgtagaaaa attgcgagct gaaatagctc aaaatgccgt
      901 caaaacaagg ataggagaat tattctggga ctgggggatt ccgactgcgt tgtgcttgat
      961 tgaggttaga agtgcagtaa aaattcccat cattgcatct ggagggataa ggaatggcct
     1021 agaaatcgct aaatgtctag ttctgggggc gaatgtttgc gctatggcat acccttttct
     1081 taaaaaagca gatgagtctt tcgacaactt gctattgttc actgaaactt tagtcgcgga
     1141 attaaaaagc acaatgtttc tcgtaggtgc acaaactata catgaactaa aggcgtctca
     1201 ttgcaggatt actggtaatt tgaaggaaga gatttcccaa tgagtcttga tagcttgagg
     1261 agtgactttg acggtattgc gacaagagtc acggatttca ttttatcctc tttgcacgga
     1321 caccctgctg aattatacga tgcatcttca ttttacatta ccagtggggg taaaagactt
     1381 cgtccattta tggtcatcaa gagttgtgaa atgtttggag ggatggaaat ccacgccatt
     1441 cctgctgccg ctgctgtaga gctcattcac aatttctcgc ttatccatga tgatataatg
     1501 gacaatgacg atgtacggca tggggtgtcc acagttcaca agcagtatgg tgtaccactg
     1561 gcattgttgg ctggagatgt cttgttctca aaagcatttc aaatcctgtc atcaagtggt
     1621 actaatttag ggattggtaa agatgcagtt tccgaaatgg ttctcagatt ggctacagcg
     1681 tgcatttctg tctgtgaagg acaggctatt gatacaggca tggcgggaag tgagattatc
     1741 ccatctatcg aactatactt ggatatgata agaaagaaaa cagccgcact ttttgaagtt
     1801 tcatgcgccc tcggagtact ctgtactggc gcatctgaaa aagatgtgga aaacctttcc
     1861 cagtttggcc ttaatacagg catagctttc caattgattg atgatttaat gggggttgcg
     1921 ggagatccca aattgactgg taaagcagta ggcaatgaca taagagaagg gaagaagaca
     1981 taccctatat tactggcaat aaagtctgcc gataggaatg acaaaaacaa aattatgaaa
     2041 gtctacggat ataaggacag ttccgaagca gatttacaga atgccgtgaa tataatctgc
     2101 tcattaggaa ttggaagcga agttagagca attgctagag gacatatgga gaaagcctta
     2161 gaatcattga gcttttatcc tgataccgac gcaaaaaggg ctttagaatc ttcggcgaga
     2221 tttattgttg agaggagttt gtgactttgt ggaattagat gaatcagtat atgatttcgt
     2281 aaaatcaata gcgttaaaaa atgcgtccca acataacggc aggaccaacg tcaatgtcgt
     2341 tttatcgcat ttaatgagta caaaacttga tctaaagatt tctgttgata aattacttcc
     2401 tataattaag gaagttgttc aagaggtaaa taacctaagt attgaacggc aaggagtctt
     2461 aattcaagag ttttctaaat attacaagga ggaaaaatct tttgaaaaag gggtttccct
     2521 tcaagaacta gcgaacgccg agcaaggtaa agttataacc agatttccac ccgagcccaa
     2581 tggatatccc cacataggtc atgcaaaagc agctataata gatgaagaat atgcaaggat
     2641 gtataatgga aaaatgatcc ttcgctttga tgatacaaac cccttgaacg aaaagataga
     2701 atattaccaa gcaatccggg atggcctgga atggttggga atcaaacctg acttggtgaa
     2761 gaatacttca gatgatatct tagtacttca caattacggg aaaagactcg tatccgaagg
     2821 ccatgcgtat atatgtactt gtacgagcga tatcattcat aagaacagag ctgagcaaat
     2881 tgaatgcgat tgtaggaggg atcaaaatga ggcaaatgac agattccata gaatgtttga
     2941 tggtcattat tctcaaaatg aggcaattat cagatttaaa ggcgatatgc agagcttgaa
     3001 tacggtcatg agagacccaa ctttatttcg gataattgac catccgcacc cattattggg
     3061 atcgaaggtg cgtgtttggc ctacgtatga tttggcggcg ccgatagaag atagtatgga
     3121 cggcgttacc catgcacttc ggacaaagga atatgagcta cgcaacgaat tatactattc
     3181 tattttgtca agacttaaaa tgagaagtcc tatactcatc gagttttcta gattggaatt
     3241 tgatggaatg cctgtttcta agaggaagat caaaccttta ctagaaggag gtatcatctc
     3301 atcgtgggat gatccgcgtt taccaacact tattgccttg caccacagag gctttgttcc
     3361 agaggctatc cgaaaattca tcctagggct tggtatcact ctagcagaaa ccaaaccacc
     3421 gttcgaaacg ttagaatcaa tcaacagaaa aatgatagac ccaatttcgc tgaaactgtt
     3481 ctttgtgtct tctcccgtgg agctaagagt tgaagggggt aagttcggga aaatagagct
     3541 tcgtaatcac cccacgcaag atctcggcaa tagagaagta gaaattacaa ataagttcta
     3601 tattacatcc ccagacgcgg aagacctgca acttgggcag aaagttagac taatggaact
     3661 atataacatc aagatattag aagtcagata tgaaaataat aaaaaagtct taatcgggtc
     3721 ctatgaaggt gacagcgtaa ttcagaatat gaagaaaatt caatgggttg cagagaatga
     3781 tgcagtcgag ttcagcgtca aagttccaaa agaactattc ataggtgata aatacaatcc
     3841 caacagttta gaattgaaaa caggatatgc cgaatcatta gtttcgaaac tgaaagctgg
     3901 cactttagtg caatttatga ggtttggatt ttgtagtatt ctcaacggca agtctgccac
     3961 atatacacat aggtagaagc gaaaaaatga agatagcaag agtttggaat gacaaattgg
     4021 gcgacacata tgggattatt tcggaagacg gaaatcgtct ggtttccaaa tctgattttc
     4081 aagagcaaac tggaatacca atacctcaca gcataaagga atttctcttc aagggctgga
     4141 ttgatgaggt tactaagaat ttaccaataa tcagcttttc gcatcaagtc gaagaagtgc
     4201 atctattaac tccaattcca gacccatcta agataatttg tcttgccttt aattattatg
     4261 atcatgctcg cgatgcgggt ctggcaccat ccgatgaacc agttattttc ataaaaccca
     4321 gaaccgcttt gaatgacccg ttcaatgaca tcatttgtcc aagttttgta aagaggcttg
     4381 actacgaagc cgagatcgcc gtgattatag gaaaggacgt aaagaaagtt gaacctgaaa
     4441 aggcgcttga atgcgtgttt ggttatatga taatgcacga tgtttcggct agggacattc
     4501 aattcaaaga taagcagttt acgcgtggaa agagcattga cacttttgca ccttgtggac
     4561 cttggataac aacaaaagat gaagttgaag acccgcaaaa tttagggata atgactaaag
     4621 tcaacggtga aattagacag aattcttcga gtagtaaaat ggtcatctct atcaaaaaca
     4681 taatttcatc tcttagcagg attatgactc ttgaagcagg cgatattata tccaccggaa
     4741 cgcctgcagg agtagcaatg tctatgaagg aaccaaagta tctcaaagat ggtgacattg
     4801 tggaaatttc tatagaaaat ctaggtatga taagaaatag aattgtattt gagtgagctt
     4861 aagatatcga atgaagtatg ttattcgagg aagtaggtca tactttatct tcgcaaagtc
     4921 ttcttaatct gattatctct ccttctaata atctcgcata ttgttcatag gcctccatta
     4981 attttcttct tatactcgcc aactgaattg agacattaag cgcatcaagg caagtctcga
     5041 ctgatcgatc tccagcaaat ttattcatgg aaattttaaa gtgttctgac agtgttttct
     5101 gttcagtgct attttcacta atgattcttt ccaaatcttc aatctcatgt aagtgactac
     5161 ttctcatgtt tttaatccag tcgggcattg tctattgctt atggttcaac atatttaacc
     5221 gaaataggtc ttgattgaac ccaaattgac aatgtattta tttacgtaga tgggttttca
     5281 aacttgtatg gcagtggaca ataaaggaat ggtttcgtat gtccgtgttc tgaaagaaga
     5341 tttagcaata tttaaaatta agccttcaga aggctctgtc cctgatttca aagcgggcca
     5401 atttgttact attggcctcg atgttcctag tgaaggcaag attgtcagaa gagcttattc
     5461 tattgcttca ccaccagaac aaaaaaattg gttcgaattg gttatccgat gggttagaaa
     5521 acctgtccca ggtcgcctca ccactgaatt gtttaacaag agagaagggg atgaagtttt
     5581 gtggttgaaa ccaactggtc catttaccat aaatgaaaaa atgcctgatg gttcaccaga
     5641 taataggcgg atggtcctta ttggaggagg aactggtttg gcgccattca ttgcatactc
     5701 tctccatttg aaggcgattg gcagtaagag ggaaatagtt gtattacacg gtgccagtta
     5761 tgtggacgaa ttaagctaca gagagcttct aactgattta gaaaacgaaa gtcttgatta
     5821 cgggaaggac aaatggaact ttcgttatag agctagtatc agtagacctc aggagtggtt
     5881 taatagaagt tggaacgggc agaaaggaag agtcgagtct tttcttagac cgaagcttgg
     5941 aactgataga tctcctttag aggaattggt cggggacagg attactactg agaataccat
     6001 gttttatgtt tgtggttggc agggcactgt tgatggagct ctggattacc tggttccgaa
     6061 gggctttgta acagaaagaa acaaaaggaa agatggaact tatgatgtga aatttgaatc
     6121 atatggttaa aggtatagag actcaaacct tatacttata tcactgacgg attagcaatt
     6181 agcatatgaa ctttgaattt gaagaatttt caactgtaga ggaggttttt ttatatctta
     6241 tatccgttgc accatatatg aaacaagttc ttccagtaag ttcttacaga ggttacatat
     6301 tttccatagt accccttacc cctctttcag gtgacgtatt gatgatgatt tattccaagg
     6361 gcaagatgga ccctggaatg atagaatttg atatctcgac taagaaatat aagaatgtgc
     6421 tttcggtaga gagagcagac aagaattatt ttgtgatttt gactcctaga tcagccactg
     6481 tggcagacac agctattgaa ttaattgaga gtttatccaa gcaaaaacct agcgaagcaa
     6541 ttcact
//
LOCUS       DASSIK010000155         2053 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_129000, whole genome shotgun sequence.
ACCESSION   DASSIK010000155 DASSIK010000000
VERSION     DASSIK010000155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2053)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2053)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2053
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_129000"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1089)
                     /locus_tag="VFI64_02910"
     CDS             complement(<1..1089)
                     /locus_tag="VFI64_02910"
                     /inference="COORDINATES: protein motif:HMM:NF015325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HET7242269.1"
                     /translation="MKDNEKNRTRYLCLTSEILEGRSKSFSIYDDKGLREDIAVFNIN
                     GKYHAISDTCAHKGGPLSQGILKEDVVTCPWHGWKYNVHSGKSPHKGGDSVNGFVTKV
                     IGNKLYIDPIPSTLGNKVYTPHKKYADLQNSVKNHLTLLDKDSRMPLDSNVHVLGIST
                     TNSNDKVAPRKSTSEGALNFALDYAKKKLGTECIMIKLRQLNFKHCEGYYSKNAKACI
                     FPCSISEMDEEDQMLEIYEKVILWSDVVIVSTPIRWGNASSLYYQMVQRMNCVQNQSV
                     THNQYLIRDKAAAFIITGGQDNVQHVAGEMLSFWSQLGFVFGKFPFVGWSRGWYAEDM
                     ENNYDSMMTKESPMKRDIMRTVLGAVEMA"
     gene            1348..>2053
                     /locus_tag="VFI64_02915"
     CDS             1348..>2053
                     /locus_tag="VFI64_02915"
                     /inference="COORDINATES: protein motif:HMM:NF014035.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HET7242270.1"
                     /translation="MVGLLLGVLRFPLIIGVETSIGVAAGTNIGISTMAAIPAAVRHL
                     RQNKINTRIFFVMAITGAVGAFCGSLLTTYVPVALLLGFIGIIVSYESVVLIRGKSKI
                     RNELDTKDESMSKNKILLIESIIGFAIGFLGGLVGLVLGSIRLPTMISVLKMKPSVAI
                     GTNLATSSVMGISGFIGHLVNNEVDFLILIVMGFAAMIGGYIGASFTHRFSERNLKRI
                     IGIILIVVAITMFIRAA"
BASE COUNT          582 a          408 c          365 g          698 t
ORIGIN      
        1 ggccatctct actgctccca aaacggtccg catgatatct cttttcatgg gcgactcctt
       61 agtcatcatg ctgtcatagt tattctccat atcttcggca taccaccccc tgctccatcc
      121 cacaaatgga aatttaccga aaacaaatcc taactgggac caaaacgaca acatctcacc
      181 tgcaacatgt tgaacattgt cctgtcctcc agtaattata aacgcagcag ctttatctct
      241 gataagatac tgattatgag taaccgattg attctgcaca caattcatcc tttgaaccat
      301 ttgataatac aatgaactgg catttcccca tctgattggt gtagaaacta tcactacatc
      361 tgaccatagt atcacctttt cgtatatctc taacatctgg tcttcctcat ccatttcaga
      421 aattgaacaa ggaaaaatgc aagcttttgc atttttggaa tagtaacctt cacagtgctt
      481 aaaattcaat tgtctgagct taatcatgat gcattcagta cccagctttt tcttcgcata
      541 atctaatgca aagtttagcg ccccctccga agtgcttttt cttggagcaa ccttgtcatt
      601 tgagttagtt gttgatattc ccaagacatg tacattactg tctagaggca tccttgaatc
      661 tttgtccaaa agtgttagat gattttttac tgaattttgt aaatccgcgt atttcttatg
      721 aggagtgtaa actttgttcc caagcgttga tggaatagga tcaatgtaga gcttgttacc
      781 tatcactttt gttacaaagc catttacact gtctcctcct ttgtgaggcg acttgccgct
      841 gtggacatta tatttccatc catgccaagg acacgttact acatcttctt ttagaatgcc
      901 ttgactaagg ggacctcctt tatgcgcgca ggtatcagat atggcatgat atttcccatt
      961 aatattgaat acagcgatat cctctctgag tcctttatca tcatagattg aaaagctctt
     1021 cgacctaccc tcgagtattt cagatgttaa gcagagataa cgagttctat ttttctcatt
     1081 atctttcata attctcttca ttacgcttac ctgtattcca ttatcaaata cttactagta
     1141 aagctaatcg ctaatttgcg attatattcg attgccgcct tcggtcaaat tcattgtatt
     1201 catacttatc ttgtagccaa ttaactaaat attttcaaag ataaacgcga tatttataat
     1261 tgagatttta tcattctggt tatcgagttc aatttattag ttccaatcct tggaataatt
     1321 ggttttacaa ttggttttgt gggtggaatg gttggcttat tactaggagt tttacgattt
     1381 ccacttatca ttggtgtcga aacttctatc ggtgttgcag caggaactaa tattggaatt
     1441 agcacgatgg cagccattcc cgcggctgtt cgacacctca gacaaaataa gataaacact
     1501 agaatttttt ttgttatggc aataacaggt gcagttggtg ctttctgcgg ttcactttta
     1561 acaacatacg ttccagttgc tttattgctt ggttttatag gaataatagt atcctatgaa
     1621 tcagtagtcc taatcagagg aaagtccaag ataagaaatg agttagatac aaaggacgaa
     1681 tccatgagta agaacaaaat attactgata gaatcaataa ttggttttgc aataggattt
     1741 ctgggcggtc ttgtcggtct agtattagga agtataaggt taccaacaat gatttctgtc
     1801 ttaaaaatga aaccttcagt tgcaattggt actaacttgg caacatcatc cgtaatgggt
     1861 atttcaggtt ttattggaca cctagtcaac aatgaggttg attttttaat cctcattgta
     1921 atgggttttg cggcaatgat tggtggatat ataggcgcaa gtttcactca ccggttcagc
     1981 gaaaggaatt tgaaaagaat cataggaata attttgatag ttgttgccat tacaatgttc
     2041 attcgcgctg cta
//
LOCUS       DASSIK010000156         2799 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1410051, whole genome shotgun sequence.
ACCESSION   DASSIK010000156 DASSIK010000000
VERSION     DASSIK010000156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2799)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2799)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2799
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1410051"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            688..1386
                     /locus_tag="VFI64_02920"
     CDS             688..1386
                     /locus_tag="VFI64_02920"
                     /inference="COORDINATES: protein motif:HMM:NF014625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIG-L family deacetylase"
                     /protein_id="HET7242271.1"
                     /translation="MAIGAHPDDIELGCGGLLIKAARNGHHVYLYNITQGEKAGDPRQ
                     RIEELRRSARYIGAKALYIDRFPDTQLFLTSDLINHIESCVNMCRPDLIITHPMTDTH
                     HDHRVVAEASIEAGRNVSNMLSYEMPLTKDFNPHIYYDISDSMDAKLELLSLFQSQSH
                     KIFLESKAIRGLAQYRALQSRLSSDVSYAESFQIVKVALDGNFTFLNNSSCINAKENV
                     DTQASAALCECIYV"
     gene            complement(1575..2045)
                     /gene="trxA"
                     /locus_tag="VFI64_02925"
     CDS             complement(1575..2045)
                     /gene="trxA"
                     /locus_tag="VFI64_02925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HET7242272.1"
                     /translation="MENYENDKELNDILSRKRNELIERVKSTVGSSRASTVVIDSPIL
                     LTDSNFNNEVGKYPLLVVDFWAPWCGPCRMVSPVIEQLARELAGKVVFGKVNVDENPT
                     VAGAFGIQSIPTIAILKNGKAIDGFVGAASKSQMEAKIITHLESGNSNMSGGIH"
     gene            2155..2577
                     /locus_tag="VFI64_02930"
     CDS             2155..2577
                     /locus_tag="VFI64_02930"
                     /inference="COORDINATES: protein motif:HMM:NF014080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HET7242273.1"
                     /translation="MIVSSLTPLTCINCSCEDLFTCLYNLSSSDIQVLAILLRAKDQE
                     GLTLEFLRKHVNRDKGTVFRSLQKLVGLGFSTKHTRTLKQGGYYHVYAAADVNTIEKN
                     VNQRIMEIESSLNRIKRKFRADIKKIVSAKVLQTSVAD"
BASE COUNT          867 a          540 c          489 g          903 t
ORIGIN      
        1 gtaatgatac taatgaaagt tgtcagttga gttagtgatc attacctgta tgagttcgtc
       61 ggtttgttaa attgccaaac atctattaaa tccattacaa atgatttcca agtagtaaaa
      121 gactggattc tgataccaaa tttcaaagta accggatgag tcactgtatt ccgtctatcc
      181 ggctgtctgt ttacctcacc gtgcaatggg atatttaatc atttcagcaa attcacataa
      241 atctaccata ttgagccatt cgttattttt taaattcacg ctacctaatc atactaataa
      301 aagttttcag attagttcat cacaaaccat tttgataccc atcttgcgat gatattcaat
      361 ctgattgact atattaacgc taaaggataa tgcgagtccc catatggcta agcttagcct
      421 taatggtaaa attatctcat tgcattgata gaatatgtaa ttgttaaggt gtttttgcaa
      481 tggaattatg attcatagtt gcttatatga gcctccgagc ttcacttgtt gcgaaatttg
      541 ggaatcattc tgatactagg tgaaactatc aaattctcgc cacatattac gaataagaca
      601 gacattgact cttattccca taattgatgt tcagaatccc ctggaaacta ttagtatctt
      661 ttttcctcaa tcataaccat gaatattttg gcaatcggcg cacatccaga cgatattgaa
      721 ctagggtgtg gtggactgtt gattaaagca gcaaggaatg gtcatcatgt ttatttatac
      781 aatataaccc aaggtgaaaa agcaggagat cctcgacaaa ggatagaaga attaagaaga
      841 tccgcaaggt acattggagc caaggcgctt tacatagaca gatttcctga cacacagtta
      901 ttccttacaa gcgatttaat caatcatatt gaatcatgcg tcaacatgtg taggcccgac
      961 ttaatcatta ctcatccaat gactgatact catcatgatc atagggttgt ggctgaagcc
     1021 agtatagaag ctggaagaaa tgtgtcgaat atgttgtcat acgaaatgcc tctgacgaag
     1081 gattttaatc cccacattta ttatgatata tccgactcga tggacgccaa acttgaattg
     1141 ctcagtctat ttcaatcgca aagtcacaag atctttttag aatcaaaagc gatcagaggt
     1201 ctcgcacagt atcgagcact tcaaagtagg ctaagctcag atgtatctta tgcagaatca
     1261 ttccaaattg tcaaagtcgc tttagatgga aattttacat ttttgaacaa ctcgtcttgt
     1321 attaatgcta aagagaatgt agatactcaa gcttcagcgg ctctttgtga gtgcatttat
     1381 gtatagctcg caataaattc catcattttt atatctataa tctagagatt tactttgaaa
     1441 gacaactatc gttactttct aaaggcatta atggtaggct tttttactgg cagctccaat
     1501 tcataaatcc ggggaaatcc gtgagtgaac ttccataaaa tacctggaaa aggcccttac
     1561 acctatcttt gtttttagtg tatgccacca ctcatattgc tgttaccact ttccaagtga
     1621 gttatgattt ttgcttccat ttgagatttg gacgctgcac ctacaaagcc atctatggcc
     1681 tttccattct ttaatattgc tatagttggt atgctctgta tcccaaaagc accggcaact
     1741 gttgggtttt catctacgtt taccttacca aacactactt ttcctgcaag ttccctggca
     1801 agctgttcaa tgacgggcga aaccattctg caaggtccac accaaggagc ccaaaaatca
     1861 actaccaaaa gaggatattt ccctacttca ttattaaaat tagagtctgt caataaaatt
     1921 ggggagtcta tgacaacagt agatgcccta ctactgccaa ctgtgctctt caccctttcg
     1981 atcaattcgt ttcgcttcct ggataatata tcatttaatt ccttatcatt ttcataattt
     2041 tccataattt tttataacca ttaaatgtaa atagttggaa actattaaac attatgtgtt
     2101 ggtgttgcca atccagtaca aaaccttaat tatcttgaac tattctttta caatgtgatc
     2161 gtttcctccc ttactccatt aacatgcata aattgttctt gtgaggatct ttttacctgt
     2221 ctctacaatt tatccagttc agatattcag gtattagcga ttttgttaag agctaaggac
     2281 caagagggat tgactttgga atttcttcga aaacatgtta atagagacaa gggtactgta
     2341 tttaggtcat tacagaaact agtgggacta ggtttctcta ctaaacatac aagaactttg
     2401 aaacaaggtg gatattacca cgtctacgca gccgcggatg tcaatactat agaaaagaac
     2461 gtaaatcaaa gaataatgga aatcgaatct tccctgaaca gaatcaaaag gaagttcaga
     2521 gccgatatta aaaaaatagt ctcagctaaa gtgttacaaa ctagtgttgc agactagggc
     2581 aagttggaac tcctttgcga gtagtgatag aacagtgatc cataggatgc tttctacatt
     2641 cgccaattgg gatgtaggaa taataaaata aattgttatt tgttctgatg gctggaagat
     2701 tccacctttt agtcccgctg tttatttcat ttcctcttta tgttgttcac ctaaaggaga
     2761 agacctatcc gtagccaaat actttcttac cgtatctat
//
LOCUS       DASSIK010000157         4237 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_623620, whole genome shotgun sequence.
ACCESSION   DASSIK010000157 DASSIK010000000
VERSION     DASSIK010000157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4237)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4237)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4237
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_623620"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2129
                     /locus_tag="VFI64_02935"
     CDS             <1..2129
                     /locus_tag="VFI64_02935"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF012387.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HET7242274.1"
                     /translation="SIFLIAVTFFRKDLNTPLVVAIAFTAATLLCAGAFPRPGLSFVT
                     GLPGISLIGATIFLAVSFIVKRLTDERKFVRNNLIWLGAFFIVGVGIISTGVFHTASF
                     RYLNAINPFLSSQNPLVESVAEHFTPTLVDYFTDYSVLLMFAGFGAWMAFKRRNDTSI
                     FALLIGITGVYVSATFARLLVFASIGIIVLAGIGLYEITRSILVYRATRSPTAGQKTK
                     KKLEREGASQISTPIRIVFIALIILLISLPILDNSGMIIPPNSNWISSADIPPSIANG
                     GTGYRLTTNDWTNALNWISSNTPENSVVAAWWDYGYWITTVGNRTSLADNGTINQTRI
                     ATIAKMFMDQTENGLKIAKDLKADYILVYVVGQRFSGNNGTDFYVLGSGGDESKKQWF
                     IRIGGFKEDKYLQQDGFTPTPYFWNRTLLGSIIPFTPQSYASFDKGMLTNLAEQYQPG
                     TVALYTKDIKYPADGRSDQPLKLVYASDSFNSHQTGLFFGVLIYQVNHNYVPKPTSDP
                     YNEKDTDAAGTSFSQAGNVGSRANTTESREVARIDTTQGPITVAFYPNAAPNHVANFE
                     KLAKSGFYNDTIFHRIVKGFVIQGGDNNTKPDGKPREFWGTGGPGYSILSEFNDIPHV
                     RGILSMARSSDPNSAGSQFFIVSNDSRFLDGQYTVFGHVIEGMDVVDKIANLTTIQND
                     QPKDPDAARIQSITILNRNSLQNMSK"
     gene            complement(2184..3161)
                     /locus_tag="VFI64_02940"
     CDS             complement(2184..3161)
                     /locus_tag="VFI64_02940"
                     /EC_number="2.5.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyhypusine synthase"
                     /protein_id="HET7242275.1"
                     /translation="MSPRKSEQKKSPNKKILVRSVKDYEIKSDSVTSIVNDMANSGGF
                     ESTNLSVGTQILRKMGKDPSCTRFLSFVGAILSTGVRGIIRDMLKHKMFDCVITTCGA
                     LDHDIARASAKYYSGDLRMDDRMLHKHNVHRLGNILVPQDSYGPRIEEAVQSCLKTVY
                     YDKSIRNISPHELIKHIGSTLDESSFLYWAFKNDIPVIVPGIVDGAVGSQIWFFHQQH
                     KDFNIDILSDETKLSDFVYEAKKTGAFMIGGGISKHHTLWWNQFRGGLDYAVYITTSS
                     EWDGSSSGALVAEAISWGKVKDMAMQTTIHGEATILLPFIYSTLTTNPK"
     gene            complement(3268..3768)
                     /locus_tag="VFI64_02945"
     CDS             complement(3268..3768)
                     /locus_tag="VFI64_02945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HET7242276.1"
                     /translation="MEYNTDANSSSRLILLGEMEKQFDERNVPFFESLLEHEDYVIRT
                     RSVCILANIAGEKAVESIARVLKNDADALVRHEAAFSLGQLGFTSGTKSLAEAVESDS
                     SFFVRHEAAVALGVIGSEDSRKTLVDALADSSEEVRESAIIALANLDYLTTTNRNNSF
                     TKMTGG"
     gene            3879..>4237
                     /locus_tag="VFI64_02950"
     CDS             3879..>4237
                     /locus_tag="VFI64_02950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242277.1"
                     /translation="MTIKDVLDSTYPQEKANHWDIKCMQGEYQHFGIFWFRYGTPVDK
                     EPAHGISFYFNDVPQITIQNLIEFLQSKYGGTVLHRQSRVFLQGSNEFSDPQTIGQLA
                     NEISVKFNGPVELTIEF"
BASE COUNT         1310 a          866 c          826 g         1235 t
ORIGIN      
        1 tatctatatt cttaattgca gtaacatttt ttagaaaaga tcttaatacg cccctcgtgg
       61 tggcaattgc atttactgct gctactttgt tatgcgcagg cgcatttcca cgacctgggc
      121 tttcattcgt gacaggattg ccaggaatat ctctgatcgg agccacaata tttttggctg
      181 tctccttcat agtgaagaga ctcacggatg aaagaaaatt tgttagaaac aatctgatct
      241 ggctaggtgc attcttcatc gtcggtgtgg gaataatttc tacaggtgtc tttcatactg
      301 cttcattcag atatttaaat gccataaatc cattcctctc ctcacaaaat ccactggttg
      361 aatcagttgc ggaacacttt actcccacac tagttgatta cttcacagat tattcagttc
      421 ttttgatgtt tgctgggttt ggggcgtgga tggcctttaa gcgtagaaac gatacttcta
      481 tattcgcgct gctcatcggt ataacaggag tctacgtaag tgccactttt gcgagactac
      541 ttgtatttgc ttcaatcggg attatagttt tggcaggcat tggcctttac gaaataacta
      601 ggagcatatt agtttacaga gcaacacgct ctcctaccgc aggacagaaa acaaagaaga
      661 aactagagcg agaaggagca tcccaaataa gtacgccaat aagaatagta ttcatcgcat
      721 taatcattct cctcatctca ctgccaattt tggataatag tggcatgata atccctccga
      781 actcaaattg gataagttct gctgacatcc ctccatcgat cgccaacggt ggaactgggt
      841 acagactaac tacaaacgat tggacaaatg cgctaaactg gatttcgagc aatacgcctg
      901 agaattcagt agttgcagca tggtgggatt atggatattg gataacgaca gttggaaaca
      961 ggacaagtct tgcagataac ggaacaatca atcaaactcg aattgctacc attgcaaaaa
     1021 tgttcatgga tcagactgaa aatggattga agatcgccaa agatcttaag gccgactata
     1081 ttttggttta tgttgttggt cagagattca gtggaaataa cggaacagat ttctatgttt
     1141 tggggagtgg cggtgatgaa agtaagaaac agtggtttat taggataggt ggatttaaag
     1201 aagataaata cttacagcag gacggattca cgcctacacc gtacttctgg aatagaacgc
     1261 tactcggcag cataatacca tttactcccc agtcctacgc atcattcgac aaaggcatgc
     1321 ttactaattt agcagagcag tatcaacctg gcacagttgc gctgtacaca aaagatatca
     1381 aatatcctgc cgatggaaga agtgatcagc ctttgaaatt agtttacgca tctgacagct
     1441 ttaatagtca tcaaacagga ctattttttg gcgttttgat ttatcaagtc aaccataatt
     1501 atgtgccaaa acctacgtca gatccttaca acgaaaagga tacggatgcc gccggaacct
     1561 cattctccca ggccggtaat gtgggcagcc gtgcaaatac caccgaatca agggaagtag
     1621 ctaggataga cacaacacag ggcccgataa cagtagcatt ctatcccaat gctgctccta
     1681 atcatgttgc caacttcgag aaacttgcaa aaagtggctt ttataacgac acgatattcc
     1741 ataggatagt caaaggattt gtaatacagg gtggagataa caacacgaaa ccagatggca
     1801 aacctagaga gttctggggt acagggggtc caggatattc aatcctatct gaatttaatg
     1861 atatacctca cgtgcgagga attctatcaa tggctagatc cagtgacccg aatagtgctg
     1921 gctcccagtt ctttattgta tcaaatgatt caagattctt agatggtcaa tacacggtat
     1981 ttgggcatgt gatcgaagga atggatgtag tcgataaaat tgctaatctc acaacaattc
     2041 aaaatgatca accaaaagat cctgacgctg caagaataca atctatcact attctgaata
     2101 gaaacagttt gcaaaatatg agtaaataag tacatcaaaa agagactaaa gtaatacatg
     2161 tcgagtcaag tataaggtgt tacctatttc ggattagttg tcagagtaga ataaataaaa
     2221 ggcagtagaa tggtcgcctc cccatgaata gtagtctgca ttgccatatc tttgaccttg
     2281 ccccacgata tggcctcggc caccaaagct ccactcgaac taccgtccca ctctgatgat
     2341 gttgttatgt atacggcata gtcaagtcct cccctaaatt ggttccacca cagagtatgg
     2401 tgttttgaaa ttcctccacc tatcatgaat gcgccagttt tttttgcctc ataaacaaaa
     2461 tctgatagtt ttgtttcatc agaaagaata tcgatattga aatctttgtg ttgttgatgg
     2521 aaaaaccaga tctggctgcc aactgcacca tcgactatac ctggaactat tacgggaata
     2581 tcatttttaa atgcccaata gagaaatgac gattcatcaa gtgtgctgcc aatatgtttg
     2641 atgagttcat gtggggagat attacgaata ctcttgtcat aataaacggt cttgagacat
     2701 gattgaaccg cctcttctat ccgaggtccg taactatctt ggggcactag tatgttaccc
     2761 aatctatgta cattgtgttt atgcagcatc cgatcatcca ttctcaagtc tccagaatag
     2821 tattttgcac tggcacgtgc aatatcgtgg tcaagggcac cacaagttgt gattacacag
     2881 tcgaacattt tgtgctttaa catgtctcga ataatccctc ttactcctgt agataaaatg
     2941 gcacccacaa aagaaagaaa tctagtgcag gagggatctt tccccatttt gcgcaatatc
     3001 tgtgtgccta cagatagatt agttgattca aaaccgccag aattcgccat atcatttaca
     3061 attgaagtaa ccgaatctga cttgatttcg taatctttta cacttctgac taggatcttc
     3121 ttattaggac tctttttctg ctcactcttt ctcggggaca caataggtat cacaagaagg
     3181 tgtataaaat agatttgctc ttttaataaa acaaatcaat tctaaaaaaa tattaaaatt
     3241 acatcaattc ataaaaagta aattaaccta tccaccagtc attttcgtaa acgaattatt
     3301 cctgttggtc gtcgttagat agtccaagtt tgcaagagct attattgcgg attccctcac
     3361 ctcttcacta gagtcggcta aagcatcgac taaggttttt cttgaatctt cagaccctat
     3421 aactcccaaa gctacggctg cttcgtgacg tacaaaaaaa cttgagtcgg attctacagc
     3481 ctcagcaagc gatttagtcc cacttgtgaa gccaagttga ccaagagaaa atgcagcctc
     3541 atgccggaca agggcatctg catcattttt cagaactctg gcaatagatt caacagcttt
     3601 ttcacctgca atatttgcca aaatacatac tgatcgagtt ctaattacat aatcttcatg
     3661 ttctaacaag gactcaaaaa aaggaacatt tctctcatcg aattgttttt ccatttcacc
     3721 caataatatc aatcgagaag atgaatttgc gtctgtatta tattccatag atatttcatg
     3781 aggtaagtag ggtattttat ctttctttcg tgactgttcg ccacattatt ataatccttg
     3841 tattttaatc ttccatgttg cgtattaggt actggcgatt gactataaaa gacgtccttg
     3901 attctacata tccacaagaa aaagcaaatc actgggatat caaatgtatg caaggagagt
     3961 accagcattt tggcatattt tggttcagat acggcactcc ggtagataag gaaccagcac
     4021 atggaattag tttttacttt aatgacgtac cacaaataac tattcagaat ctgatcgaat
     4081 tcttgcaatc caaatacggc ggtactgtat tgcacagaca aagccgggtt tttctacaag
     4141 gttcaaatga gttttcagat ccacaaacaa taggtcagct agcgaatgaa attagtgtga
     4201 aatttaatgg accagtagag ctgacaatag aatttga
//
LOCUS       DASSIK010000158         3145 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_624341, whole genome shotgun sequence.
ACCESSION   DASSIK010000158 DASSIK010000000
VERSION     DASSIK010000158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3145)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3145)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3145
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_624341"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..255
                     /locus_tag="VFI64_02955"
     CDS             <1..255
                     /locus_tag="VFI64_02955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242278.1"
                     /translation="TRIAEDDATWWIRNGYTRGLALLEKSLCKELPEKTSILCAFDIS
                     KLKPKQLGTMKSVIGSHDYVIIEEPSHAVYKFGKPIFRYE"
     gene            269..1120
                     /locus_tag="VFI64_02960"
     CDS             269..1120
                     /locus_tag="VFI64_02960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242279.1"
                     /translation="MSNNNVPKIKKQPKKLYFDTKSVRNSIICVLIGSIGFTSVLIIL
                     SADDKKVIICDIIEPLAAAIAVGLSVLVIYRQKTDGLMGKAYTFLGVGLALFLIAEII
                     WSYYEIALEIENPFPSIADALWLIGYGPLLYFVFKMYRFFGASNSRTHQLFVSVAGAV
                     LLLYLISGISQTADFTTQRRIISFIISISYPTLDIILLIPAALIILNPMKGELTSMPW
                     IFLAILIMSVGDCAFAYSSNVIALQKMNWVWNLFFVTSYFVTSAGLFWHNRFFIHDIK
                     EKEGLKV"
     gene            complement(1288..1734)
                     /locus_tag="VFI64_02965"
     CDS             complement(1288..1734)
                     /locus_tag="VFI64_02965"
                     /inference="COORDINATES: protein motif:HMM:NF024304.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PPOX class F420-dependent oxidoreductase"
                     /protein_id="HET7242280.1"
                     /translation="MTKSEIKEFLMKDTFTGKLATVKKNGSPHVVPIWFVVEEVNSRN
                     RNKVGNIYFTTGRDSVKAQNIQRDSRVSICVDDQAPPFSFVLICGNAKVIPYRRKEVL
                     KWATKIAERYMGKKNAKAYGERNSGEEEVLVRIRPIKVIAGKDVAI"
     gene            complement(2056..2616)
                     /locus_tag="VFI64_02970"
     CDS             complement(2056..2616)
                     /locus_tag="VFI64_02970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242281.1"
                     /translation="MLVREPKVPHYHRMIKSAVIFAVLLAIFYYVTITITANSGFAET
                     GVGKGIFKVVVSIFGITKETGDIVAIVNVDGNSRIKTFDLNPMNSPTYSSINGEALKF
                     VATFPDVDVESGDIYKVCVVKLNDMHHYCQEHKNSSAKGSEFVDILLDKKIKRPDMEK
                     NNEVKNEVKNEVKIETKNILPNYSAK"
BASE COUNT          929 a          586 c          532 g         1098 t
ORIGIN      
        1 actagaattg cagaagatga tgcaacctgg tggataagaa atggttatac ccgcggtctc
       61 gctttgcttg agaaatcatt atgcaaggag ctccccgaaa aaacgtctat tttatgtgca
      121 ttcgatattt ctaaacttaa gccaaaacaa cttggtacga tgaagtcagt aattggatct
      181 catgattatg tcattatcga agaaccttct catgcagttt acaaatttgg taaaccaatc
      241 tttagatatg aatagacaaa attaggttat gtcaaacaat aacgtaccga aaataaaaaa
      301 acagccaaag aaactatatt ttgacaccaa gtcagtccgc aatagcatta tttgcgtttt
      361 gatcggctcg attggcttta ccagtgtctt gatcatactt tcagcggatg acaaaaaggt
      421 gattatttgt gatatcattg aaccacttgc cgccgctatc gcggtgggtc tttcagttct
      481 ggtcatttat cggcaaaaaa cagatgggct tatgggcaaa gcgtatactt ttcttggtgt
      541 ggggctagca ctgtttttaa ttgcagaaat aatctggagt tactatgaaa tcgcgctaga
      601 gatagaaaat ccttttcctt caatagcaga cgccttgtgg ctaattggtt atggaccact
      661 attgtatttt gtatttaaaa tgtaccgatt ttttggtgca tcaaattcca gaacccacca
      721 gttatttgta tctgtcgcag gtgctgtctt acttttatac ttaatcagcg gcatttcaca
      781 aaccgctgat tttacaactc aacggcgtat tatatcattt ataatttcta tttcttatcc
      841 cacattagat atcattctgt taatacctgc tgccctaatt attttgaatc ctatgaaagg
      901 tgaattgact tctatgcctt ggattttttt ggccatattg ataatgagcg taggagactg
      961 tgcctttgct tacagttcca atgttattgc tctgcaaaaa atgaattggg tatggaattt
     1021 attttttgtc actagctatt ttgttaccag tgccgggtta ttttggcaca atagattttt
     1081 tattcatgat atcaaagaaa aagaaggcct taaagtttga ggagatattc tcttctgcca
     1141 attagttgac gtgtgcaaat ttgatattca tatttgaatg tggacatctt caaactttct
     1201 ttctatgacg tggtatgacc taattagccg cgacgaagct cttattcttc ttgggtatgt
     1261 ttgtctttat taaaaatgga tacagcctca gatagcaaca tcttttcctg caattacttt
     1321 aattggtcta atccgtacta atacctcttc ttcgccactg tttctttcac cgtacgcctt
     1381 cgcatttttc tttcccatat aacgttctgc aattttggtt gcccatttca agacctcttt
     1441 tcgcctgtaa ggaattacct ttgcattacc acatattaaa acgaaggaaa agggcggtgc
     1501 ctgatcgtcc acacaaatac tcactctact atcgcgttga atattttgtg cctttacgga
     1561 gtcccgaccg gttgtaaaat agatgtttcc tactttgttt ctgtttctgc tgtttacttc
     1621 ttcgacaaca aaccaaattg gaacaacatg cggacttcca tttttcttaa ctgttgcaag
     1681 ttttcctgta aatgtatctt tcataagaaa ctctttaatt tcgcttttag tcatccgtgc
     1741 cattagaagt taattttcat tatcgaatat aactgtagtt aactaaagct aagctaaaag
     1801 atcccaatgg gagttgagcg aatatttcca agttgtccga atgtaattct agaattgtcg
     1861 caggactatg gtcgcaatat atttcagata ttttgacttg gccagaccaa aaatcaagat
     1921 ctgaaaaagt gttatcattt ttctgtagtt ccatgggcta ctaatgagat tacgcatgaa
     1981 caaattcaaa ttcaaggatt gtacttgaca gtaaagacgc caaatgagga gtgttgtacg
     2041 ttactaataa attatttact tagcagagta gttaggcaat atattcttgg tttcaatctt
     2101 tacctcattc tttacctcat tctttacctc attgtttttt tccatatccg gtctcttaat
     2161 ttttttgtcc agtaatatat cgacaaattc tgaccctttc gcagacgaat ttttatgttc
     2221 ttgacagtag tgatgcatgt catttaattt tactacgcat accttgtaaa tatctcccga
     2281 ctctacatcg acgtcgggaa atgtagcaac aaacttgagg gcctctccgt ttattgaact
     2341 ataagtaggt gaattcatcg gatttaagtc aaaagtttta attcttgaat ttccatcaac
     2401 attaacaata gctacaatgt cacctgtttc ttttgtaata ccaaatattg aaacaactac
     2461 tttgaatata cctttgccta ctccagtttc agcaaaacca ctatttgctg taatagttat
     2521 tgtcacgtag taaaatatag caagcaagac tgcaaatatt actgccgact ttatcattct
     2581 gtggtaatgt ggaacctttg gttctctcac aagcacgtat taattgtcca ttttatctat
     2641 attcggatag atttactata ctgaatctac aaaattgtgt gatataagat tcttcataaa
     2701 aaaacaaggc gttaggaatt acctcaacga aattattttt actctagctt gttcagactt
     2761 taataatccc tttggtgaat actagtatat ctgccggaag atctaaagtt gtaggtaaaa
     2821 taaaaaggac accgaataga aacctaagca ggacaacaat tatgattaac tataattact
     2881 aatgcgatat tgatcagagt gtttaagatc atatctatcc gctattaggg ttaaaaagtt
     2941 atatcgattg tttgtctatt gtccttaggg ttgtttatta cattcttcat gataaaagtt
     3001 agacaaacaa atttatctaa ttgtttatgt gcgacaattc ccgagcctta actagaagat
     3061 ttatcttatg cttacagatc ctcgggcaaa tgtcgctatc gcaccattac ttaacttaac
     3121 gtaaacttcc agtaagtatc tgcca
//
LOCUS       DASSIK010000159         2034 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_825068, whole genome shotgun sequence.
ACCESSION   DASSIK010000159 DASSIK010000000
VERSION     DASSIK010000159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2034)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2034)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2034
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_825068"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..515
                     /locus_tag="VFI64_02975"
     CDS             <1..515
                     /locus_tag="VFI64_02975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242282.1"
                     /translation="RKIGLSVIFSLGEETVTINTPFLENLCLYTARPNLKLRKLMKLD
                     SPADIIEAIADGSSLDLFNSIARGASGSEDLKNSKGLTRKQYYSRTGKLLRVGLIKRN
                     KGKFSLTALGTVVYHAQMEIENAAKNYWKLKAVDSIQSSAEIGEHERVKLIRTILDDS
                     TIENVLVKNQ"
     gene            774..1781
                     /locus_tag="VFI64_02980"
     CDS             774..1781
                     /locus_tag="VFI64_02980"
                     /inference="COORDINATES: protein motif:HMM:NF013226.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiA family prenyltransferase"
                     /protein_id="HET7242283.1"
                     /translation="MAQVVDYSPSHIIIKNDVLRSVRDFTVSQLLLLNYRKRWGMIYA
                     FATLAGIFCLPNAVFDLTQNASYIVSVVLNSVTLPLGSFMIIVGMYVLNDLVDSNLDR
                     ANGKDRPIATGKVSKTQAWVFVTMTNTLGILFCLIGNEMMGVVISLGLVSIGIMYSAP
                     KISLKDRFVVKTLAIAVAMMLCITLGATSSWSLNVTTSLNIPYNPIFLTIYIASMLGG
                     MVFITSPFNDVADVQGDKAAGRKTIPIVIGRENTVKVAIYIAASMAGVSWIVFTMMHT
                     GWIMPLLVSAVSGITIINMYRTLRRLDDRNYVRKQHKKSMPLHLLLQLSLVVGALLFW
                     L"
BASE COUNT          649 a          348 c          423 g          614 t
ORIGIN      
        1 tcagaaaaat cgggttatct gtgatttttt cgttaggaga ggaaactgtt accataaata
       61 ctccattttt ggagaactta tgtctttata ctgcacgccc taatttaaaa ctacgaaaat
      121 taatgaagtt agattcgcct gcagatatca tagaagcaat tgcggacggt agttcattag
      181 atctattcaa ttccattgca agaggtgcta gtggaagtga ggaccttaaa aactctaagg
      241 gacttacaag gaaacaatac tattcaagaa ctggtaagtt attgcgggtc gggctcatta
      301 agagaaacaa aggaaaattt tctctaactg ccttgggtac tgttgtttat catgctcaaa
      361 tggaaataga aaatgcagca aagaactatt ggaagctcaa agcagttgat tcgattcaat
      421 cttccgctga aataggtgaa catgagcgcg tgaagctcat tagaacaatt ttagatgact
      481 caacaataga gaatgtactt gtaaaaaatc aataatcgaa taattcgacg tagcatttac
      541 gtcactttaa ttatttttgt agtttttcgg aggataattt catcctcaga ttagttgata
      601 gaattacttt cagatcgaat tagtcagaag tagtcttaac gtgctaatgc actaggtttt
      661 tctcctgagt tggagtagga atcaaaaata taaggcacat acgtgaattt tagccaaatt
      721 cagccaaatt ctgcgccaaa gacaataaaa aggacaaagg agagcggctc aatatggctc
      781 aagttgtcga ctactctcca tcgcacataa tcataaagaa tgacgttctt agaagcgtta
      841 gggactttac tgtatcgcag ttacttttat taaattatcg aaagagatgg gggatgattt
      901 acgcctttgc taccctggca ggtatctttt gtcttcctaa tgcagtattt gatctaactc
      961 agaatgccag ctatatcgtt agcgtagttt taaactctgt aactctcccg cttggttctt
     1021 tcatgattat agtcggtatg tacgtgttga acgatttagt agactctaac ctggatcgtg
     1081 ctaacggaaa ggacagacca attgcaacag gaaaagtatc aaaaactcag gcatgggtat
     1141 ttgttaccat gacaaatacc ttgggaatat tgttttgttt aattggcaac gaaatgatgg
     1201 gcgttgttat ttccctcgga ttagtatcaa taggtatcat gtattctgct ccaaagatct
     1261 cacttaagga tcgttttgta gtaaaaacgc ttgcaattgc agtagccatg atgctgtgta
     1321 tcacactcgg ggccacatca tcgtggtcat tgaacgtcac aactagtttg aatattcctt
     1381 ataatccaat tttccttact atctatattg cctcgatgct cggaggaatg gttttcataa
     1441 cctcaccgtt taacgatgtt gcagatgtcc aaggcgacaa ggccgcagga cgaaaaacaa
     1501 ttccgatagt aatagggcga gaaaatacag ttaaggtagc tatatacatc gctgcaagca
     1561 tggccggtgt atcatggatt gtttttacaa tgatgcatac aggatggatt atgccattat
     1621 tagttagtgc agtgtcaggg ataacaatca taaatatgta tagaaccctg aggagattgg
     1681 acgatcgtaa ctatgtgaga aagcagcata aaaaatctat gccccttcat ttgttactgc
     1741 aactaagtct tgttgtaggt gcgttacttt tctggctatg agaagccaaa aagtgagtga
     1801 taactaagac gcaagttaca gcgaaactga gtttagtaaa aatataagtg tccttgtcct
     1861 tcaagaatac accagggcat cagtgagtgg tttagtaacg taacgttctt tgataaggtg
     1921 atcttagttg actaacacaa tagaggaaat tgatgaaaag ttatcgatga cgagtagcta
     1981 gtataattaa tagatgttga aaatatcaat cattcaatcc tgcgcctgat aatt
//
LOCUS       DASSIK010000160         3354 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1336053, whole genome shotgun sequence.
ACCESSION   DASSIK010000160 DASSIK010000000
VERSION     DASSIK010000160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3354)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3354)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3354
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1336053"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..486
                     /locus_tag="VFI64_02985"
     CDS             <1..486
                     /locus_tag="VFI64_02985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242284.1"
                     /translation="VSAYINDYYGLIKTPNSIMYDSSENSNSISDNFDVRKSLLTKAI
                     FSHSNPEGEIPVIEAITVSPNPSTKGDKVIINIAVAYKNSSGLRYSWSEVGHLVVSLN
                     GADTPSPSFIAPHVRGETSVTFCVTVTNEIGRTSYGNITAIIKPSNTEAKMTSIGFIA
                     H"
     gene            complement(736..2970)
                     /locus_tag="VFI64_02990"
     CDS             complement(736..2970)
                     /locus_tag="VFI64_02990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018193003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDC48 family AAA ATPase"
                     /protein_id="HET7242285.1"
                     /translation="MSSKNNESNENIVSLRVAEAEQSDVGRKIARIDPDVAQQLRISA
                     GDALELSSLGKKTTVLHWPAKERDRGKGLVRIDGNLRNRLDVGINDSVEIKKVQAKNA
                     QTVTLAPTEPLRIVGAEGYLGEYLLGSLLSTGDTIPISIMGQRVDLVVISTKPSGPVL
                     ITDSTEMIVSEESAKAVQVAKEGGVPSISYEDIGGVRNEISRVREMIELPLRHPELFK
                     RLGVEAPKGVLLYGPPGTGKTLLAKAVAHETNANFYTIGGPEIMSKYYGESEEKLRNI
                     FKNAEEKAPSIIFIDEIDSIAPKREEVTGEVERRIVAQLLSLMDGMSTRGKVVVIGAT
                     NRINAIDPALRRPGRFDREIEIGVPDKEGRLEILQIHTRGMPLDKDVDLEKIASMSHG
                     FVGADLQSLAKEAAIRALRKVLPEIDLTAESIPSDTLRKIIVTMDDFTNVLQEMEPSA
                     LREVFVEVPNVTWNDIGGLSDVKQELQEAVEWPLKYQSLFTHSDAVPPKGILLYGPPG
                     TGKTLIAKAAAHESEANFISIKGPELLSKWVGESEKGVREVFRKARGAAPCIVFFDEI
                     DAIAPTRGGAGSDSHVTERLISQLLTELDGLEILTNVVIIAATNRPDIIDPALLRPGR
                     FDRLLYVPPPDKQSRVHVLRIHTKKKPLADDVKIDVLADQTEGYTGADIAALASAAVM
                     LALREHVAKYKDPKEAERTKEELKIHMSHFEEAMKKIRPLSKQEIDMYKNVSEQFGKP
                     NIAK"
BASE COUNT          894 a          754 c          622 g         1084 t
ORIGIN      
        1 gtatcggcct acatcaacga ttactatggc ctgattaaaa ctcctaattc aatcatgtat
       61 gatagttccg agaatagtaa ctccataagt gataactttg acgtaaggaa atccttactg
      121 acaaaggcaa tctttagcca tagcaatcct gaaggcgaaa tacctgtcat tgaggcaatt
      181 actgttagcc ctaatccctc tacaaagggc gataaagtta tcatcaatat tgccgtagcc
      241 tacaaaaact cgtcgggctt aaggtactcg tggagtgaag tgggtcatct agtagtctcg
      301 ttaaacggtg ctgatacacc atcaccatca ttcatcgctc cccatgtcag aggagaaaca
      361 agtgttacct tttgtgtaac agtaactaac gagataggtc gtaccagtta tggaaatatt
      421 accgccataa tcaaaccttc aaatacagag gcaaaaatga cctcaatagg atttatagcg
      481 cattgaactc taacaataca cctctgccat aatctttcaa cataccttct atccaaatta
      541 catggatcca caaaatacaa aaaatgagag ggcctgctgt ggaatctaaa gtttgttaac
      601 ccgtatactg actgtgacaa tttataggga gatccaaatt gatgtccaaa gtggtaatac
      661 tacgcaacag aacgttcagt tgcaggtatg taacccatgc tgttaccact aattgactct
      721 tttctctaat tgtatttatt tcgcgatatt tggttttcca aactgttcgg atacgttttt
      781 gtacatatca atttcctgtt tcgaaagtgg ccttatcttc ttcattgcct cttcaaaatg
      841 actcatatgt atctttaatt cttccttagt gcgctctgcc tcttttggat ctttgtactt
      901 tgcaacatgt tctctgaggg caagcattac agcagctgac gctagggctg cgatgtctgc
      961 tccggtatat ccttcagtct ggtctgccag cacatcaatt tttacgtcat cagccaaagg
     1021 ctttttcttt gtatgaattc tgaggacgtg cactcttgat tgtttgtctg gtggaggaac
     1081 atacaatagc ctatcaaatc tccctggcct caataatgct ggatctatga tatcgggcct
     1141 attcgttgct gctattatca caacattggt cagtatctct aagccatcaa gttctgtcaa
     1201 taattggctg attaatcttt ccgtaacatg tgaatcactt cctgcacccc ctctggtcgg
     1261 ggctatcgca tcaatttcat cgaagaatac aatgcatggt gctgcccctc ttgctttcct
     1321 gaagacttcc cgtacacctt tttctgattc acccacccat tttgagagaa gctctggacc
     1381 ttttatactg atgaaatttg cttcgctttc gtgcgcagct gctttggcta tgagagtctt
     1441 acctgtgcct ggagggccat acagcagtat cccttttggt ggaactgcat cagaatgagt
     1501 aaacagggat tggtacttta gtggccattc tactgcttct tggagctcct gttttacatc
     1561 agaaaggcct ccgatatcat tccaagtaac attaggtacc tccacaaaga cttcacgtaa
     1621 ggcagatggc tccatttcct ggagtacatt cgtgaaatcg tccatcgtaa ctattatctt
     1681 tcgcagtgta tctgaaggta tgctttctgc tgtaaggtca atctcaggca gtacctttct
     1741 taatgcacgt atggcagctt cttttgcgag ggattgaagg tcagctccta cgaaaccatg
     1801 agacatactt gcaatctttt cgagatcaac atctttatcc aatggcatac ccctggtatg
     1861 aatttggaga atctcaagtc tgccttcttt gtcaggtacg cctatctcaa tttctctatc
     1921 aaatctacca ggcctcctaa gagcaggatc tattgcgttg attctatttg ttgcacctat
     1981 gacaacaact ttacctctgg tggacattcc atccattagt gagagaagct gtgcaactat
     2041 tcttctttct acctcacctg tgacctcctc cctttttggg gcgatagaat caatctcatc
     2101 tataaagata attgaaggtg ccttttcttc agcgttcttg aatatgttcc tcagtttctc
     2161 ttcggattcg ccatagtatt tgctcataat ctcaggtccc cctattgtgt aaaagttcgc
     2221 gttagtttca tgagcgacag cctttgcaag aagtgtcttg cctgttccgg gaggtccata
     2281 taacaataca ccttttggcg cttccacgcc aagtcttttg aaaagctcag gatgccttag
     2341 tggaagttca atcatttctc gtacgcggga gatttcattt cttaccccac caatatcttc
     2401 gtatgaaata gatggaactc cgccttcctt tgcaacttga actgcttttg cactttcttc
     2461 tgacactatc atttctgtag agtccgtaat caaaactgga ccagatggct ttgtagagat
     2521 cacgaccaga tcgactcttt gacccataat acttattgga atagtgtcgc ctgtactcag
     2581 aaggcttcct aaaagatact ctccaaggta tccttctgca cccacaattc taaggggttc
     2641 agtaggggcg agagtaacag tctgagcatt tttggcctga acctttttga tctcaacaga
     2701 gtcattaatt cctacatcaa gtctgtttcg aagattcccg tctattctta caagtccctt
     2761 tcctctatcc ctttcttttg ctggccagtg cagcacagtg gtttttttcc caagtgacga
     2821 aagttccagt gcgtcacctg ccgatatcct taattgttgc gcaacgtctg gatcgatacg
     2881 tgcaattttt cttcccacgt cagactgctc tgcttctgcg acccttagac ttactatatt
     2941 ttcgttagat tcattgtttt tactactcaa aatattctgc tccgatacat tattctcttt
     3001 aacgaaatta tgctatttga gaataccatg ttcccatgtt aaatttaaag catataaaac
     3061 ttttaaaaag atgcttgttt tttagggttg gttttacaga ttatatataa attgtaaaaa
     3121 cgtcgtatta tccttcattg ttattcatga aatgcgagag aatcttaaaa atctttgcaa
     3181 aagttaggaa actgtggtga caaacagaca aatatagagc acagaggcat attttgtgag
     3241 actttgtcta cggtgccatt taattattaa tccggcctag attcaagaaa taatgggaaa
     3301 atattgttca aggccaacaa tcggaatgga aatacgtgaa tttttaaaat tata
//
LOCUS       DASSIK010000161         5124 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_525581, whole genome shotgun sequence.
ACCESSION   DASSIK010000161 DASSIK010000000
VERSION     DASSIK010000161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5124)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5124)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5124
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_525581"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1177)
                     /locus_tag="VFI64_02995"
     CDS             complement(<1..1177)
                     /locus_tag="VFI64_02995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HET7242286.1"
                     /translation="MKVSNRTSEVEYAIRDIIVHAREYEKSGRQIIYLNIGDPVKYDF
                     KTPDHIKQALIDSVSHDFNYYTDSEGLYELREAIVEKESRKGLSITAEDVLVTNGVSE
                     GLDMTMASIVEPNTEVLMPGPYYPPYASYVKFYGGRPVEFKLTPDGKPDLEDLISKIT
                     PRTRALCIISPNNPTGEVFDHKSLKQLVDIAAEHSLYIICDEIYDSLVFDGEFTGIGK
                     VAKDSPVILLNGFSKVYLMTGWRCGYICMNSNCSKLENIRNNIPKLARVRISTNLPVQ
                     RAAIAALRGPQDHIPMMVSKLRRRRDLVVKRLNQISSISCNVPKGAFYAFPKINLSSR
                     WKNDKHFVLDFLNETGVLTVHGSGFGSNFGTDHFRIVYLPQEQILDEAMDKLEHFING
                     "
     gene            1382..1456
                     /locus_tag="VFI64_03000"
     tRNA            1382..1456
                     /locus_tag="VFI64_03000"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1417..1419,aa:Arg,seq:tcg)
     gene            complement(1589..2788)
                     /gene="radA"
                     /locus_tag="VFI64_03005"
     CDS             complement(1589..2788)
                     /gene="radA"
                     /locus_tag="VFI64_03005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair and recombination protein RadA"
                     /protein_id="HET7242287.1"
                     /translation="MNSTNHSQVEMDNTFKKGKADNIVSPDDKVPENLSSETRINVGE
                     DEESSKTEATELAGTTELLDLEIQDIEGIGPSTTKKLREAGILSVMDLAVAGVEDLAV
                     DINSTKDSAASFIMAAQKLLRESNILEKEFITAEAALRKRRSLLRCSTGSGVLDELFL
                     GGIETQAVTEFYGEFGSGKSQICHTLCITAGQPVESGGLDSGVIYVDTEGTFRPERLE
                     QIARERGVDPLHALKNVAVCKVYNSSHLELIVKNLGKYVDDYKAKLVIIDSIISLHRA
                     EFAGRGTLADRQQRLNSIMHKLLRIAEIYNIALVVTNQVQSAPDTFFGDPTRPTGGNV
                     IGHASTYRVYLKKSGENRIARMVDSPYHPYGDVRFTVNEKGVDDLEEELKKGSKRGKV
                     GVSKEDN"
     gene            complement(3139..4440)
                     /locus_tag="VFI64_03010"
     CDS             complement(3139..4440)
                     /locus_tag="VFI64_03010"
                     /inference="COORDINATES: protein motif:HMM:NF014218.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytosine permease"
                     /protein_id="HET7242288.1"
                     /translation="MNFIKNSVQWGIDPVPRHNRLLRGREFFVLWSSLGVGLLVFSAG
                     SFLSDASFVDAFLAILIGSVGGSILLALAGKIGSDNAIPSLVSMRPSFGIRGSYLPAA
                     LNVVQLLGWTIFEITIMSTAAHILVGKIIPFYVWTIIFGSIITLLGLIGPLAVVRQWL
                     EKFAIWAVYASSIIIIITLLLSDKLSILLSTHGNGMSFFTALDIVIAMPVSWMPLAAD
                     YNRFAKNSNSAFKATMIGFAMTNVLFYLGGVLLGTSDIIIIIGAIQSMLFGFLMLVLI
                     VDETDNTFADVYSAAVSSQNIFPKLDQRVLIIGFTAFGVMMANIIPIAEYQTFLLLIG
                     AVFVPLFGVVLSDYYILKRFHYSHDALFDKNTNKIGYPAFVAWSLGVLVYYLLSSLSP
                     IYMPDLPQIGATIPSLIVSSAVYMAMMYSISRFRIKRVASQ"
     gene            complement(4932..>5124)
                     /locus_tag="VFI64_03015"
     CDS             complement(4932..>5124)
                     /locus_tag="VFI64_03015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DapH/DapD/GlmU-related protein"
                     /protein_id="HET7242289.1"
                     /translation="DGAIIGGRSVFKPGVHVGRNSVIGMGSVVTKDVPPETVVMGHPA
                     TVRYSRDEYETKKKKWNVS"
BASE COUNT         1532 a         1049 c          909 g         1634 t
ORIGIN      
        1 gtccattaat aaaatgctct aacttgtcca ttgcttcgtc aagaatttgc tcttgtggaa
       61 gataaactat cctgaaatga tcggtaccaa aattggatcc aaatcctgaa ccatggactg
      121 tgagaactcc agtctcattt aaaaaatcca ggacaaaatg tttatcattt ttccagcgag
      181 atgagagatt gatctttggg aatgcataga acgccccttt aggcacgttg caggaaatgc
      241 tactaatttg gttcaggcgt ttgactacta gatctcttct tctgcgtaat ttgcttacca
      301 tcattgggat atgatcctga ggacccctaa gcgctgcaat agcagctctt tgcacaggca
      361 aattagttga aatacgtact ctagctaatt ttggtatgtt attcctaatg ttctctaatt
      421 ttgaacagtt actgttcatg catatgtatc cacagcgcca gccggtcatc aaatatactt
      481 tcgagaaccc attaagcaaa atcactggcg agtcctttgc cactttacct attccggtaa
      541 actctccatc aaagactaaa ctgtcatata tttcgtcaca aataatatac agcgagtgtt
      601 ccgctgctat atcgactagc tgtttaagac ttttgtgatc aaaaacctca ccggtgggat
      661 tgtttggact gattatgcat aaagctcttg tacgcggcgt gatctttgat ataaggtctt
      721 ccaagtctgg cttaccgtca ggggtcagct taaattcgac cggtctgccc ccgtagaatt
      781 tgacatacga ggcatatggt ggataatatg gtcccggcat gagaacctct gtattgggtt
      841 ccacaataga tgccattgtc atatccaaac cttctgaaac gccgttggtt accaacacgt
      901 cttcagctgt aattgataac cccttccgcg attctttttc aactatggct tcccgaagtt
      961 cataaagtcc ctctgaatcc gtatagtaat tgaaatcatg tgaaactgaa tctattaaag
     1021 cctgtttaat atgatccgga gtcttgaaat catactttac tgggtctcct atattgagat
     1081 aaattatttg tcttccagat ttttcatatt ctctggcatg tacgatgata tcacgaatag
     1141 cgtattcgac ttcacttgtc ctattggata ctttcaatta atgtaatcta aacaagaatc
     1201 tctgagttaa attgttatgc ataaattatg attatgtcag tagaaatgta atagcatacc
     1261 atgttgcaat aacattctac tcacttgtat tattgatctt aaattaagga tctgacattt
     1321 gatcattttc attccatcag gtcaattgat atagaacctc tcttgaatat cctcgatgaa
     1381 cgggctcgta gcgtagccag gatatcgcgg cggtcttcgg aaccgcagat cgtgggatcg
     1441 aagcccaccg ggcccgctga ctattcagag aatctagaat gaaaaacaag ggtaatctgt
     1501 cagcctatcc ttgggaggaa aggatttacc ctatttaact acctcgttat ccaatatttc
     1561 agtactacaa attccaatag atcaagtatt aattatcttc tttagatact cctacttttc
     1621 ctctcttgga acctttctta agctcttctt cgagatcatc tactcccttt tcattaacgg
     1681 tgaatctaac atctccgtat ggatgatatg gtgaatcgac catccttgca attctattct
     1741 caccagattt cttcaaatat actctatatg tcgatgcatg tcctattaca ttgccaccgg
     1801 tgggtctagt tggatcacca aagaatgtat ctggagcaga ttggacctgg ttggtgacca
     1861 ctaatgctat attgtaaatt tcagctattc taagaagctt gtgcatgata gaattaagtc
     1921 tttgttgtct atcagcaagt gttccccttc cagcgaactc agctctatgc aatgaaatta
     1981 tgctgtcaat aataactaat tttgctttat aatcatcaac atatttacct aggttcttga
     2041 ctatcaactc cagatgtgaa ctgttataga ctttacatac tgcaacattt tttaatgcat
     2101 gtaatgggtc tacacctctt tctcgggcta tctgctctaa tctttcaggt ctaaatgtac
     2161 cttcagtgtc gacatatatt acaccactgt caagtccacc tgattctact ggttgtccag
     2221 cagttataca taaagtgtga cagatctgtg atttccctga tccgaattct ccataaaatt
     2281 ccgtaactgc ttgggtttct attcctccta gaaaaagctc atctaaaact ccggaaccag
     2341 tagaacatct taataacgat cttcttttcc taagcgctgc ttcggctgta atgaattctt
     2401 tctctaaaat atttgattct cttaatagct tttgcgctgc cattatgaat gatgcagcgc
     2461 tatcctttgt ggaattgata tctacagcta ggtcttcaac accagccact gctaaatcca
     2521 taactgacaa aattccagcc tcccgcagct tcttagtagt agatggacct ataccttcaa
     2581 tatcttgaat ttccaagtcc agaagttctg tcgtaccggc caactcggtg gcttctgtct
     2641 ttgatgattc ttcatcctca ccaacgttaa ttcttgtctc tgaggacaaa ttttctggaa
     2701 ctttgtcatc agggctgact atattgtctg ctttaccttt tttgaacgta ttgtccattt
     2761 ctacctgact gtggttggtt gaattcacag attttttatc gcccatatta taaaatgatg
     2821 ttaagtttca atgcatttaa gacttagggc accaatatgg gagcggggga gggcatacct
     2881 ttcttttatt ttacttatga tatgtctaat tgactacttg acattgtaca cactccaaat
     2941 acaaataagc aatttgtttc ttatatcata tccgtatata gagtaaaagt agaaggtgtt
     3001 accatcaaaa gtcttcagat tttgcatatt ttgaaaaagc cggtgaaaaa ttaccatttt
     3061 cagttatcct cgctaaatac taggatccta agcttgtcga ttagactcgt tagaattgca
     3121 ttaacttaaa tttgacgctc attgtgatgc cactcttttt attctaaacc gagagataga
     3181 atacatcatc gccatataga ctgctgaaga gacaattagg cttggaattg tggcccctat
     3241 ttgtggcaaa tctggcatat agattggtga caaagatgac agaagatagt atactaatac
     3301 accgagcgac catgctacaa atgcaggata acctatcttg tttgtattct tatcaaaaag
     3361 agcatcatga ctgtagtgaa accgttttag aatatagtaa tcagataata ctactccgaa
     3421 taatggaaca aacaccgctc ctatcagcag gagaaatgtt tggtattctg cgattggaat
     3481 gatgttggcc atcataacac caaatgctgt aaatccaatg atcaaaactc tttgatcaag
     3541 ttttggaaat atgttctgac ttgatactgc ggccgaatat acgtctgcga atgtattatc
     3601 tgtttcatcc actataagta ccagcataag gaagccaaac aacattgatt ggattgcacc
     3661 aattataata ataatatcag atgtgcctag aaggacacca cctaaataaa aaagaacatt
     3721 agtcattgca aaacctatca ttgtcgcctt aaaggcgctg ttactattct ttgcaaatct
     3781 gttgtaatca gcagcaagtg gcatccaaga cacgggcatt gctatcacta tatcaagtgc
     3841 agtgaagaaa gacatgccat taccatgggt tgataacaat attgataatt tgtctgacaa
     3901 taacaatgta ataataatta tgattgatga tgcatagact gcccagatag caaatttttc
     3961 cagccattgt cgaacaacgg ctagaggacc gattagtccc agaagagtta tgattgagcc
     4021 aaatataata gtccaaacat aaaaaggaat tatcttgcca actagtatat gagcagcagt
     4081 ggacattatt gttatctcaa aaatggtcca tcctagcagc tgcacgacat tcaatgctgc
     4141 ggggaggtag gaacctcgaa taccaaatga tggcctcata ctaaccagcg aggggattgc
     4201 gttatcgcta ccaatcttcc cagctaaagc cagtagaata gaccctccaa cagatcctat
     4261 taaaattgca agaaacgcat cgacgaagct tgcatcagaa agaaatgaac cagcagaaaa
     4321 aactaacaat cctaccccaa ggctggacca aagaacaaag aattccctgc ctctaagtaa
     4381 cctattatgg cggggtactg gatcaatgcc ccactggaca gaattcttga tgaaattcat
     4441 attattggac tttctattct aactgaggta aattaaatgg tatgtaagtg tatgcttgcg
     4501 tgtaagaatg gctcttgtat tactcattgt attactcact agaattttct gtctattacc
     4561 agattgagaa tacacatcat gtttatgatt atggttgact ttttaaatcg gctgtggtgt
     4621 tattacatcg ccgtagagta agatgtgcag gttactgttc ttcttcaatt gcaaaatatt
     4681 agatattaaa atcaacacaa ttataatctt aacaaaatat gcggatttgt ttcttgttcc
     4741 ataatttatt tgataaaaat gatatcaaac tagagcaaaa aattgtgaat gacgggaatt
     4801 cttgtggcaa atgttgacga gaataagaat gaatagtaaa ttatgttatg tttctatatt
     4861 aggatactct ttaacctgaa gttcttttga tccaactttg aaaacagtac cgatagtata
     4921 attttagtta gttacgatac attccatttc tttttcttag tttcatattc atccctggaa
     4981 tacctcacag tagcgggatg tcccattacg accgtttctg gtggcacatc tttagtcact
     5041 acagaaccca ttccaatcac gctatttcga ccaacatgaa ctcctggttt gaagacagat
     5101 ctccctccga taattgcacc atct
//
LOCUS       DASSIK010000162         2486 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_825467, whole genome shotgun sequence.
ACCESSION   DASSIK010000162 DASSIK010000000
VERSION     DASSIK010000162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2486)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2486)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2486
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_825467"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(366..1073)
                     /locus_tag="VFI64_03020"
     CDS             complement(366..1073)
                     /locus_tag="VFI64_03020"
                     /inference="COORDINATES: protein motif:HMM:NF014625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIG-L family deacetylase"
                     /protein_id="HET7242290.1"
                     /translation="MNILAIGAHPDDIEIGCGGMLIKAVRKGHSVYLYNITQGEKAGD
                     PQQRAAELRRTARYIGAKGLYIDRFPDTQLSLTSDLINHIESCVSLCKPDLVITHPMT
                     DTHHDHRVVAEASIEAGRNVSSMLSYEMPLTKGFDPHIYYDISDSMDAKLELLSLFQS
                     QSHKMFLESKAIRGLAQYRALQSRLGSDVSYVESFQIVKVALDGNFAFMNNASRIDAK
                     EPLATHNPQEMCKCIYV"
     gene            1327..1476
                     /locus_tag="VFI64_03025"
     CDS             1327..1476
                     /locus_tag="VFI64_03025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242291.1"
                     /translation="MELIEMIGWVVAGFVPMLGGLELANRKLRHREKIVLRTEMRRGE
                     YLSGI"
     gene            1531..2022
                     /locus_tag="VFI64_03030"
     CDS             1531..2022
                     /locus_tag="VFI64_03030"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HET7242292.1"
                     /translation="MEDHQKQIQKSDGNVKLLYEPEIKTEEGNQNPILVQADRERITQ
                     VVWNLLNNVLKFTEHGTISISTRVTDREVIVGVKDTGEGIDPKIRPHSSKFATGSSKG
                     TGLGLYISKSIVEAHGGRMWVEDNIDRRHGATFYFSLPVLDIHADHPQINRKQNNNIR
                     RLV"
     gene            complement(2109..2318)
                     /locus_tag="VFI64_03035"
     CDS             complement(2109..2318)
                     /locus_tag="VFI64_03035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242293.1"
                     /translation="MGESKGIKFTISSNGVSKTKKFDMILQITSMIEIITQYHKYHRV
                     GGLITISFGESNRDIDTKTLKSNMQ"
BASE COUNT          785 a          469 c          489 g          743 t
ORIGIN      
        1 caccatgaat taaataccat ttagtatcaa tcataatggt gagtcaggta tagtcgaact
       61 aaaatcccga gtgaactgat taaggaattt ccttcgatcg gctacgcgcg cgcgtttttc
      121 ctcagatcaa tacccttcaa aagagtaagt caagatgatt gatttcttta ctgtaataca
      181 gatagatctt cccgcgttca accgcgtttc tcaggaaatg caatatatca tagaaaaact
      241 gaatccctat tattagtagc aggttcatca ggctttttat cattatatca atttcatttt
      301 tcacatgtat attctacgaa aatattgtga tcgtcattga tgaagttatg attccggcag
      361 aggacttaaa cataaataca cttacacatt tcttgcggat tgtgagtagc caaaggctct
      421 tttgcatcaa tccgagaagc attattcatg aatgcgaaat tcccgtccaa agccactttg
      481 acaatctgga aagactccac ataagataca tctgagccca acctactttg aagtgctcta
      541 tactgtgcca aacccctgat ggcctttgat tctaaaaaca tcttgtgact ctgtgattga
      601 aatagactca gcaattcaag ttttgcatcc atagagtccg atatatcgta gtatatgtga
      661 ggatcaaaac cttttgtgag aggcatttcg tatgataaca tacttgagac atttcttcca
      721 gcttctatgc tggcttcagc caccactcga tggtcatgat gagtgtcagt cattggatgt
      781 gtaattacca agtcaggctt acacagagag acacatgact caatatgatt gatcaaatcg
      841 ctcgtaagag ataattgggt gtcaggaaat ctgtcaatgt aaagcccttt ggcaccgatg
      901 tatcttgcag ttcttctcaa ctctgctgct ctttgttgag gatcgcctgc cttttcaccc
      961 tgagttatat tgtataaata aacagaatga cctttcctaa cggcttttat caacataccg
     1021 ccacacccaa tttcaatatc atctggatgt gcacctattg ccaaaatatt catacttaca
     1081 attgatgaaa aaagatacta atagtttcca gggaagccag tcattaatta tggaaataac
     1141 agtcaatgtc cctcgtattc gtgttatgtg gcaagaattc catcgttttc cctagatgta
     1201 agatcattcc ctttaatagg gaaaatccaa aatccaggag gctaggcgtc ctgaagaagc
     1261 agcaatggga aattccacgt tgccaacagt tcttgataaa ctgtgtatgg ttgccaatat
     1321 ctcactatgg aattaatcga aatgattgga tgggtagtag cgggctttgt cccaatgttg
     1381 ggggggctgg agcttgccaa caggaaactg agacacaggg agaaaatagt ccttaggacc
     1441 gaaatgagac gaggcgaata cttaagtggc atatgaaagc gcaacagacg cataaaggca
     1501 attgatctaa atggtctaac actaagtata gtggaagatc atcaaaaaca gatacaaaaa
     1561 tcagacggta atgtaaagtt actatatgaa cccgagataa aaactgaaga aggaaaccag
     1621 aacccgattt tagtacaagc agatagggaa aggataacac aagttgtttg gaatttatta
     1681 aataatgtgc tgaagtttac tgaacatgga acgatatcta tatctaccag agtaacagat
     1741 cgggaggtaa ttgttggtgt aaaggatacc ggtgaaggaa tagatccaaa aatacggccc
     1801 cactcttcaa aattcgctac aggttcttcc aaaggtactg gattaggttt gtatatttcc
     1861 aaaagtatag ttgaagctca tggtggtagg atgtgggtag aagataacat tgacagaagg
     1921 catggagcca ctttttattt cagtttgcct gtccttgata tacatgcgga tcaccctcag
     1981 attaacagga aacaaaataa taacattaga cggttggtct aatatctgca agcacatcca
     2041 atcaaagcaa ttattcatgt gtcggcagtc atctgtagat gatttgattt tgaccattca
     2101 atggaccact attgcatatt cgacttgagt gtcttcgtat ctatatcccg attagattct
     2161 ccgaaagata tagtgataag acctcctact ctgtggtatt tatgatactg agttattatt
     2221 tctatcatgc ttgtaatctg caatatcatg tcgaattttt tcgtctttga tactccattg
     2281 gatgatatcg taaactttat ccctttgctt tcgcccaata cttaagcggt tttagtcaac
     2341 tttcaacggt aaaaaggaag gatgttagtt aatcttgttt gaatgattag aaagagaggg
     2401 tatcgccagg atctatacaa aaatccaaac ttcccgtttt taatgacctt cagtttttgc
     2461 atgaaattgg gaaaagcgat ataatt
//
LOCUS       DASSIK010000163         3112 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_34077, whole genome shotgun sequence.
ACCESSION   DASSIK010000163 DASSIK010000000
VERSION     DASSIK010000163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3112)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3112)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3112
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_34077"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(292..1113)
                     /locus_tag="VFI64_03040"
     CDS             complement(292..1113)
                     /locus_tag="VFI64_03040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242294.1"
                     /translation="MIFSNSAIEQSYSIYIDQEAAAAKLSGLDKFGIKEIYPTKEGGR
                     EWYMNMSKPLDDNAFSLTFNQNITRQSDGGWRISGPAVRMNVNTPPGLPQWKNVEITG
                     YAKIIDVLPDHNSTVKDEDLSWYARGGRHNTQVPCEATAYIGGIYVGGSVGWKKELWF
                     TGGYTDEKGPEKVTSPLVGRWIGWKVIMYNVNNDTAVKLESYIDNTNTNYWIKVTDLV
                     DDGGWYSKSDDNEFNSAPCGRDKDYVVTNAGPIATFRSDNLTWDFMNLSIREINP"
     gene            complement(1412..1567)
                     /locus_tag="VFI64_03045"
     CDS             complement(1412..1567)
                     /locus_tag="VFI64_03045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242295.1"
                     /translation="MSIAKGEFILALIIVVSSISLLQIEYFTKVDAQEEETEVHFLTT
                     LGRDLVE"
     gene            2318..>3112
                     /locus_tag="VFI64_03050"
     CDS             2318..>3112
                     /locus_tag="VFI64_03050"
                     /inference="COORDINATES: protein motif:HMM:NF015763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242296.1"
                     /translation="MADLWAFVLVSIPAMIILGLRHALDVDHITAIDNLVRLHNAAKK
                     ARWVGAGFSIGHMVSVLTEMILIIYVIGSVTGADVLSFWGGIIGAIALATIGAVNIYS
                     MKRWGKTGSAILASKILARTGMLGPFGSSLVTGLVFGLGFDTATQISAITLSAVASAT
                     LGVQVALILAGFFAMGMIPVDTLDSIMLRSAFSRIFDKKGFRYMSFALSGAAMTVAAA
                     ASYKILTGSDILPELTGPILAGVIIGSSFVYAFGMSRRRRGSRVLQK"
BASE COUNT          889 a          574 c          609 g         1040 t
ORIGIN      
        1 taggagagca tacgctgtct tgttcttccg aggtttgcga tgtagcgata tcaaagtgga
       61 ccgatgaagc gcaatacaac gacaaggata gacttagaaa taatagtact ttatagctgg
      121 atttcatgca cattgctttt aacagaaagg tgatattagt tttctcctgg tttttaattt
      181 aatatcgtag aatagagagc agggtatcat aatcatagca tgctgatgtt tttattattg
      241 tttcaaggtc tatccagata tctggagaaa caagataagt tatgagattt ctcatgggtt
      301 tatctcccta atgctgagat tcataaaatc ccatgtcaaa ttgtctgatc tgaaagtagc
      361 tataggacct gcgttagtga ccacatagtc tttatctctg ccgcatggtg cactgttaaa
      421 ctcattgtca tcagacttgg agtaccatcc accatcgtcg accaagtcag tcacttttat
      481 ccaataattt gtattagtgt tatctatgta tgattccaac ttcactgctg tgtcattatt
      541 gacattgtac attatgactt tccaccctat ccagcgtcca accaggggac tagttacctt
      601 ttctggtccc ttttcatcag tgtatccgcc agtgaaccaa agctcttttt tccacccgac
      661 ggagcctcct acataaatcc ctccgatata tgcggtagct tcgcaaggta cctgtgtatt
      721 gtgtcttcca cctctggcat accaactcag gtcttcatcc ttgacggttg agttatggtc
      781 aggaagtaca tcaataattt ttgcataacc tgtgatctct acattcttcc attgaggtaa
      841 tccaggtgga gtgtttacat tcattctaac ggctggacct gatatcctcc atcccccatc
      901 actctgtcga gtaatattct ggttaaaagt gagcgaaaaa gcgttatcgt cgagaggctt
      961 actcatattc atgtaccatt ctcttcctcc ttcttttgtg ggatagattt ccttgattcc
     1021 aaacttatct agtccagata gtttagcggc agctgcttct tgatctatat agatagaata
     1081 tgattgttct atagcagaat ttgaaaagat caaggctaat ataaataagg aaattattaa
     1141 aagtagttta gtatacacag taagtataat ggtattaaat tgtcgatatt tatttgataa
     1201 catgtatttt taacaacctg attgatattc agaattaacc atttcgaatg gtagacatct
     1261 cattgatccg gtctatatat ccagaaggaa atagaatgtt ggatcgttga ttcgatagta
     1321 aaagtcagga aggaacaatt ttgaatattt tccactgccc aattgagact atgtatagat
     1381 atccgtacgt ctggtccaat ttccgagtcg gttattccac caaatccctg cccaaagttg
     1441 tcagaaaatg aacctcagtc tcctcttcct gcgcatctac tttcgtaaaa tattctatct
     1501 gtaacaaact gatagatgaa accacaatga ttagagctag aataaactcg cctttcgcga
     1561 tactcactaa taccattcat tttgttaaag ataataaaga ttattaaaaa agaccagacc
     1621 agttatttaa tttactagag ctgaagcgta gtacatgact catgactaat tcataccttt
     1681 tttgttttgg tttttattga ccgatacaaa tttcctgaca ttgctaattt aacagaaacc
     1741 gaccagttat catctagttt tttcttcttc gtcctgatgg ccgagtactc gatttcatga
     1801 tcattaccat aactaggttc caaattcaaa tttggttttt ttagtcttac gttcggagtg
     1861 ttttcgaact ataagcaatt gagggataac aagaatggat tggttcttat tataaaaatg
     1921 aacgaagctt ggatgaaata ttcatgtata tatgtgctgc aaatttaaca aattattctc
     1981 aatgcagcaa taaatagatc gaatgacagt atttaatctt ggctaacaag agcttgggag
     2041 gttctagacg taatgggttg tcaatccagt tgcgtttgcc aatgcccgat taggactgcc
     2101 aaagtaatcc tcaagtaatt ataagaaaat gccgccgtat aattcttgac atggatatgt
     2161 attcgcagtg cttcaccaaa cggtcgcaat ttcaatatat tgtctattcc tacctcctaa
     2221 caaggtcgtt cctgagctgt gtgaatagtt tgctggcttt atttcggtga ataattattt
     2281 caaagtttaa gtaatactag tttatcaaaa agtatgaatg gctgatttat gggcttttgt
     2341 tctagtctcg attccagcta tgatcatatt aggactaaga catgcacttg atgttgatca
     2401 tattacggca atagacaacc ttgtaagact tcataacgca gcaaaaaagg ctagatgggt
     2461 aggtgcggga tttagcattg gtcatatggt ttcagtccta actgaaatga tcttgatcat
     2521 ttatgtaata ggaagcgtca caggagctga tgttctttcg ttttggggtg gcatcattgg
     2581 tgctattgct ttggcaacaa taggtgctgt aaatatttat tcaatgaaaa gatggggaaa
     2641 aactggatct gccattcttg ccagtaagat tttggctaga acgggaatgt taggaccatt
     2701 tggatcttct cttgttacag gattagtatt tggattaggt tttgatactg ctactcaaat
     2761 ttcagcaatt actctttcgg ctgttgcttc tgctacactt ggcgtacagg tggcgttgat
     2821 cctggccggc ttctttgcta tgggtatgat tcctgtagat acacttgata gcattatgct
     2881 tcgttcagct ttctcaagaa tatttgataa aaagggattt agatatatgt catttgcact
     2941 aagtggagct gcgatgaccg tggctgctgc tgcttcttat aaaattctaa ctgggtcaga
     3001 tatattgccc gagctaaccg gtcccatttt agcgggggta ataattggtt catcatttgt
     3061 gtatgccttc ggaatgtcaa gaagaaggag aggtagccga gtattgcaaa ag
//
LOCUS       DASSIK010000164         2513 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_721024, whole genome shotgun sequence.
ACCESSION   DASSIK010000164 DASSIK010000000
VERSION     DASSIK010000164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2513
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_721024"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(393..1523)
                     /locus_tag="VFI64_03055"
     CDS             complement(393..1523)
                     /locus_tag="VFI64_03055"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HET7242297.1"
                     /translation="MSCWIYLTFSILQSFRNSPRLKFDPENIGPEHRVSIIIPARNEE
                     QYIFRCLKSLLSQKHVTYEVIAVNDSSTDNTLNIIRNLSKEDSRLVIVNAPPKPGDWV
                     GKNWACYQGYLNSTGEIFLFTDADTVHSPEALSSALASMLKEKLDAISAVPKLSCKDI
                     ITRVTLPILSVFLHSRYSPVRVNDPKTKVGYFFGSFYLIKRTTYESVGTHESVRHELV
                     EDGALGHKVKEMNFKLKLVRGEAYVEAIWARDPRTLWNALRRLIIPLYHNEKRSAILI
                     VVTLFFILLEPIIIFPLSAYFIYTASTLLSKSLFLLTLTSLILVVSAGVVQSKYGLLQ
                     RAVYGLGSPVGCAIITICFLLSLFDMRGKRTVSWRDRDYEIG"
     gene            complement(1736..2026)
                     /locus_tag="VFI64_03060"
     CDS             complement(1736..2026)
                     /locus_tag="VFI64_03060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit F"
                     /protein_id="HET7242298.1"
                     /translation="MIAIGSRVFITSFQLAGVEGIKVESPNEALEQINHLGLANDVGL
                     ILLSDDIGKEIRISLTNLRSRKPIPLIFELPSPGSSKENVDYRALLKQILGV"
     gene            2169..>2513
                     /locus_tag="VFI64_03065"
     CDS             2169..>2513
                     /locus_tag="VFI64_03065"
                     /inference="COORDINATES: protein motif:HMM:NF021646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242299.1"
                     /translation="MKIIYVLLDGIGDLPHPDLNGLTPLEAAITPNLNSLAKNGSMGQ
                     VISVGKGVAPQSDIAVFNMLGYNFKGEKYVGRGVIEIIGSAVDFKDGDLALRGNFATL
                     GLNTEIVDRRAGR"
BASE COUNT          759 a          486 c          499 g          769 t
ORIGIN      
        1 tattggtcca ggtttacaac gaagacgaat tgtgcgggca agggagatca gagaaagggt
       61 gtctaaattc atcatcagat catatatttc cttcttagac atagaatcgc tcaagatttt
      121 ttcttcaaaa ttatgaaggt ccaagttgtg tgtagttgac tgcagttcca agtattatcc
      181 aagacaatat tccagacgat gactaataaa tacttaggat ggatcctgat tggataattt
      241 gatccataca agaggtcgtg aaaaacgtat aggcaatcaa tgttctgtat tcaccccatt
      301 cctatacctt gtctaagtaa atgtaaatgt ctcaagatat ttgatcattg acgcaatata
      361 acatttggta acgttagatc tcttattatt acttagccaa tttcataatc acgatctcgc
      421 caagacactg ttctttttcc tctcatgtca aagagcgaca agagaaaaca aatcgtgata
      481 attgcacatc caacaggaga acccaaccca tatacggctc gttgcaataa tccatatttc
      541 gactggacta cacctgctga tacaactaga attaaagatg tgagggttag caaaaaaaga
      601 gacttactga gtagtgtaga agcggtgtaa ataaaataag cagacagtgg aaatattata
      661 attggttcga gcaatatgaa aaataaagta acgacaatta gaatcgctga gcgcttttca
      721 ttgtgatata acggaattat gagacgtcga agtgcattcc agagtgttct gggatcgcgt
      781 gcccatatcg cctcgacata ggcttctcct ctaacaagct ttaacttgaa attcatctct
      841 ttcaccttgt gtcccaatgc accatcctct acaagctcat gcctgactga ttcgtgtgtg
      901 ccgacggatt cgtaggtagt tctttttatc agataaaaac ttccgaagaa atatccaact
      961 tttgtttttg ggtcatttac tctaactggt gaatatcggg agtggagaaa aactgacaat
     1021 atgggaagtg taactctggt aatgatgtct ttacacgaaa gcttcggaac tgccgatatg
     1081 gcatcaagtt tttccttaag cattgacgca agcgcacttg ataaagcctc aggtgagtgt
     1141 accgtatccg catcagtgaa cagaaaaatc tctccagtcg aatttaagta accttgataa
     1201 catgcccagt ttttacctac ccaatctccg ggtttcggag gggcgttgac gataactaac
     1261 ctgctgtctt cttttgaaag attgcgtata atattcaatg tattatccgt agacgaatca
     1321 ttcactgcta ttacttcgta cgtgacgtgc ttttgactca acagactttt tagacacctg
     1381 aatatgtatt gttcctcatt tcgtgcggga atgatgatgc taactctatg ttcgggccca
     1441 atattttcgg ggtcaaattt cagtcgaggg gaatttcgaa atgattgaag aattgaaaat
     1501 gtaaggtata tccagcagga cataactccg gtattgaagg cgatcaagat tgttaccaag
     1561 atcgcgacta aatcaaacat gttaaaacat aaccaaattt ctaaattctg ttaaccatgc
     1621 gtagacactt ctatcagatt tatacttgtt atgcttcaat accagatccc aattataaac
     1681 agtgaaacta ttttgctctt cgatttttca atcttgcaat tatcgcggcg attttctata
     1741 ctcccaaaat ttgcttaaga agagctcggt aatctacgtt ttctttagaa ctaccagggg
     1801 atggaagttc aaatatcagt ggtatcggtt tcctggatct taggtttgta agagaaatcc
     1861 taatttcttt gcctatatcg tcgctcaaaa gaataagtcc tacatcatta gctaatccca
     1921 gatgattgat ttgttctaat gcttcgttag gtgattcgac tttgattccc tccacgccag
     1981 ccaactgaaa acttgttata aagactctgc ttcctatcgc aatcacacgc aatgtctttc
     2041 tttgtcagct gttaatttgc cctttttaat ccttttgacc cattctcatt agatcacgtg
     2101 attagattgg ggagcaatct tgtcactgta taatttttat ttggcgatta acaagcaccg
     2161 ccaaagattt gaagatcatt tacgttttgc tggatggaat cggagactta ccgcatcctg
     2221 atttgaatgg acttactcca cttgaggctg ccataacgcc aaacttgaat agtcttgcaa
     2281 aaaatgggtc aatgggacaa gttattagcg ttggaaaagg agtagcgccc caatctgaca
     2341 ttgctgtatt caatatgcta ggttacaatt tcaaaggaga aaaatatgtg ggacgagggg
     2401 taatagaaat aattggatct gcagtagatt tcaaggatgg ggatcttgca ctgcgaggaa
     2461 atttcgcaac cttaggtctt aatacggaga tagttgacag aagggccggc agg
//
LOCUS       DASSIK010000165         2769 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_721069, whole genome shotgun sequence.
ACCESSION   DASSIK010000165 DASSIK010000000
VERSION     DASSIK010000165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2769)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2769)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2769
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_721069"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..242
                     /locus_tag="VFI64_03070"
     CDS             <1..242
                     /locus_tag="VFI64_03070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242300.1"
                     /translation="QKKPTIIDFESASVGRKPNNVTAAANTFLAALSLDLRSKYIVRR
                     YQTEEIIRSLREYKRTMTRESFNKIIKLYYSSLFS"
     gene            complement(579..1100)
                     /locus_tag="VFI64_03075"
     CDS             complement(579..1100)
                     /locus_tag="VFI64_03075"
                     /inference="COORDINATES: protein motif:HMM:NF042555.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6659 family protein"
                     /protein_id="HET7242301.1"
                     /translation="MNAEEFSKNILNLDPRIRFSGLVEKSGHLYAGIMREGLDEHLKG
                     RNPEISYSQSAYIVDLRKMFIPELGNLDFVIYLYDKVRMMSIPIKDQVLVLSTDNNGN
                     LDEFLSKVKNYIKEIGTDLELRKGFAHVDNAKREILRNLNESGISEDMIADQLDLDVE
                     TVRLIIQELSKKQ"
     gene            1339..1641
                     /locus_tag="VFI64_03080"
     CDS             1339..1641
                     /locus_tag="VFI64_03080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242302.1"
                     /translation="MAEDTSSAESSTIPFPTLTIIYLISKAESVIEEISQKYNNITVE
                     DCYGFFSGGVKQDYKKITIWSQGIDSLWFNALIARVKEVTGVETVPVVSGGIMYSV"
     gene            complement(1988..2368)
                     /locus_tag="VFI64_03085"
     CDS             complement(1988..2368)
                     /locus_tag="VFI64_03085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242303.1"
                     /translation="MKNVLCYHLDLEETQIRYKITQLTDNDITVALSLVEDVELESIS
                     QQQMMLEAVDRAITDTEVRQQLKPILEAILRAQPQTVIKSYPQTFIQVTMPKSRYERI
                     GYPKVGDRLLIDLKNENPNTTPSI"
BASE COUNT          865 a          505 c          501 g          898 t
ORIGIN      
        1 cgcaaaagaa accaacaatt atagattttg aaagcgctag cgttggaagg aaaccgaata
       61 atgttactgc tgctgcaaat acgttccttg ctgcactttc actagacttg aggtcgaaat
      121 acatcgtgcg taggtatcaa actgaagaaa taatacgatc ccttagagaa tacaagagaa
      181 ccatgacaag agagtcattt aataaaataa taaaattata ttactcttca ttgttcagtt
      241 aaagcttatg ctttatggac aggattatga attcactgga tcaaagaaac gaatacgtta
      301 ccaaattagt gtacttattt gagatgattt taaatttaac acaagttaaa tctaaaatgt
      361 taatataacc tgatggtatt aacttgatac atcgccctta cctttagaag tcaaggcact
      421 gaataaggca aaccgatatg ttcaagtcct atagtcggag tagtatcaaa tgcaatgata
      481 aacgattgag tcgcctagtg acttagttgg atagattagc cgttggttgc gctgattgaa
      541 tagcagatat tattgctttt ctggaatgaa ttgttgtatt attgcttttt tgacaattct
      601 tgaattatga gtcttactgt ctcaacatca agatcaagct gatcagcgat catatcctct
      661 gagataccag actcgtttaa atttctcagg atctcccttt ttgcattatc tacatgtgcg
      721 aaccccttgc gtaattccaa atcagttcca atttctttaa tgtaattctt tacctttgac
      781 agaaattcat ctaaatttcc gttgttatct gtggataaca ctaagacttg atccttgata
      841 gggatgctca tcattcttac cttatcgtat agatatatta caaaatccag gtttcctaac
      901 tcgggtataa acatttttct tagatccaca atatatgctg actgggaata gctaatttcc
      961 ggatttctac ccttcaaatg ttcatccaat ccttccctca taatacctgc atataggtgc
     1021 ccagattttt caacaagccc tgaaaaccta atgcgcggat cgagattcaa gatgttcttt
     1081 gagaactcct cagcgttcat gtggagttat tttattcagg aaggaaatat agttttggct
     1141 tcccctatgt ataaaaatag aattaaacag gttttttatg taaaaataac agttaaatca
     1201 gatttaggga gacttggatt tcccataacc cagttcagct tttgcaaatg ccaaaaattg
     1261 attggacagt aggaattcga cctctactcc acgaaatcca gatataagtc atgataattc
     1321 tatttggatg taatcatcat ggctgaggac acatcgtctg cagaatctag cacaattcca
     1381 tttcctacct tgactattat ttacctaata tcaaaggcag agagcgtcat agaagaaata
     1441 agtcagaaat ataataatat aactgttgag gactgttatg gtttcttttc tggaggagtg
     1501 aaacaggatt acaagaaaat cacaatatgg agtcaaggga tagacagtct ttggttcaat
     1561 gcattgatcg ctagggttaa agaagtaact ggcgttgaaa cggtcccggt tgtgtcaggc
     1621 ggtatcatgt attcggtata ggctatcaga attctataac aagatgatcc cgatctgttt
     1681 atccattata caaatatggg tattcaaaag ctgtaaaagc tgtaatacag cccatggctt
     1741 gtcaaagtcc cacttcatta tttccatgat aatagcaaaa aatgacaaga gctattgcca
     1801 atccttatcc agcatagcag tggtgtaggt tctttatctt gtatacattt atggcgtggt
     1861 actgcgatat taggaacttt acgaaacacg tcatttgcta atgataagga cttaaaagag
     1921 gaaataggac gaatagagtc tgcccttatt tctagacgag ttattcgact ttagaccgcg
     1981 ccgtaattca aatagaagga gtagtattag gattctcatt tttcaggtct atcaataatc
     2041 tatcgcctac cttcggatac ccaatccttt catatctgct ttttggcata gttacctgaa
     2101 taaaggtttg tggatatgac ttgattaccg tttgtggttg agctctaaga attgcttcca
     2161 aaatgggttt gagctgttgt cgaacctctg tgtcggttat tgctctgtcc acggcttcca
     2221 acatcatctg ctgttgagaa atcgattcca actcgacatc ttcaacaaga gacagcgcca
     2281 cagttatgtc gttgtcagta agctgggtaa tcttgtaccg aatttgtgtt tcctccaaat
     2341 ccaaatgata acacaaaacg ttcttcatat tactgtttac atattggagt aatattttat
     2401 caaaaggaac aactcgtcag gaataactaa aagcgccagt ttgtaatagc cagattggac
     2461 caccaggact tgattttgaa aaaaattttt tttattttac taagctcacc aagttaattt
     2521 gacaacaaac atagctctgt tttagagatt aatcttgacc tcaccatcgt tgaccatatc
     2581 aaaaaaatct gcatcaagag agccgcgagc tgggatctaa tgtattcagt tgtttatcat
     2641 taaatcctag tagtaaatat ggaaatgtgt gatctatgct attcaattta tttccctcca
     2701 cgtttgattt actttgttat aagggacatc tttcgaatat tgatgtctag tttgcataaa
     2761 gttttcctt
//
LOCUS       DASSIK010000166         5799 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_826251, whole genome shotgun sequence.
ACCESSION   DASSIK010000166 DASSIK010000000
VERSION     DASSIK010000166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5799)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5799)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5799
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_826251"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(42..920)
                     /locus_tag="VFI64_03090"
     CDS             complement(42..920)
                     /locus_tag="VFI64_03090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA ester lyase"
                     /protein_id="HET7242304.1"
                     /translation="MLFRTLLFIPGNNERFIKKSLVLDADILCYDLEDSVPVKEKDVA
                     RDLLKMYFREQKVDNIRSSIYVRINSSESGLAKADLLDTIQSGVDGIVLPKINDSEEV
                     NEVTKIIKELELERGLGAGRIAIIPSIETARGVVNTYSIARANERVIAVVFGVFDFLH
                     DMDIGDYGDAISYSYARSKIPVEAKAANVASLDAIWQNVNDIDGLISDATTARKFGYS
                     GKSLIHPSHIRPVHEVFLPTPKQIEWAKKVFEALHEAMEGGSGPGAVTLDGKMIDAVH
                     YKQAKAILEMIRALKL"
     gene            complement(941..1990)
                     /locus_tag="VFI64_03095"
     CDS             complement(941..1990)
                     /locus_tag="VFI64_03095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HET7242305.1"
                     /translation="MKAAVYREYNKDPTKVINIEDVDMPKLKPNEVMIKIEAAAYNYN
                     DLWAIWGDPIKVPLPHISGSDSAGVVVEAGSDVVKLKVGDRVVSHSNMSCRVCDLCTS
                     GREYDCNDRLIWGFQTGPLWGGFCQYGHLPEVNVAKIPDNVSFDDAAAVSMVGMTAWH
                     MLVGRAKIRPGLTVLIMGGTSGVGMVGIQIAKLYGCDVIATAGNKEKMDKCLELGADH
                     VVNHREADWYKKVREVTKKQGVDVVFEHIGKSTFAQEVSLLKNGGTLVATGATTGYDS
                     TIDLRYLFFKGTNLLGSTQGTKAELEQVIYWTSKGKIKPLIGQILPFSDMVKGHVMMA
                     NGDIMGKIVTTPQKL"
     gene            complement(2112..2396)
                     /locus_tag="VFI64_03100"
     CDS             complement(2112..2396)
                     /locus_tag="VFI64_03100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HET7242306.1"
                     /translation="MSVSQPQNNDEEIRKKEAEAAVRQKALMLLLDTNARQRLMNIRI
                     VKPELAGAVENYLISAASAGRLNRALTDQELKQLLINLQHPKKDFKINRI"
     gene            complement(2425..2877)
                     /locus_tag="VFI64_03105"
     CDS             complement(2425..2877)
                     /locus_tag="VFI64_03105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19e"
                     /protein_id="HET7242307.1"
                     /translation="MAKVYDIPADYLIPRFAEHLKKDKKIEAPNWSSFVKTGCHVEKI
                     PQNKDWWYVRCASLLRKIYMHGPLGVSDLRREYGGKKQNGYSLAHHRRAGGAIIRRAL
                     QQLESSGYLIKKGQGRLISDEGVKRMDRISTEIYKELTTSMPELQRYA"
     gene            complement(3106..3423)
                     /locus_tag="VFI64_03110"
     CDS             complement(3106..3423)
                     /locus_tag="VFI64_03110"
                     /inference="COORDINATES: protein motif:HMM:NF015965.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase P subunit"
                     /protein_id="HET7242308.1"
                     /translation="MKRNNSNAVASERIEILERNLLHEFGIDNDWAEKQARVALRIAL
                     HSRVSIPYSLRQLFCRNCKQFIIPGKTSRVRTGRSRSKAVRITCLKCMHVYRKMMFPC
                     RPR"
     gene            3600..4295
                     /locus_tag="VFI64_03115"
     CDS             3600..4295
                     /locus_tag="VFI64_03115"
                     /inference="COORDINATES: protein motif:HMM:NF015545.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis protein"
                     /protein_id="HET7242309.1"
                     /translation="MFSLIIAEAGLETVPSRIFDHTSVKNYARKIGRKPKEVLLDTSY
                     HFSAMTHHDLPLWWKRGRPDIVHFSLLTALSTPLFIERKLDVYVSTIENKLILISKDL
                     RIPKSYFRFEGLMMNLFRDKVINDPNGSRKLLELKENINFKEIISQIVKPNKVIALSI
                     KGIRSNPFQIIVDSVEDKNKNYCFVVGGFQRGHFQEDVKSIFDTMYSVSDYGLESHVV
                     IARILYECEKLIQ"
     gene            complement(4289..5176)
                     /locus_tag="VFI64_03120"
     CDS             complement(4289..5176)
                     /locus_tag="VFI64_03120"
                     /EC_number="2.5.1.141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008495 - protoheme IX farnesyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0048034 - heme O biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme o synthase"
                     /protein_id="HET7242310.1"
                     /translation="MIPQFTVGNRIKNYYELTKPKIWYLLVFTAFGAALTASLLFKIE
                     VTPLQWFLLLTGVAAGSAAADTITGYNDRDIDAIMERTKARPIPSGRISPRNALIFGL
                     ILTTVSLVCAWLINYIALGLMAFGLFDNIIVYSKWLKRRSQANIILGGFSGAAPALIG
                     YVAVTTQNIEIGLVMAALVFFWIPTHIWSLALHVKKDYTKARVPMLPVVADERTSVRV
                     IAITTLLMVAFSIVPFFLNQFGLIYLITATVFGIVMILLSTWLLVRPSERASWMVFKF
                     SSPYLTALFIAFILDAAFH"
     gene            complement(5362..>5799)
                     /locus_tag="VFI64_03125"
     CDS             complement(5362..>5799)
                     /locus_tag="VFI64_03125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HET7242311.1"
                     /translation="KILSELSNDAAVSVPKLSKKININASVVYSRIKRLVRRGFIKKF
                     TIVINDEALGFSVKALTGINMDSKLRDNVLNELFKIPEVREISEVTGRFDILVTMNSH
                     SLDEMHQLISERIGRIEGVQKTETFIEMRKTVREMLFPSSKVK"
BASE COUNT         1666 a         1258 c         1012 g         1863 t
ORIGIN      
        1 cattagtgtc cgcggcaata aatccagact tacgttccac ttcatagctt caaggctctg
       61 atcatttcca ggattgcttt ggcttgtttg taatgcactg catctatcat tttaccatcc
      121 agtgtaactg cgccaggccc agatcctcct tccatagcct catgcaatgc ttcaaagacc
      181 tttttagccc attctatctg ttttggtgtc ggtaagaata cttcatgtac aggcctaatg
      241 tgcgaaggat gaatcaaaga cttgcctgaa tacccaaatt ttctggctgt cgttgcatca
      301 gatatcaaac cgtcaatgtc attcacattt tgccatatcg catccagcga agctacgtta
      361 gctgctttgg cctctacggg aattttggaa cgggcatatg aatagctaat agcatcgcca
      421 taatcaccta tgtccatgtc atggagaaag tcaaaaactc cgaacacaac ggctatcact
      481 ctttcattgg ctctcgcaat tgaataagta ttcactactc ctctagcagt ttctattgat
      541 ggaataattg caattcgtcc agctcccaga ccccgttcaa gttccagttc ttttattatc
      601 tttgtcacct cgttaacttc ttcgctatcg tttatttttg ggagtacgat accatcgaca
      661 ccactctgga tcgtatctaa aagatctgct tttgccaagc ctgattcact cgaattaatt
      721 cttacataaa tggatgatcg aatattatcg actttctgct ccctgaagta cattttgagc
      781 aaatctcttg caacatcctt ttcctttact ggaaccgagt cttccaaatc atagcacaaa
      841 atatccgcat ccagtacaag tgactttttg atgaatcgtt cattattgcc aggaataaat
      901 aatagtgtcc tgaacaacaa atcgatttat gtgaggtagt tcagagtttt tggggcgttg
      961 taacgatctt gcccattata tcaccattag ccatcataac atgacctttt accatatctg
     1021 aaaatggaag tatctgtcct atgagtggct taatctttcc tttggaagtc cagtagatga
     1081 cttgttccaa ttctgccttc gtaccctggg tagatccaag taaatttgtc cctttaaaga
     1141 agaggtatct taaatcgatt gtagaatcat aacctgttgt tgcaccagtg gcaactaatg
     1201 tacccccatt ctttagtaaa ctcacttctt gggcaaaggt agatttccct atatgttcga
     1261 aaacgacatc taccccttgt tttttagtaa cctctcttac cttcttgtac caatctgctt
     1321 ctctatgatt gacaacgtga tccgcgccta attctagaca tttgtccatc ttttccttgt
     1381 ttcccgcggt agcaataaca tcgcagccat ataactttgc gatttgaata cctaccatcc
     1441 ctacgccact tgttccgccc ataataagca cagttagtcc tggtctgatc tttgctcggc
     1501 cgactaacat atgccatgct gtcatcccaa ccatcgatac ggccgcagcg tcatcaaatg
     1561 atacgttgtc aggtattttg gcaacattta cttctgggag atgaccatat tgacagaagc
     1621 ctccccataa aggtcctgtt tgaaaacccc agataagcct gtcattacaa tcatattctc
     1681 tgccagatgt gcacaagtcg cagactctgc agctcatgtt tgaatgtgat actactctgt
     1741 ccccaacctt tagttttaca acatccgagc cagcttccac aactacgcca gctgagtcac
     1801 tgccggaaat atggggaagt ggtaccttaa ttggatcacc ccatattgcc caaagatcat
     1861 tataattata ggccgctgct tcaattttga tcataacttc gttgggttta agtttgggca
     1921 tatcaacatc ttctatgtta atgacctttg taggatcttt gttatattct ctatatacgg
     1981 ctgctttcat aaatctgtca gtagtatgaa tacttaatat agttaactag atatgtctga
     2041 atcaaatttc cgaccacaga ataatttgtt tcttagttag gggccattta gctcaaaaag
     2101 tgaataagct atcaaatccg gtttatcttg aaatctttct tcgggtgttg tagatttatt
     2161 aacaactgtt ttagttcttg atccgttagc gccctattta atctgccagc ggaggcagct
     2221 gatatcaaat aattttctac agccccagct agttcaggtt taactattct aatgttcatg
     2281 agcctttgtc tggcgttcgt atccaataag agcattaatg ccttctgtct tacggccgct
     2341 tcggcttcct ttttccgaat ttcctcatca ttgttttgtg gctgagagac tgacatttcc
     2401 tatcgtagtg atgttaaatg aaacttaggc atatctctgt aactcgggca ttgaggttgt
     2461 caattccttg taaatttctg ttgaaattct atccattctc ttcacacctt cgtcagagat
     2521 aagtctgccc tgacctttct taattaagta tcctgagctc tcaagctgct gaagtgctct
     2581 tctaataata gcaccaccag cccttcggtg atgcgcaaga ctgtatccat tttgcttctt
     2641 accgccgtac tcccttctca agtctgatac acccaacgga ccatgcatgt agatctttct
     2701 taatagtgat gcacagcgga cataccacca atctttgttc tgaggaattt tttctacatg
     2761 acatcctgtt ttgacgaagg acgaccaatt aggtgcctct attttcttat cctttttcag
     2821 gtgctcggca aatctaggga tcaagtaatc agcaggaata tcataaacct tggccataat
     2881 acgttacaag acttgcccta attcccttat aaatccttat acctatctat attctaacga
     2941 taacgtcagg tagcttttgt ttctgcgcaa accggtgcaa taatcgttta agcaaatctc
     3001 tgtctatatg attactattt taccaacctg caaaataagc gattcacata ttcaatccca
     3061 caaaagaatt gattcctagt taagctaacg taatccagta ttttctcatc ttgggcggca
     3121 cggaaacatc atttttctat atacgtgcat acattttaaa caggttatac gcacagcttt
     3181 cgatctagat ctgccagttc ttactctgga agttttacct gggatgataa attgcttaca
     3241 attcctgcaa aatagctgcc ttaatgaata tggaatgctt actcgactat gcaaggctat
     3301 tcttagtgcg actcgtgcct gtttctctgc ccagtcgttg tcaatcccaa actcatgtag
     3361 taaatttctt tccaaaattt caattctctc actagcgacg gcattgctat tgttcctttt
     3421 caactgctaa gaaaaagtac tctgattgta caataaatct gttattgcct ttgatgcttt
     3481 aatattccaa ttagaaccta aagactaaag acaacattgt ctatcgagac gtaagtgtta
     3541 tgacggaatt tgccgatact tcagtaacta aataactccc attcaattac agaatcgtgt
     3601 tgttttcttt gattattgca gaggcgggat tagaaacggt accgtcaaga atatttgatc
     3661 acacttcagt aaagaactat gctagaaaaa taggacggaa accaaaagaa gtcctacttg
     3721 atacgagtta ccattttagt gcgatgacac atcatgatct tccactttgg tggaaacgtg
     3781 gaagacctga tattgttcat ttttcactct taaccgccct ttctacccca ctcttcattg
     3841 aaagaaaatt ggacgtttat gtatcgacca tagaaaataa gttaatcctc ataagcaaag
     3901 atcttagaat tcctaagtcg tattttagat tcgaaggatt gatgatgaat ctcttcagag
     3961 ataaagtgat aaatgatcca aacggctcaa gaaagttgct tgaattaaag gaaaatatca
     4021 atttcaagga aataataagt caaattgtaa agccaaataa agtaattgca ctttcgataa
     4081 aaggaattag gagcaatcct tttcaaatta ttgttgatag tgtggaagat aaaaataaaa
     4141 actattgttt cgttgtagga ggatttcaac gtggtcattt tcaggaagac gtcaaaagta
     4201 tttttgatac catgtattct gtaagcgatt acggattgga atcccatgtc gtaatcgcaa
     4261 gaattctata tgaatgcgag aaattaattc aatgaaatgc cgcatccagt atgaatgcta
     4321 tgaataatgc agtcaaatag gggctggaaa atttaaaaac catccatgat gctctttcac
     4381 tgggtcttac caaaagccat gttgacaaga gaatcattac gataccaaac acggtagcgg
     4441 taattaagta gatcaatcca aattgattta agaagaacgg gactatgcta aatgccacca
     4501 tcaaaagggt tgttatcgca ataacacgaa ctgatgttct ttcatctgca acgactggta
     4561 acatcggtac ccttgctttt gtataatcct tctttacatg taacgcaagg ctccatatgt
     4621 gtgttgggat ccagaaaaag acgagagcag ccataaccaa tccaatttcg atattctgcg
     4681 tagtaactgc aacatatcca attaacgcag gggccgctcc tgaaaaaccg ccaagtatta
     4741 tattggcctg actcctacgc ttgagccatt tactgtagac aattatattg tcaaacagac
     4801 caaacgccat tagtcctaac gctatgtaat taatcaacca tgcacaaacg agagatactg
     4861 tagtcaagat caatccaaag attagcgcat ttcttggaga aattctacca gatggtatag
     4921 gtcttgcttt tgtcctttcc ataattgcat ctatatcacg atcgttatat cctgtaattg
     4981 tatctgccgc ggccgatcca gcagccactc ccgtgagaag caaaaaccac tgcaaaggtg
     5041 tcacttcaat tttgaagaga agcgatgcag tcagggctgc tccaaatgcg gtaaaaacta
     5101 aaaggtacca tattttcggt ttggttaact cataataatt cttgatccga tttcctacag
     5161 tgaactgggg gatcaaatta tgaatggcct ctttctaaac ttgtaacatg ttgcaataac
     5221 attaatactt tcataattag tatgaacggc caatttttga taatcaggat ttacttttat
     5281 ttgataaaat ataatataaa agttacaata tccttacttt ctggccacat caaaattatc
     5341 gctatgatct attactacga gttattttac tttcgaagag gggaatagca tttctcttac
     5401 ggtttttctc atttcaatga atgtttctgt cttttgaaca ccctcgatac gcccaatccg
     5461 ttcggaaatt aattggtgca tttcatcaag agaatgagag ttcatggtca ccaatatgtc
     5521 aaatctcccg gtgacttcgg atatttctct aacttctgga atcttgaaaa gttcgttgag
     5581 tacattgtct cgcaattttg aatccatatt tatcccagtt agagccttga cactgaaccc
     5641 taaggcttcg tcattgatta cgatcgtgaa tttcttaatg aagcctcttc ttactaaccg
     5701 cttgattcta ctgtatacaa cggaggcatt gatattgatt ttctttgaaa gctttggtac
     5761 cgacaccgct gcatcgtttg aaagctcgct taagatctt
//
LOCUS       DASSIK010000167         2117 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_328914, whole genome shotgun sequence.
ACCESSION   DASSIK010000167 DASSIK010000000
VERSION     DASSIK010000167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2117)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2117)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2117
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_328914"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(527..1141)
                     /locus_tag="VFI64_03130"
     CDS             complement(527..1141)
                     /locus_tag="VFI64_03130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242312.1"
                     /translation="MCTVIASQTIFTALVANAETGPIQSIGNNTNPDFQLEQSATNVT
                     SSDLLPYVNRIHGIMMSIPSNWTLSTSGLPDYTQIAGFYSPLQNLSDSIPARLSISVM
                     DYQQNVSLKDFTNLTLSSLNRTGQFKVISSDPITLDGRPGYQIILSTLPNLGNPLNFG
                     LMQSWTAVGTKIYQFSYSTESSKFATYLPTVELMLKSLRIHDTR"
     gene            complement(1778..2005)
                     /locus_tag="VFI64_03135"
     CDS             complement(1778..2005)
                     /locus_tag="VFI64_03135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242313.1"
                     /translation="MKDITEDIWVPTPTEAKLIFSRCDMCEKPYEAYESEIENPTSAI
                     SEEELEEQVPLLLLCDPCREELDVFHLVKKP"
BASE COUNT          652 a          383 c          409 g          673 t
ORIGIN      
        1 cgaacctaat cgtccatagt ttctgacttt taagaggcac atcccctcat taacttgagc
       61 ttaaagctat aatgtactaa attatttttt gggatgctgc tcttttggtc tgcaagaata
      121 atactttcaa attggtatgg aatttgatcc ctctagcaag ggtgccgagt actcttcaaa
      181 gtgtagcatc ttacctgttg gataatggta attattgtcc acgttgctcc acaagttgcg
      241 gatacgaccg gatgaaagaa agattgaact ccatgtccga aagcggccga aacagatatt
      301 gaaatcagcg atatagtatt ttttcatgaa atctatcgtg tatttttttg agtttaaagg
      361 atatgtgatc ggaacctgta gatcaacttc aaatttgaag gagtaagtga atagtaaggt
      421 catctcggct tggtttatag atatgggttg ttcactttag atatttgatc tttcacccaa
      481 tctccccgag agaatcatgg agaatattgg aatagtaaaa gaagaattat ctcgtatcgt
      541 gtatcctcaa agattttagc attagctcaa cagtcggcag atatgtcgca aattttgagc
      601 tttcagtgct atatgaaaat tgataaatct tcgtgcctac tgctgtccat gattgcatta
      661 acccgaaatt aagtggattt cccaaatttg gtaacgttga taaaattatt tggtaacctg
      721 gtcttccatc aagagtaata ggatctgaac ttatcacctt aaattggcct gttctgttta
      781 atgaagaaag cgttagatta gtgaaatctt tgagcgatac gttttgttga tagtccatca
      841 cagaaattga aaggcgagcc ggtattgagt cagaaagatt ttgaagaggt gaataaaaac
      901 ctgctatttg agtatagtct ggcagtccac tagtagataa ggtccagttt gaagggatgg
      961 acatcattat tccatgtatt cggtttacat atggaagtag atcggatgaa gtaacattcg
     1021 tagcggactg ttcaagctga aaatcaggat tagtgttatt tccaattgat tgaataggtc
     1081 ctgtttccgc attagcaact agcgctgtaa agatcgtctg agaagcaatg actgtgcaca
     1141 cgaataaaca aatcagcaac gatgttctaa ccatcaaact cattttctaa cgcgagtaag
     1201 aagaaattgt tcgtttaatt aagttttgca agtaatgaga ttgaaaaagt ttgcagattg
     1261 gagtggatgc aaccaaattc taccctatgt ccgtaaccta tgatagtcaa ataccttcag
     1321 actctttctt tagcacctca ttctttttgc caggcaagta cttccttcaa taacagcttt
     1381 tttattttca ataccttgga ttaagcgccg agcgagggat aatctaaaaa caattagata
     1441 gatcaaaggg accaggaata tatatcaaga caagtaaaat attttttatt attatatagt
     1501 aaccattggc gttggcattg gggtctaaac aattctagct aatgtttcat gttagagtag
     1561 aatgcgaatg ctaacttatg ccgcgctact aatctttaca ataccgctgt caaatgtttc
     1621 tgctcaatcc gatgatcttt cccctctgcc ttagaatgct cagatcatca ggtgctgtag
     1681 gaaataaaac gccgactacc aatcattaga taacaactca ccagtttgca atttctaaga
     1741 tcgctgttct gtacatcgag aaccagaatc ataacgctta gggttttttg accaaatgga
     1801 atacatcaag ttcctcacga catgggtcgc ataacaagag taatggcact tgttcctcca
     1861 attcttcttc agaaatcgca ctcgtgggat tttcaatttc actctcgtat gcctcgtatg
     1921 gtttctcaca catatcacat cgtgaaaaaa tcaattttgc ttctgttgga gtaggaaccc
     1981 aaatatcttc cgttatatct ttcataaacg acttcatctg tacccacctt acttaaattg
     2041 gattgagtga aaaaagttga gcctctagtt catagaatga gtaaatattg atgataatca
     2101 aattatgggt ttggcaa
//
LOCUS       DASSIK010000168         2979 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1415229, whole genome shotgun sequence.
ACCESSION   DASSIK010000168 DASSIK010000000
VERSION     DASSIK010000168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2979)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2979)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2979
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1415229"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(30..1979)
                     /gene="acs"
                     /locus_tag="VFI64_03140"
     CDS             complement(30..1979)
                     /gene="acs"
                     /locus_tag="VFI64_03140"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003987 - acetate-CoA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0019427 - acetyl-CoA biosynthetic process
                     from acetate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HET7242314.1"
                     /translation="MEDSILSNKHQDNSDIKITLNGTKLQKVRKDSIENLEQFWSNEA
                     NNLLWFKKWDKILDWNPPFAKWFVGGQLNVSVNCVDRHIDNHHKNKAAIIWQGENDTV
                     QTYTYYQLYLAVNRVASGLKELGINKGDRITIYLPMIPELLITMLACTRIGAIHTVVF
                     SGFSVKALSDRVNDSMSKLIITADYGIRRGNKVQLKKVVDEAISIMPTVENIIILNRG
                     TDELSLSKNEITWQQLIENAKRFCEPEIMESTDPLYILYTSGTTGKPKGVLHGTGGYL
                     THLYATSKWVFNFNEKDIFFCTADMGWVTGHSYIAYAPLLHGVTQIIHEGAPDYPKPD
                     KYWTIIEKHGATILYTTPTALRMYMKYGSAIPNSFDLSTLRLLGTVGEPINPEVWMWY
                     FKTIGKEQCPIIDTWWQTETGGIMISQCLGIDSIPMKPGSATLPVPGIDIAIVDETGR
                     YVNSNTKGYLIIKKPWPGMLMTLWNDDEKYQNVYWNRFPGSYYSGDFALSDTDNYIWL
                     LGRSDDVLKVAGHRLSTMELESAFVSFSAVAEAAVTSKPDEKKGESIVAFLVLKTSHQ
                     ASEHLRQDLIKHIRNTIGSIATPDEIHFVARLPKTRSGKIMRRLLKSISANSDTIGDV
                     STLEDEASVEEIKQAYHDLHNTLGK"
     gene            2131..2613
                     /locus_tag="VFI64_03145"
     CDS             2131..2613
                     /locus_tag="VFI64_03145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242315.1"
                     /translation="MLDWDEQIKAHLMWIWGGEVGFMKRGIEGMLVITDRRIVFISKT
                     DMTYRVHDVYSRRQRIRFEQDENIFRPIEDYGINELRVDMNKSIKNIEMPFSKTTDLF
                     IEEKRWGTALRISFIDDEKKKHYKFSVVKSWVKYPAKDPLEFQRMDWSPVITLFKNLR
                     "
     gene            2650..>2979
                     /locus_tag="VFI64_03150"
     CDS             2650..>2979
                     /locus_tag="VFI64_03150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HET7242316.1"
                     /translation="MAGKLFVVGVGPGSSEYLTDIAKYKIIKSRYIAGYSHTLSIIRH
                     LLDPTWQRISEVTMDSQDDIYKNIFDRMETNEYCTVPFTGDVNFSESEVIDRLLEIFG
                     EDNVEMIP"
BASE COUNT          905 a          497 c          571 g         1006 t
ORIGIN      
        1 aataagctaa gagtgctagc aggagaacat cattttccca acgtgttatg taaatcatga
       61 tatgcctgct ttatctcttc gactgatgcc tcatcttcaa gagtacttac atcaccgatg
      121 gtgtctgagt tggcagatat ggactttagt agtcttcgca ttatctttcc actgcgtgtc
      181 tttggaaggc gtgcaacaaa atgaatttcg tcaggtgtag ctattgatcc gattgtattt
      241 cttatatgtt taattagatc ttggcgtaga tgttctgatg cttgatgact agtttttagt
      301 accaggaaag ctacgatcga ctcgcctttt ttttcgtcag gtttgctagt taccgctgct
      361 tctgctactg cactaaagga aacaaaggca ctttcaagct ccatagtact taatctgtgt
      421 cctgctacct taagtacatc atcagatctt cctaaaagcc aaatatagtt atctgtatca
      481 cttaatgcaa aatctcctga ataataggat ccaggaaatc gattccaata tacattctga
      541 tatttttcat catcattcca caatgtcata agcataccag gccatggttt cttaataatt
      601 aaatatcctt tagtatttga attaacatat cttccagttt cgtctactat tgcgatatca
      661 atcccaggaa caggtagtgt tgcagatcct ggtttcatcg gtattgaatc tataccgaga
      721 cattgactaa tcatgatacc accagtttcg gtttgccacc atgtatcaat gatagggcat
      781 tgttcttttc ctatggtttt aaagtaccac atccaaactt cagggttgat cggttcgcct
      841 actgtgccta ataaacgcag ggttgataga tcaaaagagt taggtattgc agagccatat
      901 ttcatataca tacgaagtgc tgtgggtgtg gtatagagaa ttgtggcacc gtgtttttct
      961 atgatagtcc aatatttatc tggtttagga taatctggtg caccttcatg tatgatttgt
     1021 gttactccat gtaacaatgg tgcatatgca atataactat gaccggtaac ccaccccata
     1081 tcagcagtac agaagaaaat atctttctca ttgaaattga atacccattt cgaagtggca
     1141 tataaatgag ttagatatcc acctgtacca tgaagaacgc cctttggttt acctgtagta
     1201 ccagatgtat agagaatgta caatggatct gtgctttcca ttatttctgg ctcacaaaat
     1261 ctcttggcat tttcaattag ttgttgccac gttatctcat tcttagagag acttaattcg
     1321 tctgttcctc tgttaagtat aataatattc tctactgtag gcataattga tatcgcctcg
     1381 tcgaccactt tcttcagctg aaccttatta cctctacgaa tgccgtaatc tgctgttatg
     1441 attaattttg acattgaatc gtttactcta tcagataacg cttttacact aaaaccagag
     1501 aatacaactg tgtgaatggc gccaatacgt gtacatgcta gcatagtaat gagtaactct
     1561 ggtatcatgg gaaggtagat tgttatccta tcgcctttgt ttatacctaa ttcttttaat
     1621 ccactggcaa ccctatttac agcaagatat aattgatagt aggtgtatgt ctgtaccgta
     1681 tcattctcac cttgccaaat aatcgcagct ttgttcttat gatgattatc tatatgtctg
     1741 tccacacaat ttacgctaac atttagctga cctccaacaa accattttgc aaatggtggg
     1801 ttccagtcta gtattttatc ccatttctta aaccaaagga gattgttagc ttcatttgac
     1861 cagaattgtt ctagattttc tatagaatct tttctgactt tctgtaattt cgtcccattt
     1921 agagttattt tgatgtcgct gttatcttga tgtttattgg ataagatgga gtcttccata
     1981 tactatgaat atgattaact caggcaagat taaaaatatt ttactgctat tagttatatt
     2041 tgtaatatga gtcagagtgt gtgtacgcat gattttactt tgaaacaaga gataaatggt
     2101 taatatttat gaatactaat ttggaaaaga ttgttagact gggatgaaca aattaaggca
     2161 catttaatgt ggatttgggg aggtgaagtg ggttttatga aaagagggat agaggggatg
     2221 ctcgttatta cagatagacg aattgtattt ataagcaaaa cagatatgac atatagagtg
     2281 catgacgtgt attcaagacg acaacgtata cgatttgaac aggacgaaaa catatttcgt
     2341 ccaatagaag attatggtat taatgagtta agagtggata tgaataagag tattaagaat
     2401 attgagatgc ctttcagtaa aactacagat ttatttattg aagagaagcg atggggtaca
     2461 gcattaagaa ttagttttat tgatgatgag aaaaaaaagc attacaaatt ttcagtggtt
     2521 aaaagttggg taaagtatcc agcaaaagat cctttagaat ttcagcggat ggattggtcg
     2581 ccggttatta cattgttcaa aaatcttaga tagaaagtat agatttgatc tggaagcgag
     2641 aaaagtccta tggctggtaa gttatttgta gtaggagtgg ggcctggatc ttcagaatat
     2701 cttactgata ttgcgaagta caaaataata aaatctcgtt atatagcagg atattctcat
     2761 acgttatcga tcattagaca tctgttagat cctacatggc aaagaataag tgaagttaca
     2821 atggattctc aggatgacat ttacaagaat atatttgatc ggatggagac taatgaatat
     2881 tgtaccgtac catttacagg tgatgtaaat ttttcagaat cagaagtcat tgatcgatta
     2941 ctagaaattt ttggtgaaga taatgtagaa atgatacct
//
LOCUS       DASSIK010000169         2236 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_329100, whole genome shotgun sequence.
ACCESSION   DASSIK010000169 DASSIK010000000
VERSION     DASSIK010000169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2236)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2236)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2236
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_329100"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(338..1168)
                     /locus_tag="VFI64_03155"
     CDS             complement(338..1168)
                     /locus_tag="VFI64_03155"
                     /inference="COORDINATES: protein motif:HMM:NF013429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase family
                     protein"
                     /protein_id="HET7242317.1"
                     /translation="MNWKYSITLSSFKDIEPLKTTLERMTTLGFDAVEMYGEPDSVDV
                     GSIIDLFHSHNISISGITGMWGCASKESSGRKLITRNKSIFFQTQDYIKKCIELCEKL
                     DGNVFNICLFSDDSLVQADKNHARLSESLKRELMSTIIDPVRELSLFAKDRGVDLLIE
                     PLNRYSTPVCTTSADAMYVVKSVAQENVGLLLDTFHMNIEEDSIEYSIKNTSGLLKHI
                     HLADNNRKMPGFAHINFQEIVKALRELEFDRYISFEPFVPDVHYENDIRSGIELIRSL
                     "
     gene            complement(1191..>2236)
                     /locus_tag="VFI64_03160"
     CDS             complement(1191..>2236)
                     /locus_tag="VFI64_03160"
                     /inference="COORDINATES: protein motif:HMM:NF013799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HET7242318.1"
                     /translation="AKRGGSGRTTAVLFWQNTMYADADIVLTPRPLHMEDRMIMWCYS
                     RPPGLYEKISYEIGKFDLSTYWGPLASNKSSEWIGKASELVLERQKPNILFTYIPHLD
                     YIFQREGIFPKNLKEEIRFVDNIVGNIMKKTIDLGIRDQTQFVILSEYGFSDVTSDIP
                     INRVFREHGLLAVREIEGREYIDFEYSLAFAMVDHQVAHIYVRGTSVQQVKRILDAIE
                     GIDTVLDEEGKKLMNIDHERSGDLIAISDKDRWFSYYWWFEEEKSPPFANRVDIHRKP
                     GYDPSELFIDSKTNRIPLNGKMVKASHGRVPSLSGGAGLAVYVSDRKGINKGNEDIVD
                     TVTIGRYINSLIK"
BASE COUNT          664 a          478 c          364 g          730 t
ORIGIN      
        1 ccatagaatc ctaagtattt ttgtagatat gttcgataca atctctgcgt gtaaggtgag
       61 gatattgaac tataatagag gcgttcagcg ttcgaagtgg ttgattgtgc tctttgcatc
      121 taccttattc catgctcaga cctattaaaa tacatagcat atgatttgta aattagcaac
      181 tttacaatct tgtagcattt tccgaatata agtataacgc atagttatcc aaagaatcat
      241 ttttatcaat gtgcatgact tgatgacctt caaaatttgt agttttaata tacgcgttta
      301 attgcgtcag gttgacctta gaaatacatc aatgctacta tagggaccta attagctcga
      361 taccagatct aatatcattt tcatagtgga catcaggtac aaatggctcg aagctaatat
      421 atctatcaaa ttccaattcc ctaagagctt taactatttc ttgaaaattt atgtgggcga
      481 aaccaggcat ttttctgtta ttatctgcca aatgaatatg cttaagtaaa ccgcttgtat
      541 tcttaatcga gtattcaatg gagtcctcct ctatgttcat atggaacgta tccagaagta
      601 gacctacatt ttcctgagca accgatttaa ctacatacat cgcatcagca gaggtggtac
      661 aaaccggggt actgtaccta ttcaatggct ctatgagcag atctacacca cgatccttcg
      721 caaatagact cagttcacgc actggatcaa ttattgtaga catcagttcc cgttttaatg
      781 attctgataa tctcgcatga ttcttatcgg cctggaccaa cgaatcatca ctaaatagac
      841 aaatgttgaa gacatttcca tcaagcttct cgcagagttc tatgcacttc tttatgtaat
      901 cttgagtttg aaagaaaatt gacttatttc gtgtaattag ctttcgccct gaggattctt
      961 tgctagcaca accccacatg ccagtaattc cgcttataga tatattgtgt gaatgaaata
     1021 aatctataat ggaaccaaca tccaccgagt caggctcacc gtacatttcc acagcatcaa
     1081 aaccaagcgt tgtcattctt tcaagagtag tttttaatgg ttcgatatcc ttgaatgatg
     1141 aaagtgtaat agaatatttc caattcatct aaaatcacac gatcacaaga ttattttata
     1201 agactgttta tatatcttcc aatagtaaca gtatcaacaa tatcttcatt ccctttgttt
     1261 attccttttc tgtcagagac atagacagct aatcccgcac caccagataa tgatggaact
     1321 cgtccatgcg acgccttaac cattttacca ttcagcggta ttctgtttgt tttagaatct
     1381 atgaacagtt ctgaaggatc atatccaggt tttcggtgta tatctaccct gttagcgaac
     1441 ggaggtgatt tttcttcctc aaaccaccaa taataactaa accacctgtc tttatcagaa
     1501 atcgcaatta agtccccact ccgttcatga tctatattca tcaacttttt accttcctca
     1561 tctaaaacag tgtctatgcc ctctatagca tcaagtattc tcttaacttg ttgtacgcta
     1621 gtacctctaa cgtaaatatg ggctacctgg tggtctacca tcgcaaatgc taagctatat
     1681 tcaaaatcga tatattctct accttctatt tcccttactg ccaacagacc atgttccctg
     1741 aatacgcgat ttatcgggat atcgctagtt acatcagaga atccgtactc cgataggatg
     1801 acaaattgag tctggtcacg tattccaaga tctattgtct tcttcataat gttaccaacg
     1861 atgttatcta cgaatctgat ttcctccttt aaatttttgg ggaatatccc ttcgcgttga
     1921 aaaatatagt ccagatgcgg aatataagtg aataagatgt taggtttttg ccgctccaaa
     1981 acgagttctg acgcctttcc aatccattca ctggatttat tagaagctaa aggaccccaa
     2041 tatgtggaca aatcaaattt tcctatttca taagaaattt tttcatataa tccaggaggt
     2101 cgggaataac accacattat cattcggtct tccatatgaa gaggtcttgg tgtcaataca
     2161 atatctgcat ccgcatacat tgtgttctgc cagaagagca cagcagtcgt tcgcccagat
     2221 cctcctcttt tggcaa
//
LOCUS       DASSIK010000170         3758 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_722032, whole genome shotgun sequence.
ACCESSION   DASSIK010000170 DASSIK010000000
VERSION     DASSIK010000170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3758)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3758
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_722032"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1385)
                     /locus_tag="VFI64_03165"
     CDS             complement(<1..1385)
                     /locus_tag="VFI64_03165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase I"
                     /protein_id="HET7242319.1"
                     /translation="MESALLVNRHRWKTLEHRGVAFPAEHVQRGIGIVVFGERFLLNR
                     DQEELIYAWAKKKDTHYVKDIVFQSNFLSDLKKLLPEKLKSVTKIEDIDLQEAYSLVE
                     KEVRIKEEEKEKLKLLSKEERKKISVAKKAEKEKLKAIFSKAFVDGVEVDVANWLVEP
                     PGIFMGRGQHPLRGRWKPRVRPNDVTLNLGETAQVPEGEWSKVVHDHASTWLASWIES
                     LTGKRKYVWLHDSASLRQDNDRAKYDRAKLLEKHIGKVTNEIINKMLKSRDDSKRRIA
                     TVCYLIFKLAMRVGDEKDPEEADTVGASTVRVEHIKFPRINRALCIEFNFLGKDSVPW
                     QKILEVDSEDTKGLYENLVYFMKGKSDKEEIFEDVNSSKVNAFLRSIDRKNMPNLTAK
                     VFRTYVATQVVKESLKNPPVEVNKNVNEARKVYVAKMANLPAAMTCNHKKGVDPNNPA
                     AKKSLEKFEDSV"
     gene            1564..1902
                     /locus_tag="VFI64_03170"
     CDS             1564..1902
                     /locus_tag="VFI64_03170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242320.1"
                     /translation="MNSILLSKLSVYSTTEVKEMSDVHKLAVDIVNAYVELNPKRKFS
                     YRILLPRRGDSSNSLARKLGLAVQGEILLTMKKHRLKPSIREIRYLHDEAHYGWLLMD
                     PDFMDDVIKD"
     gene            complement(1927..2622)
                     /locus_tag="VFI64_03175"
     CDS             complement(1927..2622)
                     /locus_tag="VFI64_03175"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HET7242321.1"
                     /translation="MIRASSLWPVWVVGLRSPQFLLLIVIFGVITTLVYLNATLSMDY
                     SINASLDRVNLSGNMLYILVLFASFGEIIHLIFVSIILTILRRTRKTGMILMITIVVI
                     TIIITYLKPMIAHSKPPQSVKLSSLPKGFNLEGDSMTPSARNFSYPSNHVACITAFSY
                     LIGYSLSRGLGNAKHLIWLLPFSVGLSQLILKQYYFSDMIGGFLFGLIFAILMSNILH
                     IEMPFSRNRFKIN"
     gene            complement(2788..3216)
                     /locus_tag="VFI64_03180"
     CDS             complement(2788..3216)
                     /locus_tag="VFI64_03180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system NifU family Fe-S cluster assembly
                     protein"
                     /protein_id="HET7242322.1"
                     /translation="MSDDIYREIILDHYRNPRNKGKLPLANISVHDSNPLCGDEIDIH
                     LKIESNKVEEIKFEGRGCAISQASASMLTEMVTGKDLDFVKDLKKEDILENIGLLNLG
                     PARIKCALLSLKVLKVGMVKYYVDKDPSSAEKINGDTQVY"
     gene            complement(3213..>3758)
                     /locus_tag="VFI64_03185"
     CDS             complement(3213..>3758)
                     /locus_tag="VFI64_03185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HET7242323.1"
                     /translation="GPTGVGVLYGKQQILENMAPFMAGGDMIKEVFKHHTRYNDLPYK
                     FEAGTPNIADVVGFGAAIDYLDNIGMNRVREHEISLTDYALRSLSSIDCVTVYGPRKT
                     IDRGGVLSFNIGDIHPHDLATIMNEHGVAIRSGHHCAQVLMERLNVSATSRASFYVYN
                     TKEDIDTLIYALNDARRLFGL"
BASE COUNT         1095 a          810 c          666 g         1187 t
ORIGIN      
        1 acagaatctt caaatttttc gagagacttt tttgctgccg gattatttgg atcgaccccc
       61 ttcttatgat tgcatgtcat tgccgctggt aagttggcca tttttgccac atagactttt
      121 cttgcttcgt tgacattttt attcacctcc acaggtgggt ttttcaatga ctctttgaca
      181 acttgagtcg caacgtaagt tctaaaaacc ttggcagtaa gattcggcat attttttcta
      241 tcaatcgacc ggagaaaggc attcacctta gaggaattga catcttcgaa tatctcttcc
      301 ttatcactct tacctttcat aaaataaacc aagttttcgt aaagaccttt agtatcctcg
      361 gaatctacct caagtatctt ctgccaggga acgctatcct ttccgagaaa gttgaattca
      421 atacataatg ctctgttaat tcttggaaat ttaatgtgct caactctaac agttgaagca
      481 ccgacagtgt ctgcttcctc tggatctttt tcatcaccta ctctcatcgc caatttaaat
      541 atgaggtaac agacggttgc gatcctcctc ttactatcat ccctagactt tagcatctta
      601 tttatgattt cattagtcac tttgccaata tgtttttcaa gcagtttggc cctatcgtat
      661 ttggctctat cattatcttg acgcagagaa gcagaatcgt gcaaccagac atatttcctc
      721 ttccccgtta atgactcgat ccaagaagct agccaagtag aggcatggtc atgtacaact
      781 ttgctccatt caccttcggg cacctgggca gtctcaccta aatttaaggt aacatcatta
      841 ggcctcacac gtggtttcca ccttcctctt aatggatgct gtccccttcc catgaaaatt
      901 cccggcggtt ccacaagcca atttgcaaca tccacttcaa caccatcaac aaacgcttta
      961 ctgaaaatgg cctttaactt ttctttctct gccttctttg ccaccgagat cttttttctt
     1021 tcttcttttg aaagtagctt caatttttcc ttctcttctt ccttaattct tacttctttc
     1081 tctacgagag agtaagcttc ttgcaagtct atatcttcga tttttgttac agatttcaat
     1141 ttctctggca ataacttctt caggtctgaa aggaaatttg attgaaagac aatatccttt
     1201 acataatgcg tatctttctt ttttgcccaa gcataaatta attcctcttg atcacgatta
     1261 agcagaaacc tttcaccaaa tactactata ccgattcccc tttgaacgtg ttcggcagga
     1321 aacgctaccc ccctgtgttc aagcgttttc catcgatgtc ggttaacaag taatgcagat
     1381 tccattaaat ataccgcttg tgccatggta actattgata aactttacct atcacgatta
     1441 atgctaaata attaatggaa caatttattt aatctactgc cagtatttta tctaagcaat
     1501 ggtagtattg tatttcatta acctgttcgt tcctaaggaa ttttgaattt atggtaagtg
     1561 tatatgaatt caatactcct ttcaaaactt agcgtctatt caacaacaga agtaaaagaa
     1621 atgtctgacg ttcacaagct ggcagtggac atagttaatg cgtatgttga attgaatcca
     1681 aaaagaaagt tcagttacag gatcttgctg ccgagaaggg gagactcttc aaattcgctt
     1741 gctagaaaac taggtttagc cgtgcaaggc gaaattcttc taaccatgaa gaaacacaga
     1801 ttgaaaccgt ctattagaga aatcagatac cttcatgacg aagcacatta cggttggtta
     1861 ttaatggatc cagattttat ggatgatgta atcaaggact agcgaaattt gtgaaatact
     1921 ttgcagtcaa tttatcttaa atctatttcg ggaaaagggc atttcaatat gcaatatgtt
     1981 gctcatgagg attgcaaaaa ttaagccaaa aaggaaaccc cctatcatat cactgaaata
     2041 atactgcttt aagatcaatt gcgaaagacc aacggaaaat ggaagaagcc atatcaagtg
     2101 cttggcatta ccaaggcccc tagaaagtga ataaccaatc aagtatgaga atgcagttat
     2161 acatgcaaca tgatttgaag gataggaaaa attccgagca gagggcgtca tgctgtcgcc
     2221 ctccaggttg aatccctttg ggagagagga taatttgact gactgaggtg gctttgaatg
     2281 tgctatcatt ggtttcaaat atgttataat tattgtaatc acaacaatag ttatcatcag
     2341 aatcatacct gtttttcttg ttcttcttag aattgtcaat attattgaga caaaaatcaa
     2401 gtgtattatt tcgccaaatg acgcaaataa tacgagaata tatagcatat tgccactaag
     2461 gttaacacgg tctagggatg cattaataga atagtccatg gacaacgttg cattcaagta
     2521 aactagcgtc gtaataactc caaagataac tatcaagaga aggaattgtg gcgaccgtag
     2581 acccactacc catactggcc acaggctaga tgcgcggatc aaatgttatc tctcgttcaa
     2641 ggatagccct agtaccttgt gataaaagtg gaaaagggca gaaatcatat tcgacagaat
     2701 cattttcgtc acaatgaata aagttcgatg aacatttttt atgtccatag cattataaga
     2761 tgtgtgaacg tgaacaatct gttcagttta atatacttgt gtgtctccat tgattttttc
     2821 agcggacgaa ggatccttat cgacataata tttcaccatc cccactttca atacttttag
     2881 ggataacaaa gcgcatttga tgcgagcggg accaaggttt agtaaaccta tattctccag
     2941 aatgtcctct ttctttaggt ctttgacaaa gtccaggtcc ttacctgtaa ccatctcggt
     3001 gagcatagaa gcacttgctt ggcttatggc acaccccctt ccttcaaatt ttatctcttc
     3061 aactttattg gattcaattt tcaagtggat atctatttca tcaccacaca aaggattact
     3121 atcatgcaca ctaatgttag ctaatggtag cttaccctta tttcgtgggt tgcggtaatg
     3181 gtccaaaatg atctcacggt atatgtcgtc actcataatc cgaatagcct cctagcatcg
     3241 ttaagagcat aaatcagcgt atctatgtcc tccttggtat tataaacgta aaaacttgcc
     3301 ctcgaagtcg ctgatacatt aagcctttcc atcaggactt gcgcgcaatg atgtccagaa
     3361 cggattgcaa ccccatgctc attcatgatt gtcgcaagat cgtgcggatg aatatctccg
     3421 atattgaaag acaatacacc tcccctgtca attgtcttcc gagggccata cacggttaca
     3481 cagtcgatag aagatagtga tcgtaaagca taatctgtca agctaatttc atgttctcta
     3541 actcgattca tccctatatt gtcaagatag tcgatagccg ccccgaaccc tacaacatcc
     3601 gcaatattag gagtaccggc ctcgaatttg tacggaagat cattgtaacg ggtgtgatgt
     3661 ttgaaaactt cctttatcat gtcgcctcca gccatgaagg gagccatatt ttccaggatt
     3721 tgttgttttc cgtaaagaac tccgactcca gttggtcc
//
LOCUS       DASSIK010000171         2206 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_230790, whole genome shotgun sequence.
ACCESSION   DASSIK010000171 DASSIK010000000
VERSION     DASSIK010000171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2206)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2206)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2206
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230790"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            430..738
                     /locus_tag="VFI64_03190"
     CDS             430..738
                     /locus_tag="VFI64_03190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242324.1"
                     /translation="MVDAGILAPEKTAFIAYNIGVYESVQKFGNLITSGKITVDTDVP
                     KVAELLSESSAFYDPEMIAGLINAILLHNTKSSIIDRVTAEQVRYVMNQLKATGISLP
                     "
     gene            1181..1597
                     /locus_tag="VFI64_03195"
     CDS             1181..1597
                     /locus_tag="VFI64_03195"
                     /inference="COORDINATES: protein motif:HMM:NF016098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242325.1"
                     /translation="MDTGDTRSIDVLEVHSNRNAYKILKLVSMKQDGYTIEQLNKVLE
                     LTKKQLYFRIKKLAKTGLVKRQNGKISTTVLGNSVINAMRPVHDALRIHIQLKAIDTF
                     ALSGGNSRREINLLIDKMIEDGTIRKMIKKVPTGVQ"
BASE COUNT          719 a          372 c          437 g          678 t
ORIGIN      
        1 ttccgtgctc gcacaaatag gtcttttaga cagtacaaat ttaccaatca taggtatcga
       61 acagtctaga aaactccaag agatttcctc acccaagaaa aaaatcttag ccaaaagaca
      121 ataggctgtg ttcaccgcga agtacaggtc aaaatagatt tccacaatca atgtgtctaa
      181 acattcgaga atatgatcga gtctgcccaa ctaaagctcc ataatatgga ttggcttagc
      241 gtttaaatgt atacatctat atcgaagttg tcgatgaata gtggtgctat accattaatc
      301 aatttgagaa cttgattcca atcactatgt gaagtggtaa aatgaacaag ataatttatt
      361 ctaggctgtc ttgccttaat gtcccatgta tcctaacatt ttatttgtag gtaattttgt
      421 taatagaata tggttgatgc tggtatttta gctcctgaaa aaactgcgtt tatagcgtac
      481 aatatcggag tatacgaatc agttcaaaaa tttggcaatc tgatcacaag tggaaaaatc
      541 acagttgata ctgatgtacc taaagtagca gaattgctat cggagtcttc agctttttat
      601 gatccagaaa tgattgccgg gttgataaac gcgatattgt tgcataacac aaaaagttct
      661 attatagaca gggtaacagc tgaacaagtc agatatgtaa tgaatcagtt gaaagccaca
      721 gggatttccc ttccatgata ataaatttat tactagttag agctttgatt tgtcataatc
      781 aatgatgtgt cgtaacctaa gaaactcgta caatctacct acgaaagcta tcactattga
      841 gtaaaggatt tccctgatga acattcgaaa gtttgaagtc tattgtaagt acatcattca
      901 tgctgatttt ttgccgatca tgtcgttcta atgaatgaat aaatgagtgg gtgggtgatc
      961 tgagaattgc cgccaaaaat catccccctg ccatgcctac cgcagatctt tgaattatgt
     1021 ttttgttgtg aattgatttc attgtgcagt gggtattgtg gaaggtctgt tatttgccaa
     1081 ttcggattta ttggttaatt aaatgaaaag ttcagcgaca gagacatttc ttgtcgaatt
     1141 ctctaaccaa acttaattat actatttcac taaatccggc atggacacag gggacactcg
     1201 aagcatagat gttttggaag tgcactccaa ccgtaatgca tacaagattt tgaaacttgt
     1261 aagtatgaaa caggatggtt acactatcga gcaattaaat aaggtattag agttgacaaa
     1321 gaaacaatta tactttagaa ttaagaaatt agcgaaaaca ggacttgtaa agagacaaaa
     1381 cggtaagatc agcactacag ttcttggcaa ttcggtaata aatgcgatga ggccggtaca
     1441 tgatgcattg agaattcaca tccaattgaa ggctatagat acttttgcac tatctggagg
     1501 aaatagcaga agagaaatca atttgttaat tgataaaatg atagaagatg gaaccatcag
     1561 gaaaatgata aaaaaggtcc cgactggagt tcagtaagtt agtttacact atagttgctt
     1621 ccccaggctt aatgatacca taacctaaaa tcaaagttgt gcaacatcga ttggaaatgc
     1681 tctcgactcc ggatttcttt tgtcatgaag caccaatgag taaaccttag tcttttggat
     1741 atactgatat atgggtctga ctattctggt taatgaattc ccgtttgtgc gcaaacaaat
     1801 taaacaggta agtctttatt ccagtatcaa aaacttcttg atctttccat tatgagtatg
     1861 actgaaagta tcgattagta tcgatactat ccccaacctt attatggaat atgacaggaa
     1921 tgcaatcgtt ccatctagtt tatagctgcc gggtgaaatg gcaatagttt atcggtgagg
     1981 ggtgggagga atcgacacct tgggaagtgt aatttggcat ggctcattgg tttaccggac
     2041 atcatcaaat ggtaagatga catttgcaat taatctagtc gaagtgttcg aaaccgaaat
     2101 tgatacttac ggcatttttt ccgagagggt atgggagagg caataattat cttaaccaat
     2161 tctttcttga atgccagact cattcttggc tctattattt ttgcca
//
LOCUS       DASSIK010000172         2122 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1117215, whole genome shotgun sequence.
ACCESSION   DASSIK010000172 DASSIK010000000
VERSION     DASSIK010000172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2122)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2122)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2122
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1117215"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(179..1069)
                     /locus_tag="VFI64_03200"
     CDS             complement(179..1069)
                     /locus_tag="VFI64_03200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242326.1"
                     /translation="MTISPITTNKLYNAFSLVTRSRKRKLISMAFACLVVMNILMVFS
                     SSEIRPVMIDLTAVLTSGAAFLTSGTAILLAYLGKHKLESYRWLFTGLMFWFSAEVIW
                     AFTRQVLGIEIPYPSIADGAWIVGYGFFAIYIYRILEKMGKTNPIDKNMVVLISVAVA
                     LSLAYVLNLTYGVADLLSAAQDIIATIVSFAYPVLDGLLLVPSMVILWSFRKGDPSSN
                     QWKMMSVSFVLLTIGDIGFCYCFALAPSVAEEFEWVWAIFYNTGYICIVAGVLWSISF
                     TNNRQFINNKSEMEDRLKSK"
     gene            1369..>2122
                     /locus_tag="VFI64_03205"
     CDS             1369..>2122
                     /locus_tag="VFI64_03205"
                     /inference="COORDINATES: protein motif:HMM:NF013360.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0016641 - oxidoreductase activity, acting
                     on the CH-NH2 group of donors, oxygen as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysyl oxidase family protein"
                     /protein_id="HET7242327.1"
                     /translation="MKLTMTICILIGLCLVLPTLGLGKWYLSDVYAAKCNTNGGLIPD
                     LQTVVPQHLQLVNDQQHEVLRLTNGIANTGDGVWQMVPVIPADKDSPQKANQQFLDAS
                     GNIVATCSTGSVSVYHPAHKHFHISGVASFAVHSGKVDGPIIGESLKVTSCLIDWVRL
                     EGNSPDNERGYSSCDSGVQGISPGWVDQYHMALEGQSIDITPIPDGTYYLVSKSNPDG
                     FFIEKTLKNNEAWVKFNLLRDSNGNPKIEITGH"
BASE COUNT          657 a          423 c          418 g          624 t
ORIGIN      
        1 gtaattatat ccatagaagg ttgatcagaa atcacttgta ggacttgtaa tttagatact
       61 cccaagtttg gtgttttcac atttcatcgt caaatcattg tgtgcaacaa aggctttaac
      121 gcatacatat tagttgcatg aacatcgaac gttgttgtgc tgtttccacg tccctcgtct
      181 acttcgactt tagtctatcc tccatctcgc tcttattatt gataaattgt ctattattgg
      241 taaatgaaat agaccagagc acaccagcaa cgatacaaat gtatccagta ttgtaaaata
      301 ttgcccatac ccattcaaat tcttcagcca ccgatggtgc cagtgcaaag cagtaacaaa
      361 atcctatgtc acctatagtt agtaatacaa aagagactga catcattttc cactgatttg
      421 aggatggatc ccccttccgg aagctccaaa gtattaccat ggaaggaacc aataataaac
      481 catccaagac gggataagcg aagcttacta tagtcgcgat gatatcttgc gccgcactaa
      541 gaaggtcagc tacaccataa gtcaagttaa gtacgtatgc tagtgatagt gctactgcta
      601 ctgatatcaa aacaaccatg tttttatcaa tagggtttgt ctttcccatt ttttccaata
      661 ttcggtatat gtaaatcgca aagaatccat atccaacaat ccaagccccg tcagcaatcg
      721 aaggataggg aatttcaatt cctagtactt gtcttgtgaa tgcccagata acctctgcag
      781 agaaccagaa catcaagcct gtgaacaacc accggtaaga ttcaagtttg tgtttcccca
      841 ggtatgccaa caaaattgca gtccctgaag ttaagaatgc tgcccctgaa gtcagaacag
      901 ctgtgagatc tatcataact ggtctaattt cggatgaact aaagaccatc agaatattca
      961 taacgacaag gcaagcaaaa gccatggaaa ttaatttcct tttcctactt ctcgttacca
     1021 gactgaaagc attatacaat ttgtttgttg taataggaga gattgtcaac ttgataatct
     1081 acatcctatc atttatagct caatttagtt ttcaggcttg tttactctac cctggttaat
     1141 aaattcatat tctttgagga attcttattc tgtcaattaa ttaaacttca aatatcttaa
     1201 cactaatgag gtatcctgat ttggcagaca cactaattgt cgtgttgaaa aaggacgcaa
     1261 ggagaaatgg tttggcaaat aggcgtgggt tcgaaaaaat gtttcaagtt catcttcgaa
     1321 aaaccttaag agtaggtata tagtacgagt tacgtgattc tataaagaat gaaattgact
     1381 atgacgattt gtatcctgat aggtctatgc ctagtgttgc cgacccttgg tttgggtaag
     1441 tggtacttga gtgatgtata tgcagctaaa tgtaatacaa atggtggact catcccggat
     1501 ctgcagacgg tggtcccaca acatttgcaa cttgtcaatg accaacaaca tgaggtcttg
     1561 agacttacaa atggtatagc caatacgggt gatggagtct ggcagatggt cccagtaatc
     1621 cctgctgaca aggactctcc tcaaaaggca aaccagcaat tcctagatgc tagcggaaat
     1681 attgtcgcta cgtgttcgac tggtagcgta tctgtatatc atccagctca caagcatttc
     1741 cacattagtg gtgttgcaag ctttgcagtt cattcaggaa aggtagatgg cccaataata
     1801 ggagaatctt tgaaggttac ttcctgtcta attgattggg tgagacttga gggaaattct
     1861 ccagacaatg aaagaggata ttcttcctgt gattcgggtg ttcagggcat tagtcctggt
     1921 tgggttgatc aatatcatat ggccttagag ggacaatcca tagacataac ccctatacca
     1981 gatggaacat actatcttgt cagtaagtct aaccccgatg ggttctttat agaaaagaca
     2041 cttaaaaaca atgaagcgtg ggttaaattc aatcttttgc gcgatagtaa tggaaatccc
     2101 aagatagaaa ttaccggtca tt
//
LOCUS       DASSIK010000173         2951 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_330120, whole genome shotgun sequence.
ACCESSION   DASSIK010000173 DASSIK010000000
VERSION     DASSIK010000173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2951)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2951)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2951
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_330120"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..386)
                     /locus_tag="VFI64_03210"
     CDS             complement(<1..386)
                     /locus_tag="VFI64_03210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242328.1"
                     /translation="MNIEKEIGNIIRISVWRIPKTNHEALMQLEKPIREFFKNAGVNQ
                     EIFQLKVGSDEQDKMAEQMGMTNIAKTIAAKQDEEVWLELQFYRDQKHLDDLVAEVQK
                     NENALKIGKQFMDLLTPGSCIEGWFD"
     gene            complement(554..1729)
                     /locus_tag="VFI64_03215"
     CDS             complement(554..1729)
                     /locus_tag="VFI64_03215"
                     /EC_number="3.1.1.103"
                     /inference="COORDINATES: protein motif:HMM:NF012371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase domain-containing protein"
                     /protein_id="HET7242329.1"
                     /translation="MYRTKSRTMSLGLLLIATLALSCLSTMRNNVIAQPTTSQSATAK
                     ELSILSLNKVKRYLPDVSIVVGIISPNGTQVYSYGNISQANSTKVDGNTIFDIASITK
                     TFTTILLADMVKRGLVSLDDPIGKYLPATVKIPTYNGHEITLKDLATHTSGLPDFPAG
                     WIRNHTYTTQQVYSFLSNTSPVSEPGIKANYSDIGMGLLGHILSIKAGVPYPQLVKDR
                     ILNVLGMDSTGIAMNSTAITLSDALKSRLAKGHIGGKEVNLEFIPDAIQPAGALHSTA
                     NDLLKYLAANIGLIHTSISDLIQETHLIRHEYPRELDPFPFPSNKSLSASYIGLGWFI
                     ETNLGTEVIQHDGGIDGYSTLIGFNPTKQEGVVILCSCDGRDISLPMIEPWRSLLYR"
     gene            complement(1997..>2951)
                     /locus_tag="VFI64_03220"
     CDS             complement(1997..>2951)
                     /locus_tag="VFI64_03220"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HET7242330.1"
                     /translation="LSSLKPDEVEIDLEYCGICHSDLSMLKNDWGFTRYPFVPGHEAV
                     GRVAAIGNMVNHLSVGQYVGLGWRARSCLVCDQCLSGHHNRCLKGEDVIVGRHGAYAN
                     KVHCQALWAFPLPEKINPKTAGPLFCGGITVFNPIIQNNIKPTDHVAVVGIGGLGHMA
                     IKFLDSWGCEVTALSTNPEKEREAQEFGADHFLNSRDPDALKSHANTFDMILVTANVD
                     LDWDSYISTLRPGGKLHIVGAASQVRASVFPLISGEKSIGGSPIGGPADILKMLDFCA
                     RHAIEPVIEEFPILRVNEALAHLQSGNARYRIVLKNDFKKE"
BASE COUNT          851 a          642 c          530 g          928 t
ORIGIN      
        1 tgatcgaacc atccttctat gcatgaacct ggggtaagta gatccataaa ctgtttacca
       61 attttaagtg cattttcatt tttttgcacc tctgctacaa gatcatctag atgcttctga
      121 tctcggtaga attgtaactc caaccaaact tcttcgtctt gtttggctgc tatagttttc
      181 gctatatttg tcattcccat ctgttcagcc attttgtcct gctcatctga ccctaccttg
      241 agctgaaata tctcttggtt tacgccagcg ttcttaaaaa attccctgat cggtttttca
      301 agctgcatca acgcttcgtg attcgttttt ggtatccgcc agacagagat acggataata
      361 tttcctattt ctttctctat attcaaatcg gtaccattag ttattcaccg catctatata
      421 aaaaaaatga tggggattcg aattctcgtc aatcagatga ggattcttac ttggtatcaa
      481 tattttgtcg ctttggcatt aaaacccacg tccgggtttg gcgcgttaca atacactagt
      541 gtatgtaatc caactaccgg tacagcaaac ttcgccatgg ttcgatcatg ggtaaagata
      601 tatctctgcc atcgcagctg cataatatta ctactccttc ttgcttggtt ggattaaatc
      661 caataagggt actataacca tctataccac cgtcatgctg tataacttct gtacctagat
      721 tagtttctat aaaccatcca agaccaatat aactggcgct taaactcttg ttggatggaa
      781 acggaaaagg atcaagttct cggggatact catgtcttat cagatgtgtt tcttgaatta
      841 ggtcgcttat actggtatga attaagccga tattagcagc cagatatttt agcaagtcat
      901 ttgcagttga atgtaatgct cctgccggtt gaattgcatc tggaatgaat tcaagattaa
      961 cttctttacc accaatatga cctttagcta atctggattt aagggcatca gaaagggtta
     1021 ttgccgtact attcattgca attcccgtac tatccatacc cagcacgttt aagattctgt
     1081 ccttaacaag ttggggatat ggaacacctg cttttatgga tagaatatga cctaaaagac
     1141 ccataccaat atcagaatag ttagccttga ttcctggttc actcacgggt gaagtatttg
     1201 aaagaaaact atagacctgc tgagtagtat aggtatggtt tctaatccat cccgcaggaa
     1261 aatccggtaa tcctgatgta tgtgtagcta gatccttaag tgtaatttca tgtccattgt
     1321 atgttggtat cttaacagta gcaggaaggt actttccaat tggatcgtcc aggctaacta
     1381 aacctcgctt taccatatca gctaatagga ttgtagtaaa cgtctttgtg atagaagcaa
     1441 tatcaaagat cgtgtttcca tctacttttg tactatttgc ttgagatata tttccatagc
     1501 tatatacttg agtaccattt ggactaatga ttcctaccac aatggatacg tctggtaaat
     1561 acctctttac cttgtttaat gacagtattg ataactcctt tgcggtggcg gattgagaag
     1621 tagtaggttg ggcgatcaca ttattgcgca tagtagataa acaagataat gcgagtgtgg
     1681 ctatcaataa caatcccaga gacatcgtcc tactttttgt tctatacaac tgtgctgcta
     1741 gtaatctgaa acttgtattt gaggtttttt gattagacta cacccaagat tagttattat
     1801 tatgatatcc gaatttaatt tcgttcagtc cccatttcta tcatggaatc tattcctgga
     1861 ttgggattca atcttcgtcc atcaaatatg gattgtatct taattaatta atagtttcta
     1921 agggcatagt acattatgga ggcaataatt ttatcgaagc ttgaagctcc ttcaataacg
     1981 aactcttgta aactccttat tccttcttaa aatcattctt taagactatt cgataacgtg
     2041 cgttcccgga ttgaagatgt gccaaggcct cattaacgcg taaaattgga aactcttcta
     2101 ttaccggttc gatggcgtgg cgagcacaaa aatcaagcat cttcaaaata tcagctggac
     2161 ctcctatagg tgaaccacca atagacttct cgccagagat caatggaaaa acgctagccc
     2221 ttacttgcga agctgcgccc acaatatgta acttgccacc aggacgaagt gtacttatat
     2281 aggaatccca atccaggtca acgtttgcag taactaatat catatcaaaa gtattcgcat
     2341 gactctttag agcatcagga tcccgagaat tcaagaaatg atcagctcca aactcttgcg
     2401 cttccctctc tttttcagga ttggtagaca acgcagtaac ctcgcatccc catgaatcaa
     2461 gaaatttaat agccatgtgt cctaatccac caattccaac cacagctacg tgatctgtag
     2521 gtttgatatt attttgaata atagggttaa agactgtaat tccaccacaa aataacggac
     2581 cagcagtctt ggggttaatt ttctcaggca aaggaaaggc ccatagcgct tggcagtgta
     2641 ccttatttgc gtaagcccca tgtctaccaa caattacatc ttctcccttc aagcaacgat
     2701 tatgatgacc acttaagcac tgatcacata ccaggcaaga acgagctcgc caacctaatc
     2761 caacatattg tccaacactt agatggttta ccatatttcc gatcgcagcc actcggccga
     2821 cagcctcgtg tcccggtaca aacggatacc gcgtaaaacc ccagtcattt ttaagcatgc
     2881 tcaaatcact gtgacaaata ccacaatatt ccagatcgat ctctacttca tcaggtttta
     2941 aagagcttaa c
//
LOCUS       DASSIK010000174         4748 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_330272, whole genome shotgun sequence.
ACCESSION   DASSIK010000174 DASSIK010000000
VERSION     DASSIK010000174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4748
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_330272"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..358)
                     /locus_tag="VFI64_03225"
     CDS             complement(<1..358)
                     /locus_tag="VFI64_03225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242331.1"
                     /translation="MMKNWFVFSLALFASVTSIVVSYSFAEGTTISDVQSQLGNSNAS
                     SSTDIVSLVENVTVTKFDILSPNQLGVELRYSGTGNAPAVKVDVSAINIDFKLADDIT
                     NELNILNASTSDSNSNQ"
     gene            complement(691..1155)
                     /gene="mntR"
                     /locus_tag="VFI64_03230"
     CDS             complement(691..1155)
                     /gene="mntR"
                     /locus_tag="VFI64_03230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator MntR"
                     /protein_id="HET7242332.1"
                     /translation="MTPLEKAKNNRLEAIRDANSAKKEDRTDRMEDYLEVIYELVEQK
                     GYATTVDISTYLNVSSPSVTKMTQRLDETGYLKYEKYRGIRLTDEGVRIAQNIRNRHG
                     LLAEFFKMIGVDEESANSDAEGIEHHLHPETIKRLEDFMNVLKKYPSLFKRV"
     gene            complement(1245..2564)
                     /locus_tag="VFI64_03235"
     CDS             complement(1245..2564)
                     /locus_tag="VFI64_03235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent cation transporter"
                     /protein_id="HET7242333.1"
                     /translation="MEREDGSVGSSYRITKKTILFGVVPFVVLGVMVMILAYSPGMLF
                     QSSIKPLPQVSIEKVEFLDNSIVAYIRNTGPSEITIAQADVNDRIHPAAIEPGRTLSR
                     LADARVTIPFIWNAGEPYVIGITTADGTRFSKSVASAAPAPRPTVGQASTFALIGIYV
                     GVIPVMMGLLWYPFIRRLSANKYNFFLSLTVGLLVFLGIDALLESNQIAAALAPAFNA
                     QILIILIAILTFISLLYVSKKLVERASRQSKTDTEYETEIVSHSAPDSEHTIDTHSSR
                     PSLGSSRQQLLIRPIAISMMISIGIGLHNFGEGLAIGAAVLLGEVALSSFLILGFTLH
                     NTTEGLAIVAPMAKSKRIPITKLLIMGLIAGFPTIVGAWIGGFLYSPIATIIFLSIGA
                     GAIFQVVYSVGSWMHHTTGGRGLMTNAAIISGFAAGMLIMYLTGLLI"
     gene            complement(2564..3733)
                     /locus_tag="VFI64_03240"
     CDS             complement(2564..3733)
                     /locus_tag="VFI64_03240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HET7242334.1"
                     /translation="MRSNLLIALVGVAVSIAVVVTFSTGLNRGPLSAQDPSKRENFGG
                     HSPGYPILGTTGDVLDPTSLNIDPKTAVIDPMKYLREFNYGRTTALSNGTSLREYTLI
                     ASDQQTKEVSPGVFYNVWTFNGTIPGPTLRATEGDLVRVTLINNGTKFHSIHFHGIHP
                     SEMDGVFEGIAPGGKFTYEFTAEPFGVFPYHCHMQPLEEHITHGLYGVFIIDPKKPRA
                     DADEMVMVMNGYDTDFDAENNFYTVNGIPYYYMHHPIQIDKNRLIRIYLLNILEFDPI
                     NNFHLHANMFDLYRTGTKLIPDEYTDIVTMSQGERGILEFSYKYPGKYMFHAHKTEFA
                     EKGWVGLFLVKDSTAESATENSNFTSIGRNATYSTSEFSNTGNGTTSFVKTGGLN"
     gene            3903..4142
                     /locus_tag="VFI64_03245"
     CDS             3903..4142
                     /locus_tag="VFI64_03245"
                     /inference="COORDINATES: protein motif:HMM:NF013224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HET7242335.1"
                     /translation="MVDMYVLIVCDLGRTEEIASDLQEIDKVKEVYMISGAYDIIVKM
                     SGPSPKDLEHVYSKIRNVSGIKTTITLVGYTKNGY"
     gene            complement(4206..4499)
                     /locus_tag="VFI64_03250"
     CDS             complement(4206..4499)
                     /locus_tag="VFI64_03250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242336.1"
                     /translation="MSKSAGESIRPFKPLFAAGMILVAFGIFCIWIGSSVISLKEEGE
                     GFKIIGIRFLIGGIVSITLGFLAKYYEFIKYFLKHISYKRRHGDDERSDWYKS"
BASE COUNT         1417 a          948 c          891 g         1492 t
ORIGIN      
        1 attggttgga attagaatca ctagtactgg cgtttagaat attgagttca tttgtaatat
       61 cgtcggctag tttaaaatct atatttatag cagaaacatc tactttaaca gcaggtgcat
      121 ttccagttcc agaatacctc aactcaacac ctagctgatt aggagagaga atatcaaatt
      181 tagtaacagt aacattctct accaaactca caatgtctgt actactactg gcattagaat
      241 ttcccaactg gctttgcacg tctgaaattg tggtcccctc tgcaaatgaa taagacacaa
      301 ctattgatgt aacagatgcg aataacgcta aggaaaatac aaaccaattt ttcatcattt
      361 tcttatttcg tccactttat attactagag atatttaaaa ttgcctgcga aaaaaataaa
      421 aaaacgagta gccattagtc attaccaaat ctcagattaa ctatgctttt gtaatttggt
      481 tagcatatta catatttgaa tgaactattg agatgttagt aaaaaatcga gaattgtata
      541 ataagtgatt ctaataattt ttcaatcttt tgaatcgcag gataaggaat atttcctcat
      601 aatcatctta taatataact gacttgcagc tcgtccagaa ttcaaccaac aacaacagac
      661 tgatattttg cagaggcttc gtaaggaacg ttaaactctt ttgaataatg agggatattt
      721 ctttagaaca ttcatgaaat cctcaagtct cttgatagtt tcaggatgta aatgatgctc
      781 tataccttcc gcatcactat tagctgattc ttcgtcaact cctatcattt tgaaaaattc
      841 agcgaggaga ccgtgtctat tacgaatatt ttgggcaata cgaactcctt cgtcggttaa
      901 cctgatgcct ctgtactttt catattttag atatccagtt tcgtcaagtc tctgcgtcat
      961 tttcgttacg ctgggcgaac tcacgtttag ataagttgaa atatccacag ttgtggcata
     1021 ccctttctgt tctactagtt cataaataac ttcgagataa tcttccattc tgtccgttcg
     1081 atcctccttc tttgcgctgt ttgcatcacg aatagcttcg agcctattgt tcttggcttt
     1141 ctccagtggt gtcatttcgt tgagtttatt tgtcagtgct attccgcctc ctcctattca
     1201 gtctctctgt taataaattt ataatataca taggtcatac tccactagat taagagtcct
     1261 gttagataca ttatcaacat tccagctgca aagcctgata taattgcggc attggtcatt
     1321 aatcctcttc ctccagtggt atgatgcatc caagagccta ctgagtaaac tacttggaaa
     1381 attgcacctg cccctattga cagaaaaatt atagttgcaa ttggagaata caggaacccg
     1441 cctatccatg cccctacaat tgtaggaaat ccggctatca gtcccattat caataacttt
     1501 gttattggaa ttctcttact cttagccata ggggcaacaa tagccaatcc ctctgttgta
     1561 ttgtgcaatg tgaatcctaa aatgaggaat gagcttaaag ctacttctcc tagtaagact
     1621 gccgctccta ttgcaagacc ttctccgaaa ttatgtaagc cgatcccaat tgaaatcatc
     1681 atagatatcg cgattggtct tatcagtaat tgttgtcgtg atgatccaag agaaggccta
     1741 gaagaatggg tatctattgt atgttcagaa tctggtgcag aatggctgac aatttcagtt
     1801 tcatattcag tatctgtctt ggattgtctt gaggcacgtt caactagttt cttcgaaaca
     1861 tagagcagtg atataaaagt gagaatagca atcagtataa tcaaaatctg tgcattaaag
     1921 gcaggcgcaa gggctgctgc aatctggtta ctctcaagta gagcatctat cccgagaaaa
     1981 actaacaatc caacagttag gctaagaaaa aagttgtact tgttggcact taaccttcta
     2041 atgaagggat accataaaag acccatcatc acaggaataa cacctacgta tataccaatg
     2101 agtgcaaatg ttgatgcctg tccaactgtt ggccgcggcg caggagctgc ggaagcaacg
     2161 cttttgctaa atctagtacc atcagccgta gttatcccaa taacgtacgg ctcgccggca
     2221 ttccagatga aaggtattgt tactctagca tctgcaagtc tagatagcgt ccgacctggc
     2281 tctattgctg caggatgtat cctatcattt acatcagctt gtgcaatggt aatctctgaa
     2341 ggtccggtgt tccttatata agcaacaatg ctgttatcta aaaactctac tttttcgatg
     2401 gaaacctgag gaagtggttt gatggagctc tgaaatagca ttcctggaga gtacgctaat
     2461 atcattacca ttaccccaag tacgacgaat ggaacaactc caaacagtat tgtcttcttg
     2521 gttattcggt agctactgcc gacactgcca tcctctcttt ccattaattc aaacctcctg
     2581 ttttcacaaa actagttgta ccattacctg tattgctaaa ttcagatgta gaataagttg
     2641 cgttacgccc tattgaggtg aagttcgaat tttcagtggc agactcagct gtgctgtctt
     2701 ttacgagaaa taatcccacc catccttttt cagcgaactc tgtcttgtgt gcatgaaaca
     2761 tgtattttcc aggatacttg taactaaatt ccaatattcc cctttccccc tggctcatgg
     2821 taacgatgtc tgtatattca tcgggaatta atttggttcc tgtcctgtag agatcaaaca
     2881 tattggcatg taggtgaaag ttgtttattg gatcaaactc aagaatattg agcaggtaaa
     2941 ttcgaatcaa tctattcttg tcaatttgaa tcgggtggtg catatagtaa tagggaattc
     3001 cattgactgt gtaaaagttg ttttcagcat caaagtcggt atcatatcca ttcatgacca
     3061 tgaccatttc atcggcatcc gctcggggtt tcttgggatc aattatgaat accccataga
     3121 ggccgtgggt gatgtgttct tcgagaggtt gcatatggca gtgataggga aagacaccga
     3181 atggttcggc tgtaaactca taggtaaatt tacctccagg tgcaattcct tcaaatacac
     3241 catccatctc agatgggtgg ataccgtgaa agtgtattga atgaaattta gttccattat
     3301 taattaaagt gactctaacc aaatcgcctt ccgtggctcg taaagtcggg cctggtattg
     3361 tgccgttaaa tgtccataca ttatagaaca caccgggaga tacttcttta gtttgttgat
     3421 ctgatgcaat taacgtgtat tctcttaggg atgtcccatt tgaaagtgcc gttgttctac
     3481 cgtaattaaa ttccctgaga tatttcatcg gatctattac tgcggttttt gggtcgatgt
     3541 taagggaagt cggatccaaa acgtcgcctg ttgttccaag tatagggtat cctggactat
     3601 ggcctccaaa gttctccctc ttggagggat cttgggcact gagaggaccc cggttcaatc
     3661 ctgtagaaaa ggtgacgaca acggcaatag atactgcaac accaacgagt gctatgagca
     3721 ggttactcct caaacttgat taactatata caaattgttt ggatacatta ataaatgttg
     3781 cctttggtta acattttatt attagcactc aaatgtattc tgaccaaatg cctgaccaaa
     3841 acaaaaaata gaaatttcat gaaaaagtat ttcagacgac ttagactatg tagtactatc
     3901 caatggttga catgtatgta ttgatagtct gtgatcttgg aaggacagaa gaaattgctt
     3961 cagaccttca agagattgat aaggttaaag aggtttacat gattagcggg gcttatgaca
     4021 taattgtaaa gatgtcaggt ccatctccaa aagatctgga acatgtatat tcaaaaatta
     4081 ggaatgtcag tggcattaag actaccatta cgctagtagg atataccaaa aatggctact
     4141 aaacaggagt aacagaataa ttaatttaca agatcccacc tttatacaaa aatatgtaaa
     4201 tgccttcagg acttatacca atcagagcgt tcgtcatccc catgtcttct tttgtaactt
     4261 atatgtttta agaaatattt aatgaattca tagtattttg ccagaaaacc aagggtgatg
     4321 gaaactattc cacctattag aaaccttatg ccgattatct taaacccttc gccttcttcc
     4381 ttaagtgaaa tgacgctgct ccctatccaa atgcagaata taccaaacgc tacaagtatc
     4441 attcccgcag caaaaagtgg tttaaatggc ctgattgatt caccggctga ttttgacatt
     4501 ccgcgggtac aatgaacgat tgccgttata ttgtatttac gtatgtaatc tctaattgtg
     4561 tgataatgta gagatctact tcagtccaca atatttgatt agtagattac tactaatgca
     4621 tctgaaatga acttgaccaa acgaatgaat gatcggtgag atataagact gtgagattca
     4681 tatagtatgt gggcacctta ttgtcgtggg ctatcacaaa gtaccgtcca ttattttact
     4741 tctcgacc
//
LOCUS       DASSIK010000175         2829 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_330363, whole genome shotgun sequence.
ACCESSION   DASSIK010000175 DASSIK010000000
VERSION     DASSIK010000175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2829)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2829)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2829
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_330363"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..757)
                     /locus_tag="VFI64_03255"
     CDS             complement(<1..757)
                     /locus_tag="VFI64_03255"
                     /inference="COORDINATES: protein motif:HMM:NF000796.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase electron transfer
                     subunit"
                     /protein_id="HET7242337.1"
                     /translation="MPIDIDLMRVARISETVMETSSVKTLVFKDRLGSIASAGQFLMV
                     WIPRVEEIPMSVMVSRREGHAAVTVKKHGKGTTALFEMDVGDFIGLRGPYGNRFTIST
                     EFTNVLLIGGGTGLVPLLRLAVNITRLNIRCTLIIGARTKDEVIFEEYARKFLSDSKG
                     KVIVTTDDGSYGLKGTASDGMVKTIGEERYDCVYTCGPEIMMKKIFEISKEQSLPVQA
                     SLERYMKCGIGICGSCCIDRWLVCRDGTVFDSNQ"
     gene            complement(741..1667)
                     /locus_tag="VFI64_03260"
     CDS             complement(741..1667)
                     /locus_tag="VFI64_03260"
                     /EC_number="1.3.1.14"
                     /inference="COORDINATES: protein motif:HMM:NF013355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004152 - dihydroorotate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase"
                     /protein_id="HET7242338.1"
                     /translation="MKGEKQSDTLSVNVGPMRLRNPTMLASGILGISQDIFERLYNNN
                     IGAIVTKSISVDPMKGYANPTIVPLGNKTYLNAVGLSNPGVYAFSHEIMRNKFVPIVV
                     SLVGSSEKDFPKMISFLDSLNVIGYEINLSCPHVSKMGMEIGDDPEMVSLIIRTIKRH
                     TRKPISVKIGIGSMDVVEIARVAVESGADMITAINTVRAMKIDVQSMIPVLSNVIGGL
                     SGKAIKPIGIRCVYEISKVLNVPVIGCGGVSSWEDVVEYMIAGASAVQIGSILGNSDD
                     TFFNRITSGLKRYLARKGIKNIGEIVGLAHRY"
     gene            1812..2624
                     /locus_tag="VFI64_03265"
     CDS             1812..2624
                     /locus_tag="VFI64_03265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HET7242339.1"
                     /translation="MVKFFDPHIHMYSRTTDDYEMMARAGIKVIVQPSFWLGSPRTTT
                     GTFEDYWEHMITFETERAGGFGIEQFVCISVNPKESTARPLAFQALEAMSKYLDRERV
                     VAIGEIGYNLINDAEEELFVRQLEISSKKKMLAMIHLPHMNKAEGIRRTENVIKTHNF
                     GSSYTNNILVDHNTEETIEKTLDLGFWAGLTVYPHTKLSPARAIKIIQKHGIDRIMVN
                     SAADWGISDPLSVPLVAKEMRKKGFSAEKIEAVTFQNAYDFFRRSPKFTWRP"
     gene            2638..>2829
                     /locus_tag="VFI64_03270"
     CDS             2638..>2829
                     /locus_tag="VFI64_03270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HET7242340.1"
                     /translation="MKLAFSTNAFKNYALDEAISIISKLGYEGVEILCDVPHAYPGTM
                     PEERIADIKNLISRKGISLS"
BASE COUNT          858 a          614 c          510 g          847 t
ORIGIN      
        1 attggttgct gtcaaaaaca gtgccatcac ggcatactaa ccaacgatct atgcagcaac
       61 taccacatat tcctatccca cacttcatgt atctctccaa acttgcttga acgggtaaag
      121 attgctcttt tgatatttca aaaattttct tcatcataat ctcagggccg cacgtataaa
      181 cacagtcgta cctttcttct ccaattgttt ttaccatgcc gtctgaagca gtgcctttca
      241 aaccatagct accatcgtcg gttgtcacta tgaccttacc tttgctatca ctcaaaaact
      301 ttctagcata ttcttcaaaa atgacttcgt ccttagttct agctcctata atcagagtgc
      361 aacgaatatt caatctagta atgttcaccg ctaacctgag caaaggcact aacccggtgc
      421 caccacctat aagtaaaaca ttcgtaaact ctgttgatat tgtaaatcta ttgccataag
      481 ggcctcttag tcctataaag tccccgacat ccatttcaaa taatgcagtt gttcctttgc
      541 catgcttttt cactgtgaca gcagcatgac cttccctccg ggacaccatt acactcatgg
      601 gaatctcttc aactcgcggg atccacacca ttaggaattg gccagcactg gctatggaac
      661 ctaatctgtc cttaaataca agagttttta cactcgatgt ttccattacg gtctctgaga
      721 tacgtgccac tctcatcaaa tcaatatcta tgggcaagtc ctacgatttc tccgatgttt
      781 tttattccct ttcttgcaag atatctcttt aatccacttg taattctgtt gaaaaaagta
      841 tcgtcactat tgcctagtat gcttccaatt tgaactgctg aagccccagc aatcatatac
      901 tctactacat cttcccaaga tgatacacca ccacatccta tcacgggcac attcaatact
      961 tttgaaattt cgtatacgca tctgattcct atgggtttga tggcctttcc cgataaacca
     1021 cctatcacgt tactaagtac aggtatcatt gattggacat caatcttcat tgctcttacg
     1081 gtatttattg cagtgatcat gtctgcaccg gattcaacgg ctactctggc gatttcaacc
     1141 acatccatcg agcctattcc aattttcact gatataggct tacgtgtgtg ccttttaatg
     1201 gttcttataa tcaaactaac catctcagga tcatctccaa tttccattcc catttttgat
     1261 acatgcggac atgacaaatt gatttcatat ccaataacat tcaaagaatc caaaaatgat
     1321 atcatttttg gaaaatcttt ttctgaagat cctaccaagc taactacgat aggtacaaac
     1381 ttattcctca ttatttcgtg agaaaaagca tatacaccag gattggatag ccctacagca
     1441 ttaagataag tcttgttacc tagggggacg atcgtgggat tagcatatcc tttcataggg
     1501 tccacactaa tggacttagt cactattgca ccaatgttat tattatatag ccgttcaaaa
     1561 atgtcctggg atattcctaa tatccctgat gcgagcatcg taggattccg aagccgcata
     1621 ggacctacat taacagaaag agtgtcactc tgtttttccc ctttcaatca tatccgttta
     1681 aagctcaagt taatatattt taacctgcga acatagatcg gtattatgtt cacaatgttc
     1741 tgtgcccccg tgaactttcc cgggaggaat aagacaaata taaagaaggc tagcgttgca
     1801 ttgtattagt cttggtaaaa ttttttgatc ctcatattca catgtactct agaactactg
     1861 acgactatga aatgatggct agagcaggca ttaaggtgat agtccaacca tctttctggt
     1921 tgggaagtcc aagaactact actggcacat ttgaggatta ttgggaacac atgataactt
     1981 ttgaaactga aagagcaggt ggttttggca ttgaacaatt tgtttgtatc tctgtaaatc
     2041 caaaagaatc tacggctcgg ccgcttgcct tccaggcatt agaggcaatg tcgaaatatt
     2101 tggacaggga aagggtggtt gcgatcggtg aaataggtta taatttgata aatgatgcag
     2161 aggaagagtt gtttgttcgt cagttggaga tatcttcaaa gaaaaaaatg ttagccatga
     2221 ttcatttacc acacatgaac aaagcagaag gaataaggag aacagaaaat gtcataaaga
     2281 cacataattt tggttccagt tacactaaca atattctagt ggatcataat acagaggaga
     2341 caattgaaaa gactcttgat ctaggattct gggcaggatt aactgtttat cctcacacga
     2401 agctatctcc agcacgagca atcaaaatca ttcaaaagca cgggatagat aggataatgg
     2461 taaacagcgc cgctgattgg ggcatatcag atccgttgag cgtacctttg gtggctaaag
     2521 aaatgagaaa aaagggattt agtgcggaaa agatagaagc ggtaactttc caaaatgcat
     2581 atgatttctt tagacgatcc cccaaattca catggcgacc atgagaaaaa ttttgtcatg
     2641 aaactagcat tcagcacaaa tgcgtttaaa aattatgccc tagatgaggc aatatctatt
     2701 atctccaaat tgggatatga gggagtagaa attctttgcg atgtacccca tgcatacccc
     2761 ggaactatgc ctgaggagag aattgccgac attaagaatc ttatatcaag aaagggcatt
     2821 tctctttcg
//
LOCUS       DASSIK010000176         2069 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1118200, whole genome shotgun sequence.
ACCESSION   DASSIK010000176 DASSIK010000000
VERSION     DASSIK010000176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2069)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2069)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2069
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1118200"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..93)
                     /locus_tag="VFI64_03275"
     CDS             complement(<1..93)
                     /locus_tag="VFI64_03275"
                     /inference="COORDINATES: protein motif:HMM:NF014930.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242341.1"
                     /translation="MGNILIGLEIHCQLTSLKSKLFCFCHEDYRS"
     gene            complement(93..1547)
                     /gene="gatA"
                     /locus_tag="VFI64_03280"
     CDS             complement(93..1547)
                     /gene="gatA"
                     /locus_tag="VFI64_03280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HET7242342.1"
                     /translation="MSNLYDLGALEAHRGINQGDFTAEEYVWSIIERIERVEGKVHAF
                     ITLNKENALEDAREIDKKIRTKEDAGSLAGVTVGIKDNISTHGLKTTCASKMLEDYVP
                     PYDATVVERLKNHGAIVIGKLNLDEFGMGSTTEYSRYGPTHNPWSLDFVPGGSSGGSG
                     AAVSSRECTVSLGSDTGGSVRCPASFCSVVGLKPTYGSVSRFGLISYANSLEQIGPIC
                     STVEDVVTVMNAISGHDPNDNTCFLLRSNVPYLHIKQDRAPSSIAIVKELIDGCDPAV
                     SRTIYSALDKFKEFGWESTEISLKSVNYALPSYYTIAMAEASSNLARYDNIRYGFSLP
                     VEGFEWNTYISNVRSNFGEEVKRRILIGSYVLSSGYYSKYYLKARQLRSLLRQELLSN
                     FGKYDLLVGPTMPVLPFRIGEKIDDPLKMYLMDVDTVLANLAGIPAISIPAGHSNGLP
                     IGLQLMAGPFQEQKLIDAASLLENAIDITRSPEI"
     gene            complement(1549..1821)
                     /locus_tag="VFI64_03285"
     CDS             complement(1549..1821)
                     /locus_tag="VFI64_03285"
                     /EC_number="6.3.5.-"
                     /inference="COORDINATES: protein motif:HMM:NF014716.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006450 - regulation of translational
                     fidelity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HET7242343.1"
                     /translation="MVSKDELRHLGWISRINLSEEEIETFHHQLDDTIKYIDVLETFD
                     SENLTLDYLEVDFYNLREDKTIEFTSDLIPKSSLAQEGYVKGPKMI"
     gene            complement(1871..>2069)
                     /locus_tag="VFI64_03290"
     CDS             complement(1871..>2069)
                     /locus_tag="VFI64_03290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid--tRNA ligase-related protein"
                     /protein_id="HET7242344.1"
                     /translation="ELVERMKKQGLNIGAFDYHLKVFDYGVPPHAGFGVGMERLIMSL
                     CEVENIRDVVLYPRDIDRLSP"
BASE COUNT          605 a          473 c          346 g          645 t
ORIGIN      
        1 acttctatag tcttcatgac agaaacaaaa taatttgctt tttagagaag ttagttggca
       61 gtgaatttcc aaaccaatta atatattacc catcagattt cgggactcct tgtaatatca
      121 atcgcatttt ctaataaaga agcggcatcg atcaatttct gttcctgaaa aggtccagcc
      181 atcagttgca atccaattgg aaggccattg ctatgtccgg caggaatact aattgctgga
      241 atcccagcca gatttgctaa gactgtatcg acatccataa gatacatttt taatgggtca
      301 tcaatctttt cacctattct aaaaggaagt actggcattg tgggtccaac taataaatca
      361 tattttccga aatttgaaag tagttcttgt ctaagtaatg atctgagttg acgtgccttc
      421 aagtaatatt tactataata acctgatgat aaaacgtatg atccaatcaa aattctcctc
      481 ttcacttctt caccaaaatt acttcttaca ttactgatgt aggtattcca ttcaaatcct
      541 tccacgggga gtgaaaaacc ataccgtatg ttatcatacc tggcaaggtt gctactcgct
      601 tctgccatgg ctattgtata ataagaaggg agtgcgtagt ttacactttt tagagatatt
      661 tcagtgcttt cccatccaaa ttctttgaat ttgtcaagtg cagaatatat ggtccttgac
      721 accgctggat cacacccatc aatcaattct tttacgatag caatggacga gggggctcta
      781 tcttgtttga tatgcaagta aggaacatta gatcgtaata aaaaacaagt attgtcattg
      841 ggatcatgac ccgatatagc attcattacc gtcacgacat cctcgactgt actacaaatg
      901 ggaccaattt gctccaggct attggcatag gatataagtc cgaatctgct cacgctacca
      961 taagtaggtt tgagacccac tacagaacag aagctggcag gacatcttac cgatcctccg
     1021 gtatcggagc ccaatgatac ggtgcattca cgagaagaaa ctgctgctcc gcttccgcca
     1081 gacgacccgc ccggtacaaa atctaggctc caaggattat gagtaggccc atatcggctg
     1141 tactctgttg tcgatcccat cccaaattca tccaaattta attttccgat tactatggct
     1201 ccatgattct tcaatcgctc taccactgtt gcatcatacg gcggcacata atcctcaagc
     1261 atcttagaag cgcatgtggt cttcaaccca tgtgtactta tgttatcttt aattccgaca
     1321 gttactcctg caagagatcc tgcatcttct ttggtacgaa tctttttatc aatttctcga
     1381 gcatcttcca atgcattttc cttgttgaga gttatgaatg catgtacctt accttcgact
     1441 ctctcaattc tctcaatgat ggaccagaca tattcttcag ccgtaaaatc accttgatta
     1501 atacctctat gagcttccaa cgcgccaaga tcgtacaaat tcgacatgtt atatcatctt
     1561 aggccctttt acatagcctt cctgcgccag ggaagatttt ggaatcagat cacttgtaaa
     1621 ttcaatggtc ttgtcctctc ttaaattgta gaaatcaacc tctagataat ctagggtcaa
     1681 attttctgaa tcaaatgttt cgagaacatc gatatacttt atggtatcat ccaattggtg
     1741 atgaaatgtt tcaatctctt cctcagatag atttatccgt gaaatccagc ctaaatgtct
     1801 taattcatct tttgaaacca accccgctca ccatattagc atagataaaa tcaagtcctt
     1861 ccttaacact ttagggggat agcctatcta tatcacgagg atatagaaca acatctctaa
     1921 tattctcgac ttcacagaga ctcattatta gacgttccat gccaacgcca aaacctgcat
     1981 gaggtggaac tccataatca aataccttta gatgataatc aaatgcacct atatttagcc
     2041 cttgtttctt cattctttcc accagttct
//
LOCUS       DASSIK010000177         2126 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_921435, whole genome shotgun sequence.
ACCESSION   DASSIK010000177 DASSIK010000000
VERSION     DASSIK010000177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2126)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2126)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2126
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_921435"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            68..388
                     /locus_tag="VFI64_03295"
     CDS             68..388
                     /locus_tag="VFI64_03295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242345.1"
                     /translation="MVNLKVRGSTQKISLKVIGIVILLPNSPLLQKLYNVATAILVQV
                     KISESVSSEETNNNVSATLTLAKATSVKRNNRDLTLHTANSVTSNGVCLTTLMILLYN
                     GSKK"
     gene            408..2045
                     /locus_tag="VFI64_03300"
     CDS             408..2045
                     /locus_tag="VFI64_03300"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HET7242346.1"
                     /translation="MLRNLNSKIILKISIFIIIVITLIIGSFGVLAYFQSQGSSTGNS
                     INIAGKNRYLTANLLLQTEKYLDGSSNISQLEDAMYKLQTNIMTLKQGGTISGINLRS
                     LPSDFLDLSRRIDEDWSIFKTYITNNLLKRHEDGQVTAARSNATAQSTTERKNLELLA
                     SNLIGSSDALVTKLGRQADTDSQNLMLLQILFGILIIGILVLVLYFVARILRPISALT
                     QATSEIEKGNLDVSVKRKGNDELSVLSDSFNSMVNSIKRYNERQNELTKALEFKNDEL
                     TETEKDLRRANEELVNTETAKEEFLSMISHELKTPLTPLKMYAEMLLKIRSMGELNEK
                     QLKAMKMILRSISQLELLVNDIFDVYKLDIGKLQLNKNVVQVASLVKENMSELGLLMR
                     DKQIQFNAEIIPPSEKVNVLCDPRRIGQVLANLIKNSVDFVPDKGGRITIRTEAGYSK
                     QTNDGNSNYVVFTIEDNGSGIPFEKINNLFKKFYQVDTSTKRKHGGTGLGLAICNGIV
                     EGHGGKIWVDTKHSQGAMIKFTLPIADSNAPGQNDNS"
BASE COUNT          775 a          367 c          408 g          576 t
ORIGIN      
        1 cgtcatgatt tcatattatc aaagttatta aagtaaaatg ataataagct gtgtctagga
       61 gaattacttg gtcaatttga aagtaagggg aagcacacaa aagatatcct tgaaagtcat
      121 cgggattgta atattattac cgaattcccc attacttcaa aaactataca atgtagcaac
      181 ggcgatatta gtccaagtca aaatatctga aagtgtttcg tccgaggaaa ccaacaacaa
      241 tgtatcagca accctcacgc tcgcaaaggc aacttctgtg aagaggaata acagagattt
      301 gaccttacat actgcaaatt ctgtgacctc gaacggagta tgtctgacta ccttgatgat
      361 attattatac aatggatcca aaaaataggg aatttcctga gttctgaatg ttacgaaact
      421 taaattctaa gatcatttta aagatctcta tttttattat cattgtaatc actctaatta
      481 tcgggagttt tggtgtactt gcatattttc aatctcaagg atcatcaaca gggaattcga
      541 taaatatcgc aggtaagaat cgatatctta cggccaattt attattacaa actgaaaaat
      601 atctggatgg ttcttcaaat atttcccagt tagaggatgc catgtataag ttgcaaacga
      661 acataatgac cctgaaacaa ggaggaacga tatcagggat aaatttaaga tcccttccat
      721 cagactttct ggatctctcg agacgtattg acgaagattg gagtattttc aaaacgtata
      781 ttactaataa tttactgaaa cgacacgaag atggacaagt aacagcagct agatcaaatg
      841 ccacagccca gtcaacaaca gaaagaaaaa atttagagtt attggcatct aacttgattg
      901 gctcatccga cgccttagtt accaagctcg gacgacaagc ggatacggat tcacagaatc
      961 taatgttatt gcaaatactt tttggaattc tcattatcgg gattctcgta ctcgtcttat
     1021 attttgttgc aagaattcta agaccgatat ccgctctcac acaagcgaca tcagaaatag
     1081 aaaaaggaaa ccttgacgtt tcggtaaagc ggaaaggtaa tgatgaactt tcggttctaa
     1141 gtgattcttt taactcgatg gtaaattcta ttaagagata caatgaaaga cagaatgaat
     1201 taacaaaggc acttgaattc aaaaatgatg aattaactga aacagaaaaa gacctacgaa
     1261 gggcaaatga agaattggtg aatacagaaa cagcaaaaga agagttcctg tccatgatca
     1321 gtcacgaatt aaaaacaccc cttactcctt tgaagatgta tgctgagatg ttactcaaaa
     1381 tcagatccat gggagaatta aatgaaaaac agttaaaagc tatgaaaatg atcctccgta
     1441 gtatatccca gctggaattg ttggtaaacg atatattcga cgtatacaaa cttgacatag
     1501 gaaaattgca gttgaacaaa aatgtggttc aagtagcaag ccttgtaaaa gagaatatgt
     1561 cggaattagg actactaatg cgagacaaac agattcaatt caatgcagaa ataataccgc
     1621 catctgaaaa agtcaatgtg ctttgtgatc cacgacgtat aggacaagtc ctagcaaatc
     1681 tgataaagaa ttccgttgat ttcgttcccg acaaaggggg aaggattacg atcagaacag
     1741 aagcaggcta ttcaaaacaa actaatgatg gcaattcaaa ttatgttgta tttaccatag
     1801 aagataatgg tagtggtata ccttttgaaa agattaataa tcttttcaaa aagttttatc
     1861 aagtagacac aagcacgaaa cgtaaacatg gaggcacggg actcggcttg gccatatgca
     1921 atggcattgt agaaggtcat ggtggaaaaa tttgggtaga tacaaagcat tcacaaggtg
     1981 ctatgatcaa gtttactttg ccaatcgcgg attctaatgc tccaggtcaa aatgacaatt
     2041 catgagcatc acaatcgaca atcatcataa aaattagcta agaccagtat gaggacttga
     2101 atcggacaat taacagggat catcgg
//
LOCUS       DASSIK010000178         2537 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1339214, whole genome shotgun sequence.
ACCESSION   DASSIK010000178 DASSIK010000000
VERSION     DASSIK010000178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2537)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2537)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2537
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1339214"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(197..634)
                     /locus_tag="VFI64_03305"
     CDS             complement(197..634)
                     /locus_tag="VFI64_03305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HET7242347.1"
                     /translation="MKTLSTGIKIRAKPEKVWDILTKFSDYEEWNPVMTRIIGEANLG
                     KKIEVHIRTIKGKNRIYHPTITKFDINEELRWQGRSFLPGIFEGERIFEIKEISSEEI
                     SLIHLEVFRGIGVKLFGNRLDEDLQESFEAMNIALKARAESKV"
     gene            795..1187
                     /locus_tag="VFI64_03310"
     CDS             795..1187
                     /locus_tag="VFI64_03310"
                     /inference="COORDINATES: protein motif:HMM:NF037434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242348.1"
                     /translation="MDIFCDSSFLMALVSNPITCRDRVEDELGKLKFIVPSSVLKELE
                     LIKKRAGPKRSKMAGAAIQMANSRFEITDIGEFAYDVDTMLIEYAIKSKCAVATLDNE
                     LLRRLIDNNILVITLTNNRMIVANQYRA"
     gene            1221..1877
                     /locus_tag="VFI64_03315"
     CDS             1221..1877
                     /locus_tag="VFI64_03315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HET7242349.1"
                     /translation="MVEFKGITLKWTGHAGFQITDDDKILYIDPYKLGKQFNDLNNAH
                     LVLISHNHFDHLSIDDLHKIINVNTLVIAANECLAQLKDLNVKDIRGVGPDETITFGN
                     ILIKTIPAYNTNKEFHPKKDDKVGFIITINNIVIYHTGDTDVIPEMKMINPDIALTPV
                     SGTYVMTAEEAAVAVNDLIRPTKMAIPMHYDSIVGTKDDAIRFSELVTVCSTKILEKE
                     "
     gene            2239..>2537
                     /locus_tag="VFI64_03320"
     CDS             2239..>2537
                     /locus_tag="VFI64_03320"
                     /inference="COORDINATES: protein motif:HMM:NF014565.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004576 - oligosaccharyl transferase
                     activity [Evidence IEA];
                     GO_process: GO:0006486 - protein glycosylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="STT3 domain-containing protein"
                     /protein_id="HET7242350.1"
                     /translation="MLSGTLTLFKIGDRRFQLRHLIVIGVLGIAFTTAFIMRSFPIKY
                     GFYLNEFDPYFDYRATKYIVDNGLDAYWKWHDTMSWYPEGRDIPKTSQSGLHIAAA"
BASE COUNT          824 a          455 c          454 g          804 t
ORIGIN      
        1 atgtttcacc tatatcatac gtaacttacg ataagtccat acttcgcttc tttctctatg
       61 tgaacccttt tcgcattaag agaaatttgc aattgcaatt agaatatctt agaataatgg
      121 gttattgtac ttccttttat cgcgttattt gcgccagcag tctggattca gagaacgcag
      181 atgataatag aaaccttcag actttagatt cagctcttgc ctttagagca atattcatag
      241 cctcaaaact ctcttgaaga tcctcgtcga gtctattgcc aaatagtttc accccaatac
      301 ctctgaaaac ttccaaatga ataagagaaa tttcttccga agagatctct ttgatctcaa
      361 aaattcgttc gccttcaaag atgcctggca ggaaggatct cccttgccat cttagttcct
      421 cgttaatatc aaatttagtt atggtggggt ggtatattct attttttcct ttaattgtac
      481 gtatgtgtac ttcaattttc ttacctagat ttgcctcgcc aattattcta gtcataactg
      541 gattccactc ttcataatcg ctaaattttg taaggatatc ccaaaccttt tctggtttcg
      601 ccctaatctt gatgccggta cttagtgttt tcaattattt ttgtaacttt atccttaata
      661 atgaagtttt tgagacttgc cactcgtgat aatcctttca tacgaggatc atttggcaga
      721 tttctgaact caagcgtaat atctcattta tatttctcga acctattatc ataacaaata
      781 tcaaggatga aagaatggac atattttgcg acagtagttt tctcatggct ttagtttcca
      841 atcccataac ttgccgggat agggtagaag atgaactagg caaattgaaa tttattgtcc
      901 catctagtgt cctcaaagaa ctggagttaa ttaagaaaag agcagggccc aagaggtcaa
      961 agatggcagg ggctgcaatt caaatggcta attcaaggtt tgaaattaca gacataggtg
     1021 aatttgctta tgatgtagac actatgctaa tcgaatatgc aataaaaagc aaatgcgctg
     1081 ttgcaactct agacaatgaa ttgttgagaa ggctaataga taataatatt ttagtaatca
     1141 ctctaactaa caacagaatg atagtggcaa atcaatatcg agcgtaaatt taaatcttca
     1201 tcatcatgtt atcttacttc atggtcgaat tcaaaggaat tactctaaag tggacagggc
     1261 atgcaggttt tcaaataacc gatgatgaca aaattttgta tattgatccc tacaagttag
     1321 gaaaacagtt taatgatctg aataacgctc acctagttct aatcagccat aaccactttg
     1381 atcatctttc aatagatgat ttgcataaaa ttattaacgt gaatactctc gtgattgcag
     1441 ctaatgaatg tttggctcag ctgaaggatc tgaatgtcaa ggatattcgc ggtgtaggac
     1501 ccgacgaaac aataactttt ggaaatattc taataaagac cattccagca tataatacaa
     1561 acaaagaatt tcatcccaaa aaggatgata aggtaggatt cataatcaca attaacaata
     1621 ttgttattta ccacacggga gatacagatg taattccaga gatgaaaatg ataaatcccg
     1681 atatagcact gacacctgtg tcaggaacat acgtgatgac agccgaagaa gcagcagtag
     1741 cagtaaacga tctcattagg ccaactaaga tggcaattcc aatgcattat gattcaatag
     1801 tggggacaaa agatgatgca atacgattct cggaactggt tacagtatgt tcaacaaaaa
     1861 tattagaaaa agaataaatt gacttttcaa aaattttttt aaaaattaaa acttatatac
     1921 gatttctttt ttatataaat gaaaatggcg gcaaagaaga aagcgtcaaa gtctgcaaag
     1981 aagggatcca agtctaaaaa gtaatgtgcc ttgtaatagg gcattaatta cgatctatta
     2041 ttctcccctt cttttgttcc attttttgag agcttctacc ggaatttttt gaaataaacc
     2101 tttaatcatg ttatcagtgt agtacgctta tcagaggaat tcaaacatga aaaaggctag
     2161 taatttttag tcatcaatgg ttggaggttg gtaaatgttt ggcattaagt taaaaaatag
     2221 gtaaaaagaa tgaccatcat gctaagcggt actttaaccc tgtttaaaat tggtgatcgt
     2281 cgattccaac ttcgtcacct catagttatt ggtgtattgg gaatagcctt taccacggca
     2341 ttcataatgc gctcttttcc aataaaatat ggcttctatc ttaacgaatt cgatccatat
     2401 tttgactatc gtgctacaaa gtatattgtt gataacgggc ttgatgcgta ttggaaatgg
     2461 catgacacga tgtcttggta tccggaagga cgggacattc ccaaaacctc tcagtccgga
     2521 ctgcatatag ccgctgc
//
LOCUS       DASSIK010000179         7798 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_828446, whole genome shotgun sequence.
ACCESSION   DASSIK010000179 DASSIK010000000
VERSION     DASSIK010000179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7798)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7798)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7798
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_828446"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            385..774
                     /locus_tag="VFI64_03325"
     CDS             385..774
                     /locus_tag="VFI64_03325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242351.1"
                     /translation="MKSNGLYHDLCSQVLSLDRRIRFAGILDREGKLLVCKFRENLLT
                     PLVKSSTLDHGKPKQVPTFIESFVAKKKLELVLGKLNYEFNYFERVGVGIFRLVGKQD
                     MYLCVSMESTAVYPNILSKIKNYIATI"
     gene            complement(829..1035)
                     /locus_tag="VFI64_03330"
     CDS             complement(829..1035)
                     /locus_tag="VFI64_03330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242352.1"
                     /translation="MSGEEHRDLVICGICLWSASLLRGSKGFTKCPMCGKETIEVIPV
                     NDHETYTLRMKEKGIEVEFDVERR"
     gene            complement(1170..1484)
                     /locus_tag="VFI64_03335"
     CDS             complement(1170..1484)
                     /locus_tag="VFI64_03335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242353.1"
                     /translation="MTNTPSYVRSYEGKSLLEGVMDILTLMDIGHMPKKMQCPTRSEM
                     VPLVEASTHIQRPGTKRQSKFECFCFECGRYNEERKMVVLIADWFGICKLCIRQESTL
                     YN"
     gene            1712..2605
                     /locus_tag="VFI64_03340"
     CDS             1712..2605
                     /locus_tag="VFI64_03340"
                     /inference="COORDINATES: protein motif:HMM:NF013324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HET7242354.1"
                     /translation="MGIIAVVIGIIIGSSLDNLAVSIIFTILGIISIIASFLFIIKQY
                     ERSIILRLGKYNRQVGPGMRTRFPFIEIVLVVDIREKVREFKAERMLTKDNVPVTIDA
                     ILRYKIIEDRAKDAILNVENFNEMIKQVSQTTLRNNIGSSVFQDILSKREEINQHVKS
                     IISQEAGSWGIEVTGVEVRQVVIPQELEAAMSMQAQAEREKNARITYGESEVLVAKKF
                     QEASKVYADNPVAYALRQSNMLYESIKVQGNTIVMIPSESLNSMGFGNLAMTVAYLEN
                     TKKAAKGKTEESGSSSSETTE"
     gene            2996..3643
                     /locus_tag="VFI64_03345"
     CDS             2996..3643
                     /locus_tag="VFI64_03345"
                     /inference="COORDINATES: protein motif:HMM:NF015438.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HET7242355.1"
                     /translation="MKLISLNVGLPRQVTFRGEMVTTGIFKEPIHHRTKLRKLNLDGD
                     KQADLTVHGGVDKAVYSYPEEHYRFWQKELPDMYLSCGMFGENFTTEGLFEDNVNIGD
                     QFRIGTAIVIATQPRMPCYKLGVKFGRMDIIKRFLASGLTGIYFKVLQEGEVGAGDVI
                     ELIRRDDNNVTVKDVVRIYTVDKDDVQTMERAIKVKDLPVGWRSHFIEQLDQTKK"
     gene            3688..4689
                     /gene="moaA"
                     /locus_tag="VFI64_03350"
     CDS             3688..4689
                     /gene="moaA"
                     /locus_tag="VFI64_03350"
                     /EC_number="4.1.99.22"
                     /inference="COORDINATES: protein motif:HMM:TIGR02666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HET7242356.1"
                     /translation="MASKLVDKYGRIAKKLRISVTDRCNMRCIYCMPTNNADWLDDSQ
                     VLSFNEIVRLASIFADLGIEKIRITGGEPLVRPSLENLINSISMIPGIKGIGLTTNGL
                     LLADQVKQLSSAGLSSVNVSLDSFKEDRFKMMTGVKGVNKVISSIHNANDAGLDVKLN
                     TVVIRGWNDDEIVDFALFARDNGFTVRFIEFMPLDGTGIWKHDLVFSKKEMIERINLN
                     LGEIVKHHNSDNQPEPAMLYSFVDGKGIMGFIPSITEPFCGNCDRARITSDGRLLTCL
                     FENPGHDLKGFLRSGATDEVIERYIIDSMSNKPEGIIKMIKTKSLKPSLNLMHTIGG"
     gene            4697..4972
                     /locus_tag="VFI64_03355"
     CDS             4697..4972
                     /locus_tag="VFI64_03355"
                     /inference="COORDINATES: protein motif:HMM:NF014636.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HET7242357.1"
                     /translation="MTTTSDDKENDLIKVKLFGISTEIVGKSEMTLLVPDGTTVGILK
                     KKITKMYPSLDVVNVPFVFAVNHRVASEDVPVTHLDEIAILPPVSGG"
     gene            4973..5395
                     /locus_tag="VFI64_03360"
     CDS             4973..5395
                     /locus_tag="VFI64_03360"
                     /inference="COORDINATES: protein motif:HMM:NF014448.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HET7242358.1"
                     /translation="MLILITDNAIDLSKILIDVSDNSAGAITLFVGTVRDRDSDGHVS
                     ALYYEAYKKMAEDMMTEIEKEVLRKWNIIKFSATHRIGTLKVSEISVAVAVSSEHRNE
                     AFEACKYGIDNIKTRVPIWKKVYSEAGDKWVTGVSLHE"
     gene            5388..6323
                     /gene="moaCB"
                     /locus_tag="VFI64_03365"
     CDS             5388..6323
                     /gene="moaCB"
                     /locus_tag="VFI64_03365"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: protein motif:HMM:NF002947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional molybdenum cofactor biosynthesis
                     protein MoaC/MoaB"
                     /protein_id="HET7242359.1"
                     /translation="MSENKVNKGMFNVSNKPDTYREAIALAVLKVNPSTISLIKKGKS
                     PKGDIIEAAKISATMAAKRTWDLIPYCHPIPIDQVLVEVLLRQDSIEITVEVKSVWKT
                     GVEMESLTGACIGALTVYDMLKPVDDTLSLGSVRLLSKSGGIKDFHEHGNKEIKAAVL
                     VISDSVASGKRIDKSGKTIVDKLLKDGVEVIEYKILPDDVHLIEHNLKEFCDDSRVDL
                     ILTSGGTGLGPRDVTPEATHNVLEKEVVGISETTRAYGQRRLPLSMLSRGLSGVRGKT
                     LIINLPGSVRAVSESMDSLFPGVLHAFRMLEGHGH"
     gene            complement(6541..>7798)
                     /locus_tag="VFI64_03370"
     CDS             complement(6541..>7798)
                     /locus_tag="VFI64_03370"
                     /inference="COORDINATES: protein motif:HMM:NF015418.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HET7242360.1"
                     /translation="IRSGYNKLRENIKIQPQIEYVDTLESYGRVLYKDVISSVDIPPR
                     TSSHMDGMAVIAADIKYASPSTPITLNIVRNVGLGNVTIHPLHSGQASRIPTGGHLPP
                     RADTVVPVEQTQILSKNKVVILSSLSKGSFISASGMDVKKGTKLFHRGAILRAQDVAL
                     LSMVGITRVLVFKRPKVAIIPTGDELTDNPREINQGKIFNTNSHIISRLIQEGGGIPL
                     DLGTTADKAEEIQKKMKLALTKTDIILTIGGSSMGEHDVVEESINSMGSPGILVHGVK
                     LDRGRVAGVGVIKGKAIIILPGPIQGSVGAFVVFVQPLLRFLSGLPEFSRMGKNCTLA
                     KRWEARKKFRDFVKVVFVQIKLTKYGKFKAIPVIGETAAMSVLTKTNGYILVPEKTAA
                     IEAGEQIHVNLLPGLSYTAGYPVDFL"
BASE COUNT         2515 a         1386 c         1599 g         2298 t
ORIGIN      
        1 agtatgatgt ttttgtttgc ggacatacgc acagaacatt aagtacaact tttggaaaaa
       61 ccattgttat caatccaggc acagcaaacg gttcgtttct tggctataag gctaccgcag
      121 ccatatttga taccactgat agtcatatcg agtttatcaa tttataatct aaaccttaag
      181 aggactttat cctaaagtca aagatatgac cactaaacca acaatctccc caagacgcaa
      241 gtatggcccg atttcagagg aaggtgtaaa tcttaacgaa tatgatctca atttatttga
      301 atgagaagat tttaacttct agacatttgg tgacgaggta acgcataata taagaatggt
      361 aagatatgta gagtagagag tgatttgaag agcaatggat tatatcatga tctatgttct
      421 caagttcttt cactagacag gcggattaga tttgccggaa tactagacag ggaaggcaaa
      481 ctcttggttt gcaaatttag agaaaatttg ttaacacctt tggttaagtc aagcaccctg
      541 gaccatggta aacccaaaca ggttccaacg tttatcgaat cattcgtagc aaaaaagaaa
      601 ttagaattgg tactgggtaa acttaattac gagttcaatt actttgagag agttggggtc
      661 ggaatattta gacttgttgg aaaacaagat atgtatctat gtgtttcaat ggaatcaaca
      721 gcagtttacc caaatattct ttcaaagatc aagaattaca tagcaacaat ataattaata
      781 tacaaaccaa gtgctaacag acattcgtta tgaatgcgag gaaatgactt acctcctttc
      841 aacatcaaat tctacttcta ttcctttttc cttcatacgc aaagtgtacg tttcatgatc
      901 attgactggt ataacttcaa ttgtctcctt tccacacata ggacatttcg taaatccctt
      961 tgaccctctc aaaagcgagg cagaccaaag acagataccg catatcacaa ggtctctgtg
     1021 ttcctctcca gacatcgcca attttcacta cagaaattag ctattacagt gttttcattc
     1081 tttgagcagg ttgtaagcaa cgaaccaatt cgaacattaa ctaatttatt ctgtctgggc
     1141 ctttatatgg aaaacaagta agaaaataat taattgtaaa gtgtagattc ttgtctaata
     1201 cataacttgc atattccgaa ccaatctgca attaagacca ccatttttct ttcttcattg
     1261 taccttccac attcaaagca aaagcactcg aatttacttt gccttttggt ccctggtctt
     1321 tgaatatgtg tagaggcttc aacgagaggc accatctcag atcgagtggg acattgcatt
     1381 ttttttggca tatgccctat gtccattaat gtcagaatat ccatgacacc ttctaacaaa
     1441 gactttccct cataacttct aacataacta ggggtattag tcatattatg gatctactac
     1501 tatcatatta tgacatcatc gtattaacga atgatgtcca tattaccaac tttgccggac
     1561 aaataacctg aaaatgtctt taagatcaac aaataaacca atatacaaga agattacaac
     1621 acaatatcgg tgaaaagcgg cgagtacaca atcaaccttt agctcatttg acaggatagt
     1681 taaccaaaga ggttctggcg gattgtttgt gttgggaata atagctgtgg ttattggaat
     1741 cataataggt tcttcactag ataatctggc agtctcgata atcttcacaa tcttggggat
     1801 aatttctata atagcctctt ttctattcat aataaaacaa tatgaaagat caatcattct
     1861 tagacttgga aaatataata gacaggttgg tcctggaatg cgtaccagat tcccttttat
     1921 tgaaattgtt ttggttgttg atattagaga aaaagtaagg gagtttaaag cagaaagaat
     1981 gctcacaaaa gataacgtac ccgtaacgat agatgcgatt ttgaggtaca aaataattga
     2041 agatagagca aaagatgcta tactaaatgt cgagaacttt aacgaaatga taaagcaggt
     2101 ttcccaaaca actctgcgta ataatatagg ctcttctgta tttcaagaca tactttcgaa
     2161 aagagaagaa ataaatcaac atgtaaagtc aataatttca caggaagctg gcagctgggg
     2221 tattgaggta acaggagttg aagttcgtca agttgtcatt ccccaggagt tggaggcagc
     2281 aatgtcgatg caggcccaag cagagcgtga aaagaatgca agaataactt atggtgaatc
     2341 tgaagtcctt gtagcaaaaa aattccaaga ggcatcaaaa gtatatgctg ataatccagt
     2401 ggcatatgcg ttaagacaat ccaatatgct ttacgaatca attaaagttc aaggaaatac
     2461 tatagttatg attccctctg aaagtctaaa ttcaatgggt tttggaaacc ttgcaatgac
     2521 tgttgcatat ctggagaaca caaagaaggc agcaaaagga aaaacagagg aaagcggctc
     2581 ttcctcatcg gaaacgacag aatgaatttc tgccaagcca cgaatgggtt tagcatggga
     2641 agaatacggc agtcagattc tatgcagaat gccaatgtct ctcatgagat gatagtcctg
     2701 actttttgca gtgccctttg gagggattca ttttccacga ttcttccata ggtgaattca
     2761 gtccaagttc taggcctaaa tacctgctat gttgttctct taatattcat ccgaaattat
     2821 ggttggcaat aatgaaaaga tcataaattt tacttgcaat ttctttttct atattatttt
     2881 ccaatgcttc ccattcaact ctaattcccc agcctattgt atgctatgct taaatatttg
     2941 gtagcaaact tgtcatacaa tgtttattta aggcgaagag tattctattg tgctgatgaa
     3001 actgatatct ctcaatgtgg gacttccacg tcaggtcacc ttcagaggtg aaatggttac
     3061 cacaggaata ttcaaggaac caatacatca tcggacaaaa ctaaggaaat tgaatcttga
     3121 tggagataag caggctgact taacagtaca tggcggcgtg gacaaagccg tatattccta
     3181 tccagaagaa cattataggt tctggcaaaa ggaactgcct gatatgtatt tgtcttgcgg
     3241 tatgtttgga gaaaatttta ctactgaagg actatttgaa gataatgtta acatcggtga
     3301 tcagttccgg attggaacag caatagttat agcaactcaa ccgaggatgc cgtgctataa
     3361 acttggagta aaatttggca gaatggacat aattaaaagg tttttggcca gcggtcttac
     3421 agggatttat ttcaaggtgt tacaagaagg tgaagtaggt gcaggggatg tgatcgaact
     3481 tattagaaga gatgacaaca atgtgactgt gaaggatgtt gtacgcatat atacggtcga
     3541 taaagatgac gtgcagacca tggagcgcgc aataaaggtt aaggatttac cagttggatg
     3601 gagatctcat ttcatagagc aattggatca aactaaaaag tgatagtgtg agtggcgaag
     3661 ttgacctgtt aaagggagac aagttacgtg gctagcaagc tcgtcgataa atatggtaga
     3721 attgccaaaa agttaaggat ctcggtgaca gatagatgta atatgagatg tatctattgc
     3781 atgccaacga acaatgcgga ttggctagac gatagtcaag ttctctcttt taacgaaata
     3841 gttaggctcg catcaatttt tgccgattta ggaattgaaa aaatacgaat aactggaggt
     3901 gagcctctag taagaccatc attagaaaat ttgattaatt ctatttcaat gatccccgga
     3961 atcaaaggta taggccttac caccaatggg ctactacttg ccgaccaagt aaagcagttg
     4021 tcatctgcgg gactttcaag cgtgaatgtc agtctagatt cattcaagga agatagattc
     4081 aaaatgatga ccggagtgaa aggagtaaat aaagtcatta gttctataca taatgctaat
     4141 gatgcaggac tggacgtaaa gctaaacacc gtcgtcatta ggggatggaa tgatgatgaa
     4201 atcgttgatt ttgccttgtt cgcaagagat aatggcttta cagtacggtt tatagaattt
     4261 atgcctcttg atggtacagg gatttggaaa cacgatctcg tttttagtaa gaaagagatg
     4321 atcgaaagaa ttaacttgaa tttgggagaa attgtcaagc atcataatag cgataatcaa
     4381 ccagagccag cgatgcttta ttcctttgta gacggcaaag gtatcatggg gtttatccct
     4441 tcaattacag aaccattttg cggtaattgt gatcgagcaa gaataacctc agatggtaga
     4501 cttctcactt gtctttttga aaatccaggc cacgatttga aagggttttt gcgtagtgga
     4561 gcaacagatg aagttattga acgctacatt atagatagta tgagtaacaa acctgaaggt
     4621 ataattaaga tgataaaaac taaaagtcta aaaccttcac taaatttgat gcacacaata
     4681 gggggatagc ataagcatga caactacttc cgatgataaa gaaaatgatt tgataaaagt
     4741 aaaattattt ggcatctcaa cagaaattgt tggtaaaagc gagatgactc tactggtgcc
     4801 tgatggaacc acggtaggaa ttctaaagaa gaaaataact aaaatgtatc cttcacttga
     4861 tgtggttaat gtcccatttg tatttgctgt caatcatagg gttgcaagtg aagatgttcc
     4921 agtaacacat cttgatgaaa ttgcgatatt acctcctgtc agtggtggct aaatgttgat
     4981 tctaataaca gataacgcta ttgacctgag caaaattttg attgatgtca gcgataattc
     5041 tgctggagca attacactat ttgtgggaac tgtaagggac cgtgattcag acggtcatgt
     5101 ttcagcacta tactatgaag cttacaaaaa aatggctgaa gatatgatga cagaaatcga
     5161 aaaagaagtc ttacgtaaat ggaatataat aaaattttct gcgacacatc ggattggaac
     5221 cttgaaagta agtgaaataa gcgttgcagt tgctgtgtcc tcagaacatc ggaatgaggc
     5281 atttgaggca tgcaaatatg gaattgataa tattaaaact cgtgtgccta tctggaagaa
     5341 agtgtactca gaggcaggtg ataaatgggt aactggagtg tctcttcatg agtgaaaata
     5401 aggttaacaa aggtatgttc aatgttagca ataagcccga tacttacagg gaagcaatag
     5461 cactggcggt cttgaaagtc aacccctcaa ccatatcact aattaagaaa ggaaaatcgc
     5521 ctaaaggcga tattatagaa gctgcaaaaa tttcagctac gatggcggct aagagaacat
     5581 gggacttgat tccatattgt catcctatac caatagacca agtcttagtg gaagttttac
     5641 taagacaaga ttctatagaa attactgttg aagtaaaaag tgtatggaag acaggagtag
     5701 agatggaatc gctaactggg gcttgcatag gagcattaac tgtttatgat atgctaaaac
     5761 cagttgacga cactctttca ttaggatccg taaggctttt gagcaagagc ggcggcatca
     5821 aggactttca cgaacatggc aataaagaga taaaggctgc agtacttgtt attagcgact
     5881 ccgttgcaag tggaaaaaga atcgacaaat cgggaaaaac tattgtagat aaattactaa
     5941 aggatggtgt tgaagtcatt gaatataaaa tattgcctga tgatgtccat cttatcgaac
     6001 acaatctaaa ggaattttgt gatgattcga gagttgatct catactaacg agcggcggca
     6061 ctggtcttgg tcctcgtgat gttactccag aagcgaccca taatgttcta gaaaaagaag
     6121 ttgttggaat ttctgaaacc actagagctt atggtcaaag aaggttacca ctgtccatgc
     6181 tttcgagagg attatcggga gtgaggggga aaacattaat cataaatctt ccagggagtg
     6241 taagggctgt ctccgagtct atggattcgc tatttccagg cgtattacat gcatttagaa
     6301 tgttggaggg acatggacac tagtgacatt cagtaacatt ggttatcagc tctatcagtg
     6361 ctgtttaaaa taggttaccg atgttttagt gtcgatttgc catgaaccac aatgccctat
     6421 cattcccatt attttatttt attttaatcg tctaagtaga tttattccta agggcttact
     6481 agttgaggta gtctggatta attttgtaat gaatatgttt atttgaatac cattcattca
     6541 ttatagaaag tctacaggat aaccggcagt gtatgacaga ccaggaagca gattgacgtg
     6601 tatttgttct cctgcctcta ttgcggcagt cttctcaggt accagaatgt atccatttgt
     6661 tttagtcaat acactcatgg cagcagtttc accaattacg ggaatggcct taaatttacc
     6721 atatttagtt aactttattt gaacaaacac cactttgaca aagtcgcgga atttcttgcg
     6781 tgcctcccaa cgttttgcca aggtgcagtt ttttcccatg cgactaaatt ctggcaggcc
     6841 cgacagaaat ctaagtaatg gttgaacaaa cacaacaaaa gcaccaactg atccctgtat
     6901 aggaccaggt aaaattatta ttgctttacc ttttatcact cccacaccag caactcgtcc
     6961 acgatccagc tttaccccgt ggaccaagat accagggcta cccatcgaat ttatcgattc
     7021 ttctacaaca tcatgttctc ccattgaaga accacctatt gtgaggataa tatccgtttt
     7081 tgtcaatgct aacttcatct tcttttggat ctcttcagct ttatctgctg tcgtgcccaa
     7141 atccaaaggt attccaccgc cttcctgaat caatctagaa atgatgtgac tattggtgtt
     7201 gaaaatcttt ccttgattta tttcacgagg attatcggtt agctcgtccc ctgttggaat
     7261 tattgcaact ttaggccttt tgaatactaa cactctcgtg attccaacca tggataatag
     7321 tgctacatct tgtgctctta gtatggctcc cctgtgaaat agttttgttc ccttcttgac
     7381 atccataccg gaagcagaga taaaagatcc cttcgaaaga gaggataaaa ttaccacctt
     7441 atttttagat aaaatttgag tttgttcgac aggtacaaca gtgtcggctc taggaggcag
     7501 atgccctcct gtgggtattc tggatgcttg tcctgaatgc aacggatgaa tggtaacatt
     7561 tcccaatcca acgtttctga cgatgttgag agttattggg gtagaagggg aggcatattt
     7621 aatatcagca gcgataaccg ccattccatc catgtgagag gaggtccttg gaggaatatc
     7681 aacagaagat atgacatctt tatacaaaac cctcccgtaa gattccagag tatcaacgta
     7741 ctcgatttgt ggttgaattt ttatattttc tcttagctta ttgtatccac ttctaata
//
LOCUS       DASSIK010000180         4093 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_232257, whole genome shotgun sequence.
ACCESSION   DASSIK010000180 DASSIK010000000
VERSION     DASSIK010000180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4093)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4093)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4093
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232257"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2341)
                     /locus_tag="VFI64_03375"
     CDS             complement(<1..2341)
                     /locus_tag="VFI64_03375"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HET7242361.1"
                     /translation="MLVLISSLGLSIYSNPSNVFSQSQSGSSNSTDNTPPLLSVPADS
                     VVEATNSSGRVIIYKVIGSDLVDGTINVLCGPLSGSMFPIGKTKVSCKGADRAGNVGT
                     ASFSIKVQDTTPPDTKIDFARAGILGDILPNTNTSSSDISFKLSGSDNVGISHFECKL
                     DEAKWISIVYDENTMNDYGCTYTNIPSGVHTVLARSVDRAGNIDPMPAGFRWTVLSAY
                     ESINNIMTEVKEIHLAPNLKDSMVVSLQKMSDGLAAEDLAKDAKICTDIGAFLLAIKK
                     TALDVDFDEKFHLMDLILTLNSRIGCPPPIANAGKDLSVDEGEKVHLDGSQSSGIYGE
                     TISYTWKQSSGPSAKLANSHSARPEFIAPQVDRNTNLKFELSVSDSHGLSSTDSVTVT
                     VNDIIKPSNGESSDGGGGYQGEPSDTKGLNIAAVGDWGCNSNTQSTGNNIDSKNPEVV
                     LALGDYSYSSTATCWFNIIDPIGSITRITIGNHEDQPSEDNSAYLNHFGLSQQYYSFD
                     YQDVHVITMNSEQNYDLGSSQYNFVKKDLESASSNPNIHWIIVTFHQPAYSSPNSCSS
                     CKAATSIRDTYHPMFDQYGVDLVLEGHVHNYQRSYPLTFNKNDPSKPLVTNTDKNRYV
                     DPKGPIFIIVGTGGINFHSLAGKESYIVNQQDAKFGFLNIHFSDDGKLLGGTFYANDG
                     SILDQFSVTKSSSAIGTDKIPKANSEAISVEKDKLTIFSLNATDPKGGPLKYSILSQP
                     SHGTLSGKTPSVTYKPSKDYVGQDSFTFKATDDKGTDSNI"
     gene            2760..4091
                     /gene="aspS"
                     /locus_tag="VFI64_03380"
     CDS             2760..4091
                     /gene="aspS"
                     /locus_tag="VFI64_03380"
                     /EC_number="6.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004815 - aspartate-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006422 - aspartyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA(Asn) ligase"
                     /protein_id="HET7242362.1"
                     /translation="MADLLEEDLGTWRRTHYSVDINPNLNESEIIIMGWVSSIRDHGN
                     IKFLTINDRFGHIQIALKKKDCSKAVLEKTEQIREHTSIAIKGKVKSEIKAPNGAEIL
                     PVEIKILSLARKASPFLIQSKKSVGIDTRLDLRALDLRRPFLQSLFNIRNTIMDSCRE
                     FLIKDGFMEVNTPKIIATATEGGAALFPIFYYEREAFLAQSPQLYKEQLTMAFENVFE
                     IGPIFRAEPSRTNRHLSEATSIDVEKAFADYNDVMNLLERMLSYVVGKIQENNKPHLE
                     YLNITLPDIALPFRRYRYSELIEMLQNAGESIKWGDDLAFQKLQKIQDAKVDTFYFIL
                     DWPAAIKPFYVKPRSTVANECESFDLMYKSLEISSGSTRVSRKEELVERMKKQGLNIG
                     AFDYHLKVFDYGVPPHAGFGVGMERLIMSLCGVENIRDVVLYPRDIDRLSP"
BASE COUNT         1250 a          789 c          796 g         1258 t
ORIGIN      
        1 caatattgct atcagttccc ttgtcatcgg ttgctttgaa agtaaagctg tcctgtccta
       61 cgtagtcttt gcttggctta taggttacac tgggagtctt tccagaaagt gtcccgtgtg
      121 atggttgtga gagtatagaa tacttgagag gtccaccttt gggatcggtc gcatttaaac
      181 tgaagattgt caatttatcc ttttccaccg agatagcttc gctgtttgct ttgggaatct
      241 tatctgttcc aatagcggat gatgattttg ttaccgagaa ttggtcaaga atagatccat
      301 cgtttgcata gaatgttccg cccaaaagtt ttccatcatc gctaaaatga atattcaaga
      361 atccaaattt agcatcctgc tgattgacaa tatatgattc ctttccagca agagaatgaa
      421 aatttatacc tcctgttccc acgattataa atattggacc tttcgggtct acatatctat
      481 tcttgtcagt gttcgtaact aatggctttg acggatcatt tttgttaaat gtcaagggat
      541 aggaacgttg ataattatga acatgtccct ctaacactag gtctacccca tactgatcaa
      601 acatgggatg atatgtatcc cttatagatg tggctgcctt gcaagatgaa caggaatttg
      661 gagaactgta cgctggctga tgaaaagtga caattatcca atgaatattt ggattacttg
      721 aagctgattc taggtctttc tttacaaagt tatattgtga agatccgaga tcataatttt
      781 gttccgaatt catggttatg acatgaacgt cctgataatc aaatgaatag tactgctgtg
      841 aaagaccgaa atgatttaag tacgcactat tgtcttccga aggctggtct tcatgatttc
      901 caatcgttat tctagtaata ctgcctatag gatctataat gttaaaccag catgttgcag
      961 tactcgaata cgaatagtca ccaagggcta ataccacttc tggattcttg ctatctatgt
     1021 tgttccctgt agattgggta tttgaattac atccccaatc cccaactgca gcaatattga
     1081 gaccctttgt atcgcttggt tccccttgat atccacctcc gccgtctgaa gattctccat
     1141 tacttggttt aattatgtca tttactgtga cagtgaccga atcagtcgat gagagaccat
     1201 gagagtcact aacactcaat tcaaatttca aattagtatt tctatctact tgtggtgcaa
     1261 tgaattcagg tcttgctgaa tgagaattag ctagttttgc tgatggccca ctagattgtt
     1321 tccatgtgta agatattgtc tctccataga taccactgct ctggctaccg tcaagatgga
     1381 ccttctctcc ttcatcgacg ctcaaatcct ttcctgcatt tgctataggg ggagggcacc
     1441 cgattcttga atttaatgtc aagattaaat ccatcagatg gaatttctca tcaaaatcaa
     1501 cgtccaatgc agttttctta attgcaagta aaaaagcacc gatgtcggta cagatctttg
     1561 catctttagc aagatcttcg gcagccaatc catcagacat tttttgaagc gaaacgacca
     1621 tgctatcttt gagattcgga gccaaatgaa tttctttgac ctctgtcata atgttgttaa
     1681 tgctctcata tgcactaaga actgtccatc tgaaacccgc aggcatcgga tctatatttc
     1741 cagctctgtc cacacttctt gctagtacgg tatgaacacc agaaggaatg tttgtgtagg
     1801 tacatccata atcattcatt gtattttcat cgtaaacaat ggaaatccat ttagcctcgt
     1861 ctagcttaca ttcaaaatga cttatgccga cgttatcgga ccctgataac ttgaagctaa
     1921 tatcgctgga tgaggtattt gtgttgggta atatatcgcc caggatgcca gcacgtgcaa
     1981 aatcgatttt agtatcaggc ggtgttgtgt cctgaacttt aatactgaat gatgcagttc
     2041 ctacattacc ggctctgtca gcacccttgc aagaaacttt ggtctttcca atgggaaaca
     2101 tcgatcctga aagtgggccg caaagaacat ttattgtccc atcaacaaga tcagatccga
     2161 ttactttgta tatgattact cttcctgacg agttggtggc ctctacaaca gaatccgcgg
     2221 gaacactcaa taaggggggt gtattgtctg ttgaatttga agaaccactc tgagactgtg
     2281 aaaatacatt tgaagggttg ctatatattg ataaacccaa agagctgatt aatactaaca
     2341 ttgtaaacga tgaggtaaat cacgacaata gaaagagctt aaaaatattg tatataagaa
     2401 cttaggcatc gcatatcata ttcaatttaa tcacgaagat ctagggataa atttcaattc
     2461 taattataat agcttatcat ccctataatt ctactagtta catctcacag taaatgctat
     2521 ctaacttacg attccgatat agaaggctgc gctttttatt cctgctccaa aaattactgc
     2581 ataaacggag tttttgttat agaactgcgg ccctcttccc tctcatcttg tggatgcatg
     2641 aaatcacatc aagtccaaat gaggataaaa aaacaagatc cgattaatag ttgaatcttc
     2701 ttatcttaaa ggttaaatta acctgttcag tacagtccaa actattaagg tctgcacatt
     2761 tggctgattt gttagaagaa gacttaggca cgtggaggag aacacactat tcagttgaca
     2821 tcaatcccaa tttgaatgaa agtgaaatca tcataatggg atgggtgtcg tctattcgag
     2881 atcatggtaa cataaaattt ctcacaatta atgataggtt tggtcacatt caaatagcat
     2941 taaagaaaaa ggattgttcc aaagctgtat tggaaaaaac tgagcaaata agagagcata
     3001 cttctatagc aattaaaggc aaagttaaat cagaaattaa agctcctaac ggggctgaaa
     3061 tattgcctgt tgaaattaaa atactctcgc ttgctagaaa agcttctcca tttctgattc
     3121 aaagtaagaa gtccgtgggc atcgatacaa gattagacct tcgagctcta gatctgcgac
     3181 ggccgtttct tcaatctcta tttaacataa gaaataccat tatggattca tgcagagagt
     3241 tcctaattaa agacgggttc atggaagtta ataccccgaa aataattgct acagctacag
     3301 aaggaggggc agcactgttt ccgatattct attatgagag agaggcattc ttggctcaga
     3361 gcccgcaact ttacaaagag cagcttacaa tggcctttga gaatgtattt gaaattggtc
     3421 caatattcag agcagaaccc tctcggacga acagacacct ttcagaggcc acttccatag
     3481 atgttgaaaa agcttttgca gattacaatg atgtgatgaa cttgttagaa cgaatgctgt
     3541 catatgttgt cggcaaaata caagagaaca acaaaccaca tctcgaatat ctgaatatta
     3601 ctctgcctga tatagccttg cccttcagaa gatatcgata ttctgaattg atagaaatgc
     3661 ttcaaaatgc aggcgaatct ataaaatggg gagatgatct tgcttttcaa aaattgcaga
     3721 aaattcaaga tgcaaaagtg gacaccttct acttcattct tgattggcct gctgcaatca
     3781 agccatttta tgtaaagccg agatcaacag tagcaaacga atgtgaatct tttgatctga
     3841 tgtacaaatc acttgaaata tcttcaggaa gtacaagagt tagtcgaaaa gaagaactgg
     3901 tggaaagaat gaagaaacaa gggctaaata taggtgcatt tgattatcat ctaaaggtat
     3961 ttgattatgg agttccacct catgcaggtt ttggcgttgg catggaacgt ctaataatga
     4021 gtctctgtgg agtcgagaat attagagatg ttgttctata tcctcgtgat atagataggc
     4081 tatcccccta aag
//
LOCUS       DASSIK010000181         2100 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1419262, whole genome shotgun sequence.
ACCESSION   DASSIK010000181 DASSIK010000000
VERSION     DASSIK010000181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2100)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2100)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2100
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1419262"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(382..1371)
                     /locus_tag="VFI64_03385"
     CDS             complement(382..1371)
                     /locus_tag="VFI64_03385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242363.1"
                     /translation="MKNKLSILQALVLYIFVISSVSFSVFVLSSDMIFARNHELPPPI
                     LNKTSLDVFNSLGANLGNKPLTADNGLPPAVVTPSEVQITNHGERQITFAESIPFNTT
                     AAEIFDKYMIPTYPTPREDIAKGSLFSPPTFIVRQSIDNDTDGGNPAFFTLTPILERI
                     FPDMTLLVNEFSTQKNAKTNVEQIKVTFAKEGRTVGFSFGISREIPEGLKIRSPSKFN
                     TTLFLNIDYIGEGSTQSGAKGLNFSDPTYFTSSPEVSLIVSKSLNAEKLNDGCPKMAA
                     GLFDDDTGRWRPANLTRSEKLGSEDVCSYKLLTEHFSKFAVGGVVPPGQLGLS"
     gene            complement(1840..>2100)
                     /locus_tag="VFI64_03390"
     CDS             complement(1840..>2100)
                     /locus_tag="VFI64_03390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242364.1"
                     /translation="KAYVLNRRIHHGEIGILLELSNLLKKSRPATAGILSGIGEALSN
                     DDIADKGEWFKFKKKENKTNLKTSTTETSRTEIGRSKTEKEN"
BASE COUNT          612 a          412 c          403 g          673 t
ORIGIN      
        1 acactcagat accagtttat tgagagtctc gacctttgtc atttggttcc tagtaggtat
       61 cctcggatct gagagaccaa cgatgtcgac gaagaaaaaa tgtgcatgaa taagccccaa
      121 gttggtcctc atcttcccag ctggtatgtt gatgagttgc ctacaatata ttagatatta
      181 tttacactac atctaggagt ttctatcctg aggtctcaat attacattta aaacagtaag
      241 tttttgcttg caaaaaggtg atggcgtaga tgtgtagatc cagtgtgtat atcaccacta
      301 ggtataatgt acgctacaac cttattcgca agacatgaaa ggactaccaa taaaatctta
      361 gaatatgaga aaccatattg cttaagaaag ccccagctgt ccaggtggta ctactccacc
      421 aacagcaaac ttcgagaaat gctctgtaag gagtttgtag ctacatacat cttcagaacc
      481 caacttttcg ctcctcgtga ggtttgctgg cctccatcta ccagtatcat cgtcgaacag
      541 tcccgccgcc atcttcgggc atccatcatt aagcttttct gcattcaagg atttggaaac
      601 aataaggcta acttctggag acgaagtgaa ataggttgga tccgaaaaat tcaacccttt
      661 agcaccggac tgagtacttc cttctcctat gtaatcgata tttagaaaca aggttgtgtt
      721 aaacttcgac ggtgagcgta tttttaaccc ttcgggaatt tctctagata tcccaaaact
      781 gaagccaact gttctacctt ccttggcaaa cgtcactttg atttgttcca catttgtttt
      841 tgcatttttc tgagtcgaga attcattaac taatagggtc atatctggga agattcgctc
      901 taggatagga gttaaagtaa aaaaagcggg gtttccccca tccgtatcat tatcaatgct
      961 ttgtctaact atgaatgtag gaggactaaa caaacttcct tttgcaatat cttctcttgg
     1021 agttggatag gtcgggatca tgtatttatc aaaaatttca gcggctgtag tattgaatgg
     1081 aattgactcg gcgaaagtta tctgcctttc gccatggttc gttatctgaa cttcagatgg
     1141 cgtgacgaca gcaggcggta agccattatc cgcagttaaa ggtttgtttc ctaagttagc
     1201 gcctagtgag ttgaagacgt cgagtgacgt tttattgagt attggcgggg gtaattcatg
     1261 atttctggcg aatatcatgt ctgagcttag cacaaaaaca gaaaacgaga cagaagaaat
     1321 gacaaaaatg tataaaacaa gcgcctgcag aatagataat ttattcttca ctttatatcg
     1381 tatttgatat ctgatttcct agactttaaa ttttaataca tgtcgagtct tcgacttggt
     1441 ttaagagtga tacatttatt gaaaatttaa gtgttattgg atttaataca agctgcatgg
     1501 catcctaccg aatacaccct aaaccggtcc taaatgtggt acttagtacg gtaaagaaag
     1561 acaaagcaat ggaagaaaat ccgattgcct cgtaagtctt gtaggtggag ccaacaattg
     1621 taaaatttac atattttagt ctgtgaacaa tacagattac attccaatca cccagcggcc
     1681 ttaggctttt tcacaacggt cgaagggaat ctgcataatg aggatacaca aactattatt
     1741 ttaaattatt tcaaactcag gcaaatattg aatgctttgg aacatgaatt cattcttacc
     1801 tattcttaac aattcttaaa tgaaacccta taattttatc taattctcct tttcagtttt
     1861 gcttcttcca atttccgttc tagatgtttc tgtcgtggat gttttcaagt tcgttttatt
     1921 ctcctttttc ttaaacttga accattcacc tttatccgcg atgtcgtcgt ttgatagggc
     1981 ttctccaatt ccagataaga tcccggcagt ggcaggcctg gattttttca aaagatttga
     2041 tagctctaat aagattccga tttcgccatg atggattctt ctatttagaa cataggcttt
//
LOCUS       DASSIK010000182         2500 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_724094, whole genome shotgun sequence.
ACCESSION   DASSIK010000182 DASSIK010000000
VERSION     DASSIK010000182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2500
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_724094"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(239..1252)
                     /locus_tag="VFI64_03395"
     CDS             complement(239..1252)
                     /locus_tag="VFI64_03395"
                     /inference="COORDINATES: protein motif:HMM:NF014757.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase NAD-binding
                     domain-containing protein"
                     /protein_id="HET7242365.1"
                     /translation="MKSHGANKERGWIISFNKPIHRIAIVGTGLIGSSWTALYLASGF
                     TVVATAPGPNAESKLRENVDSAWESLTLLGLSNNASPKRLTFTSNMKQALSEADFVQE
                     NGPENPDLKIKLFAEMDDATPSDSIIASSSSGITMSVIQSGCRHPERCVIGHPFNPPH
                     LIPLVEVVGGNKTSPEAIQQAIAFYASIGKKPIYLRKEFPGHAANRIQAALYREVLYL
                     IKQGVLSVEDADSAVSWGPGLRWGVMGPNLLWHVGGGEGGIQQFMEKFMDPLATLMKN
                     LGNPDVTPDLKQTIIRGVMHEAGNRSVKQLAKEENEMLLGLINRRTKGASESISAKKD
                     DQM"
     gene            complement(1288..1428)
                     /locus_tag="VFI64_03400"
     CDS             complement(1288..1428)
                     /locus_tag="VFI64_03400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242366.1"
                     /translation="MISKGNRMFITDLGGSIYSAKLDGSDKKMLLAAQGNLSGIAYYE
                     CS"
     gene            1953..2276
                     /locus_tag="VFI64_03405"
     CDS             1953..2276
                     /locus_tag="VFI64_03405"
                     /inference="COORDINATES: protein motif:HMM:NF025178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme iron oxygenase ferredoxin subunit"
                     /protein_id="HET7242367.1"
                     /translation="MNQDFVRVASTKDIPPSQMKAVDLDGSQNICMANIDGKYYAIDN
                     ICTHEGGPLADGTLEGYEVECPWHGSKFDMRTGVVTNPPATEPEATYEVKVDGDNILI
                     RKQKG"
BASE COUNT          726 a          513 c          509 g          752 t
ORIGIN      
        1 aagctttaaa gatccaaaga gaaaagggca cgccatattg aatcatggac ggaagcatca
       61 tacctgtcct caacgtgtac aaggatttag tgcaattaaa tttacttaaa ctaatagaaa
      121 aatgctttaa ttctcaaaga tctttaaaaa gctgcggctt aagcagatat tacaagtcta
      181 ggggttttat tctatctttg tatctgttta tttgactttg aatttttcaa atctttgcct
      241 acatctggtc gtcctttttg gctgagatgg attctgatgc gcctttagtg cgccggttta
      301 taaggccaag caacatctcg ttttcttcct tcgcgagttg tttcacagag cgatttcctg
      361 cctcatgcat aacacctcgt atgatagttt gtttaagatc gggagtaaca tcaggattgc
      421 caagattttt cattaacgta gccagtgggt ccatgaactt ttccatgaat tgttgaattc
      481 ctccttcacc acctccaaca tgccataata aattggggcc catcactccc catcggagcc
      541 ctggacccca gcttacggct gaatctgcat cctcgacact caacacgcct tgcttaataa
      601 ggtacaagac ttctctatag agcgcagctt gaattcggtt tgccgcatgg cctggaaatt
      661 cttttcgtag atagatcggt ttttttccta tagatgcata aaacgcgatt gcttgttgga
      721 tagcctctgg agatgttttg ttccctccaa caacctcaac taacgggatc aggtgaggag
      781 gattgaaagg atgcccgata acacaacgtt cgggatgcct gcaacctgat tgaataacac
      841 tcatggttat ccctgatgaa cttgaggcga taatcgaatc agaaggggtg gcatcatcca
      901 tttcggcaaa taacttgatc ttcaagtccg gattctcggg tccattttcc tgaacaaaat
      961 cggcttccga taacgcctgc ttcatatttg aagtaaaagt caaccgtttg ggacttgcat
     1021 tgtttgatag acccaacaac gttagtgatt cccacgctga gtcaacattt tcgcgtaatt
     1081 tggattccgc gtttgggccg ggggcagttg caactacagt gaatccactt gcaaggtaca
     1141 gtgctgtcca actagagcca atcagacctg tgccgacaat tgcgatacga tgaatcggtt
     1201 tattaaaaga tataatccat cccctctcct tatttgctcc gtgtgatttt attccattta
     1261 cctatcaagg agaattcata catattttta agagcattca taatatgcga tcccagatag
     1321 attcccctgt gcggctaata acattttctt atctgagccg tctagttttg ccgaatagat
     1381 tgaaccgccc aagtcagtta tgaacattcg attccccttt gagatcaagg gttataccat
     1441 gccctccatc aagtgcgcca gcagatatct ggagtcaggt attttttctg tctgccttct
     1501 tcaattcgtg cgcgattcac tgtgttacca cctgaagggt cgccacgatc agtccagtac
     1561 aatatgcggg cattcaatcg agctccaggt caataggttc gggcaggtca tcgaataaca
     1621 cttcgatatc gttacgtgtg gtcgcggtct gacctttcac aaatgcgggg tttgcagaat
     1681 atgtttcggt accggtatga aatatttaaa gcatgaaaga aatttaggct cgaagaaatt
     1741 aaggaggcat taaaatgatt gtttgcaaaa gaaaggaatg gtagaatcct gttagaagta
     1801 tcgtagtatt tacacattct ataatttttt attaatacgt ctggctggga ttggtcaatt
     1861 tatatttcta tcataatcga tttgtgacag ttatgaaatc ctgatcataa gacatataga
     1921 ctttagatcc ctaaataaat atagtaatca agttgaatca ggattttgtt agggttgcaa
     1981 gtacaaagga tattccacct tcacagatga aagcggtaga tcttgacggt agtcaaaata
     2041 tttgcatggc aaatattgac ggaaaatact acgccattga caatatctgt acccatgaag
     2101 gcggccccct agccgatggt acccttgaag gatatgaagt ggaatgtcct tggcatggat
     2161 ccaaattcga tatgagaaca ggagtggtaa caaatcctcc tgccaccgag ccagaggcaa
     2221 cttatgaagt taaagtagat ggcgataata tactaattag gaaacaaaaa ggataaccaa
     2281 agggatcaat tcaattgtga tttatattgt atttgcagca aagcactcaa ttcactaata
     2341 tttcgaacta cccattagga ctatttgtaa taattctttc tagtgtgcag tatcttccag
     2401 ttagcaacat tggtaccatc atgatggaca cagctgaaat tataatgata ataaaaaagc
     2461 aaataattct aattctggaa tgaagtagtt agccattctt
//
LOCUS       DASSIK010000183         2318 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1121582, whole genome shotgun sequence.
ACCESSION   DASSIK010000183 DASSIK010000000
VERSION     DASSIK010000183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2318)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2318)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2318
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1121582"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..186)
                     /locus_tag="VFI64_03410"
     CDS             complement(<1..186)
                     /locus_tag="VFI64_03410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242368.1"
                     /translation="MKIAISGQDWREGSLGHKIKGILDDLGVESKILKDGDSPSAHNA
                     DIVLVAGGDRVILDHSHK"
     gene            complement(246..1178)
                     /locus_tag="VFI64_03415"
     CDS             complement(246..1178)
                     /locus_tag="VFI64_03415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242369.1"
                     /translation="MVCPSQGMNLTIVSNLVMDTILGEDGVQTESVGGPPCYAGLTSK
                     NLGFTINIVTRFGKNLKDEYLDILKRGGITLEPSGMSSLPTTKFLIQTLGRSRKLTLE
                     SNCEKIRLSDVEHIKTDGWLISPVLDEVPETVLEYIKNNPGKRNFVMLDPQGYTRMVD
                     PSGMIEIKNETHLNLKNISAIKLDTAELGSMTSGVFGLSGMKKIHTHYGVKFVIHTEE
                     GTIHVSDANTHFWLNLPHVKIPDSTGLGDIISSAFSCTFMRENDVVWAFCFAVGAAAA
                     ALDSKCRGVEKIPKRSKVEENASYYYNTLKYEKL"
     gene            1505..1792
                     /locus_tag="VFI64_03420"
     CDS             1505..1792
                     /locus_tag="VFI64_03420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S26e"
                     /protein_id="HET7242370.1"
                     /translation="MPKKRTSRGRTKGGKGSSGTVHCSQCGAMVPRDKAKKVTGRITF
                     VEPALAKELRAQGAYIAPSTDVKFYCVSCAVHRGIVKVRSEADRRMTGRLR"
     gene            complement(1789..>2318)
                     /locus_tag="VFI64_03425"
     CDS             complement(1789..>2318)
                     /locus_tag="VFI64_03425"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: protein motif:HMM:NF013250.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0016780 - phosphotransferase activity, for
                     other substituted phosphate groups [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HET7242371.1"
                     /translation="SPTFWSTVGLVMAIASALSFGLSYQLAGIVSLSPVVIGSIFLLI
                     SGFFDLIDGSVARVTNKSTAKGSFIDSTYDKLAEIIVFIGISVGGLANPVICLIAISM
                     SMMVSYSRAKAESLGIDLKGIGLGERAERLLVIAVMGFLPIPNSIEIGTIIVSILSSF
                     TFIQRLHYTLKKLKN"
BASE COUNT          707 a          498 c          429 g          684 t
ORIGIN      
        1 cttatgagaa tgatcaagta tcactctatc gcctccagca actagaacaa tgtccgcatt
       61 gtgtgctgag gggctatctc catccttaag aatttttgac tctacgccaa gatcgtccaa
      121 aattcctttt atcttatgac ccaaactgcc ctccctccag tcctgacctg agatggctat
      181 cttcattttc agaataataa caccggtatg ctaccgcaat ttaaatttaa aatggatatc
      241 ttcttttata atttttcgta tttcaatgta ttatagtagt aagaagcatt ttcttcaact
      301 tttgatcttt ttggaatttt ttcaacacca cgacatttgg aatctaatgc tgctgcggcg
      361 gcaccgactg caaaacaaaa tgcccacaca acatcattct ctctcataaa ggtgcaacta
      421 aaggcagacg agataatatc ccctagccct gtagaatcag gtattttaac atgagggaga
      481 ttcaaccaaa aatgagtatt agcgtcagag acatgaatgg ttccttcttc cgtatgtatc
      541 acgaatttaa caccataatg ggtatgaatt ttcttcatcc cagagagtcc aaagacgccg
      601 ctggtcatag aaccaagttc tgcagtatca agcttgattg cacttatatt tttcaggttc
      661 agatgtgttt cattctttat ttcaatcata cccgaaggat ccaccattct tgtatatcct
      721 tgcggatcta gcatcacaaa atttcttttc ccgggattgt tttttatgta ttccagtacg
      781 gtctctggaa cttcgtcaag gactggactt atgagccacc catctgtttt tatatgttct
      841 acatcactta gccttatttt ttcacagttt gattccagtg taagcttcct agatcgtccg
      901 agagtttgga tgagaaactt agtagttggt aggctcgaca tgcctgaagg ctccaatgta
      961 ataccacctc tcttgagaat gtctaagtac tcatctttca agttttttcc aaatctagtt
     1021 acaatattta tagtaaaacc aaggttcttt gatgtgagac ccgcataaca tggtggtcca
     1081 ccgacacttt ctgtttggac tccatcttca cccagaatcg tgtccatgac taaattggac
     1141 acaattgtta gattcattcc ctgtgaagga cacaccattt caatatatat ctccatgttc
     1201 aagaatcaat tatcgttcat ttgaaggaat gaagaccttt agtgattctg cgagcgatct
     1261 gctgttacaa accaagacaa ttctcctttt cttaagtcaa tacatcgatg agtgctgtca
     1321 tcaagatacc aaatttatta gcttgtataa ccatggaggc tagatcatta gtttcttcat
     1381 tgtccaatca caactataat atcgtataag attttgcatc agtgaaaata aaaattggaa
     1441 actaacagca cataaactga atcttatcag aagatttaaa gcatagaaac tgaatcaccc
     1501 taatatgccg aagaagagga caagcagagg acgtactaaa ggcggaaagg gcagctccgg
     1561 tacggtacac tgcagtcaat gcggtgctat ggtcccccga gataaggcaa aaaaagtgac
     1621 tggaagaatc actttcgttg aacccgcact ggccaaggag ttaagggctc agggtgcata
     1681 catagctcct tcaactgatg taaaattcta ttgtgtttcc tgcgccgtcc atagagggat
     1741 agtgaaagta agatcggagg ccgaccgtag gatgactgga aggttacgct aatttttaag
     1801 tttttttaac gtatagtgta gtctctgaat gaacgtaaat gatgatagga tagaaactat
     1861 tatcgtgcca atctctatag aattaggtat tggaaggaac cccatcacag ctattaccaa
     1921 aagtctttct gctctttccc ccagaccaat acccttcaag tcgattccaa gtgactccgc
     1981 cttcgcccta gaataactga ccatcatgga cattgatatc gcaatcagac agattaccgg
     2041 gtttgctaag ccgccaacgg atattccgat gaaaacaatg atttcagcaa gtttgtcgta
     2101 agttgaatct ataaaagaac cctttgcagt agatttgtta gtaactctgg caacgctacc
     2161 atctatgaga tcgaaaaaac cagaaattaa caagaagata cttccaatca caacgggtga
     2221 aagtgatact attccggcta attgataaga taacccgaaa ctcaaagcag aagcgatggc
     2281 catcaccaat ccaacagtgc tccaaaatgt tggggaaa
//
LOCUS       DASSIK010000184         3067 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1421429, whole genome shotgun sequence.
ACCESSION   DASSIK010000184 DASSIK010000000
VERSION     DASSIK010000184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3067)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3067)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3067
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1421429"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..380
                     /locus_tag="VFI64_03430"
     CDS             <1..380
                     /locus_tag="VFI64_03430"
                     /inference="COORDINATES: protein motif:HMM:NF013189.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242372.1"
                     /translation="CRVLLVLDSEANDKTKVVGSGELISEDDVVKPITKEIPIIVLAP
                     GQKLKFEAYARLGVGKDHAKWQPTSAAVVKDGKDETQSVLMIETTGSLTAEETVMAAI
                     ELLASKIKEFNNLIQSVGIKNKV"
     gene            480..779
                     /locus_tag="VFI64_03435"
     CDS             480..779
                     /locus_tag="VFI64_03435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18e"
                     /protein_id="HET7242373.1"
                     /translation="MKTEKAAIWKAVLKELSRSRSNRREVNIGRLANVTNENDVVIVP
                     GKILGSGNIGHKLTVWSFDISEVAAKKIIQVGGKLIPLDSLLQKYPSGKGIRIIG"
     gene            772..1248
                     /locus_tag="VFI64_03440"
     CDS             772..1248
                     /locus_tag="VFI64_03440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HET7242374.1"
                     /translation="MVEQNAQKNDNLPLTIDATDCIAGRMCSQISKLLLKGHSVRVVN
                     AEKTMMSGNRYMIIDSYRKFLTISSATNPINGPVHPRRPDRILTKMIRGMLPKRKSSG
                     ISSFKRLRVYISVPPELKDAKMETFKNSKIRKPQSYYLSLGDVAKEIGWSGVLNYE"
     gene            1241..1684
                     /gene="rpsI"
                     /locus_tag="VFI64_03445"
     CDS             1241..1684
                     /gene="rpsI"
                     /locus_tag="VFI64_03445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HET7242375.1"
                     /translation="MNKIDLYPGQRKTSRAVATISKGNGKVRINNIPAELVTPQIAKE
                     LVLTPLKLIGDYRQKVNVDVRVHGGGFMGQAFASTVAISKALVGDGKGGRDPKDHPLT
                     KSVRTEIRKRINEFDRHLLAGDPRQSESKKFGGPGPRRRKQKSYR"
     gene            1991..>3067
                     /locus_tag="VFI64_03450"
     CDS             1991..>3067
                     /locus_tag="VFI64_03450"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004372 - glycine hydroxymethyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0019264 - glycine biosynthetic process from
                     serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HET7242376.1"
                     /translation="MTMDPKESYNKIFSLIEEHHRWFSNSLPLIASENIPSPAVREAV
                     ASDFANRYAEGWPGERVYAGCTYIDKVELICNELAQRVFQAEFADCRATSGVVANLAI
                     YSAFSNPGDYMLAASIPSGGHISHGKKEHFGTAGFVHGLNIEHYPFWKEEMTIDVDAT
                     KKKILGMISDNKKPAIAMFGGSLFLFPHPVEELAEFMHEHDIYVNYDGAHVAGLIAGG
                     EFQAPLKEGADSMTMSSHKTLWGPQGGIIVSLQKHAENIKKAIFPGNTSSHHLHHVAG
                     KAVALAESMEFGKDYAKQVIQNAKSLAQFLAASGFGVLGEKRGYTESHQIAVDVSKFG
                     DGGTIEQELEKANIILNRQLLPGDI"
BASE COUNT         1018 a          514 c          723 g          812 t
ORIGIN      
        1 ggtgtagggt gttgttggta cttgattcag aagctaacga caaaacaaaa gttgttggct
       61 caggggagtt gatttcggag gatgatgtcg taaagcccat aactaaagaa attcctataa
      121 tagtcttggc gccaggacaa aaactcaagt ttgaagctta cgcaaggttg ggagtcggaa
      181 aggatcatgc gaaatggcag ccaacatcag cagcggtagt taaagatgga aaagatgaga
      241 cccaatctgt acttatgatt gaaacaacgg gatctttaac ggccgaagaa acggtaatgg
      301 ctgcaataga actgcttgca tcaaagataa aagagtttaa taatttaatt cagtcggttg
      361 gtattaaaaa taaagtctag gtacatttat ttggggttca ttaataacga cggaaagaag
      421 gatggtaatt tatgcctaat gatagcctga ttaatacaat tcggactctt cggaggactt
      481 tgaaaacgga aaaagctgct atatggaaag ctgtgctaaa agaactctca aggtctaggt
      541 ccaatagaag agaggtaaat attggtaggt tagcaaatgt taccaatgaa aacgatgttg
      601 taattgtccc tggaaagatt ttgggctcag gaaatatagg tcataagctg acggtatggt
      661 catttgatat atcggaagtt gcagcaaaga agatcataca ggttggtggc aaattaattc
      721 ctctcgatag tcttttacag aaatatccaa gcgggaaggg aataagaata attggttgaa
      781 cagaacgccc aaaagaacga caatctgcca ttaactatag atgccacgga ttgtattgcg
      841 ggaagaatgt gctctcaaat atcgaagctt ttgcttaagg ggcatagcgt tagagtggta
      901 aatgctgaga agaccatgat gtcagggaac agatatatga ttattgactc ttatagaaaa
      961 ttccttacaa ttagttcggc gactaatcct ataaacggac cagttcatcc aagacgacct
     1021 gatagaattc tgacaaaaat gataagaggt atgctaccca aaaggaaatc gagcggaatt
     1081 agctcattca agagattgag ggtgtatatc tcagtgccgc ccgaacttaa ggacgctaag
     1141 atggaaacat tcaagaattc aaagattagg aaaccacaat cgtattattt atcacttggt
     1201 gatgttgcga aggaaatcgg ctggagcgga gtactgaact atgaataaga ttgatctata
     1261 tccaggacag agaaagacaa gtagagctgt agcaactatc tccaaaggaa atgggaaagt
     1321 cagaataaat aatatccctg cggaactagt gaccccccaa atagcaaagg agttggtttt
     1381 aaccccactg aaattgatag gtgactatag acagaaagta aatgtcgatg tgagagttca
     1441 tggtggaggt ttcatgggtc aagcatttgc aagcacggtt gcaatttcaa aagcgcttgt
     1501 gggcgatgga aaagggggtc gagatccaaa ggatcatcca ttaacgaaaa gcgtgcgcac
     1561 agaaattaga aaaaggatta acgaatttga tagacatctt cttgcggggg atcctagaca
     1621 gagcgaatca aagaagtttg gtggtccagg tcctagacgt aggaaacaga aatcgtatag
     1681 atagctcgat cgaacagtcg acgtcataat cttgttgctt gaaatatgtg atcatcttta
     1741 ggatggtgag aatcgataat gctctgttat ttttttgcca taacaatccc cgcaaagttc
     1801 gccggaaata ttccattgtc tcattgcttt gtatctaaat gttagcacgt taccgcataa
     1861 ggcacacttc tgctctctgt ccataaccgt tgataatggc ggaattagag taaattaaaa
     1921 gttatgacat atactatata atcaggggca atattttaaa ttaggatata attgccaaaa
     1981 aatcgactat atgacaatgg atcctaaaga atcgtataat aagattttct cccttattga
     2041 agagcatcat agatggttca gcaattctct cccacttatt gctagtgaga atatacctag
     2101 tcctgctgta agggaagctg tggcctcaga tttcgccaat aggtatgcag aaggatggcc
     2161 tggtgaaagg gtatatgctg gatgtacata cattgacaaa gtagaattga tttgtaatga
     2221 attagcacaa cgagtttttc aggctgaatt tgccgattgc agagcaacat ctggggttgt
     2281 tgcaaatctt gcgatttact ctgctttttc taatcccgga gattatatgt tggccgcctc
     2341 aattcctagt ggagggcata tatcacatgg aaaaaaggaa cattttggca ccgcaggttt
     2401 cgtgcatggg ttaaacatag aacattatcc attttggaag gaagaaatga caattgatgt
     2461 cgacgcaacg aagaagaaga tattggggat gatttcggat aataaaaaac cggcaatagc
     2521 tatgttcgga ggaagtttgt ttctttttcc gcatcctgtc gaggaattgg cagaatttat
     2581 gcatgaacac gatatctacg ttaactatga tggtgcacat gtagcgggtt taattgctgg
     2641 aggagaattc caagctccat taaaggaagg agccgattcc atgacaatga gttcacataa
     2701 aactttgtgg ggaccacagg gcgggattat cgtgtcattg caaaaacacg ctgaaaatat
     2761 aaaaaaagcc atatttcccg gaaataccag cagtcatcat ttgcatcatg tagcaggaaa
     2821 ggcggtcgca ctggccgagt ctatggaatt tggaaaggac tacgcaaaac aagttataca
     2881 aaacgcaaaa tcactagccc aatttcttgc agcctccggc ttcggcgttt tgggggaaaa
     2941 aagaggatat accgaatccc accaaattgc agttgatgtt tctaaattcg gtgacggcgg
     3001 tactattgaa caggaattag aaaaagcgaa tatcattctt aatagacaat tattgcctgg
     3061 tgatatt
//
LOCUS       DASSIK010000185         2262 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1121914, whole genome shotgun sequence.
ACCESSION   DASSIK010000185 DASSIK010000000
VERSION     DASSIK010000185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2262)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2262)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2262
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1121914"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            879..1733
                     /locus_tag="VFI64_03455"
     CDS             879..1733
                     /locus_tag="VFI64_03455"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HET7242377.1"
                     /translation="MQKKIALVTGSSSGIGYETALLLARNGFHTCATMRNTEKSESLR
                     KIAEKEKLPIMFVQLDVDDDDSVDRAIGEIEKELGKIDVLINNAGYGLVGGFEDLAPD
                     EIRQQFETNLFGVIRVMQRVLPGMRTRRNGIIVNISSGAGIVGFPCMSGYVSTKFALE
                     GLSESIAHELLPFGIKVIIIEPGVIKTDFVRNSVTSKRALNESSAYFDILGKIRENLI
                     LMQEHATSPADVAKIIFDAINHSEPNLRYVVGNDIAMVAEAKRNLPEAEFRKMMIQDI
                     LRDLSKDD"
     gene            2170..>2262
                     /locus_tag="VFI64_03460"
     CDS             2170..>2262
                     /locus_tag="VFI64_03460"
                     /inference="COORDINATES: protein motif:HMM:NF014055.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase regulatory
                     subunit"
                     /protein_id="HET7242378.1"
                     /translation="MPDTSQLIVRRIRNGTVIDHIEAGKALFVLR"
BASE COUNT          757 a          394 c          447 g          664 t
ORIGIN      
        1 atatgccaaa tcgccttaag atacatttct atgtgctcta attccgcagt accaacgaaa
       61 agttcttctt cttgattcat gtcaaaagcc tatccttagg gttctcgtag tgaatatcat
      121 taaggtcatt tctgctttga tctttgtgaa gccttgagta tgaaaacaaa gaaggaatat
      181 cacatcgtgt taatcacaat gacgcagcaa taatactctg gataaaatat atctgatcaa
      241 tgacaaggaa atccagctgc atgtcgcata tcgtggtaaa attcatgaag ccattttgta
      301 tcaaatgctt tttgaccctg aaccgaacta aataggcgtc cttgatcaaa tccaacaaca
      361 aaaatagata gtaaaaaaat tcccaaaagc aaacatatcg ctattttcgg aacatcatcg
      421 acgtctaatt tagcttgcct taatgaatac atttagtatc aaagtgtcaa ccaactagat
      481 aaactctcgt cgatggaaat gcaaaattaa agcattatct ttagttgatg ttctgaaaat
      541 tttggcaaga aatcatatca gctgtagatt agtaagaaaa caaagaacca aactatggtc
      601 ttgggtataa atctagatca catgtaatct tgattaagac ggggaaataa tgtgatgcaa
      661 gaaaatcttt caatttttga agttcaactg agaagcatct gtcgaaagga tcttttgata
      721 ttcgatcagt agacaatatg acgagtgcta tgtatcttac gagggaccaa taaacactaa
      781 tctgttgggt cttattgtat tttctatatt tcaactttgc aagctcaaat ttttagttcc
      841 atttaagtag ttgaaaacac aattatcact cgaaaacttt gcaaaaaaaa attgcattag
      901 tcaccgggag ttcgagtgga ataggttatg aaacagcctt attgcttgcc agaaatgggt
      961 tccatacttg cgcaactatg cggaacacgg aaaaatctga atcgcttcgc aagatagcag
     1021 aaaaggaaaa acttccaatt atgtttgttc aactagatgt agatgatgat gattcggtag
     1081 atagggcgat tggagagatc gaaaaggaat tagggaaaat agatgtttta ataaacaacg
     1141 cagggtacgg tctagtgggg ggttttgagg atctagcccc agatgaaatt agacaacaat
     1201 ttgaaaccaa tttgttcggc gtaataagag tcatgcaaag ggttcttcct ggcatgcgaa
     1261 cacgaagaaa tggcataatt gtgaatatta gctcgggtgc tggcatagta ggatttccat
     1321 gtatgtcagg ctatgtgagt acgaaatttg cattggaggg ccttagtgaa tcgattgcgc
     1381 atgagctgct tccatttgga atcaaagtta tcataataga accaggcgtt attaaaactg
     1441 attttgtacg aaattctgtt acttcaaaaa gagcattgaa cgaatcttct gcatattttg
     1501 atattctagg gaaaatccgt gagaatctca tccttatgca ggaacatgct actagtcccg
     1561 cggatgttgc aaagataatt tttgacgcga taaatcacag cgagccgaat cttcgatatg
     1621 tagttggtaa tgacattgcc atggtcgccg aagctaagag aaacttgcct gaagctgaat
     1681 ttcgaaaaat gatgatacaa gacattcttc gggacttgtc aaaagacgac tgactacaaa
     1741 tcagtcgact tattcaatat actttatcta ccgtcgccat aattaaatct ctagggtact
     1801 atttagcact attcgaaaaa ggggaaatcg aaatgaaatg acttggagat tgtttcaccc
     1861 cactcttcaa gatgctatcc aacatgttga agcaaaaaca aaactggcaa aacctatttg
     1921 aatacaaatt agctgaatca aaaatttacc ttttaatatc cagaagaaga tatgaggaat
     1981 actatgtctg tccttaagtt tgctcagctc ctctcgccgg atcaatgtcc gcagggtttt
     2041 gttgggtcgg aatgagcgtt aattgccgtg tcattaagat tcagcgttgt cgtttctgac
     2101 tcaaggacct aaatccaact gacaagagaa tccttaataa atcagatcat aaacatattt
     2161 tagctatcga tgcctgatac cagtcaatta attgttcgaa gaattagaaa tggaactgta
     2221 atcgatcaca ttgaggcagg aaaggctctt tttgttttac gg
//
LOCUS       DASSIK010000186         9861 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1341214, whole genome shotgun sequence.
ACCESSION   DASSIK010000186 DASSIK010000000
VERSION     DASSIK010000186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 9861)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9861)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9861
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1341214"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            533..1222
                     /locus_tag="VFI64_03465"
     CDS             533..1222
                     /locus_tag="VFI64_03465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242379.1"
                     /translation="MSSFSEHDIRRAAEIRELLIKEISEKEEELEKLRNMLLLVDAIL
                     KGGSFKPASTISQGDRSAKFEVGSSVGSEGTHIDENQESIITEKPVPVARSTIRNDPY
                     YVEEIESKELRRVRDNLLLANSDITSANIKIIPVENLSLNINVSPFRTFFLNRILDGM
                     KSKDNEKIERGEIEESYRLDYQLDTDTEGTIRSITISNYRERERLQEILSTVTWVMSK
                     MVEKGSHQTNG"
     gene            1215..2747
                     /gene="guaA"
                     /locus_tag="VFI64_03470"
     CDS             1215..2747
                     /gene="guaA"
                     /locus_tag="VFI64_03470"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003922 - GMP synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006177 - GMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HET7242380.1"
                     /translation="MDKIIVLDFGSQYSHLICRRIREDNVFCELLPYDSPASVIMKLD
                     PKGIILSGGPSSVYSPNSPKPDKEIFHSGIPILGICYGHQLLVNEFKGKVKRTSQKEY
                     GYADLVIDDSSDLFRGVGKKIKCWMSHADAASYIPSGFEVLGHTKSSASAAIANKRKK
                     FYGIQFHPEVAHTENGSKILKNFSRYISKARPEWTMENFVKSSIGEIRSLVKDEKVLC
                     AASGGIDSTTLAVLLHRAVGENLTCIFVDNGLLRKDEAKLVPEILRDKLGLNLICVDS
                     QEQFLRRLRGIKDPEMKRKIVGEEFAKVFMEVTKRQGPFQWLAQGTLYPDIIESGVSK
                     GPAAVIKTHHNVGGLPKWLNMKMLEPFKNLYKDEVRKIAGLLNIPNQFLMRHPFPGPG
                     LAVRIIGEVTEEKIRIARHASSIVEEELRNKGWHDKVWQAYAAVGDDHAVGVLGDERV
                     YGYLVTVRVVESLDAMTADWSRLPYELLQSISNRITNEVEGVTWVTYAISSKPPSTIE
                     PQ"
     gene            complement(2801..3817)
                     /locus_tag="VFI64_03475"
     CDS             complement(2801..3817)
                     /locus_tag="VFI64_03475"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase family protein"
                     /protein_id="HET7242381.1"
                     /translation="MQYGLQDSVVVLPDFFMDRIVKFDSKSQFLDVINYKTRLGGGSI
                     RGIRTFDIKGGNAANVAYCLAKFGLPVTLFTIANEIGSSVLQKIFSKFEKNADLRIVN
                     GKHGVTTSLEFKDENSISNIMMSDIGDIETFGPDKINHEEDLKKIFSAKCVILTNWAS
                     NLKGTELANHVFRNSPNALHFIDPADIDVRRDEFKDALNVISEVTDVLSINENECDSL
                     TRALGFGSILSSEPTNTDLIKKAARIISDKFGIEVDLHTRIGAAWSNGKEVSFEASFN
                     VPVHTMTGSGDCWDAADVVGHLAGLDPNERLLFSNACSALYIQNESFESPTMDELVQF
                     LRNS"
     gene            complement(4128..5801)
                     /gene="thsB"
                     /locus_tag="VFI64_03480"
     CDS             complement(4128..5801)
                     /gene="thsB"
                     /locus_tag="VFI64_03480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thermosome subunit beta"
                     /protein_id="HET7242382.1"
                     /translation="MESIQATAGGMPVIILREGTKESKGREAQRNNFMAAKLIADMVK
                     SCLGPRGMDKMLVDTLGDVTITNDGATILKEMDVQHPAAKMMVEVAKSVDNEVGDGTT
                     SSVILAGALLEKAEELVNKDVHPSVIVDGYTAAAEHALSLLQRIAVKVDTNDKDLLRK
                     IAQTSMYSKLVSDDSPMLAQIVVDASKQISESSSDGKTLKVDLDNIKVEKKAGASIHD
                     TKLIKGIVLDKEVVHSGMPKKIEGAKIALINSALEIEKTEMSAEIRINDPKQMQMFLE
                     EENRMLKSMVEKIKNVGANVLLCQKGIDDLAQHYLAKEGILAVRRVKESDMSKLAKAT
                     GARLVNNLDDLTSKDLGSANLVEERKVETDKWVFIEGCKNPKAVTILVRGGSQRVVDE
                     ADRSLHDALMVIKDVLEKPAIVAGGGAPEAYIANELRHWSSNLEGRSQLAVHKFADAL
                     DTIPLALAVNAGMDPIDTMTSLRSKQSKGSKWTGVDVRNTVVADMYKQDVLEPLAVKE
                     QIIKSATEAATMLLRIDDVIASSKSKMPAGPPGGGGMGGMGGMGGMDME"
     gene            complement(6317..6763)
                     /locus_tag="VFI64_03485"
     CDS             complement(6317..6763)
                     /locus_tag="VFI64_03485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HET7242383.1"
                     /translation="MAVFYLMDITFATGANKERRIKVSSTQTTSFLWEGENVFSTPSM
                     IAEMEETCRLLLKEQFLQNPESDSVGTLVNIKHLAATPVGTEVLLKAKITGVNDQRIT
                     FDVEAFDKIDKIGEGVHERFVINIPRFRAKFDEKLKKIQIEDDIQS"
     gene            7176..7448
                     /locus_tag="VFI64_03490"
     CDS             7176..7448
                     /locus_tag="VFI64_03490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L44e"
                     /protein_id="HET7242384.1"
                     /translation="MQKEFRKFCPKCKTHTSQSVAIYKKGKDRKTALGARRHAEDKKG
                     YGGQKFPELKRTAKTTKKITLKYTCKTCQRKTMKEGMRMRKLEIQP"
     gene            7463..7660
                     /locus_tag="VFI64_03495"
     CDS             7463..7660
                     /locus_tag="VFI64_03495"
                     /inference="COORDINATES: protein motif:HMM:NF013803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S27e"
                     /protein_id="HET7242385.1"
                     /translation="MKKENILIPKPKSKFLSVQCPECQEKMIIFSHTTIDIPCKSCGK
                     LIAVKRGGKARILGKLLAALD"
     gene            complement(7657..8286)
                     /locus_tag="VFI64_03500"
     CDS             complement(7657..8286)
                     /locus_tag="VFI64_03500"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTP transferase domain-containing protein"
                     /protein_id="HET7242386.1"
                     /translation="MNRPMMAAIMCGGKGSRMNQGLMFEKPMLLFRGKPMVGHVLDAL
                     VSSKRFSSVVGITSRHTTATSKYLRNLNNCVNGLHLIETSGFDYSTDLGQVIEMLKPS
                     EIIVVPSDLPILKAETINDILKSWNPEASFVSIIMEKSFIESMGLIPSIVISVEKVEY
                     CYSGISMIDTSRILAGVEANESYIVMNRADIAFNINTMEDLKAANAYLN"
     gene            complement(8283..9029)
                     /gene="cobS"
                     /locus_tag="VFI64_03505"
     CDS             complement(8283..9029)
                     /gene="cobS"
                     /locus_tag="VFI64_03505"
                     /EC_number="2.7.8.26"
                     /inference="COORDINATES: protein motif:HMM:TIGR00317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008818 - cobalamin 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobinamide-GDP ribazoletransferase"
                     /protein_id="HET7242387.1"
                     /translation="MGSDGILSALSFLTIIPVPRSGNTDISITARNMYLFPIVGAIIG
                     IIVGIFAYGLSIYLENYLVGFFVTIAILLITGMQHADALADFADGLMVKGSKDAKRRA
                     MSDPAVGTAGAISLVVCIIGLIIAISTYNSAFKLLISIVAAEVIAKYIMVIEAGSGRS
                     AWEGFSSPFTREMKDKKKIAFATISTLIIVLTLRGYIGLISLGTGLLIAGVICHLSTK
                     NFGGLTGDVLGASNEITRLSSLLVLSLLVV"
     gene            complement(9019..>9861)
                     /locus_tag="VFI64_03510"
     CDS             complement(9019..>9861)
                     /locus_tag="VFI64_03510"
                     /inference="COORDINATES: protein motif:HMM:NF002281.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin biosynthesis protein"
                     /protein_id="HET7242388.1"
                     /translation="LKSENSRIEKLNGMVLTLFLASGACILNQLLSLYIYSIFSFIGF
                     AIYAAIVLKSSIAILTMEKHVNAIIRALEKNDLEGARRNLSYIVSRNTSTLDTQHILS
                     GTIESIGESVVDGIVAPLFYYSFFGPSGAVGYRVVNTLDSMIGYKDKYHLNIGWMSAK
                     VDTILNYVPARLCAMLMILSARIVGADWKNSIQVLGTDHHNTCSVNAGYPMSTMAGAL
                     RIKLEKIDEYTLGSELEPLSIEKCRTAIKIMKVTTIVFCLLVSFPLIISLSAIGWWNF
                     FFGF"
BASE COUNT         2941 a         2024 c         1890 g         3006 t
ORIGIN      
        1 gggttttgcc aaactatgtt ctatgaaacc gtgagagata agtaggatct agagcttgtc
       61 atgtttagag catacaagtt tcgtttgata tgcaagatag aagagaaata agagataatg
      121 ggattccgag attatgattc gtagatggaa agtttgtgat ggtagtaaaa agcaaaagga
      181 aatcgtctac caattaaatg gttagtatta ttccccttag aaatactgtg tatgggaaca
      241 tccgtatagc cccagagttg attgttgcgc attaatcagt ttgactcgcc tcatatgatc
      301 aatggacagt aaggtatagt gttccttctg ctaaaaaacc gcatgacgga aggttataac
      361 agaaaattgt ttgttgtcca ttcacaagac ccgctgtttg aatgtgggga tacacacgcc
      421 tatagaatac gtttcgagtc cgaaatcaac ctttgttata cgcgatcgtt agtagttctc
      481 attttatcgt gaaaaaccat tataatacct tctcgttaaa aattggccgc acatgtctag
      541 cttctctgaa catgatattc gtcgcgcagc agagatacgg gaattgctga tcaaggaaat
      601 ctctgagaag gaagaggagc ttgaaaaact tcgtaatatg ttattgcttg tagatgccat
      661 cttgaaaggt ggcagtttca aacctgcctc taccatttca cagggggatc gtagtgcaaa
      721 gttcgaagtg ggatcttcag tcggatcgga agggacacat atagatgaaa atcaagaaag
      781 tataattaca gaaaagccgg tccccgtagc aagatcgaca atcagaaacg atccatatta
      841 cgttgaagag attgaaagta aagaactgcg acgggttaga gataaccttc tcctagcaaa
      901 ttccgacatt acttcagcga atataaagat cattcctgtt gagaatttgt ccctcaatat
      961 caacgtctct ccttttagaa catttttctt gaacaggatt ttagatggaa tgaagtcaaa
     1021 agacaacgaa aaaattgagc gcggtgaaat cgaggaatct taccgtcttg attatcaatt
     1081 agatacagat actgagggaa ctataagatc tattaccata tctaactacc gagaaagaga
     1141 gcgactgcag gagattctta gcacagttac atgggtcatg tccaagatgg tggagaaagg
     1201 aagtcaccaa acaaatggat aagattatag tattggattt tggatcgcag tacagccacc
     1261 tgatatgtag acgtataagg gaagataatg tgttttgtga actattgccc tatgactctc
     1321 ctgcaagtgt aattatgaaa cttgacccta aaggtattat tctttctgga ggtccttcaa
     1381 gtgtttattc tccaaattca cccaaaccgg ataaggaaat attccactca ggaatcccaa
     1441 tcttgggcat ttgctatgga catcaacttt tagttaacga gtttaaagga aaagtgaaac
     1501 gaacctctca aaaagagtat ggatatgctg atctggtcat tgatgattct tctgatcttt
     1561 tcaggggagt tggcaagaag ataaaatgtt ggatgagtca tgccgatgca gcttcttata
     1621 taccatcagg atttgaagtc ttgggtcaca caaaatcgtc tgcttcggct gccattgcaa
     1681 ataaacgaaa aaaattttat ggaattcaat tccatcctga agttgcacac acagaaaatg
     1741 gtagcaagat tttaaagaat ttttcacgct acattagcaa ggcaagaccc gaatggacaa
     1801 tggaaaattt tgttaagtct tctatcggag agataaggag tcttgttaag gacgaaaaag
     1861 tattgtgtgc ggctagcggg ggcatcgatt cgacgacact tgctgttcta ctccatagag
     1921 ctgtgggaga gaatctaact tgtatcttcg ttgacaacgg attgttaagg aaggatgaag
     1981 ccaaactagt gccggagata ttaagggata aattgggatt gaatttaatc tgtgttgatt
     2041 cacaagaaca atttctgaga aggttgagag gtattaaaga tccggaaatg aagaggaaaa
     2101 ttgtgggtga agaatttgca aaagtattca tggaagttac taaaagacaa ggaccttttc
     2161 agtggcttgc ccaaggtact ttgtatcccg atatcattga gagtggagtt tctaaaggac
     2221 ctgcagctgt cataaaaact catcacaatg taggtggcct cccaaaatgg ctaaatatga
     2281 aaatgttgga gccattcaaa aatctctaca aagacgaggt acgaaagatc gccggtctcc
     2341 tcaatatccc aaatcaattt ttgatgagac atccgtttcc tggtcccggt ttggctgtac
     2401 gaattatagg agaggtgacc gaggagaaga ttagaatcgc gaggcatgca agcagtatag
     2461 tggaagaaga gctaagaaac aaaggatggc atgacaaagt gtggcaagct tacgccgcag
     2521 ttggcgacga tcacgcagta ggcgtattag gcgacgagcg ggtttacgga tatttggtga
     2581 cagtaagagt cgtagaatct ttggatgcta tgactgcaga ctggagtaga ttgccatacg
     2641 aattgttgca atctattagt aatagaatta ctaatgaggt tgaaggtgtg acatgggtca
     2701 cttatgctat atcaagcaaa cctccatcaa ctatagaacc acagtagttg ctccatacgg
     2761 tcattcttaa tatccattgg acgtacgttc atcgataggt ctagctattc cttagaaatt
     2821 gtacaagttc gtccatagtg ggagactcga aggattcatt ctggatgtac agggctgaac
     2881 acgcattcga aaataacagt cgctcattgg gatcgagtcc tgcaagatgg cctactacat
     2941 cggcggcatc ccaacaatct cctgaaccag tcattgtatg aacaggaaca ttgaaggagg
     3001 cctcaaacga cacctcttta ccattggacc aggcagctcc tattctagtg tgtaaatcaa
     3061 cttctatgcc aaatttatca gagataattc tggccgcttt ttttatcaag tcggtgtttg
     3121 ttggttctga agataatatc gatccaaatc ccagcgcacg tgtgagggag tcacattcat
     3181 tttcattaat gcttaagaca tctgtaactt ctgatatcac gtttaacgcg tctttgaatt
     3241 catcccttct aacatcaatg tctgcaggat caataaagtg aagggcattt ggcgaattcc
     3301 tgaagacatg attagccagc tctgttccct ttaaattact tgcccaattt gtcaatatca
     3361 cacatttcgc tgaaaaaatt ttcttcagat cttcctcatg gtttatctta tcgggtccaa
     3421 atgtctcaat gtctccaata tcgctcatca ttatattcga gatcgaattt tcatctttga
     3481 attctaatga tgtcgttaca ccatgtttac cattgactat tcggaggtca gcgttttttt
     3541 caaattttga aaagattttt tggagcaccg atgaaccaat ctcatttgcg atcgtgaaca
     3601 gtgtaacagg cagaccaaat tttgccaagc agtatgccac attagctgcg tttccgcctt
     3661 tgatgtcaaa tgttctaatg ccgcgtatac tgccgccccc aagtcttgtc ttgtaattta
     3721 tcacatccaa gaattgactc tttgaatcaa atttaacaat cctgtccatg aaaaaatcgg
     3781 gtaggaccac aacagaatct tgtagtccat attgcattaa tcgctcaagc acatacgaag
     3841 tatgcacttt gagttatatg gattttctta aacggtcgta tttcccaagt tgttgttttg
     3901 atattaatta atcaacttta tgattcgcaa cttgccgtca tctattgaga aactattacc
     3961 ggtagataag tacctggagg tgattaccac tgtaactgcc tactccagga tttcattttc
     4021 gaaatatagc tgagtggatc aagatgagat agattcctaa aatgaatttg ttattggtag
     4081 atatctaatc aaatccaaga aaaatgaatg gtagaaattt tttggattta ctccatgtcc
     4141 attccgccca ttccgcccat tccgcccatt ccgcctcctc ctgggggacc agctggcatc
     4201 ttggacttgc ttgaggcaat tacatcatct attcttagaa gcatagtcgc ggcttcagta
     4261 gcagatttaa tgatttgctc cttcacggca agaggttcta aaacatcctg tttgtacata
     4321 tcagcaacca cggtatttct aacgtcaact ccagtccatt tcgatccctt actttgtttg
     4381 gatcttaatg atgtcatagt gtctattggg tccataccag cattgacagc tagagctaat
     4441 ggaattgtgt ctaacgcatc cgcaaattta tgaactgcta gctgagatct tccctctaga
     4501 ttacttgacc agtgacgaag ttcgtttgca atatatgctt ccggtgcacc accacctgcg
     4561 acaatggctg gtttttcgag aacatctttt atgaccatta aagcatcatg gagtgagcga
     4621 tcagcttcgt caacaaccct ttgtgaccca cctctaacga gtattgtaac ggctttagga
     4681 tttttgcatc cttctataaa aacccatttg tcagtttcga ctttacgttc ttctacaaga
     4741 tttgccgatc ctaagtcctt agaagttaaa tcatccaggt tatttactag tcgcgcacct
     4801 gttgccttag ctaactttga catatcactc tcttttacac gcctaactgc caatataccc
     4861 tcttttgcca agtagtgctg agctaaatca tcaataccct tttggcaaag aagcacattt
     4921 gctcccacat tctttatttt ctccaccata gatttcagca tcctattttc ttcctccaag
     4981 aacatctgca tttgctttgg atcattaatt ctaatttctg cactcatctc cgtcttttct
     5041 atttcgagcg ctgaatttat cagggcaatt ttcgcgcctt ctatcttctt tggcattccg
     5101 gagtgtacta cttctttgtc aagtacaatt cctttgataa gtttagtatc atgaattgat
     5161 gctccggctt tcttttcgac ttttatatta tctaaatcaa ctttcagtgt ttttccatca
     5221 gagctacttt cactgatttg ttttgaagcg tctaccacta tctgtgctaa cattgggcta
     5281 tcatcagaga ccagctttga gtacatactt gtctgtgcaa ttttcctaag taggtctttg
     5341 tcattagtgt ccactttgac tgcgatcctt tgaagtagtg aaagcgcatg ttctgctgca
     5401 gcggtataac catctacaat aacagaagga tgtacatctt tgttaactag ttcttccgcc
     5461 ttttccaaca atgcccctgc aagtattact gaagatgtcg ttccgtcccc aacttcgttg
     5521 tccacagact ttgctacctc aaccatcatt ttggcggcag gatgttgaac gtccatttcc
     5581 ttcaaaatag tagcaccatc attggttatg gttacgtccc caagcgtgtc aacgagcatc
     5641 ttgtccattc ctcttgggcc tagacaagac tttaccatgt ctgcaatgag tttcgcagcc
     5701 ataaagttat tcctttgtgc ttctctacct ttactttctt ttgtcccttc ccttaatatt
     5761 ataactggca ttccaccagc agttgcttga attgattcca ttctcacata tcacctagaa
     5821 gaatgctaca cttttttctc ttgcctcttt tatagtttta caaaaccttt gggttctact
     5881 aaactaaagt aatcttcacg acattgcgtt gacaatgaaa tataatttga ctgatcgtaa
     5941 aattgtcttc gtcgagagga tctgattttt atcagcgata aaatgagtcc ttcaattgat
     6001 gacgaaaagc attctaggag cgacattgaa cgtttcattt gcttcccggc atatctccgc
     6061 tcttttctcg taattcttta caataaagaa gatttgacag ctattggcaa gagctgctaa
     6121 tttcttatcc ggagatgaat cgttttccta ctctatcttc agatgatctt caaaacagat
     6181 tgattaattt gcttggaact caatccgggt gcctctttca tccagaagaa cacgaactct
     6241 cgttaaaatg gaacaggcaa tagtgatgag aatcgccctt gatagaaact ctctcacggc
     6301 ttcaactaga gagtatttaa ctttgtatgt catcctctat ctgtattttt tttagctttt
     6361 catcaaattt tgccctgaat ctgggtatat ttataacaaa ccgttcatgg acaccttctc
     6421 ctattttatc tattttatca aaggcctcca cgtcaaatgt aattctttga tcattgacgc
     6481 cagttatttt tgccttaagt agaacttccg tgcctaccgg cgtagctgca agatgtttaa
     6541 tatttacgag agtacccaca gaatctgatt caggattttg taggaactgc tctttcaata
     6601 atagcctgca tgtttcttcc atctctgcga tcatagaagg agttgaaaat acattttccc
     6661 cttcccaaag gaagctggta gtttgagtcg aactcacttt aatgcgtctc tctttgtttg
     6721 ccccagtagc aaaagtaata tccatcaaat agaatacagc cataatttac ttttagagtt
     6781 ttctttaaat aaaattgcct tagacttact aatacaaaaa gaaaagaagg gttgctgtcg
     6841 gattacctct ggcgtcttgc acctgagata atcgcgtata ctagtcctac tgttaacccg
     6901 aaggctaatg gtatccatac tccgaagctc tctacactca catatatctg ctgaatcagg
     6961 ctatcgaaca ttattagtca tggtataaag taatcagtat attagatttt ctcaagataa
     7021 tctcaaaaaa tgcattatcg cccatttcgg aaggtcgagt gacagtccct tatcatgtat
     7081 cttcacgttt tatatgctgg ccaattccct tagtttatta cgaatcagta cgatgtcctt
     7141 aaattaccgg cattcaagat ctttcagata tgaaaatgca gaaggaattt cgcaagttct
     7201 gcccaaaatg taagacccac acttcgcagt ccgttgctat ttataaaaag ggcaaggata
     7261 gaaaaactgc cttgggtgca cgtcgtcatg ctgaagacaa aaagggatac ggaggccaga
     7321 aattcccaga actcaaacga actgcaaaga cgacaaaaaa gattactcta aaatatacgt
     7381 gcaagacttg ccagagaaaa acgatgaaag aaggaatgag gatgcgaaag ttagaaattc
     7441 aaccataata ttagtggtaa ttatgaaaaa agagaatata ctgattccaa aacctaaaag
     7501 caagtttttg tctgtgcagt gccctgaatg tcaggaaaaa atgataattt tctctcatac
     7561 tacaatcgat atcccatgta aatcttgtgg aaaactaata gccgtgaaga ggggagggaa
     7621 ggcacgaata ttgggaaagt tgttagccgc tctggactaa ttaagatagg cgttcgctgc
     7681 cttaagatct tccatagtgt ttatgttaaa agctatatct gccctattca tcacaatata
     7741 tgattcattt gcttctaccc cagcgagaat tctggacgtg tcgatcatag agattccaga
     7801 ataacagtat tcaactttct caacagaaat tacaatgctt ggtattaatc ccatactttc
     7861 gatgaaactt ttctccatga tgatagacac gaaacttgct tcaggattcc agcttttcag
     7921 aatgtcattt attgtttctg ctttcagtat tggaagatca gaaggaacaa caattatttc
     7981 tgagggcttt aacatttcaa taacttgtcc aagatccgta ctataatcaa atccagatgt
     8041 ttctattaaa tgaagtccat tcacgcaatt attgaggtta cgcaaatatt tcgatgtggc
     8101 agttgtatgg cggctagtta tgcctactac cgaactaaat ctctttgaag ataccaatgc
     8161 atcaaggaca tgtcctacca taggttttcc tctaaaaagg agcataggtt tttcaaacat
     8221 taatccttga ttcatcctag acccttttcc gccacacatt atagcggcca tcatggggcg
     8281 attcatacca ccaatagaga cagcaccaac agtgatgata gacgagtaat ttcattggag
     8341 gctccaagta catcaccggt cagtcctccg aaatttttgg ttgaaaggtg acagattaca
     8401 ccggcgatta gcagtcccgt tcccaaagag atcaatccaa tgtaacctct caaggtcaaa
     8461 actattatga gtgtggatat ggtcgcaaat gcaattttct ttttgtcttt catctccctg
     8521 gtaaagggtg aactaaatcc ttcccaggct gatctgccgc tgccggcctc tatgaccatt
     8581 atgtatttgg ctattacctc tgcagctact atactgatca aaagtttgaa agcagaatta
     8641 taagtagaaa tggctattat caatcctatg atgcagacaa ctaaagatat tgcacctgcg
     8701 gtacctaccg caggatcgga catggcccgt cgttttgcat ccttgcttcc cttcaccatc
     8761 aaaccatctg caaaatctgc aagtgcatca gcatgttgca ttcctgtaat tagcagtatg
     8821 gcgattgtta cgaaaaagcc gactaaataa ttttccagat atatcgaaag accgtaagca
     8881 aaaataccta cgattatgcc tattatagca cctacaatag gaaacaggta catattacga
     8941 gctgttatgc tgatatctgt attacctgac cttggtacag gaatgatcgt caaaaaagat
     9001 aaagctgaaa gaattccatc agaacccaaa gaaaaagttc caccatccaa ttgctgataa
     9061 cgatattatc agaggaaatg ataccagtaa gcaaaaaaca atagttgtta ctttcattat
     9121 cttaatagcc gtcctgcatt tttcgataga caggggttcc aattcgctac ccaaggtgta
     9181 ttcatcaatt ttctccaatt ttatcctcaa agcacctgcc atcgtagaca tcggataccc
     9241 ggcatttaca ctgcatgtgt tatgatgatc agtgcccaag acttgaatgg agtttttcca
     9301 atctgctcca actatccttg ccgataggat cattaacatt gcacacagtc ttgctggaac
     9361 ataatttaat attgtgtcta cttttgcact catccaacct atattgagat gatatttatc
     9421 tttatagcca atcattgaat caagtgtatt aacaacacgg tatccgacgg cgccggaagg
     9481 accgaaaaag gagtaataaa atagcggtgc aacaatcccg tctacaacgc tttcgccaat
     9541 tgattctata gtgcccgata aaatatgttg ggtatccagt gtactagtgt ttctgctaac
     9601 tatgtacgaa agattccttc gcgctccttc aagatcattt ttttccagag ctcggattat
     9661 agcattgaca tgcttttcca ttgtcaatat cgcaatactt gacttaagaa ctatagctgc
     9721 ataaattgcg aacccaatga aactaaaaat tgaataaatg tatagagaaa gtaactggtt
     9781 caaaatacaa gcacccgagg ctaaaaataa tgtgagtacc attccattga gcttctcaat
     9841 cctcgaattt tcggacttaa g
//
LOCUS       DASSIK010000187         2323 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_629850, whole genome shotgun sequence.
ACCESSION   DASSIK010000187 DASSIK010000000
VERSION     DASSIK010000187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2323)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2323)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2323
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_629850"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2256
                     /locus_tag="VFI64_03515"
     CDS             <1..2256
                     /locus_tag="VFI64_03515"
                     /inference="COORDINATES: protein motif:HMM:NF021778.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HET7242389.1"
                     /translation="ANSPTPNFLAPQVDNNSTVTVKLIVTDNSDDTNLDYVNILIRNT
                     NDTIIPPIEGKITLDKIPSQINAGSIFVFSGILDIFGQDDYQNAYIQIKDFNNGSEDI
                     LSFSTSDSDGRYVTEWTAAAREAPYEVYATYEDGYGHSLRSDSQTFRVTETENVIQSD
                     SQSDSQQVISGPYLPIQFNDYKKDGINVYVVAKDEPSVAYVPTAVKAIEYWSELLKQR
                     SHNPGAWNFNIFSSRNFPSAQTDKYPINILVNLEHNEDESECSNWGGFAHTNWLERLF
                     RGHIFTRVFTGCGIQNWPDNEVFRITTHEFGHALGLGHTWHEYDDMMCSSEYLSDFFG
                     FNARLVATCDSPTDIYQDKTKPTEFDARAVLFAYGNDGFQSPNPSLTSGVNNYYVCQP
                     LPCVPPNDTIKPEEPKPPIVKVIKPTSPDLDQNKQQIHKKTTVTTTTIDSITDNPRPH
                     VISDLAKYRIIARIGAFGKGPGQLDQPTSVAIDPNGQRVYVADLDNNRIQVLRHSGNS
                     IAAWGTFGSGKGQFDGPGSISVDDDHKLVFVSDIKNNRIEKFDTQGKYLGEWGTLGMG
                     DGQFDHPGDIALDPDEEKLYVTDIYNNRIQAFYYDGNFIAKWGSFGNGNGQFNRPAGI
                     SFDPKNNLVYVSDTANNRIQVFDSDGNYIKKWGSLGSGNSQFARPDGMYFDPSEKVVY
                     IADRQNHRIQVFDHQGAFVTKWDVSDRVGNLVKPRDVVMDSSGRIYVLIQSKNEIDVF
                     GIPSDIQQTEK"
BASE COUNT          760 a          453 c          478 g          632 t
ORIGIN      
        1 gcaaatagtc ccaccccaaa tttcctagca ccacaagtcg ataataactc tacagttact
       61 gtcaaattaa tagtcaccga taactccgac gacaccaatc tagattacgt taatatcttg
      121 attagaaaca caaatgatac tattatccca ccaattgagg gcaagataac cctagataag
      181 atacctagcc agattaatgc tggcagcatc tttgtatttt caggcatcct agatattttt
      241 ggacaggatg actatcagaa tgcatatatt caaatcaagg attttaacaa cggatcggag
      301 gatattctta gtttcagtac ttcagacagt gatggaagat acgtgaccga atggaccgcg
      361 gccgcaagag aagctccata cgaagtatat gcaacttacg aggatggtta cggtcattct
      421 ttgagaagcg attctcaaac attccgagtt actgaaactg agaatgttat tcaatctgat
      481 tcacaatctg attcacaaca ggttatcagt ggaccttatc tccctataca atttaatgat
      541 tacaagaagg acggaataaa tgtttatgtc gtggcaaagg acgagccttc cgtagcctat
      601 gtgccgacag cagtaaaagc aattgaatat tggtctgaat tacttaagca aagaagtcat
      661 aatcctggcg cttggaattt taatattttt tcatcgagaa attttccctc agctcagaca
      721 gataagtacc ccattaacat actggtaaat ttagagcata atgaagatga atcagaatgc
      781 agcaactggg gaggatttgc gcatacgaat tggcttgagc gactatttag aggccatatt
      841 ttcacaagag tatttacagg atgcgggatc cagaattggc cagataacga agtattccgt
      901 atcacaacgc atgaattcgg gcacgcctta ggcctaggtc atacatggca tgagtacgac
      961 gacatgatgt gcagcagcga atacctaagt gatttttttg gtttcaacgc cagactagta
     1021 gcaacctgtg atagtcctac agacatatat caagacaaga ccaagcctac tgaatttgat
     1081 gcacgtgccg tgttatttgc atatggaaac gatggattcc aatccccaaa tccaagcttg
     1141 acttcgggtg tcaataatta ctatgtttgt caaccccttc catgtgtgcc accaaatgat
     1201 accattaagc ctgaagagcc taaacctcct attgtaaaag ttatcaaacc taccagccct
     1261 gatctcgatc agaacaaaca gcaaatacac aaaaagacta cagttactac tacgacaatc
     1321 gactctataa ctgataaccc gaggcctcat gtcatatcag acctcgccaa atataggata
     1381 atagctcgaa taggagcatt tggtaaaggt ccagggcagc ttgaccaacc gactagtgtt
     1441 gcaattgatc caaacggaca aagagtttac gtggcagact tggataataa caggatacaa
     1501 gtactccgtc atagtggaaa ttcgattgcc gcatggggga cctttggctc tggaaagggt
     1561 caatttgatg gccccggtag tatttcagtt gacgacgatc ataaacttgt ctttgtttca
     1621 gatatcaaaa acaacaggat tgaaaaattt gatactcagg gaaaatatct tggtgaatgg
     1681 ggtactctcg gaatgggcga cggtcagttt gaccatcctg gagatatagc actagatcct
     1741 gatgaagaga aattgtatgt gactgatatt tacaataatc ggattcaagc cttctattac
     1801 gatggtaact ttatcgccaa gtggggctca tttgggaatg ggaatggcca attcaataga
     1861 ccagctggaa ttagttttga tccgaagaat aatttagtct atgtaagtga cactgccaac
     1921 aatcgcatcc aagtattcga tagtgacggc aactatataa aaaaatgggg ctcattagga
     1981 tcaggcaata gtcaatttgc cagaccagat ggaatgtact ttgatccatc agaaaaagta
     2041 gtgtatatag cagatagaca aaaccacaga attcaggtat ttgatcacca aggagcattt
     2101 gtaactaaat gggatgtttc tgacagagtt ggtaatcttg ttaaacctcg agatgtcgta
     2161 atggactctt caggacgaat atacgtgctt attcaaagca aaaatgaaat tgatgtcttt
     2221 ggtattccct ctgatataca gcaaactgaa aaataatgaa aattgtgtga taactactgt
     2281 tattgagtaa ccaattgctt ttcgtagttt atagatagca tat
//
LOCUS       DASSIK010000188         5000 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1422769, whole genome shotgun sequence.
ACCESSION   DASSIK010000188 DASSIK010000000
VERSION     DASSIK010000188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5000)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5000)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5000
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1422769"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            88..1098
                     /locus_tag="VFI64_03520"
     CDS             88..1098
                     /locus_tag="VFI64_03520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthetase"
                     /protein_id="HET7242390.1"
                     /translation="MSCTVAVGGFFGDEGKGKVIAYLSIKDSAAIAVRGGVGANAGHT
                     FVYRDHTYKVRMLPSAILNQSTRLLLGAGVLVTPSILIEEIQKYSTSNRTLVDNQCGI
                     IEEAHILRDSTSDHLKNIVGTTGTGTGPANSDRALRTLKLAREVLELSPYLCDISSIV
                     NEAIDEKRSVLVEGTQGTYLSLYHGGYPYVTSKDVTASGICSDVGIGPKSVDEVLVVF
                     KSFVTRVGAGPLLNEVTPEEAVARGWTEYGSVTGRQRRSSSFNMDLAKKSVKINSATQ
                     LAITKMDVLFPLCAGVREFSKLTDDAKNFIQWIEDETGVKVVLIGTGADIFDIIDLRE
                     IR"
     gene            1351..2025
                     /locus_tag="VFI64_03525"
     CDS             1351..2025
                     /locus_tag="VFI64_03525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242391.1"
                     /translation="MQSRAPCYIEISTIQDFGRLVCAFERTPLLTFSFKRNGEHMLAT
                     QMDFISNIPLIYFVKHPKDGQFLAYRHSGGTEEVIVVDSILNPAYIYSPIISIEKFPK
                     AFSRTARIAKNTGYVPIKLKDLSSLAKVASYRMNYDESPLPLFVFKSKTSHVIGTTVT
                     LGEADSIAYFYYVTSVEEPLSSFIKYSSQKNEQPTFSNNIHEHGSIYIKLVRLASTNP
                     LVTIYE"
     gene            2018..2815
                     /locus_tag="VFI64_03530"
     CDS             2018..2815
                     /locus_tag="VFI64_03530"
                     /inference="COORDINATES: protein motif:HMM:NF012441.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine 5'-phosphate decarboxylase"
                     /protein_id="HET7242392.1"
                     /translation="MNRTTLSYARRIKNCSDAKKSSMVLALDLHYPNDKQIKTVEKIL
                     DRLEAYICAIKVNFHILLSFSREQVKALNELAHSYGLQSIADIKLNDIGSTNFEAVSR
                     LRSMDFDCIIANPVMGKEGLISLVKFAHKLKMGIISVIYMSTPYAHQSYGLNVIVNGK
                     NNLCQTMPLYKIFLNYSKISKVDGLVVGANQAQIIRAVSTISLIPIYSPGVGTQGGDA
                     KKAIKNGSKYIIVGRSVLESSDPVTMISKMRNISNELSSKAHLLRNP"
     gene            complement(2769..3212)
                     /locus_tag="VFI64_03535"
     CDS             complement(2769..3212)
                     /locus_tag="VFI64_03535"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HET7242393.1"
                     /translation="MFDEKSAGIILTTNVLDVHRSKILFLLHSAGHWDFPKGNIEAGE
                     TETQAAARELREETGISCFRFLPRFKYTITYSYKRNKRTISKKVTYFLGTTEVTDILL
                     SCEHIGYCWKDLNKPFDLISYGNTKKSLESVKDFLAGELLKIIHY"
     gene            complement(3240..3389)
                     /locus_tag="VFI64_03540"
     CDS             complement(3240..3389)
                     /locus_tag="VFI64_03540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242394.1"
                     /translation="MSEHEDYDSKTKTWFCSKWISNSEWLTIHGYIPKNQSKVEGINS
                     EDYED"
     gene            complement(3458..4243)
                     /gene="uppS"
                     /locus_tag="VFI64_03545"
     CDS             complement(3458..4243)
                     /gene="uppS"
                     /locus_tag="VFI64_03545"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl diphosphate synthase"
                     /protein_id="HET7242395.1"
                     /translation="MTIINLLKKNSFYGLYERKLESQIKKEPLPNHIAIILDGNRRWA
                     KYHIWATRAGHNSGADKAEELLNWIHDLRIKITTLFVLSTENLTRDETEIDNIYSLLE
                     RKLEKLYSDSRIHERHMKVKGIGNIEVLPSSLRDILSKLEKTTEEYDTMFLNIAIAYG
                     GQQELVDAIKKISGMVKLGSIDVSDIDERLIESCLYTSHLPQSEPDLILRTSGEKRLS
                     GFLIWQSAYSELVFMDVFWPEFRKIDLMRAIRTYQSRLRRYGK"
     gene            complement(4291..>5000)
                     /locus_tag="VFI64_03550"
     CDS             complement(4291..>5000)
                     /locus_tag="VFI64_03550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF373 family protein"
                     /protein_id="HET7242396.1"
                     /translation="IIIRHSRSVEYSYAVLGRYIKMLVYDPRYSKFFLGVPGALLIAS
                     GLATVFGFTREALAIVLSILGAAFVMRAFDIDKALGSLSRPTPSSFIRIFSTFAGIMI
                     ILVAIFNGLSSIPSGLIDSNVAMTKLITNRLVVGSFVHGTITLLWIGIATIFGGMLLS
                     NWFKGSIRIMSDMLRLVVLGLIYIPVVQFTSVLTEGASPFNLISSLLVGLAITLVAAT
                     FLFQYFRNKKGGEELKH"
BASE COUNT         1518 a          990 c          963 g         1529 t
ORIGIN      
        1 agtgctagaa atcatgattt caatttattt actttttttt aataatccct gcttatcctt
       61 atattagttt gtgagaatga ttctatcatg tcttgtactg ttgctgtcgg tggtttcttc
      121 ggtgacgaag gaaagggtaa ggttatagca tatttatcaa ttaaggattc cgctgcaata
      181 gcagtgagag gcggcgtagg cgcaaatgca ggtcatactt ttgtttatcg tgatcatacc
      241 tacaaggtac ggatgctgcc gagtgccatc ttaaatcaat cgacaagatt gcttctggga
      301 gcaggggtgt tggtcacacc tagcatcttg attgaggaaa ttcaaaaata ttcaactagc
      361 aataggacac ttgttgataa tcaatgtggc attattgaag aagcacacat attgagagac
      421 agtacgtcag accatcttaa gaacattgtt ggaacaactg gtactggtac tggtccagcc
      481 aactcagata gagcacttcg tacactaaaa ttggcaaggg aagtactaga attatcaccg
      541 tatctttgcg acatcagcag cattgtaaat gaagccattg atgaaaaaag atcagtgctt
      601 gtagagggaa cgcaaggtac ttatctgtcc ctttatcacg gaggttatcc ctacgttact
      661 tcaaaggatg ttactgcgtc aggtatttgt tctgatgttg ggataggtcc aaagagtgtc
      721 gacgaagtcc ttgtggtctt taagtctttt gtaactagag taggagctgg tccccttcta
      781 aatgaagtta cccctgaaga agcggtagca cgtgggtgga cagagtacgg aagtgtaact
      841 ggtagacaaa ggagatcctc atcctttaat atggatttgg ccaaaaagtc agtgaagata
      901 aatagtgcaa cgcagctagc aattactaaa atggatgttt tatttcctct gtgtgccggc
      961 gtaagagaat tttcaaaact tactgatgac gctaagaatt tcattcaatg gattgaggat
     1021 gaaaccggtg taaaggttgt cctgatagga acgggagctg atatatttga catcatagat
     1081 cttcgcgaga tccgttaaat ccatcctaca ttagccctac tgaaaattgt gagaagatag
     1141 gcgtagggtt aatgtaattg ctatacaatt ttttgcctag ttaactttgt ctgcatgcaa
     1201 taagttaaac cgcaccatgt ccagaatcat tgctaattcg cgtgaataac atctcaaagt
     1261 gaaatatcac ataaactcac ggcgaaaaac tgtttggtct ctgattgtag tcggaggata
     1321 ttaataatct taacaaagaa cgatagactg ttgcaatccc gcgcgccatg ctatatagaa
     1381 atttcaacga ttcaagattt tggaaggtta gtatgtgctt ttgaacggac tccacttctc
     1441 acattttctt ttaaaagaaa cggagagcac atgctcgcca cgcagatgga ttttatcagt
     1501 aacattcccc ttatttactt cgtaaaacat ccaaaggacg gtcaatttct tgcctatagg
     1561 catagcggcg gaacagaaga ggtaatagtg gtggattcca ttttgaatcc agcctacatc
     1621 tattcaccta tcatatctat agaaaaattc cccaaagcgt tttctcgaac tgcaaggata
     1681 gcgaagaata ccggatatgt cccgataaaa ttaaaggatc tctctagcct agcaaaagtt
     1741 gcctcgtaca gaatgaatta tgatgagtcg cccttacctt tatttgtttt caagtcaaag
     1801 acaagtcatg taattggcac aactgttaca cttggtgagg ctgacagtat cgcatatttc
     1861 tattatgtta ctagtgtaga ggagccatta agttcattca taaaatattc tagccagaaa
     1921 aatgagcaac cgaccttttc gaacaatata catgaacacg gctcaatcta cataaagctc
     1981 gtacgacttg caagcactaa tccgttggtg acaatttatg aatagaacaa ctttgtccta
     2041 tgcacgtcgt ataaaaaatt gttcagatgc aaaaaaaagc agcatggttc ttgccctcga
     2101 cttgcactac ccgaatgaca aacaaatcaa aactgttgaa aaaatcttgg atagattaga
     2161 agcatacatt tgtgctatca aagtcaattt ccatattctt ttatcctttt ctagagaaca
     2221 ggtgaaagcg cttaatgaac tagcccattc ctacggattg caatcaattg cagacataaa
     2281 actcaatgac attggttcta ccaacttcga agccgtctcg cgtctcagat ccatggactt
     2341 tgactgcata atagctaatc ccgtaatggg aaaagagggt ctaatctcac tggtaaaatt
     2401 cgcacacaag ttgaaaatgg ggataatctc tgtgatatac atgagtacac cctatgctca
     2461 ccagagttac ggtttgaatg taatagtcaa tgggaaaaac aatctatgcc aaactatgcc
     2521 attatataag atatttctga attattcaaa gataagtaag gttgatggat tagtggttgg
     2581 ggctaatcaa gctcaaatca taagggcagt atcaacaatt tcgctcatcc cgatttattc
     2641 tcctggcgtt ggtactcaag gtggagatgc aaaaaaggct atcaaaaatg gatctaaata
     2701 tataattgtt ggacgttctg tgcttgaatc atctgatcct gttaccatga taagtaaaat
     2761 gcgtaatatt agtaatgaat tatcttcaaa agctcacctg ctaagaaatc cttaactgat
     2821 tctagagact tcttagtatt gccatatgaa ataaggtcaa atggcttgtt aagatccttc
     2881 caacaatatc ctatatgctc acatgatagc aaaatgtccg taacttcagt tgtgccaaga
     2941 aagtatgtta cttttttgga tattgttctt ttattcctct tataagaata tgtgatcgta
     3001 tatttgaacc ttgggaggaa tctgaagcag gatatccctg tttcctctct caattctctt
     3061 gctgcggcct gcgtctctgt ctcgccggct tcaatatttc ctttgggaaa atcccaatgt
     3121 ccagcactgt gaagtaaaaa gagaatttta ctgcggtgta catctaaaac gttagtcgtc
     3181 agaattattc cagcagattt ctcgtcaaac aaattcctca tcaataactt atatgttatc
     3241 tagtcctcat aatcttcgga gttgatgcct tcaactttac tctgattctt tggaatatat
     3301 ccatgaatag taagccactc cgaattcgaa atccatttac tacagaacca tgttttagtt
     3361 tttgaatcat aatcttcatg ttctgacaat gcaatttaat gagctagcct gcagtatttt
     3421 tctgatttgt ttctgccgaa atagatttga gtttagctca ttttccatat cgtctaagac
     3481 ggctttggta cgtcctgatc gccctcatca ggtcaatttt cctaaattct ggccagaata
     3541 catccataaa gactagttcg ctgtatgcac tctgccagat taagaaccct gaaagccttt
     3601 tttcacctga cgttctcaaa atcaaatcag gctctgattg tggaagatgg gaagtgtaaa
     3661 ggcatgactc tatgagtcgt tcatcgatat ctgaaacatc aatgcttcct aacttgacca
     3721 tcccggatat cttttttatg gcatccacca gctcctgttg acctccataa gcgatagcaa
     3781 tattaagaaa catggtatcg tactcttcgg tcgtcttttc taactttgag agtatatccc
     3841 ttaaagacga cggaaggact tcaatattac ctatcccttt gactttcatg tgacgctcat
     3901 gaatacgaga atcactgtac aatttttcga gtttccgttc cagtagtgaa taaatattat
     3961 ctatttcagt ctcgtctcga gttaaattct ctgtcgagag tacaaataga gtagttattt
     4021 ttatccggag atcatgaatc cagttgagaa gttcctctgc tttgtctgca ccactattat
     4081 gtcctgctcg ggtggcccat atatgatatt tcgcccatct tctgttacca tctaggatta
     4141 tagcaatgtg attaggtagc ggctccttct taatttggga ctcgagctta cgttcgtaaa
     4201 gaccgtaaaa tgaatttttc ttcaatagat tgattatggt catatctaat tatgcgtgtc
     4261 caggtagcga agaccattac attagatgac ttaatgcttt aactcttccc cgcctttttt
     4321 atttctaaaa tattggaata agaatgttgc cgcaactaac gtgatagcca atcccactag
     4381 caatgaagat atgagattga aggggcttgc accttctgtc aggactgatg taaattgaac
     4441 tactgggata tagatcaatc ctaataccac taaccttaac atgtctgaca tgattcgaat
     4501 gcttccctta aaccaattgc tcagaagcat tccaccaaat attgttgcga ttccgatcca
     4561 gagaagggtt attgtgccgt gaacaaaact tcccactacg agtctgttag ttattagttt
     4621 agtcatggca acattagaat cgattaaacc agatggaatg ctagatagtc cattaaaaat
     4681 tgcaacaagt atgatcatta ttcctgcaaa agtggaaaag atccgaatga aacttgaagg
     4741 tgtcggccta ctcaaggatc ccaacgcttt gtctatgtca aaagctctca tcacaaacgc
     4801 tgctcccaag atgcttagga cgatcgcaag tgcctctcta gtaaatccaa aaacagtagc
     4861 cagaccgcta gcaataagta atgctcctgg tactcccagg aaaaattttg aatatctggg
     4921 gtcgtagacc aacatcttta tgtaacgtcc caaaacagcg taagaatatt caacacttct
     4981 actatgtcta attatgattc
//
LOCUS       DASSIK010000189         2791 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_530662, whole genome shotgun sequence.
ACCESSION   DASSIK010000189 DASSIK010000000
VERSION     DASSIK010000189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2791)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2791)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2791
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_530662"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2111)
                     /locus_tag="VFI64_03555"
     CDS             complement(<1..2111)
                     /locus_tag="VFI64_03555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase family protein"
                     /protein_id="HET7242397.1"
                     /translation="MASNDASNSVFLSPKSIAIIGASEKSGIGKAIFSNIKSGYGGKI
                     YPVTPSNEFVFGIKAYKSVLDVPDDIDLAVVATPNKIVPKVMEEVGTKKIKGAIIVSA
                     GFKEVDEQGAMLEKEVAAICKKYGTRVIGPNCLGIMSLSKNNMMNATFLKITPKYGGI
                     ALVSQSGAICAATVEDAMAQGIGFSKVISMGNKIDVDENDILDLLCQDPETRVIIMYL
                     EDIHDGRRFMETARKATLQYKKPIVVLKAGRTPEGARAAMSHTGALMGADEVYDALFA
                     QSGIIRVDTMQELFDLATAFSKQPIPKNKNGVVIVSNAGGPAIISTDACSKYGMKMAD
                     ISSSKAAIAKVIPPHGSARNPVDIVGDADYNRFEKVLEEVVSNPNVGSIVTMCTPSAT
                     LDYDELAGTIVKTTAGSGKTSLASLMGLAEGTENKQILSDGGIPHFPYAEPAIRTLKA
                     MYEFSDWLGGPEIRIKQFNVDKEKVRQIFVNVRKTGRTNLLEEEGYEILSAYGFPRPK
                     SFVANTAEDCVKAAREVGYPVVMKIVSKDIIHKSDAGGVKVRLLNDEEVSQSFEEIMS
                     NARKYKQDAEIKGVLVQQMIESARETILGAKHDPLFGPLIMFGLGGIYVEVLKDVIFR
                     LAPIDEREAINMIESIKTAKLLKGVRGQKPSDTNALVDCLLRLSQLVTDFPEIEEFDM
                     NPLLVLEEGKGACAVDVRIGLG"
BASE COUNT          806 a          581 c          480 g          924 t
ORIGIN      
        1 ccaagaccta tcctaacatc cactgcacag gccccctttc cttcttccaa tactaataaa
       61 ggattcatat caaattcttc aatttcagga aagtcagtta ctagttgtga gagacgcagc
      121 aagcagtcta caagtgcgtt ggtatcagat ggtttttgtc ctctaactcc ctttagtaat
      181 ttcgcagttt ttattgattc tatcatgtta attgcttccc gttcatctat gggagctaac
      241 cggaaaataa catccttaag tacttcaaca taaattccac ccagtccgaa cattattaat
      301 ggaccgaata gcggatcatg ttttgcacct aatatcgttt cccttgcaga ttcgatcatc
      361 tgttgaacaa gaacgccttt tatttctgcg tcttgtttgt attttctagc gttactcatt
      421 atttcttcaa aagattgtga tacttcctcg tcatttagaa gtctgacctt aactcctcct
      481 gcatctgatt tgtggattat gtcttttgaa acaattttca taactacggg ataacctact
      541 tctcgagccg cctttacaca atcttctgca gtattggcca caaaactctt gggtcttgga
      601 aatccatagg cagaaagaat ttcatatcct tcttcttcaa gaaggttagt tctaccagtt
      661 tttcttacgt taacaaatat ttgccttact ttttccttgt caacattgaa ttgctttatc
      721 cttatttcgg gtcctcccag ccagtccgaa aattcgtaca ttgcttttag ggttctgata
      781 gcaggctctg cgtaaggaaa gtgaggaatt cctccatcag agagaatttg cttgttttct
      841 gtaccttctg caaggcccat taatgaagct agtgaggttt tacctgaacc agcagtcgtt
      901 ttaactatag tcccagccag ttcatcataa tcaagcgttg cagaaggagt acacatagta
      961 acaattgagc caacgttcgg atttgaaact acctcttcaa gtactttttc gaaccgatta
     1021 taatctgcat cacctacgat atcaacagga tttcttgcgg atccatgtgg aggaatcact
     1081 ttcgcgattg ccgctttaga tgaagatatg tcagccattt tcatgccata ttttgaacaa
     1141 gcatcggtcg atatgatggc aggaccacct gcatttgata caatcaccac tccattcttg
     1201 tttttaggaa taggctgttt tgaaaaagcc gtagcaagat caaataattc ttgcattgta
     1261 tccactcgaa ttataccaga ttgtgcaaaa agtgcatcgt acacttcatc ggcgcccatt
     1321 aatgcaccag tgtgagacat tgccgctcgt gccccctcag gagttcttcc agccttgaga
     1381 acgacaatag gttttttgta ttgtagagtt gcttttctcg ctgtttccat aaagcgcctt
     1441 ccatcatgaa tatcctctag atacatgatg atcacacgtg tttctggatc ttggcagaga
     1501 agatccaaaa tgtcattctc gtcgacatct attttgttac ccatacttat tacttttgag
     1561 aatcctattc cttgggccat ggcatcttcg actgtggcag cacatatagc tccactttgt
     1621 gatactagtg caattcctcc atattttggc gtgatcttta gaaacgtggc attcatcata
     1681 ttatttttag ataaactcat aattccaaga caatttggcc cgatcactct agttccatat
     1741 tttttgcata tggctgccac ctctttttca agcattgctc cctgttcatc aacttcttta
     1801 aaaccagctg aaactataat ggcacctttg atttttttcg taccgacttc ctccatcact
     1861 ttaggaacta tcttattggg agttgcgact actgccaagt cgatatcatc tggcacatca
     1921 aggacacttt tgtacgcctt gatgccaaaa acaaattcat ttgatggagt tactggatat
     1981 atttttccac cataaccact ctttatgttg gagaaaattg cttttcctat accagatttt
     2041 tctgatgccc ctatgatggc aatggacttt ggtgaaagaa agacactgtt agacgcatca
     2101 ttcgatgcca tataaaaaat aacatctcgg taacatagtt ataaatgcat atgatagaag
     2161 gccacaaaaa agatgcaagt tattagtaga tggcgatgga ttgttccaaa tattaagcga
     2221 acaatcctaa ccctgattgt gatgcgctgt attttaattt tacataattt tccaatgaaa
     2281 tctcgaagac gacgttatca ataatctata tgcgtggtaa catatccatc caaaaatatt
     2341 gcatctcaat tatggcaaat aaatgggact cgccatactc agggcatcaa aaatcaagat
     2401 cgacaaggat ggaaaaaatt taaccaaata tttctattat tatccacaaa tgtgaaatta
     2461 tgtgtatcta gtgttatccc aataatgcat gttaagtcgt agccaaaatt aatgttggaa
     2521 taaaggcggt atacaatatt ttataggata taaatcgatc tggacgtttg aagtttaggg
     2581 catattcttg atctaaataa atcattcact agagatccat tttgctatac gcttaatggc
     2641 tctcgtatac aaaacattta tgaatttgga atataataca tcttgtaaat gaataaaggt
     2701 gaaagtgata gcaaaaagaa ggtttttgca ttgacaatac ttggtatatc aatgtcggtt
     2761 gctttgataa gtactctcat cagtgtcatt t
//
LOCUS       DASSIK010000190         3413 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_630042, whole genome shotgun sequence.
ACCESSION   DASSIK010000190 DASSIK010000000
VERSION     DASSIK010000190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3413)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3413)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3413
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_630042"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..406
                     /locus_tag="VFI64_03560"
     CDS             <1..406
                     /locus_tag="VFI64_03560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242398.1"
                     /translation="QIDNLNITLSNINNKSNSSAIGHNLIKYKSHIDILHGDKTIDGS
                     LSNLKYKAQLENSRYEQSLVDISAISKLIGMYEFVTILLIIGAGLGGISEIAKNKLIG
                     YPAFAVGGIGIIILLLVLFLPSIIIGIQISHR"
     gene            1067..1525
                     /locus_tag="VFI64_03565"
     CDS             1067..1525
                     /locus_tag="VFI64_03565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HET7242399.1"
                     /translation="MSEVDKTILKDLLSPIGRKSSLSLANGLGIPLTTIQRRRKRLEK
                     EFLESNYSLNLYKFGWRRVDFFISTKNGKTDDVAIDLFGLNEVTFVGKSIGAHTIDLR
                     AETIVKGNEQLLDLLEKIKGMRGVTDASWSEIVKVMGKKRSIPSNIIDQL"
     gene            complement(1705..3078)
                     /locus_tag="VFI64_03570"
     CDS             complement(1705..3078)
                     /locus_tag="VFI64_03570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HET7242400.1"
                     /translation="MRKFDLIVIGSGSGLDVAKAIAQHGPKVAIVERSKMGGTCLNTG
                     CIPSKLLLHSADVAETIKRAHLFGINTNGFSVDFRRIVERVNTIIDNDSEKIKNALEG
                     LDNPKLISKHCKFIGVKTLSCEGNNEELTAEKILIAAGSRPKIPDIEGLNNTSYLTSD
                     EALRLTKLPNVLTIIGGGYIACELAHFFGSLGTEIHIVQNKDRLIPSEDQDVSKKITE
                     LYFKKYNLHLDCTAQSVSRKGSTYNIKTRNVSGDVVEIVSDQLLIAAGRTPNSDTLDL
                     EKTGVLTNDEGYITTDDYLETNVRGIFALGDVIGRYPFKHSANLEAQYAYHNILNQDE
                     KIAVDYTAMPHAIFCSPQVAGVGYTEQELSRMKVEYKKSYHEYIHTAMGKAILDEAGF
                     VKFMINAKSKEILGCHMLGTEASILIHEVIPIMRNGNGTIGKIVNSIHVHPALSEVVA
                     KAAFELM"
BASE COUNT         1063 a          630 c          611 g         1109 t
ORIGIN      
        1 acaaatagat aacctgaata ttactttaag taatattaat aataaaagta acagttcagc
       61 cataggtcac aacttaatca aatataaatc tcatattgac attctgcatg gcgacaaaac
      121 aatagatggt tcattgtcaa atctaaaata taaagcgcaa cttgaaaata gcagatatga
      181 acaatctttg gttgatattt ctgcaatctc aaagctaata gggatgtatg aatttgtaac
      241 aatcctcctc ataataggag cagggctggg tggcatatcc gaaattgcta aaaacaaatt
      301 aattggatat ccagcatttg ctgttggtgg tattggaata ataatactgt tgctcgtttt
      361 atttttacca tcaattatca taggaatcca aatatcacat cgctaaattt aagcaaacga
      421 gaaacacagg aattcataaa caacttcagg ctccatgttt gtaggagtac ggctgtgatt
      481 tcgattgcca caaatgcaac aaggaattat agaagaggat aattatagaa acaacaaaaa
      541 gaaaacagac attttttgat aatgcggagg ggttagttgt cttatattaa tttatgaatt
      601 tggaagtgag ttctaatagt attttacaaa atcctgtagt gcaagatcgt tcataagttg
      661 gttcataaag cctctcgtaa ttttgcctta tatcctatca gatgttcttc tcctcagcct
      721 tgctctttcg caagatatcc atggttaaca gtgattagtg attcctcttt ggcaagttat
      781 gtaattcttc ttaaggatgt aaggaattca ctgaagttga agaatgcaga tacactaaat
      841 ccatgcaccg atttgaaaaa aggattgata atctacacaa tatgctgtag atgtgttaaa
      901 tatgcgtctg gaagcaaatt tttagctaaa tgtatggtta gaatatgtat tgactatcat
      961 gtcctcaata ttatcgattc tttggataac caacaaattc cttaaatata acttagggac
     1021 gtaatttgct attactaacc ctactggtag atccattaag gatagtttgt ctgaggtaga
     1081 taagactatt ttgaaagacc ttctatcccc cattggacga aaatcctcac tttctctcgc
     1141 aaatggatta gggatccctc tgaccacaat tcagcgtaga cgtaaacggc tagaaaaaga
     1201 atttttggag tcaaattatt ctttgaatct gtataaattt ggctggcggc gtgttgattt
     1261 ctttatctca acaaagaacg ggaagactga tgatgtagcc attgatcttt ttgggttaaa
     1321 tgaagtaacg tttgtgggaa aaagtatcgg ggcccatacg attgatctga gagctgaaac
     1381 aattgttaag ggtaacgaac aacttcttga cctcctagaa aagataaaag gtatgcgtgg
     1441 ggttactgat gccagctgga gtgaaattgt caaagtaatg ggaaagaaga gatccatccc
     1501 aagtaacatc atagatcaac tctagatcat tgcatcagtc cggcttttga ttactactaa
     1561 acagtactac gctgttaaac aagatatgac ccattgttgt ttcttcaaat tccggctgaa
     1621 gtatgcatga gtctctcccg aaaatgaatt ccagtgtaga gcgcctttgt cacctagatg
     1681 ttattaagaa acgacggact cgatctacat tagctcaaat gcagcttttg cgacaacttc
     1741 cgacagtgct ggatgaacat gtatggagtt cacaatttta ccaattgtgc cattcccatt
     1801 tcgcataatg ggtatcactt catgaataag aattgatgct tcggtaccca acatatgaca
     1861 accgagtatt tccttactct ttgcgttgat catgaacttc acgaatcctg cttcatctaa
     1921 tatagcttta cccatcgcgg tatggatata ttcatggtat gattttttat attctacctt
     1981 catacgactc agttcctgtt cagtataacc cacgccagca acttggggag aacagaaaat
     2041 tgcatggggc attgcggtat agtcaacagc tatcttttca tcttgattta ggatattatg
     2101 ataagcgtat tgagcttcca ggttagcact atgtttaaaa ggataacggc caataacatc
     2161 acccaatgca aatattcctc taacatttgt ttcgagataa tcatctgtag tgatgtaccc
     2221 ttcatcattt gttagtacgc cggttttttc tagatcaaga gtatctgagt ttggcgttct
     2281 acctgcagca ataagtaact gatctgaaac tatttctaca acatcaccag atacgtttct
     2341 tgttttgata ttatacgtac taccttttct cgaaacagat tgcgctgtac aatccaaatg
     2401 caagttatac tttttgaaat ataattccgt tatttttttg gaaacatctt ggtcctctga
     2461 tggtattaat ctgtctttgt tttggactat atgaatttct gtccctagtg aaccaaaaaa
     2521 atgtgctaac tcgcatgcta tatatccacc acctattatt gtgagtacat ttggcagttt
     2581 cgtaagccga agggcttcat cgctagtgag atagcttgta ttatttaagc cttcgatatc
     2641 tggaatcttg ggtcttgaac cagcagcaat taatattttt tctgctgtca attcctcatt
     2701 gttaccttca caagatagcg tctttacgcc aatgaatttg caatgtttgg aaataagttt
     2761 gggattatcc aaaccttcga gcgcgttttt tatcttttct gagtcattgt caattattgt
     2821 atttactctt tcaacaatcc ttcgaaaatc gacggaaaat ccatttgtgt taatgccaaa
     2881 aagatgagcc ctcttgatcg tttcagcaac atcagcacta tgtaaaagca attttgatgg
     2941 tatacaaccc gtgttgaggc aagtaccacc cattttactc ctctccacta ttgcaacttt
     3001 agggccatgt tgagctattg cctttgctac gtctagacca gatccgcttc caattactat
     3061 aagatcaaac tttcgcatgt atcttgtatg agtgctaata atataaattt gtgatattaa
     3121 gttcttttct agtagaactt atatcttatt agtacaagtc tacaagaact ccaaatattc
     3181 aatactgtca attagagggt ttccacaact acgaattcta agaaaatata ggattcataa
     3241 tagtattttt gtaacggtag acagaacaaa cataaactgt ggtcgctttt gataacagtt
     3301 atgatagacg taaagtacat cacagaaaac tgacaaccat gtaccgctag ttatcaagtg
     3361 atttttcgac ttccaccctg catctggtca ctacggcggt tataactcct aat
//
LOCUS       DASSIK010000191         2009 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_430615, whole genome shotgun sequence.
ACCESSION   DASSIK010000191 DASSIK010000000
VERSION     DASSIK010000191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2009)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2009)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2009
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_430615"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(239..1126)
                     /locus_tag="VFI64_03575"
     CDS             complement(239..1126)
                     /locus_tag="VFI64_03575"
                     /EC_number="2.5.1.141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008495 - protoheme IX farnesyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0048034 - heme O biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme o synthase"
                     /protein_id="HET7242401.1"
                     /translation="MNVADYIEVSKPRIVIVLVITAITSALAATRFDSTPYLPWDVPL
                     FKLLSLGVAGALASMGSSALNHYYDRDIDAKMPRTAKRPIPSGRVRARNVFAYGVSLC
                     ALSLILSLFTLNLVTTGMIGLGIFFYVIIYTSWLKRNNVSNIVIGGFAGSAASMAGWS
                     VATGSVDTLGFLVGWLVFMWTPPHFWCLAMKTREEYESVNVPMLPVLVGNKKTSQYIL
                     TSTAILLPYSISLYFLGLGLVYLTVAIIAGSLMLFYHYKLTKCPTPSFAWKAYKVTAP
                     YLVIIFIALAFDALFYYRL"
     gene            1433..1636
                     /locus_tag="VFI64_03580"
     CDS             1433..1636
                     /locus_tag="VFI64_03580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242402.1"
                     /translation="MVYKTVNGFLYEMGRRRSAAKPQKKRRTVEGRCPKCTTIVRFNV
                     GGQVGDEIYECTGCMSKFHIDEL"
BASE COUNT          662 a          378 c          390 g          579 t
ORIGIN      
        1 gtgagcagac aatctgttag gatcaattag attctgacga attcctgttt tcatataagt
       61 atctagttaa atttatcgta ccgaatatac tactcgcaac gagatatgct attataaatt
      121 tgaattacga aattaatcaa cacgcgacta gcaggtcttc catttgtctt ggtgctgata
      181 tgttctctgt caaatatgcc tatcaaaatt ctgttagtac taacaaagca aaagcctatc
      241 ataatcgata atagaaaagt gcgtcgaatg ccaacgcaat aaagattatt accagatagg
      301 gggcagtcac tttgtaggcc ttccacgcaa aagatggagt ggggcatttt gttaacttat
      361 aatggtagaa cagcataagc gagcccgcta ttatcgctac tgtcaaatat actaacccca
      421 agccaagaaa atatagggag atagaatacg gcaatagaat cgcagtacta gtaagaatat
      481 attgagaagt ctttttatta cccaccaaaa ctggcagcat tggaacattc acactttcat
      541 attcttctct agtcttcatc gcaagacacc agaaatgcgg tggagtccac atgaacacca
      601 accatccaac tagaaaacct aatgtatcta ctgatccggt tgcgacggac caacctgcca
      661 tagaagctgc gcttccagca aaaccaccga taacaatatt agaaacatta ttccttttga
      721 gccaactggt gtatattatt acatagaaga aaatgcctaa tcctatcatg cccgtcgtaa
      781 caagattcaa tgtgaataat gacaaaatca aggacaaggc acagagtgac acaccatagg
      841 caaacacatt cctcgctcga actcttcctg aaggaatggg tctttttgca gttcttggca
      901 ttttggcatc aatatctcga tcgtaataat gattcaatgc gctagatccc attgatgcta
      961 aggctccggc tactcctaat gataggagct taaatagagg cacatcccaa ggcaggtagg
     1021 gtgtagagtc aaatctagta gcagcgagag cgctagtaat agctgtgata acgagaacga
     1081 tcacgattct gggttttgaa acttcaatat agtctgctac attcacagcc gaagtgatga
     1141 tccgtgtcta gcatttaatt tattcgataa tattccgaat tggctcaaaa ggcaaggcaa
     1201 gtagatggca agtttactaa tgtaattcga ttctaatcct gtatattctt aattcctgct
     1261 atttccacct aactcgcaga gattgaagtt aaagcaaata atcagtatga attttgactt
     1321 caagaatacg atggactata attgattcct tattacatat gcttgtttcc gaactagtgt
     1381 ttatcataga taataaaatg cggactttgc tacagacgtg attagaattc atgtggttta
     1441 taaaacggtg aatggctttc tttatgaaat gggcagaagg agaagcgcag caaagcctca
     1501 gaagaagaga aggactgtag aaggaaggtg ccctaaatgc acaacaattg ttaggttcaa
     1561 cgttggtgga caggtgggcg acgaaattta tgaatgtact ggctgtatgt ccaagtttca
     1621 tatcgacgaa ttgtagtcag agacttgaaa attgacaatc gtcaaattca tgactcatac
     1681 actgccattt cttcaagtat agtctcgtgt gttatacatc atcattcttc tattattgcg
     1741 agcagataac attcagttaa aactggacca acgctatttt tattttatta aattatagta
     1801 acattcaaaa ctcatataga tgattacacg acgcttacga gatagacgcc tacgacatat
     1861 tagtgaaaac tgtgggtttt gaacgcacat ctctttttaa agatgcaaac cttaaccaaa
     1921 tattatgaat gacatgatcg aatatgttga taaggtttat ctttatagta gcggtatgtc
     1981 ctcggaaatg gtggaaaaaa gtatttcgg
//
LOCUS       DASSIK010000192         2871 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1341655, whole genome shotgun sequence.
ACCESSION   DASSIK010000192 DASSIK010000000
VERSION     DASSIK010000192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2871)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2871)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2871
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1341655"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(52..1026)
                     /locus_tag="VFI64_03585"
     CDS             complement(52..1026)
                     /locus_tag="VFI64_03585"
                     /inference="COORDINATES: protein motif:HMM:NF014798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase family protein"
                     /protein_id="HET7242403.1"
                     /translation="MQLSSERKLADMRSAYGDALIELGLNDQNVVCVGADTTDSLKTK
                     KFGDKFPTRLYNVGIAEANLVSIAAGLSIAGKVVFASTYAAFLPGRCLDQIRNTICYP
                     FLNVKLVVSHAGLTVGPDGASHQQIEDISIMRTIPNMRVLVPCDAITVKHLIPLIAKT
                     PGPFYMRLARPSSNLVYDEHVNSFEIGKASVLRDGSDATIIACGLMVTEALKAAEILQ
                     RDYSLCCRVIDMYSIKPIDAQIIYQAAIETGLIITIEEHNIIGGLGSAVTEVASESYP
                     VLVKRMGVSDIFGESARDEEIEELLDKYGLTSNQIVEVVLETRRKTKK"
     gene            complement(1013..2653)
                     /locus_tag="VFI64_03590"
     CDS             complement(1013..2653)
                     /locus_tag="VFI64_03590"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: protein motif:HMM:NF012670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HET7242404.1"
                     /translation="MGFKMRYLELKRKVRDVRMLAIQAIAEAGSGHPGASFSAAEIMG
                     ALYFHKMRHDPSRPLWDDRDYFINSKAHSAPGFYAALAVAGYIDFEEVKTLRKLGSRL
                     QGHPVRYSELQKHHSFPGIEYSGGSEGIGLSVSIGIAIAKKSDGKRNRIYTLIGDGES
                     NEGQIWEAAMSAPKFRLNNLVTILDRNKIQQDGFTEEIMPLDPVRDKWMAFNWNVFEV
                     DGHKIEQLIDALNRVERLEDKPSIIIANTVKGNGIKHMANNPQWHGRAPPRKHTPILL
                     EELQSEVMIAPSIIAGERENYEEKVRKAERGGADLIHLDVMDGKFVPNTTFFANKIRD
                     LRKITSLPFDAHLMIEEPLKHIQDYIEARCDIITIHAEVCNEAEFLDINENLLKAGIS
                     PGVAINPDTKFPSWLYKHLDRIDVVIIMSVNPGFAGQKFIPDSLDKMAEISKELKKHN
                     YHGYIEADGGIDATNLQQVFDAGARIMVAGNAVYGSADINSNIIQLRHKANVALERKL
                     LEIATIKDIRNDWMKTRKHILIPLANELGIEEELHAIK"
BASE COUNT          773 a          640 c          511 g          947 t
ORIGIN      
        1 tatcattata ccgttttatg gattcgatat ttgcagtatc aagaaagatc ttcatttctt
       61 tgtttttctc ctcgtttcaa gaactacttc cacgatctga ttggaagtta aaccgtattt
      121 atccaggagt tcctctattt cctcatcacg tgcagactca ccaaatatat cagagacacc
      181 cattctcttt accagaacag gataactttc tgatgcaact tctgtaaccg cactgccaag
      241 tcctccaatt atattatgtt cctcgatagt tattatgaga ccagtttcta tcgccgcttg
      301 atatatgatt tgagcgtcta ttggtttgat ggaatacatg tctattactc tacaacacag
      361 actgtaatct ctttgaagta tttctgcagc cttgagcgct tctgtaacca taagaccaca
      421 agcaataata gttgcgtcag agccatcccg aagaacactt gcttttccaa tctcaaagga
      481 attcacatgt tcatcataca ccaagttgct tgacggccgt gctaggcgca tataaaaagg
      541 gccgggagtt ttagcaataa gtggtatcaa atgttttacg gttattgcat cacatggtac
      601 tagtactctc atatttggta ttgttctcat aatagatata tcttcaattt gttgatgcga
      661 tgccccatca ggtccgacag tgagtcctgc gtgtgaaacc acgagtttaa cattaagaaa
      721 gggatagcat attgtattgc gaatttggtc aagacatctt ccgggtaaaa aagctgcata
      781 tgtacttgca aacactactt ttcctgcaat agagagacca gccgctatcg atacaagatt
      841 agcctcagct atgccaacat tatataatct tgttggaaat ttatctccaa atttttttgt
      901 tttgagtgaa tcagtagtat cggctcctac acaaacaaca ttctgatcat ttagtccaag
      961 ttcaattaga gcgtcaccat aggcagatct catgtctgca agcttccttt cactacttaa
     1021 ttgcatggag ttcctcctct attcccaact catttgccaa tggaatcaat atatgtttac
     1081 gtgttttcat ccagtcattt cgaatatcct ttatagttgc aatttccaac aattttcttt
     1141 ctagtgcaac atttgcctta tgtcttaatt ggattatatt ggaatttata tctgcagacc
     1201 cgtatactgc attgcctgca accattatcc tagctcccgc gtcaaaaact tgctggaggt
     1261 ttgttgcgtc tataccaccg tccgcttcaa tgtagccatg ataattgtgc tttttcaatt
     1321 ctttagatat ttcggccatt ttgtcaagac tatcggggat gaacttttga cctgcaaatc
     1381 ctggattaac tgacattatt attacaacat ctattctatc aagatgttta tacagccatg
     1441 atggaaattt tgtatccgga tttattgcga cgccaggact aattccagct tttagtagat
     1501 tttcgtttat gtctagaaat tcagcttcat tacagacctc ggcatggatg gttattatgt
     1561 cgcagcgtgc ttcgatgtaa tcttgaatat gtttcagtgg ttcttcgatc attaagtggg
     1621 catcaaaagg cagactcgta atttttcgaa gatcccttat tttgttagca aaaaatgttg
     1681 tatttggaac aaattttcca tccataacat caagatgaat gagatcagca cctccacgtt
     1741 ctgccttacg taccttttct tcataatttt ctcgttctcc cgcaataatc gatggagcga
     1801 tcataacctc actttgcagt tcttctaaca gtataggcgt atgtttcctc ggcggtgccc
     1861 gtccatgcca ttgcgggttg tttgccatat gttttatacc gttccctttc acggtattgg
     1921 ctataataat tgacggtttg tcctctaacc tctccactct gttcaaagca tcaattaact
     1981 gctcaatctt gtgtccgtca acctcaaaaa cattccagtt aaatgccatc catttgtcgc
     2041 gaacagggtc aagtggcatt atttcttcag tgaaaccgtc ttgctgtatc ttgtttctat
     2101 ccaaaattgt gacaagattg ttaagcctga acttcggggc cgacatggca gcttcccaaa
     2161 tctgtccttc atttgattct ccatctccaa tcaacgtata aattcgattt cgcttaccat
     2221 cggatttctt ggcaattgct atgcctatag acacggataa tccgatacct tcagatccac
     2281 ctgaatattc aatacccgga aagctgtgat gtttctgtaa ttctgaatac ctaactggat
     2341 ggccctgaag gcgggaccca agttttctca aagtcttcac ttcttcgaaa tctatgtaac
     2401 cagcgacagc aagggcagca tagaatcctg gagcggaatg tgccttagag tttatgaaat
     2461 agtccctgtc atcccacaat ggtcgagatg ggtcatgcct catcttatgg aagtagaggg
     2521 cacccattat ttcagcagct gaaaatgacg cccccgggtg gccggaacct gcctctgcta
     2581 tagcttggat tgcaagcatc cttacatccc tcacttttct tttgagttct aaatatcgca
     2641 ttttaaatcc cataaaacct gtttaaaccc ctttcaacct aatggttatt ttggggacaa
     2701 tgcttgataa aaagatatac ttgtcataag aggttgcaaa aagattctaa tttctaagca
     2761 gagtttatta gaactcattc agtaatgaac tgactgcatt tctgactcat ttgagcgtat
     2821 tctcagagta tcaatacgca attacacata attaccggcg cgttggcacc g
//
LOCUS       DASSIK010000193         2427 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1217279, whole genome shotgun sequence.
ACCESSION   DASSIK010000193 DASSIK010000000
VERSION     DASSIK010000193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2427)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2427)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2427
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1217279"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(47..1879)
                     /locus_tag="VFI64_03595"
     CDS             complement(47..1879)
                     /locus_tag="VFI64_03595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PINc/VapC family ATPase"
                     /protein_id="HET7242405.1"
                     /translation="MNNTLYVLDTSIIINGEVTRMLESGEISKGDEVVIPIAALDELQ
                     SQASTSKEHGMIGLVEIKRIRELCSTRNINLKFIGSRPELDEIKLAKHGRIDSIIKDV
                     ALQENAVLVTADFVQSMVAEAQGIKCIHVRPPKMSKPLEFEKFFDDKTMSIHLKEGTY
                     PLAKKGVPGNLELVRIDDKKIGYQELSRLVKEISEESRSSESGSIEINRTGATVIQLG
                     KYRIAITRAPFSDGLEATIVKPIAKLTIDDYGLSEKLVARLSEKAEGIIISGPPGSGK
                     STLASSLAEFYVTKRKIVKTFESPRDLQVPEEVTQYAPLEGSFEKAVDILLLVRPDYT
                     IFDEIRRNRDFQVFADMKLAGVGMIGVVHASSPLDAVQRFIGKVELGMIPQIVDTIIF
                     MSGGMVKKVYEIKLTVKVPHGMTEADLARPLVEVRDFESGDVEYEIYTYGEENIVVPV
                     KEIAEKAQTQSAVKKLAEARIKEVVRRFDPNAEIIIISDNRIKLRVHKDVIPRIIGKG
                     GATITELEDLLGIKIDVEMKTPALGREVNFDIVESGSGIVFTVDGDALGKKVDLYIED
                     EFICSNQVGKKSRIKIDKRSENGRRLLNALLTGQSIRIYSNLNS"
     gene            complement(2049..>2427)
                     /locus_tag="VFI64_03600"
     CDS             complement(2049..>2427)
                     /locus_tag="VFI64_03600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="alcohol dehydrogenase"
                     /protein_id="HET7242406.1"
                     /translation="LIPALITREAVGIMAPSGALLEPSLFRGSEGKVIIIGPDAPVGK
                     KISGVVRARSEVFRGALRPFNATVNQELRDVLNSKIRQYLLLCGNIEGNMPNDERIKD
                     VVLNLLSDSYESNNQTIFYPDEA"
BASE COUNT          649 a          559 c          420 g          799 t
ORIGIN      
        1 tatcgtataa agaacattcg ttttagaaga aagtaggaga cgatcattat gagttcaaat
       61 tactataaat tcttatactc tgtccagtaa gcaaggcatt caacaaccgc ctaccatttt
      121 ctgatctttt gtcaatcttg attcttgatt tcttgccaac ttgattactg caaatgaatt
      181 catcctcaat atacaaatca acttttttgc ccaatgcatc accatctact gtgaaaacga
      241 tcccagatcc agactcgacg atatcaaaat tcacctccct acccaaggca ggtgttttca
      301 tttcaacatc aatttttatt cctaacaagt cttccagttc cgtgattgtt gcgccacctt
      361 taccaattat cctaggaata acatccttgt gaactcgaag ttttatccga ttgtctgaaa
      421 taatgattat ctcggcattt ggatcaaatc tccgtactac ttcctttatt cttgcctcgg
      481 ccagcttctt aaccgcactt tgagtctgtg ccttttcagc tatttctttg actggcacta
      541 ctatgttttc ttccccgtat gtgtatatct catattcaac gtcccctgat tcgaagtctc
      601 gcacttcaac aagcggtctt gccagatccg cttcagtcat cccgtgaggg acttttacgg
      661 tcaattttat ttcatagact ttttttacca ttccaccact catgaatatt atcgtatcta
      721 caatctgagg gatcataccc aattcgacct tacctataaa tcgctgtacc gcatccaatg
      781 gagagctggc atgtacaacg ccaatcattc ccactccagc aagtttcata tcagcaaaaa
      841 cctgaaagtc ccgatttctt cgaatttcat caaatatagt ataatccggt ctcacaagca
      901 agaggatatc aacggctttt tcaaagcttc cttcaagagg cgcatattgg gttacttctt
      961 cggggacttg caagtctcta ggggattcaa aagtcttaac tatcttacgt ttagttacgt
     1021 agaattcggc caaactgctg gctagagtac tctttccgga gcccggtggt ccagatatta
     1081 ttattccttc agctttttca gatagtcgag caacaagttt ttcgctcaac ccataatcgt
     1141 caatggtaag ttttgctatt ggtttgacta tagtcgcttc caatccgtcg gaaaatggcg
     1201 ctctagtgat cgcgattcta tatttcccaa gttgaataac cgttgcacca gttctgttga
     1261 tctctataga tcccgattct gaagatcgtg attcttctga aatctccttg acaagtcgtg
     1321 aaagctcttg atagccaatc tttttgtcat caattcgaac taactccaaa ttgccgggta
     1381 cccccttctt tgctagtgga taagtccctt ctttcaaatg aatactcata gtcttgtcat
     1441 cgaaaaattt ttcgaattca aggggcttcg acattttagg tgggcgcacg tgaatacact
     1501 tgataccttg ggcttctgca accattgact gaacaaagtc tgccgtaacc aaaacagcat
     1561 tttcttgaag agctacatcc ttgataattg aatctatacg tccatgtttt gccagtttta
     1621 tttcatcaag ttcaggacgg gatccgatga acttgaggtt tatgtttctg gttgaacata
     1681 gttctctaat tctttttatt tcaacgagtc cgatcattcc gtgctccttg ctagtcgagg
     1741 cttgggactg caactcatct agcgcagcta ttggaatcac gacttcgtct ccctttgaaa
     1801 tttctcccga ttctaacatt ctagtaactt cgccattaat tataatactg gtatctaaga
     1861 cgtagagcgt attgttcata ctcctgttgt attatttaat tctttgatgc cctttgtaat
     1921 gctaaatcgt gccagcttgg aagtaattta tcctaatttg gtagtgatat atgtcgaaaa
     1981 atgttatagg ataatcagtc tgcacgatga ggtctcaata attgcaattt caaaaaataa
     2041 ctaaaattct aagcctcatc aggataaaaa attgtttggt tgttactctc gtaggaatca
     2101 gataatagat tgagcaccac gtcttttatt ctctcgtcgt taggcatatt cccttctatg
     2161 tttccacaca acaggaggta ttgtctaatt ttggaattta ggacatcacg caattcttga
     2221 tttaccgtag cattgaacgg tcttagagcg cctcgaaaga cttcggatct tgctctgact
     2281 acaccagata tcttcttccc tacgggagca tcgggcccaa ttatgattac cttgccctca
     2341 gatcccctaa agagtgaagg ctcaagtaaa gcgcctgatg gagccatgat cccaacagct
     2401 tcccttgtaa tcaatgcagg aataaga
//
LOCUS       DASSIK010000194         2716 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_430995, whole genome shotgun sequence.
ACCESSION   DASSIK010000194 DASSIK010000000
VERSION     DASSIK010000194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2716)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2716)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2716
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_430995"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            215..1066
                     /locus_tag="VFI64_03605"
     CDS             215..1066
                     /locus_tag="VFI64_03605"
                     /inference="COORDINATES: protein motif:HMM:NF024762.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase-like domain-containing protein"
                     /protein_id="HET7242407.1"
                     /translation="MFDWNKSVVKDLASDDVCRLPEYALQLSRIIAFPELDVRNEISK
                     IDQIGLKIRKTLENFSQSRPTQIIERINDQLYRKEKFRPNRDDYYNPSNSFLNVVIRR
                     KIGIPITLSIVYMRVAESLNFKLVPVSFPSHFLIKYILEGESEIIIDPYNEGRIMDDY
                     SLKQLLDQTVPRLSVALTRDFVARASVTKVMIRMLNNLKTSYFECQDIDKAELVNEMI
                     LHIHSNDQYGLRDKGMIMLKRKYQQEALELFNQYIEKYPEADDIDPILELVRKLKKNQ
                     GRETGFI"
     gene            1153..1551
                     /locus_tag="VFI64_03610"
     CDS             1153..1551
                     /locus_tag="VFI64_03610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242408.1"
                     /translation="MTSTIEAELLQQYRKILVCREDLDFTKTYVNVVMIFVVEESRGS
                     AGGRAAGYGSRRISKIMCFSNEHGNYKKIFESCDEQTILLFEIPYNAVALDIKLADGS
                     QLVMQGVIDPEKVESYMRLIKDKSFQSPDE"
     gene            1808..2605
                     /gene="murI"
                     /locus_tag="VFI64_03615"
     CDS             1808..2605
                     /gene="murI"
                     /locus_tag="VFI64_03615"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR00067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008881 - glutamate racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HET7242409.1"
                     /translation="MSNRPIAVFDSGVGSLSIIKELKAEIPTEDLIYFADRENFPYGT
                     KSPEQLNKIMIKSIKSLEPYSPKLIIMASNTPSVQVLDNIRECTSIPIMGVKPPLAEA
                     ARLTKKKHIGIMATESTLRSIQLRQQIAREVPQKIFVTRINASPLIRVIEDGSFFARN
                     EIRQAVLESTFQPEAEDIIDVITLSSTHLPLIKDYLESLFSTIKFVDPAHNTAKDVKK
                     FLKDNGISKKTGTGKMLVFVTGDKIEFQQAIRQMGFKYKVRSISTPF"
BASE COUNT          955 a          461 c          521 g          779 t
ORIGIN      
        1 gcgaaagttt agtgatacag ccatccactt tatttctaac ttttccctat taaggtgagg
       61 ataataatac ttggaaattg aatttcttct tttctataat gtgggcaatc ataagcagca
      121 acattgctaa tctcggttga ctcgggcact gtctaaatga tatattaatg tccatgctga
      181 atgcaattca atgcgtgaga aaatccaaaa agctttgttt gactggaata aaagcgtagt
      241 aaaagacctc gcttctgatg atgtttgcag attgcctgag tatgcattgc aactatcaag
      301 aataattgca ttcccagaat tggacgttag aaatgaaata tcaaagatag atcagattgg
      361 acttaaaatt cgcaagacat tagaaaactt ctctcaatca cgtcctacac aaataatcga
      421 gagaataaac gatcaattgt accgaaagga aaaattcaga cctaatagag atgactatta
      481 caacccttca aatagctttc tcaatgtagt aataaggaga aaaattggaa tcccaatcac
      541 actgtctata gtgtacatgc gtgtagcaga atctctgaat tttaagttgg ttcctgtaag
      601 ttttccgtcc catttcctaa taaaatatat tcttgaagga gagagtgaaa taattattga
      661 tccttataac gaagggcgaa taatggacga ttattcattg aaacagttgt tagatcagac
      721 tgtaccaaga ttgagtgtag cattgacaag agattttgtt gccagggcat cggtgacaaa
      781 ggtcatgatt agaatgctaa ataacttgaa aactagttac tttgaatgtc aagatataga
      841 taaagcggaa cttgttaatg agatgattct gcatatacat agtaacgatc aatacggatt
      901 gcgcgacaag ggaatgatta tgctaaaaag aaaataccag caagaggccc tagaattgtt
      961 caatcaatat attgaaaaat atcctgaggc tgacgatatt gacccgatat tggaactagt
     1021 tcgaaagtta aagaaaaatc aaggtagaga aacaggattc atctaaatcc ccaaaaaaat
     1081 aggaggtatc caatagcaaa acaaaccttc atcagaagag aaatataccg ttttctggca
     1141 tataattaca ttgtgacttc aacaattgag gctgaacttc tccaacaata cagaaaaatt
     1201 ctggtatgtc gagaagatct tgattttacg aaaacatacg tgaatgttgt aatgatattc
     1261 gtggtggaag aatctcgcgg atcggctggc ggtagagccg ctggatatgg ttcaagaagg
     1321 ataagcaaga taatgtgctt tagtaacgag cacggaaatt ataaaaaaat atttgaaagt
     1381 tgcgatgagc aaacaatatt actatttgaa attccgtaca acgcagtcgc tttggacata
     1441 aaattagctg atggtagtca actagtaatg caaggcgtta ttgaccctga aaaagttgaa
     1501 tcgtatatgc gcctgatcaa agataaatcc tttcaatctc cagatgaatg aacaaattca
     1561 aagaactaac ccgattatgg agcgataagt acggcaagat agatctgatc aagtacataa
     1621 ctaccgttac acgctttctc gttaagttaa aacttaagta ttgttgtgct atatctttgt
     1681 tatatgtaat atcttaaagt cctatatctc taatcatgtt tatgtaccga ggactgatca
     1741 cagatacatc gatattgcag ttagtaactc ttttaactag aaggccaaat ttgaaatatg
     1801 gagaaaattg tcaaataggc caattgcagt atttgattca ggggtaggat ctctctcaat
     1861 cattaaagaa ctcaaagcgg agatccctac agaagatcta atctattttg cggatagaga
     1921 aaattttccg tatggcacta agtcacctga acaactgaat aagatcatga taaagtcgat
     1981 aaagtctttg gaaccatata gccctaagct tataataatg gcttcaaata caccgtctgt
     2041 tcaggttctt gacaacatta gagaatgcac ttccattcca attatgggtg ttaaaccacc
     2101 gcttgctgag gcagccagat taacaaaaaa gaagcatata ggtataatgg ctacagaatc
     2161 aacactgagg agtattcagc taagacaaca gattgcaaga gaggttcctc agaaaatatt
     2221 tgtcacgaga ataaatgcat cgcctctgat ccgcgtcata gaagatggtt ctttttttgc
     2281 taggaatgaa attagacaag ccgtgcttga gagtactttc caaccggagg cagaagacat
     2341 tatagatgtt atcacactat ctagtaccca cttgccattg attaaagact atctcgaatc
     2401 cctcttttca acgattaaat ttgttgaccc tgcgcacaat actgcaaaag atgtaaaaaa
     2461 atttctgaaa gataatggaa tttcgaaaaa gactggtaca ggcaagatgc ttgtctttgt
     2521 cacaggcgat aaaattgagt ttcaacaagc aatccgtcaa atgggcttta agtataaagt
     2581 acgatcgatt agcacaccgt tctagtgttt gagatttttt tcggttgttg tagtcaatac
     2641 caatcattat agacagttag acattcatac gaacagtatc tgttaaatac cctcggtaga
     2701 acttttagta tgaatc
//
LOCUS       DASSIK010000195         2359 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_431224, whole genome shotgun sequence.
ACCESSION   DASSIK010000195 DASSIK010000000
VERSION     DASSIK010000195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2359)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2359)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2359
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_431224"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..294)
                     /locus_tag="VFI64_03620"
     CDS             complement(<1..294)
                     /locus_tag="VFI64_03620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-5A"
                     /protein_id="HET7242410.1"
                     /translation="MSKPMDLGSLKVGSYIILDNEACRIVSYDHSKPGKHGSAKARVS
                     AISVFDGSKHNMVAPVSANVEVPLINKRTGQIISISGNTLQIMDLETFEMFETS"
     gene            complement(356..943)
                     /locus_tag="VFI64_03625"
     CDS             complement(356..943)
                     /locus_tag="VFI64_03625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242411.1"
                     /translation="MNVSGYICAPHNKNNESIVETWKKSDNVGSMYFVTATFPSDSLP
                     YFPNHANHYVLAKYMQASPLLSGNSNYLQDKLSFFFNFKSGLFERYHEKLSYVSVYFT
                     KYSCEDSEISEIANSLARRDRVKTARVGDLQFVNGVYIRFTFPYSKNIIVLEVEGDKT
                     HQSDQRYCEKTRMDVARKGISLNNLVSFSVLNKLK"
     gene            complement(1066..1944)
                     /locus_tag="VFI64_03630"
     CDS             complement(1066..1944)
                     /locus_tag="VFI64_03630"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HET7242412.1"
                     /translation="MQTVTIGIPSFNEMNNIEALLNSIMTGDNSGFEILEIIISDDST
                     DATPTIVENFSKFNKKYKIRLFHHDSRRGAANAWNEIISNASGNVIVFYDADVIPASN
                     CTKELISHISNNVGICASNPKPIPGNGMATNGSMFTSKWLESVRVRQLSQYTVMGRGL
                     AVQSNVAKKIKIPRDIIAIDLYLQNVIINLGYEIVYDPSAIVHFRPANTLEDFASQVL
                     RANNGHKQITSIYGKTEHHLNYKIALFEGLRNVVKDPIGAASVFLCCLMIPYYKWRIR
                     DLNSPLWHTALSTKNT"
     gene            2163..>2359
                     /locus_tag="VFI64_03635"
     CDS             2163..>2359
                     /locus_tag="VFI64_03635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242413.1"
                     /translation="MKETEASFSFLKRMAWEAGLRKSNLIMPLIVDESRSNSRYLTTT
                     SMDSLENKVQKVFDLGIKKIML"
BASE COUNT          696 a          472 c          428 g          763 t
ORIGIN      
        1 tgatgtttcg aacatttcga aagtttcaag atccataatc tgaagggtgt taccagaaat
       61 agatattatc tgaccggttc tcttgttgat aaggggaacc tccacattcg ctgataccgg
      121 tgcgaccata ttatgctttg agccatcaaa tactgatatt gctgaaaccc tggctttagc
      181 agaaccatgt ttccccggct tgctatgatc atacgaaact atgcgacatg cttcattgtc
      241 taaaataata tatgaaccga ctttcaaact acccaagtcc atcggtttgc tcaatctaga
      301 tcgaatctca tggattacgc ttcatattta acggttctgt ttctaatatt acaagctatt
      361 ttagcttgtt aaggactgaa aagctcacaa gattgttaag tgagataccc tttcttgcga
      421 catccattcg agttttttcg caatatctct gatcactttg gtgtgtttta tcaccctcaa
      481 cttccaacac gatgatgttc ttcgaatagg gaaatgtaaa ccgtatatat actccgttca
      541 caaattgaag atcaccaacc cgtgccgtct tcacccggtc tctccttgca agtgagttgg
      601 caatctcact aatttccgaa tcctcgcaag aatacttggt aaaatatacc gatacataac
      661 tcaacttttc gtggtatctc tcgaacagtc cggacttaaa attaaagaag aacgatagtt
      721 tatcctggag ataatttgaa ttgcctgaca ataaaggcga tgcctgcata tacttagcaa
      781 gcacataatg atttgcgtgg ttaggaaagt aaggtagaga gtcagaagga aatgtcgcgg
      841 taacaaagta catacttcca acgttgtcag attttttcca agtttctacg attgactcat
      901 tattcttatt atggggagcg caaatatatc cgctaacgtt catctaaata ccccacccca
      961 gagtcctatt tgtacggtat tatttatatt attagtagcc ttgtaaggtc aattcgattc
     1021 ttgcgttcga acatacagca ccgaaagggc gtcgattctt aatgatcaag tattcttcgt
     1081 acttagagct gtatgccaga gaggagaatt aagatctcta atcctccact tgtaataagg
     1141 gatcataaga caacacaaga agactgaagc cgcaccgatt ggatccttta ctacatttcg
     1201 aagaccttca aagagcgcta tcttatagtt cagatgatgc tcagttttcc catagatcga
     1261 cgttatttgc ttgtggccgt tattcgctct taggacttga gaagcgaagt cttccaacgt
     1321 attggctggc ctaaagtgga caattgcact tggatcataa actatttcgt aacctagatt
     1381 gattataaca ttttgcaaat acaaatcaat tgcaatgata tctcgtggaa ttttgatctt
     1441 ctttgccacg ttgctttgaa ctgctagtcc cctacccatt actgtatatt gagatagttg
     1501 tctaactctc acagactcta gccatttgct cgtaaacata gatccattag tggccatccc
     1561 atttcctgga attggttttg gatttgatgc gcagattcct acattgttac ttatatgaga
     1621 gataagttcc tttgtacaat tgcttgcagg aattacgtca gcatcgtaaa agacaataac
     1681 gttaccacta gcgtttgaaa ttatttcgtt ccatgcgttg gcggctcctc ttcgggaatc
     1741 atggtgaaac aatcgtattt tgtatttctt attaaacttt gaaaaatttt ctactatcgt
     1801 cggcgtggca tcagttgaat catcagaaat tattatttct aaaatttcaa aaccgctatt
     1861 atctcctgtc atgatgctgt ttagcagcgc ttcgatgtta ttcatttcgt tgaaagaagg
     1921 tattcctatg gtgacagttt gcattggatg attttgtact atacgtcaat tgctttttaa
     1981 tcattctctt tggtcttacg attttgaatt gaattctaat ttaattaaca gtaagactaa
     2041 gaaaaagtct tgcaaatgct cacaaggcgt taatattaca atccactcgg ttcaaattca
     2101 gcatctatga ctcacctgtg atacataagg tattcatatg aaataacctg atccaaatac
     2161 agttgaaaga aactgaagcg tcattctcgt tcctaaaaag gatggcctgg gaagctggac
     2221 tccgaaaaag taatttgatc atgccattaa ttgtggacga atctcgctcg aattcaagat
     2281 atttgacaac tacttcaatg gactctcttg aaaataaggt tcaaaaagtc tttgatttag
     2341 gaataaaaaa gatcatgct
//
LOCUS       DASSIK010000196         3001 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_235640, whole genome shotgun sequence.
ACCESSION   DASSIK010000196 DASSIK010000000
VERSION     DASSIK010000196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3001)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3001)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3001
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_235640"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            572..874
                     /locus_tag="VFI64_03640"
     CDS             572..874
                     /locus_tag="VFI64_03640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242414.1"
                     /translation="MKNGIGLKIGMAGIALVPLPLCIFNNHNPSKYSHKQRIMQLQFI
                     HPFAIVIGDCDIGSLVFVAYCYIEPYLQLEDSPSNIAKLISSTDLIWERMQESMKS"
     gene            1418..1597
                     /locus_tag="VFI64_03645"
     CDS             1418..1597
                     /locus_tag="VFI64_03645"
                     /inference="COORDINATES: protein motif:HMM:NF018096.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1059 domain-containing protein"
                     /protein_id="HET7242415.1"
                     /translation="MKTLSCREAGFDCDYVVKGETEEEIFKNGAEHATKDHGLKPEDI
                     TPQFKEKLRGLIRNS"
     gene            1840..1962
                     /locus_tag="VFI64_03650"
     CDS             1840..1962
                     /locus_tag="VFI64_03650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242416.1"
                     /translation="MYGSKGFGSLILELVFEIETGYLRVEITPLTSGITLGSKK"
     gene            2405..2530
                     /locus_tag="VFI64_03655"
     CDS             2405..2530
                     /locus_tag="VFI64_03655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242417.1"
                     /translation="MKGDIIKAWWTEVAPSTGPIFSGHQEVSSGMSITYLLGIDE"
BASE COUNT          998 a          559 c          511 g          933 t
ORIGIN      
        1 tttctttgat ttctcatctg catacaacca taatatgacc accggtattc ctatcacaaa
       61 aaagacaata attgtcctta tcgggacccg tattacaaaa agggagatgg caaaacacac
      121 tgttccgatc cccattataa ataaccaacg tcggatgatg tccatgtctc cagactctac
      181 ctgatacata atacctctga ctagtattta ataatcatac tacaaacaaa tcgtgcgatt
      241 gcatgggaca acgtttttaa tgtttttcga aaaatcactc atttcacagc ttaactttct
      301 ccatgctaat aatttgagtt ataaaaagcg ttaaagaatt taagaattgt tcgaaccttt
      361 ctcctcccag ggggagtaat tttggattta tattagttca agtcacacta tgataatcat
      421 aactagcatt cgttaaaact atccctagaa tcttacaaat ccatcataca atagaaccga
      481 atccaatttc ttacttcgat attctaataa tagattcaag gggagatcca aataagactt
      541 gcttttgaaa tagtttacaa ataatttgct tatgaaaaac ggtattggac tcaagattgg
      601 aatggcggga atagccttag ttccattgcc tctatgcatt ttcaataatc acaatccttc
      661 caagtattcg cacaagcaaa ggataatgca acttcaattc atccatcctt ttgccatagt
      721 aataggtgat tgcgatatag ggagtttagt gtttgttgcc tactgctata ttgagcctta
      781 tctgcaactt gaggactccc ccagcaatat agcaaaactc atatcgagta cagacttgat
      841 atgggagagg atgcaggagt ctatgaagag ctaaagcaat aagtttaata tcgaagtatt
      901 aaggaaaaca ggttgtagtg attttgttta gaaaacttga tatccttgag gagaacaata
      961 tgcatgattg acaatagatc tccaatacca aattgggcca cagaaaaaaa gatccttcta
     1021 attttgaacc atgcaacacc agttccaaat ataacctcca ttctgatatt ccttgcattg
     1081 ttactatgta tgagcaaaat gctcaaatac gtatttattt tagggatcgc ttaatttact
     1141 attactttca attcatattt tatataacta gaagagtctg aatgaattaa ttgcaaaaag
     1201 ctcgtgatca ctaaaattaa cgagcagaca gaataactcg gttaaatgct atactatcaa
     1261 ttggaattgg cttcagttac caaaaccttg acaattttgc atctacaaat gaatgagatc
     1321 agatttggga cgaaattaat ggatcttgaa aagtcgtatt ttaattgact taaattttaa
     1381 acgtaacaca attatacaac tctttcgagt atctgtcatg aaaacactat catgccgcga
     1441 agcgggattc gactgtgact acgtagtcaa aggagagaca gaagaagaga tattcaagaa
     1501 tggtgcagaa cacgccacga aagatcatgg tttgaaacca gaagacataa ctccgcaatt
     1561 caaggagaaa ctgagaggcc taattcgtaa ttcttagcag tttattcttt ttaatttttc
     1621 taaaattagc ttgcacagat ctcgaatcga gtccaaattg ctagaatttg atccacaatc
     1681 tcatataaaa tctagttgac aacaatcata ttgaaaaact gcgtcattcg gactgaatcc
     1741 tgaagctgtg aaatagtatt tgtaatgaag atcatgctgg aactacgttg ttactcaatg
     1801 tagaaaataa atgtatagag atagacagtt tcagagcaaa tgtacggatc aaaaggtttt
     1861 ggaagcttaa tattggaact tgtatttgaa attgaaacag gatatcttcg ggtagagata
     1921 actcccttaa cttctggcat tacattaggt tcaaagaaat gagtaaatag atgtctctcc
     1981 aaggtgatgt gtaaggttta catgaagggg atcaacttca attcacaatt ttgattcgtt
     2041 gtccaatgtc actgcgtctt catcattagc caaattggat gaccgtgtca gtttcattgt
     2101 ttaatacgaa agagattcag tctcatgaat cttatggtct gtaaatattg caactggcgc
     2161 atcacattta tcacatcgcc atgaaaataa tctaatctct ctgtcagaag tgtagaaact
     2221 gtctttaatt tcccatgatc gattctttgg attgtatgaa ggtggtctat aacacattct
     2281 gtgtttacaa cgacgcatgc tgacaaccat ctggtgtgct atgataaata atctttgtta
     2341 ctttatagag taagaacaac caggtgcact taaagaatgt atagtaaatt aatcactaaa
     2401 gaatttgaaa ggagacataa ttaaagcatg gtggactgaa gtagcacctt cgacaggtcc
     2461 aattttctct ggtcaccaag aagtttcttc aggcatgagt ataacctatc tattaggaat
     2521 tgatgagtaa cttacttctt aacacaagcg tacaacgaca ctcatacagt cgaccaatcc
     2581 ataagtcctt tctattaagt ccaatcgagc cgactatccc ttaaatggtt gcagccatgt
     2641 tgttattgtg tgtttgagga gttaacagtt gcatttgcac ttagaattac tacggctgca
     2701 aatgatttga taaaatatga ggcatacgag gactctagga aagctgacac cactttttca
     2761 attaatttat gtttttcacg acgcccatca ttaccatcac atcgtcattc caatcttcgc
     2821 attcttccaa attggcctca attttaaatc catcatcctt cataaatggc gccaaaaggt
     2881 gtttttattc agagtatttc caatactcta tttctctccc acaattgtca cacacatatt
     2941 tttcacacaa cactggctta tcgtaagtgg tgtcatcctg aactatctgt tccaagtaaa
     3001 a
//
LOCUS       DASSIK010000197         2603 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_927532, whole genome shotgun sequence.
ACCESSION   DASSIK010000197 DASSIK010000000
VERSION     DASSIK010000197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2603)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2603)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2603
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_927532"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(317..910)
                     /locus_tag="VFI64_03660"
     CDS             complement(317..910)
                     /locus_tag="VFI64_03660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242418.1"
                     /translation="MSKNLNKKYDNKNDKAEQEALKEVEIIAELGPNEKTRKEAEELI
                     ETVENVSTTTLQEAKETMSNPQSNYIAQDSSEIFDSYKQGVLKVTEELSKFQPNYAKS
                     ISNFQQEYLQMTKEFVDKVFAAQRNWAGSSNLTSTSTTFPTSTYAPYTEQFRRQSDEI
                     TAQALSVFNTSNQLAINAINAARENVKLYGKVIDAIT"
     gene            1449..1820
                     /locus_tag="VFI64_03665"
     CDS             1449..1820
                     /locus_tag="VFI64_03665"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HET7242419.1"
                     /translation="MTDDEADLAYLFKEALGTIEGIDVFAFTDPILALEHFKINYRNY
                     KCVITDFRMPSMTGVQFLDQVKKINPYVKRILVSAFDRHDDLFEDCQCIDSFLSKPVK
                     MADLIKEVQQQVKKVETGNVS"
     gene            1989..2492
                     /locus_tag="VFI64_03670"
     CDS             1989..2492
                     /locus_tag="VFI64_03670"
                     /inference="COORDINATES: protein motif:HMM:NF025774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MEDS domain-containing protein"
                     /protein_id="HET7242420.1"
                     /translation="MLYSDIEAMRRVYSSYIKGQIESQPASIILFLPYYDTTDSVREV
                     LESKGIKVRELEKQGSIVIIDIMTVLRNQSLDLPDIKRLRALITKLENQYPNKTIFVI
                     ADMSVFHHLKKANDLLEYEKSLHRDLKVEKWKELCLYNERDFSLMFTDNEAKQLLEYH
                     EDKVIQF"
BASE COUNT          813 a          434 c          487 g          869 t
ORIGIN      
        1 gtggatagat aatcaaaaac tggtgagtca tgtgtgtgct gtaaggattt ggctcaccag
       61 ttacatgacg acgttatagt attatacgct aaggtctcta ttaaggatta aagtagaaat
      121 ttcctgattc ttgcagtgaa aattattctg acgaacctaa gaggacttgg gttattacca
      181 attcagacaa aatgttcttc gacaaaacat atgtcaggtt agtaaaataa aatggaaaac
      241 cttattttcc gaagtattgt agtctttgtg ctgatctgaa gaatgatgac cattgattgg
      301 ctacgttatt attaaactac gtgatggcat cgataacctt tccataaagc ttcacattct
      361 ctcttgctgc gtttattgca tttattgcta gttgatttga tgtgttaaat acactcaatg
      421 cttgtgcagt gatttcgtca gactgtcttc taaattgttc tgtatatggt gcataggtag
      481 aagttggaaa agttgtgcta gttgatgtca agttgctgct tcctgcccaa tttctttgtg
      541 ctgcaaaaac cttgtcaacg aattcttttg tcatttgtag atattcttgt tgaaagtttg
      601 aaattgattt tgcataattt ggttggaatt ttgataactc ttccgtaacc tttaagacgc
      661 cttgcttata tgaatcaaaa atctcagaac tatcttgtgc gatatagttt gattgaggat
      721 ttgacattgt ttcctttgct tcctgtagtg ttgtggttga cacattctct accgtctcta
      781 taagttcctc agcttccttc ctagtttttt cgttcggtcc taactctgct ataatttcaa
      841 cctcttttag agcttcttgc tctgctttat cgtttttatt gtcatatttt ttattcagat
      901 ttttcgacat cattatatga gatgctttat cttattagaa cctatgcatc gagtttgtga
      961 taaattaact atgtcaacta gtcgttagaa cttggattcc tgacatacta tatactgtcg
     1021 tcatggcaca tttcggattg gatggtttgg tttccaacaa agtcaaaata ctgggtccat
     1081 aacgatccca agtcagctaa tttacatgat tattaaaaac cgatatgcag aaattaaccc
     1141 atactggtga ctgtgtttta aagattgtcg atctttctgt atatggcaat tttattaaaa
     1201 aggtttttca gattatgcct acaagaaatt attaattcaa agatagaata ttttgtcatt
     1261 agaaaaggat gtatactcat aactaaatta atcaaaatag cggttaatga cgcgttataa
     1321 ttgcaatttt ttggtttatt tttttagata ctgtttatta gcaacggggt cttagtattt
     1381 attgattgta taccatagga atgataggaa attgatatac tttatctaat ctaaatcagt
     1441 ttattagcgt gacggatgac gaagccgatc ttgcctactt attcaaggaa gcgttgggaa
     1501 ctatcgaagg aattgatgta ttcgccttca ctgatcccat cttggcattg gaacatttca
     1561 agattaatta cagaaattat aaatgcgtta taacggattt cagaatgcca tctatgactg
     1621 gtgttcaatt tctagaccaa gtgaagaaaa tcaatccata tgtaaaacga atcttggtaa
     1681 gtgctttcga tagacatgat gatctattcg aggattgtca atgcatagat agctttttat
     1741 caaaaccggt caaaatggcc gacctaatca aagaagttca gcaacaagtc aagaaagtgg
     1801 aaactgggaa cgtatcgtag ataaagtatc ttacgcttcc tttaatagcg atgaagtata
     1861 ccattgaggc atggaagtaa attcgtatta atcccggtga tcccgttgct caccgaaaga
     1921 acaaccaatt acgcgaagac gaagttttaa ttagacttct agaagttccg ataggtcatc
     1981 attgtctagt gctttactca gacatagaag caatgagaag ggtctattct agttatataa
     2041 aaggccagat agaaagtcaa cccgcttcaa ttattctatt tcttccttac tacgatacta
     2101 cagatagtgt ccgggaagtt ctggagtcta aaggtatcaa agtaagggaa cttgaaaaac
     2161 aaggttctat agttataata gatataatga cagtactacg caatcaatcc cttgaccttc
     2221 ctgacatcaa aaggctgcgg gccctaataa ccaaacttga aaatcaatat ccaaacaaga
     2281 cgatatttgt aatcgcagat atgtctgtct ttcaccattt gaagaaggcg aacgatctat
     2341 tagaatatga aaaatctctg cacagagatc tcaaagtgga gaaatggaag gaattgtgcc
     2401 tctataatga acgtgacttc agccttatgt ttacggataa cgaggccaaa caactcttag
     2461 aatatcatga agataaagtc atccaattct agaaaaaaaa taaactaagt taaggatctg
     2521 ggaagaatat cctcaaaaca ccttgttggt aagccagtaa taatggcttt acctggtcag
     2581 gtggatgaag gtttagtaaa tcc
//
LOCUS       DASSIK010000198         3235 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_631264, whole genome shotgun sequence.
ACCESSION   DASSIK010000198 DASSIK010000000
VERSION     DASSIK010000198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3235)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3235)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3235
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_631264"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..849)
                     /locus_tag="VFI64_03675"
     CDS             complement(<1..849)
                     /locus_tag="VFI64_03675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020266852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit B"
                     /protein_id="HET7242421.1"
                     /translation="MRWKSLSESIGVEYTKVAEIKGPLIIIDGVTKASFDELVEIETN
                     EGDRRLGKVLEVGYGKAVVQVFEGTTGLAITGTKAKFLGKTMTMPVSQELLGRVFDGL
                     GRPNDGLPDPVADKFLDVNGEPMNPESREYPTSFIQTGVSVIDGMLTLVRGQKLPIFS
                     GSGMPHSILAAQIARQATVVGTKEDFAVVFAAIGVQYSEAQYFKRSLEESGALRRSVL
                     FLNLADDPAIERIITPRVALTVAEYLAFDLGMHVLAILTDMTNYAEALREISAAREEV
                     PGRKGYP"
     gene            complement(827..2614)
                     /locus_tag="VFI64_03680"
     CDS             complement(827..2614)
                     /locus_tag="VFI64_03680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit A"
                     /protein_id="HET7242422.1"
                     /translation="MVAKGKIVWVSGPAVKADGMSSAKMYETVGVGDTKLIGEVLRLT
                     GDTAFIQVYESTSGLRPGEPVVGTGQPLSVLLGPGIIGKIYDGIQRPLDDIAQKSGAF
                     IGRGISTTPVPMDKKYKFSPLLKKGDSIAGGSILGTVEETPLLTHSILVPPTHPGGEI
                     TEIVGEGEYDLEHPVAYVKGKNSAKSELKMYHKWPVRRPRPYTDRYDPTVPLITGQRI
                     IDTYFPIAKGGTGAIPGGFGTGKTVTLHQIAKWADSKVVVYIGCGERGNEMTEVLVEF
                     PHLLDPRSGRPLMERTVLVANTSNMPVAAREASIYTGVTIAEYYRDMGFDVVLVADST
                     SRWAEALREMSGRLEEMPAEEGYPSYLASRLAEFYERAGRVRALGSPERAGSVTIVGA
                     VSPSGADFTEPVTTHTIRFIKTFWALDTRLAYSRHYPSINWMQSYSGYLEDVSKWWKE
                     NVSADWYDLRAESYHILQREDTLKEIVRLLGPEALPDEEKLVLEVARMIKIGILQQNS
                     FDKIDTYCSPEKQLKLVRLMVKFYKESQNSLKGGKSLADIRAMSIITSLLKAKFEIPD
                     DQMPKLDELDRRMSEEFKGTLAREVEVTV"
     gene            complement(2619..3191)
                     /locus_tag="VFI64_03685"
     CDS             complement(2619..3191)
                     /locus_tag="VFI64_03685"
                     /inference="COORDINATES: protein motif:HMM:NF014093.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0033178 - proton-transporting two-sector
                     ATPase complex, catalytic domain [Evidence IEA];
                     GO_function: GO:0046961 - proton-transporting ATPase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit E family protein"
                     /protein_id="HET7242423.1"
                     /translation="MTQNDSELTAQIDSSLKEALSNLDASRTKLQAEYDAIIHSAKKQ
                     AENLKRQIIGSSRLTARNRELLLIESAINDIFAKAKQKLGSAYNEKEYRDLLKRMIEE
                     SAQRLGSAEVVIECNKNDLEIVKKILSDLSANKNKVKITLSKKPIDIIGGIRAVSGDG
                     TMTLDNSLDSQIERLKPLIRKELVQLLRGD"
BASE COUNT          805 a          781 c          607 g         1042 t
ORIGIN      
        1 tggataaccc tttcttccag ggacttcctc tctggcagcg ctaatctctc tgagggcttc
       61 agcgtagttt gtcatatcag ttagtatagc caaaacatgc atcccaagat cgaaagccag
      121 gtattctgcc actgtcaatg ccactctagg agtaattatt ctctctattg ctggatcatc
      181 tgctagattc aagaataaga cacttcgcct caaagctcct gactcttcta gactccgctt
      241 aaaatattgg gcctcagaat attgcactcc aatagctgca aatacaaccg caaaatcttc
      301 ctttgttccc acaactgtag cctgtcgtgc gatctgtgca gccaatatgc tatgtggcat
      361 tcccgagcca gagaatatcg gaagtttctg accgcgaacc agcgttaaca tcccatcgat
      421 aaccgaaaca ccggtctgaa tgaatgaagt aggatattct ctgctttcag gattcattgg
      481 ttcgccattt acatcaagaa acttatcggc cactgggtca ggcagaccgt catttggcct
      541 acccagtcca tcaaagaccc tccctaatag ctcttgagat actggcatcg tcattgtttt
      601 cccaaggaat ttggcctttg tgccggttat tgcaagtccg gtggtgcctt cgaagacttg
      661 cacgacggcc tttccgtatc ccacttctaa tactttacct aaccttctat ctccttcatt
      721 cgtttcgatt tcaactagtt cgtcaaatga tgctttagtg acaccatcta ttatgatcaa
      781 tggaccttta atttcagcta ctttagtgta ttctacaccg atcgattcag acagtgactt
      841 ccacctcacg agctagggta cccttaaatt cttctgacat tcgtctgtcc aactcatcta
      901 atttgggcat ctgatcatct ggaatttcaa atttagcctt caacaacgat gtaataatag
      961 acatggcccg aatatctgca agtgactttc ctccttttag agaattttgg gattctttgt
     1021 agaactttac catcaatcgt actaatttta attgcttttc agggctgcaa tatgtgtcga
     1081 ttttatcgaa tgaattttgt tgtagtatcc caatttttat catcctagct acttcgagaa
     1141 ctaatttttc ctcatcgggc aacgcttcag gacctagtag tctgactatc tcctttaaag
     1201 tatcttctct ctgaagtatg tgatacgatt ctgctcgaag gtcataccaa tcagcactga
     1261 cattttcttt ccaccacttg gatacatctt ccaaatatcc tgaataagac tgcatccagt
     1321 ttatagaagg atagtgccta gaataggcaa gtctcgtgtc cagtgcccag aacgtcttta
     1381 tgaaacgaat tgtatgagtg gtaactggtt ctgtaaagtc agctcccgat ggcgagaccg
     1441 ccccgactat ggtaactgaa cccgctcttt ctggagaacc cagagctcta actcgtcctg
     1501 ctctttcata gaattctgcc agtctagacg caaggtacga aggatatcct tcttcggcag
     1561 gcatttcttc caatcgacca gacatctctc tcagggcttc tgcccatctg ctagttgaat
     1621 cggcaactaa tacgacatcg aatcccatat ctctgtagta ctctgcaatc gtaacgccag
     1681 tgtaaattga tgcctctctt gcagctactg gcatgttact agtatttgca accagaacgg
     1741 tcctctccat tagtggtctt ccagagcgtg gatcgagtag gtgggggaac tctacgagta
     1801 cttctgtcat ctcgttcccg cgttctccgc aaccaatgta aactacaacc tttgagtcag
     1861 cccactttgc tatttgatga agggttactg ttttgcctgt tccgaagccc cccggaatag
     1921 ctccagtacc tccttttgct attggaaaat atgtatcaat aatgcgttgg cctgtaatga
     1981 gtggaactgt aggatcgtat ctatcagtat agggccttgg acgtcttact ggccatttat
     2041 gatacatctt tagttcggac tttgcactat ttttaccttt gacatatgct actggatgct
     2101 ctagatcgta ttcgccctcc cctacaattt cagtaatttc tcctcctgga tgagtgggtg
     2161 gtaccaaaat actgtgtgtt aggagaggag tttcttccac tgtaccaaga atggaaccac
     2221 ctgctatcga atctcctttt ttcaataaag gactgaattt gtatttcttg tccataggaa
     2281 ctggagtggt acttatcccc cttccaatga aggcacctga tttttgagct atatcatcca
     2341 gaggtctctg aatgccgtca taaatttttc ctatgatccc aggacctagg aggacggaca
     2401 acggttgacc agtaccaacg acaggttctc ctggtctcaa acctgatgtt gactcataaa
     2461 cttgaataaa tgcggtatca ccagtgagtc taagaacctc accaataagt ttcgtgtcgc
     2521 cgacacctac ggtttcatac atttttgccg atgacattcc atctgccttt acagccgggc
     2581 cgctaaccca aacaattttt cctttagcta ccattccctc aatcgcccct gagcagttgg
     2641 actaattcct tccttattaa aggtttgagc ctttcaattt gagagtccag ggaattatca
     2701 agtgtcattg ttccatcgcc agaaactgcc ctaatcccac caattatgtc tattggcttc
     2761 ttggaaaggg ttatcttcac tttgttttta ttggcagata aatccgatag aattttcttt
     2821 actatctcta aatcgttctt attgcattct ataactacct ctgcggaacc aagtctctgt
     2881 gcgctttctt cgatcattcg ctttaagaga tccctgtact ccttttcatt atatgcggaa
     2941 ccaagttttt gttttgcttt agcaaaaata tcgttaattg ctgattctat cagaagtagt
     3001 tctctatttc ttgcggttag acggcttgat cctattattt gtctctttag gttttctgct
     3061 tgttttttag ctgaatgtat aatcgcatcg tattcggcct gcagttttgt gcgagaagca
     3121 tctagattac ttaacgcctc ttttagagat gagtctattt gagcagttaa ctcagaatca
     3181 ttttgagtca atactttgtc aatagttcgc tctaaggaag atgaactcat tcaaa
//
LOCUS       DASSIK010000199         2508 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1045601, whole genome shotgun sequence.
ACCESSION   DASSIK010000199 DASSIK010000000
VERSION     DASSIK010000199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2508)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2508)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2508
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1045601"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            266..418
                     /locus_tag="VFI64_03690"
     CDS             266..418
                     /locus_tag="VFI64_03690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242424.1"
                     /translation="MNYLAAVNRVSELIKKNTLDSKLRNENYCKTKFGMHATQVIMDA
                     VDSSSR"
     gene            950..1333
                     /locus_tag="VFI64_03695"
     CDS             950..1333
                     /locus_tag="VFI64_03695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242425.1"
                     /translation="MENSNSKPDDTKIKVGLGRYKPIKRPSADIDNPLVKMLDSIVNG
                     LEQSLGKRTYLCGNPDCGTLIIFHKNEQRPLVCHRCGSEIDWEGEYISRIKICPKCNK
                     EYDTNANYCPFHSPPVSLIEKEVEK"
     gene            complement(2041..>2508)
                     /locus_tag="VFI64_03700"
     CDS             complement(2041..>2508)
                     /locus_tag="VFI64_03700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242426.1"
                     /translation="VWYARGGRHDSSIPCEGTSLKGGINVNGVVSWAKEIWHTGGYTD
                     KRAEAQVTNYLIGRWIGWKIVIYNIDNNNAVKMESYLDDKANNKWIKVTDLIDNGGWY
                     SNSPDSVFYSANCGKPKDYVITNGGPIITFRSDNIVWDFKNLSVREIQSPQTD"
BASE COUNT          854 a          452 c          414 g          788 t
ORIGIN      
        1 tttcctaatg tcttgtacaa ggtgcttcta actcatgaca atgtgcgaaa aatgcagcaa
       61 acatgaagaa taccatacat gttcaacttg caatcaacac ttatgtatta actgttttaa
      121 tacggttcat tttggtatca atgctccacg cgctggtaag tcaataatat acaataaatg
      181 cattttttgt ggtgaaatat atggtatcaa tgctaaagtc gacgtttgtg ataaatgtac
      241 gattatactt aattgggtat caggaatgaa ctatctcgct gctgtaaata gagtatcaga
      301 gttaataaag aaaaatacac ttgattcaaa actcagaaat gaaaactatt gtaagacaaa
      361 gtttggaatg catgccacgc aagtaatcat ggacgcagta gatagttcaa gcaggtagta
      421 ataatattcc acacacataa tgaattatca aataaggcaa agcataccag aaattaacta
      481 atgacttcat ttaacttcat gttcttaaat tattaagtga tattctgacc cacgtctatc
      541 acaaccaact cgaaatccat gccttctgcg aaatgtctca tattctctcc acgtactcac
      601 tctacctaca actgaaacgt caattggtcc agactttttg aatttcattt tttgagtcgc
      661 tgttccacct tagggaggaa ctgatcacca aggaatttat ttgtcctatt cttgaaaaag
      721 tgcttttttc ctaaacatca gtaagttcca aagtagtgtc cgacatgttt cttcaccttt
      781 agtgaggggc ataaacgttt caatttatga gtatggaata ttattactgt gtgaagagct
      841 aataaataag agtcaggaca tgggaaacat ataggatctt aattcttcca acttcacttt
      901 gatgttgata ctcatcctta tattcaagag atagtttgca taatagcata tggagaatag
      961 caattcaaag cctgatgata ccaaaatcaa agttggatta ggacgataca aaccaatcaa
     1021 aagaccttca gccgatattg ataatccgct ggttaagatg ttagattcca tagttaatgg
     1081 acttgaacaa tctttgggca aacgcacata tctttgtggc aatcctgatt gtgggacatt
     1141 aataatattt cataagaacg aacaaagacc tctagtatgt catagatgtg gaagcgaaat
     1201 cgattgggaa ggagaatata tatcaagaat caagatatgt cccaaatgta acaaagaata
     1261 tgacactaat gcaaattact gtccgttcca ttctccgcca gtttcattaa tagaaaaaga
     1321 agtagaaaag tagaatttat aggccttttt tctctacaag ctcattatat tgatagggaa
     1381 cgcatacgtc tggcttaaga aaagactctt gttgtcttag ataatatgta acttccttgc
     1441 acatgacttg tgataataat ttctacgata tccacaactt actaggacat cttttttgct
     1501 aaagagtaaa ttacaaaaat ggcacttacc gtcttgtctt ctcttgatga tacagaggat
     1561 ccgacgcatt atgatcggtc taactttaga aaatactata ggttgaacca aatgatactt
     1621 agttacttgt cctcgtgtgg aagtatttat ttttttcgta gagacgtagc attggaaagc
     1681 aaatacacat gaaaaaaatt gtatgaaatg tttctaaatg agagaataac atcttgtggt
     1741 atgtgccatt tttaagtaaa aatttaaccg aaataatcgt caagatactc cgcaatgctc
     1801 tattaggtat gatcagaacc attgagatct gattgaagaa tcttaaatcc aagattggat
     1861 agaagtattt ccacaactaa tcgctaagat agagcagtaa atgtattact ggaagaatga
     1921 aactttgtaa gaaaaagatg gtgatgaaat tctatccaaa aatgagagta atattgcaga
     1981 atataatcca tcattttgtt caatgcaatg attaatgata ttgtagacca gactctacga
     2041 ctaatcagtt tgtggggatt gaatttctct aacactcaaa ttcttaaaat cccatactat
     2101 attatcagat ctaaatgtga ttatcggacc tccatttgta attacataat ctttaggttt
     2161 accgcaattt gcactataaa atactgaatc tggactatta gagtaccaac caccgttatc
     2221 tatcaaatct gttaccttaa tccatttatt gttcgccttg tcatcgagat acgactccat
     2281 tttgacggca ttattgttgt caatattata aattacaatc ttccatccaa tccaacgacc
     2341 aataaggtaa ttcgtaactt gggcttccgc tcgtttatca gtataaccac cggtatgcca
     2401 tatctccttt gcccaagaga caactccatt aacattgatt ccacctttca gagaagtacc
     2461 ttcacatgga atagaactat catgccttcc accccttgca taccatac
//
LOCUS       DASSIK010000200         8811 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_632170, whole genome shotgun sequence.
ACCESSION   DASSIK010000200 DASSIK010000000
VERSION     DASSIK010000200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 8811)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8811)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8811
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_632170"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..657
                     /locus_tag="VFI64_03705"
     CDS             <1..657
                     /locus_tag="VFI64_03705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242427.1"
                     /translation="AKSISSQPRYLDVGCGYGDFLQKVREFIPNAIGIENDNIFYNFN
                     MIKPDYIYFQDASLNIDDEFDVIFVGWMDPGIDFRKNVADKTEVVITTLDEGISLAAE
                     YEDQGFQKIAEWRTPSWEDMNIELMNKYYTRISKDVYRQLSDLRGAHNLWYVYSRNPQ
                     NFQRIKTSLRGCLGQELSITSNYNFESVMDDCGFGYLEQLSGVGRKIKLNKLWEVIFT
                     "
     gene            complement(713..1645)
                     /locus_tag="VFI64_03710"
     CDS             complement(713..1645)
                     /locus_tag="VFI64_03710"
                     /inference="COORDINATES: protein motif:HMM:NF012933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0008534 - oxidized purine nucleobase
                     lesion DNA N-glycosylase activity [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA glycosylase"
                     /protein_id="HET7242428.1"
                     /translation="MTHTEDASCYLKSLNSLNPEITVNSGQMFLWENYKNSWYGVYKS
                     HILKFSLDHKNSGKGTYDHLYFDSLPELDNWQQLVFRLDDDINYISSCLTNDNMISQL
                     FKKYSGLWLMRQDPFQCMISFACSSNTNIPMIRRMLKNLCRKFGIKREIDQKKFFTFP
                     TTKSLAKASINELCSCGIGYRAKTIKSLTEKIIIGTLNIEELSRCKYDEAKEKLLGIY
                     GIGNKLADCILLFSLEKTEAFPIDVWIARSIYSYYRALLNQESFKLDFKSTKLSPNKY
                     NLLSKIMRQHFGKYAGYAQQYLYYHMRCSANKKW"
     gene            complement(1801..3066)
                     /locus_tag="VFI64_03715"
     CDS             complement(1801..3066)
                     /locus_tag="VFI64_03715"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HET7242429.1"
                     /translation="MKISVLGAGKEVGRSAFLVTCENTNILLDYGVLLKREPSFPLHV
                     RPKDINAVVLSHAHLDHSGYIPSLFLSSATDISVLGTLPTFELSQLLIEDMIKISGLY
                     LPFEYLDLINMINHCKNLQYREKHSIGDVDITLHESGHVIGGASIMMEYQGKRIFYTG
                     DINTRGSKLLRPADLDLPNVDLLIIESTYSQTEQMPREESERRLLDFAYEVVDRGGTL
                     FIPAFSVERAQEIACVLKTHQFKHKVAMDGMALKVNEIMLKYTSYLRDPEIFKKAVLE
                     AEWVHGWQRRKQLVREPGVIISPAGMLVGGSAVFYLQEIAKDPKNGVAMVSYQGEGTP
                     GRALLDKKIITYDGKMRKCLAEVNRFEFSGHNSRSELFEILDKIKGNPEVLAIHGDGN
                     SCTRFAEEIQDKYGFKAKAPSQGDVIEIS"
     gene            3139..3711
                     /locus_tag="VFI64_03720"
     CDS             3139..3711
                     /locus_tag="VFI64_03720"
                     /inference="COORDINATES: protein motif:HMM:NF024635.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase family protein"
                     /protein_id="HET7242430.1"
                     /translation="MNKIAITGNPGVGKHTIGTAIAKKLNYHVIDLNKFVIMNNAIIV
                     SKKQESFDVDIRRASLALKTELRKNNDIIIIGHLAPYLLRSNQVDFVAILRRSPSYLL
                     QTYKKRNYTISKIKENIAAEVLGVCSYDAIKQFGKSKIAEFDTSRKSPSEIVRCVIDA
                     LNNDSKRSFGVVDWLSTIENEPHLLKLILD"
     gene            3851..5977
                     /locus_tag="VFI64_03725"
     CDS             3851..5977
                     /locus_tag="VFI64_03725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase/oxoprolinase family protein"
                     /protein_id="HET7242431.1"
                     /translation="MTRRIRIGVDVGGTFTKAVAIDMMNGAIVGKVTVPTSHSSSGGV
                     SNGIVLALTDLIKNQHIETSEIELISHSTTQAVNALLEGDTSKVGIIGMGVGLEKSNV
                     IKRTSVTDIELAPNKYLKTCYRFLDTSKFLEKHEVITAINELKSEGADVLVVSEAYGV
                     DDPSNELFVMKMSDIPATAGHELTGIYGLEIRTLTAAINAGILIKSINTTKFVESAMQ
                     QQGITAPLLIMKGDGGITDMITFKTKPILTILSGPAASVAGALLHLRVFNGIFVEVGG
                     TSTNVCIIRNGRPEIKYVTIMNHPTCIKSLDVRVVGVAGGSLVRWSGKKITDVGPRSA
                     HIAGLKYSCYADPQELEGGQIITFMPKEGDPIDYIAIESSGAKRFAITNTCAANALGL
                     IPENDYARGNQESARLALSILAQRIGITMEQVAESILDLSGKKVLEVINVLSKNYKLK
                     NDRTVLIGGGGAASVLVPYIARKANREYKIAGHAEVISSIGVATAMIREEREKTVNNP
                     TAEETSSLMKEVEKVAISKGALPESLTIQSEYISDRSLLRVTAYGNISLDIGTANAKE
                     IDDEEARVLACELFGINDGIRRIFDMKNYYVFACEIHKKKLFLKSRRQSILVLDKYGR
                     IRLSIENGMIYSGPAQHVMNKFEIFFNECRDGRKSNDLAPQIHILDGTKIIDFSSLTS
                     SEQVLKAVKKELIKSGTNEVTVILKI"
     gene            complement(6024..6929)
                     /gene="prs"
                     /locus_tag="VFI64_03730"
     CDS             complement(6024..6929)
                     /gene="prs"
                     /locus_tag="VFI64_03730"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004749 - ribose phosphate diphosphokinase
                     activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate diphosphokinase"
                     /protein_id="HET7242432.1"
                     /translation="MQNDTVIISSIDNLELAAKIAHNLDVQLVKADLRIFSDGESKIR
                     MDSVSNKKCIIVHSTYPVPDQRLMQLFMMIYKCNKDRAKHICALIPYMAYTRQDKAFI
                     DGEVISVDLIGNILESIGINQVVTIDIHNQKVLSNFSFRTSDISAIPILACYVSDHLK
                     LHNPLIVSPDKGGTNRAAELAKLLNTDMISLVKKRDRYTGEIQTKFEGSKSIRNRDTI
                     IVDDMISTGNSIINAAIVLKELGVQNIFVLCTHALLLENAIEKLRDAGIKDIIATNSI
                     PNVFARVDLAAMLSQYLLEQIKSSP"
     gene            complement(7021..7932)
                     /locus_tag="VFI64_03735"
     CDS             complement(7021..7932)
                     /locus_tag="VFI64_03735"
                     /EC_number="3.1.26.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016891 - RNA endonuclease activity,
                     producing 5'-phosphomonoesters [Evidence IEA];
                     GO_process: GO:0042780 - tRNA 3'-end processing [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Z"
                     /protein_id="HET7242433.1"
                     /translation="MKIIFLGTSAAIPTSSRGLSSIAIQRGGELLLFDAGEGMQRNFM
                     RARLGINRKMKLFVTHMHADHCVGILGLLQTMSLLGRTKKLHIYGEPKLLEFINQNIR
                     IINFGLSFDLDIHVIYKEGLVVKESDYQVSCCRSLHSILSYSFCIEEFDRPGKFNIEK
                     AISLGIPKGELFGKLQNNEDILFNGMNIKSEQIVGPKRKARKIGISGDTRPTTELERF
                     FSDSDILIFESTYSQNNHENAVRTFHSTAIEAASLAKASRARTLFLTHFSSRYQDPSV
                     LLSEAKSIHDNVELAEDLKIINVPYTQ"
     gene            8110..8286
                     /locus_tag="VFI64_03740"
     CDS             8110..8286
                     /locus_tag="VFI64_03740"
                     /inference="COORDINATES: protein motif:HMM:NF019374.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc finger domain-containing protein"
                     /protein_id="HET7242434.1"
                     /translation="MPNCNACKKEIRPSELSESFMCPKCKDRLIWRCEECKGVSRKYS
                     CGNCGYSDNKAGMT"
     gene            complement(8402..>8811)
                     /locus_tag="VFI64_03745"
     CDS             complement(8402..>8811)
                     /locus_tag="VFI64_03745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242435.1"
                     /translation="KSGPKALQLEGVPFYELTETGILVASSIEELGDYRMKLLESYIS
                     SLNVNTTEELIMKNGLILLLKVTPHLASKIISEYVYAYSTGIIDTATPIDIRRMRPVI
                     GDQILIEKELIEAYSIITNEQQELMRNFFKVMT"
BASE COUNT         2843 a         1423 c         1641 g         2904 t
ORIGIN      
        1 gcaaagtcga tatcatcaca accaagatat ctggatgtcg gatgtggata tggtgatttt
       61 ttacagaagg ttagagaatt tatacccaat gcaattggta ttgaaaatga taatatcttt
      121 tacaatttta atatgatcaa acctgattat atttactttc aagatgcatc attgaatata
      181 gatgatgaat ttgatgttat ctttgtagga tggatggatc ctggaataga ctttagaaaa
      241 aatgttgcgg ataagacaga agtggtaata actactcttg atgaaggaat tagtctagct
      301 gcagaatatg aagaccaggg atttcagaaa atagcagaat ggagaactcc atcatgggag
      361 gatatgaata tagagttaat gaacaaatat tatacaagaa tttctaagga tgtatatagg
      421 cagctttctg atctaagagg tgcacacaat ctttggtatg tttatagccg aaatccacag
      481 aattttcaaa ggataaaaac atctctaaga ggttgcttag gacaggaact ttcaataact
      541 tcaaactata attttgaatc tgtaatggat gattgtggat ttggatactt ggagcaatta
      601 tctggtgtag gacgcaaaat caaattaaat aaattgtggg aagtcatatt tacataattg
      661 attgaccgta taatgaacta tagtttgctg tagcagagca tgattattga atttaccatt
      721 ttttatttgc gctacaccgc atgtgataat acagatattg ttgtgcatat ccagcatatt
      781 ttccaaaatg ttgtctcata atctttgaga gtagattgta tttattaggg cttagttttg
      841 tagatttaaa atcaagttta aaactctctt gatttaataa tgctctgtag tatgagtata
      901 ttgatctggc tatccacaca tctatcggaa acgcttcagt cttttccaat gaaaataaca
      961 gaatacaatc tgcaagcttg tttcctattc cataaatacc taataatttt tctttagcct
     1021 catcatattt acaccggctt aattcttcaa tattcaatgt accgataatt attttttcgg
     1081 ttagggattt tattgttttt gctctatatc ctattccaca ggaacatagt tcattgatag
     1141 aagctttagc tagactttta gttgtaggaa atgtaaaaaa tttcttttgg tctatttctc
     1201 tttttatacc aaattttcta cacagattct ttaacattcg ccggatcatg ggtatgttag
     1261 tattactaga acatgcaaaa gagatcatgc attgaaaagg atcttgacgc attagccata
     1321 ggccggaata ttttttaaat aattgtgata tcatattgtc gttggtaagg caagaagaaa
     1381 tgtagttaat atcatcatct aatctaaaaa caagctgttg ccaattatcc aattcaggaa
     1441 gggaatcaaa atacagatga tcataagtac ctttaccaga atttttatga tctaaagaaa
     1501 atttcagaat atgacttttg tatacgccat accatgagtt tttatagttt tcccataaaa
     1561 acatctgtcc actattaact gtaatctctg gattcaggct attgagagat tttaaatagc
     1621 aagaagcatc ttcggtgtga gtcaattatt atctacaatg tcatgcatca atttatttta
     1681 gtctactaag cataaatcca taaatccgta cattctttga ttgtagattg aagagtggtg
     1741 taaaagcctt aaaggtatca ccagagcttg gcatctaatg atgaaatacc actaccataa
     1801 ttaactgatc tctatcacgt caccttgtga gggagctttt gctttaaaac catatttatc
     1861 ttggatctct tctgcaaatc ttgtgcatga atttccgtcc ccatgaatag caagaacttc
     1921 tggattccct tttatcttgt ctaatatttc aaatagttca ctcctactat tatgtcctga
     1981 aaattcgaaa cgatttactt cagctaaaca ttttctcatc tttccatcat acgtgattat
     2041 cttcttatcg agaagggcac ggccaggtgt accttcacct tgatatgaga ccatggcaac
     2101 accgtttttg ggatctttag caatttcttg caaatagaaa actgcagaac cgcccacaag
     2161 cattcctgcc ggagaaataa ttactccagg ttctcttacc aattgttttc ttctttgcca
     2221 tccatgaacc cactcggctt ccaaaactgc ctttttgaat atttctgggt cgcgtaagta
     2281 tgatgtgtat tttaacataa tctcatttac ttttagagcc attccatcca tggctacttt
     2341 atgcttgaat tgatgagtct taagaacgca tgcaatttct tgagctcttt ctactgaaaa
     2401 tgcaggaata aaaagtgtcc ctcctctatc aacaacttcg taagcaaaat caagaagacg
     2461 tctttcggac tcttctcggg gcatttgttc agtttgggaa tatgtacttt ctataattaa
     2521 taaatcaacg tttggaagat cgagatccgc gggtctaagt aattttgatc ctcttgtatt
     2581 aatatcacct gtatagaaaa tgcgtttgcc ctgatactcc atcattattg atgcgccacc
     2641 tattacatgc ccagattcat gaagggtaat atcgacatca ccgatagaat gtttttctct
     2701 atactgaaga tttttacaat gatttatcat gttaattaga tctaagtatt caaaaggaag
     2761 gtataaaccg gatattttaa tcatatcttc gatcaaaagt tgagatagct caaatgtggg
     2821 tagagtgcct aggactgaaa tatcggtcgc acttgacaaa aatagggatg gaatgtatcc
     2881 agaatgatct agatgagcgt gactaaggac tactgcattt atgtcttttg gccgcacatg
     2941 caaagggaag gatggttctc tttttagaag cactccgtaa tctagcaaaa tattggtatt
     3001 ctcgcatgtt actaaaaatg ccgaacgtcc tacttccttt ccggctccta aaactgatat
     3061 tttcatgtac tgaaacctgt tctaccatag aaattataag tcttacttgt acaattcgat
     3121 tgaaaatata gcttgaaagt gaacaagatt gccattacag ggaatcctgg tgtaggaaag
     3181 catactatag gtactgctat agctaagaaa ttgaattatc atgtaatcga tttgaataaa
     3241 tttgtgatca tgaataacgc tatcattgtg tcgaaaaaac aggaatcttt tgatgtggat
     3301 attagaagag cttctcttgc acttaaaaca gagttgagga aaaacaacga tattattatc
     3361 atagggcatc ttgctcctta tctattacga tcgaatcagg ttgattttgt agcaatttta
     3421 cgtagatctc ccagctatct tttacagaca tataaaaaaa ggaactatac gatatcaaaa
     3481 attaaagaaa atatagctgc tgaggttctt ggtgtatgtt catatgatgc aataaagcag
     3541 tttggcaaat caaagattgc ggaatttgac actagcagaa agtccccttc tgaaatagtt
     3601 agatgtgtta tagatgcttt aaataatgac tcaaaaagaa gttttggagt tgtagactgg
     3661 ttatctacaa tagaaaatga gccacatttg ctaaagttaa ttttagattg atgtatcgat
     3721 atatcagtta tattatatca ataatccata tcaataatac caagataagt atctggaaca
     3781 gtgttcagac atccaatagc atttaaatat tgtgtcaata tcaggaaaaa tatttacatg
     3841 gttttcatcc atgactagaa gaataagaat aggtgttgat gtcggaggaa catttaccaa
     3901 ggctgttgca atagatatga tgaatggagc aatagtgggc aaggtaactg ttcctacttc
     3961 tcattcttcc tctggtggag tatcaaatgg aattgtatta gccttaactg atttgattaa
     4021 aaatcaacat atagagacat cagaaattga gcttatttct cacagtacga cgcaggcagt
     4081 taatgcctta ttggaaggtg atacatcaaa agtaggtata attggtatgg gtgtaggtct
     4141 tgagaaaagt aatgtgataa aacgtacttc agtgacggat atagagcttg ctccaaataa
     4201 atatcttaaa acttgttata ggtttctaga tacatcaaaa tttttggaga aacacgaagt
     4261 tattactgct ataaatgaat tgaagagtga gggtgcagat gttttagttg ttagtgaagc
     4321 atatggtgtt gatgatccca gtaatgaatt gtttgttatg aaaatgtctg atattccagc
     4381 aacagcagga catgaattaa caggaatcta tggtttggag ataagaacac taaccgcagc
     4441 tataaatgct ggtattttga taaaatcaat taatacgaca aagttcgtcg agtctgcaat
     4501 gcagcaacaa ggtattacag ctccgttact aattatgaag ggtgatggtg gaataacaga
     4561 catgataact tttaaaacta agccaatttt aacgattctg tctggacctg ctgcaagcgt
     4621 agctggtgca cttctccatc ttagagtgtt taatggtatc tttgtagaag ttggaggtac
     4681 ttctacgaat gtgtgtataa taaggaatgg aaggccagaa ataaagtacg tcacgataat
     4741 gaatcatcct acatgtatta agtctcttga tgtcagagtt gttggtgtag caggaggctc
     4801 tcttgtaagg tggtccggga aaaaaataac agatgtcggt ccaagatctg cgcatattgc
     4861 tggtttaaaa tattcatgct acgcggatcc tcaagagctt gaaggggggc aaatcataac
     4921 atttatgcct aaagaagggg atcctattga ctatattgct atagaaagta gcggggccaa
     4981 aagatttgct attactaata cttgtgctgc aaatgcattg ggtctgattc ctgaaaatga
     5041 ttatgcaaga ggaaatcaag aatcagcgag acttgctcta tcaatattag cacaaagaat
     5101 agggattacg atggagcaag ttgcagaaag tattcttgat ctctccggga aaaaagtttt
     5161 ggaagttata aatgtcctta gcaaaaacta taaactgaaa aatgatcgca ctgtattgat
     5221 cggaggtggt ggagctgcct ctgtgctagt tccttatatt gcaagaaaag cgaacaggga
     5281 gtacaagatc gcaggacacg cagaagtcat ttcttcgatc ggtgtggcaa cggcgatgat
     5341 aagggaagag cgtgagaaga cggttaataa tccaacagca gaagaaactt cttctttgat
     5401 gaaagaagtg gaaaaagtag ctatttcaaa aggagctctt ccagaatcac ttacaattca
     5461 atctgaatac attagtgatc gctcactact ccgtgttact gcatatggta atataagctt
     5521 agatatcggt acagctaatg caaaagaaat agatgacgaa gaggcaagag tacttgcatg
     5581 tgaattattt ggaattaatg acggtattcg ccgtatcttt gatatgaaaa actactatgt
     5641 ttttgcctgt gaaattcata aaaagaaatt atttctaaaa tcacgtagac aatcaatatt
     5701 agtacttgat aaatatggaa ggattaggtt atctattgaa aatgggatga tttatagcgg
     5761 tcctgcacag catgttatga acaaatttga gatattcttt aacgaatgca gagatggacg
     5821 gaaatcaaac gatcttgcgc cacaaattca tatactagat ggaacaaaaa ttatcgattt
     5881 ttcaagtctt acttcttccg aacaggttct aaaagccgta aaaaaagagt taataaaatc
     5941 aggtaccaat gaagttacag ttatactcaa aatttagtgt aaatttattt ttttactaaa
     6001 gttgagaatg ctcatcagga gcatcatgga gatgatttaa tttgttcaag caaatattga
     6061 gataacatgg ctgcaaggtc gactcttgca aagacatttg gtatagagtt agtggctatt
     6121 atgtccttaa ttcctgcatc tcttaatttc tcgattgcat tttcgagtag cagagcatga
     6181 gtacataata caaatatatt ttgaacgcca agttctttca acactattgc ggcatttatt
     6241 atactattac ctgtacttat catatcatca actataattg tgtctctgtt gcgaatagat
     6301 ttacttcctt caaattttgt ttggatctct ccggtatatc tatctcgttt tttgactaaa
     6361 gaaatcatat cggtattaag aagttttgct agttctgcag ctctattagt gcctccttta
     6421 tcaggagata ctataagtgg attatggagt tttaaatggt ctgatacata acacgccaat
     6481 attggaatgg cactaatatc gctggtacga aaggaaaagt ttgataagac tttctgatta
     6541 tggatatcta ttgttactac ttgattgatg ccaattgatt ctagtatgtt tccgatcaga
     6601 tctacactta taacttctcc atctatgaag gccttatcct gccttgtata ggccatataa
     6661 ggaatcaagg cgcaaatatg cttggcacga tctttattgc atttatagat catcatgaac
     6721 aattgcatta gacgttggtc tgggactggg taagtagagt gaactatgat gcattttttg
     6781 ttcgatacag aatccattcg aattttactt tcgccgtctg aaaaaatacg caaatctgct
     6841 ttcacgagtt gtacatctag attgtgtgca attttagctg caagctccaa attgtcaata
     6901 ctacttataa taacagtatc attttgcaaa gctaggcagt ttttgtacta tcatatgact
     6961 taaaagtgtt aatttatcgg tttggtaatc ataataatca aacagacaat gaatagttat
     7021 ctattgtgta taagggacat taattatctt tagatcttcc gctaattcta cattatcatg
     7081 aattgatttt gcttcgctta agagtactga cggatcctga tatcttgaac taaaatgagt
     7141 aagaaatagt gtgcgagctc ttgatgcttt tgctagtgaa gctgcttcaa tggcagtgga
     7201 gtgaaaagtt ctcactgcat tttcatggtt gttctgagag tatgttgatt cgaatatcag
     7261 tatatcagaa tcagaaaaaa atctttcgag ttccgttgtg ggtctagtat caccagatat
     7321 gccaatcttt cttgcttttc ttttgggtcc aactatctgt tccgacttga tattcatacc
     7381 attaaaaagt atatcttcat tattttgcag tttaccgaat aattctcctt taggaattcc
     7441 cagactgata gccttctcta tattaaattt gcctggccga tcaaattctt caatacaaaa
     7501 tgaatatgag agaatagaat gcaaagacct acagcaagac acttgatagt cagattcctt
     7561 tacaactaat ccttctttat atataacatg aatatcaaga tcgaaagata gcccaaaatt
     7621 aataatacga atattctgat taatgaattc caatagcttc ggctctccat agatatgcaa
     7681 ctttttagta cgtcctaaaa gtgacattgt ctgaaggagt cctaatatgc ctacacagtg
     7741 atctgcatgc atatgagtta caaataattt catttttcga tttatgccta gtcttgccct
     7801 cataaagttt ctttgcatgc cttcaccggc atcgaaaagt aataattctc ctcctctttg
     7861 tatggctata gaacttaatc ctctactaga agtaggaatt gcagccgagg tcccaagaaa
     7921 gatgattttc atacttacca aaaaagaagt ccccttctat cacacatttt agcagcgtga
     7981 atagatgtca ttttaatata ttaattatga tcttattaca acaagtatta gttaattgat
     8041 attctcataa taaaactaaa aataagtgta tattaaattc atctatagat gtattcaggt
     8101 tcttatgaaa tgccaaattg taatgcatgt aagaaggaaa ttcgcccatc agagttatca
     8161 gagagtttta tgtgtcctaa atgcaaggac cggttaattt ggagatgtga agaatgtaag
     8221 ggtgtatcaa gaaagtacag ttgtggtaac tgtggctatt ctgataataa ggcgggtatg
     8281 acttaatagc ggtagattga aaatatagtt gacttataat tattatgtag aaacataatt
     8341 gctgacttga ttggatttag gatctctagg taaatagtat tatgtaatga gagggcggat
     8401 cctaggtcat gaccttaaag aaatttctca ttaattcttg ttgttcatta gtgatgatgc
     8461 tatatgcttc aatgagttct ttttctataa gaatttgatc tcctattacg ggtcgcatcc
     8521 ttctgatatc aattggtgtt gcagtatcta tgatgcctgt actataagca tatacatatt
     8581 cactaataat tttgcttgca agatgaggag tgacctttag tagtagtatg agaccatttt
     8641 tcataatgag ctcttcggta gtattcacat taagggagct tatatacgac tcgagcaatt
     8701 tcattctgta atctccaagc tcttcaattg atgaagctac cagtatccct gtttcagtca
     8761 attcatagaa aggaactcct tctaattgga gagctttagg tccacttttt a
//
LOCUS       DASSIK010000201         5598 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1127143, whole genome shotgun sequence.
ACCESSION   DASSIK010000201 DASSIK010000000
VERSION     DASSIK010000201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5598
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1127143"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            207..509
                     /locus_tag="VFI64_03750"
     CDS             207..509
                     /locus_tag="VFI64_03750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242436.1"
                     /translation="MTLPKGYGGSGGRVSSSGGSGRDDIERMIGKRVEKMTGIFVMGF
                     ILAWIATAGGVYVGVTVYPWAYPLPSGLYALSVLTVIESLGLFWILKISREKPMRP"
     gene            689..1339
                     /locus_tag="VFI64_03755"
     CDS             689..1339
                     /locus_tag="VFI64_03755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia monooxygenase"
                     /protein_id="HET7242437.1"
                     /translation="MVWLRRTTHYLFIVVVAVNSTLLTINAGDYIFYSDWAWTSFVVF
                     SISQSTMLVVGAIYYMLFTGVPGTATYYATIMTIYTWVAKGAWFALGYPYDFVVTPVW
                     IPSAMLLDLTYWATRRNKHAAIIIGGTLVGLSLPIFNMINLLLVRDPLEMAFKYPRPT
                     LPPYMTPIEPQVGKFYNSPVALGSGAGAVLSVPIAALGAKLNTWTYRWMAAWSKWD"
     gene            1498..1653
                     /locus_tag="VFI64_03760"
     CDS             1498..1653
                     /locus_tag="VFI64_03760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242438.1"
                     /translation="MSDDHDRNKTQEEGTICEYCGLVLEACMCACPYCGERDSCECCL
                     YDAATGG"
     gene            1714..3678
                     /locus_tag="VFI64_03765"
     CDS             1714..3678
                     /locus_tag="VFI64_03765"
                     /EC_number="1.2.7.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020266864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018491 - 2-oxobutyrate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0019164 - pyruvate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0047553 - 2-oxoglutarate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:ferredoxin oxidoreductase subunit
                     alpha"
                     /protein_id="HET7242439.1"
                     /translation="MSSALVKNSLSWVIGGPQGSGVDSAANIFSRACAQGGLHLFGKR
                     EYYSNIKGEHSYFTVRVAENPVNSHLDEINILVTFDAETVFRHAHKVAKGGAIIYDSS
                     LVNISINEVPTIDDQSSIRISDILNTEGYPTTIQGILDFAKSNGCVVYGLPYFEMIED
                     LARGLNDPSLSKLTRMVNVIALSSSLALLKFDKKQLIKAIQTVFQTKPKVLGNNIAAA
                     EYAYSYIGKKYDIAQFNYVLEPRPPLKEYLLVQGNQASAMGKIIGGCRFQTYYPITPA
                     SDDSEFLEANQIFDLTSGAKGSIVVVQTEDEIAAITMAISAALTGVRSATATSGPGFS
                     LMAEALGWAGMNEVPVVITLYQRTGPSTGLPTRHEQSDLLFAIHAGHGEFPRIVFASG
                     DIEEAFYDSIKVFNLAEKYQLPVIHMLDKALANSIKTCKKFDQHKVPIERGDLISKVD
                     ENLSTRSGGHYLRFRLSDNPVSTRVPLGTENAIFWNTGDEHTEEGHITEDPDLRNKMV
                     SKRMNKLEKALSEIPIEDKLVCFEFGKSTGDITVVSWGSTKGAIIEAMELLAKRGKGI
                     RFIQLRLLHPFPTYEMMNLLKNTKLLIDIEMNYTSQLASLIKQHTGSDIDYRIVKFNG
                     RPMSTSEVYYAVSAILEGTSQKRIVLEHGT"
     gene            3668..4636
                     /locus_tag="VFI64_03770"
     CDS             3668..4636
                     /locus_tag="VFI64_03770"
                     /EC_number="1.2.7.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018491 - 2-oxobutyrate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0019164 - pyruvate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0047553 - 2-oxoglutarate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HET7242440.1"
                     /translation="MALKLAEYKTTVHNDWCAGCGDFGILNAIQMALHEMQIPRHRAV
                     IFSGIGCSGKTPHFINTYGVHTLHGRVLPFAQGAKLANPDLEIIALGGDGDGLGIGAG
                     HFVGAGRKNVDIPYILFNNAVYGLTKGQASPTLKLGMKTKSLSQPNSNSSVNPISLAL
                     VAGYTFIARSYSYDVRHLRDVIIKAIQHKGLAYVDVLQPCPTYNDINTREWFQGQDNI
                     DQESGHQVPRIYKIEDRGYDGVVHNTNELGNKMAQVLDIANEWGSKIPIGIFYQNEFV
                     PTYHERISQHISDYATNPPAKQPLCTTEGVPLADISKLLSSLRIDN"
     gene            4976..>5598
                     /locus_tag="VFI64_03775"
     CDS             4976..>5598
                     /locus_tag="VFI64_03775"
                     /inference="COORDINATES: protein motif:HMM:NF012550.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HET7242441.1"
                     /translation="MIDTIVNKVDSTPEQVSSIYERSKKNISNFRHIVDRPLTLTEKI
                     LVGHLVEIGPTEPHPGKSYVLLNPDRVALQDVTGQMTILQFMQAGLKQTAVPTTVHCD
                     HLIQARVEGKSDTTAAIYENNEVYQFLESASRKFGLGFWKPGAGIIHQVVLENYAFPG
                     GLMIGTDSHTPNGGGLGMIAIGVGGLDAAEVMAGLPWELLYPKRIGV"
BASE COUNT         1718 a         1034 c         1227 g         1619 t
ORIGIN      
        1 tctgaatttc cacttggtat tctaattcca catgtttggc tccatttgat tagtataaaa
       61 tagctaattg ttgctaatga gatcgagtgg atgggactac taccacgcga gtgcttgaaa
      121 aatctgccgt cctctgcaat atctactcag gtgttgaagg gacctagacg caaaatttaa
      181 aaaggctaca cttgaatgta taaacgatga ctttaccaaa gggatatggt ggcagtggcg
      241 gtcgtgtaag tagtagcggt ggcagtggca gagatgacat tgaacgcatg ataggcaaac
      301 gagtggagaa gatgaccggt atattcgtaa tgggattcat tcttgcttgg atagcgactg
      361 ctggtggtgt ttatgtcggt gttacagtat atccgtgggc ttatccattg ccaagtggtc
      421 tttatgcact ttcagtgttg acggtaattg aatcactagg attgttctgg atcttaaaga
      481 tatcaagaga aaagccaatg cgtccctaga actcttacat ttttttctaa ctaattttta
      541 acaatttttt accttaattt cttgtccttt tcattagttt attcttagag gcttattcga
      601 atagtgaaaa taggttgaat cggcactctt aacatataaa tgaattcggg ataaaatttt
      661 atatagaagc gttaggagaa ggttgttaat ggtctggctt agacgcacaa cacactactt
      721 attcatagta gtagttgctg ttaacagcac cttacttact atcaatgcag gagactacat
      781 tttctacagt gattgggctt ggacatcatt cgtagtattc tcgatatcac aatcaactat
      841 gcttgtggta ggtgcgatat actatatgtt gttcacaggt gttccgggaa cagctacgta
      901 ttatgcgaca atcatgacaa tttacacttg ggtggcaaaa ggtgcatggt tcgcgttggg
      961 atatccttac gacttcgttg taacaccagt ttggatacct tcggcaatgc tcttggatct
     1021 cacgtattgg gccacaagaa gaaataagca cgcagcgata ataattggcg gaacattggt
     1081 cggactttca ttgccaatat tcaacatgat caatctgttg ttagtgagag atccattgga
     1141 gatggcattt aagtatccgc ggcctacatt gcctccgtat atgacgccca tagagcctca
     1201 ggtcggaaag ttctacaaca gtcccgtagc attaggatca ggtgcaggag cagtacttag
     1261 tgtaccgatt gctgcattgg gagcaaagct caacacgtgg acatacagat ggatggccgc
     1321 gtggagtaaa tgggactaac tcacacccct tccttttttg ttttaattta ttatctcaga
     1381 actattctat aattaggtac caatttttat gacaatatgt atacgaccct gttcgaaccg
     1441 tcaatgtaaa gtataagttc aacttttctt taaccttact ctgatacagc aataatcatg
     1501 tcagatgatc atgatcgtaa taaaactcag gaagagggaa caatttgtga atattgtggt
     1561 ttagtactgg aagcatgcat gtgtgcttgt ccgtattgtg gagagagaga ttcctgtgaa
     1621 tgctgtttgt atgacgctgc tacaggtgga taatagattc atcattgaat cgattataaa
     1681 ccattaaaag taggacgtga gaaaaataaa aaattgagca gtgcactggt gaagaattca
     1741 ctctcttggg taattggtgg tccccaagga agcggtgtgg attcggcagc taatatcttc
     1801 tctagagcat gcgcacaagg cgggctgcat ttattcggaa agagagagta ttattctaat
     1861 atcaagggtg agcatagcta tttcactgtg agggtggccg aaaatccggt taattctcat
     1921 cttgatgaga taaatattct tgtaacattt gacgcagaga ctgtatttcg acatgcgcat
     1981 aaagtggcaa aagggggcgc gattatttat gattcatcac tagttaacat atctatcaac
     2041 gaagttccaa cgatcgacga ccaatcgtca attcgaattt ctgacattct aaatacagaa
     2101 ggatacccga caaccataca gggtatattg gattttgcaa aatcaaacgg ttgtgttgtc
     2161 tatggtcttc catactttga aatgattgag gatttggcta gagggcttaa tgatccttca
     2221 ttaagtaaac ttacgagaat ggttaatgtt atagcgctat cttcgtcttt agcactatta
     2281 aagtttgata aaaaacaact cattaaagca atacagaccg tctttcagac aaaacccaaa
     2341 gtactaggca ataacatcgc cgcggctgaa tatgcgtatt cgtatatcgg gaaaaaatat
     2401 gatattgccc aattcaatta cgtgcttgaa ccaagaccac cactgaaaga atacctgctt
     2461 gtacaaggta atcaagcatc tgctatgggt aagattattg gcggatgtag atttcaaacc
     2521 tactacccta taacacctgc aagtgacgat agtgaatttt tggaagccaa tcagatcttt
     2581 gacctaacaa gcggcgccaa aggatccatt gtggttgtac agacagaaga cgagatagca
     2641 gcaattacaa tggcgatatc ggccgcgtta acaggagtaa ggtctgccac tgcaacatcg
     2701 ggaccgggtt tctccttgat ggctgaggca ttaggatggg caggtatgaa cgaagtacct
     2761 gttgtaatca cgctatacca gcgtactggt ccgtctactg gattacctac tagacatgaa
     2821 caaagtgatc tcttgtttgc tattcacgca ggccatggag aatttccaag gattgttttc
     2881 gcctcaggag acatagaaga agcgttttat gattctatca aagtattcaa tctggctgag
     2941 aagtatcaat tacctgtgat tcatatgctt gacaaagcat tggccaacag tataaaaaca
     3001 tgtaaaaaat ttgatcaaca caaagttcca attgaaagag gagatctgat tagcaaagtc
     3061 gacgaaaatt tatcgactag aagtggtgga cattatctcc gatttagatt gagtgataat
     3121 cctgtatcta cacgcgtacc tcttggaacg gagaatgcaa ttttctggaa tactggagac
     3181 gaacatacag aagaaggaca cataacggaa gatcctgatc taaggaacaa gatggtaagt
     3241 aaaaggatga ataaattaga aaaggctttg tccgagatac caattgaaga taaacttgta
     3301 tgcttcgagt ttggaaaatc aacaggggat ataacagttg tcagttgggg ttcaacaaaa
     3361 ggcgctatta tcgaggctat ggaattgctc gccaagagag gcaagggtat caggtttatt
     3421 caacttagat tgttacaccc ttttcctact tatgaaatga tgaacttatt aaaaaatacc
     3481 aagctactta tcgacatcga aatgaattat acttctcaac ttgcatcatt aataaaacaa
     3541 catactggaa gtgacattga ctataggatc gtgaaattta atggtagacc aatgtcaacc
     3601 agtgaagttt attatgccgt aagtgctata ttagaaggta cgtcacaaaa gagaattgtg
     3661 ttagaacatg gcacttaagt tagctgaata caaaacaact gttcacaatg attggtgtgc
     3721 aggatgcggc gatttcggaa ttcttaacgc tatccaaatg gcccttcatg agatgcaaat
     3781 ccctcgccat cgagccgtga ttttttcagg tatcggttgc tccggtaaga cacctcattt
     3841 cataaataca tatggagttc atacacttca cggaagagta ttaccctttg ctcagggtgc
     3901 aaagttggcg aatcctgatc tagaaataat cgcattgggt ggtgatggag atggccttgg
     3961 aataggggct ggtcattttg ttggcgcggg caggaaaaat gtggatatcc cttacatatt
     4021 attcaataat gcagtatacg ggctgactaa gggtcaagca tcgccgacgc ttaaattggg
     4081 aatgaagact aaatccctat cccaacctaa ttcgaatagt tcggttaatc ctatctcact
     4141 cgcgttggta gcaggttata catttattgc tcgctcatat tcctatgatg ttagacatct
     4201 tcgtgatgtt ataataaagg caattcaaca taaaggtcta gcatatgtag atgtacttca
     4261 accatgtccc acctacaatg atataaatac tcgtgaatgg tttcagggtc aagataatat
     4321 cgaccaagaa tcaggacatc aggtgcctag gatttacaaa atagaagaca gaggctatga
     4381 cggtgtggtg cataatacta acgagctagg taataaaatg gcccaagttt tggatattgc
     4441 caatgaatgg ggcagtaaga tccccatagg tattttctat caaaatgaat ttgtcccgac
     4501 ctatcacgag cgcatatctc aacacatttc agattatgct actaacccgc cagcaaaaca
     4561 gccactctgt actaccgaag gagtgccgtt agcggatatc agtaaactat tatcttcctt
     4621 gagaattgat aactgagtaa tatcaactac actttttcat gatatgaatt ttggacgcta
     4681 ttttaaaaat tcaaacgctt catgtcaaat atttggatat tagtggtcac acatatgatg
     4741 atgaggtgga tcagcattat gagttcatga cagaatcatc aatgtcctct agagtaacca
     4801 tctatggtct ttaactatgc aaatgtctcc agttgattct tgtcagaaga gggcgcctgt
     4861 cactttggac cgaagaagag actcatttta ctttgtcgac aatatatgac gaaaaataga
     4921 ggtataggat gacttttatt tcaatatcgt cattgttatc attagcgttt agtggatgat
     4981 agatacaatt gtgaacaaag tggattcaac acctgaacag gtttcatcga tctatgaaag
     5041 atcgaaaaaa aatatttcaa atttcagaca tatcgtagac aggccactta cattaactga
     5101 aaaaatacta gtcggtcatt tggttgagat agggccgact gaaccgcacc ccgggaaaag
     5161 ttacgttctg ctaaatcctg atcgagttgc tctgcaggac gttacaggtc agatgaccat
     5221 tctccaattt atgcaagcgg gtcttaaaca aacagctgtc cctaccactg ttcattgcga
     5281 tcatcttatc caagcaagag tagagggtaa atcagacact accgccgcaa tttatgaaaa
     5341 caacgaggtt taccagtttt tagaatctgc ctcgagaaaa tttggtttag gattttggaa
     5401 accaggtgcg ggaataattc accaagttgt acttgaaaat tacgcttttc ctgggggact
     5461 tatgataggc actgattccc atacaccaaa cggcgggggg cttggaatga ttgccatcgg
     5521 cgtcggggga ttggatgcag cagaggtcat ggctggtctg ccttgggaac tactgtatcc
     5581 aaaacgtatt ggagttca
//
LOCUS       DASSIK010000202         3415 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1426871, whole genome shotgun sequence.
ACCESSION   DASSIK010000202 DASSIK010000000
VERSION     DASSIK010000202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3415)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3415)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3415
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1426871"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(322..540)
                     /locus_tag="VFI64_03780"
     CDS             complement(322..540)
                     /locus_tag="VFI64_03780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242442.1"
                     /translation="MSTAKKNQLKRDHALNDATSGQFREEPSSLPQPDTLYIENGACK
                     KSRTRTIKKYRLVIINCSGSKAEARHFR"
     gene            687..1133
                     /locus_tag="VFI64_03785"
     CDS             687..1133
                     /locus_tag="VFI64_03785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242443.1"
                     /translation="MNYRSLFPMVFGLVVVSIVGNVVFAQSSPFTPSQPQIKQPEIGV
                     KITSPSDGQKIKIGEAIPINGSSTDNPTADCHVAVIVNNVKPYQNAGAAGSGGNGDYS
                     SWIFNLMSNYTTIKEGQNKITAKLSCINSPSNLTKWFSVNVTGTPG"
     gene            complement(1360..2430)
                     /locus_tag="VFI64_03790"
     CDS             complement(1360..2430)
                     /locus_tag="VFI64_03790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242444.1"
                     /translation="MNKTIELGYESKLYSLLEKKKISEEQFDHFHRRGIQIISPSHDF
                     GLSSLGRILPEIVIGASPTYISTMKVPYQATSYLCADIRKENNGNDIRSSYIYKLPGK
                     PAGGVPLLTGGKRKIGDNVFASTHRILIGFKAVIVSALNLMVNKDKIWNWHFFGDHIK
                     ESNPDIYQDLIQLEEQLGQKNTICQIVVTRSAGTFKKLRIAEYFYKNKIAVLDPNNNI
                     KVIFITDQKGYDYACRRIPPSDLIDYVVTGEEFDIYQGMLTLRRKYNINIMLNDGGRQ
                     FSNGVRDAGLLAEERVTLEPYPGENVIPDVEKVDPASIMAMDGIGLDGSEIEGAIMVH
                     STGIQEEKANVYAYPLDETKVI"
BASE COUNT         1012 a          632 c          614 g         1157 t
ORIGIN      
        1 acacgtcacg cttaccataa tcattaaagc cgcgacagaa aaaactgtta cttcggttga
       61 ggaggctcac aaaatctcaa catctgtaca agatagtatt atgaaagaaa ctggagctgc
      121 gagagtcgtt gttcatacag aaccgttttg aacttcccga taaccagcaa catattctag
      181 attctgcaat tttttccaaa atttagttcg taatttttac aataacggta atgatgattc
      241 tttaggagtc gattaagagt tcaagatcag atttgtataa tcattagtaa caattacggg
      301 tgatacttgg cggacagaat tctatctgaa atgccttgct tctgctttag agcccgaaca
      361 attgatgata actaatcgat atttcttgat agttctcgtg cggcttttct tgcatgctcc
      421 attttcaatg tatagcgtgt caggttgagg gagagatgaa ggttcttctc taaactgtcc
      481 actagtagcg tcgttaagtg catgatcccg ttttaattga ttcttttttg cggtactcat
      541 actataaaac tatagatgat gcctcttatt gatgaaataa ccatctgagc caatttcatt
      601 ctctacaaat atgtagcgac gtattagaag gcagaaggca atagatatct atatagccaa
      661 tgaagttcta aatttagttg tttggcatga attatagaag cctgtttcct atggtttttg
      721 gattagtagt tgtaagcatt gttgggaatg ttgtttttgc acagagctct ccttttacac
      781 cttctcaacc acaaataaag cagcctgaaa ttggagtaaa gataacgtca ccatctgatg
      841 gacaaaaaat aaagattggc gaagcaattc caattaatgg cagttctact gacaacccaa
      901 ctgccgattg tcatgtggca gttatagtaa acaatgtaaa gccatatcag aatgcaggcg
      961 cagcaggtag tggtggcaat ggcgattatt ctagttggat tttcaacctg atgtctaact
     1021 acacgactat taaggaagga cagaataaga taacggctaa attgtcgtgt atcaatagtc
     1081 ctagcaacct aacgaaatgg tttagtgtaa atgttactgg taccccaggt taagaaaaac
     1141 tgcaaatgta acaacgacta caagtactgc gcgatcccca atcaacgttg aatgtatatc
     1201 aaatctcatt ctattatttt ctgaaatgag ctatcagcgt attcgaagtt tatttctttt
     1261 tgatctgtga tttgcagtac tgttcttata tttcgtatac atcttcattg tcctaaaaat
     1321 tctcatgatc aatccttggt tttttcttaa ctagaatatc taaatgacct ttgtttcgtc
     1381 cagtgggtag gcatacacat ttgctttttc ttcttgaata cctgtggaat gaaccattat
     1441 agctccttca atttcacttc catctaggcc gattccatcc atggccatta ttgatgcagg
     1501 atcaactttc tcaacgtctg gaattacatt ctcgcctgga tatggttcca gagtcactct
     1561 ttcttctgct agaaggcccg catctcttac accatttgag aattgccgtc ctccatcatt
     1621 caacattata ttaatattgt atttacgtcg taaggtcagc attccctggt atatatcaaa
     1681 ttcttctcct gtaacaacat agtcaatgag gtccgaaggt ggaattctgc ggcaagcata
     1741 atcgtatcct ttttggtcgg taatgaaaat tactttgata ttattattgg gatcaagaac
     1801 cgctatctta tttttgtaaa aatattcagc tatccgaagt tttttgaagg tccctgcaga
     1861 ccttgttaca acgatctggc agattgtatt tttctggccg agttgttctt ccaattgaat
     1921 cagatcttga tatatgtccg gatttgattc tttgatgtga tcaccgaaaa aatgccaatt
     1981 ccatatttta tctttgttta ccatcaagtt aagtgcacta acaattactg ccttgaaacc
     2041 tatcaaaatt ctgtgagtgg aagcaaagac attatcgcca atctttcttt ttcctccagt
     2101 taatagcggc acacctccag caggttttcc aggcagcttg taaatgtaag aagaacggat
     2161 atcattgccg ttattttcct ttcttatgtc cgcacacagg taacttgttg cctgatatgg
     2221 aaccttcatt gtactaatat aggttggaga tgctccaatg actatttccg gcaatattcg
     2281 tcctaatgaa cttagtccga agtcatgaga gggtgatatg atctggatac ctcttctatg
     2341 aaaatggtca aattgttctt ctgaaatttt cttcttttct agaagtgagt atagcttact
     2401 ttcatatccc aattcaatgg ttttattcaa tatatcctaa gttactcatc attcttatta
     2461 atattgataa tctacactct aaattactag aaatgagaag tgttaaaggg aaaatttcgt
     2521 tatttcagtg ttggttaccc cttacagtaa tgaatttgga cggacggtta aaatttaatt
     2581 accgtaataa tggtgtctct ttcattgaga agatcgtaaa caaattctcg tcgacttatg
     2641 gtaaaccggc cactacaaag atggtttgaa aaatatccac ttaatcaggg gaaaagatat
     2701 gcaacgaaag aatactgtta aaaaaactcg attagttatt aaagtcgttg tggggaagat
     2761 gccgtttgta atgctgagta catcaggaat taattagtcc ctctataaac caagttcgag
     2821 tagtattatt ggatattctc cgaacgtaaa atgctttgtc tcttttttag aagcatacaa
     2881 tcatgtaaga ttataaaaac taatgacaac cacagttgca gaatccgtct cttgagggct
     2941 cgtatgtgag acaattatga ttgcagtcgt tacaaataag aaatttatca ttctgatctg
     3001 tttggacagg gttactgtgt atcttatttg gatctgatct ctttcggaaa tttgaatcaa
     3061 atgataattt ctcgacctga gccttggacc ttcctttatt acgaatcatc gattatctaa
     3121 tgtgccatat agtttataac aaatgctcaa acaacttata caaaaatagt ttatttgcct
     3181 acaattatgt ttattcattt ttctaagtgt cgtattgaat ttaacattct ttcatgattc
     3241 tcatcttatg tcgctgaggt catcctctgc ctgtggtagt tcaaccaact tattactata
     3301 gcaatgacca ctccactagt aatgctgagg tatgaggaat gcacccttag tagtactata
     3361 agccgaatct gaatgttatt atttgcgctc gcttatggct taaaagacat gtttt
//
LOCUS       DASSIK010000203         3353 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1046817, whole genome shotgun sequence.
ACCESSION   DASSIK010000203 DASSIK010000000
VERSION     DASSIK010000203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3353)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3353)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3353
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1046817"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..189
                     /locus_tag="VFI64_03795"
     CDS             <1..189
                     /locus_tag="VFI64_03795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242445.1"
                     /translation="ISPNILSHKLVSDLISRKIFAVKRMVVMCKDSDLEKISDAKVGC
                     ETYCYRQHKSLTRCIVVI"
     gene            386..1090
                     /locus_tag="VFI64_03800"
     CDS             386..1090
                     /locus_tag="VFI64_03800"
                     /inference="COORDINATES: protein motif:HMM:NF012385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HET7242446.1"
                     /translation="MENELRLKEQRKVLINDESYGPKWNGFSSIIGYDDVKKLFNLSL
                     ESDNPVHILLVGPPASAKTLFMLECIKLDRSYFTLGSHSTKSGMVDYLFQNRPKYLII
                     DEIEHMPIKDQTALLSLMETGIISETKHKKTRNTQLKTWVFATSNGIEHMLTPLLSRF
                     LVLHFKPYKFENFQEITAHMLEREGITHEVSNEVAQAVWSKLKSRDIRDCIKIGHLAK
                     TKEDVNWIVSTIRNYR"
     gene            complement(1254..1520)
                     /locus_tag="VFI64_03805"
     CDS             complement(1254..1520)
                     /locus_tag="VFI64_03805"
                     /inference="COORDINATES: protein motif:HMM:NF026297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HET7242447.1"
                     /translation="MKNQSKEEIYTTILENIRNINNVPLVTRIMYVSLHSHKQLKGYL
                     AHMIENDLLKYDGQKHVYEVTSKGKQFLFLSKHLSQLLCPEKYG"
BASE COUNT         1116 a          580 c          575 g         1082 t
ORIGIN      
        1 atatcaccta atatactctc ccacaaactt gtttccgact tgataagcag gaagatcttc
       61 gcagtaaaaa ggatggtagt catgtgcaaa gattctgatc tggaaaaaat atccgacgca
      121 aaggttggct gtgaaactta ttgctatcgt caacataaga gtctgacccg atgtatagtt
      181 gtcatctgac tatgtgagga attctttttt attctcattt ttctcgagaa ttgatagttt
      241 tattttcagg caaagccctc aaattatatt ctaactacga atcagaataa ccctgttggc
      301 tgaaatcgtc tatatttttc gagcagatgg acattgatat ttgttaggaa gacctataat
      361 cgttgcatga ttttatttag taagattgga gaatgaacta aggttaaaag aacaacgtaa
      421 ggttctcatt aacgatgaat cgtacggacc caaatggaat ggtttcagta gtattattgg
      481 atatgatgat gtaaagaagc ttttcaattt atcacttgaa tcagataatc cggtccacat
      541 tttacttgtt ggtccaccag catcggcaaa gaccttattc atgttggaat gtatcaaact
      601 ggatcgttca tactttactt tgggtagtca cagtacgaaa tctggaatgg tcgattacct
      661 attccaaaac cgtcctaaat acttaataat tgacgagatt gaacacatgc ctattaaaga
      721 tcaaacagct cttttgagtc ttatggaaac aggcataata tcagaaacga agcacaagaa
      781 gacacgtaac acacagctta aaacatgggt atttgcaact agtaacggta ttgaacacat
      841 gttaactccc ttgctttcgc gattcttggt attacatttt aagccatata aattcgaaaa
      901 ttttcaagaa attacagcgc atatgctcga acgtgaagga ataacgcatg aagtctcgaa
      961 cgaggtcgcg caggccgtgt ggtcaaaatt gaaatcacgt gacataagag actgtataaa
     1021 aataggacat cttgcaaaga caaaagaaga tgtaaactgg attgtatcaa ctattcgaaa
     1081 ttacagataa aaatctatta agtcatcata aagcaaatga cttcactata gccattggac
     1141 atacttaatg aacgctttcg tttatttgtg atggcaagac aattatcaat cagtggtgct
     1201 atagacgtaa agttgatctt tcgatattgg atcgggcgta tagaatttta agatcatcca
     1261 tacttctcag gacatagaag ctggcttaaa tgtttagata aaaacaagaa ctgtttcccc
     1321 ttgctggtga cttcgtaaac atgtttttgt ccatcgtact tcagtaaatc attttctatc
     1381 atgtgggcaa gatacccctt caactgttta tgagaatgaa gtgaaacgta cataattctc
     1441 gtcactagag gaacgttgtt tatgtttcta atattttcta gaattgtagt ataaatttcc
     1501 tctttacttt ggttcttcat gcccatatct tgatgaatta atttttagag ttgaagataa
     1561 aaaggtaatg gaaaataaaa aagtaaattg tcgcagatat cttttctact gcacacttaa
     1621 cccacagaag cgttgtcgcc aaggcaatat aaggcatcat aattgttgga tttagaactt
     1681 tatctagcag tagaaattat agtaccgcac caaaatgttc caatttctat taattatgct
     1741 aacagtattc ttcaaatatg tgcaaatact gatgaattaa aatctatact aaaaaaaaca
     1801 attattgaaa gtcgtgtagg cgcctgtctt tatgcaattc aatttttctc tggacctcca
     1861 tcgtatggtt cttgaaaatg tgatcatccg cgcattgact atgcattata ccgatttcgc
     1921 aaaattcgca tgaagtaaca atatctcggt cttcgaatga ttgattgcag aatttgcaaa
     1981 tatcagtttg gatatcataa tttgatagag gtttcaacca acattcacgc caaagaacta
     2041 tagtcattct cagtttaatg gaataatctt gcatatattt caataaatat tatcactgtg
     2101 gccagataag agaatagctc cccctaatga catttgttca tgagaccttt gaagatgatt
     2161 cttttcaaag ttaaattctt caaatcggtc tgttaggtga atctaatata aaatctgaca
     2221 atatgtatct ctactactgc ttgaccataa acgtaccttg aatattctac ttttgatcta
     2281 tgtgaatgag aattaacatc ggtaataggt cagaacaaat gatttttcta tgataaatct
     2341 atatattggc agattctcta acctacatgg ctaattgtcc ttattgtaac agtgatatct
     2401 ttagtaccgg ttggaatgtg gaagaagtgg atattggcca caaaactatt aggggaatta
     2461 taatttcctg taaggaatgt cacaagatgc ttacaatttt tcaagcgtaa aaacttaaac
     2521 gacttttcca aaacgaggta ttaagaaaac ctacaatgtt caaaataatg atgtaactat
     2581 aatctagtaa caccaatcta caatatggaa gttaggggtg atcgcatctt tattttgaat
     2641 attttatgac aagaagttaa acgacttttt atgatgctca aaggtaatca tgttatgaaa
     2701 tgtgaagtaa tgataatcaa tatttgctga caccaacaag tcttggattg aatccaacag
     2761 taaataggtt gcattaaaat aacctgaatc aaaaaaaatg caatttaacg aaagatcagc
     2821 catctcagaa aattctactc ccggcttgat aaatggttct ggtaataata cgttcggcgc
     2881 ccttctaaat ccattgccgg cgcagtgatc tactagcctt actaatctat ttataccata
     2941 taacaatcct atactaaggg attcacatta cgatttctat ggaaatcttt atgtcacctg
     3001 ttcccggtaa ctgacaagat ttcctctaga gctgctgtcg taatgtgaat acccttttac
     3061 taaaaatgac tttttctgtt ctatatccat actgtcgcca tgctcgtcag gaagcaataa
     3121 tttggggatg ctttgtatac acaagactag gaatcaacta gaatatgcca tacacaaatt
     3181 ccattggtac tgtaattatt actagaattt ctagatcaaa ttgtattgcg ataagttctc
     3241 agcaattcca gaaacttagg gatttttcgc atgcttctta cttattttct ggaacgccat
     3301 gcattatata gcatatatga tattttcaat ttatgaaact tggacaaact cct
//
LOCUS       DASSIK010000204         2361 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_930361, whole genome shotgun sequence.
ACCESSION   DASSIK010000204 DASSIK010000000
VERSION     DASSIK010000204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2361)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2361)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2361
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_930361"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            330..614
                     /locus_tag="VFI64_03810"
     CDS             330..614
                     /locus_tag="VFI64_03810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HET7242448.1"
                     /translation="MMKYRSRDEITATILQSAAGRDGITRTKIMYNSFLSYTQLLYYL
                     DYLCTNELLDHDRQNKKYNITAKGLEFLHAYNKMADLLKLPDLSASPSKF"
     gene            complement(601..774)
                     /locus_tag="VFI64_03815"
     CDS             complement(601..774)
                     /locus_tag="VFI64_03815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242449.1"
                     /translation="MLSNNNMVKSELFPISGTSYRGTANPKVCHDSILRDDNAKDKAS
                     IEAAWVVTVFKTY"
     gene            complement(1080..1514)
                     /locus_tag="VFI64_03820"
     CDS             complement(1080..1514)
                     /locus_tag="VFI64_03820"
                     /inference="COORDINATES: protein motif:HMM:NF012573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005509 - calcium ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HET7242450.1"
                     /translation="MVDDTIIGKEGNDRLYGLAGADKIFGDSGDDILQGDQGNDILNG
                     DDGNDLIVGGGDVDNIVGGNGDDILIASYAVNNISIRDYAQDSIACGSGDDIAYFNVA
                     DNDSASNDCENLISTSGPPSNSTVILPEVLSQEEAVNESNIF"
BASE COUNT          765 a          455 c          421 g          720 t
ORIGIN      
        1 cccactgggg ttgaaaggac ttttgcatgt gaagaatgtg gcgggatttc ctttaaaaca
       61 tcagaagaat taaggaaaca tgatcgtgag gtccatcaga taaattagaa cagatacaaa
      121 caacttacgt acacgattct tactaggatc acaactgatg tacaattaag aacgcaaagt
      181 attaacaaaa gatggacacc ttcgtgaacc gggagagtca acgaggagac caatatccat
      241 gagtgaatat tgaactgtgt tagtgaacaa aatcaaataa ctctgcaatt tgactaaata
      301 ctttattaat gataatgtta taatactata tgatgaaata ccgaagcaga gacgagatca
      361 ccgcaaccat tttgcagtcg gctgcaggga gggacggaat aacgagaacc aaaataatgt
      421 ataattcctt cctgtcgtat acccaattat tatattattt ggactactta tgcactaatg
      481 aattattgga ccacgataga caaaataaga aatacaacat tacggcaaaa ggattggaat
      541 tcttacatgc gtacaacaaa atggctgatt tgctaaagtt acctgacctg tcagccagtc
      601 ctagtaagtt ttaaaaacag ttaccaccca agccgcctct atagaggctt tatctttggc
      661 gttgtcatct cttaatatac tgtcgtggca gacttttgga tttgccgtac ctctatatga
      721 cgttcccgaa ataggaaata gttctgattt taccatatta ttattagaaa gcatatccta
      781 cagtgccatt aatacgattg atcatacaat gaattggaga catatgctaa cgcgtaaaag
      841 ataggtacgg ccacaattaa gctggaatcg ctttagcggt gcggtagatt attaatccag
      901 gttatgtata ttaaaggttc agaataataa aaacttcttt ctttgcttat ttgcacctga
      961 attgtagagc caggacagga attcctactt cgttagtcga tacgatcaag tgatagataa
     1021 aatgagatta atgcaagtag taataacgat tggtaatggt agtaatacca tgggatctcc
     1081 taaaaaatat tagattcatt cactgcttct tcttgtgata aaacttcggg taaaataact
     1141 gttgaattag aaggagggcc agacgttgaa attaagtttt cacaatcatt gcttgcactg
     1201 tcattatcag ctacattgaa ataagcgata tcatctccag aaccacaagc tattgaatcc
     1261 tgtgcataat ctcttatcga aatattatta acagcataac tggcaattaa gatgtcatcg
     1321 ccattgccac cgacaatatt atctacgtct cctccaccca cgattagatc gtttccgtcg
     1381 tcgccattca ggatatcatt cccctgatca ccttgtagga tatcatcacc gctatcaccg
     1441 aagattttat ccgcccctgc taatccatac aatctatcat ttccttcttt cccaataatt
     1501 gtatcatcta ccatagtacc gaatagataa tttttgaacc catttccgat tacgctccca
     1561 cctataactt cacctagact tgaagatggc agagagagag caaaaataat aacagtccta
     1621 cgaaagtcag gaaaatagta cgctgtgcat tagtaattgt attctttagc atcgtcatgt
     1681 tgattcgcat tacatgtacg tgaattagac tcgcatttgt gatataagta gtacctagga
     1741 atattatcaa aaatgtccta ggaatagggt tttctcgcgt agcatatgtg tgagcccttt
     1801 gtcgtgggag attagaggtt ttattaaaag tcactatctg gccagagaca ggaatacggg
     1861 agatgattgt gtaaccgagc tagtgtaggt tatctcttgg gagtaaattt ttgaactttt
     1921 agtatgactt cttgcttttt cctcaattct cgctctcgta acttgacctt atatttaaga
     1981 tttcggggtc ttgttctcag tctataacca cagcacggac accataatcc atcccaagtt
     2041 atgaagatct cacagacttg acatcgcttc tgtccagtaa gatatcgacc aactccaatt
     2101 ggttttagtg ctttatgacg aatgcaaatt cctttacaga ccaattttaa ctataaccta
     2161 cctattcacg taaatcgata atcaaataac attactagta ggtaatatta acatttactg
     2221 aaaaaacaat cggttttttg caaatgcgat tgatttcgaa tgattgaaat taacttgaat
     2281 accacgttta caccttccta caaccatgct atttttggtt atagaaaaca gtatttattg
     2341 agggtcacta tccaagatct t
//
LOCUS       DASSIK010000205         2332 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_731757, whole genome shotgun sequence.
ACCESSION   DASSIK010000205 DASSIK010000000
VERSION     DASSIK010000205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2332)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2332)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2332
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_731757"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            424..1398
                     /locus_tag="VFI64_03825"
     CDS             424..1398
                     /locus_tag="VFI64_03825"
                     /inference="COORDINATES: protein motif:HMM:NF019474.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HET7242451.1"
                     /translation="MSNIPYSEIEENARALLNNLQQQGGPPIYTLSPDQARGVLSELQ
                     ASSLVQKLPADVENRTIPGGSNSKDVSITIVRPQNSSTDTLPVVVFTHGGGWVLGGFD
                     THERLVREIANKAYVVVVFVNYTRSPEAKYPTALEQAYAVANWVAQNGQSINVDSSRL
                     AVVGDSVGGNLTAALTLLAKERGGPSIRFQVLFYPVTDANFDTSSYRKYEEGYWLTRE
                     GMKWFWNNYTSNETNRKEPTVSPLQASIEQLSGLPPALIINGENDVLSDEGEAYALKL
                     LQAGVRVTAVRYHGTIHDFVMLNAITNDPAPRGAIEQASQMLKQVLSN"
     gene            2012..>2332
                     /locus_tag="VFI64_03830"
     CDS             2012..>2332
                     /locus_tag="VFI64_03830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242452.1"
                     /translation="MSKIVKINIGLVLIMAFIVTSITISNYINVAEAKGIKLKVYTDP
                     YNRYTINYPAKWSIQSEPVHTEGILQALNEVPLIFGDNKGSTLSVTELEKSPTLNLRE
                     FASTV"
BASE COUNT          748 a          461 c          471 g          652 t
ORIGIN      
        1 tattggacct gagtataact ctagttttgg gctttatatc actctcatat tccggctttg
       61 cgagctcaga gaacaagaca ataatgcaac ctcagaatat gtagagtatg gtaacaaacg
      121 ctaccaatat tgttcttgtc catggattct gagctgatgg ctcttcatgg agcaaagtaa
      181 ttcctattct aaagaacgca ggacatcagg ctactggaac tagcatcctg atagcatgat
      241 tagcttcgct atttatagtg gtagcatcat ttgttttgcg aaagacgtta cccatacgca
      301 taattagtca tcagaactgt atcctagctg ctgccttggt aacgtaagac aatgattaac
      361 gcaaaacaga gttaatatca aaaaaccgaa actcgtaata accagaaaca atattccata
      421 tttatgagca acattccata tagcgaaatt gaagagaatg ctcgagctct tttgaataat
      481 ctgcagcagc aaggaggacc accgatttat actctgtccc cagaccaggc tcgtggtgtt
      541 ttatccgagc ttcaggctag ctctctggtc caaaaacttc cggcggatgt agagaatcgt
      601 actataccag gggggtctaa ttccaaagat gtatctatta ccatagtacg cccccaaaat
      661 agtagcactg atactttacc agttgtagtc ttcactcatg gaggcggatg ggtccttggt
      721 gggttcgata ctcacgaaag actggtgaga gagatagcaa ataaagcata tgttgttgtc
      781 gtgtttgtta actatactcg gtcaccagag gcaaaatatc cgactgcact agaacaagct
      841 tatgctgtag caaattgggt agctcaaaac ggccaatcta tcaatgtaga ttcttcccgt
      901 ttagctgtag ttggcgatag tgtaggaggg aatctaactg ctgccctcac cttgttagcc
      961 aaggagcgtg gagggccctc catcagattt caagtactct tctacccagt tactgatgcc
     1021 aactttgata catcatcgta caggaagtat gaagaagggt actggcttac ccgcgagggc
     1081 atgaaatggt tctggaataa ctatacttca aatgaaacaa atcgaaagga accaacggtt
     1141 tctccactcc aggcatcaat agagcaactg agcggattac cgccggcact aatcatcaat
     1201 ggtgagaatg atgtactgtc tgacgaagga gaggcgtatg cactgaaact tttacaggcg
     1261 ggcgtccggg tgaccgccgt tcgatatcac ggtactattc acgactttgt aatgttgaat
     1321 gcaattacaa atgatcccgc accacgggga gccatagaac aagcttctca aatgttgaaa
     1381 caggttctgt caaactagta ataaagtcat taagtcttga ttcaatttac tctttttaga
     1441 ctgcctcaaa tttcaatagt tgagtgtcac atccaaatga gatcgttgct gacattacaa
     1501 acgtggtaaa tgccaagtat atttattgtt ttaacgattg ctcctctccc tctcttgttg
     1561 gtactatgct cgatattagt tgcaggtctg aataatagat actcgcccca actgacgaaa
     1621 tgaacgaata ctctaactct gaagggccaa gtgcatcaat gaatcgttga caaccctgtg
     1681 aagagtctta acagggttag aattgcctgc tggccaataa cactgcaaga gttagatttt
     1741 tctcatcaga gtgatgttat taccaataac acgtaaggaa tcggagccga atacaccgat
     1801 ttttactgta atagggtaac atcaccaatt agtggtataa agcctgtaca ggactattat
     1861 tgcaaaagct ttggtgcaaa ctaccagtat tcaacaaact aaattcaacc attaatatta
     1921 ccaaaatagg gcaattacac ttataatttc gtatcacatt aaagtgtaac gacgttaaac
     1981 gtctgaatag tgtcaattga gggtgattta aatgagtaaa atagtaaaaa taaatattgg
     2041 attagtatta atcatggcat ttatcgtcac cagtataaca ataagcaatt atattaatgt
     2101 agcagaagcg aagggaatta aacttaaggt gtataccgat ccttataata gatacacaat
     2161 aaattatcct gcaaagtggt cgattcaatc agaaccagta cacaccgaag gaatattgca
     2221 agcattaaat gaagtgccat taatttttgg tgataataaa ggttcaactt tatcagtaac
     2281 agaattagaa aaatctccta cattaaattt gagagaattt gcatccactg ta
//
LOCUS       DASSIK010000206         6409 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_139658, whole genome shotgun sequence.
ACCESSION   DASSIK010000206 DASSIK010000000
VERSION     DASSIK010000206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6409)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6409)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6409
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_139658"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            134..301
                     /locus_tag="VFI64_03835"
     CDS             134..301
                     /locus_tag="VFI64_03835"
                     /inference="COORDINATES: protein motif:HMM:NF026297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HET7242453.1"
                     /translation="MYKAFLSFVPLKGYLSVLLENELIEYDAGGKIYKTTPGGIRLLE
                     VYNQLHELIIS"
     gene            563..1009
                     /locus_tag="VFI64_03840"
     CDS             563..1009
                     /locus_tag="VFI64_03840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242454.1"
                     /translation="MNTQVNLSLMFSRPLLIYDDTCLSCGKFAEIVNIISRGWIRIAG
                     HHYSKEALEAKQVIFPKGYDATKMFWLINSKGAYGARAGLMPVVKEVLIGLLVHNESP
                     RLNAGAVKYSCDVQSSSCMSTQGLISRIMNMAKTSVVFPFDQSHRI"
     gene            1460..2011
                     /locus_tag="VFI64_03845"
     CDS             1460..2011
                     /locus_tag="VFI64_03845"
                     /inference="COORDINATES: protein motif:HMM:NF013936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HET7242455.1"
                     /translation="MSATQDLKEDHIIVRRLGSIAQKCSNKLSANKPIPLEDIKIISV
                     IIEEFVDSFHHGKEEKVYFPETEDRDNFAEDIRKFLIEHELGRRIARMLSRHLDSWQK
                     GTDSREPVARFLKSYAVFIADHTGKEDKFFDLVEENGILSNEENAMLIQHYESCHKQI
                     GGKIRIEQMIKLIDYLENRDWMK"
     gene            2256..2915
                     /locus_tag="VFI64_03850"
     CDS             2256..2915
                     /locus_tag="VFI64_03850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242456.1"
                     /translation="MAEPKHILTCSIVIAVVILLGVHCSTSKVHARSEWETRAEAQYE
                     FAKFVDKLQKEIKTKDPQAFTDYKKVIVQLLPEFRQIIDRLDPLVKIEFCKLASTSSV
                     FPVDCELLDQSLPLPTSQSNAIGNSSDPCSALQTDSYLTVLEINTLQIQCDKKISNAR
                     NPENQRGEEISNETSTTRAKERLNVGCDTLLLLSNETQNILKNMNKDIASCYTMDSKR
                     N"
     gene            complement(3016..3294)
                     /locus_tag="VFI64_03855"
     CDS             complement(3016..3294)
                     /locus_tag="VFI64_03855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242457.1"
                     /translation="MDSITSMLYEVFEIEPFKRDYNSVFGQIANILHRYSIIENPRNL
                     RLRFTLCMQEFFDGLPESQWNLKDPKFLKQSEEFAIAKFREWILEQIT"
     gene            3757..4752
                     /locus_tag="VFI64_03860"
     CDS             3757..4752
                     /locus_tag="VFI64_03860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphosulfolactate synthase"
                     /protein_id="HET7242458.1"
                     /translation="MTHLLDELVKDRVDAKKPREEGLSYTIDKLRAFDRENFEIIAPM
                     IDVVKIYSAFPLLIPDSFLKKKIQFYHGFDIMVSTGSTLTEFAISEDSFDEFLKESAR
                     VGFDIIEIGENNIDLDKDRKKRLAESVLAAGLKFNWKIGKKDPRHQLRIDNALSKVEE
                     ALSVGAKKVILEANEGINVGIYNENGAIRWNYLAALTAKYPPNTFIFEAPLESQQSAL
                     VAEFGQRVNLAEIAMDHVVSIESQRRGFLSKSSFGMSFMQKEIGGGPASKFIFYLINT
                     KYPIEQSDLINITHLPRRTIQSAIEDLRDQGFIIERNSLDDTRRKVYYPVQSEWL"
     gene            complement(4987..6123)
                     /locus_tag="VFI64_03865"
     CDS             complement(4987..6123)
                     /locus_tag="VFI64_03865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HET7242459.1"
                     /translation="MIRKSSIAIVSTALIVIGLIAGLSISNHAYSQGTEKKVLRLGFF
                     PNINHAQAVIGVGNGAFQKSLGDNIEIKRFIFNAGPSAIEALFAKQIDATYVGPNPAI
                     NGYIVSGGKDVRIVAGASSGGAVFVVRNDSGIQSPKDFAGKKFASPQLGNTQDVALRK
                     YLLDNGYQTKEHGGNVEVVPAKNADILTLLLKKQVDGAWVPEPWGERFIKEANSRLFL
                     DERDLWPDGKFVTANILVRTDYLQNNPDVIKKLLASHVDETQWINTHQDEAIKQFNIE
                     LKKLTGQIIPEDVLKQSLPRLELTWDPIISSLIKSANDAFDIGFLGKTRPDLSGIYDL
                     KLLNEVLKDKGLQTIDESPRSGNTTTTTANATLTTAPNATNATK"
BASE COUNT         2104 a         1095 c         1207 g         2003 t
ORIGIN      
        1 taacaaatga tgatcacaaa taaatactct aacatacgat ggagtgattc aacgaatgaa
       61 atatagaagc agatcagaaa tagtagcctt gatcttagaa gcagcaaacg gtgggacgac
      121 ttaggccaaa ataatgtaca aggctttttt atcattcgta cccttgaaag gatatctttc
      181 tgtgctattg gaaaatgaat taatagagta tgacgcagga ggaaaaatct ataagacaac
      241 tccaggaggt atacgacttc tagaggtcta taatcagtta catgaactaa ttatttcgta
      301 gccaacgtca aatagagata gcatagctcg atactagccc ttgattcata tagtaatatt
      361 tctgtaactt gtcgaagttc cgtactaaat agaatagctt tgtattcgaa atggttcttc
      421 aggtcgggtt gagtctctcg ttactcggtt gttctggctg ggagtgctta gcatgatctt
      481 acgtatttaa gtaatataat ccaactgtgc taggaaccat catataaaca aaataataat
      541 aatgagatag actcataaga atatgaatac tcaagtgaac ctatcattaa tgttttcacg
      601 acctttatta atttatgatg atacctgttt atcatgcgga aagtttgcgg aaattgtaaa
      661 tataatttcc agaggttgga taagaatagc tggacatcat tattcaaaag aggccttaga
      721 ggcgaagcag gtaatttttc ccaaaggtta cgatgcaacg aagatgttct ggctaattaa
      781 ttccaagggt gcatatggtg caagggctgg tttaatgccg gtggtaaaag aagtccttat
      841 tggattgtta gtccacaatg aatccccgcg tctgaatgct ggtgccgtaa agtattcgtg
      901 tgatgtacag tcgtcatcat gcatgtctac ccagggccta attagtcgaa ttatgaatat
      961 ggcaaaaacc agcgttgttt ttccattcga tcaatcgcac agaatttagg aaaatcagca
     1021 tatattaatt gatgtagatt caggttgtga acgagattcc gtttatcggg agtctcaaag
     1081 tgctaaaggg ggatgggtat gttttataaa cagaacttat tgtgtagatt taattctaac
     1141 catagatgac aataatgttt cacaggtctt tctacaggtt tgtaattcta atagtcaccg
     1201 actagtattc attttatgtt tatgcatcaa cgaattatga tgtaatcttg aaaaagaaca
     1261 gtccgataaa agaagtaata ttttggtaga agccaaattt acaattattg atctatgtga
     1321 cttggtgatt ttagaaattc aaaaataatg aatatacaat attattaata catcccaaat
     1381 tgtcttaagt tgtttagata tcgagtatcc attaatattg gttgatgtta aactataaag
     1441 gtactaaagc gcatgagaaa tgagtgcaac acaagatcta aaagaagacc acataattgt
     1501 taggagactg ggttcgattg ctcagaaatg ctcaaataaa ctttctgcca acaaacctat
     1561 cccgctcgag gacatcaaaa taatttctgt aattatcgaa gaattcgtag acagctttca
     1621 ccacggtaaa gaggaaaagg tgtatttccc agaaactgag gatagagata attttgctga
     1681 agatatccgc aaatttctta tcgaacatga acttggaagg aggattgcca gaatgttaag
     1741 ccgacatttg gattcatggc aaaaaggcac agactcaaga gaaccagttg caagatttct
     1801 caaatcatac gctgttttta tagcagatca tactggaaag gaagacaaat tctttgattt
     1861 ggttgaggag aacggtatac tatctaatga ggagaatgcg atgttgattc aacattatga
     1921 aagctgtcac aagcaaattg ggggcaagat cagaattgag caaatgataa aattgataga
     1981 ttatttggaa aatagagact ggatgaaata atcagtaaga tatcattacc cgtgtcattc
     2041 acttctagat tatggatcca tttcatagtc aattggtgag tcgaatctta cccacattca
     2101 ttggatcaat tagattcctt aatcttgaaa tcaactgcct gtgaatggga acaatctcct
     2161 attgccatgt ctcgttcatg catagaagaa tttcatcaat tcacatcgat aatcaaaaac
     2221 tttaacaata tgtttagttg aaaataaagg agtgattggc agaaccgaaa catattctaa
     2281 catgctccat agttatagcc gtggttattt tattgggcgt tcattgttct acttccaaag
     2341 tccatgcccg ctcagaatgg gaaacacgag cagaggcgca gtatgaattt gctaaatttg
     2401 ttgataaatt gcagaaggaa ataaaaacca aagatccaca agcattcact gattataaga
     2461 aagtaattgt tcaattattg ccagaattta ggcaaattat tgaccggtta gatccgttgg
     2521 tgaaaattga attttgtaag ttagcaagta cctcatcagt atttccagta gattgtgaat
     2581 tgctggatca atcgttgcca cttcctactt cacaatctaa cgctatagga aattcttcag
     2641 atccatgctc tgctcttcag actgactcat acttgactgt attagaaatc aatactttgc
     2701 aaattcaatg cgacaagaaa atttccaacg ctaggaatcc agaaaatcag agaggagaag
     2761 aaatatccaa tgaaacaagt acaacacgag caaaggaaag gctgaatgta ggttgtgata
     2821 ctttactgtt actctcaaat gaaactcaaa atatattgaa gaatatgaat aaagatattg
     2881 catcatgtta cactatggat tcaaagcgaa attaatttta cttcgatgag ataaccatga
     2941 aaatcgttgg tccaggctgc gttagataag gcgcagaatt gaaactgaac gaaggtccag
     3001 aaaatgagga ctaggctaag tgatctgctc taatatccat tctctaaatt ttgcaatggc
     3061 aaattcttca gattgcttaa ggaatttagg atcttttaga ttccattgac tttcaggaag
     3121 gccatcaaaa aactcttgca tacacaaggt aaatctaagg cgtaaatttc ttgggttctc
     3181 aattatacta taacgatgta gaatgttagc aatttgtcca aatacagaat tatagtctcg
     3241 cttaaatggc tctatttcga aaacctcata caacattgaa gttattgaat ccaagtcttg
     3301 tttgataccg atcaacgtat ataattaaca tagagtagtt ttttacgatt tatatcactt
     3361 tgactccacc tttaggtaat ctgtaggaaa ttccatttct gcttatagtt taagtgagaa
     3421 tgcaactcaa ggccaataat gcaatttagc acaataattt taaaattgaa cttgagttga
     3481 atacaatttc attattctcc tgcatgtgta agacaatatt caagttcaaa taattgcttc
     3541 cgccaaaata agaaacattt cgtagaagtt aatgatagca gatttaattt tgaacttaaa
     3601 cttggatgac agataactta aactataaga aataatgaat aatgtaagca aatatgcaaa
     3661 gtataataca agatgaagga aaacatcctg tagatagcac cttattcgtg ctttgcatat
     3721 atcctacgtt ccatatttgc aaattttact caaatagtga cccatttgtt agatgagctt
     3781 gtcaaagaca gagtagacgc caagaagcct cgcgaagagg gattatctta tactattgat
     3841 aaacttcgag cgtttgacag agaaaacttc gagatcatag cacctatgat tgacgtagtt
     3901 aaaatttata gcgcatttcc attattaatt ccagattcct ttcttaagaa aaaaatacaa
     3961 ttttatcatg gttttgatat tatggtttcg accggaagta cgcttacaga atttgcgata
     4021 tcagaagatt cttttgacga gttccttaag gagtctgctc gagtcgggtt tgatataata
     4081 gaaattggtg agaataatat tgatttagat aaagatagaa agaagaggtt agctgaatca
     4141 gttcttgctg caggcttaaa atttaattgg aaaataggaa agaaagatcc tcgccatcag
     4201 cttcggattg acaatgcact gtcgaaggtc gaggaagcac ttagtgttgg tgcgaagaag
     4261 gtaattcttg aagccaacga aggtatcaat gtaggaatat ataatgaaaa tggtgcgatt
     4321 agatggaact atctagctgc tcttaccgca aaataccctc caaacacttt catttttgaa
     4381 gctccccttg aatcccagca atctgcgctg gtagccgaat ttggtcaacg tgtaaatctt
     4441 gctgaaattg ctatggacca tgttgtttca atagaatctc agagaagagg gtttctttct
     4501 aaatcctcat ttggcatgtc gttcatgcag aaggaaattg gaggtggtcc tgcttcaaag
     4561 ttcatttttt atttaataaa tacaaaatat ccaattgaac agagcgattt aattaacata
     4621 actcatctac ctagaagaac aattcagagt gcaatcgaag acttgagaga ccaaggattc
     4681 ataatcgaga ggaacagctt ggatgatact agaagaaagg tgtactatcc agttcaatca
     4741 gaatggcttt gaactagtca tatctaggaa cctcattgat tctaaaatgc gaataatcat
     4801 agatcattat tttacctatc tgcaatactt agtcgaaata tgtataaatt gatccttatc
     4861 aacttgccaa ttcaagtctt ttgtgattaa taaggccttg tatccattgt gtatccacta
     4921 ggatttctgg ccgggcatag gagctttctg atatgtatgt agatgtcatt ttacactacc
     4981 aacctactat tttgttgcat ttgtagcatt aggagctgtt gttaatgtag cattagctgt
     5041 tgttgttgta gtgttaccgg atctaggact ttcgtctatt gtctgtagtc ctttgtcttt
     5101 aagaacttca tttagaagct ttaaatcata gatcccagat aagtctggtc gcgttttacc
     5161 aaggaatcca atatcaaatg catcatttgc agacttgatc aatgatgata ttataggatc
     5221 ccaggtcaac tccagtcttg gtaaagattg ctttagaaca tcctctggaa ttatctgtcc
     5281 agtaagtttt ttcaactcaa tattgaattg ctttattgct tcgtcttgat gagtgttgat
     5341 ccactgtgtt tcgtcgacat gactagccaa aagtttcttt atgacatccg gattattttg
     5401 aaggtaatct gttcttacaa gaatgttcgc agttacgaac ttaccatctg gccacaagtc
     5461 tctctcatct aggaacagtc ttgaattagc ttctttaata aagcgttctc cccaaggttc
     5521 tggcacccat gctccatcaa cttgtttctt tagtaggagt gtcaagatat ctgcattttt
     5581 ggcaggaacg acttccacat ttcctccatg ttcttttgtt tggtatccat tatccaaaag
     5641 atactttctg agagctacat cctgagtatt ccctagctga ggtgaggcaa actttttgcc
     5701 tgcaaagtcc ttgggtgatt gaatccctga atcattcctg acaacgaata cagctcctcc
     5761 acttgatgca cctgccacta tcctcacgtc ttttccacct gatacgatat atccgtttat
     5821 tgcgggattt ggacccacat atgtggcatc aatttgttta gcaaataacg cttcgatagc
     5881 cgagggtccc gcattaaaga tgaatcgttt gatctctatg ttgtccccca aggacttttg
     5941 aaaggctcca tttcctaccc caattactgc ttgggcatga ttaatgtttg gaaaaaatcc
     6001 aagtctaaga actttctttt ccgttccttg cgaatatgca tgatttgaaa tggagagccc
     6061 tgcaatgagt cctataacaa ttaatgcagt actaactatt gcgatagatg attttctgat
     6121 catagattct ctctctgaat aattgcatat ttcagtcctt gtaaatatgc ataaattgac
     6181 agttatgtgc ttacaatgct attaaaaaac atgaacagga atcatttcat cgtacccttt
     6241 aatattgaac aagtcatagt ctaatttctt atagtcaagc ttgaactctt atcttgatac
     6301 taatcagagg cgataaatgt cgtataggta caaacgagaa taaggaaagt aaagtaaaat
     6361 caaatgaaca atacaaggaa tgtttaatta gaaaattggc aaaaacctt
//
LOCUS       DASSIK010000207         2751 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1345250, whole genome shotgun sequence.
ACCESSION   DASSIK010000207 DASSIK010000000
VERSION     DASSIK010000207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2751)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2751)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2751
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1345250"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..261)
                     /locus_tag="VFI64_03870"
     CDS             complement(<1..261)
                     /locus_tag="VFI64_03870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242460.1"
                     /translation="MSGVGHAADKAGLKKYEIPATNDPNLKIEIVYRGNYTPGLRELN
                     QFTPVTQFAFLGNNDILMLSKNDGKVLRVLNHKLISEPLLDVN"
     gene            920..1123
                     /locus_tag="VFI64_03875"
     CDS             920..1123
                     /locus_tag="VFI64_03875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242461.1"
                     /translation="MSETFTFERGKIDHILSDLASLMLYFKDLRDKNLIGEDILERIV
                     TIYEHLHTAVVNSRLDNDKLGKQ"
     gene            1268..1540
                     /locus_tag="VFI64_03880"
     CDS             1268..1540
                     /locus_tag="VFI64_03880"
                     /inference="COORDINATES: protein motif:HMM:NF017917.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaB family protein"
                     /protein_id="HET7242462.1"
                     /translation="MPKTKSSTNRRKSEIDTRLSTRTLKQIDSLPEHAQHIYKKVHAS
                     ALRQYQDPEKRRGGKSQSVEEVAHKAAWAAVKQKYEKKGEKWVRKD"
     gene            complement(1802..2320)
                     /locus_tag="VFI64_03885"
     CDS             complement(1802..2320)
                     /locus_tag="VFI64_03885"
                     /inference="COORDINATES: protein motif:HMM:NF024304.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HET7242463.1"
                     /translation="MANSSPNEASGGPPSLNSTEIKKLLSMTLIANLATLDDDGGIHI
                     VPMWFLRQGNKICIPTSRHTRKYKNLRARPRASVMIDISRAGLNLKGVLIRGRVEFVE
                     GEEAQNINRAIHLKYVTQEGLSDTYVASYLSKGDDITVMVHMDHLINWNLADSKAGKA
                     LSAGGWSRPLDA"
     gene            complement(2469..>2751)
                     /locus_tag="VFI64_03890"
     CDS             complement(2469..>2751)
                     /locus_tag="VFI64_03890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242464.1"
                     /translation="YSTMETNSHRSEFEDDLLVQRLGEAFREARENGKMHVDVDEFHE
                     CYGEPEPNATLEVLKNQGVKEGIIGIDNKQIRPTPLGIKRCKLDSSFYS"
BASE COUNT          854 a          562 c          497 g          838 t
ORIGIN      
        1 attaacgtcc agcaatggtt cggatattag tttatgatta aggactctca gtactttgcc
       61 atcattctta cttaacatca aaatatcatt gttccctaaa aatgcaaact gagtgactgg
      121 agtgaattga tttaattctc gtaatccagg tgtataattt ccccgatata ctatctctat
      181 tttcagatta ggatcattag tagcgggtat ttcatatttc ttcagacctg ctttatctgc
      241 ggcatgccca actccactca ttaataatag acatatgact agactaaaaa aaataaacaa
      301 aatggatgaa gcaaagttaa ggaccaattg ttacgacttg aatgtcaata acttactttt
      361 taatatgtcc attttttggt acgcccggag atgtaaaccg atatccatcc tatcttagca
      421 accatattgc tgggcccaat ccttagttga aaattcactc gcacccaaaa aattaagcta
      481 atacttcagc attgccagag gtcaaaatcg caaaatcgcc ttgttcaaag aagaatccaa
      541 tctttcacac aatactaatc caatcattct gccgtaaatc ccggccttct gaccatcatc
      601 ctcatttacc atggcacgag ttccaattcc acaatttgtt gctacaaatt gcttcctgta
      661 aataactatc ttgattagtt tcaggagtat tcactagtgc tagaccaatt cttacattat
      721 tgatatctaa agtatcttca tctacaactt tggttaccgt tcaaaattca tagacaattt
      781 aaataacccc gctactttag ttcagttcca gtttggaaat aacaatatat tacattccat
      841 tttgccttga agtcagtgac aatactcgca acatttttcg agacaaggca aggaaagcgg
      901 atcataagga gatgaggtta tgagcgaaac ttttacattt gaacgtggaa aaatagatca
      961 tattttatct gacctcgcct ccctcatgct atactttaag gatctccggg ataaaaatct
     1021 gataggcgaa gatattcttg aaagaatagt cacaatatat gagcatttgc atactgccgt
     1081 tgtcaacagc agattggata atgacaaact aggtaaacag taagaaaata gttcctacgc
     1141 tgagaaagcg gtcgaattcg taatgtctca gtttgaatac ttgaagttta agctatccac
     1201 tttcaaaatg cttagtcatt tcttgatcaa ttgcattgga tatataccat ttcgtatatc
     1261 ataatacatg cctaaaacta aaagttccac gaaccgaaga aaatctgaaa tcgatacaag
     1321 attatcaact agaactttaa agcaaataga ttctttacca gaacatgctc aacacattta
     1381 caagaaagta catgcaagtg ccttaagaca atatcaagat cctgagaaaa ggcgtggcgg
     1441 taaaagtcaa agtgtagaag aagtggctca taaggcagca tgggctgctg ttaaacagaa
     1501 atatgagaaa aaaggcgaaa agtgggtgag aaaggattaa tttatgcgga gtagcaatat
     1561 ggaaaaattg atatcctggc gaagatccgg ttgtcatcat gtaggtctac tcagtggcta
     1621 atgatgcgcc tcactgtcta aaattggata ggcatatcaa aattattatc gggaactagt
     1681 caaaacttta ttcctagttg ccaatcggta tttcatcctt gttcccaata gcatttttaa
     1741 atgaccagga gtcggcgcca agtttaggtc aatcaccgct aatcaatctc taccctatac
     1801 atcaagcatc aagtggacga gaccatccgc cggcactaag ggcctttcca gccttagaat
     1861 cggctaggtt ccagttaatt aagtggtcca tgtgaaccat cacagttatg tcgtcacctt
     1921 tcgagagata tgaagcgaca taagtatcgc ttagcccttc ctgcgtcacg tatttcaaat
     1981 gaatagcgcg attgatgttt tgtgcttcct ctccttcaac aaattccaca cggcctctga
     2041 ttagtacacc cttaaggttc aagccagctc gggaaatgtc aatcattact gaagcccgcg
     2101 gtcttgctcg taagttcttg tatttgcgtg tgtgtcggga agtcggaata cagattttgt
     2161 taccttgtcg aaggaaccac attggaacaa tatgtatacc accgtcgtca tcgagtgtag
     2221 ccaaattagc tataagggtc atcgaaagta gttttttgat ctcagtggag ttaagggacg
     2281 gaggcccgcc tgaggcttca ttaggggaac tatttgccaa actctaactc ctggtacaat
     2341 tgccaatcaa agagaagcat gttccttata aaataatcaa cttaataagt caatattttt
     2401 tgtttcagtg tatctgaata gtccttgaca agttttaaga ggcgacttac agtctggggc
     2461 tgtattgttt aagaatagaa tgaactatcc aatttacatc gtttgatacc taatggcgtt
     2521 ggtctaatct gtttattgtc tattcctata attccttcct tcactccctg attcttcagg
     2581 acttctaacg ttgcatttgg ttcgggttcg ccataacatt catggaattc gtctacatct
     2641 acgtgcattt ttccattctc gcgtgcttcc ctaaaagcct caccaagtct ttgtactaac
     2701 aaatcatctt caaattctga acgatggcta ttagtttcca tagtagagta t
//
LOCUS       DASSIK010000208         3531 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1429207, whole genome shotgun sequence.
ACCESSION   DASSIK010000208 DASSIK010000000
VERSION     DASSIK010000208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3531)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3531)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3531
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1429207"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            372..542
                     /locus_tag="VFI64_03895"
     CDS             372..542
                     /locus_tag="VFI64_03895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242465.1"
                     /translation="MTKAKDNLINDNNNVLQKMKRYFDIIDDDSEILQYFKSIGIKIE
                     ELEKPKIATTSL"
     gene            719..1615
                     /locus_tag="VFI64_03900"
     CDS             719..1615
                     /locus_tag="VFI64_03900"
                     /inference="COORDINATES: protein motif:HMM:NF019887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIB family hydrolase"
                     /protein_id="HET7242466.1"
                     /translation="MPLRISVIISDYDGTLCPTASLKGLNNQIPPDLEKVLWDISAKI
                     PVCILSTKDFGFLRKKVQFAKVVSCIMGLEIFELATLDSRSANVDIDLVPNSKNYLGA
                     KGKFSNVISQYRLSGVNKLVKNSVLLKKLSDKIEKEFQDISIEPKFNYVDGILAAISL
                     DYRQIQKWEHYKTNIEPYVLNSIQQFVLSLPNDLFVQTYSDHPFIDIYSMHLDKGQAI
                     DAISLMLNLSKVQKVLYLGDSENDNPAFQKADLSIGIRSDERVKTKLDSDYLIQFNEL
                     TPFLQKLYAEDFVFNRMSQNIQ"
     gene            complement(1625..1945)
                     /locus_tag="VFI64_03905"
     CDS             complement(1625..1945)
                     /locus_tag="VFI64_03905"
                     /inference="COORDINATES: protein motif:HMM:NF014470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HET7242467.1"
                     /translation="MITPSEVILQLGGLGGIEWVIIIGIVILLIFGVRKIPELAKSFG
                     KAQGEYEKAKIEMRKEVERIKHGDDTEREKLESIAEKLKIDYTNKTDEELRKAIEADI
                     GKGK"
     gene            complement(2167..2757)
                     /locus_tag="VFI64_03910"
     CDS             complement(2167..2757)
                     /locus_tag="VFI64_03910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvoyl-dependent arginine decarboxylase"
                     /protein_id="HET7242468.1"
                     /translation="MNEKTVHVESLSDPMHYVPKAMFFTKGKGIHKEYLTSFELALRD
                     AKISDLNIVSVSSIKPPKCKIVSIQEGRNFLLPGQISFAVMARASTSEPNRLIAASIG
                     LANPAYEDQYGYLSEHHSTGETAQRAGDYAEDMAMEMLATTLGLPSDPSLAWDEREEQ
                     WRLSGKIYKTQNFTQSAEGHKDGLWTTVISAAVLIL"
BASE COUNT         1098 a          669 c          607 g         1157 t
ORIGIN      
        1 ctgtcatctt tatcgtatat ttcatggcaa aaaaggaagt atccggtgca aagtatcttt
       61 ttttgacgtc atatttggaa aaaccatttg ttttatgagt ttcatcttct caaagacaag
      121 gtcgatataa ttaaaaactc aattcttgat tgcgtggtac tagacatctc gagagcgact
      181 catctagtga acttagtcat cacactgatt ggtgtgaggg atttatcttc ttcctatgta
      241 atagtcaaat gtggaagaaa tactgaaaat gcagaccctc tgacaagatc catttagaat
      301 gatacttttt tgttcgaagt tgacaagatt tagctaatta tcttaactac tatacaatag
      361 acggctaacg tgtgaccaaa gccaaagata acttaatcaa tgataataat aacgttctac
      421 aaaagatgaa gcggtatttc gatattatag atgatgattc tgagatatta caatatttta
      481 aaagcatagg gatcaaaata gaggaattgg aaaagcctaa aattgctact acctctcttt
      541 agttggctat ttagttaaca ttttcatttt tagctcgaag ttttcagtcg aatcagaatt
      601 ttatgcaatt gtttctcacg attatttact atggacatgc tgacatgaca aatatcacat
      661 taacttgaac ccaacttgct aaggtttagt aaatgcagtc agtaaataaa taacaatatt
      721 gccattgaga atttctgtaa ttatatctga ctatgacgga acgctatgtc ctacagcttc
      781 tttgaaagga ttgaataatc aaataccacc tgatctggag aaagtattgt gggacatatc
      841 ggccaagatc cccgtttgta tactttccac taaagatttt ggttttttgc gtaaaaaggt
      901 gcaattcgct aaagttgtat cttgtataat ggggttagag atctttgaac tagctacctt
      961 agattctaga tctgcgaatg ttgacattga tctagtacct aatagtaaaa actatctggg
     1021 tgctaaaggt aaattctcaa atgttataag tcaatatcgt ctgtcaggcg tgaataaatt
     1081 agtaaaaaat tcggtgttgt tgaagaaact atctgataaa attgaaaaag agtttcagga
     1141 tatatctatt gaaccgaaat ttaattacgt ggatggaata ctggctgcta tttcactaga
     1201 ttacagacaa atacaaaaat gggaacatta taaaactaac atcgaaccat atgtactgaa
     1261 ttctatccaa caattcgttc tctctctgcc taatgatctg tttgtccaga catattctga
     1321 tcatccattc atagatattt attcaatgca cctcgacaag ggtcaggcaa tagacgccat
     1381 ttccctcatg ctaaacctta gtaaagtaca gaaagtactt tatctcggag actcagaaaa
     1441 tgataatcct gcattccaga aggcagatct ctctataggc attcgttctg atgaaagagt
     1501 gaaaacgaag ttagattctg attacctaat ccagtttaac gagttaacac cgtttttaca
     1561 gaaactttat gcagaagatt tcgtttttaa ccgaatgtcg cagaacatac aatgattatt
     1621 atgttcactt gcccttcccg atatctgctt ctatcgcttt acgcaattcc tcatcggtct
     1681 tgtttgtata atctatcttc aacttctctg ctattgactc tagtttctct ctctctgtat
     1741 cgtctccatg cttaattctt tcaacttctt tacgcatttc aatcttagct ttctcatatt
     1801 cgccttgtgc tttgccaaat gacttggcca attctggaat tttcctaacc ccaaaaatga
     1861 gcagtatcac aattccaatt ataattaccc attcaattcc tcccaatcca ccaagctgta
     1921 aaatgacctc tgagggcgta atcatctgta attacctatt cgtgtgacac caatttaagt
     1981 ttggcgccaa tcaactcccg aggatgttgg attttaataa gcaatttcgg tggtacagtt
     2041 attgtgatta agatcggttc acaaatatca atttgtcacg ctctaaatgc ttttttcgta
     2101 ttggattttc tctactgcaa tctattctgt ggccaataat tcactatcaa ggtacgaaag
     2161 taaacatcat aatatcagga cagctgcgct aattactgtt gtccaaagac catccttgtg
     2221 cccttcggct gattgggtaa agttttgtgt cttgtatatt tttccagaga gtctccattg
     2281 ctcttcacgt tcgtcccatg caagtgaagg atcactaggc aatcccaatg tagtcgctag
     2341 catttccata gccatatcct ctgcgtagtc gccagccctc tgggcggttt ccccggttga
     2401 atggtgctct gagaggtaac catattgatc ttcataggcg ggattggcta gaccaataga
     2461 ggcagcaatt agtctattgg gttcactggt cgaagctctg gccatcacag caaatgatat
     2521 ctgaccgggt aaaagaaaat ttctgccttc ttgaatgctc acgatcttac atttaggagg
     2581 ctttatactt gacactgaaa ctatattaag atcggatatt tttgcgtcgc gcaaagctaa
     2641 ttcaaagctt gtaagatatt ccttatgtat tccctttcct ttggtgaaaa acatagcctt
     2701 tggcacataa tgcatgggat cagatagcga ctctacatgt acggtcttct cgttcattac
     2761 ctttgaactt ctattaataa atattaacat tacgcagtga cataaggcta ttgtcatctt
     2821 caatacgcaa cttccagaag agatgggttg aggtatagca tgatatcgtt caaagtacaa
     2881 tttccaaatc attaatctat gaagtaatga tgtaatggag ggatatatgt gtgagataca
     2941 aggctaaaat gaagtgatat ggtgtctcga taaaattcac aatatctaag aaaagagtct
     3001 aactttgaga ttgatacaaa cagtacgcct ccaatacttg gtcgggaagt tcatttaatg
     3061 ttactatgac agggaacatg gtagatgact cgttcatttt gtcaatatat atcttcgtct
     3121 ttgtgacttg tgacttgatc atctgcaaat tcgcacatat tggcttctaa tgatattttt
     3181 ccaatgctca caatcaatac ctaaccaaat ttatccaaac tttgcaacga ccgattactt
     3241 ttaaaatatt cgctcttcac aaatattgaa gaggaacatt tcaaagttcc tccattctaa
     3301 ctttgaagat aaaagcttag gacgatatcc ttgatttaag gccattaata gaataatgag
     3361 tttgtcgatt cttgtaaatc catttgctaa acctgacacc aaaatttaca aaaacaataa
     3421 ttcaatcgct gcaaaagaat aaattccaca atatttctga gattcggcca tactattgct
     3481 gtagaaaatg ccagcaattg cccgatctta taaaaaagga tttatcttat c
//
LOCUS       DASSIK010000209         2392 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_434403, whole genome shotgun sequence.
ACCESSION   DASSIK010000209 DASSIK010000000
VERSION     DASSIK010000209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2392)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2392)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2392
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_434403"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(148..1014)
                     /locus_tag="VFI64_03915"
     CDS             complement(148..1014)
                     /locus_tag="VFI64_03915"
                     /inference="COORDINATES: protein motif:HMM:NF022834.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2877 domain-containing protein"
                     /protein_id="HET7242469.1"
                     /translation="MTGQNSIRGHMISVFDSSANIKTVDNRLFVITNNIVRSPITLNV
                     IQVGATHSFKKFMKFGSIIRERRDQIVIDNDVTIGVRKSRLFENNLGFITKRSLSKFR
                     DKFDSIFPSMIKLVRPGCLLSPDITTRGLLPEQIRAININSKKTDDDAAFAKFMARSL
                     GKLCGRGPGYTPAGDDFISGFLMMFNWCAKCLEFERIILPGKYSTMTSWTSYKLMEYS
                     QECLCDEEIQAMVNSIALGRANECSKKMIPLSFRGHTSGIDLVTGMTCALYTLIDRNF
                     GTSSLHKLELPS"
     gene            complement(1285..>2392)
                     /locus_tag="VFI64_03920"
     CDS             complement(1285..>2392)
                     /locus_tag="VFI64_03920"
                     /inference="COORDINATES: protein motif:HMM:NF012758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242470.1"
                     /translation="TSIINGKGIGFSNVLRPGPVGIIAAAGTGLQEVSSLLDQCDIGV
                     KYGLGVGANDPKEKIGGLMMLESLKVLEELPDIEIMAIVSKPPSLRVKNMIIDYIVKH
                     GKKKYVLAFIGAGHDGSLPNSIRSKIVQVNTLASAVFAIASLTSNQQYKLSLVRLHLK
                     PEILQNAVAKEWRGLGEQQKYIRALYTGGTFAYETQVILNGVLKNLYSNAPTGGTKKL
                     PSASKSKKHSILDLGEEEFTQGRPHPMIDPTIRRLRLVEESQDPEVGVILMDFVLGYG
                     SNPDPVGAVLNEIAQVKATARKSNRYLSIVTHVCGTKRDPQGYDESIRKLENAGALVF
                     PTNALAAIASAQIISRGKLDLDRIYSSSFMGRMD"
BASE COUNT          678 a          525 c          411 g          778 t
ORIGIN      
        1 ttaacgaatg ttggcaactt tttcataatt cataaaatta gaaaattctg acatgtacag
       61 ccaaaacaaa ataagccaat tgaaaccgag ccagaaccca aatcaagcac gaatatcaat
      121 ttaagttcgt tcattcattc attatgttca tgacggtaat tcaagtttat gtaatgagct
      181 tgttccaaaa tttctatcaa taagagtgta aagagcgcat gtcattcctg ttacaagatc
      241 gataccagaa gtatgcccac gaaagctgag cggaatcatc ttcttcgagc attcgtttgc
      301 tcttccaaga gctatcgagt ttaccatcgc ctggatttct tcatcgcaaa ggcattcttg
      361 actatactcc attaatttat agctcgtcca tgatgtcatt gtcgaatact ttccaggtaa
      421 aattattctc tcaaattcta ggcactttgc acaccaattg aacatcatta gaaatcctga
      481 aataaaatca tctccagccg gagtataccc tggccctcta ccacatagtt tgcctagact
      541 tcgggccata aattttgcaa aagctgcgtc atcgtcagtt tttttactgt taatatttat
      601 agcccttatt tgttctggaa gcaatcccct tgtagtaatg tctggtgaaa ggagacagcc
      661 tggccttacc aatttgatca ttgaaggaaa aatggaatca aacttatcac gaaattttga
      721 taaagatctc tttgttatga atcccagatt gttctcaaat aacctcgatt ttcttactcc
      781 tatagttaca tcattatcaa tcacaatttg gtcgcgacgt tctcttataa tggaaccaaa
      841 tttcatgaat ttcttaaaac tatgtgtggc accgacttga ataacgttta aggtgatagg
      901 tgaacgtact atattgttcg taattacgaa tagtcgattg tctacagtct tgatattcgc
      961 tgagctatca aagacgctta tcatatgccc tcttatactg ttctgaccag tcaagatatg
     1021 ttcagcaaaa aggcttccta tccagttacc ttcaaaagta ttctttttta tcttaggatt
     1081 gctagttttg taatctgata aataagatta cccctacaaa attttggaaa gtatgagttc
     1141 caacttcgga tccaatttag gtctaggttt ccagtcaact tgaactgctg ttacgttctg
     1201 agtgagaaga gagtgataga ataaatcaag tccgatattt atcacctgta attccgtatt
     1261 cagtaaattt ctgcccttag ccaatcaatc cattctcccc atgaaactac tagaataaat
     1321 cctatcgaga tcaagtttcc ctctagatat tatttgcgcg gaggcaattg ctgccaaagc
     1381 attggttggg aagactaatg ctccagcatt ttccagtttc ctaatgcttt catcgtaacc
     1441 ttgagggtct ctcttcgtgc cacaaacatg agtaacaatg ctcaaatacc tattgctctt
     1501 tcttgcagtt gctttcactt gcgcgatttc atttaacact gctccgactg gatctggatt
     1561 ggaaccatat cccaatacaa aatccatcaa gatgacaccc acttcaggat cttgtgattc
     1621 ctcgaccagt cttaaccttc taattgttgg atcgatcata gggtgcggac gcccttgagt
     1681 gaattcttct tctcccaagt ctagaataga atgtttttta ctctttgaag cggaaggcaa
     1741 tttttttgtt cctcccgtag gggcattaga gtagaggttc tttaatacac cattcaaaat
     1801 tacttgcgtt tcgtaggcaa atgttcctcc cgtatataac gctctaatat acttctgttg
     1861 ctctccaagt cctctccatt cttttgctac tgcattttgc agaatttcag gtttcaaatg
     1921 aaggcggacc aatgatagct tatactgttg attgctagtc agacttgcaa ttgcaaatac
     1981 cgctgaagca agtgtattca cctggactat tttggacctt atcgaatttg gcagagagcc
     2041 gtcatggccc gcacctatga aagctagcac gtactttttc ttaccatgtt ttactatgta
     2101 gtcgattatc atgttcttga cgcggagaga tggaggtttg gaaactattg ccatgatttc
     2161 aatgtctgga agttcttcca acacctttag tgattccaac atcattaacc cacctatctt
     2221 ctctttagga tcgtttgctc ccacaccaag accatatttt actccaatat cgcactgatc
     2281 taagaggcta gaaacctctt gaagaccagt tccagctgct gcaattattc ctacagggcc
     2341 tgggcgcaaa acatttgaaa atcctatccc cttcccattt atgatagagg tc
//
LOCUS       DASSIK010000210         6258 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_434478, whole genome shotgun sequence.
ACCESSION   DASSIK010000210 DASSIK010000000
VERSION     DASSIK010000210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6258)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6258)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6258
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_434478"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..588
                     /locus_tag="VFI64_03925"
     CDS             <1..588
                     /locus_tag="VFI64_03925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase"
                     /protein_id="HET7242471.1"
                     /translation="IAGHILEIHRDVEHAAQPAIEMDLFRKYLAYAKQIEPKLTIEVI
                     NALRDYYMKMRNVDSEGMITVTPRQLEGLIRLATARARLLLQDNVKIEDAERAIYLVQ
                     RMLETAGVDVNTGKVDLGVLHGKPHSEISKLKLFMEVFNGISGQDKNDVEEKNFINEL
                     VKTGKFSEDEARTYIKKAMQNGQIYERRSGFYAKA"
     gene            862..1701
                     /locus_tag="VFI64_03930"
     CDS             862..1701
                     /locus_tag="VFI64_03930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242472.1"
                     /translation="MKLFGQPLIVRSVTMAQQVYGISKVMIPSEFSDAIQLVQQSFPS
                     IDVEEFCEEDYNKSNVSIKGNENLEIPLNTLIHYSKRTNALSIETIMYPWDFLATVQK
                     ILYDEVTEQVISSTASIAETSIIKGPCIIEDGVCVDDFCKIIGPAYLSKDSFIGMSSL
                     VRNCVLGNKTKIGFNCEIGRTYFGGNSKISHQNVILDSVIGENVWFGGYSGTANVLLT
                     RGNIKYAVGKDLVDTGTDHFGAVVGNNCAVGASVIILPGRQVPSDSFIQAGTIFGTAE
                     KKS"
     gene            2047..2301
                     /locus_tag="VFI64_03935"
     CDS             2047..2301
                     /locus_tag="VFI64_03935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HET7242473.1"
                     /translation="MKYRSRTDIVGLILEGANGGASKTKIMYKAFLSYAQLREYLAML
                     LENGLIEYEEGRQTYRTTEKGIRLLQIYNHMSDELVISNK"
     gene            2486..4606
                     /locus_tag="VFI64_03940"
     CDS             2486..4606
                     /locus_tag="VFI64_03940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HET7242474.1"
                     /translation="MRSQLRDLLGLLGFSSLYPPQEHAVSKGLMDGKNMLITTPTASG
                     KTLMGLMGAIRALEGGKKVIYLTPLRALAAEKFIDFKTLQRMQFNDRRKIRVGISTGD
                     YDSSGSELEDTDIVILTNEKLDSIMRHGINWLDRVGVFIIDEVHLLGDRERGPTLEIM
                     LTKIKERYPKAQIIALSATISNSDEVGRWLGCEIIESEWRPTRLVEGIYDYGKVRMNN
                     DVTFEIERSGSSSSAAIDLALQSVKDGGQALIFAETRRRAVSLAGKAAEQISKLFNES
                     SKNLAKRTALQIRDSADAEINKTLSALVAKGVAFHHAGLGPRDRQIVEDAFRTGVIKL
                     VTATPTLGAGVNLPARRVIIASIFRYDQNYGGNVPISILEYKQLCGRAGRPAYDKFGE
                     SILITDSRIDSSEVYDHYVLGSPEPLQSHLMNERSLRIHLLGTIATTLKINKSRLYEL
                     FNNTFFAQQHDQTSINSKLDSVLEYLEQEGLIILKSDHLTATKFGKRTALLYIDPQTA
                     VQFRKNIKSVEVFYSDNIGHILKWIVESNDFYPKLSLRIKDIQHVSTLFTSDEWNLYQ
                     YFIESSNSRSLVALLKWVNEASDTILSGNIGVEPGDMYRMVETAEWLLYSLGEIARII
                     GRIDIVHEINILKLRVKYGIKTELIPLIQFEGVGRIRARALYNRGIVNAEKLAETSES
                     KLAAISKVGPVLARKLKHQVNRHK"
     gene            complement(4743..5714)
                     /locus_tag="VFI64_03945"
     CDS             complement(4743..5714)
                     /locus_tag="VFI64_03945"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008465 - glycerate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycerate dehydrogenase"
                     /protein_id="HET7242475.1"
                     /translation="MLYKPVVYVTRSLQEPGPTLLSKYCHINMNDSVIPISKRQMVEK
                     AKEVDAIVCMLGDKIDSEVIYSAGNRLKLISCYSAGYDHVDLEAATNKEIVVTNTPDI
                     LSETTADLTFALIFAVSRNVVKGDYYVKNAKWKFGWTPDLFLGTDVYGKVLGIIGLGN
                     IGTKVARRAKGFEMDVIYHNRTRRYELESKFGLRYVDFHELLRRSDFISIHVDLNKDT
                     YHMISFDELKKMKNTAFLINTARGKVVKEKDLVRALNKGLIAGAGLDVYEEEPVSRES
                     PLLKTSNAVLLPHLGSATQETRSRMAEMAAMNVINFFRQIGPVHRVN"
BASE COUNT         2094 a         1109 c         1235 g         1820 t
ORIGIN      
        1 attgctggtc acatccttga aattcataga gatgtggaac atgctgcaca accagcaatt
       61 gaaatggact tatttagaaa atatctcgca tatgcgaaac agattgaacc gaaattgacc
      121 atcgaagtaa tcaatgcatt aagagactac tatatgaaga tgagaaacgt cgactctgaa
      181 ggaatgataa ctgttactcc tcgtcagttg gaaggactga taagactagc aacggcaagg
      241 gcaagattat tacttcaaga taacgttaaa attgaggatg ccgaacgggc catatatcta
      301 gttcaacgga tgttggaaac ggccggagta gacgtaaata caggaaaagt cgaccttggc
      361 gtattacatg gaaagcctca tagtgaaatc tcaaagctca agctgttcat ggaagtattc
      421 aacggcattt ccggtcaaga caagaatgac gttgaagaga agaacttcat taacgaactc
      481 gtcaaaactg gtaagttttc tgaagatgag gcaaggacat acattaagaa agctatgcag
      541 aacggccaaa tatatgaaag aagatctgga ttctatgcta aggcatagaa gagatctgtt
      601 gacaatactc acatttttta cttcaccttt gcctaatatt tgaaagcgtt ttcaaatttc
      661 tcataataca ttcttatgta attttcaatt gtacgtcttt agaatagaat ctaactattt
      721 gtctattgta ttcttcgata acgttctatt gcattgtaga tatacatgtt actacatgta
      781 agttcgttga atttagtatt tcataaatct cgtcattacc ttcaagcact ggttaagcag
      841 aatagttgtc cggcatcatc tatgaaatta ttcggtcagc ctttaatagt tagaagcgtt
      901 acaatggcac aacaagttta tgggataagc aaggtgatga tcccctcaga attttctgac
      961 gccattcagt tggttcaaca gagtttccca tctatagatg tggaagaatt ttgtgaagaa
     1021 gattataaca aatctaacgt atccattaag ggaaacgaaa acttggaaat accacttaac
     1081 acattgatac actactcgaa aagaaccaat gcattatcaa tagagacaat aatgtatcct
     1141 tgggattttt tggcgacagt ccaaaaaatt ctctatgatg aggttacaga gcaagtgata
     1201 tcctcgacag catcaatagc cgaaacaagc ataataaaag gaccatgcat aatagaggac
     1261 ggtgtttgcg tagatgattt ctgcaagatc ataggaccag cttatttaag caaagatagt
     1321 ttcataggaa tgagttcatt agttagaaat tgcgtactag gaaataaaac taaaatagga
     1381 tttaattgtg aaataggaag gacatatttt ggcgggaatt ctaaaatctc tcaccaaaat
     1441 gtgatattag atagtgtcat aggtgaaaat gtttggttcg gaggatattc aggaactgca
     1501 aatgtgttac ttacaagagg taacattaaa tatgccgtag gaaaggatct tgtagatact
     1561 ggaacggacc attttggagc agtagttggt aacaattgtg ccgtaggagc ctctgtaatc
     1621 attttacccg ggagacaagt cccatcagac tcttttatcc aggctggaac tatatttgga
     1681 acagccgaga aaaaatcttg atctgcacgt tgcaagggac agccacgacc atgacaccat
     1741 ttcaaatgat gcgagtggtt tgcccttgta acaggtagtt tacaactgca tggattgttg
     1801 ataagtctta gacctagaag ggaaaatcaa ttcttgttaa tgcgtctgaa actattattt
     1861 gaccatttaa gtttactact cacacactac gaattggaga agaaagttgc cgtataaaag
     1921 ccaaatacat tggcagattt gtaaataatc ttagtattga caattattag ataaaaatag
     1981 atccagatta aagaagaaat gatggtcacg cataaatatt tagcaactga ctatgaactg
     2041 attcgaatga aatacagaag cagaacagat atagttggct tgatcctgga aggggctaac
     2101 ggcggagcat ccaaaacgaa aattatgtac aaagcatttc tatcttacgc ccaactgaga
     2161 gagtatcttg ccatgctgct ggaaaatgga ttaatagaat acgaagaagg tagacagact
     2221 tataggacga cagaaaaggg tatacgacta ttacagattt acaatcatat gagcgacgaa
     2281 ctcgttatct ccaacaaata gagttccaga taaaaacagt actgaattgc tcgctgaatt
     2341 cgttgcgagt caagaataac ttttaaactt ttggtataga actcgaaata aagctatttc
     2401 ttattccaga gtcataacat tattctcttt taacagtttg atcatgtcat ggtaaaaata
     2461 tgagaacttc tattaaaatg ggcacatgcg atctcaactt agggaccttc tcggcttatt
     2521 aggtttttca tcactttatc cccctcagga acatgctgtg tcaaaaggat taatggatgg
     2581 aaagaatatg ctaattacaa cacctacagc aagcgggaag acgctcatgg gattaatggg
     2641 tgctatcagg gcgttagagg gagggaaaaa ggtaatttac cttacaccat taagagcact
     2701 ggcagctgaa aaattcatag atttcaaaac tctgcagaga atgcaattta acgatcgtag
     2761 gaaaatacgt gtaggcattt caactggtga ttatgattct tctggatccg aattagaaga
     2821 tacggatatc gtgatactca caaacgaaaa actggattca attatgcgtc atggaataaa
     2881 ttggctggat agagttggag tatttattat cgacgaagtt catcttctag gagaccgcga
     2941 acgggggcct actcttgaaa ttatgttgac aaagataaaa gagagatatc cgaaggcgca
     3001 aataattgct ctgagtgcca ccatctcaaa ttcagatgaa gttggcagat ggttaggatg
     3061 cgaaattatt gaaagtgagt ggaggccaac cagattggta gaaggaatat atgactatgg
     3121 taaagttcgg atgaataatg acgttacttt cgaaatagaa cgaagtggaa gttcaagctc
     3181 ggccgcgata gatctggcac tccagtctgt gaaggatggt gggcaagccc ttattttcgc
     3241 agaaacaaga aggcgtgccg tatctcttgc cggtaaggct gccgaacaaa tctcgaaatt
     3301 atttaacgaa tcctcaaaga acctagcgaa acgaactgca ttacaaatac gagatagtgc
     3361 agatgctgag attaacaaga cactttcagc gctagttgca aagggagtgg catttcatca
     3421 cgctggattg ggacctagag atagacaaat tgtagaggat gcgtttagga cgggtgttat
     3481 aaaacttgtt accgcaacac ctacgctagg ggcaggggtg aacttaccag cgagaagagt
     3541 gataattgca agtatttttc ggtatgatca aaattacggg ggaaatgttc ctattagcat
     3601 cttggaatac aaacagctgt gcggccgtgc gggaaggcca gcatatgata aatttggaga
     3661 gtccatactt attaccgatt caagaatcga ctcatcagag gtttacgatc attacgtatt
     3721 gggcagtccc gaaccacttc aatctcactt gatgaacgag aggtctttga gaatacattt
     3781 gttaggtaca atcgctacaa cactaaaaat taacaaatcc cgactgtatg aattattcaa
     3841 taataccttt tttgctcaac aacatgatca aacgagtatt aattcgaagc ttgactctgt
     3901 attagaatac ctagaacagg aaggcttaat cattttaaaa agtgatcatt tgactgctac
     3961 taagttcggt aagagaacgg cacttcttta tattgatcca cagacagcag tgcaatttag
     4021 aaaaaatata aaatcagtag aagtttttta ttcagacaat ataggtcaca tcttgaaatg
     4081 gatcgttgaa tcaaacgact tttatccaaa attgtcattg agaatcaagg atatccaaca
     4141 tgtaagcacc ctttttacct cggatgagtg gaatctgtat caatatttta ttgaaagttc
     4201 taactcaaga agtctggtag cactcctaaa atgggtgaat gaagcaagcg acacaatact
     4261 atctggtaat atcggagtag agccgggtga tatgtacaga atggtcgaaa ctgctgaatg
     4321 gttgctctat agtttaggtg aaattgctag gattattgga cgaatagaca ttgtacatga
     4381 aatcaatata ctcaaactaa gagtaaagta tgggataaaa acagagttaa ttcctcttat
     4441 tcaatttgaa ggagttggaa gaataagagc aagagcatta tataataggg gcatcgtaaa
     4501 tgccgaaaaa cttgcagaaa cttcagaatc caagttggca gctatttcaa aagttggccc
     4561 tgtacttgct agaaaactaa agcaccaggt aaatcgacac aaataatagt tctatttcac
     4621 tacactacat ttctaaataa ggtctgacaa atttctttgc attttaaagt gtatggtatg
     4681 gcccgacagc tttttggtca ttggtagggt atttccagag taaatgataa tgaccaatga
     4741 atctaattga ctctatggac tggtccaatt tgtctgaaaa aatttatgac attcattgct
     4801 gccatttctg ccattctaga tcgtgtttcc tgggtggcac tacctagatg cggtaacaat
     4861 acagcgtttg atgtctttaa taggggactt tctctagaaa caggctcttc ctcatataca
     4921 tccaatccag cacctgcaat caacccttta ttcagagcac gaactaaatc tttctcctta
     4981 accaccttcc ctctggcagt attgattaga aatgcagtgt tcttcatctt cttcaattca
     5041 tcaaatgaaa tcatgtgata agtatccttg ttcaggtcaa catgtatcga tataaaatca
     5101 cttctccgga gtaattcatg aaagtcaaca tagcgtaacc caaatttcga ttcaagttcg
     5161 taccttcgag ttctattatg atatattaca tccatctcga aaccttttgc acgtcttgca
     5221 accttcgtac ctatattacc aagaccaatt attcccaaaa ctttgccata aacatcggta
     5281 cctagaaata gatcaggcgt ccacccaaat ttccatttgg cattcttgac atagtaatca
     5341 cctttgacaa catttcttga aaccgcaaaa attaatgcaa atgtcaaatc agctgtcgtt
     5401 tctgataaaa tgtctggcgt attggtaaca acaatctcct tatttgtggc tgcttctaaa
     5461 tcaacatgat catatccagc actataacag ctaattagtt taagtctatt tcctgccgaa
     5521 tatatcacct cagaatctat tttatctcct aacatgcaaa caatcgcatc aacttctttc
     5581 gctttctcta ccatttgtct tttagagata ggtattacgc tgtcattcat attgatatga
     5641 caatatttag aaagcagagt aggaccaggt tcctgcaagc ttctagttac gtacactacg
     5701 ggcttgtata acattcaacc tctggttagt aaaattcttt aaccattaaa ctttttgata
     5761 aaaaggtatg ggcacaggaa atatgtgcag tgtaaaaatg actaccttga ttgtgcaaca
     5821 atggcgatta tggcgctcac tattattcta actgcttacg agtatcatga atattgcttc
     5881 tttacattga aaaatcgtat ggcccaattc aagccttaga cgatcctctg gcatacttta
     5941 ctacaccaaa ttagatttct taaaaatcag aatgcgtcgg ataaagtcac cgtaattttt
     6001 gattccttcg caaattcccg accttataaa tagtatattg attgttcatt ggcagatagg
     6061 ttagtagaca gattttagag aatttatgga taagatattg gactccgaat ctgtttaatt
     6121 ctatagtcaa ttgtattgcg gatttgataa ataatgatcg ttatagagct gccatacttg
     6181 tttctaaata tatagaaatt aatataacta ctataaaatc aaccgatagt taagtctaag
     6241 aagctggtaa tgatcatg
//
LOCUS       DASSIK010000211         2923 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1429951, whole genome shotgun sequence.
ACCESSION   DASSIK010000211 DASSIK010000000
VERSION     DASSIK010000211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2923)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2923)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2923
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1429951"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1303)
                     /gene="glmS"
                     /locus_tag="VFI64_03950"
     CDS             complement(<1..1303)
                     /gene="glmS"
                     /locus_tag="VFI64_03950"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004360 - glutamine-fructose-6-phosphate
                     transaminase (isomerizing) activity [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HET7242476.1"
                     /translation="MCSIIGYSGVGKAAPLLVGGLQKMEYRGYDSVGVATLNSGKLLI
                     RKGIGKVEEVNKSLGLKEMAGQLGIGHTRWATHGGIIDSNAHPHSACTTNLAIVHNGV
                     IENHQELKEELLKKGHVFKSETDSEVIAHLLEHYWALKCDIKEAMMNTCNRLRGSFAF
                     VAVFDDSTLCAARYDEPLIIGITAGGYFISSDVLGFLDYTDRAIFLDNRDIVLLEGNN
                     LSIIDFDGEKVERTPTQVAWELADSDKGKYAYFTLKEIYEQSHTIFKSMQQKKESVET
                     FCDIITNARDVFVTGSGTSYHSALLAKHILSKYSQIRVETVVSSEFQYSSELLDENSV
                     LIAISQSGETADVLQSVKAAREKGAKVLSIVNVTTSSLARLSDCFLEVKCGPEIGVAA
                     TKSFTSQLSIIYYIADTIGGNLTGISTNRMELSNAIEKSLEL"
     gene            1792..2343
                     /locus_tag="VFI64_03955"
     CDS             1792..2343
                     /locus_tag="VFI64_03955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242477.1"
                     /translation="MESSQSNEDIAKQIILKEINNVSTNSLIIKENGCSACHILFNLM
                     DNMQISESDASDLLSQVLSDDPKLNDCFIEMVEKIHMKERMMGIPFSIKTREAKDKYI
                     ASNFKNLLAELSSDLINYGTDIVLRKLLASSIALQLAQNIGIDYHAATEELYYYMRNN
                     DQQTNESILEFINNFYSRVYKKD"
     gene            2581..>2923
                     /locus_tag="VFI64_03960"
     CDS             2581..>2923
                     /locus_tag="VFI64_03960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242478.1"
                     /translation="MKKQKKGPSDVSSTTIFRMVFVPLVSIIVMTLAVTGFGIDQNSS
                     AKVQGSDNATNINNNNNTNLGSNNSTANSTAPSTITLPVSKGFVDGKVAYFIATDASS
                     KQIVSSVSNTTS"
BASE COUNT          904 a          598 c          488 g          933 t
ORIGIN      
        1 caagttctaa actcttttct atcgcgtttg acagttccat tctatttgtt gaaatgcctg
       61 tcaagttacc gccaatagta tcagctatat agtatattat tgataactgg cttgtaaagc
      121 tcttcgtggc agccactcct atttcaggcc cgcatttcac ttctagaaaa caatcgctga
      181 gtcttgcaag agatgatgta gttacattta ctattgaaag gactttagcc cctttttctc
      241 tcgctgcctt cactgactgt aatacatctg cagtttcacc actttgggaa atagcaatta
      301 atacagaatt ttcatctaat agctcagaag aatattggaa ttcgcttgac acaacagttt
      361 ctacgcgtat ctgtgagtat ttagatagga tgtgttttgc tagcaatgct gaatgataac
      421 tagtcccact accggtgacg aaaacatccc tcgcatttgt aattatatcg caaaatgtct
      481 ctacgctttc tttcttttgc tgcatacttt tgaagatagt gtgactctgt tcatagattt
      541 ccttgagagt aaagtatgcg tattttcctt tatcactatc tgcgagttcc catgcaacct
      601 gtgttggagt tcgctcgact ttttctccgt caaaatcaat tatagaaaga ttgtttcctt
      661 ctaacagtac tatgtcccta ttgtctaaga atattgcgcg atcggtgtaa tccagaaatc
      721 ccaatacatc actagaaatg aaatagccac cagcggtaat tccaattata agtggttcat
      781 catatcttgc ggcacacagg gtcgaatcgt caaacacggc aacaaaagca aatgaacccc
      841 ttaatcggtt acaagtattc atcatggcct ctttaatgtc acattttaac gcccaatagt
      901 gttctaacag gtgcgctata acttcactgt ctgtctcact cttgaagaca tgacctttct
      961 ttagcaactc ctcctttaat tcctgatggt tttcgataac gccattatga actattgcca
     1021 aattggtcgt acaggcagaa tgtggatgag cattggaatc aataattccg ccatgcgtag
     1081 cccatcttgt atgaccgatc cccaattgac ctgccatttc ttttagtcct agtgatttat
     1141 ttacttcttc gactttgcct attccctttc tgatcaacaa ctttccacta tttagagtag
     1201 ctactccaac actgtcatac cccctatatt ccattttctg aagacctccg accaacaagg
     1261 gagctgcctt tcctacccct gaatatccta ttattgaaca catgtacgga tgctcctaac
     1321 caatggaatt gtagtgcttg ttccatgcaa aaaggctata agttcaatat caaaccaaat
     1381 caatttattc attatccctc atactgcgca tagtacaatt ctatatagtt aaagcaacgc
     1441 caataaaatc aaagatattg acttatttag gataattttt ggcatagttc ttactttgag
     1501 gattgtaggg ctattccgag ctaatagtgt agggcttaca tgtttcactt tgtatagctg
     1561 ccgttatcgc atagattctc tacaatactt gttgcccgca cgtccatgtt agatatagca
     1621 cgtcccaaat cccatgtgtc ataatctagg gttcgtcact cggttgaata aaactgtagg
     1681 tcaaattgtt gttatctggc tgctgtgacg ttactgagaa tacacatgtg ggtgcgattg
     1741 acatccagtt agcatacaca aaataatgag aaatatcatc tttttatcac gatggaaagt
     1801 tcgcaatcaa atgaagatat cgcaaaacag atcatcctaa aggaaataaa taatgtgtct
     1861 acaaacagtt taattattaa ggaaaatgga tgctcggctt gtcatatatt atttaacttg
     1921 atggataata tgcagataag cgaatcagat gcatctgatc ttttatcaca agttctatcc
     1981 gatgatccca agttaaatga ttgttttatt gaaatggtag aaaaaatcca tatgaaagaa
     2041 aggatgatgg gaataccatt ttcaattaag acccgcgaag ccaaggataa atacatcgct
     2101 tctaatttca aaaatctcct agcggagtta tcgtctgatc ttattaatta tggaacggat
     2161 atcgttctac gtaaattatt ggcgtccagt atcgcattgc aattagcaca aaatattggt
     2221 atcgactacc acgctgctac tgaagaactt tactactata tgagaaacaa tgaccaacaa
     2281 acaaatgaga gtatattaga atttattaat aatttttata gtagagtata taaaaaagat
     2341 tagagaatat aatacgcttc tggacgaatt tctctcgctc ttccccttcc ttgtatttga
     2401 gattaattaa taatctatgc ttctacattc gttcattcag aaaaagctaa attaacaagt
     2461 atctcgcgac agataaggcc tcctccaagg caattaaata atcattgtcg aggtcaataa
     2521 aggacagtac catatgaaat tgtttttata cgtctcaatt atactatgaa tcgactttag
     2581 atgaaaaaac aaaagaaagg accgtcagat gtctcaagta ccactatatt tcgaatggtg
     2641 tttgttcccc tggtttcaat catcgtgatg acactagctg taaccggttt tggaatcgat
     2701 caaaatagtt ctgcaaaagt ccaaggtagt gacaatgcta ccaatatcaa caataataac
     2761 aacactaatc ttggatcaaa caattctact gcaaactcaa ctgcgccaag cactattact
     2821 ttacccgtat caaaaggatt tgtagatgga aaagtagcat attttattgc aactgatgcg
     2881 tcaagtaaac aaattgtttc ttctgtctcc aataccacta gct
//
LOCUS       DASSIK010000212         4789 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1430185, whole genome shotgun sequence.
ACCESSION   DASSIK010000212 DASSIK010000000
VERSION     DASSIK010000212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4789)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4789)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4789
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1430185"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..427
                     /locus_tag="VFI64_03965"
     CDS             <1..427
                     /locus_tag="VFI64_03965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242479.1"
                     /translation="NRIILGVIVTMALGTTVISSGLTAQVVYGSHLPVILERKAPPAI
                     TGENVYVVWTSNKTGHDEVLFRASTDNGKTFGDKINLSNTTNDQSTRVEIDSDADSVV
                     VTWWETNETSDLPVMRISNDNGKTFGPLLQLAADGTLGE"
     gene            complement(598..792)
                     /locus_tag="VFI64_03970"
     CDS             complement(598..792)
                     /locus_tag="VFI64_03970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242480.1"
                     /translation="MRHWTRFYEQVFQMIGPYRKSRAASTPEVRVCEMDSNDVLISKP
                     LQKVEEITETKTTKERQAQD"
     gene            complement(1118..3850)
                     /locus_tag="VFI64_03975"
     CDS             complement(1118..3850)
                     /locus_tag="VFI64_03975"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HET7242481.1"
                     /translation="MNSDALTLESFKRNGFDTLTEIQKKAFPVVNRRGNCLLVAPTGS
                     GKTEAAVIPVFSLMSQADSSTGSIRAIYVTPLRALNNDVFRRIINYAKKMKLDVQIRH
                     GDTTTSARRKLVTNPPDILITTPESLGVILTNKNLLHSLKELEWIVVDEVHELISNER
                     GAHLALSLERLQANSNRKVIRIGLSATISNLEDAARFISGVGRKCAILVDKTIRDYDV
                     DVKYVGGSVSNIARYILKYIKSHKISGSVLLFTNTRDEAEYIGSVLRNLDEISTDVHH
                     GSLSREMREDTEIRLRSGMSGIVVCTSSLELGLDIGSVELVIHDGSPKQVSKLIQRIG
                     RSRHNSISSAKGLIVSNNYDDVVESLAIMRRMKRKSLESQIPHEAPLDVLAHHLVSLT
                     INNPGSKSLVEAFNLFTKAYPFRDVSFNDLQNVAKLLNTCRIIRYHDEDHTFKSGMKS
                     YTYYFENLSTIPHILKFEVVDMTRKRRIGNLDQQFIGEFGEKGNVFVLKGSQWRIINV
                     NENKMQVHVEQIHGSPINIPHWIGEMIPVDFETAREVGEVRKQILKDTKTAIMPDYSN
                     ILKSIAIVPDAKNIVIESVANKNTVVVHCTFGSKVNNTLASLLSTIISSQTGYFVETK
                     SDPYRIMLSSSARFGKNHIENIFREDYDVGAVLIASLTGTYNLNWRVWNVAKKFGIVD
                     KAATYDKRIARIIYDRYSKTPLSEESLRELIHDKYDISLTNSVMRDVRNDHIKIHWYD
                     LTEFTPLASPITDHNSKFTSSPLNIERGIIELVKERLENTKHRLICIRCGKWERLIET
                     KQVAGILSCNLCGSRLITATFSSDYELPKIILNKLSGASITSEENHKFERAWKVASLI
                     NNFGEKALLVLSGYGVGVDTAARILRNYVDDENVFKSIYNAERQYVTTRAFWKD"
     gene            complement(3851..3991)
                     /locus_tag="VFI64_03980"
     CDS             complement(3851..3991)
                     /locus_tag="VFI64_03980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242482.1"
                     /translation="MNFDLLVTAAIGMFIIGLAAVMYYESLSTKFRSMEGTKSETARE
                     ND"
     gene            4178..4450
                     /gene="sepF"
                     /locus_tag="VFI64_03985"
     CDS             4178..4450
                     /gene="sepF"
                     /locus_tag="VFI64_03985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0090529 - cell septum assembly [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein SepF"
                     /protein_id="HET7242483.1"
                     /translation="MQKEPIYLKAITLRDMSDLSGIKEDARKHTILIIRVTPLAHKDI
                     DNLRKVIEDLYSYVKSSGGDIARLGEERVVITPPNVKIWKGAYDLK"
     gene            complement(4494..>4789)
                     /locus_tag="VFI64_03990"
     CDS             complement(4494..>4789)
                     /locus_tag="VFI64_03990"
                     /inference="COORDINATES: protein motif:HMM:NF019159.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase RNA specificity
                     domain-containing protein"
                     /protein_id="HET7242484.1"
                     /translation="NPVPFTPSAKIMEGEREVCIGKKVLEIKCAVDTIPGFSSHSDYN
                     QTLAYVSRLKPKLRKIITNHGSGNRCHVLATSINKIFKIQTQHPSIHESIRLL"
BASE COUNT         1367 a          984 c          899 g         1539 t
ORIGIN      
        1 taatagaatc attttgggag ttatcgtgac gatggctctt ggaacgacag taatctcaag
       61 cggactaacg gcgcaagtag tatatggctc acatcttccc gtaatattag agagaaaagc
      121 ccccccagca attacaggtg aaaacgtata cgtcgtatgg actagcaaca agactggaca
      181 cgatgaggtg ttgttcagag caagcaccga taatggcaaa acatttggtg acaaaattaa
      241 tcttagtaac acgaccaatg atcaatccac aagagttgag atcgactcag acgcggatag
      301 cgtagttgtt acatggtggg aaactaacga aacaagtgac cttccagtca tgagaataag
      361 taatgataat ggcaagacct tcgggccatt attgcaattg gcagcggatg gaactctagg
      421 cgaataaata ttcgtcattc tttatttttt tctgtagagc cggatttttc agttgtgaaa
      481 ataattaaat cagaatattc catttgaaat tataacttca tgactggcaa ttatcttatt
      541 gatactttga agggaagcag ccttgctttc taggactggg ccttggggtg taagtttcta
      601 atcctgtgct tgccgttctt tagttgtttt ggtttcggta atctcttcca ctttttgcaa
      661 cggcttgctt atcaaaacgt cgttactatc catttcacac actcttactt cgggtgtcga
      721 agcagctctt gattttctat atggtccaat catttgaaat acttgttcgt agaatctcgt
      781 ccaatgtcgc actttgctaa agaaactata ataggttcta tgatttaaat actgtttatg
      841 ttcgccctca gtggtttcaa atcactaaca ccaaatttag ttaactaaca agttaatgat
      901 cgttcagttc tcctgtatat ttcgtatgtt gcaaataatg tacttcagcc atccttatcc
      961 cccggctagt cataaagacc ggtccaaccc cagtgactag caggcctcaa catataatca
     1021 cccagaattt tttggcataa tcactatgct cggatagtag tatttcctcg tgaacctgat
     1081 aataccgata taaattgaga ctatgtcctg atacagacta gtctttccaa aaggctctgg
     1141 tagttacata ttgtctctcg gcattgtata tgctcttgaa gacattctcg tcatctacat
     1201 aatttcggag tattcgagcc gctgtatcga ctccgacacc atatccggat aataccaaaa
     1261 gtgctttttc accaaaattg tttataagag atgctacttt ccatgcgcgc tcgaatttgt
     1321 gattttcttc tgaggttatg cttgccccac tcaatttatt caagattatt ttaggcaatt
     1381 cataatctga tgagaaagtt gcagttatta atcttgatcc acataaattg caggataaaa
     1441 tccctgcaac ctgcttagtc tcaattaaac gttcccactt cccacatctg atgcatatta
     1501 gtctgtgttt agtgttctca agtctctcct tgacgagttc aatgatgccg cgttcaatat
     1561 taagtggtga cgaggtgaat ttcgaattgt ggtcggttat tggggaagct aatggggtga
     1621 attcggttag atcataccaa tgaattttga tatgatcgtt acgcacatct ctcattactg
     1681 agttggtaag agaaatatca tatttgtcgt gaattaactc gcgaagcgat tcttcgctta
     1741 gtggtgtctt tgaataccta tcataaatta tacgtgcaat tcgcttatca taggtagctg
     1801 ccttgtcaac aatcccgaat ttctttgcaa cattccacac gcgccaattt agattgtagg
     1861 ttcctgtcaa tgaagcgatc aggactgcac ctacatcgta gtcctctcta aaaatattct
     1921 ctatgtgatt cttgccgaat ctagcactag aactgagcat tattctgtag ggatcagact
     1981 tagtttcaac aaagtatcca gtctgggaag aaattattgt tgacaaaagg gatgcaagtg
     2041 tattattaac tttacttcca aaagtacagt gcacgacaac agtatttttg ttggcaacac
     2101 tttctataac tatgttcttc gcatccggaa cgatagcgat acttttcaat atgttactat
     2161 aatcgggcat gatagccgtt tttgtatctt ttaaaatctg cttacgtact tccccaactt
     2221 cccttgcggt ttcaaagtct acaggtatca tctcacctat ccagtgagga atatttatag
     2281 gggatccatg aatttgttcc acgtgaactt gcattttgtt ttcgtttaca ttgatgatac
     2341 gccattgtga tcccttaagc acaaagacat ttcctttttc tccaaattct cctataaatt
     2401 gctgatctaa attaccaatt ctcctttttc ttgtcatatc cactacttca aacttcaaga
     2461 tatgcggaat agttgacaaa ttttcaaaat agtaggtgta tgatttcata cctgacttga
     2521 aagtatggtc ctcatcgtga tatcgaataa tcctgcacgt attcagcaac ttggctacat
     2581 tttggagatc attaaaagaa acatccctga atggatacgc cttagtaaag aggttaaacg
     2641 cctctactag tgattttgaa cctgggttgt ttatagttaa actaaccagg tgatgtgcta
     2701 acacatcaag cggagcttca tgtgggattt gagattccaa ggatttgcgt ttcatccttc
     2761 gcataattgc taaagattcg accacatcat cgtagttatt tgaaactatt agccctttgg
     2821 ctgaagatat gctattgtgt ctgctgcgac ctatcctctg aatgagcttt gaaacttgct
     2881 taggggagcc atcatgtata actaactcaa ccgagcctat gtccaatccc aactcgagcg
     2941 aagaagtgca tactacaatt cccgacattc cagatcttaa acgaatttct gtatcctcgc
     3001 gcatttcacg agaaagcgag ccatgatgta catcagttga tatctcatct aaattcctga
     3061 gaacggatcc aatgtattct gcttcatccc ttgtgtttgt aaataatagg acggaccctg
     3121 agattttgtg agacttgata tatttgagta tgtaacgcgc aatgttgctg actgaccctc
     3181 ctacatactt tacatcaaca tcatagtcac ggattgtctt atcaactaga atcgcacact
     3241 tccttccaac accactgatg aatctcgcgg catcttccaa atttgaaatt gtagctgaaa
     3301 gtcctattct gatcactttt ctattgctgt tggcttgaag acgttcaaga ctcaaagcca
     3361 ggtgagctcc acgttcattt gaaattagtt cgtggacctc gtcaactact atccattcca
     3421 gctccttcaa tgaatgtaat aaattcttgt tagttaaaat tacccccaaa gactctggcg
     3481 tggttatgag aatgtcaggt ggatttgtaa ctagttttcg tctagcactg gtagttgtat
     3541 ctccatgtct tatctgtacg tctagcttca ttttttttgc ataattgatt atcctacgga
     3601 acacatcgtt gttcaatgca cgaagcggtg tcacgtaaat tgctcttata gatcctgttg
     3661 aagaatcagc ctgggacatt aatgagaaaa ccggaatgac ggctgcttca gtcttaccag
     3721 aaccagtggg agccaccaga aggcaatttc ctctcctatt tactacagga aatgctttct
     3781 tttgaatttc cgttaaggta tcaaaaccat tcctcttgaa tgactctaat gttaaggcgt
     3841 ctgaattcat ctaatcgttt tctctggcag tttcggattt tgtcccttcc atagaacgga
     3901 atttagtact tagactctca tagtacatta cggctgcaag acctattatg aacatcccga
     3961 tcgctgcagt tactaaaaga tcaaaattca atgtccctag accaatttct aatttactcc
     4021 tcagatttat aaatggattg attctcgtta cgaaagcaca aggaaattct acctcacata
     4081 gaaattgaac ccacaggtta aaaagatttg accggaataa ctatttggca attaatgctc
     4141 actcctttta tcgtaactaa ggaatgatct tctctaaatg caaaaagaac cgatttatct
     4201 taaagcgata acgcttcggg atatgagcga tcttagtggc attaaagaag atgctcggaa
     4261 acacactatc cttattatca gagtgactcc gcttgctcac aaggatatag ataatttaag
     4321 gaaggtgata gaggacttgt acagctatgt aaaatcatcc ggaggtgata ttgcgagact
     4381 gggcgaggaa agggtagtta ttacgccccc gaacgtaaaa atctggaagg gagcatacga
     4441 tttgaaataa cgatgtagaa cttgagacat ttttcatgac taaacccaat ttatcatagt
     4501 agccttattg attcatggat tgatggatgt tgtgtctgta tcttgaaaat tttatttata
     4561 ctagtcgcta ggacatggca tctatttcca cttccgtggt tagtgattat ctttcttaac
     4621 ttaggtttaa gcctactaac ataggccaat gtttgattgt agtcactatg actgctgaac
     4681 ccaggaatgg tatccacagc acacttgatt tccaacactt ttttgcctat gcacacttca
     4741 cgctcacctt ccattatttt agcgcttgga gtaaatggga cgggattag
//
LOCUS       DASSIK010000213         3391 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_338236, whole genome shotgun sequence.
ACCESSION   DASSIK010000213 DASSIK010000000
VERSION     DASSIK010000213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3391)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3391)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3391
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_338236"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..438
                     /locus_tag="VFI64_03995"
     CDS             <1..438
                     /locus_tag="VFI64_03995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242485.1"
                     /translation="LHDIMEDNEKILDLYRTKDYGFDAYLGYRFGNKIYNMCIDLKIK
                     PLENFPGKTNEDRQLARFHDYCKILSSADYDVKAIKLADRINNMNFVSKLNTQKDAVI
                     AAKIKRYLREAEDFYLAYALLNPRMEDFYESLRSSYDKLKETG"
     gene            578..1441
                     /locus_tag="VFI64_04000"
     CDS             578..1441
                     /locus_tag="VFI64_04000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta"
                     /protein_id="HET7242486.1"
                     /translation="MVNVAVIVKLEPDFSEGNVSYNPDGTLNRAETKSILGPHSAIAC
                     NAAFYTKITYGSRISIGTMGPPIADSALRQAQELTDADEMNLYSDRIFAGADTLATAE
                     VLRSGIVKMLDGNKIDIVFSGHRASDGETGQTGPQTAWKLGYTFLGNVIEVNIDLERN
                     YVIVKRLVTLQGFDGIVEEVEAPLPVFITVDPSYSPNYRTIYQRLAFAKYRKEAIARA
                     NNYKQFLKIYDSKSLGVDPKFVGLPGSPTIVYRVEKIPKAKASRKTQLIEGQDIDAIK
                     SIVPKLRPIVS"
     gene            1448..2665
                     /locus_tag="VFI64_04005"
     CDS             1448..2665
                     /locus_tag="VFI64_04005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HET7242487.1"
                     /translation="MVTESSSNTSGGKYRNLYVVIEHIDGKLVPVSLEMLGEARRLMD
                     DFNQRYQESERVVAVVLGYKVQDLCQQLISYGADVVVYAENKELEYSRNTIDTKVIAQ
                     ISRNAGLAKQISPEYIPPYIKPRYMFFAADSIGRHLSSTVLAELESGLASDINKLVIS
                     DIDFRHEHKTKGQTIRYERTLEMYRPDFSGFLWTTILCLDNKNPEIMRDYHPQGCSII
                     PGVFNAIEPDIAREGLILQYKPTIDPEDLKVKVLNKQMLKKKIDFDGHRIIVSMGRGI
                     KDDPEQNVKLIEQFARLLDAEIGISLPLSKRLYQLSDSINSKYMIPERVIGTSGSKVA
                     PSFYIATGIHGAVQHIAGMKESEFVVAINPDENAPIKDESDIFINGRMEDVLPIIIEE
                     LQKLTPIVSSHME"
     gene            2672..>3391
                     /locus_tag="VFI64_04010"
     CDS             2672..>3391
                     /locus_tag="VFI64_04010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HET7242488.1"
                     /translation="METFDVAIVGGGSTGLAALKHLSDLGKQAVLIEAGPQVGTKNVS
                     GGILYSKRPRNGKVHNVEDVYGSDFEASAPLERHISKYILHATSGNKIFTLDLTPAHE
                     YQTNFGYSVLLNKLNSWFASVASESAEKQGGGIVTGVHVRDIQWSNENKTLIHTDELE
                     EFQVKAIIAADGVNSEIAYLTGARQKFSPNEVYQGVKVVIRLPEETIEERFEIDTSEG
                     AAHLFAGDVTLNHIGGGFIYTN"
BASE COUNT         1127 a          605 c          762 g          897 t
ORIGIN      
        1 ctgcatgata taatggaaga caatgagaaa atccttgatt tgtatcgtac caaggattat
       61 ggttttgatg cctatctcgg atatagattc ggaaataaga tctataacat gtgtattgat
      121 ctgaagataa aaccacttga aaacttcccg ggcaaaacga atgaagatcg tcagttagcc
      181 agattccacg attattgcaa gattctctca tcagcagatt atgacgtaaa ggcaataaaa
      241 cttgcagaca gaataaataa tatgaacttt gtatccaaat tgaacaccca gaaagatgcg
      301 gtgattgcag ccaagatcaa gagatatcta cgtgaggcag aagatttcta cttggcttat
      361 gcattgttaa atcctcgcat ggaagatttt tacgagagct taagatcatc atatgacaaa
      421 ttgaaagaga ctggataact cacaattttc tggccatttg tcgaatagtt tggaatagca
      481 aactgaactg ttttcaatcg tttgactcct atttatgcct aattcgtaaa ccatttaaag
      541 gaaaaatctg aaaccaactg cctaggtagc gaagattttg gtaaatgtcg cggttattgt
      601 gaaactcgag cctgattttt ctgaaggtaa tgttagttac aatccagatg gaaccctgaa
      661 tagagccgaa actaagagta tattaggtcc ccatagcgca attgcctgca atgctgcttt
      721 ttatacgaaa ataacctacg gctcacgtat atctataggt acaatgggtc cacccattgc
      781 tgattcagca ctaagacaag ctcaggaact tactgatgca gatgagatga atctgtatag
      841 cgataggata ttcgctgggg ctgataccct tgccactgcc gaagtgctca gaagtggaat
      901 tgtgaaaatg cttgatggaa acaaaataga tattgtcttt tcaggccata gggcatctga
      961 cggagaaact ggtcaaacag gacctcagac ggcatggaaa ctagggtata cattcttggg
     1021 aaatgttata gaagttaata ttgacctaga aaggaattat gtgattgtta aaaggctagt
     1081 aacgctgcag ggattcgatg gaatagttga agaagtcgaa gcacctctac cagtgtttat
     1141 aactgtggat ccttcgtata gccctaatta tcgtactata taccaacgcc tagcatttgc
     1201 aaagtatagg aaagaagcta ttgcacgtgc gaataattac aaacaattcc ttaagattta
     1261 tgatagtaaa tccttgggag tagatcctaa atttgtgggc cttcctggtt ctccgacaat
     1321 tgtttatagg gttgaaaaga tacccaaggc caaagcaagc aggaaaaccc aattgattga
     1381 gggtcaggat atcgatgcaa ttaaatcaat cgttccaaaa ctgcgaccaa ttgtgagctg
     1441 attacaaatg gttacagaat caagttctaa tactagtggc ggaaaataca gaaatcttta
     1501 tgtcgtaata gaacacatag acggaaagct agttcccgta agtctcgaaa tgctaggaga
     1561 agctagaagg ctgatggatg atttcaacca aaggtaccag gaatccgaga gagtcgttgc
     1621 agtcgtgctt ggatacaaag tacaggacct ttgtcagcaa ttaatctcgt atggcgctga
     1681 tgtagtcgtt tatgccgaaa ataaggaatt ggaatactct agaaatacta ttgacaccaa
     1741 ggttattgcc cagatctcaa gaaatgcagg tcttgcaaag cagatatctc cagagtatat
     1801 ccctccatac atcaaaccaa ggtacatgtt cttcgcggca gacagtatag ggaggcattt
     1861 atcatcgacg gtacttgcag agctagagtc gggtttagcg tcagatatta ataagctggt
     1921 aataagtgac atcgatttcc gacacgaaca taaaacaaag ggacagacta ttaggtacga
     1981 gcgaactctc gagatgtata gaccggattt ctcaggattt ttgtggacta ccatattatg
     2041 tcttgacaat aagaatccag aaattatgcg cgattatcat ccgcaaggat gtagtattat
     2101 tcctggcgtt ttcaatgcaa ttgaacctga tatcgctaga gaaggtctga ttttgcagta
     2161 taaacccaca atcgacccgg aggacttgaa ggttaaggtt ctgaacaaac aaatgctgaa
     2221 aaagaaaatt gactttgacg gccacagaat tatagtaagc atggggcgtg ggataaaaga
     2281 tgatcctgaa caaaatgtaa aactgatcga gcaattcgca agacttctag atgcagaaat
     2341 tggaatatct ttacctttgt cgaagaggct gtatcaattg agcgattcga taaattccaa
     2401 atacatgatc ccggaaagag taataggtac cagtggcagc aaggtagcac catcatttta
     2461 tattgctaca ggaattcatg gggcagttca gcacattgca ggaatgaagg aatcagaatt
     2521 tgtagtagca attaatcctg atgagaacgc tccaataaaa gacgaatcag acatattcat
     2581 aaatggtaga atggaagatg ttcttccgat catcatagaa gagttacaaa aactgacgcc
     2641 gattgtgtcg tcacatatgg agtaggtaga attggaaaca tttgatgtgg ctatagttgg
     2701 aggaggttca acaggtttgg cagccctaaa acacttatcg gatctcggca agcaagccgt
     2761 cctcatagaa gccggtccgc aggtggggac taaaaatgtg tctggtggaa ttctctattc
     2821 caagagaccc agaaatggca aagttcacaa tgtggaagac gtttacggaa gcgatttcga
     2881 ggcatcagct cctctagaac gacatattag taaatacatt cttcatgcaa cctcggggaa
     2941 caagattttt acattggacc ttactcctgc tcacgaatat cagacaaact ttggatattc
     3001 agtattactg aacaaattga attcttggtt tgcaagtgtg gcatcagaga gtgcagaaaa
     3061 acaaggaggg ggaatagtaa caggggtcca tgttcgagat atccaatggt ctaacgagaa
     3121 taaaacgcta attcatacag acgagttaga agaattccaa gtaaaggcga taattgctgc
     3181 tgatggagta aattcagaaa ttgcgtattt gactggtgcg agacaaaaat tttctccaaa
     3241 tgaagtatat cagggagtca aagttgtaat aagattaccg gaggagacca tagaagaaag
     3301 gtttgaaata gacacctctg agggggccgc tcatcttttt gctggtgatg taactctaaa
     3361 ccacataggc ggagggttca tttacactaa c
//
LOCUS       DASSIK010000214         4263 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1131287, whole genome shotgun sequence.
ACCESSION   DASSIK010000214 DASSIK010000000
VERSION     DASSIK010000214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4263)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4263)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4263
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1131287"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..297)
                     /locus_tag="VFI64_04015"
     CDS             complement(<1..297)
                     /locus_tag="VFI64_04015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242489.1"
                     /translation="MLVILSLSIATVAMGTTGLSLVSPVFAGGDHHDHGEKKCKNNDD
                     NNCNDTHKTQKINVKNECEIENTNKDHSHDNGNTNSLTCTNQVQNLDDVQQLDIF"
     gene            complement(701..1870)
                     /locus_tag="VFI64_04020"
     CDS             complement(701..1870)
                     /locus_tag="VFI64_04020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol-3-phosphate synthase"
                     /protein_id="HET7242490.1"
                     /translation="MSKKVRVAIAGVGNCASALVQGTSYYHRYHSSDDRKKGNENDVD
                     NSNSNSSSSNDSTNTTDGSHLAPPGLIAYNLGGIEPSDIEFVAAFDVVESKVGRDLAD
                     AIFASPNNTIKISDVNKTGITVEKGEVLDGVGKHLNERVKISDKSPPNIAQILKDSGA
                     EILINYLPVGSRQATKYYVEQCLDAGVSFINAIPVFIASTPKWQQAFAGKNLACAGDD
                     VMSQLGATVLHKTLVKLFVDRGVKIDETYQLNVGGDMDFYNMLDEERLEDKRISKTSA
                     VAAMVPYPIPMRIGPSDFVGFLDNDKICYINMRGKYFGNVPIELDVKLKVVDAYNSAG
                     VMIDAIRGTKLAIDRGTSGPLESISAYCFKHPPVQMSYSDAKDRFMEFIEGKRER"
     gene            complement(1953..2750)
                     /locus_tag="VFI64_04025"
     CDS             complement(1953..2750)
                     /locus_tag="VFI64_04025"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HET7242491.1"
                     /translation="MDSDTRLQSVMESNESAFCSLWAEYHKENGCAQMFLNLALGDDY
                     FFNRINLKNCVGIRDLLQLTRNKISQARQNCYIHVLKSDVLTLDILRKNGLIEFGSLK
                     IMNLQYELFGPRIDKHDVNILPVDPDNLNLWIDTFCRSFGAIDIKAEIARLSLKILKH
                     SILIIAISQFRGLVRPLGCCALFENSGGIGLYCLGTLPEHRDKGVATAMIKACLDISM
                     QNGYDCIFVQTLADEGLEKFYLKLGFKQAYEKVIFVLNRRVSCQSEL"
     gene            complement(2734..3876)
                     /locus_tag="VFI64_04030"
     CDS             complement(2734..3876)
                     /locus_tag="VFI64_04030"
                     /inference="COORDINATES: protein motif:HMM:NF013565.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HET7242492.1"
                     /translation="MKLQDTFSSSKTTVGVSNSKTRIFLCGPTVYDYCHIGHARIFII
                     FDVLSRFLKSKNVKVRTVVNVTDIDPKLYEGGDLGNCSSISKIYFDEFLKDLANLGIN
                     DSVIYCRTSDYVRIIIALIKKLLHEKKAYSVNGNIYLDVSKIRSFGQLSHLKKEEMIE
                     MRYDIDGNKRDPRDMILWNTTDYYGLTYHDEMLGNGVPSFHIQDTAVAMNHFNGAYEI
                     HGGGKDLVYPHHELQMALLQILTKRKKSVSHWMHIGFVLVDGKKMSKSYKNTVYLRHL
                     SKIYDVNVLRIYLLSRHYHQSIEFKLKDLPKYQKLNEILAGTLFDFRSSDQESGKDSR
                     IVNQFKSYLADDLDTPNALELLMETAKNDNKKNDVRKMVEILGLRY"
     gene            3990..4223
                     /locus_tag="VFI64_04035"
     CDS             3990..4223
                     /locus_tag="VFI64_04035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242493.1"
                     /translation="MKIKTLDSDGGIKIDSGRGTKIYLNRRPSGSYVAEIAEAKNSKM
                     DHPSENIRFIQNIDEIIALVEKTLGKSFSVIDY"
BASE COUNT         1233 a          876 c          763 g         1391 t
ORIGIN      
        1 gaagatgtcg agctgttgta catcgtccag gttctgtact tggttagtgc aggtgagaga
       61 atttgtattt ccattgtcat gactgtggtc tttgttcgta ttttctatct cacattcgtt
      121 cttgacattt atcttctgag ttttatgtgt gtcattacag ttgttgtcat cattgttctt
      181 gcatttcttc tcaccatggt catgatgatc accgccggca aagactggtg ataccagact
      241 caagcctgtt gtacccattg ctactgtcgc aatcgaaagc gacagaatca ctaacattcc
      301 aattttttct gatacatact ttattttcag cgtttgatac taaacaaagt ataagtaaag
      361 tgtgaaagac gccttggtaa gaaacgaaga gagttttcgc tacttcccta tgtctgaaat
      421 ctcatataga atattatcca aacttatcgc atctaatttg atctcctaaa aaatattgaa
      481 aactgttgat ataagcgtta acctctatgc tgttcggatc tgaataccta ttttccaacc
      541 cttggtaatg gactaactaa tgtggtcgtc caagctcggt tgaactagcc accaaagaga
      601 atagacagcc agtccaaccc taattaagta attgaaatat tagaaccacc atgtgcttaa
      661 tctaactatt attatgtgga atttgggtta tcattgctgc ttatctctcc ctcttacctt
      721 ctataaattc cataaatcgg tccttagcgt ctgagtaaga catctgtact ggcggatgtt
      781 tgaagcaata ggcagagatg ctctctagtg gtccgctggt gcccctgtca atggctaatt
      841 tagttcctct gattgcatca atcataaccc ctgcgctgtt gtaagcatct actaccttga
      901 gtttgacgtc gagttctatt ggaacattgc cgaagtattt tcctctcatg ttaatgtaac
      961 atattttatc attgtccagg aagcctacga agtctgatgg acctatgcgc ataggtatcg
     1021 ggtatggtac catggctgcc actgcacttg tcttgcttat cctcttatcc tcgagacgtt
     1081 cttcatcaag catattgtaa aagtccatat cacctcctac gttaagctgg tatgtctcgt
     1141 ctatctttac acctctatct acaaagagtt ttaccaaagt tttgtgtaaa actgtagctc
     1201 ccagctgact cattacgtca tcgccagcac aggccaagtt ctttcctgca aatgcctgct
     1261 gccattttgg tgtcgaagcg ataaagactg gtattgcgtt tataaaagat acacctgcat
     1321 caagacattg ctcgacatag tactttgtgg cctgtctgct tcccacagga agatagttta
     1381 tgaggatctc agctccagag tcctttagta tttgagctat atttggaggg ctcttgtcag
     1441 atatcttcac ccgttcgttt agatgttttc ctacaccgtc taatacttcg cctttctcta
     1501 ccgtgatgcc tgtcttattt acatcactta tcttgatggt gttattagga cttgcaaata
     1561 tcgcgtctgc taaatcccga ccaaccttgg attctacaac atcaaatgct gcaacaaatt
     1621 ctatatctga aggttcaatt cctccaaggt tgtaagcaat aaggcctgga ggggcaagat
     1681 gagatccgtc agtagtatta gtactatcgt tactgctgct actattacta ttactattgt
     1741 caacgtcatt ttcattacct tttttgcgat catcggaact atgataacga tgataatatg
     1801 atgtaccttg aaccaaagca gatgcacaat tgccaacacc agctatagca acccttacct
     1861 ttttgctcat ggaagatcgt aattcgccgg tttaattaat atattgataa tggtgcgaag
     1921 taagagacga atctacaatc ataaaaacaa ttctataact cagattgaca tgatactcgc
     1981 ctattgagta cgaagatgac cttttcataa gcttgtttga atccaagttt caaatagaat
     2041 ttttcaaggc cttcgtctgc caatgtttga acaaatatac aatcataccc attttgcata
     2101 gatatatcca aacatgcctt gatcattgcg gtcgcgaccc ccttatctct gtgttctggg
     2161 agcgtgccca gacaatacaa accaattcca ccactgtttt caaataacgc acaacatccc
     2221 agaggtctga caagccccct aaattgggaa atggcgataa taagtataga atgtttgaga
     2281 atcttcaaag ataatcttgc aatttcagct ttaatgtcta ttgctccaaa cgatctgcag
     2341 aacgtatcga tccagaggtt caggttatca gggtccacag ggagaatgtt gacatcatgt
     2401 ttatcaattc taggaccaaa caattcgtat tgcaaattca ttattttcag agaaccaaat
     2461 tcaattaatc cattttttcg taagatatcc agtgtgagga catcggattt caatacgtgt
     2521 atgtaacaat tttgtcgggc ttgagatatt ttatttctag tcaattggag tagatctcta
     2581 attccaacgc aattttttag gttgattctg ttaaaaaaat aatcgtcacc aagagccaga
     2641 ttcaaaaaca tttgagcgca accattttct ttatggtatt cagcccacag ggaacaaaac
     2701 gctgattcgt tgctttccat taccgattga agcctagtat cggagtccaa gaatttccac
     2761 catttttctt acatcattct ttttgttatc attttttgcc gtttccatca ataattctaa
     2821 agcatttgga gtatccaaat catccgcaag atacgacttg aattgattca caattctcga
     2881 atctttcccg ctttcttggt ctgatgacct aaaatcaaat agtgttcctg ccagtatttc
     2941 gttcaatttc tgatactttg gtagatcttt taacttaaat tctatagatt ggtggtaatg
     3001 acgcgaaaga agatagattc ttaggacatt tacatcatat atttttgata aatgtctcaa
     3061 ataaactgtg ttcttgtagg actttgacat tttcttaccg tcaaccagca caaaaccaat
     3121 gtgcatccaa tgtgatacag atttctttct cttggtaagg atttgcaaaa gggccatttg
     3181 cagttcgtga tgcggataga caagatcttt tccaccccca tggatttcat aagctccatt
     3241 gaaatgattc attgcgacag cagtatcttg tatgtggaat gaaggaacac catttccaag
     3301 catttcgtca tgatacgtaa gaccataata gtctgtggta ttccataaga tcatatcccg
     3361 gggatctctc ttgttaccgt ctatgtcgta tctcatttca atcatttctt cttttttcag
     3421 atgagacagt tgaccgaaac tacggatttt tgaaacatcc aaatagatat tgccgtttac
     3481 tgaatacgcc tttttttcgt gcaatagctt tttgattaat gcaatgatta ttcttacata
     3541 atcggaagtt ctgcaatata ttaccgaatc gtttattcca agattcgcca ggtctttaag
     3601 aaattcgtca aaatatattt tcgaaatgga gctacagttt cccagatctc cgccctcgta
     3661 cagcttcggg tcgatatcag tcacatttac taccgtcctg actttaacat tctttgattt
     3721 gagaaatcta gataacacat caaatattat gaagatacgc gcatgcccga tgtggcaata
     3781 atcgtatacg gtgggtccgc atagaaaaat tcttgttttg ctattgctga cccccactgt
     3841 cgttttgctt gaactaaagg tatcctgtaa tttcaaataa cctatgataa gtctaaaggt
     3901 attaattgta tgtggcaaat ttaaatcatc aactgttaca attgactgcc ccgagaataa
     3961 gttcgaaaca gaagaaaacg gaattcaaaa tgaagataaa aacccttgat tctgacggag
     4021 gcataaaaat agattcagga agaggaacaa agatatactt gaacagacga ccttctggtt
     4081 cttacgtagc tgagattgca gaggcgaaga atagtaaaat ggaccatccg agtgaaaaca
     4141 ttaggtttat tcaaaatatt gacgagataa ttgcattggt agagaagaca cttggtaaat
     4201 cattttctgt aattgattac tagcccaaac actgctattg cttatcacta gaaccgatgg
     4261 aat
//
LOCUS       DASSIK010000215         3403 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_933519, whole genome shotgun sequence.
ACCESSION   DASSIK010000215 DASSIK010000000
VERSION     DASSIK010000215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3403)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3403)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3403
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_933519"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..252
                     /locus_tag="VFI64_04040"
     CDS             <1..252
                     /locus_tag="VFI64_04040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242494.1"
                     /translation="RMRGRSKRTALSSIIVVSTGSSICKLRHSLPGVEVKSIDELSVL
                     DLAPGANPIRLTIYSKNAIEKLADVKTRILRVGEMVTSL"
     gene            249..530
                     /locus_tag="VFI64_04045"
     CDS             249..530
                     /locus_tag="VFI64_04045"
                     /inference="COORDINATES: protein motif:HMM:NF011118.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HET7242495.1"
                     /translation="MSDKVEDDGDTRPIIKHPYITEKTFNMIERENKLTFIVDEHATK
                     KDILEAMKMLYETEADRVYISRGLHGKKAIIRFSKPEAARDLATRLGLV"
     gene            622..1029
                     /locus_tag="VFI64_04050"
     CDS             622..1029
                     /locus_tag="VFI64_04050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HET7242496.1"
                     /translation="MVREFKFKGYAIEQLKNMSIESLLPLMNSRQRRSLDKRVGKYMN
                     DDKRKLRGDIKLAREGKINGSIKTHVRDMIILPDMVDLTIGVHNGKEFFAVQIRPEMI
                     GHYLGEYSITNKRVQHGAPGVGASRSSLYVPLK"
     gene            1037..1513
                     /locus_tag="VFI64_04055"
     CDS             1037..1513
                     /locus_tag="VFI64_04055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HET7242497.1"
                     /translation="MPSYSYSFEKFNKTKHVRASIRETDISHKHAREIALAIKGLSVE
                     KARSYLEEVIDRKIAVPFRRYNNEVAHRSNIKDGFFSGRFPKKASTEFLKLLDNLESN
                     AEYKGMDLDRLRIISCVTHKGTKLERFIPRAMGRSSPKIDTLVHIEIVAQEGHTVE"
     gene            1549..2385
                     /locus_tag="VFI64_04060"
     CDS             1549..2385
                     /locus_tag="VFI64_04060"
                     /inference="COORDINATES: protein motif:HMM:NF003219.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HET7242498.1"
                     /translation="MSAVKNVMKNNYKMMELDEYLNATLKDAGYGGSEIQKTPIGTKI
                     TLFVTRPGLVIGRKGAGIKDLTARLEQQFGLSNPQVSVMEVTKPELNAKIMANRIGQL
                     VERGTAFRRAALWTINTIMEAGALGVEVTISGKLRSERSHFEKHTSGVVPKSGDIADK
                     VVRTSITQVLTKMGLLGIRLKIALKEDLPRDFQLLDEVNVAPESALEGEKGIPSPEVK
                     PATPPADKILPQPKVEEPISESSSITVIDENKNGKIEASGDAIRLEQDASKEVKETES
                     KE"
     gene            2405..2605
                     /gene="rpmC"
                     /locus_tag="VFI64_04065"
     CDS             2405..2605
                     /gene="rpmC"
                     /locus_tag="VFI64_04065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HET7242499.1"
                     /translation="MKLNTLREFNDEDLRAKLLELKADLSKLKSESAKGTLKKETGNI
                     KWTRRDIARIITIINERKTLKK"
     gene            2890..3225
                     /locus_tag="VFI64_04070"
     CDS             2890..3225
                     /locus_tag="VFI64_04070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020266360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HET7242500.1"
                     /translation="MVKNIGLTIVPPKRTCEDELCPFHGKLPIRGKSLVGTAVSCKAH
                     KMIVVSREYPRPVQKYKRYERSSSKVHAFLPTCIDVQEGDVVKIAECRPLSKTISFVV
                     IEVLAKSGI"
     gene            3215..>3403
                     /locus_tag="VFI64_04075"
     CDS             3215..>3403
                     /locus_tag="VFI64_04075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uL14 family ribosomal protein"
                     /protein_id="HET7242501.1"
                     /translation="MASKSRAVSSKGVEEFRPYITRALPTSATLTCADNTGAKILRIV
                     QVTRYKGRHARQPAAAVGD"
BASE COUNT         1190 a          562 c          795 g          856 t
ORIGIN      
        1 cgaatgcgtg gtagatcgaa acgtactgcg ttaagtagca tcatcgttgt gagcacagga
       61 tcatcaatat gtaaactaag gcattctttg ccaggcgtcg aagtaaaatc aatagatgag
      121 ctaagtgttc tggacctggc tccaggagca aaccctatcc gtttgactat ttattcaaag
      181 aatgcaattg agaaacttgc tgatgtgaaa accagaattt tgagggtagg cgaaatggtg
      241 actagtttat gagcgataag gttgaggacg acggagatac aagacccata atcaaacacc
      301 catacatcac tgaaaaaaca ttcaacatga ttgagaggga aaataaattg acatttatag
      361 tagacgaaca cgctacgaag aaggatattc tagaggcaat gaaaatgtta tacgagactg
      421 aggctgatag ggtctatatc tcacgtggtc tacacgggaa gaaggcaata atcagatttt
      481 caaaacctga agcagctaga gatcttgcga cgcggttggg gcttgtctag gaatatgaaa
      541 tagatgagtt tgattatatt gataagatca atactactac tagttaaatt taaaagtggt
      601 atgtaagggt gaggaacata cttggtacgc gagtttaagt ttaagggtta tgctattgag
      661 cagttgaaga acatgtcaat agaatcactt ttaccgctaa tgaattctcg tcagagaaga
      721 tcgctggata aaagagttgg aaaatacatg aatgatgata agaggaaatt gcgaggtgac
      781 atcaaattag ctcgagaagg aaagatcaat ggatctataa agacacatgt gagagatatg
      841 ataatacttc cagacatggt tgatctaact attggcgttc ataacggcaa ggaatttttt
      901 gctgttcaaa taaggcccga gatgattggg cattatttag gagagtattc tattacaaac
      961 aagagggtcc aacatggcgc ccctggagtt ggagcctcac gatctagcct gtatgtccca
     1021 ttgaagtgat tcttagatgc cttcctattc ttattcattt gaaaagttta acaaaacaaa
     1081 gcatgttcgc gcttcaataa gagaaactga catctcccat aaacatgcta gagaaatcgc
     1141 gcttgcaata aagggcttga gtgtcgagaa agccaggagt tatctggaag aggtcattga
     1201 ccgaaagatt gcagtaccat tcagaagata caataacgag gtggcccatc gttccaacat
     1261 taaggatggc ttcttttcag gacgatttcc aaagaaggct tctactgaat tcttaaaact
     1321 cttagacaat ttggagtcaa atgcagagta taaaggtatg gacctcgaca gattgagaat
     1381 catttcatgt gttactcaca aaggaacaaa actggaacgc ttcataccta gagcaatggg
     1441 tcggtctagt ccaaagatag atacattagt acatatagag atcgttgctc aggaaggaca
     1501 tacggtggaa taattcaaat gaaaaaaaag gataatgagt ggtaaagaat gagcgctgta
     1561 aaaaatgtaa tgaaaaataa ttataaaatg atggaacttg atgaatatct aaatgccact
     1621 ttgaaagatg caggttatgg aggatcagag atccagaaaa ctccaatagg taccaaaata
     1681 acattgtttg ttactcgccc tggtcttgta atagggagaa agggtgcagg tattaaggat
     1741 ctgaccgcca gattagagca gcaattcggt ttaagtaatc cccaagtttc tgtaatggaa
     1801 gtaacaaaac cggaactaaa tgctaagata atggcaaata gaatcggaca acttgtagag
     1861 agaggaactg cgtttcgacg tgcagcgctt tggactatta atacgataat ggaagctggt
     1921 gctttgggtg tagaggtaac tatatcaggt aagttaagaa gcgaacgttc acattttgaa
     1981 aagcacactt ctggagttgt tccaaagagc ggcgatatag cagataaggt ggttagaacc
     2041 agcatcacgc aggtgctgac aaaaatgggg ttattgggaa ttcggctaaa aatagccttg
     2101 aaagaagatt tgccgcgaga tttccaactt ttagatgaag ttaatgtggc accagagtct
     2161 gccctcgagg gggaaaaagg aattccttct cctgaagtca agcctgccac cccacctgca
     2221 gacaaaatat tacctcaacc caaagttgag gaaccaattt cagagagttc ttccatcact
     2281 gtaatcgatg agaataaaaa tggtaaaatt gaggctagtg gagatgcgat tagattagaa
     2341 caagatgctt ctaaggaagt aaaggaaaca gagtctaagg aatgatgaaa gatccatggg
     2401 aaggatgaaa ctaaatactt taagagagtt taatgatgaa gacctaagag caaaacttct
     2461 ggagcttaag gctgatctat ctaagttaaa atcagagagc gctaaaggga cactcaaaaa
     2521 ggaaactggc aacataaagt ggacaagacg agatattgca cgtatcatta ccataattaa
     2581 tgaaagaaaa acgttgaaaa agtgaattga attgagaaca atccagaaca ttctaaaaca
     2641 cgaatttatc ggtttgaagg ttcatgttga atatggatcg ccaaggattc cgaagtcgtg
     2701 tgatgggatg ataatccacg agactaagaa tacttttgtc ataagaaatg agcacaagcc
     2761 caagacgata cccaaagtat ccatcaaggc aatgaatctg cgactatcta gtgacgttta
     2821 ctttataaag ggctcttcat tgttaggaaa accagaagat cgtatatttc gataatgagt
     2881 tgatttataa tggtgaaaaa tattggatta acaatcgttc ccccaaaaag gacttgcgaa
     2941 gatgaacttt gcccgttcca cggcaaactt ccaatcagag gaaagtcatt agttggtaca
     3001 gcggtaagtt gtaaagcgca taaaatgata gttgtttcac gtgagtaccc gagaccagtt
     3061 caaaagtaca agagatacga aagaagtagt tctaaagtcc atgcctttct tccgacgtgt
     3121 atagatgtac aagaaggaga tgtagtgaaa attgctgaat gtagaccttt gtctaagaca
     3181 atttcctttg tagtcataga ggtgttagca aaaagtggca tctaaaagca gagcggtttc
     3241 ctccaaaggt gtcgaagagt ttagacccta cataacaagg gcgctgccga ctagtgcaac
     3301 tctcacatgt gctgataata cgggagcaaa gatactgaga atagtgcagg taactcgata
     3361 caaaggaaga catgctaggc agcctgctgc ggcagttgga gat
//
LOCUS       DASSIK010000216         2968 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_535992, whole genome shotgun sequence.
ACCESSION   DASSIK010000216 DASSIK010000000
VERSION     DASSIK010000216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2968)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2968)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2968
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_535992"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..603)
                     /locus_tag="VFI64_04080"
     CDS             complement(<1..603)
                     /locus_tag="VFI64_04080"
                     /inference="COORDINATES: protein motif:HMM:NF020014.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242502.1"
                     /translation="MKFQAQDVLELPKFKTALEYRNRLTFGIGKLDSILDLHLEDMIG
                     IFGETRYTNALVTRLIVRSLMPHKDGGFDGEKVIVIDHDNSSNLHLSVDFARYYGLDL
                     NRVIENVLVSRQYENYKLINAINYELPKRVQIHKPRVIVISGLVGQFLQEPNIDIDEF
                     ESLTIQIVTALHKIKDVLIILTSRFGDNKMEFPALSRIIEI"
     gene            complement(707..946)
                     /locus_tag="VFI64_04085"
     CDS             complement(707..946)
                     /locus_tag="VFI64_04085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242503.1"
                     /translation="MSKSIMLAGLLINLIASILISYGRIFRSRKTIEKESITDGHENV
                     HEEKHRLIETRVAQVGAVLLAIGFAIQIWGTTVDS"
     gene            1145..1270
                     /locus_tag="VFI64_04090"
     CDS             1145..1270
                     /locus_tag="VFI64_04090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242504.1"
                     /translation="MTALRNYDYLKDKLGNPRTLTGAIGLTAVASNPVQALMSQG"
     gene            complement(2279..2752)
                     /locus_tag="VFI64_04095"
     CDS             complement(2279..2752)
                     /locus_tag="VFI64_04095"
                     /EC_number="1.-.-.-"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: protein motif:HMM:NF013412.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004733 - pyridoxamine phosphate oxidase
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HET7242505.1"
                     /translation="MLRILNASPGFGAPLSEQEIKAFLTSKVLNVHLGTVDEDGDANI
                     HPAWYYYDPSKDKIYVETGRLSKKTDNLKKNNTIYFCIDDQNPPYKGVRGKGTVKIYE
                     DINFNVPIAEKIHIRYLGSLENPISKSLMDAMKKGQSVVLEISPRYYSTWDYSKV"
BASE COUNT          928 a          551 c          501 g          988 t
ORIGIN      
        1 aatttcgata attctagaca atgcaggaaa ttccatttta ttatctccga aacgtgaagt
       61 taagattatt aatacatctt taattttgtg taacgctgtt actatttgaa ttgtcagact
      121 ctcaaactca tctatatcga tgttgggttc ttgaaggaat tgacctacta aaccagaaat
      181 aacaattact cttggtttgt gtatttgtac tcgctttggt aattcgtagt ttatagcatt
      241 aatcaattta tagttctcgt actgtctgct gaccaataca ttttcaatta ccctattcag
      301 atccaaccca tagtatctag caaaatcaac cgaaagatga agattagagg aattgtcgtg
      361 atctattaca attacttttt caccatcaaa tccaccatct ttgtgcggca tcaaagaccg
      421 aacaataagt ctagttacca gagcgtttgt gtatctagtt tcaccaaaaa tcccaatcat
      481 atcttcaagg tgtaaatcta gaatcgaatc taatttccca atgccaaaag tcaatcggtt
      541 gcgatattct aatgcagttt tgaactttgg tagttctagg acatcttgag cttgaaactt
      601 caaatttgtt tcgataataa ttgtgggtta taaaaatgga gagtagatgc aggaacgggg
      661 gatggatatt gttaataagg aataatcctt acaaatggat ctcaattcaa ctatcgactg
      721 tagttcccca gatttgaatc gcaaaaccaa ttgcgagtaa taccgcacca acctgggcga
      781 cacgagtttc aatcagccta tgtttttctt cgtggacatt ctcatgaccg tcggttattg
      841 actctttttc gattgtcttc ctggacctga aaattctgcc ataacttatc aggatcgaag
      901 caatcaaatt aatcaaaagt cctgcaagca tgatagattt tgacaagacc taccagttaa
      961 ttaatggcca ttatgcataa taaaggcata attctaatgt gattgcctct ttaatcaaag
     1021 ccatatttca cgagccatta tgattattat tcttcatgtt tctgtacttt taattctcca
     1081 aaattgtttg cgtaatggac gaaaaatgtc ttgaaaatat aacggctgct gtgtcaagaa
     1141 ttatatgaca gccttgcgta attacgatta cttgaaggat aaacttggca atcctaggac
     1201 attaacgggt gcgattggat tgacagccgt tgcatctaac cctgttcagg ctcttatgag
     1261 ccaaggatga gtactgtctt ttccttccaa ttttttaata attattgatc gtggcctaac
     1321 ctatattgca ggttcatttt gaagaaaaga ccaaagaagt atccgttaag agtaaagatt
     1381 tgtcttctct ttttacttag tatattttca ttaaactgac tagcatccaa cttctaggcc
     1441 taagcgggtc ttgttagtag ttgttgtgta ctagatacat tagccacata gcattcgtga
     1501 caaaccattt ttcctatcca ttgataaagt gaaaatgttg cttttccaca ttgttcacaa
     1561 tacatttggt tcatcaattc aatgatatat agccctacat tatttaatac agttccaact
     1621 aaacgaattt tataaaaatg ttatataagt tgttactgtt gtcgttaatg tcataattag
     1681 tattgtggct aatgtcgaga tcctcacagt attcgatatg accattacaa agttaacact
     1741 aatagatttt caacattgac gtactaacac ggaaaatgtg aatcagttat cttgctgaca
     1801 tactgtctga tgtgtatcca ttatgcaatg attcagccca ggagtacaaa tagaacaaaa
     1861 taaagaagaa ttaaccatat tctggtaaaa gatagttttt tgctatgtga actttatcag
     1921 cacctagatg caataataat tgcaagagat agtgcgatca tatattttgc atttgaattc
     1981 aacgttcttg tgcaagtgtt tgttcgcatg ctcttgcatt acatgttact tctggcaata
     2041 gaaactacag atagtagagc cgattaatca gcacttcgac aatccttcaa tgacatacgc
     2101 tctgaaagct gcgaaatatt cttcaaatca aagagattaa atactaaaat cttgtagaaa
     2161 agaatgtact ggctgtcgga ggatcggtta aattagactt tgaccaccga aagacaacgg
     2221 cggccagcgc aactcagatt taaatgtcaa taaactattt ttgattgtcc ttaattggtt
     2281 agactttgct atagtcccaa gtcgagtaat accttggact aatttctaag acaaccgatt
     2341 ggcctttctt cattgcatcc ataagcgact ttgatattgg attttctagg ctccctaaat
     2401 atctaatatg tatcttctcc gcaataggaa cattaaagtt tatatcttca tatattttca
     2461 cagttccctt tccacgaacc cctttatatg gagggttttg atcgtcgata caaaaataaa
     2521 ttgtattatt ctttttaaga ttgtccgttt tcttggacag ccttcctgtt tcaacataga
     2581 ttttgtcctt cgaaggatca tagtagtacc atgcaggatg aatgtttgca tcgccgtcct
     2641 catctactgt tccaagatgc acatttagaa cttttgaggt cagaaatgcc tttatttctt
     2701 gttcactgag tggtgcacca aatcctgggc tggcgtttag aatccttagc atatagtttt
     2761 aagacctttt tgcgtattta aatcatctga aatgaagaaa tagttgatac agaccagcaa
     2821 caagaaaacc cgtcgtgtat agtcaagata aacaaaaagc atgttttatg tacgccgtac
     2881 aaaaaaatca aactgttaaa tggttcaaat cccaatacga gaatatatca taatattcct
     2941 taacccggtt tcaacccctt agatggac
//
LOCUS       DASSIK010000217         2952 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1131552, whole genome shotgun sequence.
ACCESSION   DASSIK010000217 DASSIK010000000
VERSION     DASSIK010000217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2952)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2952)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2952
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1131552"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            198..286
                     /locus_tag="VFI64_04100"
     tRNA            join(198..233,251..286)
                     /locus_tag="VFI64_04100"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:230..232,aa:Cys,seq:gca)
     gene            412..720
                     /locus_tag="VFI64_04105"
     CDS             412..720
                     /locus_tag="VFI64_04105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242506.1"
                     /translation="MVALPEQDKEIYSVHFARFAAKLEKHLLNHGVACNDADIIIEES
                     SVIFFERLNNPRKFISRIFKKQQPLQLFVESAFEAIAKHIPEAQKTFGSYDAIEFSLR
                     "
     gene            complement(751..890)
                     /locus_tag="VFI64_04110"
     tRNA            complement(join(751..765,797..817,853..890))
                     /locus_tag="VFI64_04110"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(854..856),aa:Trp,seq:cca)
     gene            1424..1924
                     /locus_tag="VFI64_04115"
     CDS             1424..1924
                     /locus_tag="VFI64_04115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242507.1"
                     /translation="MKKTFNLKMPVSADILPVIPGKIFDRMSVSLLARDHSSRGKSIY
                     HFYLAYFKPFWTDCQTEGYSSDNFGMIYWERPKGLSSTSVERIKFFAETNCVKISHLL
                     SHEIMRMMGKSRKIYFDGVHELCEKHRRGKLPFLYFNDRFDLVPNTESYHFSTIDIKK
                     MATQGM"
     gene            1951..2256
                     /locus_tag="VFI64_04120"
     CDS             1951..2256
                     /locus_tag="VFI64_04120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242508.1"
                     /translation="MVMRNVDIIVKLGGVVALLGAVILVTFAYALLAYPIEKKCSSTT
                     NKCEFFSKSPEVLRWLINAYVIVTSLLLIAGGVGIFRFALWYQYKNANHATHENGRG"
     gene            complement(2343..>2952)
                     /locus_tag="VFI64_04125"
     CDS             complement(2343..>2952)
                     /locus_tag="VFI64_04125"
                     /inference="COORDINATES: protein motif:HMM:NF014910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-linked oxidase C-terminal domain-containing
                     protein"
                     /protein_id="HET7242509.1"
                     /translation="NDHDTRYDSCTLLVEFHGNGNSLLKQKIKEFEYGVSQFSRVIES
                     TNDKTGIEKIWNERKNALNNVLKNTLGSRKPLGMIEDTVLDPSLLLDFVNFLIDVYRK
                     YNVSYAIYGHAGDGNLHTRPIIDTEQKTGIDKMEMITSDVFRFILGHGGSISGEHGDG
                     LARVKHVFQMYGSEVYSLFVKTKQIFDKNNIMNPGKKVLFDT"
BASE COUNT          915 a          540 c          555 g          942 t
ORIGIN      
        1 agtataatcc aatcgaaaag agacccaagg ctgaataata ccgaatagag gacaaatcct
       61 aattacgcat caaaagattt ttcatattat atgtggccaa aatgtgtaat gtgctaatgc
      121 gagataaaag gtttggagtc agtcggatca actagtgaca aataatttaa attgagaacc
      181 aaatgccatt tgaataaggt ggggtggcag agaggctatg cgttcgcctg cagcatgtca
      241 aatcgtggat agcgaatcta taagggttcg aatcccttcc ccacctcttt tgtgttcttg
      301 tttcaatgta caattggacc taatgctgta ttaatcaagt gatttgtgac acgctggaaa
      361 gataaagata ataatgattc gattggtata tttcgctgat agtaattact agtggtagca
      421 ttgccggagc aggataaaga aatttattcg gtacactttg ctagatttgc tgcaaagttg
      481 gaaaagcatc tactcaatca cggagtagct tgcaacgatg ctgacataat aatcgaggaa
      541 agttcagtta tctttttcga gagactgaat aatccgcgaa aattcatttc taggatattc
      601 aaaaaacaac aaccacttca gttattcgta gaatcagcgt ttgaagctat agcaaagcat
      661 attcctgaag ctcaaaaaac atttggatca tatgatgcaa ttgagtttag ccttcgataa
      721 tattagttgg gggagaaaca ataggatgaa tggggccgaa gggatgtgtt ctggatcgat
      781 accacatcat atccatttga acccttgatc cacgggtatc actctctatg acctagccct
      841 tattatttag atctggagcc cgttgcgatg cctggcttcg ctacgacccc acaggtgcat
      901 cgctctggtg tattgatttc caagtaagta taagttttgc gacgccacat tgcaatttct
      961 ataatcgatt catcaccaaa ttttagcatg tgatgcgctt ggttatcctc ttcatgttcc
     1021 tcacttttat agcgttagaa atatgtagat tatttgtctt aatttgcacg accaataatc
     1081 ttaatcttta attatttctt ctttctcctt aatttcatat ttatctatct gatccactaa
     1141 aatcaagact atgtaatacc agattgagtt gatacatgtg cgaagtatgt tagctaagct
     1201 aaatttgact gatggagaaa accaaaaata gttttatttc tagtcaaaat cgcggttcaa
     1261 gacgggtaag ctaattggta tttataatac gagtctgaat ttacttctgt tgtatgccca
     1321 acgtcttttt ctcatttatg tgtcgaaaaa tgatgaatgg gtactccgga aagaagaaga
     1381 ttgggattat atatcacaaa tgtcgcgatt tttgcaacac tggatgaaga aaacttttaa
     1441 tttaaaaatg cccgtaagtg cagatattct tccagtgata cctggaaaaa tatttgatag
     1501 aatgtctgtt tccttacttg ctagagacca ttcatctaga ggaaaatcca tctatcactt
     1561 ttatcttgca tactttaaac ctttctggac cgactgccaa actgaggggt attcttcaga
     1621 taattttggg atgatctact gggaaaggcc aaaaggatta tcatcaacaa gtgttgaacg
     1681 aataaaattt tttgctgaaa cgaattgtgt gaaaatttca catctgctat cccatgagat
     1741 tatgcgcatg atgggaaaat ccagaaaaat ctacttcgat ggggttcatg aattatgcga
     1801 aaaacataga cgaggaaagt tgccgttcct ttacttcaat gatagattcg acctggtccc
     1861 caataccgaa tcctatcact tttccacgat agatataaaa aaaatggcaa cacagggtat
     1921 gtaaaacaaa ttcgtcgggt tagtataaaa atggtaatga ggaatgttga catcattgta
     1981 aagctcggag gtgtggtggc gttactaggt gcggtaattc ttgtcacttt tgcatatgct
     2041 cttttggcct acccaattga aaaaaaatgt tcatctacaa caaataaatg cgaattcttt
     2101 tccaaatcac ctgaggtact tcgctggcta ataaatgcct acgtcattgt tacctcttta
     2161 ttgttgattg ctggtggagt tggtatattc agatttgctt tatggtatca atataaaaat
     2221 gcaaatcatg caactcacga aaatggtagg ggctgaaaag actagctaaa tctgcaactg
     2281 gttccataag atagcatgtc gccaacaaag atcatttcag cagtggaatg tttccaagtt
     2341 tatcaagtgt caaataatac cttcttccct ggattcatta tattgttctt gtcaaaaatt
     2401 tgctttgttt tgacaaaaag tgaatatacc tcggaaccat acatctgaaa cacatgcttt
     2461 actcgcgcaa ggccatcacc atgttctcca gaaatgctgc cgccatgtcc taaaataaat
     2521 cgaaaaacgt cactggttat catctccatt ttatctattc ctgttttctg ctctgtgtca
     2581 ataataggcc tagtgtgtag attgccatca ccagcatgtc cgtagatcgc ataactaaca
     2641 ttatattttc tgtagacatc aattaggaaa tttacaaaat ctagtaaaag ggacggatct
     2701 aaaacagtat cttctatcat gcctaaaggc tttcttgatc ccaaagtgtt ttttagcaca
     2761 ttatttagag catttttcct ctcgttccaa attttttcaa tacccgtctt atcgttcgtg
     2821 ctttctatta ctcgggaaaa ttgagagacc ccatattcga attctttgat tttttgtttt
     2881 aacaaagaat ttccgttacc gtgaaattca accaatagag tacaggaatc gtatcgggtg
     2941 tcatgatcat tt
//
LOCUS       DASSIK010000218         2012 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1225854, whole genome shotgun sequence.
ACCESSION   DASSIK010000218 DASSIK010000000
VERSION     DASSIK010000218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2012)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2012)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2012
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1225854"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..648)
                     /locus_tag="VFI64_04130"
     CDS             complement(<1..648)
                     /locus_tag="VFI64_04130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242510.1"
                     /translation="MVRDETSKLSSRPKLVAMLVILIVIIAVSYSMTNYSNLKSNVRL
                     YLNWTTNVTSASALAMSALATFQAFEIGKIRKKRVKKINDNNNEPKYQLYTLTWFTMG
                     LILWFIAELSWTYYELGLGIENPYPSPADAIWLAGYPFIIYFLFGISKVLSRQKFSYD
                     REPLILISVATALTLAYIFTLTFGIASMISNQQNMVAWIITIIYPLLDGIAFVPSL"
     gene            complement(1009..1236)
                     /locus_tag="VFI64_04135"
     CDS             complement(1009..1236)
                     /locus_tag="VFI64_04135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242511.1"
                     /translation="MDKYDVVYCKVMTDEFEVKSKTKYEVDTKGDTERNLEDAGDKIK
                     AGAKAVANKIKDPDRDLGTEYDKEKIKEKVD"
BASE COUNT          623 a          349 c          371 g          669 t
ORIGIN      
        1 aagagaagga acaaacgcaa taccatcaag taaagggtaa ataatggtaa tgatccaagc
       61 caccatattc tgttggttag atatcatact tgcgatcccg aatgtaagtg taaatatata
      121 tgcgagtgtt aaagcagtgg caactgatat taaaatgaga ggttcgcgat cataagaaaa
      181 tttttgtctt gacaaaacct tacttatccc aaataaaaaa taaataatga atggataacc
      241 tgcgagccaa atcgcatctg caggagaagg atagggattt tcaataccca gtccgagttc
      301 gtagtatgtc caacttaact cagcgatgaa ccataatatt aatcccattg taaaccaagt
      361 taatgtgtac aactgatatt tcggttcgtt attattatca ttaatttttt taaccctctt
      421 cttacggatt ttgccaatct caaaggcctg gaatgttgca agggctgaca tagctaaagc
      481 ggaggccgat gtaacatttg tcgtccagtt caagtagagt ctgacgttgg acttgagatt
      541 tgaataattc gtcatagaat aagatacggc aataataaca atcaagataa ctagcatggc
      601 tacaagctta ggtctggaag ataatttact agtttcgtct cttaccacgg gattgatgat
      661 atcacatagt tttaaaattt tggcattgat tgcgtccggt aattgcgaga taatgcatca
      721 ggagagcaac cacaggttat ttaggatgtt taagatgggg ataaatttct caagtcattt
      781 gatcaccaaa taataattct cttctctaga tcctcgccgt tgttaccaaa catgatattg
      841 agtacaatac tgtacgtttc atcctattta gtttattttt gctgcataat ctgtacgcag
      901 tagtccttaa aggatcgtaa tgaacaatag gtaaattctt caaaaaacca tttttctaaa
      961 cttggtaact atcataactg tactcgctag ctagaaaaaa aagagatact aatctacttt
     1021 ttccttaatt ttttctttat cgtattctgt tccgagatct ctatctggat cttttatttt
     1081 attggctact gcttttgccc cggctttaat cttgtctcct gcatcctcta aattcctttc
     1141 agtatcgcct ttagtatcta cttcatactt agtttttgat tttacttcga attcatcagt
     1201 cattacttta caatatacaa catcgtattt atccatagta aaaagggtta ttcatggttt
     1261 cgacgggcat agcagcactg taaagctatg ggaacttttc atatagttcg aagctaaata
     1321 tcgtcatata atcatgggac tagaattcct cgccatgtga gatttgagtt gtttttgtag
     1381 gcattactga aagttgaact ttttacatgt ctattattct cctaccaagt cttcgccata
     1441 gtcctacgtt tttgtcaggg taatatagca tatacattag aaatagacgt ggcagatttg
     1501 aaatgcgatg tgccacagct acacgaatta tactatcgtt ttatggtttg ttgccgagta
     1561 ctattgcgtg atattatatg tcttgtaagg gaatatgcat tcgtcacaga gctaccaaat
     1621 taccaaacaa aatgcggtat gctaatggtc agaagcgatg tcaaatgtgt gatattttta
     1681 taaaatggga tggaatttgg tgcccctgtt gtggatatag gttgagaacg aaatcccgaa
     1741 gcgggcgttt gaaacaggta accctgataa atcaattgat gattccaact ttcagtgtgc
     1801 attgatcagc cttggttgaa gttctaaaga acagctcgta ggctactatg gctacagaat
     1861 tctgtttcca aattgggcta aggctcatat ggaatttttg aaataagtta aagcaaaatg
     1921 aaattagatt agtttaattt atttatccca ggtccgaaca tgtgtttttc aaaaatttca
     1981 tcaattcgtc tctagtttga aaaccataat at
//
LOCUS       DASSIK010000219         2791 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_840018, whole genome shotgun sequence.
ACCESSION   DASSIK010000219 DASSIK010000000
VERSION     DASSIK010000219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2791)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2791)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2791
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_840018"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            271..1884
                     /locus_tag="VFI64_04140"
     CDS             271..1884
                     /locus_tag="VFI64_04140"
                     /inference="COORDINATES: protein motif:HMM:NF020976.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase D family protein"
                     /protein_id="HET7242512.1"
                     /translation="MIMVIDVGRHSGLLVLLTFFTVLAIMGIPKVYGEENNNSSLRIT
                     HGIASGDVTDHSAIIWSRVNQPSIMHVEYSNDPLFSNSNSSIKWTDNATDFTGNILID
                     NLTEGTKYFYRVWFSTTDNHINSTSMNGIFKTAPNSTTSGEPISFIVGADIGGQKFCR
                     EVNKGYYIFEKMKSLSPDFYIQNGDMIYAINDCPAKRPDGHQNIPGNFSGIADANVDW
                     KNLTQVHDVYVKHWAYNRLDPHLQNFLNSTSMYSQWDDHEVINDFGGSWSYWNSLSKN
                     RTGYHNLVNEGRNAFFNFSPIEGNPDNAIKIYRSFHWGKDLDLLILDARSNRSRNDIA
                     DTPQNNKTMLGKEQVAWLKENLLNSNATWKIVSSDVPLSIPTGANASKFGRDGWANGI
                     DLDFSSKTGFERELTEIMKFIDDNDIKNVVFVTTDVHFPATLKYSADVNGDGDPVNVY
                     EIVSGPLSAFRFGIPGAPLPMLDPTFQPTILYVEGGISNFARIQILKQNDGNVHLTAD
                     IIGEDGHARAGSHLDIVPQEKIMHNFPKS"
     gene            2114..2503
                     /locus_tag="VFI64_04145"
     CDS             2114..2503
                     /locus_tag="VFI64_04145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242513.1"
                     /translation="MVSVVEILEAISDVKSLKLFNTIATKGGNSEDLSVQLKLSRKEY
                     YSRMSRLMKTGMVKRKNGKHFLTAFGKIIYDAQITVKKAVESYWKLKAIDSIDLSDEI
                     TVKERDKLIHTLLDDVEIREILSKHAS"
BASE COUNT          905 a          507 c          569 g          810 t
ORIGIN      
        1 gaaagaatcc acaatcatag tgacatcaat tgaagactgc ataaagccga tagaggaata
       61 ctttaaggca gggtttacga gaatttacgt gcaaagtacc agtcctaacg aactagaatt
      121 tattgaagaa tttagcaaaa aagtacttcc ctattttgag agcacgatga attagaacga
      181 attcggggat cgaagtacta aaatttgaat gatcgcgcaa gttctgggat tcagcaagaa
      241 aaactttcat agcagtttct cgttgacata atgatcatgg tcatagatgt aggacgtcat
      301 tcaggtctcc ttgttctctt aacttttttt actgttttgg ctatcatggg cattcccaaa
      361 gtctacgggg aagagaataa caactctagc ctgagaatca ctcatggcat agccagcggg
      421 gatgttactg accattctgc aataatatgg tcaagagtta accagccctc tatcatgcat
      481 gttgaataca gtaatgatcc attattttcc aactctaatt ccagcataaa atggacagat
      541 aatgcgacag actttacagg aaatattctt attgataatc tgacggaagg aacaaaatac
      601 ttttaccgtg tttggttttc aactactgat aatcacatca atagtacttc aatgaatgga
      661 atattcaaaa cagctcccaa ctccaccacg tctggcgaac ctattagttt catagtgggc
      721 gctgacattg gcggtcaaaa gttctgtcgt gaagtaaaca aaggctatta catatttgaa
      781 aaaatgaaat cactgtctcc agacttttat atacaaaatg gagatatgat ctacgcaatt
      841 aatgactgtc ctgctaagcg acctgatggt catcagaata ttcctggaaa cttttcaggt
      901 attgccgacg ctaatgtaga ctggaagaat ttaactcaag ttcacgatgt ctatgtcaag
      961 cattgggcat acaacagact cgatcctcat ttgcaaaatt ttctcaatag tacgtccatg
     1021 tatagtcagt gggatgacca tgaggttatt aatgattttg ggggctcatg gtcgtactgg
     1081 aattcgctga gcaagaacag aacaggttac cataatttgg taaatgaagg tagaaatgcg
     1141 ttcttcaact tttcgcccat agaaggtaac cccgacaatg cgatcaagat ctataggtca
     1201 tttcattggg gaaaagatct tgatctttta attttagatg caaggtctaa cagaagtaga
     1261 aatgatatcg ccgatactcc gcaaaacaac aagacaatgt tgggtaaaga acaagttgca
     1321 tggttgaaag agaatctatt gaattcgaat gccacatgga aaattgtaag tagtgacgtg
     1381 cctctgtcga ttcctacggg tgccaacgcg tcaaagtttg gacgggatgg ctgggctaat
     1441 ggtattgatc ttgacttttc ctcgaaaacg ggtttcgaaa gagaattaac agaaataatg
     1501 aaattcattg acgacaatga tattaaaaat gtagtgtttg ttaccactga tgttcacttt
     1561 ccagctacct taaagtacag tgcggatgta aatggcgatg gcgatccagt taatgtgtat
     1621 gaaatcgtaa gtggtcctct tagtgcattc cgtttcggca ttccaggagc gcctcttccg
     1681 atgcttgatc caacttttca gcccacaatt ttatacgtgg aaggtgggat atccaacttt
     1741 gcacggattc agatactaaa acaaaatgac ggcaatgttc acttaacggc tgacattatc
     1801 ggagaagatg gtcatgcgag ggccggctcg catctagata ttgtgccaca ggagaaaatt
     1861 atgcacaatt ttccaaaatc ctagcaaatt caccctgatc ggtgcgaaat ggaccaaatt
     1921 gaccaactat gtcattgctg tgcatgcgga ggaaatgagc catcatgaat tttcaaccat
     1981 tttttggacc caataactag atggacaatg tttgtgcgac tccaagtgaa gtatttagat
     2041 aatgtcctat actggtaaaa caacgaaaca attcagggag aatccataac taccttaact
     2101 tttataccaa tatatggtat cggtagtgga aatattagag gcaatttcag atgttaagtc
     2161 attaaaatta tttaacacta tcgccacaaa aggaggaaat agtgaggatc tctcagtgca
     2221 actcaaactc tctcgtaagg aatactattc aagaatgtca cggctgatga agacggggat
     2281 ggttaagcgt aaaaatggga aacactttct tactgcgttc ggaaaaataa tatacgatgc
     2341 acagattaca gttaaaaagg cagttgaaag ttattggaaa cttaaagcaa tagattctat
     2401 tgatttatct gacgaaatca ctgtgaaaga aagggacaag ctcattcata ctctccttga
     2461 tgatgtggaa ataagggaga tcctttccaa acacgccagt tgatacatca aatctaagtt
     2521 atgccatata cccagctttc atgtgggacg atgattgtaa tcgttactac tagttgtaga
     2581 cgatattttg attatctttg acagttaagt taaaacatta ataataatct gtggcacaac
     2641 ttacaagttc ttgtctcttt agcggcctat gcttggtctt tggttagttt tgtatgaatt
     2701 gccgtccatt ctttgattaa ctaatataca aaaacgcttg ttaattttat gcattcaagt
     2761 acgaagatta atgaaattca ctaaacacgg t
//
LOCUS       DASSIK010000220         2427 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1432222, whole genome shotgun sequence.
ACCESSION   DASSIK010000220 DASSIK010000000
VERSION     DASSIK010000220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2427)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2427)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2427
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1432222"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..455)
                     /locus_tag="VFI64_04150"
     CDS             complement(<1..455)
                     /locus_tag="VFI64_04150"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: protein motif:HMM:NF013939.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0046417 - chorismate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HET7242514.1"
                     /translation="MIDGGGLDGLRTQVRSVTEDIIHLVKKRMDTAQKIGDIKNRFDI
                     QIEDEAVEQEIQNHAQELGRQIGLDRNFIGRLLNLLLTESVRIQKNQTSKQPDKLNHM
                     TMFMRAKNLESEGKKIIHLEVGEPDYLPPRSVKDALVKAYERGQVRYTEP"
     gene            complement(448..1590)
                     /gene="aroC"
                     /locus_tag="VFI64_04155"
     CDS             complement(448..1590)
                     /gene="aroC"
                     /locus_tag="VFI64_04155"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004107 - chorismate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HET7242515.1"
                     /translation="MTRNPYIHWSMMGNILGERLVLMSFGESHGKCIGMVLDGCPAGL
                     PLSESDLQTQLNRRKPGQSIITTQRKEEDRAEILSGVFNGFTTSAPICALIWNKDQDS
                     RPYDAMKNTPRPGHADFPASVKYGGFEDYRGSGRFSGRLTATMVMAGAIAQKLLFYSL
                     GVEVIAYTSEIGGIVSKPVTFEQAKTNTYLNEVRCPDVDSAERMKSLILQARKEGDSV
                     GGIIECIATGLPVGLGEPIFSSMESDLSKALFSIPAVKGVEFGSGFGGSRLKGSENND
                     EYIVSNGKIVTTTNNSGGIIGGLTSGMPLVIRIGFKPASSIAKKQRSVDLLTRSECEI
                     TVPGRHDPCVVPRAPPVVESLVSLIISDHAIRGGFIPPILKAKKYD"
     gene            complement(1683..>2427)
                     /locus_tag="VFI64_04160"
     CDS             complement(1683..>2427)
                     /locus_tag="VFI64_04160"
                     /inference="COORDINATES: protein motif:HMM:NF012497.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242516.1"
                     /translation="EIEIKVTGKQVSRPYIYSTIATIKKFGINIQRSTDYRVLHVTNG
                     RYTHTSFTVPGDFSTAAVILSAGILLGGEIMLSGLDFSLPQGDSNILDILKKMEADVT
                     VNVKQGQIRVVGSERLEGGEFDLSDTPDLLPVVAILSLRAKSPVRIYGVSHTRFKETD
                     RLAIVASELCKLGVNLKMTNDELIIHHSGKLKSAHLNAHDDHRLFMCFVVAAMMTEKS
                     IVKGARSVDVSYPQFISEMRKLGGQIDFQ"
BASE COUNT          657 a          547 c          421 g          802 t
ORIGIN      
        1 ggttccgtat agcgcacttg gcctctctcg taggctttta ccaacgcgtc tttaaccgaa
       61 cgtggtggta aataatctgg ctcgcccact tctaaatgaa tgattttttt gccctcagat
      121 tccagattct ttgctctcat aaacatagtc atatgattca atttgtctgg ttgtttcgaa
      181 gtctgattct tctgaattct tacagactct gtaagtaaca aattcaacaa tctgccgatg
      241 aaattcctat ctagaccaat ctgtctgccc aactcttgag catgattttg tatctcctgt
      301 tctactgctt cgtcttctat ttgtatatcg aatctgttct ttatatcacc aatcttttgc
      361 gctgtatcca ttcttttctt tactagatga attatatctt cggtcactga cctcacttga
      421 gtcctaagac catctagtcc acccccgtca atcatacttt ttagccttca agataggtgg
      481 gatgaatcct ccacgtattg catgatctga tatgattaac gatactaaag attcaacaac
      541 tggtggcgct cttggtacga cacatggatc atgtctgcct ggcacggtaa tttcacactc
      601 tgagcgtgtc aataaatcca cagatcgttg ttttttggca atggacgaag ctggtttaaa
      661 tcctatccgg attaccagag gcatcccact agtcagtcct ccgataatcc cgcctgaatt
      721 atttgttgta gtaacaattt ttccgttgga gacaatatac tcgtcattat tttctgatcc
      781 ctttagcctt gatcctccga aacctgaacc aaattcgacc cctttaacag caggaatgct
      841 aaaaagagcc ttacttagat cggattccat cgacgagaat attggttcac ctaatcccac
      901 aggtagtcct gtcgctatgc attctatgat accacccact gaatcgcctt ctttccttgc
      961 ttggagaatg agagacttca tacgctctgc cgaatctacg tcaggacatc gtacttcgtt
     1021 caagtatgtg ttagtcttag cctgttcgaa cgtgactggt tttgatacta tcccaccaat
     1081 ttctgatgtg tatgctatta cctctactcc taatgaataa aataataact tttgtgcaat
     1141 tgctcctgcc attaccatag tagcagtcaa tctaccagag aatctaccac taccgcgata
     1201 gtcttcaaaa ccaccatatt tcactgacgc aggaaaatcc gcatgtccag gtctgggtgt
     1261 attcttcatt gcgtcgtaag gtcttgagtc ttgatcttta ttccaaatta gtgcacatat
     1321 tggagctgaa gtggtgaagc cgttaaatac tcccgataaa atttcagctc tgtcttcttc
     1381 tttcctttga gtagtaatta ttgattgtcc gggcttcctc ctattcaatt gggtctgtaa
     1441 gtctgattcg gataagggta aaccagcggg acaaccatcc aaaaccattc cgatgcattt
     1501 accatggctt tctccaaaac tcatgagaac aagccgttca ccaagaatat ttcccatcat
     1561 gctccaatga atgtaagggt ttcttgtcac atatattggc tttatgtttc aaagttctaa
     1621 ggattagatt cctactatgc tacccccagg ttgagaatag ttcgagttaa ttttttatag
     1681 gtttattgga agtcaatttg gcctcctaat tttctcattt cagatatgaa ttgagggtat
     1741 gatacatcaa ctgatctagc tccctttaca attgactttt cagtcatcat ggctgctaca
     1801 acaaagcaca taaagagccg atgatcatca tgagcattta gatgtgcact ttttaatttt
     1861 cctgaatgat ggattattaa ttcatcatta gtcattttca agtttacccc taatttgcat
     1921 aattctgatg ctacaatagc caacctatct gtttccttaa agcgagtatg agaaacacca
     1981 taaattctca ctggggattt ggctctcaat gacaaaattg caactacagg aagcaaatct
     2041 ggagtatctg agaggtcaaa ttcgccgcct tccaaacgtt ctgacccgac tacccgaatt
     2101 tgaccttgct taacattaac cgttacatca gcttccattt ttttcaaaat gtctagaata
     2161 ttagaatctc cctgaggcaa tgaaaaatct aatccagaga gcatgatctc accgcctaaa
     2221 agaatcccag cagacaaaat tactgctgct gtggaaaagt ctcctggaac agtaaatgaa
     2281 gtatgagtgt acctgccatt agtaacatgt aagactctgt aatcagttga tctttggata
     2341 tttattccaa atttttttat tgtggcaatt gttgagtata tgtaaggacg tgatacttgt
     2401 tttccagtta ccttaatttc tatctct
//
LOCUS       DASSIK010000221         2077 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1432246, whole genome shotgun sequence.
ACCESSION   DASSIK010000221 DASSIK010000000
VERSION     DASSIK010000221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2077)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2077)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2077
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1432246"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            41..697
                     /locus_tag="VFI64_04165"
     CDS             41..697
                     /locus_tag="VFI64_04165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242517.1"
                     /translation="MNIFSSHPAVGRKKLLIRRIDDSSIRMRNIILSTITLFSIFCVL
                     YIEPIYGQSFENWRSYTDPAKRFTLFYPPDLETKGRENFLSSVALTLGNQNFPREFKI
                     TITYNDDDASLLNYAQGLEISPDNYLLAVEDQLKASYQIYNLEEKLLHSNNLYGFPTV
                     SNSVDYTNYLGESGRTKNVLAIVNGKGSFLFSYSNNLDAYDEYLPTINQIIKSIVILK
                     "
     gene            755..961
                     /locus_tag="VFI64_04170"
     CDS             755..961
                     /locus_tag="VFI64_04170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242518.1"
                     /translation="MFERKVEDIPNYPNYYSVPGAMVGAKKDFFAFNPAFYKPQQFLY
                     RHLRSQHSSSVFAELFGRADLISQ"
     gene            complement(1239..1493)
                     /locus_tag="VFI64_04175"
     CDS             complement(1239..1493)
                     /locus_tag="VFI64_04175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242519.1"
                     /translation="MIQTQGFASSQSIGSLTDEINRWLVSNTQGMDTKFRLINIKYAS
                     TAEPIQNGSHVNYSALVIYEIVEIKKTDVSSEPLDATGVE"
     regulatory      1599..1688
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01734"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Fluoride riboswitches increase expression of
                     downstream genes that help mitigate the toxic effects of
                     very high levels of fluoride; They are found in a wide
                     variety of bacteria and archaea; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="fluoride"
                     /db_xref="RFAM:RF01734"
     gene            1740..>2077
                     /gene="crcB"
                     /locus_tag="VFI64_04180"
     CDS             1740..>2077
                     /gene="crcB"
                     /locus_tag="VFI64_04180"
                     /inference="COORDINATES: protein motif:HMM:TIGR00494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:1903425 - fluoride transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:1903424 - fluoride transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HET7242520.1"
                     /translation="MAVGALAGAFLRYKMVSSPVVVATLPLNILAVNVVGSFVLGVFS
                     ILSVVWNLDTKYFLLIAVGFCGSLTTMSSFVLESLNLLDNKQFSIFGLNILANVGLSL
                     GAIIMGRILAS"
BASE COUNT          623 a          386 c          388 g          680 t
ORIGIN      
        1 taataattga acaatatctt gacaaacata atcatgggga atgaatatat tctcatctca
       61 cccagccgtg gggaggaaaa aattattaat aaggcgaatt gatgattctt ctataagaat
      121 gcgtaatatc atactatcga caattaccct gttttccatc ttctgtgtct tatatattga
      181 gcctatttac ggtcagagtt ttgagaactg gcggagctac actgatcctg caaaacgatt
      241 taccttattt taccctcctg atttggaaac aaaaggaagg gaaaattttc taagcagcgt
      301 ggctctgact cttggtaatc agaattttcc tagagagttt aaaattacca taacatataa
      361 cgatgatgac gcatcactgc taaattatgc tcaaggcctc gagatctcac cagacaatta
      421 tctgctagcc gtagaagatc aactgaaagc atcttaccaa atttataatt tggaagaaaa
      481 acttttacat tcgaataatt tgtatgggtt tcctacagta agtaacagtg tagattatac
      541 aaactacctt ggagaatccg gacgaactaa gaatgttctt gcaattgtta acggtaaagg
      601 ttcatttttg ttttcttatt ccaataatct agatgcctac gacgaatatc tgccaaccat
      661 caatcaaatc ataaagtcca tagtgattct aaaataagat agaacgcgac atcttttgaa
      721 tttctttaga aattcctgat tcacagtcct cgtgatgttt gaacgaaaag ttgaagacat
      781 tccaaattat cccaattatt atagcgtacc tggtgcaatg gtaggagcaa agaaggattt
      841 tttcgccttc aatcctgcat tctataagcc acaacaattc ctttaccgtc atctcagatc
      901 tcaacactct agtagtgtgt ttgctgagtt attcgggagg gcagatttaa taagtcaata
      961 gaaataattt cactttcctg ttctttactt cattcaatgg caccggccga tctggtcaat
     1021 gtcattagtt agtcgtcttt gtaatcgtac tttaatctag accaacattt gttttaatca
     1081 aagatatctt tttgtcaaaa ccatgatata gtttgttagg cttgggttgt aagaccttga
     1141 ccgggtttat ttgcacaggc tggaggttgt tgacaacacc aatgccaacc tccggcttaa
     1201 ttctaatcaa caatggcaaa aaaattatgg actggaatct attctactcc agtcgcatct
     1261 agcggttcgg atgaaacatc tgttttcttg atttcgacga tttcatatat gacaagtgcg
     1321 gaatagttca catggctacc attctggatc ggctcggcag ttgacgcgta ctttatattt
     1381 attagtctaa atttagtgtc cattccttgt gtattactca cgagccatct attgatttca
     1441 tcagtcagcg aacctatgct ctgtgaagat gcaaaacctt gggtttgtat cattaataga
     1501 cagtagcaat tatatcataa aacagttcgt tttatctttc agacaatcta aaaacatatg
     1561 gtctggagaa gaactttaaa tattaccggc cgaattgttt atggtaaggc tatggcatta
     1621 gccctggatt ggagaaatca gtaatcttaa tcctgaaccg ctaacaagct gataatgcct
     1681 accagcaaaa tttgaatggt gggtgagaaa caaaaattaa aggtattgaa tttctcttat
     1741 tggcagtagg tgccctagcg ggggccttcc tcagatacaa gatggtatcg tcgcctgtag
     1801 tggtggcaac gttaccactg aatattctag cagtaaacgt agtaggtagt tttgtattgg
     1861 gagtattttc aatattgtcg gttgtttgga atcttgacac aaaatacttc cttcttattg
     1921 cagttgggtt ctgcggctct ctgactacta tgtcttcctt cgttctcgaa tcattaaatc
     1981 ttttggataa taaacaattt tcaatctttg gattaaacat attagcaaat gttggattgt
     2041 cattaggtgc aatcattatg ggcaggatcc ttgcttc
//
LOCUS       DASSIK010000222         2480 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_736275, whole genome shotgun sequence.
ACCESSION   DASSIK010000222 DASSIK010000000
VERSION     DASSIK010000222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2480)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2480)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2480
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_736275"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..722)
                     /locus_tag="VFI64_04185"
     CDS             complement(<1..722)
                     /locus_tag="VFI64_04185"
                     /inference="COORDINATES: protein motif:HMM:NF013799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide pyrophosphatase/phosphodiesterase
                     family protein"
                     /protein_id="HET7242521.1"
                     /translation="MDKHLIVVDIAGLEPGLISEDRTPNICSLSAKGEFARVRPVFPA
                     VTCTSQASMLSGTYPRQHGIISNGLYDRQTHTVSFWEQSSSLVQAEKVWDIAKKGGSG
                     RTTAALFWQNTMYADADVVLTPRPLHMEDRMIMWCYSRPPGLYEKISYEIGKFDLSTY
                     WGPFASNKSSAWIGRATELVLERQKPNILFTYIPHLDYIFQREGIFPKNLKEEIRFVD
                     NIVGNIMKKTIDLGIRDQTQFV"
     gene            complement(771..1667)
                     /locus_tag="VFI64_04190"
     CDS             complement(771..1667)
                     /locus_tag="VFI64_04190"
                     /inference="COORDINATES: protein motif:HMM:NF013226.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiA family prenyltransferase"
                     /protein_id="HET7242522.1"
                     /translation="MGTIRDYLALVRFPNLFTIPSNIMVGFSQVVLFPEARIENLLLL
                     TITSILLYMVGIIINDYRDLELDRKERPDRPLPSGRISRQSALAFAFIATILAIILVT
                     FVSISSVLLALILLITIVAYDCWLKNNILGYFTIALARVFNVVLGCSPGITILISNQN
                     DLAKISVILVSTFLYVTAISYMSRIEVGPSPKKSNFQISVVLLSLIPAILTFFTLIGY
                     FKWDLFLFLVIFIGMLIGSLVRKYGSSDPKVIRKIVRNLVLSIIILDSAFMGGTLGFA
                     YGLSLLVLLIPAVILSRRFYVT"
     gene            complement(1831..>2480)
                     /locus_tag="VFI64_04195"
     CDS             complement(1831..>2480)
                     /locus_tag="VFI64_04195"
                     /inference="COORDINATES: protein motif:HMM:NF013429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase family
                     protein"
                     /protein_id="HET7242523.1"
                     /translation="IAVSNLNAFTLYAIGDVYHPSWIEEDLELRRLRIKHTIECVKMA
                     AKLGSKIVSTEPGGPIISSSQNREQLLKTFIDSLTEVVPIAEKERVKILIEPEPELLI
                     QNSQEFIELMNMIESPCIKLNFDIGHFFCVGEDLCKTIYKLADYIEHFHIEDISKERI
                     HKHLLPGEGVIDFKSVFRTIRDVGFDGFATVELYPYQECPEYVAMKSIEFLNDLV"
BASE COUNT          790 a          487 c          434 g          769 t
ORIGIN      
        1 atgacaaatt gagtctggtc acgtattcca agatctattg tcttcttcat aatgttacca
       61 acgatgttat ctacgaatct gatttcctcc ttcaaatttt tggggaaaat tccctctcgt
      121 tgaaaaatat agtccaggtg aggaatataa gtgaataaga tgttaggttt ttgcctctcc
      181 aaaactagtt ctgtggccct tccaatccac gcactggatt tattggaagc aaaagggccc
      241 caatatgtag acaaatcaaa ttttcctatt tcataagaaa ttttttcata caatccagga
      301 ggtcgggaat aacaccacat tatcatccgg tcttccatat gaagaggtct tggtgtcaat
      361 acaacatcgg catcggcata cattgtgttc tgccagaaaa gcgcagcagt cgttcgacca
      421 gatcctcctt ttttggcaat atcccatact ttttctgctt gcaccaaact gcttgactgt
      481 tcccaaaatg agactgtatg agtttgtctg tcgtatagtc cattggaaat gataccatgt
      541 tgtcgaggat atgttcctga taacatacta gcctgtgaag tgcaggtaac ggcaggaaat
      601 actggtcgga ctcttgcgaa ttcacccttc gcagagagac tacaaatatt aggtgttcta
      661 tcttcagaaa tgagtcccgg ttcaagaccg gcaatgtcaa cgactattag atgtttatcc
      721 ataacgatag ccaacaagaa catttatttt ttgtaataaa ttcctttacc ctacgttaca
      781 tagaatcttc ttgagagaat aactgcaggt attaacaata ctagtaaact aaggccataa
      841 gcaaatccca gtgttccacc cataaatgca gaatctaaaa ttattatcga taataccaaa
      901 ttgcgaacta ttttccttat cacttttgga tcggaagagc catattttct aacaagactc
      961 ccaatcaaca ttccaataaa aataactaaa aacaagaata gatcccattt aaagtaccct
     1021 ataagtgtaa aaaaggtcag tatcgcagga attaatgaaa gtaaaacaac agatatttgg
     1081 aaattggatt ttttgggtga tggccctacc tctattctac tcatgtaact tattgcagta
     1141 acatataaga atgtacttac caggattaca cttatcttcg cgagatcatt ttggttacta
     1201 atcaaaatag taataccggg actacaacct aagacaacat tgaaaactct agctaaggct
     1261 attgtgaagt atcctagaat gttatttttt agccaacagt catatgctac gattgtgatt
     1321 agaagaatca gggccaacag tacacttgag atgctcacaa aagtcacgag aattattgcc
     1381 aaaatcgttg caataaaagc aaatgccaat gcgctttgtc gagatatcct tcctgagggt
     1441 agtggtctgt cagggcgctc ttttcgatct agttctagat cacgataatc attaatgatg
     1501 atacctacca tatacaacag aatagatgtg atagtcaata aaagtagatt ctctattctt
     1561 gcctctggga aaagtactac ttggctgaat ccaaccatta tattcgacgg aattgtaaac
     1621 agatttggaa acctaactaa ggccagatag tctcttattg tacccattcc tattcacagc
     1681 atgacatttg aagatattca cttgtggaaa aaaccttgat atttcgtaag aactctctag
     1741 atgttgaaag catgagtaac gtgttacggc ttcggtatat ttatgatatt cgaattcaag
     1801 gtattatcta acaaaactgc gattaaatta tcataccaga tcattgagaa attcgattga
     1861 cttcatagcg acgtattcgg gacattcttg atatggataa agttctacag tagcaaatcc
     1921 atcgaagcca acgtctctta tcgttctgaa aacagattta aaatctatga ctccttcgcc
     1981 gggtaaaagg tgtttgtgaa ttctttcttt tgaaatgtcc tcaatatgaa aatgttcgat
     2041 ataatcagct aatttgtaaa tggttttaca tagatcttct ccaacacaaa agaaatgtcc
     2101 gatatcaaaa tttaacttta tgcacggaga ttcaatcata ttcattagct caatgaattc
     2161 ttgcgaattt tgtattaaca attctggttc aggttcgatc aatattttta ctctctcctt
     2221 ttcggcgatt ggtaccactt cggtcaacga atcaatgaaa gtcttaagca gttgttctct
     2281 attttgagaa ctagatataa tcggtcctcc cggttcagtt gagacaattt ttgaaccaag
     2341 ctttgcggcc atcttcacac attctatggt gtgcttgata cgcaatctac gcagctccaa
     2401 atcctcttcg atccaagaag gatgatatac gtctccaatt gcatatagtg tgaaggcatt
     2461 aagattcgaa acagcaatgc
//
LOCUS       DASSIK010000223         2239 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_840891, whole genome shotgun sequence.
ACCESSION   DASSIK010000223 DASSIK010000000
VERSION     DASSIK010000223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2239)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2239)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2239
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_840891"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..680)
                     /locus_tag="VFI64_04200"
     CDS             complement(<1..680)
                     /locus_tag="VFI64_04200"
                     /inference="COORDINATES: protein motif:HMM:TIGR03709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0016776 - phosphotransferase activity,
                     phosphate group as acceptor [Evidence IEA];
                     GO_process: GO:0006797 - polyphosphate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PPK2 family polyphosphate kinase"
                     /protein_id="HET7242524.1"
                     /translation="MISKKLLFNAHNDANLLKWDPDNTFNRNPKDLETGLTKLFTRMS
                     ELQYRMYVEKKTSILIILQGMDTSGKDGTIRHVITAFHPVSCRVETFKIPSTEDLAHD
                     YLWRIHKVVPQRGFIGVFNRSHYEDVVEVRVQNLVPRTVWSQRYDQINQFERYMAENN
                     VKVIKFFLHISKQEQKKRLLERLSDPAKRWKVNEDDFKKRKKWDQYMQAYGDALSSCS
                     TRWAPWYM"
     gene            1075..1965
                     /locus_tag="VFI64_04205"
     CDS             1075..1965
                     /locus_tag="VFI64_04205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242525.1"
                     /translation="MTKRSSYLIGRKNVIIVGIIIAVIVSSYYFVWSITKPFLFVTNS
                     GKLLDKFGILEIYPTKSGGREWFISMADPKTDGIFNPKSNITKQPDGSWQISGRPNIG
                     KYNYEVRMNVNTPPGAEEWKNVEITGYARVVSAEPPYNSLVWYARGGRHDSSIPCEGT
                     SLKGGIKVNGVVSWAKEIWHTGGYTDKRAEAQVTNSLIGRWIGWKIVIYNIDNNNAVK
                     MESYLDDKANNKWIKVTDLIDNGGWYSNSPDSVFYSANCGKPKDYVITNAGPIITFRS
                     DNIVWDFKNLSVREIQSPTN"
BASE COUNT          670 a          392 c          427 g          750 t
ORIGIN      
        1 atcatatacc agggtgccca acgcgtactg cagctactaa gtgcatctcc gtaggcttgc
       61 atatattgat cccatttttt tctcttttta aaatcgtcct cgttgacttt ccatcgtttt
      121 gccggatcag acaatctttc aagtaatctt ttcttttgtt cttgtttact aatgtgtaga
      181 aaaaacttta ttacctttac attattttca gccatatatc gttcgaactg attgatttga
      241 tcgtatcgtt gtgaccaaac tgttcgaggt accaaatttt ggacacgaac ttcaacaaca
      301 tcttcatagt gtgagcgatt aaatacccca ataaatcctc tttggggtac aaccttatga
      361 attctccaca agtaatcgtg tgctaagtct tctgtagatg gtattttgaa ggtttcgact
      421 ctacaactaa caggatgaaa tgcagttata acatgcctta ttgttccatc ctttccagag
      481 gtatccatac cttgaagtat aatgagaatc gaggtttttt tctcaacata cattctatat
      541 tgcagctctg acattcttgt aaaaagttta gttaatccag tttcgagatc ctttggattt
      601 ctgttaaacg tattatctgg atcccacttt agaaggttcg catcattatg agcattgaat
      661 agtaattttt ttgatatcat tcatttgtca tccttatggt aaacttgctt tttattaaat
      721 cgtcgtaatt taatatcgct gtgggtagtt ccgccataaa tgggatcaaa atgcataaaa
      781 acagaataat gtttattgtc cctgcggtat tcctacctta ttggccactc aatttaagtg
      841 gcaggtgatg gtattaatga tccctatatg gaataggcat ggttggcgag taaagatcca
      901 tttccagcaa gatgatggac caactctaag gaggcagttg gttgccattg aaatttatta
      961 taatgatatc ataactgagg gttactttgt tagcttgctt tttgcaatac actttatgaa
     1021 catggagatt gagcttgtct tcaattaccc ccactaaact ctattaatat taaaatgact
     1081 aagaggtctt catatctaat tggaaggaag aacgtcataa tagtgggtat cattattgca
     1141 gttatagtgt catcttatta ctttgtctgg tccattacaa aaccctttct ttttgttact
     1201 aatagcggta agctgttaga taaatttggg atactagaga tatatcccac taaatcagga
     1261 ggtcgagaat ggtttatcag tatggccgat cccaaaactg atgggatatt caatcccaaa
     1321 tccaacataa ctaaacagcc cgacggttca tggcaaataa gtgggaggcc aaacattggt
     1381 aagtacaatt acgaggtaag aatgaatgtt aatacccctc cgggagctga agaatggaag
     1441 aatgttgaaa ttaccggata tgctagagta gtatccgcgg agcctccata caattccctt
     1501 gtatggtatg caaggggtgg aaggcatgat agttctattc catgtgaagg tacttctctg
     1561 aaaggcggaa tcaaagttaa tggagttgtc tcttgggcaa aggagatatg gcataccggt
     1621 ggttatactg ataaacgagc ggaagcccaa gttacgaatt ccctcattgg tcggtggatt
     1681 ggatggaaga ttgtaattta taatattgac aacaataatg ccgtcaagat ggagtcatat
     1741 ctcgatgaca aggcgaacaa taaatggatt aaggtaacag atttaataga taacggtggt
     1801 tggtactcta atagtccaga ttcagtattt tatagtgcaa actgcggtaa acctaaagat
     1861 tatgtaatta caaatgcagg tccgataatc acatttagat ctgacaatat agtatgggat
     1921 ttcaagaatt tgagtgttag agaaattcaa tcccccacaa actgattcgt cgtggtatct
     1981 ggtctacaat atcattaatc atgcattgaa taaaatgatg gattatattc tgcaatatta
     2041 ctctcatttt gggatagaat ttcatcgcca atctttttct tacaaggttt catttttcca
     2101 gtattatatc tactgctcta tcttagcgat tagttgtgga aatacttcta tccaattttg
     2161 gatttaagat tcttcaatca gatcctcaat ggttctgatc atacctaata gagcattacg
     2221 atgtatcttg atgattatt
//
LOCUS       DASSIK010000224         2783 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1226834, whole genome shotgun sequence.
ACCESSION   DASSIK010000224 DASSIK010000000
VERSION     DASSIK010000224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2783)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2783)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2783
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1226834"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..197
                     /locus_tag="VFI64_04210"
     CDS             <1..197
                     /locus_tag="VFI64_04210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242526.1"
                     /translation="VLKRSKYSHANESYEWDRTQEYLLVTPVLPIHVNLNLMMHRINW
                     YSIDSVKVFFSIIASGRAGL"
     gene            513..1976
                     /locus_tag="VFI64_04215"
     CDS             513..1976
                     /locus_tag="VFI64_04215"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HET7242527.1"
                     /translation="MESKMPDYDIIIAGGGLAGMIVASSAAYYSNQTLKILVIDRNLP
                     PELGKKTVSGWICGDAVGKKSVDFMTSRIGIAWDSPEIEHPVKGVVAYSPNHETSISF
                     DGEGYILNRKLLPQKQLKDVLKLGVEMKYNVALRNLLVEDGAVIGVEGEDMENKSPIR
                     KTSKVVVDCTGVTSVLRTNLPIKSFIQRRIDRDDLEATGRYIYSFERGNEDETFFDPD
                     YCIIHLDQRLAPGGYAWVFPKGTNKVNVGLGVQQRALDTFNKSNGTHKNLRTLIDDYV
                     GINPVIKNPRIVDSEADNGNAWGTWQVSVRRQNDCLVANGYILVGDSAWMPKPLDAGG
                     IGPAIIAATIAGEDAVQAIEAGDCSESSLWRYNKHFIDAYGYKTAGLEVFRRMLQGLN
                     NDQINYGMKHFLSKFDIDKITNGEHPEFGMVDKVSMLIRGAINKRLAEDLKYTARVNK
                     QLVDHYHDYPADPVRFPEWQKVLSNHMDEALVHFESS"
     gene            complement(1988..2641)
                     /locus_tag="VFI64_04220"
     CDS             complement(1988..2641)
                     /locus_tag="VFI64_04220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HET7242528.1"
                     /translation="MLSNVTSDLEKINDSLKDLEGRRESLIKGTMDVVILCAKGIVSI
                     HNGDNIEAEKMFSQAKDLLANFKNIARTDLAKYLSVPEQELTEGLSLLSIVRCSEIPS
                     MGDIDVDGPSYVLGLLDCIGEIKRIIYDKLRKNKVEDIENLFKIMDDIYGSIYPLAVF
                     DNLVPGLRKKLDVSRHLIEDVRSMMTEEERRRVLMKRIDAFAETPQPLPAEDRQQKN"
BASE COUNT          860 a          527 c          566 g          830 t
ORIGIN      
        1 ctgttttgaa gagatcaaaa tattcacatg caaatgaaag ttatgaatgg gatcgaactc
       61 aagaatatct actagttaca cccgtattac ctattcatgt caatttgaac ttgatgatgc
      121 acagaataaa ttggtattcc attgactctg taaaagtttt tttcagtata attgcgtcag
      181 ggcgtgctgg tttgtgatca aatatgaatc ctccaacgcg gtgacgtgtt cttcgagaag
      241 attcatgtta taatgatacg gaaatatccc aaatgtttct gctcaaattt ataaacgaat
      301 tttcctgcgt gcacaattcc ttcagaccaa cattttacag caagtttcat actatgttct
      361 ttaaccacga gcaatgtcga cgaaattatt ctcttaacga ttgattttga tacaattcca
      421 gcaggtttat cgaacttgcc ctaacacatg tcgtttggtc gtttacttag ctttaaataa
      481 caagaaaata ttttgtgagc tgatcttaat atatggaatc caagatgcca gattatgaca
      541 tcataatagc aggaggcggg ctggcgggca tgatagtagc aagctcggct gcatattatt
      601 ctaatcagac tttaaaaata ctggtaattg acaggaattt acctcccgaa ttaggaaaga
      661 agactgtttc gggatggata tgtggagatg ctgttggaaa aaaaagtgta gattttatga
      721 cttcaagaat agggattgct tgggactcgc ctgaaattga acatccagtc aagggagttg
      781 tagcgtattc tccaaaccac gaaacatcta tttcttttga tggagaagga tacattctca
      841 atagaaaact tttgcctcaa aaacaactca aagacgtgct gaaattgggg gtagagatga
      901 agtacaacgt tgcgttaaga aatctcctgg tagaagatgg cgctgtaatt ggtgtagaag
      961 gagaggatat ggagaacaaa tctccaatta ggaagacgtc taaggtggtc gtcgattgta
     1021 ctggcgtaac atcggttctt cgtactaacc ttcctataaa gtcatttatc cagcgcagga
     1081 ttgacagaga tgatttagaa gccacaggca gatacatcta cagctttgaa cggggaaacg
     1141 aagatgaaac attttttgat ccagattact gcataattca ccttgatcag agactagctc
     1201 ctggtggata tgcatgggtt tttcccaagg gtaccaataa agtaaatgtt ggcctgggag
     1261 ttcaacaacg agcattggat acttttaaca aaagtaatgg aacgcacaag aatctcagaa
     1321 cactcataga cgattacgta ggaatcaatc ctgtcatcaa aaatcctcga atcgttgatt
     1381 ctgaagccga taatggaaac gcatggggaa catggcaggt ctccgtaaga aggcagaacg
     1441 actgcctagt tgcgaatggc tatatattgg taggggattc agcgtggatg ccaaaacctt
     1501 tggatgctgg tggaatagga cctgcaatta ttgctgctac catcgccgga gaagatgctg
     1561 tacaagcaat cgaggctggg gattgctcgg aaagctcatt atggcgatac aataaacatt
     1621 ttatcgatgc atatggttac aagacggcgg gacttgaagt ttttcgcagg atgctgcagg
     1681 gcttaaacaa tgatcaaatt aattacggta tgaaacattt tctgtccaaa tttgacatag
     1741 ataaaattac aaacggtgaa catcctgaat ttggcatggt tgataaagtc agcatgttga
     1801 taaggggagc aattaacaag cgattagcag aggacttgaa atatacggca cgagtcaata
     1861 agcaattggt tgatcattat cacgattatc ccgccgatcc agttcgattt cccgaatggc
     1921 aaaaagtcct ttccaaccac atggatgaag cattagtcca ttttgaaagt tcttagttat
     1981 ttttatctca atttttctgc tgtcgatcct cggctgggag gggctgcgga gtctctgcaa
     2041 acgcatctat tctcttcatc aggactctcc ttctttcttc ctcagtcatc attgacctta
     2101 catcttctat caggtgtctt gatacgtcca atttttttct taatcctgga accaaattat
     2161 caaatactgc aagtggatat attgatccgt agatatcgtc cataatctta aaaagatttt
     2221 cgatatcttc caccttattt tttctaagtt tgtcgtaaat aattcgcttg atttcaccaa
     2281 tacaatccaa gagacctaga acgtaagaag gaccatccac gtctatatcg cccatactag
     2341 gaatctcgga gcatcttaca atcgaaagaa gcgatagtcc ttcagttagt tcttgttctg
     2401 gaaccgacaa atacttggct agatccgttc ttgcaatatt tttaaaattt gcgagaagat
     2461 cttttgcctg tgaaaacatc ttttctgctt ctatgttatc gccattatga atggatacaa
     2521 tacctttggc gcataaaatg actacgtcca ttgttccttt gatcagagat tctcgtctgc
     2581 cttccagatc tttcagcgaa tcattgattt tttccaagtc tgatgtcaca ttcgataaca
     2641 tggcatagtg tattatttga ctgtgatata atcgctctac aagtagcaga gtgcacaatc
     2701 agaatattgt ccaagtcaga aaactatcat attacaccta gaaattttct cagccaccgc
     2761 aaaaaaaaaa taaaaaaagt cta
//
LOCUS       DASSIK010000225         2343 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1347494, whole genome shotgun sequence.
ACCESSION   DASSIK010000225 DASSIK010000000
VERSION     DASSIK010000225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2343)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2343)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2343
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1347494"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(104..505)
                     /locus_tag="VFI64_04225"
     CDS             complement(104..505)
                     /locus_tag="VFI64_04225"
                     /inference="COORDINATES: protein motif:HMM:NF018893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1428 family protein"
                     /protein_id="HET7242529.1"
                     /translation="MGTERKENGERSIGSEVDHFIYRVPKKNHDAMVQINKQFADMIT
                     KYGATHLVFQLNSTKTPMDGIANIAKTIAAADDEEVWLELILYRDRKHKDEIGTKMRN
                     DESMGPLYQQSLNLVAPGTGFILGEFTRLMI"
     gene            827..1312
                     /locus_tag="VFI64_04230"
     CDS             827..1312
                     /locus_tag="VFI64_04230"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HET7242530.1"
                     /translation="MSQYYLNEEKVKLRHAKAIDVRGIIELLTQLERPLPKDRYENKK
                     IQKLTKGYIWSKSTKGNHGIILAIKGAKIIGLVSFTLTERLNQPLREFWIPELVVSKE
                     YRSQGTGKLLIQKCESIAKRKKCYRIRLESRNDRIDSHNFYKKMGFQQIALVFEKKLG
                     K"
     gene            complement(1344..1802)
                     /locus_tag="VFI64_04235"
     CDS             complement(1344..1802)
                     /locus_tag="VFI64_04235"
                     /inference="COORDINATES: protein motif:HMM:NF019928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HET7242531.1"
                     /translation="MSGEDEVEDQKMEIRKSIVIDASPEVVFKAITEPEELTRWFPDQ
                     AILESRVGGRMKFSFYKDSKNTHRDMDYFPEGTITEFIPGKKISYTWVHPNIPDFPRT
                     VVTWELEKIENNRTKLKLVHIGFKADKMLKEHDEGWTYFLDELAKYCKGR"
     gene            1875..2186
                     /locus_tag="VFI64_04240"
     CDS             1875..2186
                     /locus_tag="VFI64_04240"
                     /inference="COORDINATES: protein motif:HMM:NF033788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metalloregulator ArsR/SmtB family transcription
                     factor"
                     /protein_id="HET7242532.1"
                     /translation="MGSPWKALSDDNRRRIMLLLKKKEIITPTEIAHHFNFTMSGVSI
                     NLRILKEANLITEKREGKNKLYSLNRTTTAELARFFDDMYDYKLKSLKEYIENKERKR
                     K"
BASE COUNT          743 a          421 c          424 g          755 t
ORIGIN      
        1 aaagctcctt gaactggagt ttgtgtatca tcttctccca ttctaacaac aagccaacct
       61 ccagttagta aatttcaagt ttttcgattc gatctccttt tgtctatatc atgaggcggg
      121 tgaactcgcc taggatgaag cccgttcctg gagcgacgag attcaaagat tgttggtaaa
      181 gtggtcccat gctttcgtca tttcgcatct ttgttccgat ttcgtcttta tgtttacgat
      241 cccgatacaa tattagctcc agccaaactt cttcatcgtc agcagcagca atagttttgg
      301 ctatattggc tataccatcc ataggcgtct tagtactatt caactggaaa actaagtggg
      361 ttgctccata tttcgtgatc atatcagcaa attgtttatt gatctgcacc attgcatcat
      421 ggttcttttt tggtactcgg tagataaagt ggtcgacttc actaccaatg ctcctctctc
      481 cgttttcctt tctttctgtc cccatttcta attctctatc tactattcct tgtacaggta
      541 ttttaagaga taagtggcct gatcgtaact agatgaagtt tttgtcagtt ggtaaaatgg
      601 aatgaaggac ctacatcttc ctccagttgt gctctttgtg ccacattgtt gtccatttca
      661 gcgattatta ccatcgctca tcgctaatct gtgattgaaa ttaaagactt tgacggaaat
      721 ggaaaaactc tgttttttga ataaatggat tgactcaatt taattagttg ttttttagta
      781 ccgttatgga aacttattag tccagctcat acatataaca cctcgtatgt ctcaatatta
      841 tttgaatgaa gagaaagtga aattaagaca tgccaaagca atagatgtca ggggcataat
      901 agaactacta acacaattag aaaggccttt accaaaagac agatacgaaa ataagaaaat
      961 tcaaaaactc accaaaggat atatctggtc taaatctact aaaggtaatc atggtatcat
     1021 tctggcaatt aaaggtgcaa aaataattgg actggtttca ttcacattaa ctgaaagact
     1081 taatcagcct ttgagggagt tctggattcc agagctggta gtttctaaag agtacagaag
     1141 tcaaggtaca ggcaaactac tgattcaaaa gtgcgaatca atcgcgaaga gaaagaagtg
     1201 ttatcgcata agacttgagt cgagaaatga tagaatagat tcacataatt tttacaagaa
     1261 aatgggattt caacaaattg cattagtctt tgaaaagaag ttaggaaaat aaaaaataaa
     1321 aaaggtggag tttggtttgt ttattatctc cccttacaat attttgctaa ttcatccaag
     1381 aaataagtcc agccttcatc atgctctttg agcattttat ccgctttaaa tcctatatgc
     1441 actaatttta atttggttct attattttca attttctcaa gttcccaagt tacaacagtt
     1501 cttggaaagt caggtatatt gggatgtacc catgtataag aaattttttt gcctggtata
     1561 aattcagtaa tagttccttc tgggaaataa tccatatctc tgtgcgtgtt ttttgagtct
     1621 ttgtaaaaac taaatttcat ccgtcctcct actctcgact ccaaaattgc ttgatcagga
     1681 aaccatcgag ttagttcttc cggttcggtt attgccttga aaactacctc gggtgaagca
     1741 tcgataacta ttgatttcct tatctccatt ttttggtctt ctacttcgtc ttctcctgac
     1801 atcaattatt ctgattattc gatatattta aacatttata tagttctata actatcaaga
     1861 tatagaatac gtatatgggt tcgccttgga aagcactttc agatgataat aggagacgaa
     1921 ttatgttact gcttaagaag aaggaaatca tcacacctac tgaaatagca caccacttta
     1981 attttacaat gtcaggagta tcaattaatc ttcgcatttt gaaagaggct aatttgataa
     2041 cagaaaaaag ggaaggaaaa aacaaattgt actcattgaa ccgaacgacc accgcagagc
     2101 ttgcacgatt ctttgatgac atgtatgatt ataagttgaa atcgttgaag gaatatattg
     2161 aaaacaagga aaggaaaaga aaataatgac tgaatcgtta gtagatcaca agattgtttc
     2221 agagaaggaa tggatcaagg ctcgcaaatc gctgttaaag aaggaaaaag agtttacagt
     2281 aatgcgcgat caacttaacc aacagcgacg cgaattgcct tggaaggctg ttaataaaga
     2341 gta
//
LOCUS       DASSIK010000226         3108 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_936909, whole genome shotgun sequence.
ACCESSION   DASSIK010000226 DASSIK010000000
VERSION     DASSIK010000226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3108)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3108)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3108
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_936909"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..596
                     /locus_tag="VFI64_04245"
     CDS             <1..596
                     /locus_tag="VFI64_04245"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HET7242533.1"
                     /translation="AIETMKKSVEKIEVLVSDMLDIHKLEIERLRLSKTNIDVREIID
                     QAMSEMLPLAKTKNVNLVSEISVTGTVFCDPKRIGQVICNLIKNSIDFVPENGGKIIL
                     RVENSLIHRTGDPNSYVLFAVEDNGIGIPADKIENLFKKFYQVDTTFSRKHGGTGLGL
                     AICKGIIEAHGGEIWIDEENQKGATFKFTIPKTDHDI"
     gene            1272..1778
                     /locus_tag="VFI64_04250"
     CDS             1272..1778
                     /locus_tag="VFI64_04250"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HET7242534.1"
                     /translation="MRILIAEDNEETLQAYKDALEAREHTVTLSFDGQDCLTKYTGET
                     NPAGLNESTSFDVVILDYKMPRMDGLEAAKKILQINPQQRIIFASGFVDETVEQSVRR
                     LRRIIEVMRKPFSLNALVDTVEDAQVYEGLKTLMINLRYLKDGYPNEEQMKEIFDGLR
                     KIQKNRTY"
BASE COUNT         1028 a          511 c          616 g          953 t
ORIGIN      
        1 aggcaatcga aacgatgaaa aaaagcgttg aaaagattga agtcctggtt agtgacatgt
       61 tagatatcca taaactcgaa attgaaagat tgaggttgtc gaaaactaac atagatgtgc
      121 gcgaaataat agatcaagcg atgtctgaga tgttacctct agcgaaaacc aagaatgtga
      181 atttagtatc agaaatatcc gtaactggga ctgtattttg tgatccaaag aggatcggac
      241 aagtaatttg taatctgata aaaaattcta ttgattttgt tcctgagaac ggaggcaaga
      301 taatactccg ggttgaaaat agtctaatac atcgcaccgg agaccctaat tcctacgtct
      361 tgttcgcagt agaagataac ggaattggta ttcctgccga taagatagaa aatcttttta
      421 aaaaatttta tcaagtggat actactttta gcagaaagca tggtggtaca ggattgggac
      481 ttgctatttg caaaggcata attgaggctc atggaggtga aatttggata gacgaagaaa
      541 atcaaaaagg agcaacgttc aaatttacaa tccctaaaac agatcacgac atatgaaagt
      601 taacttggtc gaatacaatc gtgagatgac taggttatgt ctttctattt gcaaagtaga
      661 agcaatttag aaaattggat tgttaacaat tgtaacgagg cgtcgaactt taatttaaaa
      721 taagggggtc cgatctcata tagctcgcat ctggtaacgc ggaaattcgg cggtcccgat
      781 atttaatgga gttagatgag tatgaattgt taagatcaaa aatactatga tattcggctt
      841 ttctattact gcagagcggc aaaaaattag tttcacccga tataatgggt ttattgatgg
      901 aaccatcatc tttagatgat tcgaaccaac aggtaaacag atttcaaaat tattttggag
      961 ctgtctagaa aaaattacat ttagcccact gatctaaatt acagtaccag agtatatgtc
     1021 gccatgaagg ctacagacaa tgctccatgt attgaggctg tgcaatgaat cgacgaccga
     1081 ttacctggag cattcatttt acaatttagc tggcaagtgg actttattac tttggtccat
     1141 accgaacaac tccatttttt ggatgcccat tcaagttaat acgcttcaca ttttacgtgc
     1201 ataacggatg cgttagcact tctgcaaaat tattaagtat tagtatgtac aattagattc
     1261 accagtatta tatgaggata cttatagcag aagacaatga ggagacctta caggcatata
     1321 aggatgcttt ggaggctaga gaacacacgg ttacgttgag ttttgatggc caagattgcc
     1381 taacaaagta tactggggaa actaatcccg caggattaaa tgaatctact tcatttgacg
     1441 tagtaatttt ggattataag atgccaagaa tggacggttt ggaagctgct aaaaaaattc
     1501 tccaaataaa tccacagcag cgcattatct ttgcgtcggg gtttgtagat gaaacagtag
     1561 agcaatctgt taggaggctt agaaggataa tcgaggtgat gcgcaagccc tttagtttga
     1621 atgctcttgt agatacggta gaagacgcac aagtatacga aggtctaaag acccttatga
     1681 taaacttaag gtatttaaag gatggatatc caaacgagga acagatgaag gagatatttg
     1741 atggcttaag aaaaatacaa aaaaatcgaa cttactgata tttacaactt ttcccttggt
     1801 tgacaattgt tctaacaatt cactgtttgc ataaaatttt ctttcaagtt gtttctagtt
     1861 acgatttaac ttttctattc acgcttcaga aagtcggaat tcttaatagt gattgtcatt
     1921 agatctagtg gcatatttgt tagtgccaaa atcactgatt tcacaataga attgagtttt
     1981 agtctcaatc agaaaatatc tacaatcctg gtacaaatag tggcttggct gatcagaaaa
     2041 taaagaagtt tgctagttat tggtccacta acgttcacgg acctaataaa catgaccgtc
     2101 caggagtttg gtccaagttt cataacttga aaatatcata tatgttacat aacgcatggc
     2161 tttccagaag ataagtaaga agtatgcgaa aaatccctat gtttctggaa ttgctgagaa
     2221 cttatcgcaa tacaacttga tctagaaatt ctagtaataa atacagtact aatggaattt
     2281 gtgtatggct tattctagtt gactcctagt cttgtgtata caaagcatcc ccaaattatt
     2341 gcttcctgac gagcatggcg acagtatgga taaagaacag aaaatgtcat ttttagtata
     2401 agggtattca cattacgaca gcagctctag aggaaatctt gtcagttacc gggaacaggt
     2461 gacataaaga tttccgtaga aatcgtaatg tgaatccctt agtatacgat tgttatatgg
     2521 tataaataga ttagtaaggc tagtagatca ctgcgccggc aatggattta gaagggcgtc
     2581 gaacttatta ctaccagaag catttatcca gccaggagta gatttttctg agacggctga
     2641 tctctcgtta aattgcattt ttttgattca ggttgtttta ttgcaaccta tttactgttg
     2701 gatactatcc aagacttgtt ggtgccagca aatattgatt atcattactt cacatttcat
     2761 aacatgatta cctttgagca tcataaaaaa agtcgcttaa cttcttgtca taaaatattc
     2821 aaaataaaga tgcgatcatc cctaacttcc atattgtaga atgatgttac tagattatgg
     2881 ttacatcatt attttgtaca ttgtaggttt tcttaatacc tcgctttggc aaagtcgttc
     2941 aagttttcac gcttgaaaaa ttgtaagcat cttgtgacat tctttacagg aaattatgat
     3001 tcccctaata gttttgtggc caatatccac ttcttccaca ttccaaccgg tactaaagat
     3061 atcactgtta caataaggac aattagccat gtaggttaga gaatctgc
//
LOCUS       DASSIK010000227         2186 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1434710, whole genome shotgun sequence.
ACCESSION   DASSIK010000227 DASSIK010000000
VERSION     DASSIK010000227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2186)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2186)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2186
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1434710"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            112..1476
                     /locus_tag="VFI64_04255"
     CDS             112..1476
                     /locus_tag="VFI64_04255"
                     /inference="COORDINATES: protein motif:HMM:NF012296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HET7242535.1"
                     /translation="MRSNIEYPPGPSNLIPYTMGHKFIRDPIKTLLDLSHKYGDISHF
                     KFGRQDVYFINNPNYIEDILVTNYKNFIKSRGLQVSKRLLGNGLVTSEGESHERQRHL
                     IQPTFYPKQIRSYSDDMIKCAIKMCDNWKDGTVVDIHKEMAHVTLAIISKSVLGYEVK
                     QQGDEIGKSLLTCMEYFNRLLMPFGELIEKISILPMNKEFQRAKDTLDSTVYSMISEH
                     RKNLDRGKNEGDDLLFTLLQAQDEESGIGKMSDIQLRDEVMTIFLAGHETTSNALTWT
                     LYLLSLHPDIEAKLDHELHTVLGDSRIIPTIYDVPKLEYTERILTESMRLYPPAWALG
                     RQAINEHKIDKYTIRPGSIILMSQYVMHRNPLYFTEPDLFYPDRWTPEFKKQLPRFSY
                     FPFGGGIRGCIGEPFAWLEAILLISTICKQWKMALEPGHKVALKPLITLRPKHGMRML
                     LTRK"
     gene            1515..2039
                     /locus_tag="VFI64_04260"
     CDS             1515..2039
                     /locus_tag="VFI64_04260"
                     /inference="COORDINATES: protein motif:HMM:NF024304.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HET7242536.1"
                     /translation="MAYYTGHIDAEHQLLTYQAYCKLLNIVSILKLIRPAKVAHLATA
                     DSSLQPYITPVVFVIDKDKIFIPLDYKPKTVPIKQLKRVKNIQKNPKVALQVDNYEDD
                     WQRLWFILLMGYAELVEQKEVGGDQDKNIRKVHDLFIEKYVQYSKVEIGTIFIKISSL
                     RGFYWHYNTSKQEN"
BASE COUNT          739 a          378 c          437 g          632 t
ORIGIN      
        1 tctgaactag agaactagaa caagaaaagt tgttcggtct acttttgtat agtatcgcta
       61 acaggcggta cgaatgtaaa acaatattaa tcttgaaaga gtcgaatgtg catgagaagt
      121 aatatcgaat atccacctgg accttccaat ttaatccctt atacaatggg ccataagttc
      181 atacgagatc cgatcaagac attgcttgat ctatctcata agtatggtga tatcagtcat
      241 tttaaatttg ggaggcaaga tgtttatttc ataaataatc caaattacat tgaagatatc
      301 ttagttacca actataagaa tttcattaaa agtagaggat tgcaagtttc aaagcgtctc
      361 cttggcaatg gcctagttac tagtgaagga gagtctcatg aacggcagcg gcatttgata
      421 caacctacat tttatccaaa acaaataaga tcttattcgg atgacatgat aaagtgcgct
      481 attaaaatgt gcgataattg gaaggacggt accgtggttg acattcataa agaaatggca
      541 catgttacat tggcaataat tagcaagagt gtactaggtt atgaagtcaa acaacaaggt
      601 gatgagatag gcaaatctct cctaacttgc atggaatatt tcaaccgcct tttaatgcca
      661 tttggtgaat taattgaaaa gatctccata ttaccaatga acaaggaatt tcagagagct
      721 aaagacacat tagattctac ggtgtatagt atgattagcg aacatagaaa gaatttggac
      781 agaggaaaga atgaaggaga tgatctcctg ttcacacttc ttcaggctca ggacgaagaa
      841 tctggaattg gaaaaatgag tgacatacag ttgagggacg aggtcatgac aatatttttg
      901 gcaggtcacg aaacgacttc aaatgcactt acgtggacac tttatctatt gtccttgcat
      961 ccagatatcg aagctaaact tgatcatgaa cttcacacgg tactaggaga cagcaggata
     1021 attcctacta tatatgatgt cccaaagttg gagtatacgg agagaattct tactgaatcg
     1081 atgcgactat atcctccagc ttgggctttg ggccgccagg ccataaatga gcacaaaatt
     1141 gataaatata caattagacc cggctcgata attttgatga gtcaatatgt tatgcacaga
     1201 aatcctcttt acttcacaga acctgatctt ttttatccag accgttggac tccagagttc
     1261 aaaaaacagt taccaagatt cagttacttt ccttttggag gtggcatcag aggttgtata
     1321 ggtgagccat ttgcctggtt ggaagcgatc ctcttaattt ccactatttg taaacagtgg
     1381 aagatggcct tagaacctgg tcataaagtg gcgttgaaac cattgattac tttgcgtccc
     1441 aagcatggca tgcgtatgtt attgactcga aaataaggat taacaaccca atcgctgtca
     1501 gtagagccgc atttgtggcg tattatacag gacatattga cgcagaacat cagttattaa
     1561 cttaccaggc ctattgcaag ttattgaata ttgtgagcat tttaaaacta ataagacctg
     1621 caaaggttgc tcatctagcc actgctgatt ctagccttca accctatatt acaccagttg
     1681 tgtttgtgat agacaaggac aaaatcttta ttcccttaga ctataagcct aagaccgttc
     1741 ctattaaaca gctgaaaagg gtaaaaaata tacagaaaaa ccccaaagtt gctttgcaag
     1801 tagacaacta cgaagatgat tggcaaaggt tgtggttcat tttgttaatg gggtacgcag
     1861 aattggtcga acaaaaagaa gtgggcggag atcaagataa aaatattcgt aaagtacacg
     1921 atctatttat agaaaaatat gttcagtact ctaaagtaga aattggaaca attttcataa
     1981 agataagttc gctaaggggt ttctattggc attacaatac atcaaaacaa gaaaactagt
     2041 aggatgatcg aaaattgaat tttgcactat ttagcgaatt gaagcagctg ttttgagatt
     2101 tcaatagatt gatctatatt tccataaagt ggagtgaaaa agttactaaa tacaacatgc
     2161 tctatgccaa tatcttttat ctctct
//
LOCUS       DASSIK010000228         2172 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_341208, whole genome shotgun sequence.
ACCESSION   DASSIK010000228 DASSIK010000000
VERSION     DASSIK010000228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2172)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2172)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2172
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_341208"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            278..445
                     /locus_tag="VFI64_04265"
     CDS             278..445
                     /locus_tag="VFI64_04265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242537.1"
                     /translation="MKKRRVLAKANILDGIVEKNSECQNSDYPMICLVRSYGGRAASS
                     FCNAIIRELSI"
     gene            609..908
                     /locus_tag="VFI64_04270"
     CDS             609..908
                     /locus_tag="VFI64_04270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242538.1"
                     /translation="MIKLTQLEIDECLNWILHTIVSENSPSHNHIVVEDQGLEFIVIS
                     AKDYYLDVQGLLKIEKITGMTLVQVRSSNGVSDLWFGRKIQTAAVSRRSVSKSNK"
     gene            complement(1074..1460)
                     /locus_tag="VFI64_04275"
     CDS             complement(1074..1460)
                     /locus_tag="VFI64_04275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242539.1"
                     /translation="MLKRQYVYYAAIAVIAITLLIYFVNQERSKVPYALGVDAIKDTT
                     DMAGTYYRIRVTNIGTNMVTNISVYLGQNDIQHLKSLSPDQSWFFYPRPDTEISKINV
                     KADNGINITTDYRSPLKGIGLPGSGR"
     gene            1844..>2172
                     /locus_tag="VFI64_04280"
     CDS             1844..>2172
                     /locus_tag="VFI64_04280"
                     /inference="COORDINATES: protein motif:HMM:NF014829.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242540.1"
                     /translation="MIKLDKIIGNIKIDHNLKSLHEELIKLGKTETVTFGRVESERTR
                     IRKMSNKGTDLVLILSEGSRIRDGDVLFLTQDKMIVIQIVPEPVAIIQIHKILIRDQM
                     IRTSVTIG"
BASE COUNT          745 a          348 c          398 g          681 t
ORIGIN      
        1 gcgcgtttga aacaactaaa gcactagcgc caagaataac ggaaagaata gatataatga
       61 cgactctact gacaatagtt tttatcatgg gacattaggt ttctttactg aattaatatg
      121 ttttgtgtaa aattgacata agtaaataat ttagtacagt taattcaatt taattattat
      181 agaaaatgag tcgttttcaa ccagtatcta atatttaatt ggaaaacatg ttgacgcagt
      241 tagcgcaccc tcaatatggt ctcgtgttga cggtatcatg aaaaaaaggc gggtcttagc
      301 caaggcgaat attttggacg gaatagtcga aaagaactct gaatgtcaaa atagcgacta
      361 tcccatgata tgcctagtac gaagttatgg tggtagagcg gcgagctcat tttgtaatgc
      421 gatcatacgg gaattgagca tatgaaagac ctttttgatt atatgcatta ttttcgttat
      481 atcaaatatt ctcaaatgtt tactgaattc atgataagct tcttgatcca ccagtgataa
      541 gttattatcg tttcttatga ctaatacaat caaatttctt aaaaaacggt tatccgactg
      601 tcatatgagt gattaaatta acacaattag aaatagacga gtgtctaaat tggattttac
      661 atacaattgt gtcagaaaat tctccaagtc ataaccacat tgttgtggaa gatcagggat
      721 tagaattcat agtaattagt gcaaaagatt attacttaga tgtccaggga ttgcttaaga
      781 tcgagaaaat cactggaatg acactagtcc aggtaagatc ttctaacgga gtgtccgatt
      841 tgtggtttgg ccgaaaaatc caaacggccg ctgtatccag gagatctgtc agtaaatcta
      901 ataaataatt tgtttgttat tgatgcacca tttttttaca tgctgaattc ataatgcttt
      961 tgctcgacta tagttgttat ggattttcga acataaatag tgcattaata taagctataa
     1021 cagaaacgac attattgtcc ttgctctatt aattttagtc tttgtaatag acattacctt
     1081 ccactaccag gaagacctat tccctttaaa ggcgaacgat aatctgtagt tatattgatt
     1141 ccgttatcag ccttaacatt gattttcgat atttccgtgt ccggacgtgg ataaaagaac
     1201 caggattgat ctggtgatag actcttaaga tgctggatat cattttgacc caagtataca
     1261 gaaatatttg taaccatgtt tgttccaata ttggtaactc gtattcgata gtaggtacct
     1321 gccatatctg tagtatcttt aattgcatct acacccaaag cgtaaggaac tttacttctc
     1381 tcttggttta caaagtaaat aagtaaggta atagcaataa ctgcaattgc ggcatagtaa
     1441 acgtattgtc ttttcaacat aatctatcaa ctaaattacg actaaaataa gtgtgatctt
     1501 aacgtttgta cgaacctatc ttccaaattt agttagacag ggtagtaaat tactagcgag
     1561 atcataaaga caacaagtag atctggtgca gaccttacca gatcagaacc taattctaat
     1621 ggccaagctt tctgtatgac taaaatattc catgcttcta aaggactggg gggtcagtgc
     1681 aaatcgtgac attgtcattt gttttcaatc caacttatct gacttcggca tgactctgca
     1741 tagtttaaag gcttcagtaa tgatggcaag tatacttgga ataacaaagg aaattaaaaa
     1801 cataaatttc atcaattgaa acctaaaatg atgcaaaatc agaatgatta agcttgataa
     1861 aataattggc aacatcaaga tagatcataa tctcaaatcg ctgcatgaag agttgattaa
     1921 attgggaaaa acagaaactg ttacttttgg acgtgttgaa tctgagcgta cgagaataag
     1981 aaaaatgtct aacaaaggaa cagacctagt attaatatta agtgaaggat cacgtattag
     2041 ggatggagat gttctattcc tcacacagga taaaatgata gtcattcaaa tagtaccaga
     2101 accagtagca ataatacaga ttcataagat tttgattcga gaccaaatga tcaggacatc
     2161 tgtcacaatt gg
//
LOCUS       DASSIK010000229         2471 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_938634, whole genome shotgun sequence.
ACCESSION   DASSIK010000229 DASSIK010000000
VERSION     DASSIK010000229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2471)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2471)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2471
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_938634"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(127..828)
                     /locus_tag="VFI64_04285"
     CDS             complement(127..828)
                     /locus_tag="VFI64_04285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HET7242541.1"
                     /translation="MSDNQSQIALEVNDITKVFATSAGIFEALRGISFVINRGEFVSI
                     VGPSGSGKSTLLNMIGALDRPTSGKVYIDGIDIFSLRDGEIASMRNKLIGFIFQSFNL
                     INRSTVQKNVELPAIISDMSKQERNRRAFLLLETLGVADKAKLKTSSLSGGQQQRVAI
                     ARALINNPTMILADEPTGNLDTATGNEVFALLKNLSSKFRRTIIMVTHNQELADKTDK
                     IIYIKDGSIEREVLN"
     gene            complement(825..998)
                     /locus_tag="VFI64_04290"
     CDS             complement(825..998)
                     /locus_tag="VFI64_04290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242542.1"
                     /translation="MNRLARKNAIVELGKKTTRMNYRESCHVYCFSVLNVDHEDPNGV
                     ITSKRRRSGTIEE"
     gene            complement(1004..2266)
                     /locus_tag="VFI64_04295"
     CDS             complement(1004..2266)
                     /locus_tag="VFI64_04295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HET7242543.1"
                     /translation="MKITEIFKLSFEAIRERKARAALTIIMVLVGCSLMIALNGISAG
                     QKEFIKKQLNTLAPNILFVNNGQRSFRGGGDSSTPSIIINSIVVDRIKSLPFVSDVIP
                     AYQGQATLDASGNIITSSVMGTDPQKFIYSISPGVELVPGSSVQSNNPSSIIFGDTTA
                     NPPGKSTPFVTLGQTVRATFTYVDPNTGKQQDISKSFVVTGIMAPTGNNQLDRAVIIN
                     AAAGDSLFLKTGKYDQMVVVAISADYVPTVQTEITSLYGTNIGITTPKAILQARERFT
                     GGNDSFIQSVAFIALLVGAIGIVTTLYNAVNERISEIGTIKAIGAARIFILLMFLFEA
                     LMIGLIGSTLGVVSGVFGAYAISSGGGGPRPGFGGGGGGAQPQITPIFVPGDIANVWL
                     LSVVLSVIAGLYPAWKASGLSPVLALKR"
BASE COUNT          643 a          601 c          455 g          772 t
ORIGIN      
        1 ttctcgtcct cgtcagtccc gattatacat gcactggata gaggattact aacggaattt
       61 tttcacacaa ctatgttcgg tatggccact tgtctcatct gaacatgtcc ttattgttgc
      121 agtccttcaa ttaaggacct ctctttcaat agatccatcc tttatataaa taatcttgtc
      181 agttttatct gctagttcct gattatgagt aaccatgatg atggtgcgtc tgaatttgct
      241 tgaaagattt ttgagcaaag caaatacttc gtttcccgtg gcggtatcta aatttccagt
      301 tggttcatca gccaagatca tagttggatt gtttattagt gcacgagcta ttgccaccct
      361 ttgctgttgt cccccgctaa ggctagatgt tttgagcttt gccttgtcag ccactcccaa
      421 tgtctccagc aacaaaaacg cccgacgatt tctttcttgt ttactcatgt cactaattat
      481 cgcagggagc tcgacattct tctgtactgt agacctattg atcaagttaa atgattgaaa
      541 gataaatcct atcaatttgt ttctcattga cgctatctcg ccatctctca aagagaaaat
      601 gtcaattcca tcgatgtaga cttttccgga ggtaggtctg tccaatgcgc caatcatgtt
      661 aagcaaggtg gacttgccgc ttcctgaggg tcccactatg gaaacaaact ctcccctatt
      721 tatgacaaaa ctgatgcctc ttaaggcctc gaatattcct gcacttgttg caaaaacctt
      781 ggttatgtcg ttgacctcta gtgcaatttg actttgatta tcgctcattc ctcgatcgtt
      841 ccactcctcc ttctcttgct agtgatgacc ccattagggt cttcgtgatc cacatttaat
      901 acgctaaagc aatacacatg gcagctctct ctataattca tcctagttgt cttcttgccc
      961 aactcaacta ttgcattctt ccttgccaat cgattcacca ggatcatctc ttcaacgcaa
     1021 gtactggtga aagtcctgag gctttccacg ctggatataa tcctgcaata acactcagaa
     1081 caactgagag cagccagaca tttgcaatgt caccgggaac gaatattggc gtgatttgag
     1141 gttgggctcc tcctccaccg ccaccaaacc cgggccttgg acctcctcca cctgagctta
     1201 ttgcatatgc cccaaataca ccagatacta ctcctagcgt cgaaccaatc agacctatca
     1261 taagagcctc aaacagaaac ataagaagta taaaaatcct tgctgcgcct attgctttaa
     1321 tcgtccctat ttcggatatt cgttcattga ctgcattata cagtgttgtt acaatgccta
     1381 ttgcacctac aagcagagca ataaatgcta cactttggat gaacgaatca tttccaccag
     1441 taaatcgttc tcgcgcttgc aaaattgctt tcggagtagt gattcctata ttagtaccat
     1501 agaggcttgt tatttcagtt tgtacggtgg gaacataatc ggcggagatg gccaccacaa
     1561 ccatctgatc gtatttgcca gtcttaagga aaagggaatc cccagcggcc gcattgatta
     1621 tgactgccct gtccaactga ttatttccag tgggagccat aatcccagtt accacaaaac
     1681 ttttagagat atcctgttgc tttccggtat ttggatcaac ataggtgaat gtcgctctga
     1741 ctgtctgccc aagggtaaca aatggcgtac tttttcctgg agggttcgcg gtagtgtcac
     1801 caaatatgat agaagacgga ttatttgatt ggactgaaga acccggtaca agctcaactc
     1861 cggggcttat agaatagata aacttctgtg gatcggtacc catcacggaa gatgtaatta
     1921 tatttcctga tgcatcaagc gtggcctgac cttgatatgc aggaatgaca tctgagacaa
     1981 aaggaagtga cttaattctg tcaacaacaa ttgagtttat gataatactc ggggtggatg
     2041 aatcaccgcc gcctctaaac gaccgctgac cgttattaac aaaaaggata ttaggtgcta
     2101 gtgtattcag ctgtttttta ataaattcct tctgacctgc acttattcca ttgagcgcaa
     2161 tcatcaaact gcacccgacc aaaaccatta ttatagtaag cgcagctctg gcctttctct
     2221 ctcttattgc ctcaaatgac aatttgaaaa tttcagtgat cttcatgttc tgcacacctc
     2281 gctaaccata aatgattcat tcatttcttt tctcccgaat catcttcttc cttgttcatc
     2341 ttgtctaatc ctcgtcttct ctcagtcccc gagcccttgg atccctcatt ttcctgacta
     2401 gtatctgtaa atatactgcc ttggtcctta tttccttttc catctagaaa gaactggtct
     2461 tcttttgatg a
//
LOCUS       DASSIK010000230         5011 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1230369, whole genome shotgun sequence.
ACCESSION   DASSIK010000230 DASSIK010000000
VERSION     DASSIK010000230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5011)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5011)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5011
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1230369"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            269..342
                     /locus_tag="VFI64_04300"
     tRNA            269..342
                     /locus_tag="VFI64_04300"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:303..305,aa:Thr,seq:cgt)
     gene            378..1118
                     /locus_tag="VFI64_04305"
     CDS             378..1118
                     /locus_tag="VFI64_04305"
                     /inference="COORDINATES: protein motif:HMM:NF014752.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ERCC4 domain-containing protein"
                     /protein_id="HET7242544.1"
                     /translation="MTNFVISYVFVRIVVDRREKSSSIPELLMKAGITVDFATLKVGD
                     YVISSNTAVERKTVHDLLKSIYDGRLFIQCSQLIKYFPSPLIIIEGNIKDLELLYESK
                     NLPYSDKTRSIYESISAIILDFRIPLINTPSGTHTTNLLVAMAYKSLQERSDDGPLLR
                     KIKKNKQEYLQQLSVLSSLPGVGSKLGARMLEEFNTPKRALNASVAELAKIPGFGRIR
                     AQKVREILDKKSRKSDGEGQPTLLEHMK"
     gene            complement(1178..1867)
                     /gene="psmB"
                     /locus_tag="VFI64_04310"
     CDS             complement(1178..1867)
                     /gene="psmB"
                     /locus_tag="VFI64_04310"
                     /EC_number="3.4.25.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000502 - proteasome complex [Evidence
                     IEA];
                     GO_function: GO:0004175 - endopeptidase activity [Evidence
                     IEA];
                     GO_process: GO:0010498 - proteasomal protein catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaeal proteasome endopeptidase complex
                     subunit beta"
                     /protein_id="HET7242545.1"
                     /translation="MFLDSTNMLPSDHNNNKYDEFIRDNIKKGTTTCALTCKDGVVLA
                     ADTRASAGFFIADRHVMKIQKVDKHIGMTIAGGVADAQNLVDLLRYNANIYRLSNKEP
                     IPVKSAARLTSNVLFNQRYYPYYVQLILAGYTANEGAQIYNIDLFGSMTTEKFISTGS
                     GSPVAYGYLETEYKEDLGVNEAYKIAINAIAAAIRRNSGTGDDINAVIIDKDGYRDLS
                     KEMKEAVGAVY"
     gene            1933..3393
                     /gene="leuC"
                     /locus_tag="VFI64_04315"
     CDS             1933..3393
                     /gene="leuC"
                     /locus_tag="VFI64_04315"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HET7242546.1"
                     /translation="MDYISPSMQRTLFDKIWDEHIVVNGNQIEKDSNGLGQSLIYIDR
                     HLVHEVTSPQAFESLHQRGRKVRRPDSTIATVDHNVPTNDRSLPMVDQTSKIQIETLT
                     RNCREFGITIFDIDSPYQGIVHVIGPELGFTLPGTTIVCGDSHTSTHGAFGAFAFGIG
                     TTEVEHVLATQCLWMSKPKSFLVNIEGTRRNPHAITSKDIILSIIQKIGIDGGTGTVL
                     EYKGKLISELSMEQRMTICNMSIEAGARAGLIAPDETTFEYLRGRKYAPKGEYYEELV
                     EYWRNNLKSDPNSVFHKIETLNADQLAPQVSWGTNPSMVSDVTGNIPHPDEFAKGNEN
                     ERKLAIRALQYMDLQAGTPVTDIKIDRVFIGSCTNSRLEDLIEASLVVKGRKVSAQVR
                     AMIVPGSQQVKIQAEKLGLNKIFKEAGFEWRESGCSMCLGMNPDILAPGERCASTSNR
                     NFEGRQGSGGRTHLVSPIMAAAAAIQGHFVDVREWV"
     gene            3435..4013
                     /gene="leuD"
                     /locus_tag="VFI64_04320"
     CDS             3435..4013
                     /gene="leuD"
                     /locus_tag="VFI64_04320"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HET7242547.1"
                     /translation="MDSFKTIKSKITPLDIINVDTDQIIPKQFLKLVQKTGYGNFLFY
                     DWRFDQKNKLRNDFILNDPKYAERSILLTRENFGCGSSREHAVWALFDYGFRVIIAPS
                     FADIFFNNCFKTGLLPIVLESAEIDYFFSLDSDIYVEVNLMEQTLSTDKKIINFKIDP
                     MKRRMLLEGTDEIDYTLQLEDKITNYEKRYHR"
     gene            complement(4126..4419)
                     /locus_tag="VFI64_04325"
     CDS             complement(4126..4419)
                     /locus_tag="VFI64_04325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HET7242548.1"
                     /translation="MPIAILPDVDEQRCIGCALCVEICTALGPDVLRVKPVEGWKRGK
                     AFVFYPERCISDGACLGVCPTHAIFWMRPMEYTSGQPVALHKNGVFDKGWEEG"
     gene            complement(4530..4754)
                     /locus_tag="VFI64_04330"
     CDS             complement(4530..4754)
                     /locus_tag="VFI64_04330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242549.1"
                     /translation="MARSFEEWWTSVPLDLKTKARKGDEANKPLLNQVNYVLLHLHLA
                     GKHDAKPSHEELKDWLHSGQVDVLRMAPKK"
BASE COUNT         1603 a          865 c          979 g         1564 t
ORIGIN      
        1 atatttagtc tttgactacg ggagaaccat tttgcaattt attagcagtg gataagaatt
       61 gaatatcttt cactatattt taagaatgat atttgctatt ggtattggtt tagcttccca
      121 tccaaattca agtatagata gtttctaatg acaatttatt ggatagaata accaaaaggg
      181 gatttcggtc tgttgaagga aatgaataat aataaaatct atattaaatg ttgcaaacgt
      241 gatttagagt gactcgactc gacattttgc ctcagtagct cagcctggca gagcgaaggt
      301 ttcgtaaacc ttaggccgtg ggtccaaatc ccacctgagg cttaacaact ctatctagct
      361 agcaattaag gtatttaatg actaattttg tcatatcata tgtgttcgtt agaattgtgg
      421 tggatagaag agagaagtcc agttctattc ccgaacttct gatgaaagct ggaataactg
      481 tggattttgc gacgctcaaa gttggcgatt atgtaatatc gtccaataca gcagtagaaa
      541 gaaaaacagt ccatgacctt ctaaaatcga tttatgatgg aagattattt attcaatgtt
      601 cacagcttat aaaatatttt ccatctccac taatcataat tgaaggaaat ataaaggatc
      661 tcgaattatt atacgaatca aaaaatttac cgtattctga taagactaga tcgatttatg
      721 aatcaattag cgcgataatt ttggatttca gaatcccttt aattaataca ccttcaggaa
      781 cacatacaac aaatcttctt gttgcaatgg catacaaatc cttgcaggaa cgttctgatg
      841 atgggcctct gctccgaaaa ataaagaaga acaaacagga atatttacag caactgtctg
      901 ttctttcttc attacctggt gttggaagta aacttggagc tagaatgctt gaggaattta
      961 atacaccaaa aagagcattg aatgcttcag ttgcggaact agctaaaatc ccaggctttg
     1021 gtcgtatacg ggcacaaaag gttagagaaa ttctcgacaa gaaatctagg aagagtgatg
     1081 gggaaggtca gccaacatta ttagaacata tgaaataata ataaataatt gatagaacct
     1141 aaatttctac ttccatttat tatccaattt tatttagcta ataaacagct ccgacggctt
     1201 ccttcatctc ttttgataga tctctatagc catctttgtc tataataact gcatttatgt
     1261 catctccggt acctgaattt cttcgtatag ccgctgctat agcatttatt gcaatcttgt
     1321 aagcctcatt tacaccaaga tcttccttgt attcagtttc tagataaccg taagctacag
     1381 gagaaccact gcccgttgag atgaactttt cagttgtcat ggatccaaat aggtcgatat
     1441 tataaatctg tgcgccctcg ttggctgtat atcccgcaag aattagctgt acataatatg
     1501 gataatatcg ttgattaaat aacacattcg aggtgagtct tgcggcagat tttactggaa
     1561 ttggctcttt atttgataat ctatatatat ttgcattgta tcttagcaaa tcaactagat
     1621 tttgtgcgtc ggccacgccg cctgcaattg tcattcctat atgtttgtct accttctgaa
     1681 ttttcattac atgccgatct gctataaaaa aacctgcact agcccttgta tctgcagcta
     1741 aaactacgcc gtctttacat gtcaatgcac aagtagtagt gcccttctta atattatcgc
     1801 gaataaattc atcgtatttg ttattgttat ggtcagatgg aagcatattt gtactatcca
     1861 gaaacaatac taaatttaag tatttttggt agattacgct tattcatgga atatagatat
     1921 atttagagtc gaatggatta catatcacct tcgatgcaaa ggacactatt tgataagatc
     1981 tgggatgaac atatagtagt taatggcaat cagatcgaga aagatagtaa tggattggga
     2041 caatccttaa tttatataga tagacattta gtacatgaag ttacttcccc tcaagcattt
     2101 gaaagtttac accaaagagg caggaaggtt agacgaccag actcgacaat tgccaccgtg
     2161 gatcataatg tacctactaa tgatagatca cttcctatgg tcgaccagac atcaaagatt
     2221 caaattgaaa ctttgacgag gaattgtaga gaatttggca ttacgatatt tgatattgat
     2281 agcccgtacc agggcatagt tcatgtaatt ggtcctgaat tgggttttac gcttcctgga
     2341 actacaatag tttgcggtga tagtcatacc tcaactcatg gagcttttgg agcttttgcc
     2401 tttggaatag gtacaactga agttgaacat gttttggcta cacagtgttt atggatgtcc
     2461 aaaccaaaat catttttggt aaatattgag gggactagaa gaaatccaca tgctattaca
     2521 tctaaggaca ttatactttc cataatacaa aaaattggaa tcgacggggg aactggaacg
     2581 gtattagagt ataaaggaaa actaatctcc gaattgtcta tggagcaaag aatgacaatc
     2641 tgtaacatgt ctattgaggc tggcgctaga gctggattaa ttgctcctga tgaaacaaca
     2701 tttgagtact taaggggacg gaagtacgct cctaaaggag aatattacga agaattggtg
     2761 gagtattgga gaaataatct gaaaagtgat ccaaattcag tatttcataa aattgaaact
     2821 ttgaatgcag atcaacttgc tccgcaggtt agctggggaa ctaatccttc gatggtttcc
     2881 gatgtgacgg gtaatattcc tcatccagat gaatttgcga aaggcaatga gaacgaaaga
     2941 aagttggcaa tacgtgcact acagtatatg gatttacaag ctggcacgcc tgtaacagat
     3001 atcaaaatcg atcgcgtttt tataggttcg tgtaccaatt caagattgga agaccttata
     3061 gaagcttcgt tggttgtcaa gggaagaaag gtttctgctc aagtaagagc catgatagtt
     3121 ccgggatctc aacaggtaaa aatacaagcc gaaaaattag gtttgaacaa gatcttcaaa
     3181 gaggcaggct ttgaatggag agaatctgga tgtagcatgt gtttgggtat gaatcctgac
     3241 atattggctc ctggagagcg ttgtgcgagt acatcgaaca gaaattttga gggaaggcaa
     3301 ggcagtggtg gaagaacaca tcttgttagt cctatcatgg ccgccgcagc tgcaattcaa
     3361 ggacattttg ttgatgtaag agaatgggtg tgactagtga ttagtcatta gagaaattag
     3421 ttgattgatt taatatggat tcatttaaga ctattaaaag taaaataacg cctttagaca
     3481 taatcaatgt agatactgat caaataatac cgaaacaatt tctcaaatta gttcaaaaga
     3541 ctggctatgg taactttctt ttttatgatt ggcgttttga tcagaagaac aaattgagaa
     3601 atgatttcat attgaacgat ccaaaatacg cagaaaggtc aattttgctt actagagaaa
     3661 actttggatg cggtagctct cgtgaacatg ccgtatgggc attatttgat tatggttttc
     3721 gagtcataat agctccctct tttgcagaca tcttttttaa taattgcttc aagacgggat
     3781 tgctgcctat tgtacttgaa agcgcggaaa ttgattattt ctttagtctt gattctgata
     3841 tttatgtaga agtgaacttg atggaacaaa cactttcgac tgacaagaag atcataaatt
     3901 tcaaaattga tccgatgaaa agaagaatgt tacttgaagg aacggatgaa attgattata
     3961 cccttcaatt agaggataag attactaatt atgaaaagag atatcacaga taggtagcag
     4021 gatcgttttg taatataaaa gctagattat atctatgtca agtcattgta taatcgtgta
     4081 gagtgagtaa aagtaaaaaa tagtggttat taaaagatgt tttgtttaac cttcttccca
     4141 gcccttgtcg aagacaccgt tcttgtgcag agcaactggt tgtccagagg tatattccat
     4201 tggtctcatc cagaatattg catgtgttgg acatacacca agacatgctc catcggaaat
     4261 acatctctct ggatagaaga caaatgcttt gcctctcttc catccttcaa ctggttttac
     4321 tcttaataca tctggcccga gagcggtgca aatttctaca cacagtgcac agccaataca
     4381 cctttgttca tcaacatctg gtagtatagc aattggcatt cattaattca ctacaggtgc
     4441 atatgtttga aactatttaa acactatgcc ttgttcaaaa cagtgttata acatacggta
     4501 aaaagaaaag aaaaataaat aatggttttt tacttcttag gtgccattct taatacgtct
     4561 acttgaccgc tatgcagcca atcctttagc tcttcatgac taggctttgc atcatgcttt
     4621 cctgctagat gaagatgcag tagaacgtag ttaacctggt ttaataacgg cttgtttgct
     4681 tcatcacctt tgcgagcttt tgtctttaaa tcaagtggga cagacgtcca ccattcttcg
     4741 aacgaacgtg ccataacaaa cagttaagtt cgaactttat aagccttttg gacatcaggg
     4801 tataactgaa ttaattcgta gtcaacttgg ttacaaaaaa tataatacca ctgaacgcgt
     4861 caaaatgttt ctatacgata acgcatgcca tttgaaattg atgatctcta tcaagcatac
     4921 ttaaaataca atgaatttag gaagactaat ccgccttcct tccatgatcg tttcatattt
     4981 cctttcttgg cgggaagcta ttttgcgtac a
//
LOCUS       DASSIK010000231         9202 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1436168, whole genome shotgun sequence.
ACCESSION   DASSIK010000231 DASSIK010000000
VERSION     DASSIK010000231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 9202)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9202)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9202
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1436168"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(131..1276)
                     /locus_tag="VFI64_04335"
     CDS             complement(131..1276)
                     /locus_tag="VFI64_04335"
                     /inference="COORDINATES: protein motif:HMM:NF014011.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of RNA
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase small subunit domain-containing
                     protein"
                     /protein_id="HET7242550.1"
                     /translation="MSLKTSSENSSFLKGLFREYYFKDSNSLVTPSMIEKREFGYMSF
                     DSIMVRHLSFRNKRELIARLVQESPSDVYCSNGYYKFPTNSVQSKEWEGADLIFDIDL
                     KDLNMPCSSEHSFYVCDQCGACNVSFLNACTVCLGRKISRSTIPCRKCLISLKKETQR
                     LIEFLHGDLGIADGSIEIFFSGNAGYHIHVPDSEFKTLDSRARSDLVDYICGNGIMNE
                     SIGVRKSKNGFYIKFPKSGMVFGWRRRVASEFGINQSSISKLKRIVESSGGYGQFKED
                     LSTKAKLIGVRIDPHVTTDIHRIFRMPGTINGKSSLLKVKSTNLETFNPLDSACVLDD
                     RQVYIRSKVNLKLYLHENYFRIKNSIERLPAYAAAYMICKGLADFIK"
     gene            complement(1273..2313)
                     /locus_tag="VFI64_04340"
     CDS             complement(1273..2313)
                     /locus_tag="VFI64_04340"
                     /inference="COORDINATES: protein motif:HMM:NF016030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242551.1"
                     /translation="MNSIGLAIKLGPADLAKYPFLEEASEYIRETRFAIEELDRPEMD
                     HILRRSVDILETEISAGKVYTNLDKYEIEILSFLVTLIMIKSINLEPVTKKHSLLEAM
                     RTEKFLTEDLFKEKSLQKKKLLLHKIFQELFDIDIHFDLDLTIFRLSVPDYLMRASKM
                     NEQEWKLINRSVHSGYVYIDTDEAVRLIRSELSNLIYDRIKTMKIPLVPERVKICAEE
                     LRKKFSIYYTYRKHHIVSDYPPCIKHAIEMMNTGENLPHSARVMLATYMLTIGKNTDE
                     IVTMFQNSPDYNEKVTRYQIEHLAGNKGSRIKYSVPSCKRLHSEDLCFATVDCENILN
                     PIQFGRKKANTQ"
     gene            2382..3251
                     /locus_tag="VFI64_04345"
     CDS             2382..3251
                     /locus_tag="VFI64_04345"
                     /EC_number="3.1.21.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0016888 - endodeoxyribonuclease activity,
                     producing 5'-phosphomonoesters [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease IV"
                     /protein_id="HET7242552.1"
                     /translation="MNVQIGFHVSIAGGLQNAVDNASKIGCNAFQIFTRNPRGWAEKV
                     LNARDVQMFKLKLRRSGINSDAVAVHMPYLPNLSAPNGELYKKSIDSLISELHRCFQL
                     EIPKLVVHLGSHLGSGPQNGIDQLVNSVNTATDHSKSSGRKNGKVTILLENSAGQKNS
                     IGSKLEDIRSILDKISSKNVGICMDTCHAFAAGYDLRSEKKNDDFVDKFDSIIGLEKL
                     RLIHLNDSEKGLGSHIDRHEHIGLGKIGVKGVSAILKNRKLKGKPIIMETKEDSVRNN
                     LDNLRVALELANS"
     gene            3403..4875
                     /gene="glyS"
                     /locus_tag="VFI64_04350"
     CDS             3403..4875
                     /gene="glyS"
                     /locus_tag="VFI64_04350"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009345 - glycine-tRNA ligase complex
                     [Evidence IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase"
                     /protein_id="HET7242553.1"
                     /translation="MNTYDTIMKLALERGFYFPSCEIYGDAPAGFWDYGPTGVNMKNR
                     FVELWRRELVRRDGMLEIDGSQIMSKSIFIASGHITNFTDPMIICKQCGSTFRADKHI
                     AEITGHELPELASGSEIDNIIVENKLSCPKCGGPFEKSTRFNMMFQIGIGPSNDEAYL
                     RPETCQSIFVDFPRIFKTMRGRLPLAIAQLGKSFRNEIAPRQSLLRLREFYQAEIEVF
                     CNPNRLDEVPKFEEMKKKILRLYINDSYHEITAQEAVHQLIIPNNLVAYYLTLLVLFY
                     EKTGIDMNRTRLRQLSTSEKAFYASFAFDFEVETSIGWLELVACNYRSDYDLRGHSTV
                     SKQNLHVIDPIDNTKVLPNVFELSMGIDRSIYSILEHSFFEDFEHERTVLRLRPYLAP
                     ILAGILPLITKDGLREKAQLIYSQLKLDFPVFYDESGSIGRRYRRLEEIGTPFAVTVD
                     RQTLSDDTVTIRNRDTMLQVRIQISELSNYLHKEAYKLVS"
     gene            5013..5399
                     /locus_tag="VFI64_04355"
     CDS             5013..5399
                     /locus_tag="VFI64_04355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242554.1"
                     /translation="MSSHDPNPLPYGALPYYQVHFIVDSVKVVDPAIFMAKCEPLTRG
                     HLGNKTVIALQWSGGRLADVLISDKTLSEMLMPLMLDEGEIRIDPQDNRVRIYTSWKR
                     EDNLKFSLSFFKAIERIATTIRQLSK"
     gene            5538..6908
                     /locus_tag="VFI64_04360"
     CDS             5538..6908
                     /locus_tag="VFI64_04360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003979 - UDP-glucose 6-dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HET7242555.1"
                     /translation="MVSTSVSVADTDYDLIRQIKDGSLKIAIYGLGHVGSPLAAAWLR
                     AGAHVIGVDNSRKVLRAAMEGRTLIPEPGISEAYAEALKNNRFELFEDPIEASKKSYF
                     KMICVPVLSEEMSADLRAVNEVATSIGKGLKKGDVISLNPSVPPGTTEDVIVPIIEKT
                     SGLSVERDFCMVYNPERIYEGRALQDIEENYPAIVSSIGPDSQKISHTLYSMIFRKGI
                     LMMSNIRTAEAEKLFEGVYRDVNIALANEMAKLCEAAEIDFWEAREAANSQPYCHIHK
                     PGIGVGGACIPIYPQFILDLARRLNVQSDITRMSRIINNSMPSYCVSRALQLVKITDP
                     SKLNVTILGLAFRGGVSDTRLSPTYVLIDELRKYGVNRIIIHDPLVSEDPNLSSDLIL
                     TSNLEEALKGSDLVILVADHPEYKKLGRDQLRNIPVYDGRGILNRKTDTGLSYAGLGV
                     RKGLKD"
     gene            complement(7112..8545)
                     /locus_tag="VFI64_04365"
     CDS             complement(7112..8545)
                     /locus_tag="VFI64_04365"
                     /inference="COORDINATES: protein motif:HMM:TIGR00379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042242 - cobyrinic acid a,c-diamide
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobyrinate a,c-diamide synthase"
                     /protein_id="HET7242556.1"
                     /translation="MSHLGLMVLGSLPLSLVVAGTTSGVGKTTVSLAIMYSLKDRMGY
                     NVQPFKVGPDFIDPTYHNIVTGNQSKNLDAWMMGKGGIIRSVFDASEGVDIAVIEGVM
                     GLYDGLSGKTDFASTAYVAKVLDAQVILIIDAGRAARSVAAMAMGYIQFDKAVNISGI
                     ILNNVAGEKHAQYIREAFEQKLKIPIIGIIRRDKELRLRERHLGLIPTDELDRKMKGK
                     VLDIARSVADEISFDVLLKIIENQKKFKQRKLPKEGTKKTVTKPTQPNKIRIAVALDN
                     SFNFYYAENLGVLQELGAEICYFSPIQDKKIPDDVSGVMIGGGFPEVMADKLSANGSM
                     RKYLAKLAEDDMPFYAECGGLMYLTKSIYGYTKSPKSFKMVGIVDAVTNMVGKLTLSY
                     TQADVLDNKYGKIANLRGHEFHYSRIEDAAKDLRYAYDMRRGYGINGKKDGVSIYNCL
                     ASYMHLHFSDHRFPKKWIDRCKEYAKA"
     gene            8767..>9202
                     /locus_tag="VFI64_04370"
     CDS             8767..>9202
                     /locus_tag="VFI64_04370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HET7242557.1"
                     /translation="MECLARKFSLISDLYSPRGDQPLAIDSLVGGLAGGHKIQTLLGV
                     TGSGKTFTIANVISRVNKNTLVISHNKTLAAQLYYEFKQFFPKNNIGYFISFYDYYQP
                     ESYIPQTDTYIEKDTEVNEQIEKMRLEATAMLMSGEPTIIVST"
BASE COUNT         2841 a         1794 c         1806 g         2761 t
ORIGIN      
        1 ttaacaactc agatcttgtc atgattctca gctaggagca tttttgctga aagtgatacc
       61 aaacaatagt cagggacatg atccaggata ctccataatc tataatctat tacttcagta
      121 gacatagtct ttattttata aagtccgcta gccctttaca tatcatataa gcggccgcgt
      181 aagcaggaag ccgttcaata gagtttttga ttctgaagta attttcatga agatataatt
      241 tcaaattgac tttgctccgt atgtatactt ggcggtcgtc tagcacacat gcagagtcaa
      301 gcggattaaa tgtctccaaa ttagtacttt ttactttaag taagctactt ttaccattga
      361 tcgttccagg cattctgaat atacgatgta tatctgtcgt aacgtgagga tcgatacgaa
      421 ctcctatcaa tttggcttta gttgagagat cttccttgaa ttgaccgtag cctccacttg
      481 attccacgat cctctttagc ttcgaaattg atgactgatt gatcccaaat tcactggcta
      541 ctcgtcttct ccatccaaat accatgccgc ttttaggaaa tttgatataa aagccattct
      601 tggatttacg aactccgatg ctttcattca ttatgccatt cccacagatg taatcaacaa
      661 gatcagacct ggctcttgaa tcaagagtct taaactccga atctggtacg tgtatatggt
      721 atccagcatt tccagaaaaa aatatttcta tacttccatc agctattccg aggtctccgt
      781 gtaaaaattc aattagccgt tgtgtttcct tcttaagaga aatcagacat tttctacaag
      841 ggattgtact acgagaaatt tttcttccca aacaaacggt gcatgcatta agaaaactta
      901 cattgcatgc gccacactga tcacacacat agaaggagtg ttctgatgag cagggcatgt
      961 tcaggtcttt gagatctata tcgaagataa gatcagcgcc ttcccattcc ttgctctgaa
     1021 ctgaattcgt cggaaatttg tagtagccgt tagagcaata aacgtctgaa ggtgattctt
     1081 gaactaatct tgcaattaat tctctcttgt tcctgaaaga gagatgcctt accataatgg
     1141 aatcaaatga catgtatccg aattcacgtt tttcaatcat agaaggagta actaacgaat
     1201 tgctatcttt aaaataatat tccctgaaca ggcccttaag aaacgagctg ttttcagatg
     1261 acgtcttcag gctcattgag tattcgcttt ctttcgtccg aattgaattg gattcaatat
     1321 attttcgcag tctacagtag caaaacaaag atcctcgctg tgtaatcttt tgcacgaagg
     1381 tactgaatat tttatgcggc tccccttatt tccagcgaga tgctcaattt ggtaacgagt
     1441 caccttttcg ttatagtcag gagagttctg aaacattgtt actatttcat ctgtattctt
     1501 gcctatcgtc agcatataag ttgcaagcat tactcttgcg gagtgtggaa gattttctcc
     1561 tgtattcatc atctcaatgg catgcttgat acagggggga taatcagaaa cgatatgatg
     1621 cttcctataa gtataataga ttgaaaattt cttcctaagt tcctcggcac aaattttgac
     1681 cctttctgga accaagggaa ttttcatggt cttaattcgg tcatagatca aattacttag
     1741 ctcactgcgt ataagtctga ccgcttcatc tgtatcgatg tacacatatc cagaatgaac
     1801 tgaccgatta atcaatttcc actcctgttc attcattttc gaagctcgca taaggtaatc
     1861 aggaacactt agtctgaata tggtcaagtc taaatcgaaa tgaatatcta tgtcaaataa
     1921 ctcctggaat atcttatgca atagtagttt tttcttctgt aaggattttt ctttgaataa
     1981 atcctctgtc aagaattttt cagttcgcat agcctctaat agcgaatgtt ttttggtcac
     2041 aggttctaaa ttaatcgact taatcattat gagagttacc agaaaactca gaatttcaat
     2101 ttcgtatttg tcaagatttg tataaacttt tcctgctgat atttcagttt ccagtatatc
     2161 gacggatcgt ctaagtatgt ggtccatttc cgggcggtca agttcctcaa ttgcaaatct
     2221 agtttccctg atgtactccg aggcttcctc aagaaaagga tattttgcca aatctgcagg
     2281 accgagtttt attgccaatc ctattgaatt catatctcag agttactata ataataatac
     2341 tgtcatgtat aatatatcgg ctctttaatt agtatctacg tatgaatgtt cagataggct
     2401 ttcatgtttc tattgccgga ggattgcaaa acgctgtaga taatgcgtca aaaataggat
     2461 gcaatgcatt tcaaattttt actagaaacc caagaggatg ggctgaaaaa gtcttgaacg
     2521 cacgtgatgt gcaaatgttc aaattaaagc tcagacgcag tggaataaat tccgatgctg
     2581 tcgcagttca tatgccttac ctacccaatc tttcggcacc aaacggcgaa ctttacaaga
     2641 aatccataga ttcgctaata agcgaactgc accgatgttt tcaattagaa attcctaagc
     2701 ttgtagtgca cttgggaagt catcttggaa gtggacctca aaacgggatc gaccagttag
     2761 tgaatagtgt caataccgca acagatcact ccaaatcctc cggtagaaaa aatggaaaag
     2821 tgactattct gttggaaaat agtgcaggac aaaaaaacag tataggcagc aaacttgagg
     2881 acataagatc catcctagat aaaatttcat caaagaatgt tggaatatgt atggacactt
     2941 gtcacgcctt tgccgcaggt tatgacttga gatctgaaaa aaagaatgac gactttgtcg
     3001 ataaatttga cagtataata ggcttggaaa aattaagact tatccaccta aatgattctg
     3061 agaaaggatt aggatcccac attgatcgcc atgaacatat tggacttggt aagatcgggg
     3121 ttaaaggagt gtcggcaatt ttgaaaaaca ggaaattgaa aggtaaaccc ataataatgg
     3181 aaactaaaga ggattccgtt agaaataatc tagacaactt acgagtagca ttagaactgg
     3241 caaattcata gtaagagcca atcttcaagg aaatggttga aaagatgaga ttagaggcaa
     3301 ctgcgactct tccaaactgg ttaacttggt gttctcaatt tcagtcgaat caagttcaga
     3361 agaaacataa atagtactcg tcttcgaatt ggttcgagca gaatgaacac atatgacaca
     3421 attatgaagc tagccctcga aagaggattt tactttcctt cctgcgaaat ctacggtgat
     3481 gcgccagctg gcttttggga ttatggaccg accggggtca atatgaaaaa tagattcgta
     3541 gaattatggc gaagggaact tgttcgacgc gacggaatgc ttgaaattga tggttcacaa
     3601 atcatgagta aaagtatttt tattgcatct ggccacataa ctaattttac tgatccaatg
     3661 atcatctgta agcagtgcgg atcaactttt agagcagata aacacatagc tgaaataaca
     3721 ggtcatgagc ttccagaatt agctagtggt tctgaaatag acaatattat agttgaaaat
     3781 aaattgagtt gtccaaaatg tggaggtcct tttgagaaat ctacccgatt caacatgatg
     3841 ttccagatag gcatcggtcc gtctaatgac gaggcatatc tcagacctga gacatgtcaa
     3901 tcgatatttg ttgatttccc tcggatcttt aagactatga ggggacgact acctttggca
     3961 atcgcgcaac tgggcaaaag ttttaggaat gaaatagcac cccgacaaag cttgctcagg
     4021 ctacgtgaat tctatcaggc tgagatagaa gttttttgta atccaaacag acttgacgag
     4081 gtaccaaaat tcgaagaaat gaagaaaaaa atactcagat tgtacattaa cgattcgtac
     4141 catgagatca ccgcacaaga ggccgttcat caacttataa taccaaacaa tctagttgcc
     4201 tattacctaa cactcttagt tctgttctat gaaaaaactg gaatcgacat gaatcgtaca
     4261 cgcctaagac aactttcgac cagcgaaaaa gcattttatg cctcttttgc gtttgatttt
     4321 gaagttgaaa cgagcattgg ttggttggaa ttggtggcat gtaattaccg ttccgattac
     4381 gatctccggg gacattccac agtaagcaaa cagaatttgc acgtgattga tcccattgac
     4441 aataccaagg tccttcctaa tgtatttgag ttgtctatgg ggatagatag aagtatttat
     4501 tcaatcttag agcattcatt tttcgaagac ttcgaacatg aaagaacggt tctgagatta
     4561 agaccgtatc ttgcacccat attagcagga attcttccac ttataacaaa agatggattg
     4621 cgagaaaaag ctcaactgat ctattctcaa ctcaaattag atttcccagt tttttacgat
     4681 gagtctggtt caatcggaag aagatataga aggcttgaag agattggtac accttttgca
     4741 gtaacggtcg ataggcaaac cctttctgac gacacagtga cgatcagaaa cagagataca
     4801 atgttgcaag taaggattca aatatccgaa ctctctaatt atctccataa agaagcatac
     4861 aaattagtgt catgacagat ttgaacaaca atttactttc acgtccaatg tagagatgtt
     4921 ttttgattct aagcagaata ataaaccggc agagtggaac ataaattgat atacaagtag
     4981 atacgaatgc ttctgagtga ttcagtagac ccatgtcttc acatgaccca aatcctcttc
     5041 catatggtgc tcttccatac tatcaggttc attttatagt agactctgtc aaagttgtag
     5101 atcctgctat tttcatggct aagtgtgagc ctctaaccag aggtcatctt ggaaacaaaa
     5161 cagtaatagc tttacagtgg agtggaggga gattagccga cgtactaata tcggacaaaa
     5221 cattatccga aatgttgatg cccttaatgc tagatgaagg tgaaatcaga attgaccccc
     5281 aggataacag agtaagaatt tacacaagtt ggaaaagaga agacaatctt aaatttagtt
     5341 tgagcttctt taaggctata gaaagaattg ctaccacaat cagacaatta tctaaataat
     5401 agcaggtata attaagaaaa cagtatacca atgttccttt catatcaaaa tggcgagcaa
     5461 gatagtcagt tgattataca gtattcaaat cgggcgtaat caaatatata cagaattgaa
     5521 cgcatcagaa gtactttatg gtttctactt cagtctctgt cgcagacacg gattatgacc
     5581 tgatccggca gatcaaggat ggaagtttaa agattgcaat atatggatta ggtcatgttg
     5641 gatctccgct agccgcagct tggctgaggg ctggtgccca tgtaataggt gttgacaatt
     5701 ctcgaaaggt attaagagca gcaatggaag gtcggacttt gattccagaa cctggaattt
     5761 cggaggcata cgcagaggcc ttgaaaaaca atcgttttga attatttgaa gatccaatag
     5821 aggcgtccaa aaagtcgtat ttcaaaatga tctgtgttcc cgttctgtct gaagagatgt
     5881 cggctgatct tagggcagta aatgaagtag ctacatcaat agggaaggga ctaaagaagg
     5941 gagacgtaat ttccttgaac cccagcgtgc ccccaggcac aacggaagat gtcattgttc
     6001 caataataga gaaaacaagt ggcctgtcag ttgaacgcga cttttgcatg gtttacaatc
     6061 ctgagaggat ctatgaagga cgtgcattgc aagatattga agaaaattat cctgctattg
     6121 tatcatcgat tggtcctgac agtcaaaaga tatctcacac actttattcg atgattttta
     6181 gaaaggggat actaatgatg agtaatatta ggacagccga agcggaaaag ctctttgagg
     6241 gggtgtacag agatgtcaat attgctttag ccaatgagat ggcaaaatta tgtgaggcag
     6301 ccgaaatcga cttttgggaa gcaagagaag cagcaaattc tcagccctat tgtcacatac
     6361 ataagccggg cataggtgtt ggtggtgctt gtattcctat ctatccacag tttattttgg
     6421 atcttgcgcg acgcttaaat gtgcaaagtg atatcactcg aatgagcaga attattaata
     6481 attcaatgcc atcttattgt gtaagccggg cattgcaatt agtgaaaata actgatcctt
     6541 ctaaactaaa cgtaaccata ttaggacttg cgttcagggg gggagtgtct gatacgcgct
     6601 tatcaccgac ttatgtattg atagatgaat taagaaagta tggcgtgaat agaataataa
     6661 ttcacgatcc ccttgtcagt gaagatccga atcttagcag tgatctgatt ctgacatcca
     6721 acttagagga ggcactgaaa ggcagcgacc ttgtgatatt agttgccgac caccccgagt
     6781 ataagaagct tggaagagat caattaagaa atattcctgt ttacgatggt cgaggaattc
     6841 ttaacagaaa aacagatact gggttaagct atgccggcct tggagtaagg aagggtttaa
     6901 aagattagta gcaatttaat tggttttaca tcgagtcatt tcttgattcc gtaaaacgaa
     6961 ccatcattga agtgtgaaag caatgtattt gactctgtca cttgacttcc aaaccagttt
     7021 agcgttcgaa aaaatgaatg gaagaacaaa ggcattcggg gttagttgga gatttggagt
     7081 gctttgatac atgttactcc gagtaacaat gttacgcttt ggcatattct ttacatctgt
     7141 cgatccactt tttcggaaat ctatggtcag agaaatgaag atgcatatat gaagctaggc
     7201 agttgtaaat cgacactccg tccttcttac cattaattcc atagccccgt cgcatatcgt
     7261 aagcatatct taaatcttta gcagcatctt caattcttga atagtgaaat tcatgccccc
     7321 ttaagtttgc aatcttccca tacttgttat ctaggacatc tgcctgtgtg tagcttagag
     7381 tcagcttacc aaccatattt gtaactgcat caactatccc aaccatctta aatgattttg
     7441 gagattttgt atatccatag atggacttcg ttaggtacat gagaccacca cattcagcat
     7501 aaaatggcat atcatcttct gcgagctttg ccaaatattt gcgcatagat ccatttgcac
     7561 ttagcttatc tgccatcact tctggaaatc ctccacctat catgactcca gaaacatcat
     7621 cagggatctt tttgtcctgg ataggactga aatagcaaat ttcggcccca agttcttgca
     7681 aaacacccaa attttctgca taatagaaat taaaggaatt gtccaatgcc acagcaattc
     7741 ttattttatt aggctgagtc ggcttggtaa ctgttttctt tgttccttct tttggtaatt
     7801 ttcgttgttt gaattttttt tggttttcga taatctttaa taaaacatca aagcttattt
     7861 cgtcagccac acttcttgca atatccaata cttttccttt catctttcga tcaagttcat
     7921 ctgtgggaat caggcctagg tgacgctccc ttaaccgcaa ttccttgtct ctgcgaatga
     7981 taccaataat agggatcttt aatttttgct caaaggcttc tctaatatac tgagcgtgct
     8041 tttcacctgc gacattattt agaattattc cagatatatt gacggcctta tcaaattgta
     8101 tatatcccat tgccatagcg gccacagacc ttgctgctct accagcatca ataatcagta
     8161 taacttgcgc gtcgagaact ttggctacat aggcggtgct agcaaaatca gttttgccgc
     8221 tcagaccatc gtacaatccc attactccct cgattacagc tatgtctaca ccttctgaag
     8281 catcaaagac actccgtatt attccccctt ttcccatcat ccaggcatcc aagttcttag
     8341 actggtttcc agttacaata ttgtggtagg taggatcgat aaagtcaggc cccactttaa
     8401 aaggctgaac attgtaaccc atcctatctt tgagagaata cataattgcc aacgatacag
     8461 tcgttttgcc cacaccactg gtcgtacctg ccactaccaa gcttagagga agggatccca
     8521 agaccatcaa acctaaatga ctcaagtcac cttattaacg atgagatctt tcccctcttt
     8581 gattggccgg caaatgagtc tttgcgttgg gattgatagt gacagaaata ttttatcgtt
     8641 ttgcaccatt gtgataatga agagtttgct actttacaaa gcaaggaata ggctagtgtc
     8701 gatgtaaagc gggttaacga tgacattaac aatatatatg catcagaaac cttaatctac
     8761 cctctcatgg aatgtctcgc tagaaaattt tcgttgattt ctgatctata ttccccacgt
     8821 ggcgatcagc ctcttgccat agattcattg gtcggcgggt tggctggagg ccataaaatt
     8881 cagaccttgt taggtgttac tggtagtgga aagactttta caattgctaa cgttatatcc
     8941 agggtaaata agaatacgct ggtcatatca cacaacaaga ctcttgctgc ccaactttac
     9001 tatgaattta agcaattttt tccgaaaaat aatattgggt atttcatcag cttttacgac
     9061 tactatcagc cagaaagcta tatcccacag actgatacat acatcgaaaa agatactgag
     9121 gttaacgaac agatagaaaa gatgagatta gaggcaactg caatgctgat gtcaggcgag
     9181 cctactatca tcgtgtctac ag
//
LOCUS       DASSIK010000232         2309 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1349328, whole genome shotgun sequence.
ACCESSION   DASSIK010000232 DASSIK010000000
VERSION     DASSIK010000232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2309)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2309)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2309
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1349328"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..372
                     /locus_tag="VFI64_04375"
     CDS             <1..372
                     /locus_tag="VFI64_04375"
                     /inference="COORDINATES: protein motif:HMM:NF012365.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase subunit C"
                     /protein_id="HET7242558.1"
                     /translation="IKYGIKCRTNMNCYAFGQKYILIGLAILTIVFGGTLAADLNAYA
                     QQAGEKAGSSDSGSKLIGAGMAFGLAAAGSGIGLGFVGAAGLAAISDNPKMQSRVFIF
                     VGMVESIAIYGIVMMFIILGQ"
     gene            648..>2309
                     /locus_tag="VFI64_04380"
     CDS             648..>2309
                     /locus_tag="VFI64_04380"
                     /inference="COORDINATES: protein motif:HMM:NF013647.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0033179 - proton-transporting V-type
                     ATPase, V0 domain [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_function: GO:0046961 - proton-transporting ATPase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATPase 116kDa subunit family protein"
                     /protein_id="HET7242559.1"
                     /translation="MGLAKLLKATVILPRIETQEAVSKLAGLEFFHSLPSSSEFSQPY
                     MDDLMLKAQRLFQDIDEVVRALGIPLETGVMSTMFKGAPRDKTDYAIQDIRGFIEELE
                     KKSSIILEEPKSLIAMQNNIAKELEEYRNIATALKAAANFNLDLSSFKNLKRFFAETF
                     LVDSKDVDEIQRSLSDLTIYTNKLNDEKSSIVIIGSNEDSERIIKVLRSFNVHPIQIP
                     SHLPQNPSSAYAQCETKVKELEKKSEELSKKIEALKKSSILPKILSLHEAAKAAKDVL
                     ETTRKPAGTKNFAMLQGYIPDDSKKKFKNLTRDYVSILEDVTVQNKQIEEEMVATGGW
                     TETDVKKEKTAIPTLLSNKKYIKTFEVITQSQGTPGLGETDPTPIIAFVWPLFYGIMF
                     ADLGHGLLLFGLGMLLRQRGNGSIRTWGTLLATSGAAAALAGLATGEVFGFHVTEIAI
                     LKPVFEPLGSIVGVLNVSELSFDQVIKILKVSVAIGIVHMLMAHFLRLRKDIQDGNKN
                     FVLTHDIPTIIQFLAVVALILAAIGSGYDIIGMFGVTGEIHNEPVP"
BASE COUNT          746 a          432 c          508 g          623 t
ORIGIN      
        1 attaaatatg gcattaagtg tcgaaccaat atgaactgtt atgcatttgg acaaaagtac
       61 atactaatcg gattggccat tttaacaatt gtgttcggtg gtactttggc agctgatctt
      121 aatgcatatg ctcaacaggc cggtgagaag gcaggttctt cagattcagg atcaaagctg
      181 ataggagcag gaatggcatt tggcttggca gcggctggat caggtatcgg tcttggattc
      241 gtaggcgctg cgggattagc cgcgatcagt gacaacccaa aaatgcagtc tagggtgttt
      301 atctttgttg gtatggtaga gtcaattgca atatacggta tcgttatgat gttcattatc
      361 ctgggacagt aaaagcagaa aaatagaaca aaccacgatt cagcgctatt gaagcatatt
      421 caaggttccg taaatagtat tgaaagctgt accttgatta cttggggata attctcatac
      481 cttggcttta aaataaagtc atttttgtta agctgatcat gcctttttat cataactttt
      541 ccatcatatc aaaatgcaat ccgatttcga ctgtcagcta aggtcgcttc cgtagatacc
      601 aaaaggaaag actttaaaga gtctgaacca tcagacaacc caaagagatg ggactggcca
      661 aactactaaa ggcgacagtt atcttgccaa ggatagagac gcaggaagca gtgagcaagt
      721 tggcgggcct tgaatttttc cattcactcc caagctcatc tgaattttca caaccatata
      781 tggacgatct catgctaaag gcccaaagat tgttccagga tatagacgag gtcgttagag
      841 cattgggcat ccccttggaa acaggcgtaa tgtcaaccat gttcaagggt gcacccagag
      901 ataaaaccga ttacgccatt caagatattc gaggcttcat agaagaattg gaaaagaaaa
      961 gtagcataat acttgaagaa cccaaatcct taattgcaat gcagaataat attgcgaaag
     1021 aactggaaga ataccggaat attgctacag ctctcaaggc tgcagcgaac ttcaatttgg
     1081 acctttcttc ttttaaaaat ctcaaaaggt ttttcgctga aactttcctc gtcgattcaa
     1141 aagatgtaga tgaaattcaa agaagcctta gtgacttgac aatttacact aataagctga
     1201 atgacgaaaa atcatcaatt gtaatcatag gttcaaatga agattcagaa agaattatca
     1261 aagtacttcg aagtttcaat gtgcatccca ttcaaattcc ctcacactta ccacaaaatc
     1321 caagttctgc ctacgcccag tgtgaaacca aggtaaaaga acttgagaaa aagtcagagg
     1381 aattgtcaaa gaaaattgaa gcattaaaga aatcatcaat attaccaaag attctgtctc
     1441 tgcacgaggc cgcaaaagca gcaaaagatg tacttgaaac tactagaaaa cccgcaggga
     1501 ccaagaattt tgcaatgctt cagggctata tacccgacga ttcgaaaaaa aaattcaaga
     1561 atctgacgag agattatgtg tcaatcctgg aggatgtcac agttcagaat aagcaaatag
     1621 aggaggagat ggttgccact ggtgggtgga cggagacgga tgtcaaaaaa gaaaagactg
     1681 caattcccac tcttctttct aacaaaaaat atataaaaac tttcgaggtc atcactcaaa
     1741 gtcagggtac tccaggatta ggtgaaacgg atcctactcc aatcatcgca tttgtctggc
     1801 ccttgtttta tggtatcatg ttcgctgatt tgggacatgg gctacttcta ttcgggcttg
     1861 gtatgctgtt gagacaaaga ggaaatggtt caattagaac ttggggaacg ctgctagcta
     1921 caagtggcgc agcggctgct ctggcaggat tggcaacagg agaagtgttt ggatttcatg
     1981 taacagagat agccatattg aaaccggtgt ttgaaccatt aggaagtata gttggggtct
     2041 taaatgtctc agaattgtca ttcgatcaag taattaagat actgaaggtt tctgtagcta
     2101 tagggatcgt tcacatgcta atggctcatt tcctcaggct tagaaaggat atacaggatg
     2161 gtaacaagaa tttcgtattg acacacgata ttcctacaat tattcaattt ctagcagtag
     2221 ttgcgctcat actggctgct ataggctcag gttatgacat tattggaatg ttcggggtta
     2281 cgggtgaaat tcacaacgaa ccagtacct
//
LOCUS       DASSIK010000233         3010 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_539172, whole genome shotgun sequence.
ACCESSION   DASSIK010000233 DASSIK010000000
VERSION     DASSIK010000233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3010)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3010)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3010
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_539172"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..419)
                     /locus_tag="VFI64_04385"
     CDS             complement(<1..419)
                     /locus_tag="VFI64_04385"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HET7242560.1"
                     /translation="MKRSSSISGPDSSIENLSKLISSKAISPVDLIEYTFQQIHKLNP
                     TLNAFITVLEDSARKDAKEAESLINQGKYKGPLHGIPVSLKDLIYVKGVRSTSGSKIL
                     ADYVPDHDSTVVKKLRAAGAIIVGTNNTHEFACGITN"
     gene            892..1437
                     /gene="purE"
                     /locus_tag="VFI64_04390"
     CDS             892..1437
                     /gene="purE"
                     /locus_tag="VFI64_04390"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: protein motif:HMM:TIGR01162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009320 - phosphoribosylaminoimidazole
                     carboxylase complex [Evidence IEA];
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HET7242561.1"
                     /translation="MTSRKSHTIKHDYLRNKHPHIDRPIVSIAAPSIYLVNKIKETKE
                     VLDSFEIPYSVSIVAAHRAPRKTLRYIDELESSGIEVIIACGSGSAHLPGMIASLTTI
                     PVIGIPLVSDHLGGIDSLLSMLQMPAGVPVATVGIDSAYNAGIIACQILSLKYPHLKN
                     MIRSHKSMLEQTVELEDRTAN"
     gene            complement(1477..1659)
                     /locus_tag="VFI64_04395"
     CDS             complement(1477..1659)
                     /locus_tag="VFI64_04395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242562.1"
                     /translation="MIVTPYNRTHKVSPRVRRCISELESLAITPNRLNELNDAYEMED
                     LVDNIKLALYKEYKSD"
     gene            2795..>3010
                     /locus_tag="VFI64_04400"
     CDS             2795..>3010
                     /locus_tag="VFI64_04400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242563.1"
                     /translation="MNFSILEGLVTISKVLLVDDNIDRLTIFQEGLERYGLSVKGYSS
                     PLDALTEFHSGIFDVAIVDIMMYAKYGK"
BASE COUNT          926 a          520 c          571 g          993 t
ORIGIN      
        1 atgttagtaa tcccacaagc aaattcatgg gtattattcg taccaacaat gattgctcca
       61 gcggctctta gtttttttac taccgtcgaa tcgtgatcgg ggacataatc ggcgaggatt
      121 ttcgaaccgc tagtgctccg tacgccctta acataaatca ggtccttgag actaacagga
      181 attccatgca aaggcccttt gtatttgcct tgatttatca atgactctgc ctctttggca
      241 tcctttcttg ctgaatcttc caaaactgtt atgaatgcat taagggttgg atttagctta
      301 tggatctgtt gaaatgtgta ttcaataaga tccactggtg atatcgcctt agaagaaatg
      361 agtttagaaa gattttcaat actcgagtca ggaccggaaa tgctagacga tcgtttcatt
      421 ccccatcact agttgaatac gtataagtat ctgaaaagga ggaaaacaat actatccttt
      481 gatttatttg gcagttatta aacaatactc cacaccgtta atacactgtc ataggaattt
      541 atgacctaat ctgataatct tgttgaaagg taacatatac cctacatcgt aaattttgtt
      601 gtctatggag gatatcttgt gttctggaaa tatcatgaaa acaaatttta tttgatggca
      661 tgatattttt aagatgaata tcgatgtcaa aggtgaaaga cttattttat tctaacttat
      721 cgggtcacgc attaatcaaa ggtaactaat ttctgtggat tagaaaattc gaattggtga
      781 ggtgactgag tatgcagaga ttgtgatgtg gtgaatccca gattattgat caggtcgtct
      841 gagtctagca aatcacttat aatcttgggg ttaatgtctt aggtaataaa catgacgagc
      901 cgtaaatctc atactatcaa gcatgactat ttgcgaaata aacatccaca tatagacagg
      961 cccattgttt caatagctgc tccttctatt tacctggtca ataaaataaa agagactaaa
     1021 gaggtattag attcatttga aatcccttac tcagtctcga tagttgcagc acatagagca
     1081 cccagaaaga cactgaggta tatcgacgaa ctcgaatcta gcggaataga ggtgatcatc
     1141 gcctgtggaa gtggatctgc tcacttacct ggtatgatag cttcactcac taccataccc
     1201 gtcattggaa tacccttggt cagtgatcat ctgggtggca tcgattcttt gctttccatg
     1261 ttacagatgc cagcgggtgt acctgttgct acagtaggga ttgattctgc gtacaatgcg
     1321 ggtattattg cttgccaaat attgagtttg aagtatcctc atcttaagaa tatgatcaga
     1381 tctcataaga gcatgctcga gcaaactgta gaacttgaag ataggactgc aaattaaggc
     1441 gggtataaag atatagttat attgctggtg gtaagcctag tccgatttat attctttata
     1501 caatgccagc ttaatattat ctaccaaatc ttccatctcg taagcatcat ttagttcatt
     1561 gagtctattt ggggttatgg caagagattc cagttcagat atacaacgtc gcactctagg
     1621 agacaccttg tgagttctat tgtaaggtgt aacgatcatg ggttaagttt atacttcatc
     1681 ttattttaag gttgtatcag gagaaatttt actatcctga gcgtactttt agactaatcg
     1741 gtatttacat tagatactgg gaaggaattc gtaaattcag atatttctac ttaatcaact
     1801 gttgtcataa gaaaaagcag ttatgatggg gtgaaaatat actttgtatc tgtcatttgc
     1861 gatatttcgt cctcatctgt tactatggta tcaatgcgat gttcggattc aagacaacag
     1921 ttgcaatatg caccttcaca atcacagaca tatcgatgtg gacacaccaa gcacttacat
     1981 cccatggtaa ttaatcgtct tcgtgatata aaacatttct tgtcacactt tgttactgta
     2041 tctatcacac agcgacatgt attagtcctt accaaagata ggtactagac gtaataaagt
     2101 atgggctggc tattggttct ttgactctca tattgcttca aaccagccca ttgtagatct
     2161 ttgaggatat gttgcgttat tctttccatc acattcatgt catgcctaac ttcaattgct
     2221 gacggattcg cacctacggc aagtcctaat atggtaaaat agtattaaag cttttaatat
     2281 taaattaaat gcaatcttta gagtttctaa ataattaggt tacctgtaca agataatcga
     2341 agttcacatg tttcgtcaca atgccaaata gaaatagatt atgtttcata agaaatattt
     2401 tgtttctgca actattcttt tagaaaatca tagctttgct ccccttgatt aacgaagtct
     2461 ataattatta ccattttagg tatagcaata tgtacgaact tttacttatc aaagtggttt
     2521 ccttgcgtta ccggtttata taatgcaatg taaatgatac taattatgat acaaggcttt
     2581 atataatatt ttgtcaatgt atctccatga gaaataatat atcctgcgct tcttgtaata
     2641 gaaaaattga agacgacgat gcatgtgttt atttaacaaa ggaaaatgga acaaagtatg
     2701 tctttgacag ttatgtatgt gccgaaatat ttcaaacctt aaatcatgta aagcgcaatg
     2761 tgaatattcg agaggtagta ccatttgtta aataatgaat ttttccattc tggagggatt
     2821 agtaacaata tctaaggttt tattggtcga tgacaacata gatcgtctta caatattcca
     2881 ggaagggtta gaaagatatg gcttaagtgt gaagggctat tcaagtcctc ttgatgcatt
     2941 aacagaattc cattctggaa tatttgatgt ggcgatagtc gatataatga tgtacgcaaa
     3001 gtatggcaaa
//
LOCUS       DASSIK010000234         3671 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_939487, whole genome shotgun sequence.
ACCESSION   DASSIK010000234 DASSIK010000000
VERSION     DASSIK010000234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3671)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3671)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3671
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_939487"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..613)
                     /locus_tag="VFI64_04405"
     CDS             complement(<1..613)
                     /locus_tag="VFI64_04405"
                     /inference="COORDINATES: protein motif:HMM:NF014625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIG-L family deacetylase"
                     /protein_id="HET7242564.1"
                     /translation="MRTKTVVAFGAHPDDLEIGMGGTIAKLAGLGYDVKLVVATLPNF
                     VKTDTKEERSSESTNSAKIMGCPAPDLLDIPPEELTFGRNFVTKIDGIVQKFQPEVVF
                     TQWIGDSHQDHQALTRAVIAACRDQNDVFMYETTIPGGITENAFRAQLFVDITNSIDV
                     KRKALECFKSQMIRCGHLWIPAVVGRCSYRGYQINVTYAEAFEV"
     gene            complement(638..1594)
                     /locus_tag="VFI64_04410"
     CDS             complement(638..1594)
                     /locus_tag="VFI64_04410"
                     /inference="COORDINATES: protein motif:HMM:NF015411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HET7242565.1"
                     /translation="MSAQNKPKIMFEKVLVVGLGQLGLPVAKYVKQKGFDTYGYDINP
                     HALEFAFENYGIKKIETFSDIDVFILCISTHKPNDIYSPHIDGLLAIAEKISKEAKDG
                     SLVSIESTIAKGTSKKIFELLNHRLHVAHAPHRWYALEEDIHGVNQLRVIGGVSDCCL
                     RLAMGFYDGRNNNLINTDIMGAVIENEDIKNNRSLEIPMHPVSEIEIAELTKIIENAN
                     RYMQIAFAEDLYLYCQANNIGFSELRNALNTKWNVNILEPRDGIGGHCLPKDTKMFIH
                     SSRSVRSKILSAALEVDSDYRRHRQSRYSPLLSVPSPKVDVN"
     gene            1854..3065
                     /gene="ychF"
                     /locus_tag="VFI64_04415"
     CDS             1854..3065
                     /gene="ychF"
                     /locus_tag="VFI64_04415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchF-related putative GTPase"
                     /protein_id="HET7242566.1"
                     /translation="MIRVGLIGKTNAGKTTFFNSATSSNEEISTYPFTTKHPKIGNAS
                     VISLCVHREFNLKDSPKNSTCVDGWRFIPIELVDLPGLIKGAWEGKGLGNQFLSVAAQ
                     SDVLLHIVDASGSIDSSGRLAEPGTGDPIADVSDIEEEMILWYLKLFEGNRDKIIRSI
                     NSGSDAVQSITEIFQGIGVKEWHVKRALEENELNDKKIGDFDPLQSRRFASTLRELSK
                     PTLIVANKVDLSAAADNFKRLREHNKHMLVVPCSADAELTLRRAQVKGLIRYFPGDER
                     FEINEKTSLNEKQKWALNFIRKDILGEYLQTGVQFALNVAVFKLLNMNVVYPVADPGK
                     LSDKRGNVLPDAYLMRSGSSVEDLANEIHSDLAKGILYAVDVRNGLRLPINYLVKDRD
                     VLSIISAMKKK"
     gene            3062..3187
                     /locus_tag="VFI64_04420"
     CDS             3062..3187
                     /locus_tag="VFI64_04420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242567.1"
                     /translation="MNTSTKLSICLGVHIVDEESKVEDEFEEQLKKDLDEDGCDE"
BASE COUNT         1122 a          690 c          736 g         1123 t
ORIGIN      
        1 ttacttcaaa agcctccgca tatgtcacat tgatttgata acctctgtag ctacatctgc
       61 ccactactgc cggtatccat agatgtccac aacgtatcat ttgggattta aaacattcaa
      121 gagccttcct ctttacatcg atcgaattag tgatatctac aaatagctga gctctaaatg
      181 cgttttcagt tatgccacca ggaattgttg tttcgtacat gaaaacatcg ttttggtctc
      241 gacatgcggc tattactgcc ctagtaagtg cctgatgatc ctgatgtgag tcacctatcc
      301 attgtgtgaa cacgacttcg ggttggaact tttgaactat tccatctatc ttagtaacga
      361 agtttcttcc aaatgtgagt tcttcgggag gaatatccaa taaatctggg gcgggacatc
      421 ccattatttt agcagaattt gtcgattccg agctcctttc ttcctttgta tccgtcttca
      481 caaaattagg aagtgttgcg actactagtt tcacgtcata ccctaatcca gccagtttag
      541 ctatagttcc tcccatccca atttcgaggt catcaggatg ggctccaaaa gccactaccg
      601 tcttagttct catatagatg aaaaaccagg ctctaagtca gtttacgtcg accttggggg
      661 aaggaaccga gagtagtggc gagtacctag attgtctatg cctcctataa tcagaatcaa
      721 cttcaagtgc tgcagaaaga attttacttc taactgatct tgatgagtgg ataaacatct
      781 tggtatcctt tggcagacaa tgacctccga ttccgtctct tggttccagg atgttgacgt
      841 tccactttgt gttcagagca ttccgtagtt ctgaaaaacc tatgttattt gcttgacaat
      901 acagatagag atcttctgca aatgcgattt gcatgtatct gttagcattt tctattatct
      961 ttgttagctc tgctatttcg atttcagata caggatgcat aggaatttcg agacttctat
     1021 tatttttaat gtcttcattt tcgataacgg cacccataat gtcggtattg ataagattat
     1081 tgtttcggcc atcataaaat cccattgcta aacgtaagca acaatcacta actcccccga
     1141 taactcgcaa ttgattgaca ccatgaatat cttcctctaa tgcgtaccat ctatggggtg
     1201 cgtgtgcaac atgaagtcta tggtttaaca actcaaaaat cttttttgag gttccttttg
     1261 caatagtact ttctattgaa acaagagagc cgtctttggc ttcctttgaa atcttttctg
     1321 ctattgctaa taagccatct atatgaggag agtaaatgtc gttaggtttg tgtgttgaaa
     1381 tacataagat aaacacatct atatcactaa atgtttctat tttctttata ccgtaattct
     1441 caaaggcaaa ttccagggcg tgtggattga tatcgtatcc gtatgtatca aaaccttttt
     1501 gtttaacgta tttggctacg ggtagaccta attggccaag ccctacaact agaaccttct
     1561 caaacatgat ttttggttta ttttgtgccg acaattccat ctagaatcca ggaaattaat
     1621 tattaaagcc ttgagaaaga ttgaatgata aattattcag tatgaatact tatgttgagt
     1681 tcgtatagaa gtattggagt gtagtctatt tagtcaccag attgatccat tgcatttcta
     1741 ttcaaagaaa agaagagaag tcaaaatata gcactgaaaa catttacttt atttggagac
     1801 aaacgtgcga acagattgct acatataaat aatcttttgg tgaaaaaaca gatatgataa
     1861 gagttggtct aataggaaaa actaatgctg gtaagactac gtttttcaat tctgctacat
     1921 caagtaatga ggaaatctca acttatcctt ttacaacaaa acaccctaag atcggaaatg
     1981 ccagcgtaat ttccctttgt gttcatcgag aattcaattt aaaagattct cccaagaatt
     2041 ccacttgtgt agatggatgg cgatttatac ctatcgaact tgtcgatctc cccggtctaa
     2101 taaagggtgc ttgggaaggt aaaggactag gcaatcaatt cctatccgtc gcagcacagt
     2161 ctgatgttct tctacacatt gtcgatgctt caggaagtat agattcttca ggaaggctag
     2221 ctgaacctgg cacgggtgat ccgattgcag acgtttcaga tatcgaagag gagatgattt
     2281 tgtggtacct gaaattgttc gaaggtaaca gggacaagat aatacgatcg ataaactcag
     2341 gttctgatgc agttcagtca ataacagaaa tcttccaagg aataggagtt aaggagtggc
     2401 atgtgaagag ggcgctcgaa gaaaacgaat taaacgataa aaaaatagga gattttgatc
     2461 ctctccaaag cagaaggttc gcttcaacgt tacgtgagct atctaagccc acactaattg
     2521 ttgccaataa ggtagacctt tcggcagcgg cagataattt caagaggctt cgtgagcata
     2581 acaaacacat gctcgttgta ccctgtagtg ctgacgccga actcacattg cgaagagctc
     2641 aagtcaaggg tcttatacgg tatttcccag gggatgaacg gtttgaaata aatgaaaaga
     2701 cgtcactaaa tgaaaagcaa aagtgggcac ttaatttcat aagaaaagat attcttggtg
     2761 aatatttgca gacaggggta cagttcgcat tgaatgtggc agtgttcaag ttattaaaca
     2821 tgaacgtggt atatcctgtt gccgatccag gcaaattatc agacaaacgt ggaaatgtcc
     2881 tgcccgatgc gtacttaatg aggagtgggt catccgtaga agatcttgca aatgaaattc
     2941 acagtgattt agctaaagga atattatatg ctgttgatgt gaggaatgga ttaagattac
     3001 ctataaatta tttggtaaaa gacagagatg ttctgtcaat aatatcggca atgaaaaaga
     3061 aatgaatacg tcaactaaac tgtcgatttg tttgggagtc cacattgtgg atgaagaaag
     3121 caaagtagaa gatgaatttg aggaacagct gaaaaaagac cttgatgaag atggctgcga
     3181 tgagtgacgt tcttggtcta aacgcttggc acaaagaacc ggaataatgt cgatggtctc
     3241 aattctttat gggaaaaaaa ctttggatta ctttttataa tcgctcaaaa tatctcgata
     3301 tcttatatcc ttgtaagcaa tgtaccttac atactcacca tacgtcatat taagcgaaca
     3361 atgggagcat ttgacaaagc tgaaatcgtc agacagttcg gcagattttt tacaatcagg
     3421 acaaattatt ttcataccta cggttgtctc tgtaacgtaa taaatgatct cattctatgc
     3481 aaaaataggc actgctggga gataatcaga ttttgaaaaa ttgagaaata acgtgttatt
     3541 aaatagtctt aagctgcttc actattggtt gtctgccctt tctgaagacc cggaacccgc
     3601 aaatgcactt tatttcggga agtttcgaca attcagtatt agtcacagga gttccgcatc
     3661 tcatgcattc a
//
LOCUS       DASSIK010000235         2988 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_741174, whole genome shotgun sequence.
ACCESSION   DASSIK010000235 DASSIK010000000
VERSION     DASSIK010000235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2988)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2988)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2988
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_741174"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(107..397)
                     /locus_tag="VFI64_04425"
     CDS             complement(107..397)
                     /locus_tag="VFI64_04425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242568.1"
                     /translation="MSLDTTTKALIEQLIDRKLAMIPVVASMIRLSNKENRLSYTNET
                     DFIYGFVYCEILTSCLSFITSNYARIPEEEEMNEVKNIISLRMLNKKPQDHG"
     gene            917..1597
                     /locus_tag="VFI64_04430"
     CDS             917..1597
                     /locus_tag="VFI64_04430"
                     /inference="COORDINATES: protein motif:HMM:NF012383.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase family protein"
                     /protein_id="HET7242569.1"
                     /translation="MSSIKDGSILKFKDREKAAHTLASVLKDSLKGASREEVTVIGIP
                     RGGVIMAQVISQKIAAPSFDIVISRKLSAPHNVELGIGATMEDSTLYLNDYVVNALKV
                     TPEYIEKEKQKQIKEIKRRESLYRSSAKGYEIKGRIIVLVDDGAATGATLVAAARWIR
                     KQEPKKLIIAIPVVPRETLELLKKEADHVEAVIIPITTNFRSVGQFYEDFSPVSDEDV
                     MKIMKDQK"
     gene            complement(1809..>2988)
                     /locus_tag="VFI64_04435"
     CDS             complement(1809..>2988)
                     /locus_tag="VFI64_04435"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0016655 - oxidoreductase activity, acting
                     on NAD(P)H, quinone or similar compound as acceptor
                     [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH dehydrogenase (quinone)
                     activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HET7242570.1"
                     /translation="YYSLILLSSIGMILIAYSTDLVMLLVSWELMSIPTYALAAFSKR
                     DPISNEAAIKYFLFGALSSAILVVAIGLVYGITGSTNIGVALMAFVTLPQNLAPVGLL
                     AIALFVAGFGFKMGLVPFHMWLPDAYEGAPTTIGALLAAGTKKAGFAAAIRVIVLGMF
                     VLNLDWTMILAIIAIFTMTLGNLGALVQRSVPRILAYSSIAQAGYIMIGLALAPYSDQ
                     ALTGSLFHIMNHAVMKSAAFIAAAAVATALAGYSLERYRGLGRRMPITAIAFSISLLA
                     LAGVPPLNGFWSKLVIFGAAINTGETVWWGPYLAIAAVLNSALSLGYYAWIMRKMYME
                     EGPDMSRVKEPRSMIAVLVFAMVFMVGFGIWHGPILEFASHSVPALSQLAHAMSITPR
                     "
BASE COUNT          939 a          594 c          597 g          858 t
ORIGIN      
        1 cttctaatgc aaataccccc aaaaacttcg ctgttccata aacctgtaaa cttcttggat
       61 tgagattctt cctcatattc gtattaattc aggatgcttt tatttcctat ccatggtctt
      121 gcggcttttt attcaacatt cttagagata ttatattttt tacctcattc atttcttcct
      181 cttcagggat tcttgcgtaa tttgaagtaa taaaactaag acaagaagtt agaatttcac
      241 aatagacaaa tccataaatg aaatcagttt cgttagtgta gctcaatcta ttttccttat
      301 tgcttagacg aatcatactt gcaacgacag gaatcatcgc tagttttctg tcgatcagtt
      361 gttcaatcag cgccttagta gttgtatcca aagacattac attttcggat tgcgtgcgtg
      421 gtcatttaaa gctatttgag gcaacacata cgaaataaat gacagtgaag atttaacccc
      481 gactttcatt tgcatacgtc agtatgattg taaatgaact tgacctacaa tcagcaatta
      541 aaattagtag gcgtggtcat catttttgtg ttttttgagg tcaggaaatt ttgaaaaagt
      601 cctttcacac ttttcacatt tccattggtg agctcttgcc tgattgaaag tttcaaaagt
      661 cctctcccca tttgtgtacc tgccggtttt atgatcatac atggatgggt tatagtggac
      721 tttgtacttt atcgaatttg gctgcaactc aactcaaggg aaaataagac tccgtgcctt
      781 atatattaat atgttactct actaaggatt atagagtaaa aaatgaccat agtatttatc
      841 ttgtatttgg gataccgcta tacttatagc acagagatta ggaaaaatac tattgttctc
      901 taaggtgtca gatattttgt catcgatcaa ggacggctca attctaaaat ttaaggacag
      961 agaaaaagcg gcacatactc tcgcctcagt tctgaaggat tctctaaaag gcgcttcaag
     1021 agaggaagta actgtcattg gaattccccg tgggggtgta ataatggccc aagtaattag
     1081 ccagaaaata gcagctcctt catttgacat agtcatttca cgaaaattgt ctgcaccgca
     1141 caatgtagaa ctagggatag gtgcgactat ggaagatagt acgctttact tgaatgatta
     1201 tgtagtaaat gcactgaagg taacccctga atatatagaa aaggagaaac aaaaacagat
     1261 taaagagatc aagcgacgag aatctttata cagaagcagt gccaaggggt atgaaattaa
     1321 aggaaggatt attgttcttg ttgatgacgg agctgcaacc ggtgctacct tggttgcagc
     1381 agcaagatgg ataaggaaac aagaacctaa gaaattgata atagcaattc ctgttgtccc
     1441 aagggaaact ctggaactat tgaagaaaga agcggatcat gtagaagcag tgattatccc
     1501 aatcacaacg aattttagat cggttggtca attctatgaa gatttttccc cagttagtga
     1561 tgaggatgta atgaagataa tgaaggatca gaaatgataa gatattccca gatattcatt
     1621 ttcttgctat tcacagcatc agtggaataa ctctaaccct attgaaagaa gaactatttt
     1681 gattttgacg tattttgagt atgctctagc catggtatca gaaagtagca tcaagtcaac
     1741 aagtcgtgtt ttgcttttgt tattctaatt ccaggcaata aacccacagt tcaaaaaaga
     1801 tctagattct atctgggtgt tattgacatt gcatgagcta gttgggataa tgcaggcact
     1861 gaatgtgaag caaattctag aataggtcca tgccatatac caaagccgac catgaatacc
     1921 attgcaaata ccaagacagc tatcatagat ctcggttcct taacgcggct catatctgga
     1981 ccttcctcca tgtacatctt ccgcataatc cacgcgtagt agccaagtga tagggcacta
     2041 ttaagtaccg ctgctatagc aaggtaaggt ccccaccaca ctgtttcgcc agtgtttata
     2101 gcggccccaa atattactag tttgctccaa aatccattta gaggaggtac tccggcaagt
     2161 gcaagtagag atattgaaaa cgcaattgcc gtaataggca tacgacgtcc aagtcctctg
     2221 tacctttcta aactgtaacc tgcaagggcc gtagctactg ccgcggctgc aatgaacgca
     2281 gcagacttca ttactgcatg attcattata tggaatagcg atcctgtaag agcctggtca
     2341 ctatacggtg caagggccaa tcctatcatt atgtaaccag cttgtgcgat acttgaatat
     2401 gcaagaattc ttggaacact tctttgtact agtgctccca gatttccgag cgtcatcgta
     2461 aagattgcaa tgatagcaag gatcatcgtc caatccaagt tgaggacaaa catccccaac
     2521 acaatgacac gaatggcagc agcaaagcca gctttctttg tacctgcagc aagtaacgct
     2581 ccaattgtgg tgggtgcacc ttcataagca tcagggagcc acatgtgaaa cggaacaaga
     2641 cccattttga aaccaaaacc tgccacaaaa agtgctatcg caaggagtcc aactggtgcc
     2701 aaattctgcg gcaaggtaac aaatgccata agggcaacac ctatgttagt acttccggta
     2761 attccatata cgagaccaat tgccaccaca agaattgctg atgaaagggc accaaatagg
     2821 aagtatttga tagctgcttc atttgagata ggatctcgtt ttgagaatgc tgcaagggca
     2881 tatgttggaa tcgacattaa ctcccacgag acaagcagca ttaccaagtc tgtagagtat
     2941 gcaatcaata tcatccctat gcttgacaga agtatcaatg aatagtat
//
LOCUS       DASSIK010000236         4854 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_741644, whole genome shotgun sequence.
ACCESSION   DASSIK010000236 DASSIK010000000
VERSION     DASSIK010000236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4854)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4854)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4854
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_741644"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..422
                     /locus_tag="VFI64_04440"
     CDS             <1..422
                     /locus_tag="VFI64_04440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="Hsp70 family protein"
                     /protein_id="HET7242571.1"
                     /translation="SKDELDRLKKESEQFADADKKKREEAELKNEADNLIYAAEKLVQ
                     QDLKDKIKPEQIEKANKSIQELKSAMSNNNIEEIKNKTQDLKNTIGEISAEAYRAASS
                     AQTTAEKPGGSSSSESSATSPQGNFGNHDTQNPSNTT"
     gene            466..1593
                     /gene="dnaJ"
                     /locus_tag="VFI64_04445"
     CDS             466..1593
                     /gene="dnaJ"
                     /locus_tag="VFI64_04445"
                     /EC_number="1.8.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF008035.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HET7242572.1"
                     /translation="MSSKRDYYDVLGIEKSSSKDEIKSKYRKLALQFHPDRNKDPSAE
                     GRFKEISEAYAVLSDDEKRKRYDRYGHVGTDEAFRGSEANFEEVFKDIGFGGFRDIFE
                     QFFGGGGGGFSSTGRGDPFGFGFNFGGRTRKGQDILYDLDVSLEEVVKGTREEIEVPV
                     VEKCHVCKGTGAAPGTKIKRCGTCDGQGQTRRVYSENRFSTFVTLETCRVCNGRGQVI
                     EKPCASCRASGKENATKKLFIDVPPGVDDGMTLQMSGGGLPAEGGQHGDLLVRIHVKP
                     HNLYERLEGGHLLYNLKVRYTDVVLGVEVQIPTLYGEEKLKIAQGTQLESLFRIKGKG
                     LPNYGNRSRGDLVVKLSIGIPSKLSERQKWLIEELQKSGNV"
     gene            1656..2240
                     /gene="hsp20"
                     /locus_tag="VFI64_04450"
     CDS             1656..2240
                     /gene="hsp20"
                     /locus_tag="VFI64_04450"
                     /inference="COORDINATES: protein motif:HMM:NF041800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaeal heat shock protein Hsp20"
                     /protein_id="HET7242573.1"
                     /translation="MSSPFDEWLGRRRPSSWFPDVDSMMRDMEKLMQEALKNMDQQVP
                     RNLVRERRLDDGSIVRETGPIVYGYSVKIGEDGKPVVRKFGNINSFPGPLGGTFSVSE
                     QREPLIDVIKDNERIKVIAELPGVNKEDLRITANETSLTIESISGERRYHKRIDLPEP
                     VDASTGKSTYKNGILEISFKLKNSTEHGVPIDVD"
     gene            2345..3280
                     /locus_tag="VFI64_04455"
     CDS             2345..3280
                     /locus_tag="VFI64_04455"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HET7242574.1"
                     /translation="MHAIKTENISKTYKNSPAIALSNISLEIQSKKIFTLLGRNGAGK
                     TTFVRVCATQLLPSSGAAEVLGFDLVREPEKIRNRISVVPQEGRPLRALTPWDHVYNW
                     LRIRGMDKNESRRRSEKVLHDFDLYRSKDIPAMNLSGGMKQKVLVAMSMAVEAELLFL
                     DEPTIGLDPISRRQVWKSIKEKKDEGKTVLLTTHYMDEAESLSDEIAIIDKGTVVQSG
                     TIRSLKDKIPQNIRIDISKDGADIEMLKSFGSVVDTGGSFMRIFTYESSIQELSRIAM
                     KKNLFFSVSPITLDDVFVYLVGSKNDEENRNDYEL"
     gene            3627..4268
                     /locus_tag="VFI64_04460"
     CDS             3627..4268
                     /locus_tag="VFI64_04460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242575.1"
                     /translation="MVSYHHAFLSNSNCRVHYFKEQYLSTVPNGIILHLNYILLVIGL
                     VMLFSGIVILAISSYFVPDPLHTVNARYNGKISQNQHSDIVLMDVQKKKNISLYILNE
                     PVDTALNAKIINPRNVLVVNQNFSNKFYINFIPTVDGNYTATITNLNRTSTSFDVLFA
                     SSVLFYNNGDPKIFEIYLIMIGVIMLVAGTGTAIVGSIMVILRKYKSKEYNYS"
     gene            complement(4398..>4854)
                     /locus_tag="VFI64_04465"
     CDS             complement(4398..>4854)
                     /locus_tag="VFI64_04465"
                     /inference="COORDINATES: protein motif:HMM:NF014674.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Glu-tRNA(Gln) amidotransferase GatDE subunit E"
                     /protein_id="HET7242576.1"
                     /translation="EEIASLTDISPSFVVSKLTEDFVNFERQGYDLNVLENDMIKDAF
                     VRLSRSQIAKESLPLIFEMILKKEASNIDNSIASLGIKQLSMNDLKAIVDKVIKDNEQ
                     IVRDKHNASLGLLMGRCMALLRGKVDGEKVNKMLRERLEFFLRESVKIN"
BASE COUNT         1594 a          858 c         1053 g         1349 t
ORIGIN      
        1 tttctaagga tgaactggat agactcaaga aagaatcaga acagtttgca gatgccgaca
       61 agaagaagcg ggaagaagct gaactcaaga atgaagcgga caatctcatt tatgcagctg
      121 agaagttagt tcaacaagat ttgaaggata aaataaagcc cgagcaaatt gaaaaagcaa
      181 ataaatctat tcaggaactg aagtctgcaa tgtccaataa caacatcgag gagattaaaa
      241 ataaaacgca agatctgaag aatactatag gcgaaattag tgctgaagca tacagggcag
      301 caagttcagc gcagaccacc gctgaaaagc ccggaggttc atcaagttct gagtcttcag
      361 ctaccagtcc ccaaggaaat tttggaaacc atgacactca aaatccatcg aatacaacgt
      421 aattttgatc acaagggcat tcagggaatt ccgtgataag gactaatgag tagtaaacgt
      481 gactattatg acgttctagg gattgaaaaa agctcaagta aagatgaaat aaagagcaag
      541 tatagaaagc tagcacttca attccaccct gatcggaata aagatccttc agcagagggg
      601 agatttaagg agatatccga agcttatgcg gtgctatctg atgacgagaa acgcaaaagg
      661 tacgacagat atggtcacgt aggaacagac gaagcattcc gtggctccga agcaaatttt
      721 gaagaggtat tcaaagatat tggatttggg ggtttcagag acatctttga gcaattcttt
      781 ggcggtggcg gaggcggttt ttcctctacg gggagaggag atccctttgg ttttggattc
      841 aacttcgggg gaaggacaag aaagggccaa gatatactat atgatctaga tgtatctctt
      901 gaagaggtag taaaaggaac aagagaagag atcgaagttc ccgtggtgga aaaatgccat
      961 gtttgcaaag gaactggtgc tgccccaggg accaaaatca aaagatgtgg aacatgcgat
     1021 ggccaaggcc aaaccagaag agtatacagc gaaaacagat tttcaacatt tgtcacccta
     1081 gaaacatgca gagtgtgtaa tggacgagga caggtcatag aaaaaccatg tgcatcctgt
     1141 agagcttcag gaaaagaaaa tgcgacaaag aaactgttca ttgatgtccc tccaggagtt
     1201 gatgatggaa tgacgttaca gatgagtggt ggaggactgc cagcagaagg cggccagcat
     1261 ggggacttgc ttgtgcgtat tcacgtcaaa ccacataacc tttatgaaag attagaaggt
     1321 gggcatttgc tctacaacct taaggtcaga tacacagacg tcgtcctcgg cgttgaagtt
     1381 caaataccta cattgtacgg ggaagagaaa ctgaagattg cccaaggaac tcaactggaa
     1441 tcattattta ggatcaaagg aaaaggtctt ccaaactacg ggaatcgttc tagaggcgat
     1501 ttggtcgtga aattatcaat tgggatccct tcgaaacttt ctgaaagaca gaaatggctg
     1561 atagaagaat tgcaaaaatc agggaatgta tgatatttcg cacacgagaa agattattat
     1621 tctgtatacg tgaagagcga tgtgaataat aatctatgtc atcaccattt gatgaatggt
     1681 tgggccgaag acggccaagt tcttggtttc ctgacgtcga cagtatgatg agggatatgg
     1741 aaaaattaat gcaagaggca ctaaaaaata tggaccaaca agttccaaga aaccttgtaa
     1801 gggaaagaag gcttgatgac ggatcaatcg tcagagaaac tggtcctatt gtgtatggat
     1861 attcagtgaa gataggagag gatggaaaac ccgtagtaag gaaattcgga aatattaatt
     1921 cgtttcctgg ccctttggga ggaacgtttt cagtcagtga acaacgtgaa cctttaattg
     1981 atgtaataaa agataacgaa cggatcaagg ttatcgctga actgccaggg gttaacaagg
     2041 aagaccttcg aataacagct aacgaaacat cgctaactat tgaatcaatt tctggagaaa
     2101 gaagatatca caagcggatc gatctccctg aaccagtaga tgcgtctaca ggcaaatcta
     2161 catacaagaa tggaatcctt gagatttctt tcaagcttaa gaattctacg gaacatggcg
     2221 ttcctataga tgtcgactga ccgctctact attatccttc aaaaccttac acccttagtt
     2281 gtatttaaac atgaggtcag agtaaaattt cccggcaagt agatgcgtta ctggtcaaca
     2341 gataatgcac gcaatcaaga ctgaaaacat ttccaagaca tacaaaaact cacctgcaat
     2401 tgctctgagc aacatctcct tagaaataca atctaaaaag atttttacac ttcttggaag
     2461 aaatggggcg ggtaagacaa cttttgtgag agtttgtgca actcagctct tgccgtcttc
     2521 aggcgctgca gaggttcttg gatttgacct tgtaagggaa ccagagaaga tcaggaaccg
     2581 tatttcagta gtaccccaag aaggtagacc attaagggca ctgactcctt gggaccatgt
     2641 ttataattgg ttaaggatta ggggcatgga taaaaatgaa tcgaggagac gctcagaaaa
     2701 ggtgctccat gatttcgacc tttatagatc aaaggatata ccagctatga atttatcagg
     2761 tggaatgaaa cagaaggtat tagtggccat gtcaatggct gtagaagccg aattgctttt
     2821 tcttgatgaa ccaactattg gcctagaccc aatatcaagg cggcaggtct ggaagtcaat
     2881 taaggagaag aaggatgaag ggaagacagt gctcttaaca actcattaca tggatgaggc
     2941 ggaatccctc tccgatgaaa ttgcgattat agataaagga acagtagttc aaagtggtac
     3001 aataagaagt ctcaaggaca agatccctca aaacatacga atagacatct caaaggacgg
     3061 tgctgacatt gaaatgttaa aatcctttgg atccgttgtt gatactggtg ggagttttat
     3121 gaggatattc acatatgaat caagtatcca agaattgtct cgtattgcca tgaagaagaa
     3181 tctttttttt agtgtttccc ctatcacatt ggatgatgtg tttgtttatc tggttggatc
     3241 taagaatgat gaggagaatc gtaatgacta tgaattatga atgcagattg tcttgggatc
     3301 aaaaagcaac ttactcccac tagtagattt tctcgttcaa tatgttcttt ctagtttttg
     3361 gtttgccttg ctgtttaaaa tggacgagga aatgaattga atacttacgt gtatcttaga
     3421 aggaaaatgc aggcaatcct ttctcatacg tgtggaaacg agaagtgaca cggaaactca
     3481 gaatgcatag tccaatttta tcactcagga agttgtcgga tgtcggatga ggatttcaca
     3541 gaccagaatt ttgactacga actgacatgc attattatat aatgtattat cgacattccc
     3601 gtctaaaaat tagatttaat tttcttatgg tatcatatca tcacgctttc ttatccaatt
     3661 caaactgccg ggttcattac ttcaaagagc aatacttatc aactgttcca aatggaatca
     3721 tactgcactt gaattacatt ttattagtaa ttggccttgt tatgctcttc agcgggattg
     3781 ttattcttgc gatctcttca tattttgtgc ctgaccctct acacactgta aatgccagat
     3841 ataatggaaa aatctcccaa aatcaacata gcgatattgt acttatggat gttcagaaga
     3901 agaagaatat ttcgctctat atcttgaatg aacctgtgga cactgcactg aatgcaaaaa
     3961 taataaatcc gcgcaacgtt cttgtggtca atcaaaattt ttcaaataaa ttttatatta
     4021 attttattcc aacagttgat ggaaattaca cagcaaccat tacaaacttg aatagaacgt
     4081 caactagttt tgacgtttta tttgcgagta gcgttctctt ttataataat ggagacccaa
     4141 aaatttttga aatctatttg atcatgatag gggtaattat gcttgttgct ggcacaggaa
     4201 cagcaattgt agggtcaatc atggtaatac taaggaaata caagtcaaaa gaatataatt
     4261 attcgtagtt ttgttgaata gtgaaaccag gataatctaa cgaatgcgcc attgaccatt
     4321 tactgcgtgc catcgcattt atgaaaaaat tatttaagtc aatcacgccg ctggagtcgg
     4381 atgtgttaat gaatgattca atttattttt actgactccc ttaggaaaaa ttctaatcgt
     4441 tctcttaaca tcttgtttac tttttcacca tctactttac ctcttaaaag agccatgcat
     4501 cgccccatta gaagtcctag ggatgcatta tgtttgtctc taacaatttg ctcgttgtct
     4561 tttataactt tgtcaactat cgctttcaaa tcattcatgc ttagctgttt gatgcccaat
     4621 gaggcgatgg agttgtctat atttgatgct tcttttttca agatcatttc gaatattaat
     4681 ggtaatgatt cttttgcaat ttgagaccga ctcaatctaa caaatgcgtc tttgatcata
     4741 tcattttcta gtacatttag atcgtaaccc tgtctttcaa aattaacgaa gtcttctgtt
     4801 aattttgaga ctacaaaact aggcgagatg tcagtaaggg aggctatctc ctca
//
LOCUS       DASSIK010000237         2798 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1232448, whole genome shotgun sequence.
ACCESSION   DASSIK010000237 DASSIK010000000
VERSION     DASSIK010000237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2798)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2798)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2798
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1232448"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            125..898
                     /locus_tag="VFI64_04470"
     CDS             125..898
                     /locus_tag="VFI64_04470"
                     /inference="COORDINATES: protein motif:HMM:NF013213.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HET7242577.1"
                     /translation="MDPLFYDSHIHLVDEYYANFLTQILTSMRELRIKACSVTMDIST
                     SRRAIDLFRDANRDVVYNFVGIHPKFAQIEEFSEFEDLVAQNRNLIDGIGEIGLDHSY
                     DTSKNYIYSKQLDIFKKMLNIAEEIERPVSIHSRGTLDEILDLIPSYDHLVVCLHWFD
                     GTEKQLQRSMDMGLYVSYGPLIAYSRHKKKLLSLADRNKILIETDGPVRYSGCFKNVT
                     SLPTNMLITILNIMSHELKMTFEEAMCIVSTNSHMFFNG"
     gene            991..1230
                     /locus_tag="VFI64_04475"
     CDS             991..1230
                     /locus_tag="VFI64_04475"
                     /inference="COORDINATES: protein motif:HMM:NF013029.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242578.1"
                     /translation="MHRVRRIATDLMNKYPDRFGTNFEQNKKTIVELAIVRSKELRNQ
                     VAGYIASHLNKQSKSSEENLESQGEPPDSLSSEAE"
     gene            1246..1500
                     /locus_tag="VFI64_04480"
     CDS             1246..1500
                     /locus_tag="VFI64_04480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242579.1"
                     /translation="MIIVKLLGSIQKTVNTNTLYIDEPNASISYIMSYLRNHAIEPDL
                     IDEKNFLIAINGIESSLFPKGESVIKSGDTVTVASLVHGG"
     gene            1536..2114
                     /gene="cgi121"
                     /locus_tag="VFI64_04485"
     CDS             1536..2114
                     /gene="cgi121"
                     /locus_tag="VFI64_04485"
                     /inference="COORDINATES: protein motif:HMM:NF011465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KEOPS complex subunit Cgi121"
                     /protein_id="HET7242580.1"
                     /translation="MNNKKGPTLLENNIPPEDRSLYRIDTYYVAIIEITHLGSENLHE
                     LITKFRAFSPDVLVQGMDASYVFGVNHLLRVLQLTVESWNRGIKLSKIMETDILMRLC
                     RTSQISKAIKIGGLKNDSAACFILMSENLDSVLKIKQYIEGYYNEIHVSVLRIGKNKM
                     ARLRSEFGITHKKMDRIFFENYLVEKAALVKF"
     gene            complement(2405..>2798)
                     /locus_tag="VFI64_04490"
     CDS             complement(2405..>2798)
                     /locus_tag="VFI64_04490"
                     /inference="COORDINATES: protein motif:HMM:NF014923.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="THUMP domain-containing protein"
                     /protein_id="HET7242581.1"
                     /translation="TETDPLEVIDLFKKMATEEPWHFRYILRVIPVQIVCSTNLTEII
                     DSSCKLFRKVSRVSSFKIVVEKRHCNIRSREIVLAIAGRITNKVDLYYPDWIILVEIL
                     GKRTGISVLRSEHLLSIVKQKMGGHISK"
BASE COUNT          956 a          456 c          519 g          867 t
ORIGIN      
        1 agatattcgg gttaatacga gtgaattggg tgtctaagga taagaggagg atagaaatag
       61 tgtcgatgtc gagagaagat ttgatataga attattagga tatctgaagt aggaattata
      121 atttttggat cctttgttct atgattcgca tatacacctg gtggatgaat attatgcgaa
      181 ttttttaaca caaattctta catcaatgag ggaattgcgt atcaaagcat gttcagtgac
      241 catggacata tcaacatcaa ggagagccat agacttgttt agggatgcaa atcgagatgt
      301 agtatataat tttgtaggga ttcaccctaa atttgcccaa atcgaagagt tttctgaatt
      361 tgaagacctc gtcgcgcaaa atcgaaactt gatcgatgga attggagaaa ttggacttga
      421 tcactcgtat gacacatcta aaaactacat ttactcaaaa caactggata tttttaagaa
      481 aatgttgaac atagccgagg aaattgaaag acctgtttct atacactcta gaggaacatt
      541 ggatgaaatt cttgatctca ttccgtcgta cgatcacctc gttgtatgtc tccactggtt
      601 tgatgggaca gagaagcagt tacaaagatc aatggatatg ggtctatatg tctcatacgg
      661 tccgctcatc gcttactctc gacacaagaa aaaacttctt agtctagctg atagaaataa
      721 gatattgatt gaaacagacg ggcctgtaag atattctggc tgcttcaaaa atgttacatc
      781 attgccaaca aatatgctca tcactatact aaatattatg tctcatgagc ttaaaatgac
      841 ttttgaagaa gctatgtgca tagtatcaac aaattctcac atgttcttca atggatgata
      901 ggatgtattt attacctcaa aattagaatt tgccttggaa ctttcctgaa tgaataagta
      961 taaaataagc ttgtgttctc gttaatgtct atgcatcgtg tgagaaggat tgccacagac
     1021 cttatgaata aatatcctga taggtttgga accaattttg aacagaataa aaagactatt
     1081 gtggagcttg cgatagtaag atctaaagaa ttaagaaatc aggtcgcagg atatatcgcc
     1141 tcacatctta acaagcaatc caaatcaagt gaggaaaatt tggaatcaca aggagagccg
     1201 ccagactcct tatcttcgga agcagaatga caacttgaaa ctacattgat aatagtgaaa
     1261 cttctcggtt caatccagaa aactgtgaat acgaatacac tttatattga tgagcctaac
     1321 gcatcgattt catacataat gtcctattta cgcaaccatg caattgagcc agatcttatt
     1381 gatgaaaaga attttttgat agctatcaat ggaatcgaat cgtctttgtt tccaaaggga
     1441 gaatcagtaa taaaatcagg tgataccgtc actgttgcta gtttagtaca tggtggatag
     1501 taaaatgact aaatttgagt ataaaagata ttaatttgaa taataagaaa ggacctactt
     1561 tgttagaaaa taatatccct ccagaagacc gatctttata tcgaatagac acctattatg
     1621 ttgcaattat cgaaataacg catcttggaa gtgaaaattt acacgaatta attaccaaat
     1681 tcagagcgtt ttctcccgat gtcttagttc aaggcatgga tgccagttat gtatttggag
     1741 taaatcatct gttaagggta ctacaattga cggttgaatc gtggaatcga ggaataaagt
     1801 tatcaaaaat aatggaaacg gatatcctaa tgagattgtg tcgtactagt caaatttcaa
     1861 aggctataaa aattggagga ttaaaaaacg atagtgcagc atgcttcatt ttgatgtcag
     1921 aaaatttgga ttctgtcctg aagataaaac aatacattga aggttactat aacgagatac
     1981 atgtttcagt cttaagaata ggaaagaaca aaatggcaag attacgtagt gaatttggga
     2041 ttacccataa aaaaatggac aggatatttt ttgaaaatta cctcgtagaa aaagcagctc
     2101 tggtaaagtt ttaatctaaa taatcaccat aaatttcaat tatttttatt taattggtac
     2161 tgggcacctc ggtgctgatt ttagcaattt gcaaaagatt agtgcgacat ctcgtttcga
     2221 ttcaattata ttttgacgtt tcatgtgttg agtcggctga tttcaaagtg ctggaactat
     2281 taatagatga gcaaaactaa aatgctataa tcataaaact ttggcataca gattgggaac
     2341 taagcacttt ggtttgaatt ataaccctac taacaataca acttaaataa atctccattg
     2401 aatgtcattt acttatgtgt ccacccatct tttgctttac aatgctcaat aggtgttcag
     2461 atctcaaaac tgatatacct gtccttttcc ccaaaatctc tacaagtata atccaatcag
     2521 gataatacaa atccactttg tttgttattc tgcctgcgat ggccaaaact atttctcgag
     2581 atctgatgtt acagtgtcgc ttttcaacca caattttgaa tgatgatact ctagacacct
     2641 tcctaaataa cttacaagag ctatctataa tttctgtcag gttagtagaa caaacgattt
     2701 gtactggaat aactctaaga atatacctga agtgccacgg ttcttcagtg gccatttttt
     2761 tgaagagatc aatgacctct aaaggatcgg tttcagta
//
LOCUS       DASSIK010000238         3176 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_52273, whole genome shotgun sequence.
ACCESSION   DASSIK010000238 DASSIK010000000
VERSION     DASSIK010000238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3176)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3176)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3176
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52273"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(150..1502)
                     /gene="egtB"
                     /locus_tag="VFI64_04495"
     CDS             complement(150..1502)
                     /gene="egtB"
                     /locus_tag="VFI64_04495"
                     /inference="COORDINATES: protein motif:HMM:TIGR03440.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0052699 - ergothioneine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ergothioneine biosynthesis protein EgtB"
                     /protein_id="HET7242582.1"
                     /translation="MTQIISSDLEEIWSELQRVRETTLLIFEPLSVEDAVMQSDPFGS
                     PPNWHLAHVTWFFQKVLEKYGFKIQDVDNSTNTDYLNSYYQKFHNILPKTERGRYPRP
                     TVSQTLRYRKIVEDAFLDFFKIVKKNGTFNKKMKYDFLLANQHEMQHQELMIYDLQHY
                     FNRFPDPKDSYRPKIAKGLGTVGSADISTSMAKVPGGLYNLGFTGDGFCYDNELPEHK
                     TYLDPFEIDIHPVTNGDFIKFIDDGGYEDYHYWLADGWDLVKGKAWSSPLYWEKKEEG
                     HWCKKEFRGLSKINPKEPVVNVSYFEADAYAKWIGKRLPTEAEWEKAASWNDDLKRKT
                     KYPWGDESPTDSYANLLESWFWAPSPIGSFPNGKSYYGCYQMIGDVWEWTSSEYVLYP
                     RFRSVFPEYTDKWSIGHKVLRGGSFATPRNQVRNSYRNYFKPQERILFAGFRCIRDAT
                     "
     gene            complement(1592..2599)
                     /locus_tag="VFI64_04500"
     CDS             complement(1592..2599)
                     /locus_tag="VFI64_04500"
                     /EC_number="1.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004412 - homoserine dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HET7242583.1"
                     /translation="MILIGFGVVGQNFAQLILSRSTELYNSFGIKPRVVACADKGGVV
                     TSSEGLDLQRLLRTKRITNSVAHYDKNSRDRNILEVIQEAEAEVVIELTPTNIKDGEP
                     GRTHIISAMKAGKNVITVNKGPLALEFPSLIELAEYNRIAFRFSGTVGGGTPILEFAK
                     RCLKGDRILSFEGILNGTTNYILTQMGEGLTFPEALSDATTKGIAEKDPSLDIDGYDA
                     AAKLVITSNWVLGIKSTIRDVKRIGIKNLDLSDVKMATKNGAAIKLIASCDGENLKVA
                     PKQVSKRDPICVNGTLNAITFVSEHSGQQTIIGKGAGGMETASSVLRDLIEIRNTRSF
                     D"
     gene            complement(2894..>3176)
                     /locus_tag="VFI64_04505"
     CDS             complement(2894..>3176)
                     /locus_tag="VFI64_04505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242584.1"
                     /translation="FSSTRYTKAYSINHVNYTAQAVALLAHVTTVNVLTAEPTIPAIS
                     APIMAWFTNFGRTIENQSAMPGKERYPMNPIPKPRSQNEKIANPLDILD"
BASE COUNT          911 a          658 c          567 g         1040 t
ORIGIN      
        1 agcttttttc ctttaagaaa ggggaccgaa ttcacactga aaactcttat aagttttcgt
       61 tggagggaat caataagctc gctattgcta gtggcctgcg agtgataaag aattacacag
      121 acagccaaaa tttctattgt ctaagtcttt taagtcgcgt ccctgataca acggaaaccg
      181 gcaaataaga ttctttcctg tggtttaaaa taatttctat aactgtttct gacttgattt
      241 cttggtgtag caaaactacc gccccttagt accttatgtc ctatagacca cttatctgta
      301 tattctggaa atactgatct aaaacgtgga tacagcacgt attcagaaga tgtccattcc
      361 cacacatcgc cgatcatttg gtaacagcca taatagctct tgccatttgg aaatgatcct
      421 atcggcgacg gagcccagaa ccaggattca agaaggtttg cataactatc agtaggagat
      481 tcatcacccc aaggatattt tgtttttctt tttaaatcat cgttccaact tgcggccttt
      541 tcccattctg cttccgtagg gagcctctta ccaatccatt ttgcataagc atcagcttcg
      601 aagtagctaa catttacaac tggttctttt ggatttattt tggataggcc acgaaattct
      661 ttcttacacc aatgaccctc ctcttttttt tcccagtaga gcgggctact ccatgccttt
      721 cccttgacta aatcccagcc atccgccagc cagtaatgat aatcttcgta tcccccatca
      781 tcaatgaatt ttatgaagtc tccatttgtg acagggtgaa tgtcaatttc aaatggatcg
      841 agatacgtct tgtgttccgg aagctcgtta tcgtagcaaa acccatcacc tgtgaacccc
      901 agattgtata aacctcctgg tactttggcc atcgatgttg aaatatctgc ggaacctact
      961 gttcccaatc ctttagctat tttaggtcta tagctatctt taggatcggg aaacctattg
     1021 aagtagtgtt gtaaatcata aatcatcaat tcttgatgtt gcatctcatg ttggtttgcc
     1081 agtagaaaat cgtacttcat ttttttatta aaggttccat tttttttgac aattttaaaa
     1141 aaatccaaga aagcatcttc cactattttc ctatatcgta aggtttggga aacagtaggt
     1201 cttggatagc ggccccgttc tgttttgggg aggatattat gaaatttctg gtagtatgaa
     1261 ttaaggtagt cagtattagt agaattatcc acgtcctgaa ttttgaaacc atatttttca
     1321 agaacctttt gaaagaacca agtcacatgc gcaaggtgcc aatttggtgg gcttccaaac
     1381 gggtctgact gcatcactgc atcctctact gatagaggtt caaatattaa taaggtagtt
     1441 tcccttaccc tctgcaattc ggaccaaatt tcttctaaat cagaagaaat aatttgagtc
     1501 aatatgacta gtgactatca atcaacatta taaattaatt cccatcaaaa gtgtgtgtta
     1561 acacctctaa ttttctttag tataaataac atcaatcaaa tgacctagta ttgcgaattt
     1621 ctatcaaatc tctaagcacc gaactggctg tttccattcc acctgcaccc tttccgataa
     1681 ttgtttgttg acctgaatgt tcggagacga aagttatcgc atttaaagtt ccatttacac
     1741 aaataggatc tcttttcgaa acctgttttg gtgcgacttt aagattttca ccatcgcaac
     1801 tggctatcaa ttttattgct gcgccattct tcgttgccat ttttacatcc gacaagtcca
     1861 aatttttgat gcctattctc ttaacatccc taatagtaga cttaatacca agaacccaat
     1921 tggaggtaat tacgagcttg gcagctgcgt catatccatc aatatccagt gatggatctt
     1981 tctcagcaat cccctttgta gtggcatctg ataaggcttc tggaaatgtt agtccttcgc
     2041 ccatctgggt taggatatag ttcgtagttc cattcaatat cccttcaaaa gatagaatcc
     2101 tatcgccctt tagacatctt tttgcgaact ctaatattgg agtgccgcct ccaacagttc
     2161 cgctgaatcg aaaggcaatt ctattgtatt cggccaattc aattaaggaa ggaaattcaa
     2221 gggctaaggg acctttattc actgtgatta cattttttcc agctttcatc gcagatataa
     2281 tatgtgttct acctggttct ccatccttaa tattggtggg agttaactcg ataaccactt
     2341 ctgcctcggc ctcttgaatt acttcaagta tatttctgtc tcgggagttt ttgtcataat
     2401 gtgcaacaga atttgtaatt cttttggtgc ggagcaatcg ctgaaggtct aatccctcac
     2461 tcgaggtaac tactccacct ttgtcagcac atgcaactac acgaggtttt ataccgaatg
     2521 agttgtataa ttccgtagaa cgtgataaaa ttaattgtgc aaaattttga cctacaactc
     2581 cgaacccaat taaaatcaat ctcaagcaag cgtttatcag aattaacaag ttaatatgtt
     2641 taaaggtaac aagaatagca accgtagaaa tgtactattc ttatctagtc tatcatgcct
     2701 tttaatcatc gagattacgt tttgatgcct tgaaaaaatg cctaaaaagt ccgaacatct
     2761 ttagacatgt caaaccatca taccttaaaa tatacaattt ttgacattct tgtttaaaac
     2821 ggaatgatta gacaccgaaa ttatgtataa gcgtaagata atagattttt atgaaataac
     2881 ggtttgtcga ggtttagtct agaatgtcta gaggattagc gatcttttca ttttggcttc
     2941 ttggttttgg aattggattc atagggtacc tctccttacc aggcatagca gattggtttt
     3001 ctatagttct gccaaaattt gtaaaccagg ccataatagg agcactaata gctggaatgg
     3061 taggctctgc tgtgagtacg tttacagtgg tcacatgggc caacagagcc accgcttgag
     3121 cagtataatt cacatgattt attgaatacg ccttagtata acgggtagag gaaaat
//
LOCUS       DASSIK010000239         3957 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1138887, whole genome shotgun sequence.
ACCESSION   DASSIK010000239 DASSIK010000000
VERSION     DASSIK010000239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3957)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3957)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3957
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1138887"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            117..560
                     /locus_tag="VFI64_04510"
     CDS             117..560
                     /locus_tag="VFI64_04510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242585.1"
                     /translation="MVSILLTSLVFGQSSTILKNSQKLREFQSTTTGYVRYVKTLTSN
                     NPHGIAQLTDSYAAKIKSIFDRSPTLTFGCKTIDCINSPQSTNQLGTSGNLLQDPKTK
                     FHEFRMLTLQFQKDVTLATGPSNPSHIIGQLVDIYSKNVKDIFNY"
     gene            complement(736..1191)
                     /locus_tag="VFI64_04515"
     CDS             complement(736..1191)
                     /locus_tag="VFI64_04515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242586.1"
                     /translation="MVKTIKVNGQALGSSSTPYPELTNNGIECDVVEHLTFHTHTNLT
                     MIVDEKQQKIPAGIGIIPAKCIYWLHTHDDSGLIHMESPINQSFTLGQFFEIWDRFDS
                     TNSTLLDDILAGNFTGHVDIFVNGKNQSDLDYGDIQLKDKDQITLHFSN"
     gene            1245..1613
                     /locus_tag="VFI64_04520"
     CDS             1245..1613
                     /locus_tag="VFI64_04520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242587.1"
                     /translation="MNDVEVSKTYALASFALSLYNCCLLNLGHISEGAILSNMQTCSV
                     PSSGFFPQLISASPLDIIVIFSLTSNASLFGAGLLEMTFGPEYLVYALDYDEPLFAKG
                     KWSAKRHLFGKKIVLNYEDN"
     gene            1709..2395
                     /locus_tag="VFI64_04525"
     CDS             1709..2395
                     /locus_tag="VFI64_04525"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HET7242588.1"
                     /translation="MNPEDDPEYWNSMGYSLALNGKRDKAQKYYEKTLEIDPDNVAAL
                     NNLANILLDQGKEDEALKYLKYTTQMHPDYAEAWINLGLINEEANKVDEAMKCYDMAK
                     DLDPGSAALWHNRGYALRRLNKFREAIADYDTSLRLRPLHISTLMDKAFAHMSISEVD
                     EADICYDEVLKMEPNHAEALGDKGTVQFARGNYREALLFFDKSLKMEPNNAKLLNYRR
                     IASEKIAENN"
     gene            3222..3554
                     /locus_tag="VFI64_04530"
     CDS             3222..3554
                     /locus_tag="VFI64_04530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242589.1"
                     /translation="MDFDPDYYGSDSSVFSNIKGKKLALLVGLFCIGAFLVVQAMFGF
                     PIKDLFRADVSDEETVIIKNDLQKTCVVEGPEHQPRVITECSYEKGDKIVVSYKQGTS
                     SISSHHLK"
     gene            complement(3650..>3957)
                     /locus_tag="VFI64_04535"
     CDS             complement(3650..>3957)
                     /locus_tag="VFI64_04535"
                     /inference="COORDINATES: protein motif:HMM:NF026214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alkyl sulfatase C-terminal domain-containing
                     protein"
                     /protein_id="HET7242590.1"
                     /translation="KSQNTTATLGIYLNDTKEGYTLEIRRAVLEYKDSFPTKYDIALY
                     TNSDILKEILLGQSNLQKAVDLGIAKSVGGNVSDLNNIASLFEYKLKAPIHRIQGVN"
BASE COUNT         1251 a          711 c          718 g         1277 t
ORIGIN      
        1 tatgaaaatt tattccttcg gatcattgaa ggatattatt ggctatttgt ttacaaaaca
       61 ctgggaaaag atatttcctt agtatggtgt tattgacaat tattatgatg tcggcaatgg
      121 tttctatttt attaactagt cttgttttcg gacagtcttc tacaatcttg aaaaattctc
      181 aaaaactgag agaattccag tcaacaacaa ctggatatgt aaggtacgta aaaacattaa
      241 cgagtaataa tccacatggc atcgctcaac taactgattc ttacgctgca aaaataaagt
      301 caatatttga ccgatcacct actttaacct tcggttgtaa gacaatcgat tgtatcaatt
      361 caccacaatc tacgaatcaa ttgggaactt ctggtaatct cttgcaagat cccaaaacta
      421 aatttcatga attcaggatg cttactttgc aatttcaaaa agacgttact cttgcgactg
      481 gtccttccaa tccttcacat atcattggac agctcgtaga tatctattcc aagaacgtta
      541 aagacatatt caactactaa cttgaaatga cctgcaaaaa taatcactta atgaataaac
      601 gtatactact agctatcagc aatcccagaa gaataagcat tagaaatttt gttccgattt
      661 aacttcttaa ccaatagtta ttccttgttt gcggtaagtc tttgccttgc tatggtatat
      721 taatttgtgt tggaactaat tactaaaatg caaggtaatc tgatctttat ctttcaattg
      781 tatatctccg taatcaagat cactttgatt cttgccgttg acaaatatat caacatggcc
      841 agtgaaattc ccggctaaaa tgtcatctag caaagtggaa ttggtactat caaatctatc
      901 ccatatctca aagaattgcc ctaacgtaaa actttgattt atcggggatt ccatatgtat
      961 tagaccactg tcatcatgcg tatgtagcca gtaaatacat tttgctggaa tgatccctat
     1021 gccggccgga atcttttgtt gcttctcatc aacgatcatc gtaaggttag tatgagtatg
     1081 aaatgtgaga tgttcaacta catcacattc tattccatta ttggtgagtt ctggataagg
     1141 tgtagaagat gaacctaaag cctgaccgtt tactttaatt gttttgacca tactactgcc
     1201 agttatgaca atgaccatca aaatgagaag cagactgata tatcttgaat gatgtggaag
     1261 tatcgaaaac ctatgccctt gcatcatttg cattgagtct gtataattgt tgtttattaa
     1321 atcttggtca tattagtgag ggagccatct taagcaacat gcagacttgt tccgttccat
     1381 catcgggctt ttttcctcaa ttaatttctg caagtccgtt agacattatt gtaatattct
     1441 ctttaacgtc aaacgcatcc ttatttggcg ctggattatt ggagatgact tttggccctg
     1501 aatatttagt ctatgctctg gactatgatg aacctttgtt tgcgaaaggc aaatggtccg
     1561 ccaaacggca cctttttggc aaaaagatag tattaaatta cgaggacaat tagtgaatat
     1621 ttaaaagtaa aaaaatatag tttaggctca gccattattt tagagcggct atgcttaaat
     1681 gaaactagtt tagacgaaag gtaaagtatt gaatcctgag gatgaccccg aatattggaa
     1741 tagtatgggt tattcacttg cgctgaacgg aaagagagat aaggcacaga aatattatga
     1801 aaaaactctc gaaatcgatc cagacaatgt ggccgctctt aacaaccttg cgaacatttt
     1861 attagatcaa gggaaggaag acgaggcttt gaaatatctg aaatatacta cacagatgca
     1921 tcctgactat gcggaagcat ggatcaacct tggtctaata aacgaggaag caaacaaggt
     1981 agacgaagcc atgaaatgtt atgacatggc gaaggatcta gatcctggga gcgctgcctt
     2041 atggcacaat agaggatatg cactcagacg actaaacaag tttagagaag caatagcaga
     2101 ttatgacaca tcactaagac ttcgtccgct tcatatcagt actctaatgg acaaggcctt
     2161 cgctcatatg agtatttcag aagtggatga ggctgatata tgctatgatg aagtcttgaa
     2221 aatggagcca aaccatgcag aagccttagg agacaaaggt accgtacaat ttgcaagggg
     2281 aaattacagg gaagccttgc tattttttga taagtcttta aaaatggagc caaacaatgc
     2341 aaagctattg aattacagac gcattgcgtc tgaaaaaata gcagagaata actaaaaata
     2401 tgatttaggt gtaattcagg cttatgtctt atattgtatg gaattgataa attgaatgac
     2461 cggagtctat atgattcatt ttgatctcca ttattcatta acaattttca caaatagttc
     2521 cattgtgtaa cacgttttaa gggacgctcg ggcagacaat gggactggtt tgcggtatag
     2581 atcgcttgct cttctcgact attgcttgag tttgtaaaga agctccctct ttttacaatg
     2641 ttatattgtg cttttagcaa attcacaagg aatgagctga cttttcagga gtatattggt
     2701 aatagaagta atattcatgg gaaataaact tgatactttc aatttcgatt gacaacgcat
     2761 ctagatcttg ctcatcgaga gcttgcgcaa tgctgttcct agttgaaaga ttatattctc
     2821 aaactcttca atatcaatgt tagattattg aaggaattga tccaataccc ataaatgact
     2881 ttatacatcc tattagtgta ttagcctcca atactgcgga cattaatatt tttgaagaca
     2941 tgggagtatg caaattcaaa ccatagctgc tgggtcaata atcctaacac attccccaac
     3001 tcaccagttt aattacatca gtttttcttt ccgaatttcc aacattttta tctcaatctt
     3061 tttctagttc acaattctca tttctaaact ggtgtagggt tcttagtttc tccatgtcag
     3121 agattcccaa aattcatact tcttaaggga agaagggtag cgacaaaaaa tattatccaa
     3181 tagactcata ttcaatttcc attctctaag tactgacaaa tttggatttc gatccggact
     3241 actatggttc tgattcctcc gtgttttcaa atattaaagg caaaaaactt gctctacttg
     3301 taggtctatt ttgtattggt gcatttttag ttgttcaggc aatgtttgga tttcctatca
     3361 aagatttgtt cagagctgat gtaagtgacg aggagacggt aatcataaaa aatgaccttc
     3421 agaaaacatg tgtagtagag gggcctgaac atcaacctcg tgtcataaca gagtgttcat
     3481 atgaaaaagg cgacaagata gttgtgagtt acaagcaagg aacatcatca atatcaagtc
     3541 atcacttaaa gtagaactca ttaactacca atttacaaat ctgtcttata ttacgtttat
     3601 gccagaaaag gcctaattta actatcagcg tagtccaata cgcttcagtc taattcacgc
     3661 cctgaattct atgaattggt gctttgagct tgtattcaaa aagacttgca atattattta
     3721 agtcactcac gtttccgcca acacttttag caattcctaa atctactgct ttttgtaagt
     3781 ttgattgtcc tagcaggatc tcctttagta tatctgaatt tgtgtagagt gcgatatcgt
     3841 atttagttgg aaatgaatct ttgtattcta agacggcacg ccgtatttct agtgtatatc
     3901 cttctttagt atcatttaaa tagatcccaa gagttgccgt tgtattttga cttttta
//
LOCUS       DASSIK010000240         2036 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_639352, whole genome shotgun sequence.
ACCESSION   DASSIK010000240 DASSIK010000000
VERSION     DASSIK010000240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2036)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2036)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2036
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_639352"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            378..1592
                     /locus_tag="VFI64_04540"
     CDS             378..1592
                     /locus_tag="VFI64_04540"
                     /inference="COORDINATES: protein motif:HMM:NF012428.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HET7242591.1"
                     /translation="MITSVGPRATKIINDIKNTSYSSTYTYPLVIKTGKGCILQDIDG
                     NNFLDFTSNIGSCPLGYSHPEIMAVLKEYSSNGSHKIAGQDFYCEEHAQIAHKLLSVS
                     RRSSKLFLINSGAEAVENAIKIAYKKMGSLPGISCINAFHGRTLGALSFTFSKEIQKA
                     NFPELPVKRIKFCTSDTDAEIDSLEDLLKQYKVAFIISEVIQGEGGLNIAGKKFLRNL
                     KKKARQYNVPLIIDEVQSGMGRTGRWWAYQHYGIEPDIMTVAKGLQVGAVVYDKLFDP
                     DEPGVLSSTWGAGSRIDMAVGCKIIETIESQGLLRNAQKQGENLLKGLGELVGSGDVI
                     DVRGIGLMIGIELNQKSTRDRIVRILFKNGLLVLPAGKSSIRIMPPIIITGDEIDNGL
                     SILHDAFGRRIK"
BASE COUNT          684 a          328 c          432 g          592 t
ORIGIN      
        1 atctcaagat tacaggatca gttgaaacaa gggtgtaaca tgaaattaag agaagatttt
       61 atgaaataat taaatccttg taagtaggtg ataaaattag tatgacaaat gttgaaggtc
      121 gtcaattatc acttaaacta tatctgtaat ggttcgactc ttctctgaac tggcatcaag
      181 ggtgattttt tatgtaccat caaacacgca tgatgggatc aaatcatttt agaagaagcc
      241 gttatagaaa ctccacctcg tgaaacttgc atcaacttgt ctcctgttga tcaaaacgga
      301 acagtatgca aaaacattgt tttagaaaag agacaagaat cttctaatat gcttgacaca
      361 tttcgttaag gagtcttatg attacttccg tcggtccacg ggcaaccaag atcattaatg
      421 atataaaaaa cacttcttac tcctctactt acacttatcc acttgtaatc aaaactggaa
      481 aaggatgcat attgcaagat atcgatggca acaattttct tgattttaca tctaacattg
      541 gatcatgccc tttaggatat tctcacccag aaattatggc agttctaaaa gaatattcta
      601 gcaacggctc ccacaaaatt gctggacaag atttttattg tgaagagcat gctcaaattg
      661 cccacaagct tctttccgtg tctcgtagaa gtagtaaact gtttctcata aatagtggtg
      721 cagaagcagt cgaaaatgca ataaaaatag cctataaaaa gatgggctcc ctaccaggta
      781 tttcttgtat taacgccttc catggcagga cacttggagc ccttagtttt acattcagta
      841 aagagataca gaaggctaac tttccagaat taccagtgaa gagaatcaag ttttgcactt
      901 cagatacaga tgcagaaatt gattctctag aggatttact aaaacagtac aaggtggcgt
      961 tcattataag cgaagttatt caaggtgagg gtggtttaaa tatcgcaggt aagaaatttc
     1021 tacgcaatct aaagaagaag gccagacagt ataatgttcc tctgattatt gacgaggttc
     1081 aatctggaat gggcagaaca ggcagatggt gggcatatca acattatgga attgagcctg
     1141 atattatgac agtagccaaa ggattgcaag tgggagcggt tgtttatgac aaattgtttg
     1201 atccagatga gccaggagtg ctttccagca cttggggagc tggaagcaga attgatatgg
     1261 cagtaggatg caaaattata gagacgatcg aatcgcaagg tcttcttaga aatgcgcaaa
     1321 aacaaggtga aaatttgttg aagggattgg gcgaattggt aggaagcggc gatgttattg
     1381 acgttagagg cattggatta atgatcggta tcgaattgaa tcaaaaaagc acaagggata
     1441 gaatagtaag gatcctgttc aagaatggtc ttctagtttt gcctgcaggc aagagctcaa
     1501 ttagaataat gccaccaata attatcacag gggatgaaat agataatggg ttgtcgattc
     1561 tgcatgatgc atttggtaga agaataaaat aacggtacct catttggatt cataaaatga
     1621 ctagtggcta aaataagtat accttcgaat tttacgtatg gtcatcactg ttggtgattg
     1681 aatctgtctt gtgtttttta ctgtagaggc ctggtcaaaa taagcacata ctaagggtag
     1741 tactttaatc ctgtgaacac attaggtttg atctccgggc aaaattaata attggcactt
     1801 cataagaata tcttagaaac ctgggcaagg gaggaagata caaattctct tcgacaccaa
     1861 agaaaaaatt tacttttcaa tatatatttt ggaagaaaag atacttcaga ttctattagt
     1921 cacataggct ggtcatactc cgagttgcta gagaatgact agattagagc attttcatag
     1981 tcagaaaggc attaattatg gatgatattt cgattaggtt atggaaggtc ttcaaa
//
LOCUS       DASSIK010000241         3671 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1350996, whole genome shotgun sequence.
ACCESSION   DASSIK010000241 DASSIK010000000
VERSION     DASSIK010000241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3671)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3671)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3671
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1350996"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(226..1134)
                     /locus_tag="VFI64_04545"
     CDS             complement(226..1134)
                     /locus_tag="VFI64_04545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242592.1"
                     /translation="MKRDIVKNSLIAQDVFSVLADRYSSNIFRAVYSGLKASSTNYIG
                     GLSKKQFYTRLKNLVLLGLIEKRDSFYRTTTFGSLIYNSQIKTMDGVVDSYWKLKSVD
                     VLGRREDFPSEQKDTIVAEILKSTGNYKTITGNHLTGIEIVKNFGNLVNKVLKLLENA
                     KKEVYFATRYHQPDVSNKTFETFGRGVGIHILDGNPEQISLENRLNAIIRTPPNRQTL
                     DLINQIVRSPRFDLMRLPNLPISFMVVDGIHVIYETANYSNPEQFTTALAIYNDEVEA
                     QRFIGYFGSLTKNAHIPKLLQLARPT"
     gene            complement(2515..3132)
                     /locus_tag="VFI64_04550"
     CDS             complement(2515..3132)
                     /locus_tag="VFI64_04550"
                     /inference="COORDINATES: protein motif:HMM:NF021996.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DM13 domain-containing protein"
                     /protein_id="HET7242593.1"
                     /translation="MNTRTKIIIGIMTAIIVITFAIYTISPLLINTVINEPLPSSSVS
                     SDFQRFMNMTEDEKIEAANNMTQKQKEIIMTVAAKDNNTVSENLSVATMSASSNETLI
                     GNFVGAGDEFHNAEGVAKIIQLADGTDILRLENFKATNGPDLYVYLSTDKTNADIVNL
                     GRLKGNIGNQNYLIPAGTDITKYNTALIWCRAFSVIFGSAQLLTK"
     gene            complement(3371..>3671)
                     /locus_tag="VFI64_04555"
     CDS             complement(3371..>3671)
                     /locus_tag="VFI64_04555"
                     /inference="COORDINATES: protein motif:HMM:NF016300.4"
                     /note="The SIMPL domain is named for its presence in mouse
                     protein SIMPL (signalling molecule that associates with
                     mouse pelle-like kinase). Bacterial member BP26, from
                     Brucella, was shown to assemble into a channel-like
                     structure, while YggE from E. coli has been associated
                     with resistance to oxidative stress; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HET7242594.1"
                     /translation="NNVNNIYFSLSNKRLDDLKNSLLKDAIDNAKTKADIAARATGLK
                     VIGVKSIIVGEAGLPPPIPMYNTESLKPGAGAISTPIISGQQEISMTVSIIYLIG"
BASE COUNT         1127 a          687 c          626 g         1231 t
ORIGIN      
        1 catactagag agtcaaactc atgactatac actgtaaatc taagctcaac tatcccggaa
       61 tccccaaaac atttgtcttt ttttgagtaa ctatactatt catgtacagt tctaggattg
      121 gataatgtat cctatacatg atcacaaaat aatattaatt tattaaaaaa cgaagcctat
      181 tgcttttttg ttatgtacca tatgaatata ttgtattcgg aagatctaag ttggtctagc
      241 caactgtaga agtttaggaa tatgagcgtt tttagttagc gacccaaagt agcctataaa
      301 gcgctgcgct tctacttcat cattatatat tgctaatgcc gtggtgaact gttctggatt
      361 tgagtaatta gcagtttcat aaataacatg aataccatca acaaccatga agctgatcgg
      421 caggttaggc aatctcatca agtcaaatcg aggggatctt actatttggt taataagatc
      481 caaagtctgt ctgttaggag gagttcttat tattgcgtta agcctatttt ccaaactaat
      541 ctgttctgga tttccatcta gtatgtgtat ccctacccct cttccaaatg tttcaaatgt
      601 tttatttgat acatcgggtt gatggtaacg tgtagcaaaa taaacttctt ttttggcgtt
      661 ctctagcagt tttaagacct tatttaccag gttaccaaaa ttttttacaa tttcaattcc
      721 agtcagatga tttccagtaa tggtcttgta attacccgtt gactttagta tttccgccac
      781 tattgtatct ttttgttctg atggaaagtc ttctctccta cccaatacgt caacactctt
      841 tagtttccaa taactatcaa caacaccatc cattgtttta atctgtgaat tgtaaataag
      901 cgaaccaaaa gtcgtagtcc tgtagaacga gtcccttttt tcaattagtc ctaataaaac
      961 tagattcttg agtctagtgt aaaactgctt tttacttaag ccacctatat aattggttga
     1021 agaagcctta agacctgagt atacggccct aaaaatattg gaagaatacc tatcagctag
     1081 aacgctaaag acgtcctgtg caatcaagct atttttgaca atatcgcgct tcaagtgaga
     1141 atattatcca ataagcgaca gatctaatta agtttgtccc agaatttggc aatttcttgc
     1201 tgaaatagga catgataatg atacttttcc gacatgggcc accatttccg tcacaggaag
     1261 cttttcagat tatgaccctc ctaagataaa tgtctatatt tgaatggtct gaaaccacga
     1321 taaattgagt ttccaaataa tgggtattac ggtaattatc ttacataaat tcggctttta
     1381 agttttatga cccaaataat ttggaatatg tcgaaaaaat cagggatgga cataataatc
     1441 tgaaatttga atggtataat agaatctcaa ttctgagtaa gtacgtccat aattagatga
     1501 aggaaaagtt agatggagtc agtaagacta ttagactaat aaagtctcag caaatgtcat
     1561 ctactgatag ttccactcaa tcataacgac tgcacaataa tatagcatga catcactctg
     1621 catcgatggc cgaattgata gcagctatac atataacgga gacaaactag tcctcggtat
     1681 actgagcact tagtactatg ggcagttaag tgagtagacg aaattatgag gagtgatgtt
     1741 actttatgtt ctattacatt ccctacaaac tccaaaccag tcacctacaa tttccttcat
     1801 gttctcgcta ctgaaggata atccacattc aaaacacagg aatgcacttt tcatgtccta
     1861 taatcctaac atccttcaaa gtcaaccttt atgaaacttc gaactccgcg taccagaagg
     1921 acaattgtat ttctaataga tagttacatt ttcttgcaca atgaattatt gttctaatag
     1981 aactgtgact tccacaagag tataaagccc gtatcggtca tgctgatgat ggatttacat
     2041 aaattattat ggcaacttgt tgtcgagaga gggtagtgcg ttcaattagg tagttttgat
     2101 tgcattgtca tttgcaaaat gttaactatt tcgtctcata agacctatga caagaaaata
     2161 gtcgtatgct aggaggacat agactgacct agcttgtcca ttccttccag catgcataaa
     2221 aggccttaat cacccttctt aagttcagta ttactcaatc cacaatttgt acacctgtac
     2281 gagacagttc ttccagtctc cttatctagt ttcatctctt ctccacaaca tgcacacttc
     2341 ataattaatt gatcctataa ccatattcat tgttcgacct taaaaataaa ttgaattgca
     2401 gtattcatga gttctatccc aaattagtta ttttgcaaga caagttcttg attcatcttt
     2461 cagtgctaca tgggttagtg gcgttcccga tttagaaatg cgtcattttg gcatctattt
     2521 tgtcaaaagc tgagcactac caaaaattac tgaaaaggca cggcaccaga taagagcggt
     2581 attatacttt gttatatcag taccagcagg tataagataa ttttggttac ctatattgcc
     2641 tttcaatctt cccagattga ctatatccgc attagtttta tctgtcgata ggtagacata
     2701 taaatcaggt ccattagtag ccttgaaatt ttccaatctc aagatatcag ttccgtcagc
     2761 aagttgaatt atcttagcta caccttcagc attatggaat tcatctccag cacccacaaa
     2821 gttaccaatc aaggtttcgt ttgatgatgc cgacattgta gcgactgaca aattctcgct
     2881 tacagtattg ttatccttgg cagctacggt cattattatt tctttttgct tttgagtcat
     2941 attgtttgct gcctcaattt tttcgtcttc ggtcatattc atgaaccttt gaaaatcgga
     3001 tgacactgac gatgagggta agggttcgtt tattacagtg tttatgagaa ggggagaaat
     3061 tgtatagatt gcaaaagtaa tcacaataat tgcagtcata attcctatga ttatttttgt
     3121 ccttgtattc acgttaatct atctatcgtg gtctcacatc aatataaata tcacacagtc
     3181 taaatcgtta gaatatgttt agtgaaatgc aatttttaaa actagttatg aaatttactc
     3241 gtaacttttg aatctagagt aaagtgtgat ggtaccaagg tatctttaga ataataaaga
     3301 aaatgctgag ggtgttacct ctgaagggat atttaagtat gtccaaaaaa agagataagt
     3361 gattatctat ctaacctatg agatagataa tgcttacagt catggagatt tcctgttgcc
     3421 ctgatattat tggtgttgat attgctcccg ctccaggttt aagagattca gtattgtaca
     3481 tggggatagg cggaggcagt cctgcttctc caacgattat tgattttact cctatcactt
     3541 tcaaaccagt agctctcgca gcaatgtcag cctttgtttt tgcgttatca atagcgtctt
     3601 ttagcaaaga gttcttcaag tcgtccaacc ttttattcga caaactgaag taaatgttat
     3661 tcacattatt g
//
LOCUS       DASSIK010000242         3311 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_744530, whole genome shotgun sequence.
ACCESSION   DASSIK010000242 DASSIK010000000
VERSION     DASSIK010000242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3311)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3311)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3311
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_744530"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            539..748
                     /locus_tag="VFI64_04560"
     CDS             539..748
                     /locus_tag="VFI64_04560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242595.1"
                     /translation="MGRVEKGVHCSVQGCDNSAERSISSSKASMAGDLVINTSNKRAY
                     LCRQHYKEWKKATKDDRENERARWA"
     gene            complement(790..1758)
                     /locus_tag="VFI64_04565"
     CDS             complement(790..1758)
                     /locus_tag="VFI64_04565"
                     /inference="COORDINATES: protein motif:HMM:NF012703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginase family protein"
                     /protein_id="HET7242596.1"
                     /translation="MHTLLNAIETLFRIPEKTIARASFGDLDIGVTFEQSDVIMLGIP
                     LEETTSFGKGTARGPEAIRTTSAHQIETFVFEEKVDIKNLIRILDIGDLIIPRKIGGS
                     HNVPLIMSYLDQNLTGIIRQLRDCNKIPISLGGEHTISYFCYKGLSNHKPLLIHFDAH
                     RDLKSEYNGNRLCHTTPFFRLIEEGHVTGNDIIQIGIRQADEVEDQFAHDNGVITFDA
                     WEVNKNIEYVISSLSELTKNRKIYISFDIDVYDIQYVPCTGTPEPFGLNPFDIVEIFK
                     GIHETANLVGMDMVEVSLRNNDYREGTLATQTLLRLLTRKFLHIQH"
     gene            complement(1837..>3311)
                     /locus_tag="VFI64_04570"
     CDS             complement(1837..>3311)
                     /locus_tag="VFI64_04570"
                     /inference="COORDINATES: protein motif:HMM:NF012364.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type B DNA-directed DNA polymerase"
                     /protein_id="HET7242597.1"
                     /translation="DADLTFRLTSFNDDLLMKLLVAIARISRLSIEDVSRFGVNQWIR
                     GMLYFEHRKINALIPRRDELLTKGQASTTAIIKEKKYRGGLVVEPTAGIHFNVVVVDF
                     ASLYPSIIKVHNLSYETVNCPHLECQNDPAQNIPNTNHWICKKRRGITSLLIGSLRDL
                     RVGYYKQLSKDKSLAYDERQLYVVVSQAIKVILNASYGVMGAEIFPLYCLPVADATAA
                     IGRDTTTKTIQKCQEIGIEVVYGDTDSLFLKDPTEGRVEEVSKWARVNLGIDLELDKE
                     YRYVVFSDLKKNYLGVLKDGTVDVKGLTGKKSHTPPFIRRAFYQVLDILSNVNTASDF
                     TSAKVKIIEVIKENALKLEANEIPLPDLTFNVMVNKSPEKYGIKLADNFKNFSIDGTG
                     NDIASFKGLPQHIKAAKLLSGSGKEVKVGHIISYVKTKTTDGVKPVELASFNEIDKEK
                     YLEAIESTFDQLLSVLNVNFKSIIGKPRQANLDELFWKRS"
BASE COUNT          979 a          651 c          612 g         1069 t
ORIGIN      
        1 atgaagttaa gagcaatcaa cttgttttgc gtgacagggt gaacaaaagt cagcatcatg
       61 tctcacttga agagattatc aaaatgatag aatcacaaat cgttgacaaa ccttatctcc
      121 cattaaattt gccatctcac ctttctcgac gtcctaaaat aatgaattag ttgccacttc
      181 atggtagatg ttaaatcaag caacaatcat gaactttaat cctacgcgtg gtgactggct
      241 ttcctcttta ccttaaatca gtagcgttcc taaatgtgaa tgtaaatata tgatgatccc
      301 aatttctgcg catttaggat atttctggat tacaaataaa tacgtacagt cagattatat
      361 cgcccataaa atagaatcaa atcctacaat aagattgtgt atgcggatct aatgcagtaa
      421 aattgagata ggaatatttt acatatttca aattattttg tgtgttggtg aattggacgc
      481 aatacgattc tatattagat catcttttta tacaccaact ttgtactagt tctcatagat
      541 gggaagagta gagaagggag tacactgtag tgtccaaggt tgtgataatt ctgcagagag
      601 atcgatcagt agtagcaaag caagtatggc aggtgatctt gtcataaaca catcgaacaa
      661 aagagcatat ctttgtaggc agcattataa agagtggaaa aaggcaacca aagacgaccg
      721 agaaaatgaa agagcgcgat gggcatagtg gtttgctttt tattgaggat tctagcaggc
      781 tcgaacgaat taatgttgta tgtgcagaaa ttttctagtc aataatcgaa gaagagtctg
      841 ggtagctaaa gtgccttcgc gataatcgtt atttcttaac gaaacttcaa ccatatccat
      901 accaactaga ttggcagttt cgtgtatgcc tttaaaaatc tctactatgt caaacggatt
      961 cagaccgaaa ggttctggcg ttcctgtaca aggaacatat tgaatgtcat atacatctat
     1021 atcgaatgat atgtaaattt ttctattttt cgtcagttcc gataaactcg agatgacata
     1081 ttcgatattt ttgttcactt cccaggcatc aaacgttatc acgccattgt catgtgcaaa
     1141 ttgatcttct acctcgtcag cctgtcttat ccctatctgt ataatgtcat tacctgtgac
     1201 atggccttct tcgatcagcc taaaaaatgg cgtagtgtgg cataacctgt ttccgttata
     1261 ttctgacttg aggtccctat gagcatcgaa atgaattaag agtggtttgt gatttgaaag
     1321 acctttatag caaaaatatg atatagtatg ttctcctcca agagatatgg gaattttgtt
     1381 gcagtctctt aattgtctaa taatgccggt aagattttga tctagatatg acataataag
     1441 aggaacattg tgagaacccc caatcttcct aggaataatc aaatctccta tatctaagat
     1501 tcttatcagg tttttaatat cgaccttctc ttcaaataca aatgtttcaa tctgatgtgc
     1561 agaagtagtc ctaattgcct ccggtcctct tgcggtacct ttcccaaagg aagtagtttc
     1621 ttctagtgga attcccagca tgatgacatc tgactgttcg aatgtaacgc caatatccaa
     1681 gtccccgaaa gatgccctag caatagtttt ttcgggtatc ctaaacaaag tttcaattgc
     1741 attaagaaga gtgtgcaaaa tatgaataga tgggtgttcc tttcatttaa attcgttatc
     1801 ttagaaatag ttagaattac gtcttgttgc cgatagctag gatcttttcc agaaaagctc
     1861 gtctagattc gcctgtctag gcttgccaat gatagattta aaattcacgt tcaacacaga
     1921 aagtaactgg tcaaatgttg actctatggc ttcaagatat ttttctttat ctatttcatt
     1981 gaagctagcc aactccacag gcttaacacc gtcggtagtc tttgttttaa catacgagat
     2041 aatatgacca acctttactt ccttgccact gccactcaat aacttcgcag ccttgatatg
     2101 ctgaggtaat cccttgaatg aagcaatatc attcccggtt ccatctatcg aaaaattctt
     2161 gaaattgtcg gctaatttaa ttccgtattt ttctggagat ttgtttacca tcacattaaa
     2221 agtgagatcc ggaagtggga tttcgttagc ttcgagtttc aatgcatttt ctttgataac
     2281 ttctattatc ttcacttttg ctgaagtaaa atcagaagca gtatttacgt tactcaaaat
     2341 gtcaagaact tgatagaatg ctcttcttat aaacggagga gtgtgggatt tttttcccgt
     2401 tagtcccttt acatcaaccg taccgtcttt tagtactccg aggtaattct ttttcaaatc
     2461 gctaaaaact acataacgat attccttgtc tagttcgaga tcaataccca gattgactcg
     2521 tgcccatttg gaaacctctt caacccttcc ttcagtggga tctttcaaaa acaaagagtc
     2581 cgtatcgcca tatactactt ctattcctat ctcttggcac ttctggatag ttttagttgt
     2641 agtatccctg ccgatagcag cagttgcgtc agccacaggc aagcagtaca gtggaaatat
     2701 ttctgcgccc atgactccat agcttgcgtt aaggatgact tttatggcct ggcttactac
     2761 gacataaagc tgcctctcat cataagcgag agacttatct tttgatagtt gtttgtaata
     2821 cccgactcgt agatctcgta atgatcctat caatagagat gtaatgcctc tccttttttt
     2881 gcagatccaa tgattagtgt taggtatatt ttgggcagga tcattctgac attccaaatg
     2941 aggacaattt acagtttcgt atgacagatt gtgaactttt attatactag ggtaaagact
     3001 cgcgaagtcg accactacaa cattaaagtg tatccctgca gttggttcaa cgacaaggcc
     3061 gccacgatat tttttttctt tgattattgc cgtcgtagaa gcctgcccct tcgtcaaaag
     3121 ttcatcgcga cgggggataa gtgcattaat ctttctatgc tcaaaataca acatacccct
     3181 tatccattga ttcacaccaa atcgtgaaac gtcttctatg gataatctgg agatcctcgc
     3241 gattgcaact agaagtttca tgagaagatc atcattgaag ctggtgagcc taaatgtcag
     3301 gtcagcatct t
//
LOCUS       DASSIK010000243         2148 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1141882, whole genome shotgun sequence.
ACCESSION   DASSIK010000243 DASSIK010000000
VERSION     DASSIK010000243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2148)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2148)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2148
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1141882"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            104..337
                     /locus_tag="VFI64_04575"
     CDS             104..337
                     /locus_tag="VFI64_04575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242598.1"
                     /translation="MSDLNINWDEVIKKEALGIGDYDLGEILGVEAGHVITRKGTVDK
                     DKFSLPKDLVERFDGHKVWFKISQEDAQRYQRY"
     gene            complement(718..1353)
                     /locus_tag="VFI64_04580"
     CDS             complement(718..1353)
                     /locus_tag="VFI64_04580"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HET7242599.1"
                     /translation="MKDGLTIPEGIPSLMSSNVAIVMNSDAIILESDRFVDEAINLMK
                     DRNDRSVLASHKGEVVGLVSKTDILYKIIAEGRNPSKVRLREIMTSPVLAVDPHTTVK
                     EALSVMNKRNVRQLMVHAYSAVLGIVSREEVSRMMEKIALSMEDAALEGTPVCIIDQK
                     TISYVKDPSKAKLSCPYCGSPFDTKEGLSKHIDRLHGESGILEGDVRHMLE"
BASE COUNT          663 a          433 c          393 g          659 t
ORIGIN      
        1 ctagaattat cgctggtatt tttaggtcaa aatcttactt tttgtctttt tttcgatgta
       61 tgccagttat aaccattatt acaaatgcaa tagatgtatg actatgagcg acttaaatat
      121 caactgggat gaagtaatta agaaggaagc actagggatt ggtgattacg atcttggcga
      181 aattctaggg gtagaagcag gtcacgtgat tacgaggaaa ggaacagtcg ataaagataa
      241 attctcacta ccaaaggacc tcgtagagag atttgacgga cacaaagtct ggtttaaaat
      301 atcccaagaa gacgcacaac gataccaacg ttactagtga actgtacgta tgaaatactc
      361 attacccaac ttattggaga taattgaaat gatcgtatgc cattttatac tgacggttta
      421 gagaacgtat aagattaaat tacgaaatgt tccctcttag ataacgtatt tggtaattgg
      481 ataaaggata tgcagatcta gtccaagcac atgcagttgt ttacgacaat aagactgtcc
      541 atgacgatct cacaatattt attgccatca catccgacgg gtagtcagta gcggttcata
      601 tttctatcat cgagatattt ttatttcgag actatttgtg gtcaggaaat acattataaa
      661 cacttccaaa aaaataacca taatgaggag tccaccagga taattgtcag aatttcctta
      721 ttcaagcata tgtcgtacat ctccctcaag tatacctgac tcaccatgga gtctgtcgat
      781 gtgcttagac agtccctctt tagtatcaaa aggagatcca caatatggac agctcaattt
      841 agccttactg ggatccttaa cataagaaat tgttttctga tctattatac agacaggtgt
      901 tccctctaaa gccgcatctt ccatagaaag agcaattttt tccatcatcc tcgaaacttc
      961 ctccctagag actatcccta gaacggctga atatgcatgt accattaact gtctgacatt
     1021 tcgtttattc atgacggaca gagcctcttt taccgttgta tggggatcta cagctagcac
     1081 tggacttgtc ataatttccc tgagcctcac tttgcttgga ttccttcctt ccgcaattat
     1141 cttgtagaga atatcagttt tacttaccag gccgactact tcacccttat gcgacgccaa
     1201 cacactgcga tcatttctgt ccttcattag atttattgct tcatcaacga atcggtcgct
     1261 ttcaagaata attgcatcac tgttcattac gattgccaca tttgaagaca tgagcgatgg
     1321 aataccttct ggaatggtaa gaccgtcttt cacaacagta tatagcgtgt gatatattta
     1381 tagatattta ggtcttaaat ttcggttatg attctcagtg acttatcagc taggaatgag
     1441 aatggtccga tcctcgaaat tctaatttcg ggacaattct gtaaaagtgt agcatgaatt
     1501 atagtaatgt cgataattcc tctgaaagat cagtggattt acacttttgg ctctctaatt
     1561 acacatctca tcgcctccaa gctacctgtt ctattaaaaa atcatgtcga agaaagcaga
     1621 gggacaattt gaatctaaca tgtcagaaat ttgcttttaa ttgatttaaa atagtttctt
     1681 ttgtgtttca atttcttgtc tgcgggagaa gttctaagtt gaactccaca acatggacaa
     1741 aaaacacctt gatgaaaaag ataaatctca catctactgc aatatttcct gccctcactg
     1801 taccctggtc tgtatttcct caccattagt ctttcgcaaa tacttttgca aaccataggg
     1861 agcgtagcgt gagagtcgat aataaaagtt agagcactgg acagactggg agggtatgtc
     1921 aataattaac tatcaacatt tctacaatca gacagacccg ttaatgccac gcaacatctc
     1981 gaccaatgag acctccctca gtaacaaagg aagcggacac actcgcgttt ggtggtgggt
     2041 ttgtttatat taacgcagct aagcatcagt ccaacaaatg tttatgagta ctttcaacct
     2101 ttacatagta gatatcggta tacggaagaa tcaatccctc acaagatt
//
LOCUS       DASSIK010000244         7078 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1441945, whole genome shotgun sequence.
ACCESSION   DASSIK010000244 DASSIK010000000
VERSION     DASSIK010000244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7078)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7078)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7078
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1441945"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1024
                     /locus_tag="VFI64_04585"
     CDS             <1..1024
                     /locus_tag="VFI64_04585"
                     /inference="COORDINATES: protein motif:HMM:NF013811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242600.1"
                     /translation="IIGSAVDFKDGDLALRGNFATLGFNTEIIDRRAGRIIKKEEAKE
                     LCQYLERNIKFSDPEVSVKIIPTIAHRVIVRLRHNKISLSAKITNTDPAYDRIDGIGI
                     SKTFVKDMHVKNCDAEDNSESSMLSARIVNEFTEQCILLAKNHTVNLKRITENKRPMN
                     IILLRDPGNNLPSLQQINVKYGIQAACVVDMPVELGIARTLGMEFFSAGGIDDYEIKA
                     EETSRLLRKFELVYVHLKGPDEYGHDGNAVGKKESIEDIDQRFFGTLLKDPTLTNPTI
                     IVSGDHSTPCIAKAHSDDPIPLLISGNLVKKDGSNRFTESDASRGTLGCLSGVDVLHV
                     ALRMIR"
     gene            complement(1077..1484)
                     /locus_tag="VFI64_04590"
     CDS             complement(1077..1484)
                     /locus_tag="VFI64_04590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HET7242601.1"
                     /translation="MLLPSEIESKSLIPAVRAILAKVLVKEKGLKEEEVARLLGITQA
                     AVSNYIRGTRGDVELISKLSSFQQIMRMIEDIVEDLSSQRAYTAGTLSKFIALCNYMR
                     YSFIICDVHHSLEENIDEKICEQCKIILTETGK"
     gene            1710..2789
                     /locus_tag="VFI64_04595"
     CDS             1710..2789
                     /locus_tag="VFI64_04595"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HET7242602.1"
                     /translation="MTTKFGFTQGLNVARLGLDETQIMTACQIADRLDYDSIWAMDHS
                     NVPQWKNAVVNDAWLLLAAIGAITRKVELGTCVTDAIRRHPSAIALSTITLDRLTNGR
                     AILGIGAGEAQNVVDFGIEFSKPVTKFKEQLELIELLFKSDPDNRVDYNGQYYKLTNA
                     CLQAKSIRKPRPPIYIAAGAPKTLGLCAAYGDGWIPIGYTPALFKHHADVIRENARKI
                     GRDLSGFQFANDVDVYFTDDGEEAWNKMKNAVKVSLYKPELLTVHNIEQDSEFDFRRY
                     FTEYAMNKPELMEQMKRAALKIPDSVARTAIGVGRPDDVIEMLERFIEAGTNHFIIRF
                     WGEGYFKNIELFGRKVIPYFRDKEK"
     gene            complement(2807..3751)
                     /locus_tag="VFI64_04600"
     CDS             complement(2807..3751)
                     /locus_tag="VFI64_04600"
                     /inference="COORDINATES: protein motif:HMM:NF019159.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase RNA specificity
                     domain-containing protein"
                     /protein_id="HET7242603.1"
                     /translation="MSHAHTDHLHRTKKRTKGNAKIITSTATSRIANGRGYELLNVYQ
                     DHAFKLLDSGHILGSTGLLIDDELYYTGDLSIRKRAFMKPAVIPKVKTLIIESTFGHE
                     DYVFPRSESIIHEANILISEMYSQGRPIVLLGYPLGKAQILTQLFAQWEPIFVEDSIY
                     KMNLLYSELGIDISCHTPFSVAENKGSLSSNKPWILIAPLNSTRNGFLQYVKRKYGPT
                     TVGFSGWGIKPNFKYLLGLDHCFPFSDHCDYNDLISFVKRCSPEKVYTFHGFIDEFAH
                     TLRCLGFDATSLKNKELEGYATGSMVLTDYFDKKSQDN"
     gene            4122..4817
                     /locus_tag="VFI64_04605"
     CDS             4122..4817
                     /locus_tag="VFI64_04605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242604.1"
                     /translation="MIAKINFVDTYSKILVIACVIMATLVLVSSEFYSVVSSTQSQIS
                     DGHFQPVLDRSQSSNISFNVEGTINTVITASPSEKRDRPSSLDHITNVSSEYVLGGKW
                     RLDVINNNVTYFKSNFTMVGINGDEPHFHLIIYKPRTKEISILFSNGSDNPGLLLHGL
                     DKTVSFSGNCDIITNGVLEWRDVPMSVSILNDKVIKISVDEKRTNNHFSKNSIFGLVN
                     LMEPIIQNISDTN"
     gene            complement(4960..6021)
                     /locus_tag="VFI64_04610"
     CDS             complement(4960..6021)
                     /locus_tag="VFI64_04610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate--phosphoribosylaminoimidazolecarboxamide
                     ligase"
                     /protein_id="HET7242605.1"
                     /translation="MKQFEMIKKRQKRPKICTIGSHCSLQVLKGAKDEGFSTILICEK
                     KRYNIYKRFAFIDHILFVDRFENILEKPYQDRLNELDCIIIPHGTLVANLNSDQIEGI
                     NIPFFGNRFILRWEADRLLKEKLMRSARLNVPNTVKTKDEIDRLCIVKLRGAAGGRGY
                     FMAWDKQSFNEGCQRLVNSGVIEREEDLYIQEYIQGVPVFLHYFYSPLSDEVEFMGVD
                     RRYESDIDGIARIPSKQQLNVTIEPTYNVIGNIPLVLRESLLEEVYRMGENFVKATQK
                     LVPPGIPGPFCLEGVYTKDADFISFEFSARIVAGTNLYIAGSPYSDLLFENEMSTGRR
                     IALEIKRSFSNQQLDKVLT"
     gene            complement(6105..6290)
                     /locus_tag="VFI64_04615"
     CDS             complement(6105..6290)
                     /locus_tag="VFI64_04615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242606.1"
                     /translation="MSVIQRKVIEIIQTLKLAKKTSKDDYMTHLRLVLLGMGVVGGIA
                     FVIKLIAEFLTFSGNNR"
     gene            complement(6410..6865)
                     /locus_tag="VFI64_04620"
     CDS             complement(6410..6865)
                     /locus_tag="VFI64_04620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HET7242607.1"
                     /translation="MQKFDELDMKILSELSKNASISVPQLSKKLGVNASVLYSRIKRL
                     TKRNLIKKFTIIVNDGLLGINVKAIVGINRDPKLKEAIHIALLKIPEVIVLSEVTGRF
                     DMLVSVNAFTLEELHKVVIEQIGKIEGIQNTETFVQMQRTEKEQIFSIR"
BASE COUNT         2194 a         1354 c         1332 g         2198 t
ORIGIN      
        1 aataattgga tctgcagtag atttcaagga tggggatctt gcgctgcgag gaaatttcgc
       61 aactctgggt tttaatacgg agataattga cagaagggcc ggcaggataa tcaaaaaaga
      121 agaagcgaaa gaactgtgtc aatatcttga acgaaatata aaatttagtg atccagaagt
      181 ctccgtaaaa ataattccaa caattgcaca tagggtgatc gtaagattga ggcacaacaa
      241 gatttcacta tccgcaaaaa taacaaacac tgatcccgcg tacgaccgaa tcgatgggat
      301 tggaatctcc aagactttcg tcaaagatat gcatgtaaaa aattgtgacg ccgaggataa
      361 ctccgaatct tccatgctat cggcaagaat agttaatgag ttcacagaac aatgtatctt
      421 gctcgcgaaa aaccatacgg tgaatttgaa gcgtatcaca gaaaacaaaa gaccaatgaa
      481 cattattcta cttcgggacc ctggtaacaa tttaccatct cttcaacaaa ttaatgtaaa
      541 atacggaatt caagcagcat gcgttgttga catgcctgtc gaattaggga tagcgaggac
      601 gctgggaatg gaattttttt ctgccggtgg catagacgac tatgaaatta aggccgagga
      661 aactagtaga ctgctcagga agtttgaact ggtctacgtt catcttaaag gacccgacga
      721 gtacggtcat gacggcaatg ctgtgggtaa gaaagaaagc attgaagaca tagatcaaag
      781 gttctttgga acattgctaa aagatccaac tttaactaat cccacgataa tagtttccgg
      841 agatcattca acaccctgta tagctaaagc tcacagcgat gatcctatcc cgctcctgat
      901 atcaggaaat ttagtgaaaa aggatggtag caatagattc accgagtcgg acgcgtcacg
      961 gggtacactg ggatgcttaa gtggcgtgga tgtgctacat gtggcgttaa gaatgatcag
     1021 gtagttgcta tctatgcctc atcaatttca aatcgcgaaa ataccggcca gtcctctcac
     1081 ttgccagtct cagtcaaaat aatcttgcat tgctcgcaaa tcttttcgtc tatgttttct
     1141 tcaagactat gatggacatc acagattata aaggaataac gcatgtaatt acataaagca
     1201 ataaactttg aaagcgttcc tgctgtatat gctctttgtg acgaaagatc ttccacaata
     1261 tcctcaatca ttctcatgat ctgctgaaaa gaacttaatt tagaaattaa ctccacgtct
     1321 cctcgtgtac ctcgtatgta attactgaca gcagcctgtg taatacccaa cagtctagcc
     1381 acttcctcct cctttagccc tttttctttg actagcactt tcgctaatat ggccctaacc
     1441 gctgggatca gtgatttcga ttcaatttca gaaggcagta gcattaggca gacctaaatt
     1501 ttccttgcta actatataaa ggttctttat aatgaggcta aaccgagtac acattcgcga
     1561 attactattg attcactcgc attagtctaa gtagtttttc aagtctacat ataaagttgg
     1621 ataatcgatt gttgaaccga taaatgtgac aatagaaatc cttacaatct atatatactg
     1681 acggtataca taccgattca atacgtaaaa tgacgacaaa atttggtttt actcaaggcc
     1741 taaatgtggc cagactggga ctcgatgaaa cccaaatcat gacagcatgc cagattgctg
     1801 atcgtttgga ttatgactca atatgggcta tggaccattc taacgttcct cagtggaaga
     1861 atgctgttgt gaatgacgca tggttgttac ttgcagcaat tggggcaata actagaaagg
     1921 ttgaactagg tacatgtgtg actgacgcga taaggagaca tccatcagca atagctttgt
     1981 ctactattac actggatcgt ttaacaaacg gtagagcaat ccttggaata ggtgccggag
     2041 aggcgcagaa cgtcgtagat tttgggattg aatttagtaa accggttaca aaattcaaag
     2101 agcagttaga acttatagaa ttattgttca aatctgatcc tgataacaga gttgattata
     2161 acggacaata ttacaagttg accaatgctt gtcttcaagc aaaaagtata agaaaaccgc
     2221 gccctccaat ttatatcgcg gcaggagctc ccaagacact tggactttgt gctgcttacg
     2281 gggatggatg gatacccatt gggtatactc cggcattatt caagcaccat gcggatgtaa
     2341 ttagggaaaa cgcaagaaaa ataggaagag atctatctgg cttccagttc gcaaacgatg
     2401 tggatgttta ctttaccgat gatggagaag aagcttggaa taaaatgaaa aatgctgtta
     2461 aggtaagctt atacaagcct gagttgctta ccgtgcataa tatcgaacag gattcagaat
     2521 ttgattttcg taggtacttc acagaatatg ctatgaacaa acctgaatta atggaacaaa
     2581 tgaaaagagc tgcactgaaa atacctgata gtgttgccag aacggcgatt ggtgttggaa
     2641 gacctgatga tgttatagaa atgcttgaaa gattcattga agctggtaca aatcatttta
     2701 tcattaggtt ctggggtgag ggctatttca agaacatcga attgtttgga agaaaggtga
     2761 ttccttattt tagagacaaa gaaaaataga atatgttgct gggtagttaa ttgtcctgag
     2821 atttcttatc aaaataatct gttagcacca ttgatcccgt agcatatcct tctagttcct
     2881 tattcttgag tgaggtagca tcaaatccta gacatcgaag agtatgtgcg aattcgtcga
     2941 taaaaccatg aaatgtgtag accttttcag ggctacatct ttttacaaat gatatgagat
     3001 cattataatc acagtgatca ctaaacggaa aacaatgatc tagtcccaat aagtatttga
     3061 aatttggctt aatcccccat ccgctaaaac caacagttgt tggtccgtat tttctcttca
     3121 cgtactgcag aaacccattt ctggtagaat ttaacggcgc aataaggatc catggtttgt
     3181 ttgatgataa cgaaccttta ttctctgcca cagagaatgg tgtatgacaa cttatatcga
     3241 ttccaagctc tgaatagaga agattcattt tgtagattga atcttcgaca aaaattggtt
     3301 cccattgagc aaaaagttga gtaaggattt gtgccttccc aagtgggtac cccaacaaaa
     3361 cgattggtcg accttgggaa tacatttcag aaataagaat attagcctca tgtattatgc
     3421 tctcgcttct aggaaaaaca taatcttcat gtccaaatgt ggattcaatg attagtgtct
     3481 ttactttggg gatcactgca ggtttcatga acgccctctt tcgaattgac aggtcaccag
     3541 tatagtataa ctcatcgtct attaatagcc cagttgaacc caaaatatgt ccagagtcca
     3601 aaagtttaaa ggcatggtct tgatacacat tcaaaagttc atatccacgt ccatttgcaa
     3661 ttctcgaagt tgcagtcgaa gtaattattt ttgcattgcc tttggttctt ttctttgtcc
     3721 tatggaggtg atcggtatgt gcatgcgaca caaaaatgta gtcgcaatcc atgtcttttc
     3781 ttgggtctaa acaaattttc tgatccttgt gattcaccgt tattgtagac ttactgcaag
     3841 aaacattcaa tgtcctatcc aaagctgtca ttcattttac ataatattat attaattttg
     3901 atacaggctg attgatatta tcgaaatagc taacattcgg tatcataaaa ttgttcgatt
     3961 ggtaaaggca ttgttgattc cccctgattg cttttgtaat ttttgatgga gtcttaccgg
     4021 taatttattt agatctggca tcttattctg tcgaataaaa tttgtactga ttgacattta
     4081 caagtaaggt ttaagtttga acataattcg aatagttagt aatgattgca aaaataaatt
     4141 ttgtggatac atattccaaa attttggtca ttgcatgcgt cattatggct actcttgtat
     4201 tagtttcctc cgaattttat tcggttgtat caagtacaca aagccagatt tctgatggcc
     4261 attttcaacc tgttcttgat cggagtcaat catctaatat ttcctttaat gttgaaggaa
     4321 ccattaatac ggtcatcact gcatctcctt cagaaaagag agacaggcct tcctcacttg
     4381 atcacattac caatgttagc tccgagtacg tgttgggagg caagtggcga ctagacgtca
     4441 taaataacaa tgtaacatac ttcaaatcta attttactat ggttggtatc aatggagatg
     4501 aaccacactt tcacctaatt atttacaaac cgcgcacaaa agagatttct attttgtttt
     4561 caaacgggag cgataacccg ggacttctct tgcacggact agataaaacg gtatcctttt
     4621 cggggaattg tgatataata accaatggtg ttttggaatg gagagacgta cccatgtctg
     4681 tatctattct taatgataaa gtaattaaga taagtgttga cgaaaagaga acgaataatc
     4741 acttttcgaa aaattcaatt tttggattag tcaatctcat ggaaccaata atccagaaca
     4801 taagtgatac gaattaaaat aacaggggag agtatgttca ttcttattaa gtgtgacaga
     4861 aaagcccttc atacatcatt ttttttaccg ctattcaata agtgattttt atgatcatca
     4921 ggctagacga attatgcaga aacatgttta atcatacaat taagtcagta ctttatctag
     4981 ttgctgattg gaaaatgatc tctttatctc taaagcaatt cttctgccag tgctcatttc
     5041 attttcaaaa agcaagtccg aatacggtga tccggcaata tacaaatttg ttccagcaac
     5101 gattctagcc gagaactcga acgatatgaa gtctgcatcc tttgtgtaaa ctccctcgag
     5161 acaaaaagga cctggtatac caggcggaac taatttttgt gttgccttga caaaattttc
     5221 acccattcta tatacttctt caagaagaga ttctcttaaa accaaaggaa tatttccgat
     5281 cacattgtaa gttggttcaa ttgtaacgtt caattgctgc ttggatggta tccgtgcaat
     5341 tccatctata tcggattcat atcgcctgtc aacacccatg aattccactt catctgaaag
     5401 tggggaataa aagtaatgca ggaatactgg gactccttgt atgtactctt gtatgtatag
     5461 atcctcttcc ctctctatga ctcctgaatt aacaagcctt tggcatcctt cgttaaaact
     5521 ctgtttatcc cacgccatga aatagccacg gccaccggca gcccctcgca acttaacaat
     5581 gcaaagtcgg tctatctcat ctttcgtttt tacggtattt ggaacattta gcctagcgct
     5641 tctcatcaat ttttctttta gaagtctgtc cgcttcccat cttaaaatga aacgattacc
     5701 aaagaaagga atatttatac cttcgatttg atccgaattc aaattagcta ccaacgttcc
     5761 atgggggata attatgcagt ctaactcatt taatcgatct tggtacggtt tttctaatat
     5821 gttctcaaat ctatcaacaa ataaaatatg atcaataaat gcaaatcgtt tataaatatt
     5881 gtatcttttc ttctcgcata taagaatggt cgaaaaccct tcatctttcg caccctttag
     5941 tacctgcaga gagcaatggg agcctatagt gcatatcttg ggcctctttt gtcttttctt
     6001 tatcatttca aattgcttca atagaataat attattttga aatcatctga aaaaaacttg
     6061 ctgtttttaa cgaaaaattt tcctttattc aaaatatcca taattcatct attatttcca
     6121 gaaaaggtca aaaattctgc tattagctta ataacaaaag ctatcccacc gactactccc
     6181 ataccgagaa gcaccaagcg gaggtgggtc atgtaatcat ccttacttgt tttttttgca
     6241 agttttaaag tctgaattat ttctatgacc ttcctctgaa taacggacaa attatcaacg
     6301 gttgttttca gtaaactcta tttgaactta gcggttgaca gcgtctcata taatacgtga
     6361 ttaacttatc tgatttctgg gatatcaata gatccaaaat ctagatacat tatctaattg
     6421 aaaatatctg ttctttctct gtgcgctgca tctggacgaa agtttctgtg ttttgaatcc
     6481 cttctatctt cccaatctgt tcaatgacca ccttatggag ttcttccaat gtgaatgcat
     6541 tcacagagac gagcatatcg aatcttcccg tgacctcgga gaggactatt acttcaggga
     6601 ttttcaacaa cgcgatgtga atagcttcct tcagtttggg atctctattt atgcctacta
     6661 ttgctttaac gttgatacct aggaggccgt cgttaactat tatagtaaat ttctttatta
     6721 aattcctctt agtaagccgt ttgattctac tatataaaac cgaggcgttc acaccgagtt
     6781 tcttgctcaa ttgaggcact gaaatactcg cattcttgga caactctgat aatattttca
     6841 tatctaattc gtcgaatttt tgcaaataat ccccaccata gttcgtaagg atacactaat
     6901 aaatgtagtt tccagcagtc cattatttct atatggaaat acatacatat ggaactggga
     6961 cactttttca ggaaatgacg atcagatcct cgcgagaagt aaagaaacgg tctggtgatt
     7021 cacggtttgt acatgtccat attcatatca caggaaaggt gcagggggtt tattttag
//
LOCUS       DASSIK010000245         5623 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_245593, whole genome shotgun sequence.
ACCESSION   DASSIK010000245 DASSIK010000000
VERSION     DASSIK010000245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5623)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5623)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5623
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_245593"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..394
                     /locus_tag="VFI64_04625"
     CDS             <1..394
                     /locus_tag="VFI64_04625"
                     /inference="COORDINATES: protein motif:HMM:NF024764.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HET7242608.1"
                     /translation="AIPLLKNALHLDEGNALAWSILGSVYNDLDSEEAIGCFQRSIDL
                     NPGFYLSCRGMGNYYLKKGDYLSAEKYYTQAINLHPNRFGPIYKNRAIARMNTNNRGG
                     AKSDLARYLEECPNAHDKNEIESTLSQL"
     gene            complement(856..1500)
                     /locus_tag="VFI64_04630"
     CDS             complement(856..1500)
                     /locus_tag="VFI64_04630"
                     /inference="COORDINATES: protein motif:HMM:TIGR00296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00296 family protein"
                     /protein_id="HET7242609.1"
                     /translation="MNWRVAEDQGIQLVKIARLALEKFVSEGEIINRDISDKFSQRAG
                     AFVTLYDILEPKEFSLRGCIGYPLPRMSLWESVTTAAIKAATEDPRFRPLTKDELQNV
                     IIEVSILSSPTLVEALQRENIFEKIEIGKHGLIFENPLGSSLLLPQVALEHRWDEREF
                     LENLCHKAGLPVNTWLSENSRIYTFESIIFREESPHGKVIFVNSNPAWSVFSSQ"
     gene            complement(1574..2689)
                     /locus_tag="VFI64_04635"
     CDS             complement(1574..2689)
                     /locus_tag="VFI64_04635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242610.1"
                     /translation="MSESIGVCLYIQSDRDERYILMIKEISMEVLRDQPSEGANKNSS
                     TTTSSLARNDNNVPATQQENPVESNLQTLLEFKKMLQKEQQDGESKVQAINEKIDLTK
                     KEIDEQRIILEDLRLNLKKINEAKDAEYPKFLELKNNLVELRNKMKTLDEKKGNPGAS
                     KPRKERFDMANLARSFDQIERDIQTKKLSKEEERKLVARSKETAVKLHALRLIHKNED
                     DYRNVVSKYEQLKAKITSIFNQKSEFGEKIGKLKESLEELLNLRETLYEDRRKTIREV
                     RENGAKLDMVETQLNAIEYRRSHYSAARSRRTRDGGERKEFKQEAMQERIKRNKENQE
                     RFNLLKDAALRKMSSGGKLTFDEMKLIYGDDGTYDQS"
     gene            2688..3134
                     /locus_tag="VFI64_04640"
     CDS             2688..3134
                     /locus_tag="VFI64_04640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242611.1"
                     /translation="MPRYMFIFDVMEIVLILMDDFEKEYPDFDWKNTPAYKHPNGKDC
                     PCPKHEYIREQINISKTIASNNKAETSEVRYKSPVTLKFCPDHYHIYFDEVIPSMPFK
                     YRLMTKIALKLGAISIQKISYMQSDQCFYCKFGSGGFDRKTELPPI"
     gene            complement(3178..3882)
                     /locus_tag="VFI64_04645"
     CDS             complement(3178..3882)
                     /locus_tag="VFI64_04645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242612.1"
                     /translation="MYFVNWQRNISVTELDGKKVVIKRNKSSKYFHEYILVIAYTTLS
                     FMLCHPTPPPRLGSAMLVNEGFKMRKILEEIGIPTPSLLFISDTSLIEDYIDGGNLYH
                     AFLKGMTHMLAFSAGSLTGRLHNANYVFTDNKSQNYLVTSNGKVFRTDLSFLQKESSV
                     FSRSMDIGSFLASVIGLETDKYKAIETAFFSGYKSETNEPFPYLSIAIRNFLSIGFSP
                     NLTIFKNMAKNSSDLI"
     gene            3951..4628
                     /locus_tag="VFI64_04650"
     CDS             3951..4628
                     /locus_tag="VFI64_04650"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HET7242613.1"
                     /translation="MISSNSSIARRFFSSNNAASYEKIVKFATFGRDSIWKQTMSNLL
                     TKDHCYLLDLACGTGVLSSYIPKEQDHVILGSDLTPDYLLHAKRKSRYSLLTNSIAEV
                     LPFRPGIFDAILSSYLAKYVDLQTVVREHWRLLKRGGLVVFHDFTLPIRKFVRQIWNS
                     YFLLLDQVGRIIKNWRVVLSELDDVIVHSEWVKNLMRELQQVGFESITCKYYTWGTSA
                     IVTGLKP"
     gene            4625..5335
                     /locus_tag="VFI64_04655"
     CDS             4625..5335
                     /locus_tag="VFI64_04655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242614.1"
                     /translation="MSESSRMNEWFVPKFGPIRFRAFVGILFLPYTGMCVSFAIIGSL
                     LSHLIFWDRLAAIFVIYFLSVGVSAHAADNLGSRKTKPWGNYFTRSELIVMTITGISI
                     AYIIGIYYMVQSVPLLWPIAIAEGFFLVAYNFELFSGFFHNNTWFAISWGSLPLLAGY
                     VIQTNSISEVSVISASIAYVISYLEIRISRVYKELRRGSEETNHESARLESQLKVISL
                     GTVIFALFCICLKYFELF"
     gene            5353..>5623
                     /locus_tag="VFI64_04660"
     CDS             5353..>5623
                     /locus_tag="VFI64_04660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242615.1"
                     /translation="MKHLITIDLNGSTYVTPDSIRTLETKCGHVFSFQEKIFLANLGT
                     TQKLLEILVNSQTYVRVTKQFPAPGTRRSCRPGSGGPCSARSPGPV"
BASE COUNT         1620 a         1071 c         1064 g         1868 t
ORIGIN      
        1 tgctattccc ttgctaaaga atgcgcttca tctggatgaa ggaaatgcgt tagcatggag
       61 catattagga tcggtttaca acgatttaga ttcagaagaa gcaatagggt gttttcagag
      121 gtcaatcgat ctgaatcccg gattttacct gtcatgcaga gggatgggca attattactt
      181 aaaaaaaggt gattatttgt cagcggaaaa gtattacaca caagcaatta atcttcatcc
      241 aaatagattt ggaccaattt acaagaatcg agcaatagca agaatgaata caaataatag
      301 aggaggggcc aaatcagact tagcaagata ccttgaggaa tgtcctaacg cacacgacaa
      361 aaatgaaatt gaatcgactt taagtcagtt atagatttta tagaagtgac tcctgcgttt
      421 tgacattaag gtttaaatgc ttagtttaat gaggaggtca gtttcatcgt attaagtggt
      481 cgaccctgca gaacttttat gaaaacggta caaagatttc ttaggcttgg tgtataaggg
      541 caggcatttc catttcaaat tcgtttgaag agatcatggt aaaaacattc taaaatatat
      601 ttatttattg ggttgtagac aaaagacatt ttgaaatgct aatagatgag ggctcatgat
      661 atgcaaactg taaagatgtg gagatgggag tcctgaatag agaccaaaga atagagaaaa
      721 aaatatctgc atcatatctt tgccaaacgt attcctcgat atgtccttaa gcagtgagga
      781 tttctttgtg cttaataagg gaaaagacac tgtttatttc caaaatcgag atcttccaat
      841 tgcatgttac aataattatt gtgaactaaa taccgaccaa gcaggattag agttaacaaa
      901 aattaccttt ccatgcggac tttcctctct aaagatgata gattcgaatg tataaatccg
      961 tgaattttcg gacagccaag tattgaccgg caagcctgcc ttgtgacaga ggttttcaag
     1021 aaattctctt tcatcccatc tatgttccaa tgcaacttgc ggaagtaata ggcttgaacc
     1081 tagcgggttc tcaaatatca agccatgttt tcctatttca atcttttcga aaatattttc
     1141 cctctgtaac gcttcgacta gagttgggct acttagaatc gatacttcaa taatgacatt
     1201 ttgcaattca tcctttgtaa gtggtcgaaa tctaggatcc tctgtagcag ctttaatggc
     1261 tgcagttgtc acagactccc atagtgacat tcttggcagc gggtatccga tgcatcccct
     1321 tagactaaat tcttttggtt cgagtatatc gtacaaggta acaaatgcac cagccctttg
     1381 agaaaatttg tcgcttatat cacgattaat tatctcgcct tctgacacaa acttttctag
     1441 agccaaacga gcaattttta ctaactgtat tccctgatct tctgcgacac gccaattcat
     1501 ctcgagtact tgtatgtgga ataaaataac atctgctcta ttccatacga ccagtcattt
     1561 gtgactttga aactcaagat tgatcgtacg tcccatcgtc gccatatatc aatttcattt
     1621 catcaaatgt caatttacca ccacttgaca tttttcttaa tgcagcatcc tttagtaaat
     1681 taaagcgttc ctgattttcc ttattacgtt tgattctctc ctgcatcgct tcttgtttga
     1741 actcttttct ctcacctcca tctctcgtcc ttcttgatct tgctgctgaa tagtgactcc
     1801 gtctgtattc gattgcattg agttgagttt caaccatgtc aagcttggct ccattttctc
     1861 taacttctct gatggttttc cttctgtcct catacaaggt ttctcgtaaa tttagtaatt
     1921 cttctaacga ttccttgagt ttacctatct tctcaccaaa ttctgatttt tggttaaata
     1981 ttgaggtaat tttagccttc aactgttcgt acttggaaac gacgtttctg taatcatcct
     2041 cgttcttatg gatcaatctg agggcatgta actttacagc tgtttccttg gatcttgcaa
     2101 ctaattttct ttcttcttcc ttagatagct tttttgtctg aatatccctt tcaatttgat
     2161 caaaactcct agctagattc gccatatcaa atctctcttt acgaggcttt gaggcacctg
     2221 ggtttccttt tttctcatcc aaggtcttca tcttgttgcg aagctccaca agattattct
     2281 tgagttctag aaacttcgga tattcagcgt ccttagcttc attaattttc ttaagattga
     2341 gtcttaaatc ttctaagatt attcgttgct cgtctatttc ctttttagtc aaatctattt
     2401 tttcgttaat tgcttgtacc ttgctttctc catcttgttg ctctttttga agcatttttt
     2461 tgaattctaa caatgtttgc aaattagatt cgactgggtt ctcctgttga gttgctggga
     2521 cgttattgtc gttcctggca agactggagg tggttgttga tgaattcttg ttagcccctt
     2581 cacttggctg gtctcgtagc acttccatcg agatttcttt aatcatcaaa atatatcttt
     2641 cgtccctgtc actctgaata taaaggcata ctcctatgga ttcactcatg ccgagataca
     2701 tgtttatatt tgatgtgatg gaaatagtgt tgattttaat ggatgatttt gagaaagaat
     2761 atcctgactt tgattggaaa aatactcctg cctataaaca tcctaatggt aaagattgtc
     2821 cgtgccctaa acatgagtat atccgagaac aaattaatat atcgaaaact attgcttcaa
     2881 ataacaaagc ggagacgtcc gaagttagat ataaatcccc ggtaacattg aagttttgtc
     2941 cggaccatta tcacatttac tttgacgaag ttatcccgtc tatgcccttt aaataccgtt
     3001 taatgactaa aattgctctg aaactaggag caatttctat tcagaaaata tcctatatgc
     3061 aatccgatca gtgtttttat tgcaaatttg gttcgggtgg ctttgatagg aagacagagt
     3121 tgcctcccat atagcaagag gaaattcact ttatcgctaa aatcagaata ttcctgatca
     3181 tatcaaatct gaagaatttt ttgccatgtt tttaaatatt gtgaggttag ggctaaatcc
     3241 aatggacaaa aaattacgaa tcgcaataga caaataaggg aacggttcgt ttgtttcgga
     3301 tttataaccc gaaaagaatg cagtttcaat ggctttgtat ttgtcggttt caagtcctat
     3361 tacgcttgca agaaatgacc ctatgtccat acttcttgaa aaaaccgaac tttctttctg
     3421 caggaaagac aaatcagttc gaaagacttt gccgttagac gtaaccaaat aattttgaga
     3481 tttattatca gtaaatacat aattagcatt gtgcaatctt ccagtcaagc tgcctgcgct
     3541 gaatgctaac atgtgagtca tccctttcaa aaaagcatga tataggtttc caccatctat
     3601 gtaatcttct atcaatgaag tgtctgagat aaaaaggaga gagggcgtag gaattcctat
     3661 ttcttccaga atttttcgca tcttgaatcc ttcgttgaca agcatcgcac tccctaaccg
     3721 cggaggaggt gtgggatggc atagcataaa agataatgtt gtataggcaa taaccaatat
     3781 gtattcgtga aaatacttgc tagacttgtt tctcttgata actacttttt tcccgtctag
     3841 ttctgttact gatatgtttc tctgccaatt tacgaagtac aaaaagtcgt tccgcccata
     3901 tcattgaatt tcgtcttgat tatataatag gttaatgcaa tcatcataat ttgatttcat
     3961 cgaacagttc tatagcaagg cgttttttct catctaataa tgctgccagc tatgagaaaa
     4021 tcgtgaaatt tgccacattt gggagggatt cgatctggaa gcaaaccatg tcaaacctat
     4081 tgacaaagga tcattgttat ctccttgatt tggcgtgcgg caccggggtc ctgtcatctt
     4141 atattcccaa agaacaagat cacgttattc ttggttcaga cctcacccca gattatctat
     4201 tgcatgcaaa aaggaagtcg agatactcgt tattgactaa ttctattgcc gaagtcttgc
     4261 cgttcagacc agggatattt gatgcgatat tatcatctta tctggcaaaa tatgtagatc
     4321 ttcaaacggt tgtaagagag cattggagat tgctcaagag gggtggcttg gtagttttcc
     4381 acgactttac gcttcccata agaaagtttg ttaggcaaat atggaattca tactttctat
     4441 tgctcgatca agttggcaga attattaaaa attggagagt tgttttatcc gagttagatg
     4501 atgtgatagt gcatagcgag tgggttaaga accttatgag ggaacttcaa caagtaggat
     4561 ttgaatccat aacctgcaaa tattatacgt ggggaacttc cgcaatagta actggattga
     4621 aaccatgagt gaatcctctc ggatgaatga atggttcgtt ccgaaatttg gtccgataag
     4681 atttagggcg tttgttggga tattattttt accttataca ggaatgtgtg tctcatttgc
     4741 gatcataggg tcacttttat ctcatctaat attttgggac cgacttgcgg ctatttttgt
     4801 tatctatttt ctatccgttg gagtatctgc tcacgcggcg gacaatctag gatccaggaa
     4861 aactaaacca tggggaaatt actttacgag atcagaactt attgttatga caataaccgg
     4921 tatttctata gcatatatta tcgggatata ctatatggtc cagtcagttc cgctgctttg
     4981 gcctatagca atcgccgaag gattttttct agtcgcatat aattttgaac tctttagcgg
     5041 gttctttcat aataatacgt ggtttgcaat atcatgggga agtcttccac tcttggcagg
     5101 atacgttatc caaacgaatt ctatatcaga ggtatcagtt atctcagctt caattgcata
     5161 cgttatatct tatctagaaa tccgaatatc tagagtctat aaagaattaa ggagaggaag
     5221 tgaagaaacc aatcatgaat cagcaaggct tgaatctcag ctaaaagtta ttagcttggg
     5281 tacggttata ttcgcactat tctgtatatg cctgaagtac tttgaattgt tttgaatctc
     5341 gcaccaaaaa gcatgaagca tctaataaca attgacctga atggatctac ctatgtaaca
     5401 ccagacagca tacgtacgtt ggaaacgaaa tgtggtcatg tgttttcatt tcaagaaaaa
     5461 attttcttgg caaatctggg cacaacgcag aaattacttg aaatattggt gaattcgcaa
     5521 acatatgtca gagttacgaa acaatttcca gcgcctggta cccgaagatc gtgccggcct
     5581 ggatctggtg gaccgtgttc cgcccgatcg cccggtccgg tgc
//
LOCUS       DASSIK010000246         3157 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_345081, whole genome shotgun sequence.
ACCESSION   DASSIK010000246 DASSIK010000000
VERSION     DASSIK010000246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3157)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3157)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3157
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_345081"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            475..1074
                     /locus_tag="VFI64_04665"
     CDS             475..1074
                     /locus_tag="VFI64_04665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242616.1"
                     /translation="MSDQRRYIILALAFLLFNTLVLSQLGTHTSYISALPAKHQTNST
                     TAITTTDVPPVLLSYGGHTYEMLPFVVVDEDGVKKLNFPRLADEYKPAVKIPSDKTFT
                     FEFTKMPREVNAFGIDYDSDTTEVNPLVKIGKHQFSFGNLHGIRTLELRAIYDNGKYV
                     TYTALVNIDKATNEIGAILDHQSNSTANKTIIPDIFSSH"
     gene            1520..>3157
                     /locus_tag="VFI64_04670"
     CDS             1520..>3157
                     /locus_tag="VFI64_04670"
                     /inference="COORDINATES: protein motif:HMM:NF012956.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="discoidin domain-containing protein"
                     /protein_id="HET7242617.1"
                     /translation="MKKVTVSYSQSILGLFLIAILFISSSSIGLAFSASSSATTNIAS
                     CNETQIFGVSASASDKSFPASAVLDLNPQTLWSTYGKGAWLQLDLGKVKTVCSLDIAW
                     YKGNQRNVNFIISVSKDGSTYKNVFDSKSRGTTTSFERYDLQVVDARYIKITVNGNTQ
                     NNYATIADLRVNTSSLENINPVEQPNVSSGSADQCTKAKISKVTASGHYKNDVTSNAI
                     DNNPQTRWSNQKKPSSITLDLGNSKTVCNLDIQWYKGDARVYGFVISVSKDNKKFKDV
                     LKTKSSGSTSNPESYDFSDVSARYVRITVNGNTQNTFASIAEINVNINANGGSNPPPP
                     PPPPGPSPGSDGVQMIYPTVAGGETWFFNPNNPVDGQFDSNGAEISKNSDGSWHLKPG
                     TTRMNVYTKSAGLLSDKQRSNLATYDYSALAQKGYWYQPTDWKNVEATGYFKVSSSSS
                     GDGISFVTRSVRHSNAIENGCGGSAYHNNIRFDGTFQYKKEMWHVNYDILPPTKNGIG
                     SIMNKWVGFKGVVYNLPDGTVKLESYVDKDNNNHWQKV"
BASE COUNT         1056 a          585 c          604 g          912 t
ORIGIN      
        1 ttatgtacta gaatcaacat tgtaataaat tatcaaatat ttgattaccc cgacagatga
       61 atctagctag gttattatgt caagaattaa catatttgta atttatcggc gaggttattc
      121 tgcattatag ttaacagtgt attaactaac atgtagatca atgaagagtt ttgtgtagat
      181 ataataaata acaaacctac ctcatcccta aatgataaac ctcaagcaag atcaagattc
      241 gatcgaatta ctcacagaat aaagagatga cattccaaag caagttaatt ggtactcatg
      301 ccatcgacca tatatgagcc tctagcatcc attacaggtt gtaatgggtg aatgcagcgt
      361 atcgatatga gagtatatta aatttcagtc atctaaatca cgatcactat tttgtttact
      421 gtagtgaata tctattgaca tagatatttt tcagattttt gttaaaaaaa atgcatgagc
      481 gatcagagac gctatataat tctcgcatta gctttcttgc tattcaatac tctcgtttta
      541 tcccaattag gaacccatac ttcttatatc tcagcactgc cagcaaagca ccaaacaaat
      601 agtactacag ccattacgac aactgatgtc ccaccggtat tgctatccta tggaggtcac
      661 acatacgaga tgcttccgtt tgtggttgta gatgaagatg gagttaagaa gctaaacttt
      721 ccacgtcttg cagatgaata caaacctgca gttaaaatcc catcagacaa aacttttaca
      781 tttgaattca ctaaaatgcc tagagaagtg aatgcatttg gaattgacta tgactctgac
      841 actaccgaag tgaatccatt ggtcaaaatt ggaaaacatc aatttagttt tggtaacctg
      901 catggaatac gtactcttga attgagagcc atttatgaca atggaaaata tgttacttat
      961 acggctcttg taaacataga taaagcaact aatgagatag gcgcaatttt ggatcatcag
     1021 tcgaattcaa ctgcaaataa aaccattatt cctgatatct tctcttcgca ttaatttcga
     1081 attatgatcg agttccctaa gccatttgcg acactatgaa ttcggaattt ataacaatct
     1141 aaacgtgact ttaagaagga tttttttctg tttttacttg aatgttgcat tttcaaggct
     1201 tgactttgac tttttagagt atttgggtca tttttatgaa acaatcagcc ataatttatt
     1261 ttcattaaca ataacactat tacctataga tgtctataat agatagacaa aataaacaat
     1321 tatcttaaag aatttcagaa cgtaagacca gtacaaaata tggctttgca taagtattaa
     1381 gaaagaatgt ttctgacgtg caaacagctg taagaaagtc agcagtgttc atgccaattg
     1441 aaaatataat caatagcgac aatcttggat cataccctct ctcacgtact atttctgcaa
     1501 tacagaggac atgaatagaa tgaaaaaagt aactgtcagc tattcgcaga gtatcctcgg
     1561 gttattcctt attgcaatat tattcatttc ttcatcaagt attggattgg ccttctctgc
     1621 gtcatcatcg gctacgacga atatagcatc ttgtaatgaa acacaaatct ttggagtatc
     1681 agcaagtgcg tcggataaga gcttccctgc ctccgcggtc ttggatttga atccacagac
     1741 gctctggtct acatacggca agggcgcctg gttgcaattg gatcttggca aggtaaagac
     1801 tgtatgtagt ctggatatag cgtggtataa ggggaatcag agaaatgtca actttattat
     1861 ttcagtttca aaagatgggt caacctacaa gaatgtcttt gattcaaaaa gcagaggaac
     1921 gacaacatca tttgaaagat acgacctcca agttgtagat gcgagataca taaagattac
     1981 tgttaatggt aatactcaga ataactatgc aactatagcc gaccttagag tgaacacctc
     2041 gagtcttgaa aatataaatc ctgttgaaca accaaatgta tccagcggat cagcagatca
     2101 gtgtaccaaa gccaagattt ccaaggtcac cgcctctgga cactataaga atgatgtaac
     2161 ttccaatgcg atagacaata atccacagac tagatggtct aaccagaaaa agccctcttc
     2221 aataactctg gatttgggaa attcaaaaac agtgtgcaat ttagatattc aatggtataa
     2281 aggggatgct cgtgtttatg gctttgtcat ttctgtttca aaggacaata agaaattcaa
     2341 agatgttctt aaaactaaaa gcagtggatc aactagcaat cctgaatcct atgactttag
     2401 tgatgtgagt gccagatacg taagaataac cgtcaatgga aatactcaga atacttttgc
     2461 cagtatcgca gaaataaatg taaatatcaa cgccaacgga ggttccaatc cacctcctcc
     2521 acctccacca ccaggaccaa gtccaggtag tgatggtgtg cagatgatat accctacagt
     2581 agccggtggt gagacttggt tcttcaatcc aaataatcca gttgatggcc agttcgacag
     2641 caatggggcg gagatcagta agaattccga tggtagctgg catttaaagc caggcactac
     2701 cagaatgaat gtttatacaa agagtgctgg attgctttca gacaagcaga gaagtaatct
     2761 ggctacatac gattattccg cattggcgca gaaagggtac tggtaccaac ccactgattg
     2821 gaagaatgta gaagcaactg gttatttcaa agtgtcttcc agtagcagcg gcgatggcat
     2881 ttcattcgtt actcggagcg tcaggcacag taatgcaatt gaaaacggat gtggtggttc
     2941 agcgtatcac aataatattc gatttgacgg aacgtttcaa tacaaaaaag agatgtggca
     3001 tgtaaattat gatattctcc ctcccaccaa aaatggaata ggatctatca tgaataagtg
     3061 ggtgggattc aagggagtag tttacaacct tccggatgga actgtaaagc tggaatccta
     3121 tgtagacaaa gataataaca atcactggca gaaggta
//
LOCUS       DASSIK010000247         6610 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_246093, whole genome shotgun sequence.
ACCESSION   DASSIK010000247 DASSIK010000000
VERSION     DASSIK010000247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6610)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6610)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6610
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_246093"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..647
                     /locus_tag="VFI64_04675"
     CDS             <1..647
                     /locus_tag="VFI64_04675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008705 - methionine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="vitamin B12 dependent-methionine synthase
                     activation domain-containing protein"
                     /protein_id="HET7242618.1"
                     /translation="YLNKKSLFVLSWGIRGEGAKDLGVEPERLYEEWKDRVVTEKLFS
                     PRIVYGYFRCHNQDRKLAVESKGETVVFDFPRSSKGKRLCITDYFGENDVVAFQAVTV
                     GTEVSLKIDELNSQDKYTDAYYLHGLAVETAEALAEWTHMRIKNELRIDSNQGLRYSW
                     GYPSCPDVSQHELVWKLIDPVKSGMNLTEAGQIIPEQSTAAIVVHHPEAEYFLL"
     gene            767..1090
                     /locus_tag="VFI64_04680"
     CDS             767..1090
                     /locus_tag="VFI64_04680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242619.1"
                     /translation="MAITDFYFACAVDEVPAYFTYEKESMLVIQSKPSAKLGKSDFEN
                     IEEFIPALISHESIHVVISRIENSQTSESLDNIEVIVETGGRRFQVSINNMLFANDQS
                     GIVFW"
     gene            complement(1155..1985)
                     /gene="trpA"
                     /locus_tag="VFI64_04685"
     CDS             complement(1155..1985)
                     /gene="trpA"
                     /locus_tag="VFI64_04685"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HET7242620.1"
                     /translation="MSFEENNRINKKFTDLKSRGESALICYVVGGYPDFSHSEKIISA
                     LVSGGADIIEIGIPFSDPIADGPTIQDASFKALTKGMTPDKCLLLTAKIRKKFPNLPI
                     LAMTYSNIPFKKGFKEFMCRAKITGIDGFILPDMSIEESEDYVKFAKELGLATVFLVS
                     PNTTRDRIKKIIKHSSGFVYVVSVFGTTGVRSSFAKYSITSIRNIKTIAGPTRNVAVG
                     FGISTSLHVKQMIDAGADAVIVGSAIIEKIKQDISSDNMERKLKLYATTMKRPCRQSH
                     "
     gene            complement(1996..3195)
                     /gene="trpB"
                     /locus_tag="VFI64_04690"
     CDS             complement(1996..3195)
                     /gene="trpB"
                     /locus_tag="VFI64_04690"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HET7242621.1"
                     /translation="MINLSKYPLNGKYGNYGGKYIPETLIPAIDELTEAYDKLKKDPK
                     FKKDFSSYLSHYAGRPTPLYFAKNLTTHAGGARIFLKREDLLHGGAHKTNNCIGQCLL
                     AKRMGKTRIIAETGAGQHGVGTAMAASMLGLKCEVYMGALDVKRQRLNVYRMELLGAK
                     VHTVNSGTRTLKDAINEAIRDWIVNVKDTYYLIGSVVGPHPYPMIVRDFQSIIGREIK
                     VQMNEITNSLPDILVACVGGGSNAIGTFYPFIDYSKVRLYGVEAGGMGMRSGRHAATL
                     GAGSEGILHGMRTYILQDKDGQIKNTHSISAGLDYPGVGPQHVHLKEIKRANYVAVTD
                     REALDAFHTLSRLEGIIPALESAHAVSYAMKLARKTGRPKDIVVTLSGRGDKDIEEVM
                     RFTKFKR"
     gene            complement(3241..4056)
                     /locus_tag="VFI64_04695"
     CDS             complement(3241..4056)
                     /locus_tag="VFI64_04695"
                     /inference="COORDINATES: protein motif:HMM:NF012444.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol-phosphate synthase"
                     /protein_id="HET7242622.1"
                     /translation="MSKFFNKNGFLSTLVANSYKAVDEGYYDAEKYHLDYHCAISFRK
                     YILSCTHVPIISEIKFSSPSRGTIVRPDDVDLIHLAEGLVSSGVVGLSILTQPYMFNG
                     SIDYVAKVRKAVSVPILMKDIIVSQVQIDAAKRIGADCILLIKTIFDDGMAEGTIEKF
                     MQYARDKDLYVLVEIHKESEFKEVMNSIKEPLLIGINNRNLNNLNVDLDVTKRLMQTF
                     QKGNKVIISESGISTPDQIRSLRPLGVDAFLVGTSIMESKDQISKVAELCHAE"
     gene            4210..5430
                     /locus_tag="VFI64_04700"
     CDS             4210..5430
                     /locus_tag="VFI64_04700"
                     /inference="COORDINATES: protein motif:HMM:TIGR02928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HET7242623.1"
                     /translation="MSVSRLINIVSFIIIQFNPNLPESEIFLDRSKLSARYIPRELPH
                     REKQISMIHTIFKNSYIKPEEFILTTIQVVGPAGIGKTSTVLKFSETLETEFKQSGLV
                     LKIAYINLKLQGGNKYAIYRFLLEKIAPELPAQGLSAEEMLRYLLTYLRENNTYALII
                     LDEIDYLVRSSKDSGIIYDFTRLNEFDLTKHCNIFGVIFIARSTEFYNRIDQAELSTL
                     GRVPIEFPPYSNKQISDILIRRCLESFNPNVVGSDIIDEVSAIAVSPQVNGDVRYALD
                     LILYAGQLAETQGSGRISLDQIRKVHGQSHPSITTEDIMGLPKNHLVALMAVVKTLGV
                     RKKQYVELKEIRLHALELADEYKMKKFEVEDYLDDLLDQNIIEMKSLKEIGINGAALN
                     ELGPILENQLKKKR"
     gene            5432..5731
                     /locus_tag="VFI64_04705"
     CDS             5432..5731
                     /locus_tag="VFI64_04705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242624.1"
                     /translation="MTEIDSKVIIENGIGTLGKIKIIRALAEERKMVTIYVLHKRTGL
                     KREDIKRNLKDLIRIDWVREKKMVNSMYYVNRENEFIKNLFTFFLNVGYIGLKID"
     gene            5940..>6610
                     /locus_tag="VFI64_04710"
     CDS             5940..>6610
                     /locus_tag="VFI64_04710"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HET7242625.1"
                     /translation="MRIRSDRQITPKFIFVTGGVMSGLGKGVITSSTAKLLQLLGLKV
                     SCVKIDPYVNYDAGTMNPIAHGEVFVTDDGGECDMDIGNYERFLDISMTEDHNITTGR
                     IYSEVIKAEREGKYLGQCVQIIPHVTDTIKDKLRKLATGRDVLVVECGGTVGDIESLP
                     FLEALRQMQLECGDSGALFIHVTLAPILDVVGEQKTKPTQHSVQELRRIGIQPYILAV
                     RCKNPL"
BASE COUNT         2031 a         1281 c         1300 g         1998 t
ORIGIN      
        1 aatatctgaa taaaaagtcg ttgtttgtct tatcttgggg gattcgtggg gagggtgcta
       61 aggatcttgg cgtcgaacca gaacgacttt atgaggaatg gaaagaccga gtcgtcacgg
      121 agaaattatt ttctccgcgt atcgtttacg ggtattttag atgtcataat caggatagaa
      181 agttagcagt agaatcgaaa ggtgaaacag ttgtcttcga ctttcccaga tcatcgaaag
      241 gaaaaaggct ctgtataaca gactactttg gtgaaaacga tgtagtagca tttcaggcag
      301 tcacggtggg gactgaagtt tccctaaaga ttgatgagct caattctcaa gataaataca
      361 ccgatgccta ttatttacat ggattggcag ttgaaactgc cgaggcattg gcagaatgga
      421 ctcacatgag gatcaaaaat gaacttagaa ttgattcgaa tcaagggctt cggtacagtt
      481 ggggatatcc aagttgtcct gatgtctccc aacatgaact tgtatggaaa ctaatcgacc
      541 ctgttaaatc aggcatgaat ttgaccgaag caggacagat aattcctgaa cagtcaacag
      601 cggcaatagt agttcaccat ccagaagctg aatactttct attgtaatct ggggtgagcg
      661 tgcgtataac acttgttatg caaaggagga aaaaataaat atccttgtat aaagtagcga
      721 atgcccactg tgaataatcg aaaaatttta gaatctctgt tgggaaatgg ctattactga
      781 tttttacttt gcttgcgcag tggacgaagt tccagcatat ttcacgtatg aaaaagaaag
      841 tatgttggtt attcaatcta agccttctgc aaaattagga aagagtgatt ttgaaaacat
      901 tgaagaattc atccctgcct tgatttcaca tgaatccatt cacgttgtaa tatcaagaat
      961 agaaaattct caaacttctg aatcactgga caacatagaa gttatcgtgg agacaggggg
     1021 gagaaggttt caagtcagta tcaacaacat gctatttgca aatgatcaat caggcatcgt
     1081 attttggtga tgattgtaga attggttgga tcatttcggt cttgattcaa aacaggtgga
     1141 ttatttaaaa tcattcaatg agattgtctg catggtcttt tcatggttgt tgcgtacaat
     1201 tttagctttc tttccatatt atcactggat atatcctgct taattttctc tataatagcg
     1261 cttccaacaa tgactgcgtc tgcgccagcg tctatcatct gtttcacgtg caacgaagtg
     1321 ctgatcccaa atcctactgc cacgttcctt gtgggtcccg caatggtctt tatgttcctg
     1381 atcgaggtaa tagaatattt cgcaaacgaa ctccttaccc ctgttgttcc aaaaaccgaa
     1441 acgacataca caaagcctga agaatgctta atgatttttt ttatcctatc tcgtgtggta
     1501 tttggagaca caagaaatac tgttgctaag ccaagttctt ttgcaaattt tacgtaatcc
     1561 tcggattcct cgattgacat atctgggagt atgaaaccgt ctatccctgt gattttcgca
     1621 cggcacatga attccttaaa gcctttcttg aatggaatat tcgagtaagt cattgcgaga
     1681 atagggaggt taggaaattt tttccgtatc ttcgctgtaa gtagaaggca tttatccggt
     1741 gtcatccctt ttgtcaaggc tttaaacgac gcatcttgaa ttgttggtcc atctgcaatt
     1801 ggatctgaaa atggaattcc tatttctatg atgtctgcgc caccgcttac caatgcagat
     1861 attatttttt cactgtggct aaaatcagga tatccaccca ccacataaca aatgagtgca
     1921 ctttctcccc ttgactttag gtcagtaaat tttttgttta ttcgattatt ttcttcgaaa
     1981 gacatttttt atgttctacc tcttgaattt agtaaatctc attacctctt cgatatcctt
     2041 gtctcccctt cctgaaagag tgacaacaat atccttaggc cttccggttt tcctcgccaa
     2101 tttcattgca taagaaactg catgagcgga ctcaagtgct ggtataattc cctcaagtct
     2161 tgagagtgta tgaaatgcgt ctagcgcctc acgatcagtg actgcaacgt aattagccct
     2221 ttttatctcc tttaagtgta catgttgagg acccactcca ggataatcga gccctgcgga
     2281 aatactatgc gtgtttttga tttgtccatc tttgtcttga agtatatatg ttctcatacc
     2341 atgcaaaatt ccttctgaac ctgcgcccaa tgtagcagca tgcctcccag atctcattcc
     2401 cattcctccg gcttccacac cataaagacg tacttttgaa tagtcaataa atgggtagaa
     2461 agtccctatg gcgttacttc ctcctcctac gcatgctact aagatgtcag gcaacgaatt
     2521 tgtgatttcg ttcatctgta cttttatttc tctacctatt atactctgaa aatctcgtac
     2581 tatcattgga tatggatgag gacccacgac agacccaatt agataataag tgtccttaac
     2641 attgactatc cagtctctta tggcttcgtt gatggcatcc ttaagggttc tcgtaccaga
     2701 attaactgta tgtacttttg cacccaataa ttccatacga tagacattaa gtcgttgtct
     2761 tttaacatct aacgctccca tgtagacctc gcattttaat ccaagcattg atgcggccat
     2821 cgcagtgcct accccatgtt gacctgcacc ggtttctgct ataatcctgg ttttgcccat
     2881 cctttttgcc agtaagcatt gtccaataca attattggtc ttgtgggcac caccatgtag
     2941 cagatcctct cgcttgagaa aaattcttgc tccgccagcg tgggttgtga gattctttgc
     3001 aaaataaagt ggcgttggcc ttccagcata atgggacaga taagatgaaa aatccttctt
     3061 aaatttggga tccttcttta acttgtcata ggcttccgtg agctcatcaa tagcaggtat
     3121 gagcgtttca ggtatgtatt tccccccata atttccatat tttccattta gcggatattt
     3181 agataaattg atcatgaacg tgccctcaag aatatcattt tatttcttac tcgatttaac
     3241 ttactctgca tgacataact ctgcgacttt agatatttga tctttcgatt ccatgatact
     3301 ggttcccact aagaatgcat caacacccaa tggcctcaaa cttcttattt gatccggagt
     3361 ggaaatccca ctctcgctga taataacttt gtttcccttc tgaaatgttt gcattagtct
     3421 tttggtaaca tctaaatcaa cgttaagatt attcaaattc ctgttgttaa tcccaattaa
     3481 aagcggttct ttgatgctat tcatgacttc cttgaattct gattctttgt gaatctctac
     3541 caagacgtac aaatctttgt ctcgtgcata ttgcataaac ttttcgatgg tgccctcagc
     3601 cattccgtca tcaaatatgg tttttatcag tagaatgcaa tctgctccaa ttctttttgc
     3661 agcgtcgatt tggacctgac ttactatgat atctttcatc aagattggca cgctgacagc
     3721 ttttcttact tttgcgacat agtctatcga accattgaac atgtacggct gagtcagtat
     3781 tgaaagacca actacacctg aacttactaa tccttctgca agatgaatta aatcaacatc
     3841 atccggacgt acgattgttc ctctggacgg tgaagagaat ttgatttcag atattattgg
     3901 aacgtgagta caagaaagga tatactttct aaatgaaata gcacaatgat aatccagatg
     3961 atacttttcg gcatcgtaat atccctcgtc aacggcctta taggaattag caaccagggt
     4021 cgaaagaaaa ccatttttgt taaaaaattt gctcaaagac tattgttctc accgcaatca
     4081 ttcgctatta atttcactag attggtctta ataatttatc agtttcgacg ggtgccaagt
     4141 ccatcacaca tatgtcatta gcaatttggc tggtaaacta tttacagcta attctgaaga
     4201 tggcagttta tgagcgtgtc tagattaatt aatatagtat ctttcatcat aattcaattc
     4261 aatccaaact tgccggagag cgaaatattc cttgatagat caaaattatc agctagatac
     4321 atacccaggg agcttccgca ccgggagaaa caaatctcca tgattcacac aattttcaaa
     4381 aattcgtata taaaaccgga ggaatttata cttactacaa ttcaagtggt aggacctgca
     4441 gggattggta agacatccac agtgctcaag ttttcggaaa cattggaaac agaatttaag
     4501 caatctggcc tagtattgaa aattgcgtac ataaacctta aacttcaagg cggaaataag
     4561 tacgcgatat acaggtttct gcttgaaaaa attgcaccgg aacttccagc tcaaggcctc
     4621 agtgccgagg aaatgttacg atatttatta acatatttga gagaaaataa tacatatgca
     4681 ttgatcatcc tcgatgagat cgattatctg gtccgatcta gtaaagatag tggcatcata
     4741 tatgacttta cccgccttaa tgaatttgac ctgactaaac attgtaacat atttggagtg
     4801 atttttattg caaggagtac tgaattttac aataggatcg atcaagcaga actaagcaca
     4861 ctaggtaggg tgcctatcga atttccacca tattctaaca agcagataag tgacatatta
     4921 attagaagat gtttggaatc gtttaatcca aacgtagttg gctcagatat tatagatgaa
     4981 gtttctgcta ttgcagtttc ccctcaggtg aatggagacg taagatatgc tcttgatctt
     5041 attttatacg ccggacaact tgcagaaaca caaggtagtg gaagaatatc cttggaccag
     5101 attcgcaaag tgcatggcca aagccatcca tcgatcacaa ccgaggacat aatgggtctt
     5161 ccaaaaaatc acctagtagc acttatggca gtagtaaaaa cgcttggtgt aagaaaaaaa
     5221 cagtatgttg aacttaaaga aattcgatta catgcactag aattagccga cgaatacaag
     5281 atgaagaaat ttgaagttga agactatctg gatgatttac ttgaccaaaa tataatagaa
     5341 atgaaatcac taaaggagat aggtataaac ggtgcagcgt tgaacgaact tggacccata
     5401 ttagaaaacc aattgaagaa gaaaagatag aatgacagaa atagacagca aagttataat
     5461 tgaaaacgga attggcacat taggtaaaat caagataatc agagcccttg ctgaagaaag
     5521 aaaaatggtt acgatttatg ttcttcataa aagaactggc ttgaaaaggg aagacatcaa
     5581 acgtaacctg aaggatctaa taagaattga ctgggttaga gaaaagaaaa tggtgaattc
     5641 catgtactac gtaaacagag aaaacgaatt tattaagaat cttttcacat tttttttaaa
     5701 tgtgggatat attgggctaa agatagacta atccaaactc tcaagtttcg atgagtttga
     5761 tccaatgaat ttaataaaat gatccaatca ttgttattac cgaccaagct aaccgatagt
     5821 atcgcttacc tatattcgca ttcatgaaag aatgacgcac ttatcgatgt ttatttgaat
     5881 ggaagttgca tatcgattag ttgaaaaagg attaaaaagg tgagaattca aagttctatg
     5941 tgcggataag atcagacagg cagattaccc cgaagtttat ttttgttaca ggaggtgtaa
     6001 tgtctggtct tggaaaagga gtaattacat catcgacagc caagctttta caattattgg
     6061 gtctgaaggt ctcttgcgta aagatagacc catatgtgaa ttacgacgca gggacaatga
     6121 atcccatagc ccatggagaa gtattcgtaa cagatgacgg cggggaatgc gacatggaca
     6181 taggaaacta tgagcggttt ctagatattt caatgactga agaccacaac attaccacag
     6241 gcaggatata ctctgaagtg attaaggctg agcgcgaagg aaaatacctt ggacagtgtg
     6301 tgcagataat accccacgta actgatacaa taaaggacaa actaagaaag ttggcgacag
     6361 gtcgtgatgt tttggtcgta gagtgcggag gaactgtcgg tgatatagag agcttgcctt
     6421 ttctagaagc tctaagacaa atgcaattgg aatgtggcga ctctggtgca ctattcatac
     6481 atgtaacatt agcccccatt cttgatgtcg taggtgaaca aaaaactaaa cccacacaac
     6541 atagtgtcca ggaattgcgg aggataggga tccaaccgta catacttgcg gtcagatgca
     6601 aaaacccgct
//
LOCUS       DASSIK010000248         2075 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1055782, whole genome shotgun sequence.
ACCESSION   DASSIK010000248 DASSIK010000000
VERSION     DASSIK010000248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2075)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2075)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2075
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1055782"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..357
                     /locus_tag="VFI64_04715"
     CDS             <1..357
                     /locus_tag="VFI64_04715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242626.1"
                     /translation="YAQGSIANSSNSSNATIAEKSDRINLRVEEVTLNKSPTNLVDVA
                     GKISNNNTFSVHDVKVMAVYFDNNGVVLGKSDKFVSSQSFVLKPGDVMPFQLLDVVAF
                     DKVDKYNMTAFGRVAP"
     gene            503..>2075
                     /locus_tag="VFI64_04720"
     CDS             503..>2075
                     /locus_tag="VFI64_04720"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HET7242627.1"
                     /translation="MKVRARLFAIIFSLVLASLISASLASLNAFSTGLILEVSKHLEH
                     DSVNWMDEISRAQHEKIRDLSFLSTQISNILRSNLTDEQKDAFLIDFQGSLNSNTSLF
                     VYDRNGNEILGTSKLPVGDNVSAYTSSKESILGKINEEILPAFYPNGSDWLKISTPIR
                     GNGGIIGGYVALYYPLVTLVGNNVSSLEPNLRFDLISKNGTILYSNAGVNTRDSTNFY
                     HDQPIFMKITNSTKSVENGIFPNLDTSGGDSIFIAVKQRSFPDYQGDGMFLITAVVTD
                     KAFGGVLDLRTIFIIITVLILAISTLVVFFVARSISKPITELDNAARRITKGDFAAPV
                     EIRTSDEIGELAQRFDEMRKSITTRTEEILKKDAELNEAYKSLIESDKSKDEFISMIS
                     HELKTPIVPIKLYSDMLLKTEFMGNLNEKQTKAIETMKKSVEKIEVLVSDMLDIHKLE
                     IERLRLSKTNIDVREIIDQAISEMLPLGKTKNVNLVSEISVTGTVYCDPKRIGQVICN
                     LIKNSIDFVPENGGKI"
BASE COUNT          705 a          375 c          410 g          585 t
ORIGIN      
        1 tatgcccaag gatctatagc aaactcttcg aattcaagta acgctacaat tgctgaaaag
       61 agtgatagaa ttaaccttcg agtcgaagaa gtcacactaa acaaatcacc caccaactta
      121 gtcgatgtag ccggcaagat aagtaataac aatactttca gcgtgcatga tgtgaaggta
      181 atggcagtat attttgacaa taatggggta gtattaggca aatctgacaa gttcgtttca
      241 agtcaatcat ttgtactaaa acccggagac gtaatgccat tccaactcct agatgtagtc
      301 gcatttgata aagttgacaa gtacaatatg acagcatttg gaagggtcgc tccttaacaa
      361 cggagcgaaa caaagattgt ttaattatga atcgatcgta cataaaataa taacggataa
      421 ttaggagata atttatctac taagctccta cattatcctt atgagaaaaa ggcatatact
      481 ctactagatt caattcattt cattgaaggt tagagccagg ctctttgcga tcatattttc
      541 actcgtactt gcaagcctta tctcagcatc actagcgtca cttaacgcct tctctacagg
      601 acttattctt gaagtttcaa agcacctgga acacgactca gtaaattgga tggatgaaat
      661 ttcgagagcc cagcatgaaa aaatcagaga tctgagcttc ttgtcgaccc aaataagcaa
      721 cattttgaga tctaacctca ccgatgagca gaaagatgca tttctcattg atttccaagg
      781 gtccctaaac tccaatacat ccctattcgt ttatgacagg aatgggaacg agattcttgg
      841 tacctcaaag ttacctgttg gtgacaatgt atctgcctac acatcctcta aggaatccat
      901 attaggcaag attaacgaag aaattctacc agccttctat ccgaatggaa gtgactggct
      961 taaaatctct actcctatac gtggtaacgg aggtataata ggtggatatg tggcacttta
     1021 ttatccatta gtaaccctcg tcggtaacaa tgtttccagc cttgaaccaa atttgagatt
     1081 tgaccttatt tcaaaaaatg gtacaatctt gtactctaat gctggcgtaa acacccgtga
     1141 tagtacgaat ttctatcatg atcaaccaat ttttatgaag ataaccaatt ctacaaagag
     1201 tgtcgaaaat gggatatttc caaatctcga tacttctggc ggggacagca tctttatagc
     1261 cgtcaaacaa aggtcctttc ctgactacca aggcgatggc atgtttttga ttactgcggt
     1321 ggtaactgac aaagcctttg gtggtgtatt ggatttgaga actatattta taataataac
     1381 agttttgata ttagcaatct caactcttgt tgttttcttt gttgcaagaa gcatttccaa
     1441 acccataacg gaattagata atgcggcacg aaggataaca aaaggggatt tcgctgcacc
     1501 ggttgaaatt agaacttccg atgagattgg tgaattagcc caacgatttg atgagatgag
     1561 aaagagtatc acgacaagga cagaagagat tctaaaaaag gatgctgaac ttaatgaagc
     1621 atacaagtcg ttgatcgaga gcgacaagtc aaaggatgaa tttatttcaa tgattagtca
     1681 tgagctaaaa actccgattg ttcccataaa gttgtattct gatatgctct taaagacaga
     1741 attcatggga aatctaaatg agaagcagac caaggcaatc gaaacgatga aaaaaagcgt
     1801 tgaaaagatt gaagtcctgg ttagtgacat gttagatatt cataaactcg aaattgaaag
     1861 attgaggtta tcgaaaacta acatagatgt gcgcgaaata atagatcaag cgatatctga
     1921 gatgttacct ctagggaaaa ccaagaatgt caatttagta tcagaaatat ccgtaactgg
     1981 gactgtatat tgtgatccaa agagaatagg acaagtaatt tgtaatctga taaaaaattc
     2041 tattgatttt gttcctgaga acgggggcaa gataa
//
LOCUS       DASSIK010000249         2159 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1237750, whole genome shotgun sequence.
ACCESSION   DASSIK010000249 DASSIK010000000
VERSION     DASSIK010000249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2159)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2159)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2159
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1237750"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(91..1764)
                     /locus_tag="VFI64_04725"
     CDS             complement(91..1764)
                     /locus_tag="VFI64_04725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HET7242628.1"
                     /translation="MISRASTNFDWIRFFSIDIIYYILFKDEFDDRGMVFQNESTFQK
                     FVKAGNEKLFNKKYEQAARSVRSEFGNTYSLIIAGKEVFATKSIAHRSPIDRRTILGY
                     VQMATPLHVNQAIEAAAHAFKTWGTTDYKYRIQIFRKIANLIRKRKFELAAWLTLENG
                     KNRYEAIADVDEALDFINYYIDDMIANDGFVLGNKNTKSGERNTSVMKPYGIWAIIAP
                     FNFPAAILVGMTIGALITGNTVVMKPASDTPIVGYKIAQIMVNAGLPQGVVNYITGPG
                     GEIGKLLVRNKKIAGFVFTGSKEVGYELVRNTSEFKPRPVIAELGGKNAAIVTQTADL
                     ERAAEGVVRAAFSYSGQKCSACSRIYVQRSIKSKFISKLVRRTKELTVGNPLNPETFV
                     GPLINSNSFKNFSRYSRLATKDGKVLVGGSLKKDNNLKYGFYAEPTIVDSLPKDHVLF
                     KKELFVPIICLSEYDRFDQALAMCNESDYGLTAGIYTKRKEEVKEFLNCIEAGVVYVN
                     RASSATTGAMVGRQSFGGWKDSGTTGKGTGGKYYLTQFMREQSQTIAEK"
BASE COUNT          613 a          471 c          359 g          716 t
ORIGIN      
        1 tgatatcaat attgtcatat tgttagaaac caatctcaat gtacaagttt actattttaa
       61 ttcatggcac atccaatcaa tatacgagct ctatttttct gcaatagttt gactttgctc
      121 tcgcataaat tgtgttaagt aatacttacc tccagttccc ttcccagttg taccggaatc
      181 cttccaacct ccaaatgatt gacgtcccac cattgccccg gttgtggcac tgctcgctct
      241 gttcacatac acgactcccg cttcaataca gttcagaaat tctttaacct cttcttttct
      301 cttcgtatat attcccgctg tgaggccata gtcagattca ttacacatgg cgagtgcttg
      361 atcaaaccta tcatattctg acaagcaaat aatcggcacg aacaattcct ttttgaataa
      421 tacgtgatcc ttgggtaaac tatcaacgat ggtaggttct gcatagaacc catatttcag
      481 attattgtct ttcttaagag aaccgcctac tagtactttt ccgtctttag tagccaatct
      541 tgaataccta ctgaaattct taaaggagtt tgaatttatt aaaggaccaa caaaagtttc
      601 cggatttaga gggttcccaa cagttaattc cttagttctt cttacaagtt ttgagatgaa
      661 ttttgatttt atgcttcttt gcacatatat acgagagcac gcgctgcatt tttgtcctga
      721 atatgaaaac gctgctctta caacaccttc agctgctctt tccaaatccg ctgtttgggt
      781 aacaattgcc gcgttctttc ctcccagttc agcgataact ggtcttggct tgaattcgct
      841 tgtattccta actaattcat agccaacctc cttagagccg gtaaagacga atcctgcaat
      901 ttttttattc cgtactagta gcttaccaat ttcaccacct gggccagtta tatagttaac
      961 aacgccttga ggcagccccg cattcaccat gatctgggct atcttgtatc ccactatagg
     1021 cgtgtcactg gcaggtttca tgacaactgt attgcctgtg ataagcgcac caatagtcat
     1081 tcctaccaat attgctgccg gaaaattaaa tggcgcaatt atagcccaga ttccataggg
     1141 cttcatcaca ctagtgttcc tttcacctga tttagtattt ttattgccca agacaaatcc
     1201 atcgttagcg atcatatcat ctatgtagta gttgataaaa tctagtgctt catccacatc
     1261 ggcaatagct tcgtatctat tttttccgtt ctctaatgtc aaccacgctg ctaattcaaa
     1321 ttttcgcttt ctgataagat ttgcaatttt tctaaagatt tgtattctgt acttgtaatc
     1381 tgtggtaccc catgtcttaa atgcatgcgc tgcggcttca atagcttggt tgacgtgcaa
     1441 aggagttgcc atctggacat agcctagaat tgtcctgcga tcaatgggcg atctatgagc
     1501 aatactctta gttgcaaaca cttctttacc ggcaattatt aaagagtatg tattcccaaa
     1561 ttccgaccga acggatctag ccgcctgctc atatttctta ttgaataatt tttcgttacc
     1621 tgcctttaca aatttctgga aggtactttc attttggaac accatacctc tatcatcaaa
     1681 ttcgtcctta aatagtatat agtatatgat atctatcgag aagaatctta tccaatcaaa
     1741 attggtcgat gctctgctta tcaatacaat ttcaaggttg aggaaaaact gataactgaa
     1801 agctgacgta atattgcaaa tatgtaaata ataaggatat gattaaatta caaacattac
     1861 tgataattag tatagttaaa gaagcagaga cacatcatct aatgattaga tatgattgta
     1921 acatattctt gaatttgcca cgatcccata tcgcaatact ggatagcaag acccccttga
     1981 ttaagagacg gcggtcatga gcaaattgct gatcagaata aatactgtta tatccattcg
     2041 ggttaacgaa ggaagactcc tcaaatgagt acactttttc tatcaattag agttcgatgt
     2101 taaagttgtg tctgacactc aaactgcaag acgatttctt tctgctatca tttaggttc
//
LOCUS       DASSIK010000250         3432 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_148279, whole genome shotgun sequence.
ACCESSION   DASSIK010000250 DASSIK010000000
VERSION     DASSIK010000250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3432)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3432)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3432
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148279"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..784)
                     /locus_tag="VFI64_04730"
     CDS             complement(<1..784)
                     /locus_tag="VFI64_04730"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HET7242629.1"
                     /translation="MTTLRVKDLTKRYGNVTALEKFSLEISSGEFMVLLGPSGCGKTT
                     VIRCIAGLTNPTDGEIYIGNELVNDLPPKDRDVAMVFQNYSLYPHMNVYDNIAFPLKM
                     RKTERREIVERVANIAELLNIGHLLNRKPREISGGQMQRVALGRALVRKPRIFLMDEP
                     LSNLDAKLRTDMRVEIKKLQRKLQITTLYITHDQVEAMSMADNIGVMDSGKLQQLCNP
                     DEIYNNPANKFVASFIGMPPMNFLECNLVRQPSQIFFTFASGS"
     gene            1048..2436
                     /locus_tag="VFI64_04735"
     CDS             1048..2436
                     /locus_tag="VFI64_04735"
                     /inference="COORDINATES: protein motif:HMM:NF024808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HET7242630.1"
                     /translation="MTKFDPFGKYFSAIQNDSFGFVSQNFKLILICGLVLSILAAASL
                     TPFMTAQSQQGKQVTLTAIVAEPKDRWDTLFANALVKLREKHPDMTINIDSRILPYAD
                     TRKQILTSMAGKTPIDIVSVDQIWLGEFAEAGFLSDLSSLAHAWNRSSEWYKTNWDGG
                     IYNDKVYGIWAWTDVRSMWYWKDLLNQTGVNPDSLKTWNGYLASAKKMEAALKGNGTQ
                     AMHLVGASHSPDMWYPYLWMLGGKIVDQRSGHPQKGTYWFPTYNSTEGVKALQFLKDQ
                     VKAGIKPQIDHFWGQEFADKKFAVMLEGSWLLGHFPPDEWKGLDQRIGMIPAFPVPKD
                     GDTSATMMGGWMLSIPETSTNRDLAWELLTIMVQPDVLAPVLEKYGYLPTQKPIGEGA
                     YSAQLNATIPYYKEMISMIGIGHSRPSIPEYPQIADNIRQAIDEVYLGIKEPKQALDD
                     AAKKSAQVLGWS"
     gene            2634..3395
                     /locus_tag="VFI64_04740"
     CDS             2634..3395
                     /locus_tag="VFI64_04740"
                     /inference="COORDINATES: protein motif:HMM:NF012738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HET7242631.1"
                     /translation="MRDWKYVGPDNFLDVLTDPGFHSSLKVSILFVGGSVTLQFFLGL
                     VLAVVLNQQIRGSNTLRALFIIPWTVSAVITGFSFKFIFNDSFGILNYGLEQMGLNPV
                     SWLSDPSMVLWTIVIANMWHGTPFTMLFLTAGLFSISPVVYEAALIDGATKTKSFFHI
                     TLPLLKPFILINLILITMWSVNFFDLILVMTNGGPLFASTTASLYMYRQAFEFGLLSK
                     GSVVGLFLIGVNLVLAYSYLKLFRKDGTEVEVARV"
BASE COUNT          985 a          711 c          711 g         1025 t
ORIGIN      
        1 ggctgccact ggcaaatgta aagaaaatct gggagggctg tctaaccaaa ttacactcta
       61 aaaagttcat tggaggcatg cctatgaaac ttgccacaaa cttgttggca gggttgttat
      121 atatttcgtc tggattacaa agctgttgta gttttcctga atccatcacc cctatattgt
      181 ccgccatgct cattgcttct acctgatcat gtgtaatgta tagtgtagta atttgcaatt
      241 tcctctgtag tttcttaatc tctactctca tatcagtccg taatttggca tcaaggttac
      301 tcagcggttc gtccattaag aaaatccttg gttttctaac gagtgctcta ccgagtgcaa
      361 ctctctgcat ttggccccca ctaatctctc gtggttttcg gttaagaaga tgacctatat
      421 tgagaagttc tgctatgttc gccacccttt cgactatttc ccgccgttcc gttttcctca
      481 tctttaacgg aaacgcgata ttatcataga cattcatgtg agggtagagt gaatagtttt
      541 gaaataccat tgccacatcg cgatcctttg gcggaagatc gtttactaat tcatttccaa
      601 tgtaaatctc accatctgta ggattcgtca gtcctgcaat gcatcttatg acggtagttt
      661 tcccgcagcc cgacggacca agaagaacca tgaattcccc tgaacttatt tcaagagaaa
      721 atttttctag cgcagtaaca ttgccatatc tcttagtgag atcttttacc cgaagcgttg
      781 tcaaaataac cagctgctgc ttggagaaat atattcattt taatagaata ttaattttct
      841 tccaacattt catacatgct cctttatttt ctaaactgga ctagaattgg ttaaattttt
      901 cgaaaaagct ttttcaagtt aaggtgtaag tagatctggt taaccatctg ccgatggact
      961 acaataacaa cccccgaaga aggcaagaac agtcaggaag aacagcatga ataaatactt
     1021 aaaagcataa aattcgctag gtatgcgatg accaaatttg atcccttcgg taagtatttt
     1081 tctgctatcc agaatgatag ttttggcttt gtatcccaaa acttcaagct cattctgata
     1141 tgtggcttag tactttcgat ccttgctgcc gctagcctaa ctccattcat gacagctcaa
     1201 tctcaacaag gcaaacaagt tactttaact gcgatagtag cggaaccaaa agatagatgg
     1261 gatactttgt ttgcgaatgc actagtgaaa ctgagggaaa aacatcccga tatgaccata
     1321 aacatagact ccagaatatt gccatatgcc gatacccgaa agcagattct gacatcgatg
     1381 gcaggaaaaa ctccaatcga cattgtttca gtagaccaga tatggcttgg tgaattcgca
     1441 gaagcaggct tcctgtcgga tttgtcaagt ttagcacatg catggaacag atcttctgaa
     1501 tggtataaga ctaattggga cggtggcatc tataacgata aagtatatgg aatttgggcc
     1561 tggactgatg tcaggtccat gtggtattgg aaagatctcc tgaatcagac aggagtaaac
     1621 cctgactctc taaagacatg gaatgggtat ctggcctcag ccaagaagat ggaggctgca
     1681 ctcaaaggca atggaaccca agccatgcat cttgtcggtg ctagccattc tcccgacatg
     1741 tggtatccat atctgtggat gcttggtggc aaaatagtcg atcaaaggag cggccatccg
     1801 caaaagggta cctactggtt tcctacctat aacagtacag agggtgtcaa agcacttcaa
     1861 tttttgaaag accaggtaaa agcgggaata aaacctcaaa tagatcactt ctggggccaa
     1921 gagtttgcag acaaaaaatt tgctgtgatg ttggaaggat catggttact tggacatttt
     1981 ccgccggatg aatggaaagg ccttgatcag cgtattggta tgatacctgc atttccagtc
     2041 cccaaagatg gcgatactag tgcaacaatg atggggggat ggatgcttag tattcctgag
     2101 acctccacaa acagagatct cgcttgggaa ttgcttacga taatggtaca acctgacgtc
     2161 cttgcgccag tgctagaaaa atacggatat cttcccactc aaaaacccat aggtgagggg
     2221 gcatattctg cccaactaaa cgccactata ccatattata aagaaatgat ctctatgatt
     2281 ggaataggac atagcaggcc aagcattccg gaatatccac agatagcaga taatataaga
     2341 caggcaatcg atgaagtcta tcttggcatc aaggaaccca aacaagcgtt agatgacgca
     2401 gcgaaaaaat ctgcgcaagt acttggctgg tcatagtact gcccaattta aagtacttgg
     2461 atttttattc taacatctcc gggttgtgat aactagtact ggagaggata acacagagac
     2521 tacagcccta tatcctccta gtaccatctc ttttaatact aactgtattt cttttgtttc
     2581 cacttttgtg gaacgtatat ctttcaatcc ataatgtatc tctttcaact attttgaggg
     2641 actggaaata cgttgggcct gataatttct tagatgtctt gactgatcct ggttttcatt
     2701 catcacttaa ggtcagtata ctattcgtag gtggatcggt aacacttcag ttttttttgg
     2761 ggctggttct tgctgtggta ttgaatcaac aaataagagg ttccaacacc ctgcgtgcct
     2821 tgttcataat accgtggaca gtttctgcag ttataacggg cttttcgttc aagttcattt
     2881 tcaacgatag cttcgggata ttaaactatg gtctggaaca gatgggattg aaccctgttt
     2941 cttggttatc agatccaagt atggtattat ggacaatagt tatcgcaaac atgtggcatg
     3001 gaacaccatt tacgatgctg tttttgactg ccggattatt ttcgattagt ccagtcgttt
     3061 acgaagcagc gcttatagac ggagctacga aaaccaaaag cttttttcac ataacacttc
     3121 cattgcttaa gccatttatt ctcattaatc tcatattgat aaccatgtgg tcagtcaatt
     3181 tctttgattt aatactagtc atgactaacg gaggaccact tttcgcgagt acaaccgcat
     3241 ctttatacat gtacaggcag gctttcgaat ttggactgtt atctaaagga tccgttgtag
     3301 ggcttttcct cataggtgtc aatttagtgt tggcatattc ttacctcaaa cttttcagga
     3361 aggacggaac cgaggttgaa gttgctcgag tgtgaggatg gtacctgcca taaaaaaatc
     3421 ttgctcaggc aa
//
LOCUS       DASSIK010000251         4214 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_443800, whole genome shotgun sequence.
ACCESSION   DASSIK010000251 DASSIK010000000
VERSION     DASSIK010000251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4214)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4214)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4214
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_443800"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            98..466
                     /locus_tag="VFI64_04745"
     CDS             98..466
                     /locus_tag="VFI64_04745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242632.1"
                     /translation="MTIKTFSTDESKLKPILSKKSALPHRPLADLFPCFATLHPAEAA
                     TIAAAVLMLNVSIKSPPVPQLSIREVDVSVNTETDSCFSTSLMIFISLFVVPAAVKAV
                     KKEAITASDISTEKTDLTAL"
     gene            complement(545..1135)
                     /locus_tag="VFI64_04750"
     CDS             complement(545..1135)
                     /locus_tag="VFI64_04750"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004049 - anthranilate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046820 - 4-amino-4-deoxychorismate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HET7242633.1"
                     /translation="MNKILVIDNYDSFVYNLAQLLGELGTLPNVIRNDKITITEIRKI
                     SPDGIVISPGPGHPADKKSFGVCSEVITALGPHVPILGVCLGHQGIAQVYGGKVINAK
                     RVVHGKTSSIEYFGDSLFDELVNPFVATRYHSLVVDRKSIPPCLEITATSLDDGEIMG
                     LQHRKFPIHGVQFHPESVLTKDGSKILLNFISLLKR"
     gene            1315..2361
                     /locus_tag="VFI64_04755"
     CDS             1315..2361
                     /locus_tag="VFI64_04755"
                     /EC_number="1.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II glyceraldehyde-3-phosphate
                     dehydrogenase"
                     /protein_id="HET7242634.1"
                     /translation="MVKVFINGYGNIGRRIATAFSQDKEIQFIGVGKYSVDDRVKDAV
                     DRNFPLYVPANMVSKFKEKGFPVSGNISNAIMESDIVIDAAKDGYGYDNKVNLYEPLN
                     KAAIFQGGEDNTGVRKVADVIHNSRVNYKDMFKKKYVIQGSCNVSGMGRILQPMIEKY
                     GSEIERYDVTLIRRSADLEDLKEVKDSIEWDKNPHHQDDVKSFLPTVNLYVEAYKVPS
                     RMMHLHQMTVRFKSAAPDKESFLDIYEKEFGVAILSNARGTGDIRKKAIDLGFEHGDT
                     NMVHIHSDTIRTQADTLKLLYSDDQTGMVIPENYLLFQSMLYGRPARDAYRRTEAIFH
                     IDKKRKTLEEEFKA"
     gene            2464..2747
                     /gene="rnpB"
                     /locus_tag="VFI64_04760"
     ncRNA           2464..2747
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="VFI64_04760"
                     /product="RNase P RNA component"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00373"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="archaeal type; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00373"
     gene            2816..3790
                     /locus_tag="VFI64_04765"
     CDS             2816..3790
                     /locus_tag="VFI64_04765"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HET7242635.1"
                     /translation="MVLPFLFCDSSRSLELSKRYGYPTWMISRFLEIIPDTQKLLEAL
                     ASKPRKYIRINTLKTKVEDLVERLLAIGFDIKQTILPEVFEITREKFSLGSTIEYLLG
                     YYYIQDLSSCLAVEELDVSAEQRVLDMACAPGGKTTYLAQKMDNNGVLIALDPSRKRI
                     RSTFFNLMRCGVRNTLVYQMDATNVFRLGIRYDRVLLDAPCSCEGVISKDRSLLDNHY
                     PGLINKCAERQRALIRAAIKVTKPGGLIVYSTCTFAPEENEITLDSILDSYDNIEIEP
                     VAIGENGLTTFGRFTLNSSLKDTKRLYPHIHGTLGFYIAKLRVKNVSL"
     gene            3777..>4214
                     /locus_tag="VFI64_04770"
     CDS             3777..>4214
                     /locus_tag="VFI64_04770"
                     /inference="COORDINATES: protein motif:HMM:NF015610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242636.1"
                     /translation="MCLYRKTSLHERTVLRRAFSKWDVFEYFKDKLIYVRTNNVGRKQ
                     IFFLPSEIMMTDKQPLYAGLLIGELGKQFSPSIQMSQIIAKEGKNFPSIKVNSKGETM
                     VVYGRDVFVDSIIEHNTHRENEMVIILNQRNEAIGIGRTRNKSN"
BASE COUNT         1354 a          801 c          890 g         1169 t
ORIGIN      
        1 gaggcggcgg cgctcggcgt gccgatggtc gccgcgcggg cgggcgggat ggtcgacgtg
       61 ctcgaggacg gccgcaccgc gttcctcttc gatcccggtg acgattaaaa cattctccac
      121 cgacgagtcc aagttgaaac caattctttc aaaaaaatca gcacttccac acaggccgct
      181 tgcagaccta ttcccgtgct ttgcaacttt acatcctgca gaagcagcca ctatagcagc
      241 tgccgtactt atgttaaacg tatcaatcaa atcgccaccc gttccacaat tatcaataag
      301 agaagttgat gtatctgtga acacagaaac agattcttgt tttagtacgt ctctaatgat
      361 ctttatttcc ctcttcgtgg ttccggctgc agttaaggcg gtcaaaaaag aggcaattac
      421 tgcgtcagac atatcaaccg aaaagaccga tttgactgcg ttatagaaat cttcatcttt
      481 caagtcgatt ttgtagacaa gtttcctcgt cacgcttctt acaacatctt cggttgacat
      541 tcacttacct ttttagaaga ctaataaaat tgagaagaat tttcgatcca tcctttgtaa
      601 gaacagattc gggatgaaat tgaacaccgt gtatagggaa ttttctatgc tgtagtccca
      661 ttatttcgcc atcgtctaac gatgttgctg taatttcaag gcaaggagga atactcttcc
      721 gatctactac aagagagtgg taccttgttg ccacgaaagg atttacaagt tcgtcgaaca
      781 aagaatctcc aaaatactcg atagagctgg tcttaccgtg cactactctt ttcgcattta
      841 taactttccc accataaacc tgagctatcc cttgatgacc caaacaaact cccaaaatgg
      901 ggacatgggg gcccaaagca gttatgactt cgctgcatac tccaaacgat tttttgtctg
      961 ccggatggcc tgggcctggc gagataacaa tcccatctgg acttattttt cgtatttcag
     1021 taattgtaat tttgtcattc cgaataacat ttggtaaagt accaagttca cccaaaagtt
     1081 gcgccaaatt gtacacgaat gagtcataat tatcaattac caagatttta ttcaaatgca
     1141 tcactaacta tgccatgaaa gacatttttg ctaatctatt ctatttgtgt ctcgaggttt
     1201 atttatagat tataaatttg attccatatt tagctaatta ttcttaaaaa aagcagtaat
     1261 ggggcgtaca atacaataaa atattcgtta cattctctgt aatgtcatct tcatatggtt
     1321 aaggttttca taaacggcta cggaaacatc ggccgaagga ttgcaactgc tttttctcaa
     1381 gataaagaaa ttcaattcat aggggtggga aagtattcag ttgatgatcg agtcaaagat
     1441 gcggttgaca gaaactttcc tttatatgtc ccagcaaata tggtctcgaa attcaaggaa
     1501 aagggatttc ctgtctcagg aaacatatcc aacgcgatca tggaaagtga tattgtcatc
     1561 gatgcggcaa aggatggata tggttatgac aataaagtta acctatacga gcccttgaac
     1621 aaagcagcta tatttcaagg aggagaagat aatacgggag ttaggaaagt agctgatgtg
     1681 attcataatt caagggttaa ctacaaggat atgttcaaga aaaaatatgt gattcaagga
     1741 agttgcaacg tttcgggaat gggaaggatt ctccagccta tgatcgagaa atatggaagt
     1801 gaaattgagc gatatgatgt aactctcatc agaaggtcgg ccgatctgga agatttgaag
     1861 gaagtcaaag actccatcga atgggataaa aatccccacc atcaggacga tgtaaaatca
     1921 tttctaccaa cggtgaattt gtatgttgag gcatataagg ttccctcaag gatgatgcac
     1981 ttgcatcaga tgacagttag attcaagagt gcggcgccag ataaggaatc atttctggat
     2041 atctacgaga aagaatttgg tgtcgcgatc cttagtaatg caagaggaac tggagacatt
     2101 cgtaaaaaag caatagatct tggatttgaa cacggagata ctaatatggt acatattcac
     2161 tcagacacaa tcagaacaca agctgacaca ctgaaacttc tatattctga cgatcagaca
     2221 ggaatggtaa tccctgaaaa ttaccttctt tttcagtcca tgttatatgg aaggcctgcc
     2281 cgcgatgctt accgtcgaac agaagcaatt tttcacatag ataaaaaacg aaagacactt
     2341 gaagaagaat tcaaagccta ggaaagattc gctgggacat ttattggctc acaaatcaac
     2401 tgataacaac aaggtacatg cacaggaagt aaatttattt aacgtttaat ttttattatt
     2461 cacgtgagct agtgcacggg ttactcgaaa gagaggaaac tcctccctca taataggcac
     2521 tcgaattagt gataattagc tggagacagc gggcaacgaa acagaaagga aatccagtca
     2581 gtcaaagatg atagtgatgg caaatagcct gaagatactg atgctggaat gaaaccgtcg
     2641 acccgggtgg agcaaggcca aacagggcca aacattccta tatgtgccca ggttggccgc
     2701 tgagcggaat cccgtctaaa acagaaggag ggttacggct agcacacgtt ttttctattg
     2761 atcaaaattg gcaaggcatt gtaataaatt aaatggagga attcaagtct tcagcatggt
     2821 attgccgttt ctgttttgtg attcatcccg atctcttgaa ttatcaaaga gatatggtta
     2881 ccccacatgg atgatctcaa gatttttaga gatcattccc gacacgcaga agttgctaga
     2941 ggccctagca tcaaagccta gaaaatacat taggataaat acattaaaaa caaaagtcga
     3001 ggaccttgtt gaaagacttt tagccattgg atttgatata aaacagacaa tccttcctga
     3061 agtttttgaa attacaagag aaaagttctc tcttggttct acaatcgaat atcttttggg
     3121 ttattattac atacaggatc tcagttcatg tctcgctgtc gaggaattag atgtttcagc
     3181 tgaacaaaga gtccttgata tggcatgtgc gccaggtggc aaaactacat acttggccca
     3241 gaaaatggat aacaatggtg tattgattgc tctcgatcca agtagaaaaa ggatcaggag
     3301 cacattcttt aatttaatgc ggtgcggtgt caggaacaca ctcgtctatc aaatggatgc
     3361 tacaaatgtt tttcgtttag gaatcaggta tgatcgtgtc ttacttgatg cgccatgcag
     3421 ttgtgagggt gtcatatcaa aagacaggtc attactagat aatcactatc caggattgat
     3481 aaataagtgt gctgaaagac agcgtgcgtt aattcgtgct gcgattaagg ttaccaaacc
     3541 aggaggttta atagtttatt ctacctgtac gttcgcgccc gaagagaatg aaattacttt
     3601 agatagtata ctagatagct atgacaatat agaaattgag ccggtagcca ttggcgaaaa
     3661 tggcctgaca acttttggcc gattcacttt gaattcgtct ctgaaagaca caaagagatt
     3721 atatcctcat atacacggaa cattaggatt ttacatcgca aaattaaggg taaaaaatgt
     3781 gtctttatag aaagacttca ctccatgagc gcactgttct tagacgagca ttttcaaaat
     3841 gggatgtatt tgaatatttc aaagataagt taatctatgt aagaaccaat aatgttggca
     3901 gaaaacaaat atttttttta ccttcagaga ttatgatgac agacaagcaa ccgctgtacg
     3961 cagggttgct tataggtgaa ttgggaaaac agttctcgcc gtctatacaa atgtctcaaa
     4021 taattgcgaa agaaggtaag aactttccat caataaaagt gaactccaag ggggaaacaa
     4081 tggttgtcta tggtagagac gtatttgtag attccattat tgaacacaac actcataggg
     4141 agaacgagat ggtgataatc ttaaatcagc gcaatgaggc cattggaatt ggaagaacac
     4201 gaaataaatc gaat
//
LOCUS       DASSIK010000252         3111 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1144729, whole genome shotgun sequence.
ACCESSION   DASSIK010000252 DASSIK010000000
VERSION     DASSIK010000252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3111)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3111)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3111
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1144729"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(247..2607)
                     /locus_tag="VFI64_04775"
     CDS             complement(247..2607)
                     /locus_tag="VFI64_04775"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HET7242637.1"
                     /translation="MPQKIEEKTWNSKFEQEILTRWEKCKIYNFSADGRKHVFVIDTP
                     PPYPSGRPWHIGAAAHYAQIDMIARTGRLLGNNVLFPIGIDRNGLPVEIYTEKKYKIR
                     MRSMDREKFLDLCKVALDDLEKEMIDIMKALGLSGDFEKYYRTDSDEYRVMTQNTFLK
                     LWNKGLVYSSNRPNNYCTDCGTTIADAEIIYEERNTKLIYMKFKIKESADEIVIASTR
                     PELLFACQCVMVNPNDKRYEKVIGKTVILPLFNREVKIIAHHSAKPEFGTGAVMVCSY
                     GDKNDVQIFRELGLEEIVAINDNGLMTDNAGVYANLKINQARERIIEDLKKLGSIDKE
                     EYIMHRTPLCERSKSPVEIIPMQDYYLKQLDFIPKLREFALKIEFHPEVHRQILLNWL
                     DSVVIDWPISRRRFYGTEIPIWYCKKCNTPNLPQPGKYYRPWREEPPFNKCQNCDSSE
                     FVGEVRTFDTWMDSSITPLFVTKYDRDEKFFSYTYPTKIRPQAKDIVRTWLFYTMLRC
                     YQLTGQLAWSDVWIMGYGVDERGEKMSKSKGNVIDPFPIIAKYGADAFRFWSAAEANL
                     GQDFRCSEQKIAEAQKFLTKLWNVGRFMSSFDVTPMSPGDLLPTDRWILAELARLVDR
                     CLKGYREFNFFIPSTSLKEFTWNLFASHYLELAKSRAYNKNEPSGYLSALYTLHKCFS
                     TILLLLSPICPFITEKLWTTLYSSNSIHTQPLPVVENTFEDMCQYSYLITEFNSMVWN
                     KKKETISKNTGRSLSLRDPIRINVPDELRQFKSDLIEMHNLQTSSS"
BASE COUNT          890 a          627 c          545 g         1049 t
ORIGIN      
        1 gataataatg ggcacaaact tttttttgga ccagattcca gattttactg ggataaggtc
       61 acactgccaa ttttactcga gtcaaaatat aatacaacac cagctcaatt attttgaaac
      121 tcaaatgata ttagataatt catgacaaga aatatcatag cacaactaac tgtgtatcca
      181 gtttatattt tgctagttca atccataaaa tatggatgac aaggcatata gaaaaccttg
      241 ctacattcag gatgacgatg tctgcaaatt gtgcatttct ataagatcac ttttgaattg
      301 tctcaactca tccggcacgt ttattcttat aggatctctt aatgaaagtg acctgcctgt
      361 atttttggag atagtttcct ttttcttatt ccagaccatc gaattgaatt ctgttatcag
      421 gtaagagtac tgacacatgt cttcgaaggt attttcaaca actggtaaag gctgtgtgtg
      481 gatactgttt gaagaatata gtgtcgtcca taacttctct gtaatgaagg gacagatagg
      541 ggagagcaga agcaatatag tggaaaaaca cttgtgcaaa gtgtacagtg ctgacaaata
      601 tcctgaaggc tcatttttgt tgtatgctcg tgactttgcc aattccagat aatgtgaagc
      661 aaacagattc catgtaaatt cttttaacga tgtggacggt atgaagaaat tgaattctcg
      721 gtagccctta aggcatcggt caaccagtct tgccaattct gccaaaatcc atctgtcagt
      781 aggtagaagg tcaccgggac tcatcggggt tacgtcaaag gatgacataa acctgcctac
      841 attccatagc tttgtcaaga acttttgtgc ttcagctatc ttttgttccg aacatctgaa
      901 gtcttggcct agatttgctt ctgctgcgga ccaaaatctg aatgcgtcag ctccgtattt
      961 cgctataatt ggaaagggat cgataacatt acctttactt ttactcattt tctctccccg
     1021 ctcatccaca ccatatccca ttatccaaac atcagaccat gctaattgac cagtcagttg
     1081 atagcatcgt aacatcgtgt agaataacca tgttctaact atatccttgg cttgcggtct
     1141 gatttttgtt ggatatgtgt aggagaagaa tttttcatct ctatcatatt tagtaacaaa
     1201 aagaggagtt atactagaat ccatccatgt atcgaacgtt cttacctccc ctacaaattc
     1261 tgaagaatca caattttgac acttattgaa tggaggctct tccctccaag gtctataata
     1321 ttttcctggc tgcggaagat tcggagtatt acattttttg cagtaccata ttggaatttc
     1381 agtaccataa aatctccttc tggaaatcgg ccaatctata accacggaat ctaaccaatt
     1441 caacaagatc tgtctgtgaa cctcaggatg aaattcaatc ttcaacgcaa attctcttaa
     1501 ttttggaata aaatccagtt gtttcagata gtaatcttgc attggaatta tttctacggg
     1561 tgacttactg cgttcacaga gtggggttct atgcattata tactcctctt tatcgataga
     1621 gccaagtttt tttaaatctt caattattct ttctcgtgct tggttgatct taaggttggc
     1681 atagactccc gcattgtccg tcattaagcc attatcatta atagcaacga tctcttctaa
     1741 tccaagctct ctaaatatct gcacatcatt cttatcacca taactacaca ccattacagc
     1801 tccggttcca aattccggtt ttgctgaatg gtgtgcaatt atttttacct ccctgttgaa
     1861 aagcggtaaa atcactgttt tcccaatcac tttctcatac cgcttgtcat tgggattaac
     1921 catcacacac tgacatgcaa ataggagttc tggccttgta gatgcgatta caatttcgtc
     1981 tgcactttct ttgattttga atttcatata aattagcttt gtgtttcttt cttcgtagat
     2041 tatctcagcg tcagctatcg ttgtcccaca atctgtacaa taattgttag gtctgtttga
     2101 agaataaact aaccctttgt tccataactt taggaaagtg ttctgggtca tcacacgata
     2161 ttcatctgaa tctgttctat agtacttttc gaagtctcca cttaatccca gggctttcat
     2221 gatgtcaatc atttcttttt ccaaatcgtc aagtgcaacc ttacatagat ccaagaattt
     2281 ttccctatcc atacttcgca tcctaatttt gtatttcttt tcggtataga tctctaccgg
     2341 aaggccattt ctatcgattc ctattggaaa aaggacatta tttcccagta acctaccagt
     2401 tctcgcgatc atgtcaatct gtgcataatg agccgcggca cctatatgcc aaggccttcc
     2461 ggagggatat ggagggggcg tgtctataac aaagacatgc tttcttccat ctgcactgaa
     2521 attgtagatt ttgcatttct cccatcttgt taaaatctcc tgttcgaact tagaattcca
     2581 tgtcttttct tcgatctttt gtggcatctt tactttatga ctagcataaa attagtgata
     2641 ttaaagttga tgtcctgcaa acgagtataa attacaccag gcagatattt gtcaaattat
     2701 gttattagta tcaaggattg ggtatgtaaa atcagagatg aatgtcctgt aaaatcttac
     2761 tcatttgtca cttgttgaag cggaaatgaa tataggttat ttcattgctg tattcttgaa
     2821 ctactggatc actaatactc caaaatttga attggacagc gatgttccca taaagaatac
     2881 tagcgactgg ctaaaaatgc atcgaagaat caaactgaat ttgtaggtag acataattat
     2941 gctacctaat atttgcgaga atatgtgcac ctttatttac gccttcataa atatagaccc
     3001 ccagtgcttc tacgtttggg ggcatctttg atgctaatat atctattatt attgaggata
     3061 gattttccac tgtggcttct cctggaagaa ggaaagtagt actctttggt a
//
LOCUS       DASSIK010000253         2308 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_148804, whole genome shotgun sequence.
ACCESSION   DASSIK010000253 DASSIK010000000
VERSION     DASSIK010000253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2308)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2308)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2308
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_148804"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            185..388
                     /locus_tag="VFI64_04780"
     CDS             185..388
                     /locus_tag="VFI64_04780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242638.1"
                     /translation="MTEILSIDGSKIDQVLNDIAKLILLLSSRSKKSKNDERLIKQIT
                     EISNRIGDIVLQARLKKSLAVKS"
     gene            complement(801..1052)
                     /locus_tag="VFI64_04785"
     CDS             complement(801..1052)
                     /locus_tag="VFI64_04785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242639.1"
                     /translation="MSIFFLVSGFFQIFWVVPIVKRWGNYWYYAGIAGSLISIAVYVD
                     YPIFLVGILIEVLQATFIVLCGVILWKNRGIGDKNIKGM"
     gene            1347..>2308
                     /locus_tag="VFI64_04790"
     CDS             1347..>2308
                     /locus_tag="VFI64_04790"
                     /inference="COORDINATES: protein motif:HMM:NF024573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006302 - double-strand break repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HET7242640.1"
                     /translation="MVYIKKLEIYGFKSFGFKNTVLHFDNGLVAVTGPNGSGKSNILD
                     AIMFVLGENSPKALRVDKFQSLFYDAQSSSHRLIRVSIAFDNSDRGIPVDTDTVTMSR
                     ELEGQSGDSQYYLNGKKVSKMTILELLEIVVAAPNKLNIVQQGMITRISELNVEERRR
                     IIEDIIGLSYFDEKRTEALNQLSESDRRLEVAMARMGEIRKRINELEGERNDQLRYNF
                     LESQLKRFKAILYSNKIDHLRKELQIRTHMLEKNASRLNELSTKINELQKEIDTIDAE
                     KTNFMQEVDVSNKTKAQLDTKITSIVYELERTKAIVKESERRLE"
BASE COUNT          786 a          401 c          446 g          675 t
ORIGIN      
        1 aaaaatggtt tgatcctgtc ttccagcaat ttgtggatat ggaattaatt cctaggactc
       61 cgaactgaat tcacttctta gtgcccactt ggtttgcaat attgcaatct tctgattgat
      121 aggtgtcagc caattgaata acatcagaga atagttaaag ccaagaaata cggattaaat
      181 ttgaatgact gaaattctgt caattgatgg aagcaagata gatcaagttc taaacgatat
      241 cgcgaaattg attctccttc taagcagtag gtctaaaaaa tcaaaaaatg atgagcgatt
      301 gataaaacag attacagaaa taagtaatcg aattggggat atagtacttc aggcgaggtt
      361 gaaaaagagt cttgcagtaa aaagttgatg tatgatcaat gggttagcgc tttaatagga
      421 gtgatattga gatttatgtt cacatagcat tctataactt tgaaattttt cagaacattt
      481 ttcacacttc catttatttt tggaagcttc cgtttgtgtc cgatatgtat cattcttatt
      541 ttcgtacaag cctgttttgt agttgtagaa agccatattg aaattgagct tatacttttt
      601 tgaattgtac atggtgaatg acaaaaccag gacacatatt taaaatattc cctttattgg
      661 gtctaagaac cttgtatgtt gtacttggat tagcctgttg tttaaaatat gccaattgtt
      721 cccgacgttc ccgacttacc caactagaat ttgaatgaca tttgccttta aggaaggcat
      781 taccaaatga gaggtagatg ctacattcct ttgatattct tgtcccctat acccctattt
      841 ttccaaagaa taacgccaca tagtacgatg aatgttgctt gaagtacttc aatcaagata
      901 cccaccagaa agatcgggta atctacatag acggcaatcg aaattagaga tcccgctata
      961 cctgcataat accagtaatt tccccatctt tttactattg gaacaaccca aaatatctga
     1021 aaaaatcccg atacaagaaa aaatatggac atccagttaa ttctggtgtc gaggctaaac
     1081 aaggctaaga gcagtattcc tgccaataat gtgacacaga ccgctacaca atagtatatc
     1141 tttgacagag tcgttaattc caccgactga gatattagcg atgatcccag aagcatcaat
     1201 ttttcacgct gtgataagct gtaatggata caatagtctg atcactcaac ttcaaacagc
     1261 tggcacgttt ctcccataga ccagtttatc aacatttagt tatctctcaa catatattta
     1321 caggctaata atttcataaa gtctcattgg tctacattaa aaaacttgaa atatacggtt
     1381 tcaagtcatt tggcttcaag aatactgtat tacattttga taatggacta gttgctgtta
     1441 ctggtcccaa tggatcaggg aaaagtaaca ttctagatgc aataatgttt gtgttgggag
     1501 aaaatagtcc caaagcctta cgtgtcgaca aatttcagtc actcttttat gatgctcaaa
     1561 gttcttctca tcggctaatc cgtgttagca tcgcatttga caattcagat aggggcatac
     1621 cggtagacac cgatactgtc accatgagca gggaattgga aggacagtct ggtgacagtc
     1681 agtattatct gaatggaaag aaagtttcga aaatgactat cttagagctt ttggaaattg
     1741 tggtagcggc cccaaataag ctaaatatcg tacagcaagg aatgatcaca aggatatctg
     1801 aactaaatgt agaagaacgg agaaggatta tagaagacat tattgggttg tcttattttg
     1861 acgaaaaaag gactgaggcc ttgaaccaac tttctgaatc tgatcgcagg ctagaagtag
     1921 caatggcaag aatgggggag attagaaaaa ggataaacga acttgagggt gagagaaatg
     1981 atcaattaag gtataatttc ttggaatccc aattgaaaag atttaaagct attctctatt
     2041 ccaacaagat tgatcaccta cgaaaagagc tccaaatccg cacccatatg ttagaaaaga
     2101 atgcttcaag gctaaacgaa ctatctacaa aaattaatga acttcagaag gagatcgata
     2161 ctatagatgc agaaaagact aattttatgc aggaggttga tgtatccaat aaaaccaaag
     2221 ctcagcttga cacgaagata acaagtatcg tatacgagct ggagcgtact aaggcaattg
     2281 tgaaagaatc cgaaagacga ttagaaat
//
LOCUS       DASSIK010000254         4751 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_444435, whole genome shotgun sequence.
ACCESSION   DASSIK010000254 DASSIK010000000
VERSION     DASSIK010000254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4751)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4751)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4751
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_444435"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..352
                     /locus_tag="VFI64_04795"
     CDS             <1..352
                     /locus_tag="VFI64_04795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242641.1"
                     /translation="ASRYALGNMYSMFRQKASIYLEDEERSLGKPNPYSLRKALEVFS
                     SNGGYYVGDSVEDFIMSTKLNMREGYNIQFIGVYGASVCPNITKDYFSKNESLAVKNV
                     NEIPNIIYKVRNYL"
     gene            353..958
                     /gene="hisB"
                     /locus_tag="VFI64_04800"
     CDS             353..958
                     /gene="hisB"
                     /locus_tag="VFI64_04800"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazoleglycerol-phosphate dehydratase HisB"
                     /protein_id="HET7242642.1"
                     /translation="MQVNISSKKIRTASVKRETGETQIDVSVNIDGSGKVQVKSGFEF
                     IDHLVTSIGKYSMIDIKIQSKSLDSISHHLIEDVGITLGQSLDKALGERSGIRRFGYF
                     AVPMDESLSCASVDLVRRQYSKLNLRLKRKEIEGISEEDIEHFFRSLLENLCACIHIR
                     VEYGSNDHHKIESAIKAFAVALREAATIDERTGIPSTKGVM"
     gene            958..1575
                     /gene="hisH"
                     /locus_tag="VFI64_04805"
     CDS             958..1575
                     /gene="hisH"
                     /locus_tag="VFI64_04805"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HET7242643.1"
                     /translation="MPKIAIFDYGAGNLFNLQQSLLRNGAHADIVDTLRKIEDYDGIV
                     LPGVGNFDNAIESIKSSVSSFMDAMDNGVPILGICLGLEMLFCRSEEGTLEGLKILDG
                     DVVMLPKVSVKVPHMGWNNLETIRKDSKLLDGIKEGSWVYFVHSYRINPTDKSIVVAT
                     SQYGGTLSAAMEQENVFGTQFHPEKSGAVGSRIIRNYIEMCSGKK"
     gene            1572..2282
                     /gene="hisA"
                     /locus_tag="VFI64_04810"
     CDS             1572..2282
                     /gene="hisA"
                     /locus_tag="VFI64_04810"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003949 -
                     1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HET7242644.1"
                     /translation="MKVLAAIDIMDGKVVRLTKGQESNKIIYSDDPLYVAKRWTAEGA
                     DMLHLVDLDAALGTGRVNTVLIEEIVRSLKIPVQVAGGLRSEEVIAKMFEIGCSRVVL
                     GTLAYKKPNIVRKLIKLHPQKIVISIDQIDSLVMIKGWKSSSGFTVMEAIAKFSKLGA
                     SHFLLTSIDKDGTLEGPDIGILNKVCVNTQIKVIASGGISTLKDIVKVAAVGCKEAIL
                     GKTLYEGRVELKKVRAIT"
     gene            2207..3091
                     /gene="hisF"
                     /locus_tag="VFI64_04815"
     CDS             2207..3091
                     /gene="hisF"
                     /locus_tag="VFI64_04815"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HET7242645.1"
                     /translation="MQGGHIGQDTVRRKSGAQKGTGNHIMPLAKRIIPCLDVDKGRVV
                     KGIKFSGVKDAGDPVEFAEKYRNQGADELVFLDITASQQGRDIMKHVVRKVASVIDIP
                     FTVGGGIKTLDDARGILLNGADKVSINTAAVKHPKLITDLMTIFGTQCVVVAIDVKRN
                     YGGGGKNIFRTKESASQFYFEVRIYGGKEGTGIDAIEWAKAVAKLGAGEILLTSIDAD
                     GTENGYDIELTRAICENVRIPVIASGGCGSSTHMLEVFRETDVDAVLAASIFHYDKLT
                     VDSVKKYLSDRQIKMRFD"
     gene            complement(3225..4607)
                     /locus_tag="VFI64_04820"
     CDS             complement(3225..4607)
                     /locus_tag="VFI64_04820"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HET7242646.1"
                     /translation="MISFVVALITSPVWFDLNDIIYNSDGLAKYLSRNFIPAQGSQFW
                     LLVPIGIIGAWRWTVWLIKKATATVYEAVEPRKIPEEVRGLSFAIITPVYNEDPHIFR
                     NALNSWWENKPDELVAVIDKSDTECINVFNDFRKHIPSAKLIVTSKPGKRAALVDGIL
                     ASCSDIVALVDSDTIWGSNIRDNVLAPFQADPSIGGVTTRQHPISRGSLWQKMTDVFW
                     DMRNYYDLPAQTAAGRALSCLSGRTSLYRRKIILHKLDFFLNEIIFGRKKESGEDKCL
                     TRLVQEQGWKTYYQSNAVVYSSAASDFKTFWSQRLRWSRNSHNSDFVSLRDGWAWRHP
                     YLAFFMLDRFISTFTLFLGPIFFGIAIANHQWVFATFIVLLWIIGRGIKIIPHIRRHP
                     QDIVFLPIYVAINFLVALTKLYALVTIRDQRVIRGSKRYRKNLFSKIKDFLLTGEIIF
                     GIIIIVSIFH"
BASE COUNT         1492 a          826 c         1096 g         1337 t
ORIGIN      
        1 tgcctctcga tatgccttgg ggaatatgta ttcaatgttc aggcaaaagg cctcaattta
       61 tctagaagac gaggaaagaa gtttaggaaa gccaaatcca tattcgttaa gaaaggccct
      121 cgaggtgttt tcatctaacg gaggttacta tgttggcgat tcggtagaag actttatcat
      181 gtctacaaag ctgaatatga gagaaggata taatatccaa tttattggtg tgtatggtgc
      241 gagcgtctgt ccgaacatta ctaaagacta tttttcaaag aatgagtctc ttgcggttaa
      301 gaacgtaaac gagataccga acataatata taaagttaga aactatttgt aggtgcaagt
      361 gaatataagc agcaaaaaaa tacgaactgc aagtgtcaaa agagaaaccg gtgaaacaca
      421 aattgacgtg tctgtaaaca ttgatggtag cggaaaagtt caagttaaaa gcggtttcga
      481 attcatagat catcttgtta cctcaattgg caaatacagc atgattgata ttaaaattca
      541 atccaaatcg cttgattcta tttcgcatca tctcatagaa gatgttggta tcactctagg
      601 tcaatcattg gataaagctc tcggcgagag gtctggaata agaaggttcg gatattttgc
      661 cgtgccgatg gatgaatcct tgagttgcgc atcagttgat ttagtcagga ggcaatactc
      721 taaattgaat ctcagattaa agagaaaaga aattgaagga atcagtgaag aagatattga
      781 acattttttt agatcgttat tagaaaattt gtgtgcttgt atccacataa gagttgaata
      841 cgggagtaat gatcatcata aaatagaatc agcgattaaa gcttttgccg tcgcacttag
      901 ggaagctgca acgattgatg aaagaacagg gattcccagt acgaaaggtg tgatgtgatg
      961 cccaagatag caattttcga ttacggggca ggtaatttat ttaacctgca gcaatcgctc
     1021 cttcgcaacg gggctcatgc tgatatcgta gatacactta ggaaaataga ggattatgat
     1081 gggatcgtat tgcctggagt cggcaatttc gacaatgcga ttgagtccat aaagagtagt
     1141 gttagttcgt ttatggatgc tatggataat ggggttccaa tactagggat ctgtcttgga
     1201 ttggaaatgc tattttgtcg cagcgaggaa gggaccttgg aagggctgaa gatactagat
     1261 ggagacgtgg tgatgttacc aaaggtcagt gttaaagtac cgcatatggg atggaataac
     1321 ttggaaacga ttcggaaaga tagtaaactg ttggatggta ttaaagaagg gtcatgggtc
     1381 tactttgtcc attcatatcg cataaatcca accgacaaat caatcgttgt tgccacttca
     1441 caatatggag gaactttgtc agctgctatg gagcaagaaa atgttttcgg aactcagttt
     1501 catccagaga aatccggagc cgtgggatca aggatcatta gaaactatat tgaaatgtgt
     1561 tcaggcaaga aatgaaagtt ctcgcagcga tagacataat ggatggaaaa gttgtgcgac
     1621 ttaccaaggg tcaggagtct aacaaaatta tatacagcga tgaccctttg tatgtcgcaa
     1681 aaaggtggac agctgaagga gccgacatgc ttcacttggt tgaccttgac gcagctctcg
     1741 gtaccggaag agtgaatact gttctaatag aagagattgt aagatcgtta aaaattcctg
     1801 ttcaggtcgc cggtggatta agatcagaag aagtaatagc taagatgttt gagattggtt
     1861 gcagtagggt ggtattggga actttggcct acaagaaacc aaacatagta cggaaattga
     1921 ttaaacttca cccacagaaa atcgttattt caattgacca aattgatagc ttagtcatga
     1981 taaagggatg gaaatcctcc tcaggattta ctgtgatgga agcgatagcg aaattcagta
     2041 aattaggggc atcacatttt ttgctaacta gtatagacaa ggatgggacc ttagaaggac
     2101 cggatatagg aattctgaac aaggtatgcg taaatacaca aataaaggtg atagccagtg
     2161 gtggaatttc gacccttaag gatatagtaa aggtagctgc tgttgggtgc aaggaggcca
     2221 tattgggcaa gacactgtac gaaggaagag tggagctcaa aaaggtacgg gcaatcacat
     2281 aatgccacta gcaaaaagaa ttatcccctg tcttgacgtg gacaaaggta gggtagtaaa
     2341 gggaattaaa ttttctggag taaaagatgc aggggatcct gttgaatttg ctgaaaaata
     2401 cagaaatcaa ggggccgatg aacttgtctt cctcgacata acggcatctc aacagggtag
     2461 agatattatg aagcatgttg tgaggaaggt ggcaagtgta atagatattc cattcactgt
     2521 tggtggaggc atcaagacac tggacgatgc aagaggcatt ttacttaatg gtgctgataa
     2581 ggtttcgatc aataccgcgg ctgtgaagca tccaaaatta attactgacc taatgacaat
     2641 attcggaaca caatgcgtag tggtcgccat tgacgtgaag aggaactatg gtggaggtgg
     2701 gaagaatatt tttaggacca aggaaagcgc tagtcaattt tattttgagg tcagaatata
     2761 cggtggcaaa gaagggacag gaattgatgc cattgaatgg gcaaaagctg tcgcgaaatt
     2821 aggcgctggt gaaatcctgt tgacaagtat agacgcagac ggtactgaaa atggttacga
     2881 tattgagctt acaagggcaa tatgtgaaaa cgtcaggatt ccagtaattg catcaggcgg
     2941 atgcggttca tcgacgcata tgctggaagt ttttagggag acagatgtgg atgctgttct
     3001 ggcagcttct atttttcact atgataaact aaccgttgat agtgtgaaga aatatttatc
     3061 agatagacaa atcaagatga gatttgatta gctgtaagtt tgctggtgtc agttattgta
     3121 atccatggtt ttttcctcta tcgaatctcg cgacgtagta aaaatgtaaa taaaaaaaag
     3181 ctccattgga attcaatggc acaatgacac aaggcccatg atggtcagtg aaatattgag
     3241 acgataatta ttattccgaa tattatttca cctgtcagga gaaagtcctt tatcttggag
     3301 aataaattct ttctatatcg cttggatcct cttatgactc gttggtcacg gattgtaact
     3361 agggcatata atttcgttaa ggcaacaaga aaattaatag cgacgtaaat cggtaagaag
     3421 acgatgtctt gtggatgtcg ccttatatga ggaatgattt tgatacctcg ccctataatc
     3481 catagcagaa cgataaaagt cgcaaacacc cattgatgat ttgctatagc aatcccaaaa
     3541 aaaattggcc ctaaaaacaa cgtgaacgtg gagatgaatc tatctaacat aaagaaggca
     3601 aggtacggat gtctccaagc ccatccatcc cttaggctca caaaatcgga gttgtggcta
     3661 ttcctagacc agcggagccg ctgactccag aaagtcttga aatccgaagc tgcagaagag
     3721 tagaccacag cattactctg ataatatgtc ttccaaccct gttcttgtac aagcctcgtt
     3781 aggcacttgt cctctccaga ctcttttttc cttccgaata ttatttcatt caggaaaaag
     3841 tccagtttgt gaagtattat tttcctacga taaagcgatg tcctcccaga aaggcaagat
     3901 aatgctcgac cagccgctgt ctgtgctggc aagtcgtagt aatttctcat atcccagaac
     3961 acatctgtca ttttttgcca caatgaacct cttgatatgg gatgctgcct agttgtcacg
     4021 cctccaatac taggatctgc ttgaaatggc gccagcacat tatctcttat attagagccc
     4081 caaattgtat cgctatcgac caaggccact atatcagagc aggatgccag aatcccatcg
     4141 acaagagcgg ctcttttccc gggtttagat gttacaatca gtttggcact tggtatgtgt
     4201 ttacgaaaat cattaaaaac atttatgcat tctgtatcag acttgtctat gacagctacg
     4261 agttcatcag gcttgttttc ccaccatgaa ttaagagcat ttctaaaaat gtgtggatct
     4321 tcattgtaaa ctggcgtgat tattgcaaaa gagagccctc tgacttcttc tgggattttt
     4381 ctaggttcca cggcttcgta tactgttgct gtagcttttt ttattaacca cactgtccat
     4441 ctccatgctc cgattattcc tataggaacc aggagccaaa attgtgagcc ttgcgcggga
     4501 atgaaattgc ggcttagata tttcgccaga ccatcactgt tatagataat atcgttgaga
     4561 tcaaaccaaa ctggcgaagt aattaatgcg actacaaaag agatcaatac aatatcgaat
     4621 actattgatc tggaacgaat agtttggtgc ttaagtatgc ctgtagtatt tattaaattt
     4681 gttcgccttt ttattatagt gatcccggta tttttattta atagtaactg ttcctatgct
     4741 ctataaatca g
//
LOCUS       DASSIK010000255         5636 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_947467, whole genome shotgun sequence.
ACCESSION   DASSIK010000255 DASSIK010000000
VERSION     DASSIK010000255.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5636)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5636)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5636
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_947467"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..326
                     /locus_tag="VFI64_04825"
     CDS             <1..326
                     /locus_tag="VFI64_04825"
                     /inference="COORDINATES: protein motif:HMM:NF014091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF126 domain-containing protein"
                     /protein_id="HET7242647.1"
                     /translation="SVDTHTGVVSDPSHDLIGISLKNSILIFPYAIGSSVGAYSIFAL
                     KSNGVAPSGIMCTIKVDITTASGCAIADIPLAQTIKGDQLQGLSDNSEAILDANNGSL
                     KINKV"
     gene            624..1538
                     /locus_tag="VFI64_04830"
     CDS             624..1538
                     /locus_tag="VFI64_04830"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: protein motif:HMM:NF014641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006780 - uroporphyrinogen III biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HET7242648.1"
                     /translation="MSLANLTVAITSSRRAIELAHLIKTFGGIPYIVPTIGIVDAQPI
                     SNEVDFFINTVLRDKIDYFVFMTGPSVHYFFRIASNLGVKEELISVIRGSTVVSRSDK
                     PSHVLRSFGIYTDLFPDENTERGILKLLKGRDMKDKKIAIIWHGASSRRFKMELESEG
                     SNVLELSSYSYSLSLDESADAILKQMGYKYIKPKIETILKLIDDAAGGLIDVITFTSP
                     PSVFELMKIADIYNYRESLLSSLNQRVIVTSVGPSTTESLNRNGITVDVMPSVYKMGP
                     MVKALSDYVSLQGQQNPKLGKLMKDGKL"
     gene            1650..1865
                     /locus_tag="VFI64_04835"
     CDS             1650..1865
                     /locus_tag="VFI64_04835"
                     /inference="COORDINATES: protein motif:HMM:NF019876.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TFIIB-type zinc ribbon-containing protein"
                     /protein_id="HET7242649.1"
                     /translation="MTSFCPECGGELKFDISTKNFICRSCGLYASREKIDELRDKTHQ
                     NTNSDDRRKHDDYLDWWQSSKKDKQKQ"
     gene            complement(1893..2399)
                     /locus_tag="VFI64_04840"
     CDS             complement(1893..2399)
                     /locus_tag="VFI64_04840"
                     /inference="COORDINATES: protein motif:HMM:NF013224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HET7242650.1"
                     /translation="MHFNRDLLDDINLKIIYMLSKDSSMPFVEVAKQIGISDATVHIR
                     VRRLIADGLIKKFTISVDNNMLGYDHLAFMGINIEPGFADEVTEGLLKIDEVLEIHEM
                     HGRFDLILKIRAKDLDQMREIVVNKIRKLPRILETELMTVLKTRKEDQLVSLKKEVHD
                     IPGTQFEV"
     gene            2526..3485
                     /locus_tag="VFI64_04845"
     CDS             2526..3485
                     /locus_tag="VFI64_04845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00269 family protein"
                     /protein_id="HET7242651.1"
                     /translation="MKSLTLQVCNKCNKNDAIYKRYYSGETLCKSCFLRSIEHKVKKT
                     IAKFSMVKYGEKVAIAVSGGKDSLTLLYILSHIFKSNELGKLIAVTVDEGIDGYRDES
                     LRIVKEFCSELEVENRTMSYKELFGTGMDEAMKLRKSEKTSSCSMCGTFRRRALDVLS
                     ESCGADVIATGHNLDDHIQTFFINMFSGDVERIGWTYPEPVEYGSSGIKKIKPFLGLY
                     EQEIIFYALQRNIPFQSEECPYMNESIRSDIRLFLNRLEISHPGVKYSMYNSVLKISE
                     GLKNRNTTKKSVQCIVCQRNSTSTFCSVCKTVAMLSNNLDSDK"
     gene            3568..3878
                     /gene="ffs"
                     /locus_tag="VFI64_04850"
     ncRNA           3568..3878
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="VFI64_04850"
                     /product="signal recognition particle sRNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01857"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="archaeal-type; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /db_xref="RFAM:RF01857"
     gene            complement(3982..4986)
                     /gene="dph2"
                     /locus_tag="VFI64_04855"
                     /pseudo
     CDS             complement(3982..4986)
                     /gene="dph2"
                     /locus_tag="VFI64_04855"
                     /inference="COORDINATES: protein motif:HMM:NF013983.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0043364 - glycyl-radical enzyme activating
                     activity [Evidence IEA];
                     GO_process: GO:0017183 - protein histidyl modification to
                     diphthamide [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="diphthamide biosynthesis enzyme Dph2"
BASE COUNT         1784 a          990 c         1106 g         1756 t
ORIGIN      
        1 cgtcagttga tacgcatact ggtgtggtat ctgatccttc acatgattta atcggaatct
       61 ctctgaagaa tagtattttg atttttccgt atgcaattgg gagtagtgta ggtgcctatt
      121 ccatatttgc tctgaaatca aatggtgttg caccgtcggg aattatgtgt actattaagg
      181 tggatatcac tactgcatca ggatgtgcta tagcagacat accgttagcc caaaccatta
      241 aaggggatca actacaggga ctatcagata actctgaagc gatattagac gcaaacaatg
      301 gttccttgaa gatcaataaa gtttaagtga ttactgcatt aaccgaaaat tggtgtgtgg
      361 catttgacgg gcgaacggac tacccgatct agttggtgga atgaagagaa aagtccacac
      421 accgactgct gtggaatcat tatcgaagcc aagtaaatga tattaataca gaaaactagt
      481 ggttaatcta atagtatgtt tgttcatagt attataatgc ctaagcaggg tttatgtctc
      541 attatttcgt atcttgatca aaaaccccct aatttctata atttccattt tcaaattatt
      601 tgccttccgg agaattcagt aacgtgtcat tggctaacct aactgtagca attaccagta
      661 gccgaagagc aattgaactt gcacacctga ttaagacatt cggtggaatt ccttatatcg
      721 ttcccacaat aggtattgtg gatgctcaac caatttcaaa tgaagttgat ttttttatta
      781 atactgtact tagagataag attgactatt tcgtcttcat gactggtcca agtgtgcatt
      841 atttttttag aattgcttca aatttgggag tgaaagaaga acttatctca gtcattcgtg
      901 gctctactgt cgtctcaagg agcgataagc catctcacgt actccgtagt tttggaatct
      961 ataccgatct ttttccagac gaaaatactg aaaggggaat actgaaattg cttaaaggaa
     1021 gagatatgaa agacaaaaaa attgctatca tatggcatgg agccagtagc agacgtttca
     1081 aaatggaatt agaatctgag ggatctaatg ttttggaact atcgtcgtat tcctactcgt
     1141 tatcgcttga tgaatcggca gatgccatct tgaaacagat gggatacaaa tacatcaagc
     1201 cgaaaatcga aactatttta aagctcattg acgacgcagc cggcggtctt attgatgtaa
     1261 tcacttttac aagtccgccg tcggtatttg aactgatgaa gattgcagat atctataatt
     1321 acagagaatc gttgttgtct tctttgaatc aaagagtaat agtcacctca gtaggcccat
     1381 ctactaccga atcattaaat cggaatggga taactgttga tgtaatgcct agcgtgtaca
     1441 agatgggtcc aatggtaaag gctctttctg attatgtctc attgcaagga cagcaaaatc
     1501 caaagttagg aaagctgatg aaggatggga agctgtgatg tattatgaga atattctcgt
     1561 aagtagacac ataaaaatta cggttgttga agctcctaga ctacaatata cgtattactt
     1621 tttattagga aatttgcagt aatacaatat tgactagctt ctgtcctgaa tgcggtggag
     1681 aactaaaatt tgatatttcg acgaagaatt ttatttgtag gagttgtggt ctttatgcgt
     1741 caagggaaaa aattgatgaa ctgagggaca agacacatca aaataccaat tctgatgata
     1801 gaagaaagca cgatgactac cttgattggt ggcaatcatc caagaaggac aagcaaaagc
     1861 aatagatatt cgctagcata acttattcta tgctacactt caaactgggt gccaggtatg
     1921 tcgtgtactt cttttttaag cgacactagt tgatcttctt ttcttgtctt aagaacagtc
     1981 attaattcag tttctaagat cctgggcaat ttgcggattt tatttactac tatttctcgc
     2041 atttgatcta aatccttcgc tcgaatcttc aatataagat caaatcttcc atgcatttca
     2101 tgtatctcta atacttcatc gatctttagt aaaccttctg taacttcgtc tgcgaaacca
     2161 ggttcaatgt ttatgcccat aaatgcaaga tggtcatagc cgagcatatt gttatctaca
     2221 gatatggtaa attttttgat caaaccatct gcgatgagtc tccttactcg gatatgcacc
     2281 gtcgcgtcgg aaatgccgat ctgtttggct acttcaacaa agggcataga agaatcctta
     2341 cttagcatat aaataatctt aagattaata tcgtctaaaa gatcacggtt aaaatgcaaa
     2401 tcgagtaaaa gtaatgagat ctatgtggtt taaatgcttt tggaaagaga ttataaacga
     2461 attctagttt tttcaaaata atgtgtataa attaggtatt aatgtagcta ataatcacga
     2521 ttaatatgaa atcattgact ttacaagtat gtaataaatg caataagaat gatgccattt
     2581 acaagcgata ttattctgga gagactttat gcaaatcctg tttcctgcga tctatcgaac
     2641 acaaagttaa aaagacaata gctaagttct cgatggtcaa atacggagag aaagttgcta
     2701 ttgcagtatc ggggggcaaa gacagtctta ctcttcttta catcttaagc cacatattca
     2761 aatcaaatga attgggtaaa ttgatagccg taacagtgga cgaaggtatt gatgggtatc
     2821 gtgatgaatc tcttagaatt gtcaaggagt tttgctcaga attggaggtg gagaacagaa
     2881 caatgagcta taaagaacta tttggaacgg ggatggacga agcaatgaag ctaagaaaat
     2941 cagaaaaaac ctcctcttgt tcgatgtgcg gtacattcag acgacgtgct ctggacgtac
     3001 tatctgaatc gtgtggcgcc gacgttattg ccaccgggca caatctagat gatcatatcc
     3061 agactttttt catcaatatg ttctctggag atgttgaaag aataggatgg acatatcctg
     3121 agcccgtaga atatgggtca tcgggtataa aaaaaatcaa accattttta ggcctttatg
     3181 aacaagagat catattttat gccctacaaa gaaatattcc ttttcaatcg gaggaatgtc
     3241 cgtatatgaa cgaaagcata agaagtgaca taagactttt cctcaataga cttgaaatat
     3301 cgcatccggg agtaaagtac agtatgtaca attctgtcct caaaatttca gagggattaa
     3361 agaatcgaaa tactaccaaa aaatctgtgc agtgcatagt ctgtcaaaga aattcgacca
     3421 gtaccttctg ctctgtatgt aagactgtgg caatgctttc gaataattta gactctgaca
     3481 aataactccg tattcttgtt tatggcatgg tgttctgtta taatggtgat atgcaaatat
     3541 agcaagtaag tacataatat tacgcggtag cagggagggt cggggtgtta gccgtacccc
     3601 atatcagaaa tcggctttat gctgggatca gtaactgctg ggtaaatctt tggatggaaa
     3661 gttcctactt accttgcgga tatgatatca cgccgtgtcg gatggatgtg aacagcatgc
     3721 tacacgaagg tgaagccatg actgtgaatc gtcgaaatgg gtgaggtccg ggagggagca
     3781 accctaaggc ggcgtatcca tgctagcacg tctacgtgtt tgatcttgta gggttagaga
     3841 ttgggcattg catttagagt ggtaccggta gtctgctacc gcataagatt tgaactaatt
     3901 atacgtttga tataaaaaga tcttgaaatg acaaatacca gagaccgact aattaaccag
     3961 ctcacaaatg aaaacgaaat atcagagcca atgacttatt tgcataaaat tttctacggg
     4021 ctccttcttt aatagcttta ttagagatag tgcttgggga acagataaca taggtttatg
     4081 aaaatggttg tctgtactaa ttctaggaca tgctacttgt acaaagacat cgataccatt
     4141 gaaaattcta attctttcat cagttattta gttcatgaca atgagctgga cagactttcc
     4201 taaattttca aaagtttttt taagatttag agctttgcga ctggcgaatt gtccctcttt
     4261 tattccgata atgatgccaa tagaattcgc gtctaacgat ttgtagacag ataatattgc
     4321 ttttttctga agtttactag caatatcgct aacgtcagaa aactcttcaa agtagggatc
     4381 aagcatgaac gttggtttct gtgtcgctat tgcaattcct gctgaatgga atacactctg
     4441 accaagaaaa atgtacgcat caacactatc ttgcacgtcg taagccggat agaattcaca
     4501 tccaaatact tgggcttcat ttagctgccc tcttcctctt ccaattacta cattgtagcc
     4561 ctgttcttca aaaatttctt taactcgatc aatggcacag agatgttgac tacttgtaac
     4621 tagagaaatg ttgtgaatgt tctgtcgttt cagctctaaa gcacatttgg ttgcaatatt
     4681 ttcaaaactt atatcatcgt aggcatcaat cattacgact ttatcgccaa atgttttcat
     4741 agaaattgtg tggccaatat tgaacaaaat gtcggcacca actacttcag ctgcgtgtgt
     4801 atttaggtca cacgaacccc aagaattatc accaattatg taagcaggta tgtgatataa
     4861 ttctgcgatt ttctcagcag atttctgaat cttgtgcatg agagcatcag gaccagatag
     4921 agcgacagaa cgaggatttt ttgttgctat tacagaaaaa attgtttctt cgtcgattga
     4981 tatcaattta ataaattcac cccgattgtt atcatctgat tcagcattcc ctcttgcatt
     5041 attataccat aaaattggaa tgaatgaatc aatttaaatc atgctaatcg ttcataggca
     5101 cccccaaaaa gcgaattctg tccatgaatt gcattctatg gggattgtga ttgtactgtt
     5161 cattcttcat aacaattgct tatgaatatt gaactcctat gcaaactttg attcgtatac
     5221 aacatcaaat ataataatat gcatcaacat agattatgtg acatgtgaca agatgaaaag
     5281 ccacaaacgg ctaaattttt tgtttatcta gcaacatata tagtatggat ctctttaaac
     5341 attttgtttc catagtagaa ttgttaactt ttactaatta aggctaaatt tagttaatat
     5401 ttgttattta tattcctgaa tgaatgtcac gagatgggta ataatccaga atcagccatt
     5461 gcccagtaat catctgtaat taataatgaa tggtatgtta gtaatctcat caacaatacg
     5521 acaactcaca ggtcatgatt acgaaaatgt gtaaagaccc tccattgatc gtcgatacta
     5581 tcttcgagtc taactttcgt gaatcgatca tgatctaatg tatagatgag cggata
//
LOCUS       DASSIK010000256         2239 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_852875, whole genome shotgun sequence.
ACCESSION   DASSIK010000256 DASSIK010000000
VERSION     DASSIK010000256.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2239)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2239)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2239
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_852875"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            328..702
                     /locus_tag="VFI64_04860"
     CDS             328..702
                     /locus_tag="VFI64_04860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242652.1"
                     /translation="MDYDKLCTAIRELDPKVRFVGVCNETGDIKYGGLREGLTTLLSA
                     DETKRSNLLAIERWKLHNALAPKIGKVRYSMEEYEMIKQFTIGMEDNHLMLISTEVDA
                     DHSRIIESAIRLIISYYVKDYL"
     gene            866..1753
                     /locus_tag="VFI64_04865"
     CDS             866..1753
                     /locus_tag="VFI64_04865"
                     /inference="COORDINATES: protein motif:HMM:NF013793.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HET7242653.1"
                     /translation="MTRCIAFHSYKGGTGKSTIGSNMAALMAKRGLKVVLLDLDVYAP
                     SLQGYFHWAPKKWINDFLFENAEADEILEDLTHILKKFPASGSSDAEIKGTFLVGFSN
                     TSKDEIYRLDGAVRQESSKVQLLRKFINLREEIADDHEADYLIIDTSPGIRYWSINAL
                     AVADTILLSLKMDGIDIEGTRIMAREIYDNFTKLGTVSHLLLNRVAGYCLPPSLNKDQ
                     ISETGFDSQSYSVVLDEQSTAIKKLSTDLNLQVICSIPCYCDIQFNSEEYLTVLNHPN
                     HPFTAKINELIDSFESTKG"
     gene            1783..>2239
                     /locus_tag="VFI64_04870"
     CDS             1783..>2239
                     /locus_tag="VFI64_04870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242654.1"
                     /translation="MPSGNSQIPGLSHLTAKGSLSDLRDTILLLKGAPGSGKSVYCRL
                     FIADGLHEGVKCVYLNSSLTDKQFRNLFSDSHVAANNLKFVNPYLRKSLSVGSSGSGQ
                     MDSQMDPKLAQSLQEIRDPLSEWGSDTDTTKENNQEDLSRVYFVIDSLTH"
BASE COUNT          705 a          397 c          474 g          663 t
ORIGIN      
        1 ctatacattc acgtccacct tccttacaca tatggcaaaa gagttttgtc attgatatat
       61 tttgtgaaat ttagatatta agttgatcct ctacagggta ttttaatctc attcattaat
      121 cctcgccctt cggagtcata cactagtttg gtaccagttt attagacctt cagcatttcg
      181 tctaggtttg ttcgtaaata tcaaatctcc tgatcaaaaa aaactaggcc gacattttag
      241 gtaggagtag gctgaacata ttattaatct caatttaagt ggattaatat ttttatattc
      301 aatctatttt gaacatcttt gttaggcatg gattatgata aattgtgtac ggcgatacga
      361 gaacttgatc caaaggtacg ttttgtaggt gtatgcaacg aaactggtga catcaaatat
      421 ggtggattac gagagggctt gaccaccctt ctttctgcgg atgaaaccaa gagatccaat
      481 cttctcgcga tagaaagatg gaaattacat aatgctttgg ctccgaagat cggcaaggtt
      541 cgctattcga tggaagaata tgaaatgata aagcaattca caatcggcat ggaggataac
      601 catcttatgc taataagtac ggaagttgat gctgaccata gtagaattat agaaagcgct
      661 ataaggctaa taatatctta ttacgtaaaa gattacttat gaaagtactg caatctgaat
      721 tatgggtagt ccaacgatag atataatcgg tttgattttt cttcagttgg gggagttcga
      781 gaaatagatt ctttgtttaa gaatgcgctt ggaacttgtc atgacagtca gatttatcta
      841 ttataaaaag tcttaacggg acaagatgac tcgctgcata gcttttcact catacaaggg
      901 ggggacaggt aagtcaacga taggatccaa catggccgca ttaatggcaa aaaggggact
      961 caaggtggta ctgcttgact tggatgttta tgcaccaagt ctacaggggt actttcactg
     1021 ggctccgaaa aaatggataa atgattttct ttttgaaaat gcagaagcag atgagatctt
     1081 ggaagatttg acccatatcc tcaagaaatt tcctgcttct ggatcatcag atgctgagat
     1141 taaagggaca tttcttgtag ggttctcaaa tacctctaaa gatgagatat acaggctgga
     1201 tggggctgtc agacaggagt cctcaaaagt gcaactgcta aggaaattta tcaacctccg
     1261 agaagagatt gcagatgatc acgaagctga ttacctcata atagacacaa gtccgggaat
     1321 aaggtactgg tcaataaatg ctcttgcagt tgctgacacc atcctattgt cactgaaaat
     1381 ggatggaatt gatattgagg gtaccagaat aatggcaaga gaaatatacg ataattttac
     1441 aaagctgggt acagtatctc accttctgct gaacagagtg gcaggttatt gtcttcctcc
     1501 ttcgttgaat aaagaccaaa tctcagaaac gggttttgat tctcaaagtt actctgttgt
     1561 cttggatgaa cagtcaactg ctataaagaa attatccaca gatctaaact tgcaagtaat
     1621 atgcagcata ccttgctatt gcgatattca gtttaatagc gaagaatact tgactgtgtt
     1681 aaatcatcca aaccatccat ttactgccaa aatcaacgaa ttgatagaca gcttcgagtc
     1741 cacgaaagga taaataggaa tctgtaaaca tggggtattg taatgcccag cggtaactca
     1801 cagattcctg gactttccca tcttacagcc aaagggtctt tgagtgattt aagggataca
     1861 atacttcttc tgaaaggtgc tccaggttca gggaagagcg tttattgcag attgtttatt
     1921 gcagacggtt tgcacgaagg agtaaaatgc gtttacctaa actccagtct aacagataaa
     1981 cagtttagaa atttgttcag tgactctcat gtggcagcga ataatcttaa atttgtgaat
     2041 ccatatttaa gaaaatcgct gtcagttgga tcttctggct caggccaaat ggattctcag
     2101 atggatccta aattagcaca gagtcttcaa gagattagag atccgctatc tgagtggggg
     2161 tcggacactg ataccactaa agagaataac caagaggact tgtccagggt ttactttgta
     2221 attgattcgc tcacacatc
//
LOCUS       DASSIK010000257         2656 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1445507, whole genome shotgun sequence.
ACCESSION   DASSIK010000257 DASSIK010000000
VERSION     DASSIK010000257.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2656)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2656)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2656
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1445507"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(114..1094)
                     /locus_tag="VFI64_04875"
     CDS             complement(114..1094)
                     /locus_tag="VFI64_04875"
                     /inference="COORDINATES: protein motif:HMM:NF013595.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242655.1"
                     /translation="MDSRIVTFFVLAVVFSSSMILNGAISVYGADQYSFVRKWGSYGA
                     VAGKFSQPIEIAIDSKGYLYVTDLTAVTHDVQKFTKNGTYVTSWGFLGFGPGRFTNPA
                     GLTVDSSDHVYVTDNGNPDNGIQKFTDNGTYITGWGTVGLQPGAFINPSGIGVDSSGN
                     VYVNDFGENNRVQKFDSNGDFIMQWGTVGRNDGQFMNPTDILVDPQGLVYVVDSGNDR
                     IQKFDGNGKFISKWGDSGRGDGQFDRPGGIAIDSSGFIYVSDIGNNRVQKFTADGQFV
                     TKWGSSGSGDGQFNGPMGLTVDPSGYVYVVDIGNKRVQVFAPSNQTTANP"
     gene            complement(1184..1765)
                     /locus_tag="VFI64_04880"
     CDS             complement(1184..1765)
                     /locus_tag="VFI64_04880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242656.1"
                     /translation="MKSILKEYGLALGVTAIGFLIMGSSAVLSIGKVSAFPPSIYGEG
                     KFLFGNIGSIQNDKDGKPAWLLSGHWKSNLINMSENDNANSSAFSASFEMVMLDGKNA
                     HTHAITNFILKGKSTEGNSTLVFNGTSSASLRNGLVQNVPTTIKFMGNKVVSIWVDPS
                     MVDNHFGNTPIYGTIMKPDAGFDRANSNSNSSR"
     gene            complement(2069..2296)
                     /locus_tag="VFI64_04885"
     CDS             complement(2069..2296)
                     /locus_tag="VFI64_04885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242657.1"
                     /translation="MVGHLFQFLARSLVHFASHHFPIMALPSNAVNEELTADVIITIE
                     SKLSRVGSLNKYFMMIVIQRCDIPNYSLIAK"
     gene            2475..>2656
                     /locus_tag="VFI64_04890"
     CDS             2475..>2656
                     /locus_tag="VFI64_04890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242658.1"
                     /translation="MKHPLTPNRIVVLVAALMFMTNSCLCNPNNADGDGLTQANMVAS
                     QDNNKKATLFVGISPL"
BASE COUNT          811 a          556 c          474 g          815 t
ORIGIN      
        1 ctgcttagaa ttctgaatcc tcatctcaag cgcactgatt gaaaacgtac agatcgagta
       61 aaaaggtata gtttatttct aaattattac taatttacta caaagtttcg agtttatgga
      121 tttgcagtag tttgatttga aggagcgaaa acttggactc gcttgttacc aatgtcgact
      181 acatatacgt atccagaagg atccactgtt aaacccatgg gaccgttaaa ttgtccatcg
      241 ccactacctg agcttcccca tttcgttacg aattgaccat cggctgtaaa tttctgaact
      301 ctattgttac ctatatcact tacataaata aaaccagaag agtctatagc aatacctcca
      361 gggcgatcaa attgtccatc acctcttcct gaatcacccc atttggaaat gaatttacca
      421 ttgccatcga acttttgaat cctgtcgttg ccactatcta cgacatatac aagaccttgg
      481 ggatcgacca agatatctgt tgggttcata aattggccat catttcttcc cactgttccc
      541 cattgcatta taaagtcacc attgctgtca aacttttgca ccctattatt ctctccaaaa
      601 tcattcacat agacatttcc agatgaatct acgccgattc cagatggatt aatgaatgct
      661 ccaggctgca gtccgactgt accccatcca gtaatgtatg taccgttgtc agtgaatttt
      721 tgtattccat tatcgggatt tccgttatca gtcacgtaca catgatctga ggagtccaca
      781 gtcagtcctg ctggattcgt gaatcttcct ggcccaaatc caaggaagcc ccatgaagta
      841 acataagttc cattcttggt aaacttctgt acatcgtgtg ttacagcagt gagatcggtt
      901 acgtatagat aaccttttga atctatagct atctcgatcg gttgagagaa ctttcctgct
      961 actgccccat aggaacccca cttgcgtaca aatgaatact gatcagcacc atatacagat
     1021 attgctccgt ttaaaatcat tgatgatgaa aagacaacag ccaaaacgaa aaaagttaca
     1081 atcctagaat ccatgaatat ctactcgata aagaaaacgg tcgtatttat gtattcatat
     1141 gaatcaatgt ttgaaaaagt aacctctaaa gcctgtcctc caactatctc gaggaattag
     1201 aattcgaatt tgccctatcg aatccagcat ctggtttcat tatagttccg tatataggtg
     1261 tatttccgaa atgattatca accattgaag ggtctaccca tatactcact actttattgc
     1321 ccatgaattt gatcgttgtt ggtacatttt gtaccaaacc atttcgcaag cttgcagaag
     1381 aagtgccatt gaaaaccaga gtagaattgc cttccgttga tttgcctttc aatataaagt
     1441 tagttattgc gtgtgtatga gcgttctttc cgtctaacat aaccatctca aatgaggcgc
     1501 tgaatgcaga cgagtttgca ttgtcatttt ctgacatgtt aattaagttt gatttccaat
     1561 gaccggacaa taaccatgcc ggcttaccat ccttatcatt ctgaatgctg cctatgttac
     1621 cgaacagaaa tttaccttca ccataaatgc tcggagggaa cgcgctcact tttcctatag
     1681 acagtacagc ggagcttccc ataataagaa accctattgc agtcactccc aaagccaggc
     1741 cgtattcctt caaaatactt ttcattcata gtaataatgg gagaagctta acttaaaggt
     1801 aactcaattc aactccataa cagctactca ctaaaataag gcgttgagat tatcgtacat
     1861 gtggatatga tatttttaaa agctcacgac tgagatatat tctatgttga cttgaaaagg
     1921 acgtatggag catcagatct gaagtcaatt tatagagtta caaacccatg tatccagttc
     1981 agtagttatg tttaggactc atcattgaac attcaaggat cattttacat aaattcaaaa
     2041 atatttgcga cgattagaat attgacgatt attttgcgat caacgagtag ttgggaatat
     2101 cacaacgctg aataactatc atcatgaaat atttatttag agatcctact cttgaaagct
     2161 tgctttcaat agttattatt acatcggcag ttaattcttc attgacagca ttacttggta
     2221 gagccataat tggaaaatgg tgtgatgcaa agtgcaccaa cgacctcgca aggaattgga
     2281 aaaggtgacc taccaaatgg tttctcctgt cgttacgtca tatgccttgt aatatatgag
     2341 atccttattt ctagggctaa agctgtgttc ataaccctat acacactcca ttttacgtgg
     2401 gggaagaatt taacgtagag caagttgaaa ttataaatgc tggaaacaaa aattagcgcg
     2461 taggcgaagg gttattgaag catccactaa ctccgaatag aattgttgtt ctcgtggccg
     2521 cattaatgtt catgacgaac agttgtctat gtaatcctaa taacgcagat ggtgacgggc
     2581 ttacccaggc aaatatggtg gcttcacaag acaataataa gaaggcaact ctttttgttg
     2641 gaatatctcc tttatt
//
LOCUS       DASSIK010000258         2270 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_948061, whole genome shotgun sequence.
ACCESSION   DASSIK010000258 DASSIK010000000
VERSION     DASSIK010000258.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2270)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2270)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2270
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_948061"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(78..1592)
                     /locus_tag="VFI64_04895"
     CDS             complement(78..1592)
                     /locus_tag="VFI64_04895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242659.1"
                     /translation="MAQPSDPNLVQNSKGQAIERFEKQFCGLDSKPHNNDYITEYLLP
                     QRCEMPLGILASNNSVWYISTKHGVLGSLDVSGKKFQEIMIPFWNTRSNPIDLSQSWD
                     VEADSKGNIWFTDERQNGVWKYEVDSGKFSFFPVPESPKDFGTTYPVAIAFDEKDNIY
                     FVGIRSKSLWFGNVTEMQNNSSKGINSIPLPISDFKGIDPALLSTGSLQIDNKRNVIW
                     VSMLAFGIKGEIFKYDIKSNVSWPYGLPANLNSPVGIVLDENGNPWVSDHGTSIFFLL
                     NATNGKVTKFTTAPASPRISPGIEKDSNAYTLPYWIKKDSNGSFWFNEHTGNKIGKFD
                     PKNRILNEYWIPTQNPLWARCELPTTTACGISNALQFSIGKNNELWFSEWTENKLGML
                     NTSSPIPFKVSIADANINIKRGETKEIPVIVSTDKQVDLRMIASSTLTPTGGFGNSTT
                     SFSQDSVSVLPGEEKKISFLITPSMDTTPEDYTFMIGVENDQVSYMKAISVKIV"
     gene            1946..>2270
                     /locus_tag="VFI64_04900"
     CDS             1946..>2270
                     /locus_tag="VFI64_04900"
                     /inference="COORDINATES: protein motif:HMM:TIGR00149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="secondary thiamine-phosphate synthase enzyme
                     YjbQ"
                     /protein_id="HET7242660.1"
                     /translation="MKSKTQYLYFNTKTRIAFVNITDQVQKLIEESKIKEGICLVNAM
                     HITSSVFVNDNESGLLKDFEKWLERLAPHSPTNHYQHNNTGEDNADAHLKRQVMGRET
                     VVAVTD"
BASE COUNT          700 a          420 c          432 g          718 t
ORIGIN      
        1 acttggcgta atacttactt cataattctt aaaatcgaga aatacgaaat taaggcaatt
       61 cagttttcaa tagtagatca tacaattttt acgctaatcg ccttcatata tgaaacttga
      121 tcgttttcta ccccgatcat gaatgtgtaa tcttcagggg ttgtgtccat cgaaggagtg
      181 atcaaaaagg atatcttttt ttcctcgccg ggcagcaccg aaactgaatc ttggctaaag
      241 gaagtagttg aatttccaaa tcctcctgtc ggagtgagag ttgaagaggc gatcattcta
      301 agatctacct gcttgtcagt agaaactata actggaattt ctttagtttc tcctcttttt
      361 atattgatat tcgcatcagc tatactgact ttgaatggaa taggggacga tgtgtttagc
      421 atacctaatt tattttccgt ccactcactg aaccacaatt cgttattttt tcctatcgaa
      481 aattgtagtg catttgatat gccacaggct gttgtcgtag gcaactcaca tcttgcccaa
      541 agtgggtttt gcgtgggtat ccagtattca tttaagatgc ggttctttgg atcaaatttg
      601 ccgattttgt ttccagtatg ttcattgaac cagaatgagc cgtttgagtc ttttttaatc
      661 cagtaaggga gagtataggc attgctatcc ttttctattc caggtgaaat cctcggagag
      721 gcaggagctg tagtaaattt tgtaactttg ccatttgtgg catttaatag aaagaagatg
      781 ctggtgccat gatctgaaac ccatggattc ccattttcat ctaaaacaat ccctacagga
      841 gaattcaagt ttgcgggcaa gccataaggc caacttacat tactttttat atcatatttg
      901 aaaatttctc cttttatacc aaatgccagc atcgaaaccc aaatcacgtt tctcttattg
      961 tcaatttgta gagaccctgt gctaagaagg gctggatcta ttcctttaaa atcagaaatc
     1021 ggtaatggaa ttgaatttat tcctttggat gaattattct gcatttcggt aacgttgcca
     1081 aaccaaagtg actttgaacg aatacctacg aagtatatgt tgtctttttc atcaaaggct
     1141 attgccacgg gatatgttgt tccaaaatcc tttgggctct caggaacagg aaagaaactg
     1201 aatttacccg aatctacttc gtacttccaa acgccgtttt gtctctcatc tgtaaaccag
     1261 atatttccct tcgaatcagc ctccacgtcc cagctctggg ataaatcgat aggattggaa
     1321 cgtgtattcc aaaatggtat cataatttcc tggaatttct tacctgagac gtcaagtgat
     1381 ccaagaaccc catgcttggt ggaaatgtac cacacagaat tgttcgatgc taatatgcct
     1441 aacggcatct cacatctttg ggggagaaga tattcggtaa tgtagtcgtt attatgtggt
     1501 tttgaatcta gaccgcagaa ttgtttctca aacctttcaa ttgcctgacc tttagaattc
     1561 tggacaagat ttgggtcaga gggttgagcc aatgaaagta aactgtcgta atttagggtc
     1621 agaaaataag ttgttatcgc gagtagtgta atcattagaa aaagagtaaa aaacttccga
     1681 tatgaatgag cgtgaataag tgacatcgtt ttcatgaacc tactcacaca tatttataat
     1741 atatttctag tgaacgtgta tttagattct ttcaagagtt atccatccat tatcagggcc
     1801 tgatgatcca atccaaaatt acaaggtaca cttctagaga atttcacatt aattattcag
     1861 gtttatccac ataaaacttg gttgacattc aagaaagtta aattgattta aatgtaattt
     1921 atacataatt ggttctatac tgcatatgaa atccaaaaca caatatctgt actttaatac
     1981 taaaaccagg atagcattcg taaacattac agaccaggtg caaaaattaa tagaagaaag
     2041 caagataaag gaaggaattt gcttggttaa tgctatgcac attacttcta gcgtctttgt
     2101 gaatgataat gaaagtggtt tactaaaaga ttttgaaaaa tggttggaac gattggcacc
     2161 acattcgcca acaaatcatt accaacacaa taatactgga gaagacaacg ctgacgctca
     2221 cctaaagcga caggtcatgg gaagagagac agtagttgca gtaactgacg
//
LOCUS       DASSIK010000259         3085 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1354427, whole genome shotgun sequence.
ACCESSION   DASSIK010000259 DASSIK010000000
VERSION     DASSIK010000259.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3085)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3085)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3085
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1354427"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            120..452
                     /locus_tag="VFI64_04905"
     CDS             120..452
                     /locus_tag="VFI64_04905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242661.1"
                     /translation="MKKNIAMQNTRERLSLADISPVWHYRLYEHTLPLPFSLTWLKWY
                     FELKVASKCVVGEAYKYDSSYLVECSRCDYFGWKFMIYFTLRSRTKLEKNKNAFLVHW
                     TNEHLGIC"
     gene            complement(1058..1423)
                     /locus_tag="VFI64_04910"
     CDS             complement(1058..1423)
                     /locus_tag="VFI64_04910"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HET7242662.1"
                     /translation="MQRRILVVDDEAKTTDEIRAGLENSGYLADIYNDPETVLSNFKS
                     GIYDLLVLDVGLPHMDGFALYEKIRDLDGKVKVCFMSDSNAHDEEFLTLFPIWNARDF
                     FHKPVMIRDLIEYIKETEV"
     gene            complement(1586..1852)
                     /locus_tag="VFI64_04915"
     CDS             complement(1586..1852)
                     /locus_tag="VFI64_04915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2024 family protein"
                     /protein_id="HET7242663.1"
                     /translation="MLMECAVYDTYVTKKDGKTMHFDVIVEASSPHEKAIEYGKEFLN
                     TVGQGAQKMTQEECQFCHIQEAPAMVESGIKEKGYFIQKMEGCP"
     gene            2022..>3085
                     /locus_tag="VFI64_04920"
     CDS             2022..>3085
                     /locus_tag="VFI64_04920"
                     /inference="COORDINATES: protein motif:HMM:NF016310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitase X catalytic domain-containing protein"
                     /protein_id="HET7242664.1"
                     /translation="MHLSKQDEKALDGEFGSSLSVAYKILLAIGEATEAEKLVSIEWA
                     HISGVNYNTIGDAGLKFLTEFSKDARVSVQTTLNPMGYDKHKKSIISDKFQDKQTSIV
                     KSYMKMGILPSFSCVPYEIFDMPRKGTHVSFAESSAAIMANSMYGLLTNKESALSALA
                     SAITGKAPYSELHNEELRRPTAQVGVDTPLSNELDYGLLGYFAGNAISKSCVSLGCHG
                     KDLNIMKAKSLSAALGTAGSCGMFAQEETNSEKIGFGKKEKDTVRDELNTTDNGDLIA
                     LGSPQLGINELELISKSVVGKKFSKPCMIFCPRAIFNEAFKLGIAQQIENAGGNLICD
                     ACTCLTPLITSDEYDGIITN"
BASE COUNT          994 a          586 c          570 g          935 t
ORIGIN      
        1 tgttgatttc tactggttta aggaagtcaa gatcaattta ttgtgaatta ttgtatattg
       61 cctgagaaaa tataagaatt ccagtaacta ctaatatcat ggatgaatat tagaaataaa
      121 tgaaaaaaaa tatagcgatg cagaacacga gagagagact gtcactcgct gatatatctc
      181 ctgtttggca ttatcgcctc tacgaacata cacttccttt accattttct ctcacttggt
      241 tgaaatggta ttttgagctt aaagttgcat caaaatgcgt tgtgggcgaa gcatacaaat
      301 atgattcgtc ctatttggtc gaatgttcaa gatgcgatta tttcggatgg aaattcatga
      361 tatattttac tttacgatca aggacaaagt tagagaaaaa taagaatgca tttcttgtac
      421 attggaccaa tgaacatttg ggaatatgtt aacaatgtcg atccttgaat tcaataaaac
      481 aataaataga aaggacaaac tgacttttcc atatttattt aagattttgt tgcagatcaa
      541 tacaataaac ttacacaaaa agacttcaaa ttcgtgaaat aaatctatca accaacagga
      601 acagaggtca ccataagttg gggggacagt ctttcatgct aagatttagg cttctttcta
      661 gtagaatctc aattcttgaa tcggtgttta cgatgacata cacacgtaac gctgccgccg
      721 aattctgaat aataactccc ctatcacatt tgcacgttta cctctttgaa tgtttgttat
      781 ttcttgatca ccccaaaaac agttttccaa tttgacggtc gtgtaagttt atcagatccc
      841 aaattgattg aacaattacc ataactattc ctgatgctga gagcaattga agaaattcca
      901 tacaaagcgt ttcagacaat tgatatcaga agtcattagt aatgatgtcg cagttaggac
      961 tagacatgca tcacagaatg cctaaggcaa taagctcaaa tttagttaat ttcaagaatt
     1021 acggagcaga aataatcacc gaaattcgca ttggattcta tacttctgtc tctttaatgt
     1081 attcgatcaa atccctaatc attactggtt tatgaaaaaa atcccgggcg ttccatattg
     1141 gaaacagtgt aaggaattcc tcgtcgtgcg cattagaatc agacataaaa cataccttta
     1201 ctttgccatc gagatctctt attttttcat atagcgcaaa tccatccata tgtggtagtc
     1261 ctacgtctag aaccaagaga tcataaattc ctgatttgaa attggacaat actgtttcag
     1321 ggtcgttata aatgtcagct aaataacccg aattttctaa ccctgccctt atctcatcag
     1381 ttgtcttggc ttcatcgtca acgactaaaa ttctcctttg catcagatat taaaaatttt
     1441 atttgactca cctaataatt tatttcgtaa atattttttc acaagtacac aaagaactta
     1501 taactaaaat tagataacga tccttagaat tgtattaatt cttgatattt agtgtaaaaa
     1561 cagaaagaaa aaaatttagt tttggttatg gacaaccttc catcttttga ataaagtatc
     1621 ccttttcttt aatcccgctc tccaccatgg ctggtgcctc ctggatatga cagaattggc
     1681 actcttcctg agtcattttc tgtgctccct gccccacagt attcagaaat tcctttccat
     1741 actctatggc cttttcatgt ggagaagatg cttcaactat cacatcaaaa tgcattgtct
     1801 tcccgtcttt ttttgtaaca taggtatcgt atacagcaca ttccataagc atactcttca
     1861 aatactctat ttattccatt tctttgtgga cgcatcttct gcgggcttga tctgagttct
     1921 gaacaggtaa tgcaaagtca aggttatata cacgaaccag aaaaaaaccg actttggaga
     1981 tctgctattg taataaataa gtcctgctac aaatatgtgt agtgcacctt tctaaacaag
     2041 atgagaaggc acttgatgga gaatttggct cttcgctttc agttgcatat aagatattgc
     2101 tggcaattgg agaagccacg gaagctgaaa aattagtgag catagaatgg gctcacattt
     2161 caggagttaa ttacaatacg ataggggatg cggggcttaa atttctgacg gagtttagca
     2221 aagatgccag agtttcggta caaactactc taaatccaat gggctacgac aaacataaga
     2281 aatcaataat ttcggacaag tttcaagata agcaaacaag tattgtgaaa tcgtatatga
     2341 agatgggaat tctcccatca ttttcctgcg tcccatatga aatcttcgat atgccaagaa
     2401 aaggcaccca tgtgagcttt gcagaaagca gcgctgccat tatggccaac tctatgtacg
     2461 gattactaac aaataaggaa agtgccctca gtgccttggc tagtgccatt actggtaaag
     2521 ccccatactc agaacttcat aatgaggagc tgcgacgacc aacagctcag gttggagttg
     2581 acacgcctct ctcaaatgaa ttggattatg gcttacttgg ttacttcgca ggtaacgcga
     2641 taagcaaaag ttgtgtatct ctgggctgtc atgggaaaga cctgaacata atgaaggcta
     2701 aatctttatc tgctgcactt ggaactgccg gctcttgtgg aatgttcgcc caagaagaaa
     2761 ctaacagtga aaaaattggg tttggaaaaa aggaaaagga cactgttaga gatgagttga
     2821 acacgacaga taacggggac cttattgcac tcgggagtcc tcaactaggc ataaacgagt
     2881 tagaattgat atcaaagagt gtagttggaa agaaattctc aaaaccttgc atgatctttt
     2941 gtccccgtgc catttttaac gaagccttca agttgggcat agctcagcag atcgagaatg
     3001 ctggaggaaa tttaatttgt gatgcctgca catgtctcac tcctttaata accagtgacg
     3061 aatatgatgg tataatcaca aacag
//
LOCUS       DASSIK010000260         2129 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_544219, whole genome shotgun sequence.
ACCESSION   DASSIK010000260 DASSIK010000000
VERSION     DASSIK010000260.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2129)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2129)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2129
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_544219"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1402
                     /locus_tag="VFI64_04925"
     CDS             <1..1402
                     /locus_tag="VFI64_04925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-hydroxylase N-terminal
                     domain-containing protein"
                     /protein_id="HET7242665.1"
                     /translation="PSINAVAETYELAIQEPELGSTLSPMTGKSINRFLHIVENADDL
                     VNQNRMQRKLGQLTGTCFQRCVGMDALNSIYSTTYEIDLKHGTDYHKKFKEFVKMVQS
                     ENLVIGGAMTDVKGDRSLTPSQQEDPDMFVHVTKRDNSGVYISGAKAHQTGCINSHWI
                     IVMPTMRLREEDKNYALVGAVPADAEGITYIYGRQSCDTRSTEEGDIDSGNAKFSGQE
                     AMMILDNVFIPNERIFMDGEVEFASMLVERFTCYHRRSYVCKTGLGDVLIGAAAAVAD
                     YNGVSNASHIKDKLVEMTHLNETIFAAGIASSHQAHKMPAGNYQNDDMLANVCKHNVT
                     RFPYEIGRLAQDIAGGLMVTMPSEKDFRSPYTGPLLEKYLRGRKGVSTENRMRILRLI
                     ENMTLGRNAVGYLTESMHGAGSPQAQRIQIARQMQLGYKKKLAKDLAGVDEGESNHRE
                     QEQSDYFDRIFGLKQS"
     gene            complement(1500..1667)
                     /locus_tag="VFI64_04930"
     CDS             complement(1500..1667)
                     /locus_tag="VFI64_04930"
                     /inference="COORDINATES: protein motif:HMM:NF003161.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L40e"
                     /protein_id="HET7242666.1"
                     /translation="MPITDATKKQIAQQRMLFFKICFNCGGKNPILATRCRKCHGKHM
                     RLKNRTLGAKK"
     gene            1852..>2129
                     /locus_tag="VFI64_04935"
     CDS             1852..>2129
                     /locus_tag="VFI64_04935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HET7242667.1"
                     /translation="MQDNVFKSLVGIWPDFPRNGVLFKDINPVLRNNEALNYITEKLS
                     EQLVSNQIDMVAAIESRGFIIGSLLAMKLNKGLILMRKAGKLPGPTVS"
BASE COUNT          673 a          396 c          467 g          593 t
ORIGIN      
        1 gccttcaatt aatgctgttg ctgaaacgta cgagttggct attcaagaac cagaattggg
       61 atctacacta tcgccaatga ccgggaaaag cattaacaga tttttgcaca tagttgaaaa
      121 tgcagatgat ctagtgaacc aaaataggat gcaaaggaaa ctaggtcagc ttactggaac
      181 atgttttcag cgatgtgtag gaatggacgc cttgaactcc atatattcca ccacttatga
      241 gatcgatctt aagcatggta ccgattatca caagaaattt aaagaatttg taaagatggt
      301 tcaatcagaa aacctagtaa ttgggggagc aatgactgat gttaaaggag accgtagttt
      361 aacaccctca cagcaagaag atccagatat gtttgtgcat gttactaaaa gggataactc
      421 gggtgtatat atatccggag caaaagctca tcaaactgga tgtataaatt cgcattggat
      481 tatagtcatg cccactatgc gtttgaggga agaggacaaa aactatgcct tggtgggagc
      541 cgttccggct gatgctgaag gcattactta catctacggt agacagtcct gcgacactcg
      601 gagtactgaa gagggcgata tagattcagg aaatgcaaag ttttctgggc aagaagcaat
      661 gatgatcctt gataatgtgt tcatccccaa tgaacggatt tttatggatg gtgaagttga
      721 atttgcatca atgctagttg agcggtttac atgttatcat agaagaagtt atgtgtgtaa
      781 aacaggcttg ggtgatgttc tcataggagc agctgctgcc gtagctgact ataatggcgt
      841 ttccaatgct tcacatataa aagacaaatt ggtggaaatg acccacctta acgaaactat
      901 ttttgctgct ggtattgcat cgtcacatca agcacataaa atgccggcag gaaattatca
      961 aaacgatgac atgttggcta acgtatgtaa acacaatgta actagatttc catatgaaat
     1021 agggagactc gcacaggaca tagccggggg gcttatggta actatgcctt ctgagaagga
     1081 ctttagaagt ccttacactg gtcccttgct cgaaaaatac ctcagagggc gtaaaggcgt
     1141 ctcaacggaa aataggatgc gcatactgag gttgatagaa aatatgacac taggtagaaa
     1201 tgctgttggc tatctgaccg agtcaatgca cggcgctggc tcgccacaag ctcaaagaat
     1261 acaaatcgct cgacaaatgc agctcggata caagaagaaa ttagcaaagg atttggctgg
     1321 tgttgacgaa ggagaatcaa atcaccgtga gcaggaacaa tcagattact ttgacagaat
     1381 atttggattg aaacaatcct gaaaatctcg ctctttccat tctcttaatt gtgatagtaa
     1441 tcttccatct ttaaaggtag acaacttcaa agatttgaat tattactaat aaataggcct
     1501 tactttttag cacccagtgt cctatttttc aatctcatgt gttttccgtg gcactttcta
     1561 catctggttg caaggatggg gttcttccct ccgcagttaa aacaaatttt gaaaaacaac
     1621 atacgctgct gtgcaatctg tttcttggtt gcatctgtaa taggcataca ttatttgtgc
     1681 aagaatggta aatttttacc tttctataac tagaggcaag tactggaaat atatcaacta
     1741 atcctggcgc caaaatgcaa ccaattactc ctttagtgta ctcgttctat aactaattca
     1801 aacgttctta gcaacgttaa ttatatgtcc acttgagagt aagcaaacat tatgcaagat
     1861 aatgtattca aaagcttggt agggatatgg ccggattttc cgaggaatgg cgtattattc
     1921 aaggatatta atccagttct aagaaacaat gaggcactaa attatatcac tgaaaagctc
     1981 agtgagcaat tggtctcgaa tcagatcgat atggttgctg caatcgaatc tcgcggattc
     2041 ataattggat ctttgctggc catgaaacta aataagggcc tgattctcat gcgaaaggcg
     2101 ggaaaacttc ctgggcctac cgtctctga
//
LOCUS       DASSIK010000261         3396 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_56963, whole genome shotgun sequence.
ACCESSION   DASSIK010000261 DASSIK010000000
VERSION     DASSIK010000261.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3396)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3396)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3396
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_56963"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(228..1901)
                     /gene="ilvD"
                     /locus_tag="VFI64_04940"
     CDS             complement(228..1901)
                     /gene="ilvD"
                     /locus_tag="VFI64_04940"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004160 - dihydroxy-acid dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009099 - valine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HET7242668.1"
                     /translation="MLVSRTVVDGPSRAPHRAMYKAMGLNDADLSKPMVGVSSTCNEA
                     TPCNIHLGQLAQFAKKGVKDCGCTPREFTAISVSDGIAMGHEGMKASLVSREVIADSI
                     ELMMRAHRYDGLVGISGCDKSLPGTMMGMARINLPSIFVYGGTILPGIWNGKAVTVQD
                     VYEAVGAFDAGKMTIEELTSLENVACPSAGSCGGMYTANTMACVSEALGIALPGSAGP
                     PAESVRRHQICYETGKKIFDLLENNIRPKDILTFESFENAITIVNSIGGSTNAVLHLI
                     AISKEMGVKLTLRDFERIRKRTPHIVDMRPGGLYVMVDLDRVGGVPLILKSLLKQGLI
                     HGDALTVSGRTMEENLETVEFGTNSGEPVVKKFERPIHQQGTLKILYGTLAPEGAVIK
                     IAGLESTKFEGRAKIFNSEEEAFKAISLQRIKKGDVVIIRYEGPKGGPGMREMLAVTA
                     ALVGQGLGTEVAIVTDGRFSGATRGIMIGHVSPEAMTGGPISLVKNGDRIMIDLTKSK
                     IDVMVSKKELARRKKSWHPVKPRYKTGVLAKFALLTRSASEGAVTIPVN"
     gene            complement(1983..2171)
                     /locus_tag="VFI64_04945"
     CDS             complement(1983..2171)
                     /locus_tag="VFI64_04945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242669.1"
                     /translation="MPETIELDHFELSFTFNCPKCDYKNEEISARDIANGNAECGMCE
                     TLFKVEGIDGIKVIAILD"
     gene            2279..2710
                     /locus_tag="VFI64_04950"
     CDS             2279..2710
                     /locus_tag="VFI64_04950"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HET7242670.1"
                     /translation="MKTNSCIFCSIVSGVLKASLVYENSSFLAFLDRYPFTFGHTLVI
                     PKKHSEDILQMSDAEVGRLYCIVSLIAKTISKTVKAEGLNIGQNNGRAANQIVPHVHV
                     HIIPRFTNQQNMNGRWPLRRPAKDEELEELSKKIRSALPPA"
     gene            complement(2764..>3396)
                     /locus_tag="VFI64_04955"
     CDS             complement(2764..>3396)
                     /locus_tag="VFI64_04955"
                     /inference="COORDINATES: protein motif:HMM:NF015430.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HET7242671.1"
                     /translation="VFIEQHKVSGLIVGGPGPTKENFLKAEHLDYRLLNNIIATMDCS
                     YSGDEGIREIVDKLNSQGILSDYRLMEEKKLMKEFMTEVYSGKGLAIYGLQDVLKSLE
                     SGIVGTLMMIDEIPFVKIEAKCNRCGNVRNKYVERMNLVNTKQLTMSEPCPNCGATDS
                     TISEKDIVDELEELSQRTGTRMEVISSKTEEGIQLASLGGVGGILRFMPR"
BASE COUNT          929 a          787 c          582 g         1098 t
ORIGIN      
        1 aataagaaca accatctctg attcataaat ccactatcct tagatatagt ttaaactcat
       61 tcaaggctat tataattgac tcattggcac taatgtttag tgtctacaac caagttttca
      121 ataattgtca tcgagatatt cttgttatta atagtcgcca ataatcaata ttgcgtaata
      181 atctattgcc gaacccgttg ttcactagtg aacatctaat tccttgttca atttactgga
      241 attgtcacag cgccttcgga agcagaccta gtaaggaggg cgaattttgc caacactcct
      301 gtcttgtatc gtggtttaac tggatgccaa ctttttttgc gacgtgcaag ttcctttttt
      361 gagaccatga catctatttt gcttttagtt aaatcaatca tgattctatc tccattcttc
      421 actagcgata ttggtcctcc ggtcatagct tcaggagaaa catgtcctat cataatacct
      481 ctagtcgctc cggaaaatct gccatcagtt acgatcgcca cttcagtacc caatccttgt
      541 ccaaccaaag ctgcagtaac agccaacatt tccctcattc ctggtccacc tttcgggcct
      601 tcgtatctaa ttatgacaac atcgcctttc ttgatccttt gtagtgaaat tgctttaaat
      661 gcttcctctt ctgaattgaa tattttagca cgtccttcaa atttcgtact ttccaaacca
      721 gctattttta ttactgcgcc ctcaggagca agtgtaccgt aaaggatttt gagcgttcct
      781 tgctgatgga tgggtctttc gaatttcttt actacgggtt ctccagaatt cgttccaaac
      841 tcgaccgtct ctaagttttc ttccatagtc cttccagaaa ctgttagtgc atcaccatga
      901 ataagtcctt gttttagtaa actttttaaa atgagaggaa caccaccaac tctgtcaagg
      961 tcaaccatta catatagtcc cccaggtctc atatccacga tgtgaggcgt acgtttgcgt
     1021 attctttcaa aatctcgtag agttagtttt actcccattt ctttagatat tgcaatcagg
     1081 tgtaataccg cattcgtaga acctcctatt gagtttacga tggtgattgc attttcaaat
     1141 gattcaaatg taaggatatc ttttggtcgg atgttattct ccaggagatc gaatattttt
     1201 tttccagttt cgtaacaaat ctgatggcgt ctgacgcttt cagcaggtgg accagcgctt
     1261 cccggcaaag cgatccccaa tgcctcacta acacatgcca ttgtatttgc tgtatacatg
     1321 cctccgcatg aaccggcaga aggacaggcc acattttcca ggcttgttaa ttcttcaata
     1381 gtcatttttc cagcgtcaaa tgccccgacg gcttcgtata catcctgtac tgtgaccgcc
     1441 ttcccgttcc atatcccagg caatatagtt ccgccataga cgaagataga tggtaaattt
     1501 attcgggcca tgcccatcat agttccaggc aaacttttgt cacaaccaga aataccaacg
     1561 agtccgtcat atcgatgagc tctcatcatg agttctatag agtcagcaat gacttctcta
     1621 ctaaccaacg aggccttcat tccttcgtgg cccattgcta taccatcaga aactgaaatg
     1681 gctgtgaatt cccttggagt gcacccacag tctttaacgc ctttctttgc gaattgagcg
     1741 agttgtccaa gatggatgtt acaaggagta gcttcattgc acgtcgaaga tactccaacc
     1801 attggctttg acaaatcagc gtcatttaat cccattgcct tatacatggc tctgtgagga
     1861 gcccgggaag gtccatctac aactgttctg ctaactaaca attcagtata tcaagaaaaa
     1921 tactatattt taatatttta attatttaag atcctacggt atcagtaaat ccatgatggt
     1981 ctttagtcca aaattgctat tactttaatc ccatcaatcc cctcaacttt aaacaatgtt
     2041 tcacacattc cacattctgc atttccattt gcgatgtcac gggcagagat ttcttcattt
     2101 ttgtaatcgc atttaggaca gttaaatgtg aaacttaatt caaaatgatc tagctcgatt
     2161 gtttctggca ttcactatgt aagacaaatt ctggtgtatt taaaagtcgc gacaccgcgg
     2221 atgcattagc atctaaaaga ttaaatcatg aattactgtg gtatttttac aagatgatat
     2281 gaaaacaaat tcttgtattt tttgttcaat tgtttcaggt gtcttgaaag cttcgctggt
     2341 gtatgaaaat tcttcatttc ttgcattttt ggatagatat ccttttacct ttgggcacac
     2401 tttggtgatc ccaaaaaagc attctgaaga cattctccaa atgtctgatg ccgaagttgg
     2461 aagactatat tgcattgtct ctttaattgc aaagactatt tcgaagacag tgaaagcaga
     2521 aggtctcaat attggccaaa ataatggacg agctgcaaac caaatagtac cgcatgtcca
     2581 tgtccacatt attcccagat tcacaaacca gcagaatatg aatggcagat ggcccttaag
     2641 gcgacctgct aaagatgaag aattggagga actatccaaa aaaataagat cagcattgcc
     2701 tccagcctag agagaactgg gtatattctc aactgtatcc tttttttcct gaaaagctca
     2761 ttactatctt ggcataaacc gaaggattcc acctacgcct cccaggcttg ctaattgaat
     2821 accttcctct gttttggaag aaatcacttc cattcttgtc cctgtccttt gtgacagctc
     2881 ttcaagctca tctactatat ccttctctga tatagtagag tcggtagccc cacagtttgg
     2941 acacggctcc gacattgtca attgctttgt atttactaaa ttcatcctct caacatactt
     3001 atttctgacg ttaccacatc tgttgcattt agcttcgatt ttaacaaaag ggatttcgtc
     3061 aatcatcata agggtgccaa ctattccact ttcgagtgat ttcaaaacat cttggagtcc
     3121 ataaatagcc aatcccttcc ccgagtatac ttccgtcatg aattctttca tcaatttctt
     3181 ctcttccata agtcgatagt ccgataagat cccttgagag ttcagcttgt ccacaatttc
     3241 ccttatccct tcatcccccg aatatgaaca gtccatggtg gcaattatat tatttaaaag
     3301 cctgtagtct aggtgttccg ctttgagaaa attctccttg gtgggtcccg gacctcccac
     3361 aattagaccg cttaccttgt gctgttcaat gaaaac
//
LOCUS       DASSIK010000262         2192 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_446341, whole genome shotgun sequence.
ACCESSION   DASSIK010000262 DASSIK010000000
VERSION     DASSIK010000262.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2192)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2192)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2192
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_446341"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            143..1195
                     /locus_tag="VFI64_04960"
     CDS             143..1195
                     /locus_tag="VFI64_04960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242672.1"
                     /translation="MPFTMTFGFSVVTLLTISVIIAITPSVSNLATWALENNDVTASD
                     GENLQYVIYENSTFGIRIEFPRQWEFDVAENISENPLMVVYFYNNPDVPLGDFVIEIE
                     KLGSLDSIGEYVANTINQYSQNAPEFKLLSMSMNDKLGGLRAYSILYSERYNSTSLLK
                     TLEVGTIRGSQVYFIQFYALADHFERNLPIAKKMINSIEFINAGYGQSSQSYCPVNSD
                     HQHATFAIVLNNSTVDFSQEKYQLQIPLIHVENGDGKTIHRHASNIPFLHFLNSLGMN
                     IIRDCFILDNGTKYCGNDKAKLKFFLNGNQVSSISNYVIRQGDEILVIYGNDSPRDIN
                     NRLIMLNPSVKPLFPH"
     gene            1270..1545
                     /locus_tag="VFI64_04965"
     CDS             1270..1545
                     /locus_tag="VFI64_04965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242673.1"
                     /translation="MTSTMLVFYRFRSMNDQEKEKANKQWHELKNSLPAGIELLGEYD
                     HAWGTEYNGFLLFEAETSDMFLDWWAGFKDKVRWYVDQTHTIVARRR"
     gene            1747..>2192
                     /locus_tag="VFI64_04970"
     CDS             1747..>2192
                     /locus_tag="VFI64_04970"
                     /inference="COORDINATES: protein motif:HMM:NF014795.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-binding protein"
                     /protein_id="HET7242674.1"
                     /translation="MTCKSSDTMESQKAHTTLGEYLINQLYSLNVHHIFGIPGDYVLG
                     FYDQLTKSKIKIINTCDEQSAGFAADAYARVRGLGAVCVTYCVGGLKIVNSTAEAYAE
                     KSPVVVISGAPGLPEKKKTPLLHHRVRDFNTQRDIFSNVTIASTIL"
BASE COUNT          694 a          390 c          444 g          664 t
ORIGIN      
        1 tcaagttcga tagatatact ctctcttttg atctagtaaa aaattactca gaatcttcaa
       61 ccatgaagat tgtttgtggc aatttaaatc aaattaggag taccacaact taagtaggag
      121 gtttttagca taggtcaata gaatgccatt caccatgacc tttggttttt ctgttgtgac
      181 ccttttgaca atatctgtta ttatcgcaat tacaccttca gttagtaacc ttgccacttg
      241 ggccctggaa aataatgacg tcacagcatc agatggtgag aatctacaat atgtaatcta
      301 tgagaactca acatttggaa ttcgaattga atttcctagg cagtgggaat ttgatgttgc
      361 agaaaacata tctgaaaatc ctctaatggt ggtttatttc tataacaatc ctgatgttcc
      421 tcttggtgat ttcgtaatag aaatagagaa attgggcagt cttgatagca ttggtgaata
      481 cgttgcaaac acaataaatc agtacagtca aaacgctccc gaattcaagt tactttctat
      541 gtccatgaac gataaactcg gcggattgcg ggcctactca attttgtaca gcgaaaggta
      601 taactccaca agtttgttga agacacttga agtcgggacg attcgaggaa gtcaagtata
      661 tttcatacaa ttttacgctc ttgcagatca ttttgaaagg aatctcccaa tcgcgaaaaa
      721 aatgataaac tcgatcgaat ttattaatgc gggttatggt caatcatctc aatcttattg
      781 tcctgtcaac tctgatcacc agcatgcaac atttgcgata gtccttaaca actcaacagt
      841 tgacttttct caggaaaaat atcaacttca aatcccattg attcacgtcg aaaatgggga
      901 tggtaaaact attcacagac atgcatccaa tataccgttt ttacactttt tgaacagttt
      961 gggcatgaac ataattcgag attgctttat ccttgataat ggaacaaagt attgtggcaa
     1021 tgataaagca aaattaaaat tctttttgaa tggaaatcaa gtgagttcaa taagtaatta
     1081 tgtcataaga cagggcgatg agattttagt aatctatggt aacgattctc cacgggatat
     1141 aaacaataga ctcattatgc tgaatccatc agtcaaacct ctctttcccc attagtgtat
     1201 agtttcttct actctcaaat cggtaatgcg aagatagatt aatacgttag atcggaatca
     1261 taagtagata tgacttcaac catgctggtg ttttataggt ttagatcgat gaatgaccaa
     1321 gagaaggaga aggctaacaa gcaatggcat gaactgaaaa atagtcttcc cgctggtatc
     1381 gaattactcg gagagtatga tcatgcttgg gggacggagt ataacggttt cttgctattt
     1441 gaagctgaaa ctagcgacat gtttttggac tggtgggctg gttttaagga caaggttaga
     1501 tggtatgtcg atcagacaca tacgatagtt gcaagaagac gttagaaact tactggaaaa
     1561 cttttcaaaa caatgcctaa gcaagatcag atttaaggct gttcgagaac tgatgcatga
     1621 agcatcgata ttacatggct tccgacgaca gatggaatgt gcatttattc gatcgaactt
     1681 ttcgatatca acatatcctt cggataagat agatgaagtt aattctttgg gccaaaatct
     1741 aaatctatga cttgtaaatc ttctgatact atggaatcgc agaaagctca tactacgtta
     1801 ggtgaatatc ttataaacca gctgtacagt cttaatgtcc atcatatttt tggtattcca
     1861 ggtgattatg tgcttggatt ttacgatcag ctgacgaaaa gcaagatcaa gatcatcaac
     1921 acctgcgatg aacaaagcgc aggatttgca gctgatgctt atgcaagggt tagaggacta
     1981 ggagcagttt gtgttactta ttgtgtcggt ggactcaaga tagtgaattc tacggctgag
     2041 gcctatgctg aaaagtctcc ggtggttgtc ataagcggag cccctggtct gcctgagaaa
     2101 aagaaaactc ccttattgca ccatagggta cgcgatttca atactcaacg ggatattttt
     2161 agcaacgtaa caattgcttc tacgatatta ga
//
LOCUS       DASSIK010000263         2548 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1146880, whole genome shotgun sequence.
ACCESSION   DASSIK010000263 DASSIK010000000
VERSION     DASSIK010000263.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2548)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2548)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2548
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1146880"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..328)
                     /locus_tag="VFI64_04975"
     CDS             complement(<1..328)
                     /locus_tag="VFI64_04975"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HET7242675.1"
                     /translation="MIILKFKRRMEKQENTAVVTGSSTGIGFETSLLLARSGFHTYAT
                     MRNTNKRKIIEKIANKENLPLEVLCLNVDNYQSVKKAIQKILDKSKQIDILVNNAGYG
                     LFGALED"
     gene            603..1067
                     /locus_tag="VFI64_04980"
     CDS             603..1067
                     /locus_tag="VFI64_04980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242676.1"
                     /translation="MNHIDCVRNLNLVFILSLVVIGIGGSYPFVLSSLYVSAQKNVNP
                     LVYHLSSDEPWRATVAISDATTLLKLGHNVTLLLSVEGVQIGVMHPHHYLGLNSLTGN
                     VTNFIADGGNVIICEVCLRIAGYNNSDIIDGAIIGKPEIISNLLSNATVIDY"
     gene            1248..1844
                     /locus_tag="VFI64_04985"
     CDS             1248..1844
                     /locus_tag="VFI64_04985"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HET7242677.1"
                     /translation="MITLSCLIIIAMTALLAQLINSYPMVNAANQIDRYWSGLTGDRQ
                     IPPVNTDARGYVGLKFDDDLGVFVFTVNAENIGNVTGIYVYKDDKNQDGSVVLDLLKA
                     EKERKINDIKILNVTSSGKLKGTLAAGGVTKDNLQGELKGKPISDFYNLMANGSIYVV
                     VHTKDFPNGEIRGNSFVPMDDLFPADSEINWDKAGNKQ"
     gene            complement(2127..2327)
                     /locus_tag="VFI64_04990"
     CDS             complement(2127..2327)
                     /locus_tag="VFI64_04990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242678.1"
                     /translation="MNGKLDLKVKRVLRASDVALVTTEWSFSGTGSNGKRVDITAKSA
                     DVLRQQPDGTWRFVIDNPWGTD"
BASE COUNT          806 a          464 c          439 g          839 t
ORIGIN      
        1 tatcttctaa agcaccaaac aaaccataac ctgcattatt taccaaaatg tcaatttgtt
       61 tacttttatc aaggattttt tgtattgctt tttttaccga ttgataattg tcaacattca
      121 agcataaaac ttctaatgga agattttctt tattcgcgat tttttcaatt atctttctct
      181 tattagtatt tcgcattgta gcatatgtat gaaatccact tcttgcgaga agcaatgatg
      241 tctcgaatcc tattccagtt gaactcccag taactactgc agtattttct tgtttttcca
      301 tcctcctttt gaatttcaat atgatcatga aaattgggtt tgtttccggt tatattctgt
      361 gtggattttg tctcaaaaat tatctgtact ataaacttcc agcattcatg gtggtttaat
      421 ccggaaccca tacttcattc aattcgaaac cttcgctgtc acttaattgt tgacaaagtt
      481 tgtttaaaag tcaaaacatt acgtaacctc aagtcatcac ttaattcata aatcataatt
      541 tcactatatg ccaaacactt ctttactagc tattttaaaa aatcaatgta tgtttgagat
      601 tgatgaatca tattgattgt gtaagaaatt tgaatttagt gtttatttta tcattagttg
      661 tgataggcat tggtggttca tacccattcg ttttgtcatc attatatgta tcggcacaaa
      721 aaaatgttaa tccactagtt taccacctta gcagcgatga accttggaga gcgacagtag
      781 caatctcaga cgccactaca ttattgaaat taggacacaa tgtaacacta ttactaagcg
      841 tagaaggagt acaaattgga gtcatgcatc ctcatcatta tcttggactc aattcactaa
      901 ctggaaatgt aactaacttt attgcagatg gtggaaatgt cataatttgt gaagtatgtc
      961 ttagaatagc tggctacaat aatagcgaca taattgatgg agcgattata ggaaaacccg
     1021 aaataatatc aaatttacta agtaatgcga ccgtaataga ttactaggtg caaagtatta
     1081 ttttattaca tttaaactgg agtaaacagt agttcacaac tttgtaacta aatagtagac
     1141 attgaaattc aagaaagaaa agaagaaacc accttatatc aacggttgca gtaattattt
     1201 attatctact ttagtgtcat ctaaatcata gaaaagggga gatctttgtg atcactttat
     1261 catgtctaat aattatagca atgactgccc tcttggctca attaatcaat tcttatccaa
     1321 tggtgaatgc cgctaatcaa atagaccgat attggagtgg tcttacggga gatcgccaaa
     1381 tacccccagt caatacagat gctcgtggtt atgtgggtct gaaatttgat gacgatttgg
     1441 gtgtttttgt atttactgtt aacgcggaaa acattggaaa tgtaactggt atttacgttt
     1501 acaaggatga caagaatcaa gacggaagtg tggtattaga cttgttgaaa gcagaaaaag
     1561 aacgtaaaat taatgacatt aaaatactca atgtaacttc aagtgggaag ttaaaaggaa
     1621 cacttgctgc aggcggtgta acaaaggata atcttcaagg tgaattaaaa ggaaagccta
     1681 tatcagattt ttataatttg atggctaacg gatcaatcta cgttgtcgta catacgaaag
     1741 attttcctaa cggcgaaatc cgcggcaatt catttgtccc aatggatgac ctatttccag
     1801 cggattccga aattaattgg gacaaagcag ggaataaaca atgatagatt aaacattttg
     1861 cgtagccatt cccatcataa gtattaccgc tattgccact acaagtagac cggctaggat
     1921 tagccagtaa taccacttca tttattttgc ttgggcctgt gcccatacgg gtttttgtat
     1981 ttactgactt aattatttgt agggatttac tctcctcgct ttctttctaa gaagataaac
     2041 ttatgttcac attaacaaca aaatactttg cttctcacgg aaatttaaaa atctagtaag
     2101 cgtaaagtaa ttcagtaaca acttgatcag tctgttcccc aaggattatc aataacaaat
     2161 cgccaagttc cgtcgggctg ttgacgtagt acgtctgcag atttagccgt tatatcaaca
     2221 cgtttgccat tagacccagt tccactgaat gaccattcgg tagttacaag agcaacatcg
     2281 cttgccctaa gtactctctt tactttgagg tccaacttgc cgttcatatc aatgaaaccc
     2341 cgcagacttt cgcgtatacc atctggactt ttagcaagct gtcctggtta agaagcaaaa
     2401 catgcgagag gttcatataa tgtcactaag gaatctagat ctccggcatt gataccttct
     2461 gtcaccgaat taagtacttc ttcaggtgtc atcttcccag acatttgatg atgttgtaat
     2521 acctgatact ataagtttac ttcctatc
//
LOCUS       DASSIK010000264         2002 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1147206, whole genome shotgun sequence.
ACCESSION   DASSIK010000264 DASSIK010000000
VERSION     DASSIK010000264.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2002)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2002)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2002
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1147206"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..890)
                     /locus_tag="VFI64_04995"
     CDS             complement(<1..890)
                     /locus_tag="VFI64_04995"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HET7242679.1"
                     /translation="MYSILVAFLIVNCTIYFQFNPSYAASPMSSPFDAERIQPGFNFA
                     VVGDMGCSSMTQKVINHINNKTPKLILALGDLSYQRSNADCWLDIVSPIESKMKIVLG
                     DHDYESDSLLKQYQSYFNLSQEYYSFNYENVHFIALATEIPFDMKSSQYNFIKNDLEV
                     VSKTPDIKWIIVFSYRPQYSTPTKHPGNSDIRAIYHPLFEKYQVDIVLQAHNHNYQRT
                     YPINYNQVESSSPIVTDNNPKTYEDPVAPLYITVGTGGATLHKFKGKESYVAAQYLGF
                     GFLDISITNNSRNLTGTFYD"
     gene            complement(1808..>2002)
                     /locus_tag="VFI64_05000"
     CDS             complement(1808..>2002)
                     /locus_tag="VFI64_05000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242680.1"
                     /translation="KINLSNTPNSDSTDVEISADEGKVAVTWWERSQTTNEPVIRISS
                     DGGKTFGPILKLASDGKIGG"
BASE COUNT          623 a          361 c          360 g          658 t
ORIGIN      
        1 ctgtcataaa atgtgccagt cagatttcga ctattattag ttattgaaat atctaagaaa
       61 ccaaatccca gatactgcgc tgccacgtat gattcctttc ccttaaattt atgtaatgtt
      121 gctcctccgg ttcctacggt aatgtataaa ggggcgactg gatcttcata ggttttagga
      181 ttgttgtctg ttacaattgg acttgaagac tccacttgat tataattgat aggataagtt
      241 ctttgataat tatgattgtg agcttgtaat acaatgtcaa cttgatactt ttcaaaaaga
      301 ggatggtata ttgctctaat gtccgaattt ccgggatgtt tcgtgggtgt actatattgt
      361 ggtctataag agaatacaat aatccatttt atgtctggag tttttgaaac tacttcaagg
      421 tcattcttta tgaaattata ctgagatgat ttcatatcaa aaggtatttc cgtggctaag
      481 gcaatgaagt gaacattttc ataattgaat gaataatatt cttgactcaa gttgaaataa
      541 ctctggtatt gttttaagag agagtcggac tcataatcat gatcacctaa cactattttc
      601 atcttacttt caataggaga gacaatgtca agccagcaat cagcattgct tctttgatag
      661 gatagatctc ctaaggcgag gataagcttc ggcgttttat tatttatatg gttaatgact
      721 ttttgtgtca tagaactaca acccatatct cctacaacag caaaattaaa tccgggctga
      781 attcgttctg catcaaatgg agatgacatt ggggacgccg catacgacgg attaaattga
      841 aaatatattg tacagttaac tatcaaaaat gcaactaata tggaatacac tttcttcaaa
      901 aaattacagc ctgcttaact tttgttgtaa agaggaactc cgaggggcgt tctgacggaa
      961 tttttctacc tggagttgag tttttttctc cgatacggat tttaatcgat ggtgtactag
     1021 cgagtacaat tagtacgact aacgtcaaat tggtttgtac tctcaagaat aaaagttaat
     1081 tgcagagatt aataagaaaa ttggtacaag tatatcagca agttgacaaa aagcacgaaa
     1141 agatgttgct tctcacctac acacttgtac tagtgtgtaa gtgaataagc aagccaaaac
     1201 catgaatcaa aagaaaaaat ttgcacgatt catgatgctc atcgcaattt caaaacgttg
     1261 taaatctaat cattggttca tacgatcctc cacacatcat tgggcggctg atagaaatct
     1321 gtcaaaaata tcagatttat tcagctgtta attttgtccc gctattccaa tacgatgcca
     1381 aaatctcgcg aatttcgcac tgctggcaaa atacagaata tttggggaga actgaaatgt
     1441 atccaattga tggaatgacg catcaattaa aacggtattt tccgtattta atcccaaagc
     1501 gttagtcttc aaccttctta gtattccata tgatataacc atacacggag acaagatagc
     1561 gttgggcggt agggtgactc gaactcaact gtattagatt gtcctacata ttgttatcat
     1621 attaaaccag tatctcctgt agattttgcc attcctctcg gagtttcaac ttcaatttgg
     1681 attcaaatcg ctttgccatt tgtcgtgaag gaacctacag atatgagaac tcaagttcag
     1741 ggatagtaag caatcaattt aatcttacat ctcaaaaaaa atgaaaggtt tattgtatat
     1801 ctgtatttta cccacctatt tttccatcgc tcgccagttt taatattggt ccaaatgtct
     1861 tgccgccatc actacttatt ctaattacag gttcatttgt ggtctgacta cgttcccacc
     1921 aagtaactgc gacctttcct tcatctgccg atatttctac gtcagttgaa tcagaattag
     1981 gagtattact tagattaatc tt
//
LOCUS       DASSIK010000265         4473 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1241219, whole genome shotgun sequence.
ACCESSION   DASSIK010000265 DASSIK010000000
VERSION     DASSIK010000265.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4473)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4473)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4473
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1241219"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1495)
                     /locus_tag="VFI64_05005"
     CDS             complement(<1..1495)
                     /locus_tag="VFI64_05005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HET7242681.1"
                     /translation="MELIQISNMTSSNKLSTQKTTIRHTQSICPDCNMILDAEVFERD
                     GKVFMTKTCPTHGECEELYFGSYKMYNKFSTYWMDGKGAHAPNVMVDKCACPTNCGLC
                     TNHLSHSGLANIIITNRCDLTCWYCFFYVKKGLEGAYLYEPNHEQVRAMMKTLKAQKP
                     IAGNSIQITGGEPMLRDDLYDLIKIMKEEGVDHIQLNTNGIKLALSPETMRQVREAGI
                     NNLYLSFDGVTPRTNPKNHWEVPSTLESARKCGMTVVFVPTVIKSINDHELGGIIRYA
                     QRNLDVVHAVNFQPVSLTGRMTKKEREKYRITIPDCIERIEEQSNGEISSDAWFPVPS
                     CMPMTNVIEAFSKKPKYELSIHFACGAGTYVFEDVDTKKLVPLTSFVDLKGVLEYFEE
                     KTDEIRSGANRYWAILEVVRKLNQFVDREKQPHGLNLAKMFSSILLKRSFDSVGSWHI
                     RSLFLGMMHFQDKYNEDLERLQRCDIHYLTPDLRIIPFCAFNVIPEWY"
     gene            1678..2460
                     /locus_tag="VFI64_05010"
     CDS             1678..2460
                     /locus_tag="VFI64_05010"
                     /inference="COORDINATES: protein motif:HMM:NF022932.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HET7242682.1"
                     /translation="MDLSDKSRKAMEDLGLTSYEIKVYLALLESGSMNASEMSKKSSV
                     PYSKIYDVLNSLEEKGWIESNSSRPQKFFPKSPHTAIETTKMLIEGRLKASETLVIAE
                     LTPLYEKTGIKERPEIWVVRGLYNIATKVMEIIETCQKELLIALPQISDNIARTMQPS
                     LRVLSEKGVKITVLASGKTNSDTVRAISRIADVRVKDSMFGGGVIGDTSQVIILLGEA
                     KSGQGNLEPIAIWADHIGLAKFAKDYFQYLWHDATLPNSFQE"
     gene            2817..3314
                     /locus_tag="VFI64_05015"
     CDS             2817..3314
                     /locus_tag="VFI64_05015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242683.1"
                     /translation="MINGAILLIMRLVRIEATCSLEGFRKYIIFSTCKSFIPESYLQD
                     FEVFPEREEGPGAIYIEAADKVTLKKMREITFVNAKEILGIIYSSKSGNTQLRWRQTR
                     RKTGKVSGNASPNALVNLVESGVITLEWTEEYLKSAQVKKNETTSSDGAGSKKVESAG
                     QELPE"
     gene            3404..>4473
                     /locus_tag="VFI64_05020"
     CDS             3404..>4473
                     /locus_tag="VFI64_05020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242684.1"
                     /translation="MIIREAKGSSGKAQIIIPQDPDDLFTLRRIIDIEDTLIADTTRV
                     IKQVKEYSRPDKGERIRVRILIKVQTVSFDGSVGRLRVGGVIINTDNELVPKGQHHSV
                     AISVGDMVTLDKNRLWKESELEIVNKSVENSTFILVAIDTQEAAVALVTGTHLKILPN
                     IYSGQSGKRYSGSKKLNPNIETFFGEVVAAVQTILTSNITNQNVIMFGPGETKRRFHN
                     FFSNQMENSGSNKVRTKIIEGIDVAGEDGIHVSLRSDSLREVMKDTKLGTVSTVLDQV
                     FYLVSKGEPKFAIGMKEVNQASKLKAIQYLLYSDTVFQNATEEEIVLLLNTTEALGAK
                     AYGMDSSTDIGLRISSLGGIVAL"
BASE COUNT         1379 a          843 c          946 g         1305 t
ORIGIN      
        1 tgtaccactc aggaataaca ttgaacgcgc agaatggaat aatccttaga tctggagtga
       61 gatagtgtat atcacacctc tgcaatcttt ccaaatcttc gttgtacttg tcttggaagt
      121 gcatcatccc taagaacagg gatcttatat gccaggatcc gacagaatca aagcttcgtt
      181 tcagcaaaat actcgagaac atttttgcca aattaagacc atgcggttgc ttttctctgt
      241 caacaaattg attcaacttt cgcacaactt ccaatatggc ccagtaacgg tttgcgcctg
      301 acctgatttc atctgttttt tcttcgaaat attccaatac tcctttaaga tccacgaatg
      361 aggttagagg gactagtttt tttgtatcga catcttcaaa gacatatgtt ccggcaccac
      421 aagcgaaatg gatagaaagt tcgtatttcg gtttcttact aaacgcttca atgacattgg
      481 tcataggcat gcatgaaggt actgggaacc acgcatcgct agaaatttct ccatttgact
      541 gttcttcaat tctctctata cagtcaggaa tggttattct atatttttct cgttcctttt
      601 tagtcattct tcctgtcaat gaaactggct ggaagttaac ggcgtgaacc acatccaagt
      661 tcctttgagc atatcgaata attccaccta gctcgtgatc attaattgac tttattacag
      721 tagggacgaa taccacagtc ataccgcatt ttcgggcaga ctctaaagta gagggaactt
      781 cccaatgatt cttggggtta gttcttggtg ttacaccgtc gaatgataaa tatagattat
      841 ttataccagc ctctcttacc tgtcgcatag tttctggtga taatgccaat tttatgccgt
      901 tagtgttaag ttggatatga tctactcctt cttccttcat aattttgata agatcgtaga
      961 ggtcatctct taacatcggc tccccaccag taatctgtat cgagttaccc gcaatgggtt
     1021 tttgtgcttt gagagtcttc atcatggccc ttacctgttc atgattaggt tcgtacagat
     1081 aagcaccttc caagcccttc tttacgtaaa agaaacagta ccaacatgtg agatcacatc
     1141 tgttagttat aatgatgtta gcaagtcctg agtgagataa gtgattggta cacagtccac
     1201 agttagttgg acaagcacac ttgtcgacca ttacatttgg tgcatgtgca cctttgccgt
     1261 ccatccagta tgtgctgaat ttgttataca tcttgtaaga tccaaagtat agttcctcac
     1321 attcaccgtg tgttggacat gtctttgtca tgaagacttt gccatctctt tcaaagacct
     1381 cagcatccaa gatcatgtta caatcaggac agatactttg agtatgacgt atagttgtct
     1441 tttgtgtact taatttgtta ctgctcgtca tatttgatat ttgaattaat tccattgaat
     1501 tctacctacc cttaccttta cagtgggagc tctgtcgatt tcatatttaa atatactgtt
     1561 aggaataata aggtgaatag gtttatttca tcaattattg atgttttatt agtagttcat
     1621 caaattagtg gataaataag tatattatcg tgtttccggc actgtctacc gagcctgatg
     1681 gaccttagcg acaaatcaag aaaagcgatg gaagacctgg gtctaacaag ttatgagatc
     1741 aaagtgtact tggcgctatt ggagtctggt tcgatgaatg catcggaaat gagtaaaaaa
     1801 tcttctgttc catattctaa aatttatgat gtcctgaatt cgctggaaga aaaaggatgg
     1861 attgagtcaa atagctcaag accgcagaaa ttctttccta aatcgcccca tacggccata
     1921 gaaacaacaa agatgctaat agagggtcga ctgaaagcaa gcgagactct agtaatcgca
     1981 gaacttacgc ctctttacga gaaaacaggt ataaaagaaa gacccgaaat atgggttgtc
     2041 agagggttgt ataatatagc aaccaaagtg atggaaataa tcgaaacttg tcagaaggag
     2101 ctgttaatag cacttcccca aatatcagac aacatagcac gaacgatgca gccctcatta
     2161 agagtgttat cggaaaaagg agtcaagatc acagttttgg catcagggaa gacaaactcg
     2221 gacactgtgc gggcaatttc gaggatagcc gatgttaggg taaaggatag catgtttggc
     2281 ggaggagtca taggggatac tagtcaggtt ataattctct tgggtgaggc caaaagcgga
     2341 cagggtaatc ttgagcccat tgccatatgg gcagatcata ttggcctcgc taaatttgca
     2401 aaagactatt ttcagtatct ctggcatgat gccactcttc ccaacagttt tcaggaataa
     2461 ttgcaaatat tctttccaaa cacagagttt taggtttcga atagttatga cctatcttat
     2521 ctttactggg aaatgagtat gaaagtactg acatatccct ggctatgacg tcgtttttat
     2581 tccagcttat aggtcactag tagtggacaa acgatgacga aagtagccct actgacaaaa
     2641 aatgaattag atcttgagtt tggagtttgt ccaccggata ctaaactaaa gtaagaacct
     2701 agaatttgaa gaatattttc atggcctccc tctggtattt tcctgttttg ttatcttctt
     2761 tcaacgcaat atcgccatat ctagatttac agcagtagta cctatatgtc agaaccttga
     2821 taaatggcgc aatacttctc ataatgagat tggttcggat agaagcgacc tgttctcttg
     2881 agggatttag gaaatatatc atatttagta cttgcaaatc atttatacca gaatcatatc
     2941 tgcaagattt tgaagtattc cccgaacgcg aagaaggacc cggagctatt tatatcgaag
     3001 cggctgacaa ggttaccctt aaaaaaatgc gcgaaataac attcgttaat gctaaagaga
     3061 ttcttggaat catttactca tctaagagcg gcaacacaca attgagatgg cgacaaacta
     3121 gaagaaaaac gggaaaagtg agcggaaacg catcaccaaa cgcgctagtt aatcttgtag
     3181 aatccggtgt aattacactg gagtggacag aggagtattt gaaatcagcc caggttaaaa
     3241 aaaatgagac aacgagttcg gatggagctg gtagtaagaa ggttgagtca gctggacaag
     3301 aattacccga atgaggcaat tttgatttaa gcggtgaacg agtaaatgat gagacggagt
     3361 gaatattcta atccaatctc ctattgatta ttgaagaatt tctatgatta ttagagaggc
     3421 caaaggttct tcaggtaaag cccagataat tattcctcaa gaccctgatg atcttttcac
     3481 gcttagaaga ataattgaca ttgaagatac gttaattgct gataccactc gggttattaa
     3541 gcaagtcaag gaatattcaa gacccgacaa aggagaacga atcagagtta gaattttgat
     3601 aaaagttcag actgttagtt ttgatggttc cgttggcaga ttacgagtcg gaggcgtcat
     3661 aataaacacg gataatgaac tagtgcccaa aggacagcat cattctgtag caatatcagt
     3721 aggggacatg gtaacgctcg ataagaacag gctctggaag gaatccgaac tcgagatagt
     3781 caataagtca gtcgaaaatt caactttcat tctagttgcg attgacacac aagaggcagc
     3841 tgtggcctta gtgacaggaa cccatctgaa gattttgcca aatatatatt ccggtcagag
     3901 tggcaagaga tatagtggct caaaaaagct caatccaaac atcgaaacat tctttggaga
     3961 agttgtggcc gccgtccaaa ccattttgac aagtaatata acaaatcaga atgtgatcat
     4021 gtttggccca ggagagacga aacggagatt tcataatttt ttctctaatc agatggagaa
     4081 tagtggtagc aacaaagtac gaactaaaat tatagagggg atcgatgttg caggggagga
     4141 tggcattcat gtctcacttc gatccgattc tttaagggaa gtaatgaagg ataccaaact
     4201 tggtaccgtt tccactgtcc tcgatcaagt attttatctt gtgagtaagg gagaaccaaa
     4261 atttgcaata gggatgaagg aggtaaatca agcaagcaag ctgaaagcaa tacaatatct
     4321 tttgtactcg gacacagttt ttcagaatgc taccgaggag gagattgtac ttctattgaa
     4381 cacgacagag gcattgggag cgaaagctta tggaatggac tcctccactg atattggcct
     4441 caggatatct tctcttgggg gaattgttgc cct
//
LOCUS       DASSIK010000266         2297 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_644187, whole genome shotgun sequence.
ACCESSION   DASSIK010000266 DASSIK010000000
VERSION     DASSIK010000266.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2297)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2297)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2297
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_644187"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(451..1137)
                     /locus_tag="VFI64_05025"
     CDS             complement(451..1137)
                     /locus_tag="VFI64_05025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242685.1"
                     /translation="MNMTIFEKKGFFVLLISFGIGFLVSLFAEDEYLPLVLAQGTHIP
                     DCNCTADYIATNPDNLTTMTIPRINIVKTEILDSQTEGHLAWKAVKSTVLMNVITDNF
                     LLGNFSTGTGSTVALNTINVKPNESLGIQLNGKIPESARAEIIRASVNENGTMKDVKP
                     AEKIHDYELQYDKATKKLISGGNDLAVNLHEPGYYLVVISLSFGSHHGNNINKTGGLT
                     SVYETILKLD"
     gene            complement(1207..>2297)
                     /locus_tag="VFI64_05030"
     CDS             complement(1207..>2297)
                     /locus_tag="VFI64_05030"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HET7242686.1"
                     /translation="DFPTTIAFLGNNDILVLEKSKGTVTRITNGIISPEPLLRVNVAS
                     QVERGMLGIAVSKNDNSSTYVFLYFTEVTNSTKNDNKGVLSNRVYRYELVDDKLVNPK
                     LLLDLPATPGPRHNGGAITIGNDSNLYVPIGDVDGHTTEVQNIADGGPPDGTGGIIRI
                     TQDGLPAPSIIGDSGPAKKYYAYGIRNSFGLDFDPLSGELWDTENGAGFSDEINLVEP
                     GFNSGWLKIQGKAPPDFDYSQLVNFDGKGKYRDPELTWVDTVGPTKIKFLTSDKLGKE
                     YENDMFVSDVHHGRIYHFDLNEHRDGLILSGTLADKVVDTDAETNEIIFGSNFGGISD
                     MAVGPDGYLYVASLARGNIYRVVPAGDQ"
BASE COUNT          664 a          500 c          408 g          725 t
ORIGIN      
        1 aaatcgaagc tgaaaaggag gaaattaagg aagaaactca cgaattggaa gattttgaac
       61 aagaagagtc agaagaacag gaagtcgaga atgacgagaa agacgctcaa gataattgaa
      121 cgatatttgg cgattacggt gtcgaatcag tagttatcat caacttcact atcgaccatt
      181 aaagctcact cttgtaattg attcatgaaa aaaggtcgac actcaggatt ttgggcttat
      241 tcaattatcg aattcaggga gaggaatcaa attcttttac cccctcaagg ctcataatta
      301 tcctaaataa ctccctatgc catcatcaag caaaaaaaca ttcttgtgtg tcttcaatgc
      361 ggttgtgttt tttttctata caactagttg agcttgaagt agaggtctag gtaaacataa
      421 aaagttggtt gcaaatcaca ggttattatc ttaatctagc ttcaatattg tctcatacac
      481 actagtcagt ccacccgttt tattgatatt gttaccatgg tgactaccaa aggacaatga
      541 tattactaca agatagtatc ctggttcatg taagttgact gccaaatcgt ttcctcccga
      601 aatgagtttc tttgtcgcct tgtcatattg gagttcgtaa tcatgaatct tttctgcagg
      661 tttcacatcc ttcattgtgc cgttttcatt tacagatgcc ctgatgatct cggctcttgc
      721 ggattcagga atttttccat ttaattgaat tccaagagat tcattaggtt tgacgttgat
      781 tgtattcagt gctacagtac tacctgtccc cgttgaaaaa ttcccaagaa gaaaattatc
      841 agtaatgaca ttcatcaata cggttgattt aactgccttc catgctagat gcccttccgt
      901 ttgactgtct aatatctcgg ttttaacgat gttgatccga ggtattgtca ttgtagtaag
      961 attgtcaggg ttagttgcga tataatctgc tgtacagtta caatctggaa tatgtgtccc
     1021 ttgagccaaa acaagtggca agtattcatc ttctgcgaag agggagacta agaatccgat
     1081 tccaaatgag atcaacagta caaaaaatcc tttcttttca aatatagtca tattcatttt
     1141 tatcatcttc acaacacatc ataatatgaa ttcatatctt gtaaaataac ctaactcgag
     1201 ccatttttat tgatctcctg ccggaaccac cctgtatata ttcccccgcg ctagcgaagc
     1261 tacatatagg tatccatcag gtccaacggc catatccgag attccaccaa aatttgatcc
     1321 aaatatgatt tcatttgttt ctgcatcggt atccacgacc ttgtctgcaa gtgttcctga
     1381 caaaattagt ccgtctctgt gctcattcaa gtcaaaatga tagatccttc catggtgaac
     1441 atcagataca aacatatcat tctcgtattc cttacccaac ttgtctgatg ttaaaaactt
     1501 tatttttgta ggtccaactg tatccaccca ggtcaattct ggatccctgt actttccctt
     1561 tccgtcaaaa ttgactagct gagaataatc aaaatccggc ggcgcctttc cctggatttt
     1621 taaccaaccg ctattaaagc caggttcaac aagattaatc tcatcgctaa atcctgcgcc
     1681 gttttccgta tcccacaact cgccgcttaa aggatcaaaa tccaatccaa agctatttcg
     1741 gattccgtac gcataatatt tttttgcagg tccactgtca cctatgatac tcggagctgg
     1801 tagcccatct tgagtaatcc gaataatgcc cccggtccca tccggaggac ctccatcagc
     1861 aatgttctgt acctcagtcg tatggccatc aacatctcca ataggaacat agaggttact
     1921 gtcattccct attgttatgg cgcctccatt atgcctagga ccaggtgtgg ccggcagatc
     1981 cagcaatagc ttgggattta ccaacttatc gtctactaat tcatatctat ataccctatt
     2041 tgagagcact cccttattgt cgtttttcgt agaatttgtc acttctgtga aataaagaaa
     2101 gacataggtt gaagaattgt cattttttga aacagctatc ccaagcatac ctctttcaac
     2161 ttgtgatgcg acattgaccc taagaagagg ttctggagag attatgccat tggtgattct
     2221 cgttactgtc ccttttgatt tttcaagcac caaaatgtcg ttatttccca gaaatgcaat
     2281 tgttgttgga aagtcaa
//
LOCUS       DASSIK010000267         5545 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1355782, whole genome shotgun sequence.
ACCESSION   DASSIK010000267 DASSIK010000000
VERSION     DASSIK010000267.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5545)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5545)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5545
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1355782"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1629
                     /gene="ureC"
                     /locus_tag="VFI64_05035"
     CDS             <1..1629
                     /gene="ureC"
                     /locus_tag="VFI64_05035"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018041073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009039 - urease activity [Evidence IEA];
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0019627 - urea metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit alpha"
                     /protein_id="HET7242687.1"
                     /translation="IEIEQDLLTHGDELVFGGGKSIRDGMGQATGVSSSRSLDLVITN
                     AIVMDPLIGILKADIGVKDGLIAGVGKAGNPNVMDGVYSNMIVSSNTEVVSGEHTICT
                     PGTIDTHIHFISPQQAIEAICSGTTTMIGGGTGPSEGTKATTCTPGPWNIHRMLESLE
                     ELPLNFGLLGKGNDSLQSSLIEQIEAGVCGLKLHEDWGSTPATIDAALKVADKSDTQV
                     AIHTDTLNECGYVDDTIEAIAGRTIHTYHTEGAGGGHAPDIMKIAGEKNVLPSSTNPT
                     RPFTINTLDEHLDMMMVCHHLNPAISEDVAFAESRIRAETIAAEDVLHDIGALSMYSS
                     DSQAMGRVGEVTTRAWQTADKMKKMSGRLKEESNDNDNLRVKRYLAKLTINPAITHGI
                     AEYVGSLQPKKIADIVIWTPQFFGIKPKLIIKGGFIAYSLMGDPNASIPTPEPVYYRP
                     MFGAMGLAKYSTSVTFTSKLAIKNDLKKKLGLKKKLLPVNNCRNISKKDMVYNNLTPK
                     IEIDPETYVVKVDGKIATTEPANKLSLSRLYNLF"
     gene            1683..1937
                     /locus_tag="VFI64_05040"
     CDS             1683..1937
                     /locus_tag="VFI64_05040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242688.1"
                     /translation="MNPVHTENEIENSAKKAIEVMYGSSIENFKIRVLLPYPTEQKRE
                     AWDVQVTFHLNGLQYTVDLLINEKDGQITNARLIDTMVPL"
     gene            complement(2108..3034)
                     /locus_tag="VFI64_05045"
     CDS             complement(2108..3034)
                     /locus_tag="VFI64_05045"
                     /inference="COORDINATES: protein motif:HMM:NF013899.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreD"
                     /protein_id="HET7242689.1"
                     /translation="MKEPSINKPTDLPPEFLAYKSDLEECSIESGKKGILQLELEEDV
                     RTKKTVIKEHYAKVPLFIQRALYLEESIPSMAYIYVISPSGGILQGDRYRIVIKLSNN
                     AHAHITTQGATRIYKMEKDYATQMIDIIVEEGCYCEYIPDQIIPYANSRFYQLTNLKV
                     HENATMIYSEILVPGRVASGEKFEYDICYTKTVATNHAAKLRFIDVLKLMPKKDNFKA
                     RGIMENFSILGNVYILAKVDHAKFLKEEINSIVKNIRKIQGGASILPDKHGVAVRLLG
                     NTTEHVKDVVSEILNASRRTILGGSFSKMRKS"
     gene            complement(3046..3702)
                     /gene="ureG"
                     /locus_tag="VFI64_05050"
     CDS             complement(3046..3702)
                     /gene="ureG"
                     /locus_tag="VFI64_05050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016530 - metallochaperone activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0019627 - urea metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreG"
                     /protein_id="HET7242690.1"
                     /translation="MSPRRVPRIGIGGPVGCGKTMLIEQVVPLLSLDGYKVGIISNDV
                     ISKEDAERMRKNLATEKGLMSEDLVIGVATGGCPHTAIREDPSMNISIVEEMESKHDY
                     LDLIFIESGGDNITTTFSPALADYFIYIIDVSAGDKYPRKRGLGIETCDLLVINKIDL
                     APHVGASLKVMERDAKRIRGDKPFIFVNSRTGKGTKEVASYIVKDVLFESPPWTSNKN
                     "
     gene            complement(3720..4427)
                     /locus_tag="VFI64_05055"
     CDS             complement(3720..4427)
                     /locus_tag="VFI64_05055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018050707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory UreF family protein"
                     /protein_id="HET7242691.1"
                     /translation="MNMDNEISLEDLSFLQLSDSFFPTGLYTTSNGLEVLFYEGKLKK
                     PKHLQDLIKTFLFQQIGPTDCTALGNVYDCIYSSDLAEILRTDQMIYSMKLIEEVREA
                     SVRSGIQLLRCVNSFVLGNAILEHYQRLVKNGEASGVYPVSFAVACNSLSITKYRAGL
                     MLLYGFTITVVAAAIRLGILQHLEGQKVIHNLKPSILSSVHSNIQKPLSSMWQFAPII
                     DITQIKHEQMDSKMFIT"
     gene            complement(4424..4924)
                     /locus_tag="VFI64_05060"
     CDS             complement(4424..4924)
                     /locus_tag="VFI64_05060"
                     /inference="COORDINATES: protein motif:HMM:NF014829.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242692.1"
                     /translation="MIKLDKIIGNIKLDHNLKSMHEELIKLGKTETVTFGRMESERTR
                     IRKMSNKGTDLVLILSEGSRIRDGDVLFLTQEKMIVIQIVPEPVAIIQIHKILIRDQM
                     IRTSVTIGHALGNLHRPLKIEGDTITFPIQDPSELTLIEKLLSPLKEHIEVRSDNMVF
                     EANMGS"
     gene            5322..>5545
                     /locus_tag="VFI64_05065"
     CDS             5322..>5545
                     /locus_tag="VFI64_05065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242693.1"
                     /translation="MLKRQYVYYASIAVIGITLLFYFVNQERNKVPYALGVDAIKDTT
                     DIAGTYYRIRVTNIGTNMVTNISVYLGQND"
BASE COUNT         1675 a         1084 c         1034 g         1752 t
ORIGIN      
        1 atagagatcg agcaagatct gttaacccat ggcgatgaac ttgttttcgg tggaggaaaa
       61 agcataaggg atggaatggg ccaagcaact ggtgtatcca gctcgcgttc gttggacctt
      121 gttataacga acgcaatagt gatggaccca ctgattggta ttcttaaagc cgacatcggc
      181 gtcaaagatg ggttaatagc aggagtcggc aaggctggaa atccaaacgt aatggatgga
      241 gtatacagca acatgatagt ctcctcaaat actgaagttg tttcaggaga gcatactatt
      301 tgtaccccag ggacgattga tacccacata cactttattt cacctcagca ggccatagaa
      361 gcaatttgta gtggtaccac gacaatgata ggtggaggaa caggtccctc tgaaggtacc
      421 aaagctacta cttgtacccc aggtccatgg aatatccacc gaatgttaga atccttggag
      481 gaacttcctc taaactttgg attgttagga aaggggaatg attccctgca atcttcgtta
      541 atagaacaaa tcgaagcagg agtatgtggc ttgaaactcc atgaagattg gggttctact
      601 cctgcaacaa tcgatgcagc tctcaaagtt gctgataaat ctgacactca ggtggctatt
      661 cacactgata cgctaaacga atgtggttat gtagacgata cgatcgaagc aatagcgggc
      721 agaactattc atacttatca tacagaaggt gcaggaggag gacatgctcc agatataatg
      781 aaaatcgctg gcgagaagaa cgtattgcct tcatccacaa acccaacaag gccattcact
      841 atcaatacgc ttgatgagca tcttgatatg atgatggtat gtcatcattt gaaccctgcc
      901 atttcagaag atgttgcatt tgctgaatca agaatacggg ctgaaacaat cgctgccgag
      961 gatgttttgc atgacatagg agctttgagt atgtattctt ctgatagcca agcgatggga
     1021 agagtaggag aggtaacaac tagggcctgg cagacagcgg acaagatgaa aaaaatgtca
     1081 ggaaggctga aagaagagag taatgataat gacaatttac gtgtcaaaag gtatttggct
     1141 aaacttacca ttaatcctgc aataacccat ggaattgcag agtatgttgg ctcacttcaa
     1201 cccaaaaaga tagctgacat agttatatgg accccacaat tttttggaat aaaacccaag
     1261 ctcataatta agggcggttt tattgcgtat tctctcatgg gagatccaaa tgcgtccatt
     1321 cctactccag aacctgtgta ttatcggcca atgtttgggg caatgggact agctaagtat
     1381 tctacttcgg taacattcac ttcaaagctc gctataaaaa atgacctaaa aaagaaactt
     1441 gggttgaaga aaaagcttct gcctgtaaat aattgtcgta atatatccaa gaaggatatg
     1501 gtgtacaata acttgactcc aaagatcgaa attgatcctg aaacttacgt agttaaagta
     1561 gacggtaaga tcgctactac agagcctgcg aataaattat ccttgtcaag actatacaac
     1621 ctattctagt tcgactgtcg aattataata atgcttaaat atttagtaaa tgtatttgct
     1681 gtatgaatcc cgtccataca gagaacgaaa ttgaaaattc tgccaagaaa gcgatagagg
     1741 ttatgtatgg tagtagtatc gaaaatttta agataagagt tttgctacct tacccgacgg
     1801 aacagaaaag ggaagcttgg gatgttcaag ttacattcca ccttaacggt ctccaataca
     1861 cggttgacct tctaattaac gaaaaggatg gacaaataac gaacgctcga ctaatagata
     1921 cgatggtccc gctataattt caattgtttt tgtaacagtg ctgaaatgtt cctacagttt
     1981 aatatggtct agtgtttttt acattcttga gcttccacga taaataggtg atcgtaaaaa
     2041 tcatcccaag acttgatttt ttaaaatcct ttaacaacaa tcatcgtaac tccatataag
     2101 aacatcatta cgattttctc attttactga atgagcctcc tagaattgtt ctgcgcgaag
     2161 cattaagtat ttcagaaacg acatctttta catgctctgt cgtatttcct aaaagtctta
     2221 cagctacccc gtgtttgtct ggaagaattg aagccccccc ttgaattttt ctgatattct
     2281 ttacaataga attgatctcc tctttaagaa atttagcgtg atccacttta gcaaggatat
     2341 atacattgcc caaaatgcta aaattttcca tgatgccacg ggctttgaaa ttatcttttt
     2401 tgggcatcag cttaaggaca tcaatgaatc tcaacttggc agcatgattg gttgccactg
     2461 tcttagtata gcagatatcg tactcgaact tttcaccact tgcaactctt cctggaacta
     2521 aaatttctga ataaatcatt gtagcatttt catgaacttt caaattagtt agttgataga
     2581 accttgaatt agcataagga ataatttgat cgggaatgta ttcacaataa catccctcct
     2641 caacaataat atcgatcatt tgtgttgcat aatccttctc cattttgtat atccttgttg
     2701 caccttgtgt agtaatatga gcgtgagcat tgttactaag tttaataaca attctatatc
     2761 gatccccctg taaaatgcca ccagatggag aaatcacgta aatgtatgcc atagatggaa
     2821 tgctctcttc taaatacaag gctctctgga taaatagtgg aacttttgcg taatgttcct
     2881 tgatcacagt cttttttgtt ctaacgtctt cttctaattc taattgcaaa ataccttttt
     2941 ttcctgattc aattgaacac tcttcaaggt cagatttata cgcaagaaac tctggtggaa
     3001 ggtctgttgg tttattaata ctaggctctt tcaatgaatt gcatcctagt ttttatttga
     3061 agtccatggt ggagattcaa agagaacgtc cttgacaatg tacgatgcaa cttcctttgt
     3121 tcccttacca gtccttgagt ttacaaaaat aaatggtttg tcacctctga tccgcttggc
     3181 atctctttcc ataactttaa ggctagcacc gacatgcgga gctagatcaa ttttgtttat
     3241 aacaagaaga tcacaagttt cgatgcccaa gcctctcttg cgtggatatt tatctcctgc
     3301 agatacgtct ataatgtata taaaataatc cgctaaagca ggactgaatg tcgtagtaat
     3361 gttatcgcca ccactctcaa taaaaatcag atcaagataa tcatgctttg attccatttc
     3421 ctcaactatg gagatattca ttgaaggatc ttctcgaatg gcagtgtgtg gacatccacc
     3481 tgtcgcaact ccaattacaa gatcttctga cattagaccc ttttccgtcg caagattctt
     3541 cctcatccgt tcagcatctt cttttgagat aacatcgttt gaaataattc ctaccttata
     3601 accgtcaagt gatagcaatg gaacgacctg ctcgatcaac atggtcttgc cacatccgac
     3661 tggcccgcct atcccgatcc ttgggactct tctaggcgac atagaaaagg cactcttttt
     3721 catgtaataa acattttcga atccatttgt tcatgtttta tttgtgtaat gtctataatt
     3781 ggtgcaaatt gccacatgct tgaaagtggt ttttgtatat tactgtgcac agaagataat
     3841 atagatggtt tcaaattatg gataaccttc tgcccttcta agtgctgtaa tatacccaat
     3901 ctaatagcag ctgctactac ggttattgtg aagccatata acaacattaa gcctgcccta
     3961 tatttggtga tactcaatga attacaggct actgcaaatg atactggata aactcctgaa
     4021 gcttctccgt tctttaccaa tctttggtag tgctctaaga ttgcattacc tagtacaaat
     4081 gaatttacgc atcgtagaag ctgtatacct gatcttacag aggcttctct cacttcttca
     4141 ataagtttca tagagtatat catttgatct gtcctcagga tttctgccag atctgaactg
     4201 tagatgcagt catatacatt acctagtgca gtgcaatcag taggacctat ttgttggaaa
     4261 agaaaagttt ttatcagatc ttgcaaatgt tttggttttt tcagctttcc ctcataaaat
     4321 agtacttcaa gtccgtttga cgtagtgtat agacccgtcg gaaaaaaaga atctgatagt
     4381 tgcaaaaaac taagatcttc caaagaaatt tcgttgtcca tattcatgag cccatattgg
     4441 cctcaaatac catattatcg cttctaactt ctatatgttc tttcaatggt gaaagtaact
     4501 tttcaattaa tgtgagttca cttggatctt gaatgggaaa ggtgatggta tcaccttcta
     4561 tcttcaaagg acgatgaagg ttccccagcg catgtccaat tgtgacagat gtccttatca
     4621 tttggtctcg aatcaaaatc ttatgaatct gtattattgc tactggttct ggtactattt
     4681 gaatgactat cattttctcc tgcgtgagga atagaacatc tccatctcta atacgtgatc
     4741 cttcacttaa tattaatact agatctgttc ctttgttaga catttttctt attctcgtac
     4801 gctcagattc catacgtcca aaagtaacag tttctgtttt tcccaattta atcaactctt
     4861 catgcatcga tttgagatta tgatctaact tgatgttgcc aattatttta tcaagcttaa
     4921 tcattctgat tttgcatcat tttaggtttc atttgatgaa atttatcttt ttaatttccc
     4981 ttgttattcc aagtatactt acaatcatta ctgaagcctt tagactatgc ggagtcatgc
     5041 cgaagtcaga ggggttggat tgaaaacaag tgacaatgcc acgattcgca cgacccgcca
     5101 gtcatctagg aagcatagaa ttttctagtc atgcagaaag cttgcccatt agaattaggt
     5161 tctgatctgg tcaggtctgc cctagattta cttgtgacct ttatgttgtg gctagtaatt
     5221 tactaacctg cctaactaaa tttagaagat aggttcactc aaatggtttt atacccgttc
     5281 taagatcata cttattttga tcgtactcta gttgatagac tatgttgaaa agacaatatg
     5341 tttactatgc ctcaattgca gttattggta taaccttact tttttacttt gtaaaccaag
     5401 agagaaataa agttccttac gctttgggtg tggatgcaat taaagatact acagatatag
     5461 caggtaccta ctatcgaata cgagttacca atattggaac aaacatggtt acaaatattt
     5521 ctgtatactt gggtcaaaat gatat
//
LOCUS       DASSIK010000268         3333 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1448300, whole genome shotgun sequence.
ACCESSION   DASSIK010000268 DASSIK010000000
VERSION     DASSIK010000268.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3333)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3333)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3333
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1448300"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            492..818
                     /locus_tag="VFI64_05070"
     CDS             492..818
                     /locus_tag="VFI64_05070"
                     /inference="COORDINATES: protein motif:HMM:NF016798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUN14 domain-containing protein"
                     /protein_id="HET7242694.1"
                     /translation="MSIENISPTLFSIGSGGLIGFLVGFAVKRVFKILAVIAGVFFGS
                     LMYLQSQNLISVNWDRLQEMSQWTVITLAHSLTDVGQISTISGNLGIPLTGGLAAGFA
                     FGVMKG"
     gene            complement(970..2151)
                     /locus_tag="VFI64_05075"
     CDS             complement(970..2151)
                     /locus_tag="VFI64_05075"
                     /inference="COORDINATES: protein motif:HMM:NF017380.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF763 domain-containing protein"
                     /protein_id="HET7242695.1"
                     /translation="MKAHATINLPLHGGFAPPYLLKRMKKLSFAISKVIVNEYGQHEF
                     LRRLADPLWFQAFGCVLGFDWHSSGVTTVVTGVLKHSLNEDVHGVSIAGGKGKRSREA
                     KNEIPNLAEKHYNLSSAKMENLLYASRMAAKVDNSAIQDGFSLYHHVIAFDDEGNWTV
                     VQQGMNRTYRMARRYHWISDTVKGFTSEPHAGIISNFKNPNTLDMTSIDSAENQKISV
                     ELATSNVDNIKSSVRRIIVDYGTQLNDITLDKWIAGDNNFHKDIPVSDSMKKVQNSEH
                     YEMPRRLNWDVFRKIYDIQPKNYEELISIPGIGPAAVRALSLIGEIIFGTKSSWQDPV
                     KYNFAHGGKDGVPYPVARKTYDKSIGYLSSAIEGAEIERQERVQALKKLADYSARMFN
                     S"
     gene            2586..3068
                     /locus_tag="VFI64_05080"
     CDS             2586..3068
                     /locus_tag="VFI64_05080"
                     /inference="COORDINATES: protein motif:HMM:NF012355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HET7242696.1"
                     /translation="MINLFLTAIIGAVLIAGVAFSPLLAGHLHEANAQGNATTMSGNM
                     TGNATTMSGNMTGNATGASAGDSVTISPGSSVPSNGKFFVPETLTVSTGTIVTWTNGD
                     STLHTVTSGSAESGNSGTEFDSSYLAAGKTFQHQFGTAGTFDYYCTLHPWMKGKVVVG
                     "
BASE COUNT          991 a          666 c          627 g         1049 t
ORIGIN      
        1 atggattatt acaaaggcag tcatagtgta agacaactta accttcaata ttcctgatat
       61 gttcaaatca agaataacgc ctttactgcg aattcgattt tctgagtcaa tggttattta
      121 aaattgggat taacaggtcc aaatactttt tttcgtagga gttcgattct gactatgata
      181 agtacatctg actaaaccat tcaatcatat ggcgatctct gatcctcttg ttccataagg
      241 tatatcattg ctgagatact atatattttc catcttcttt tgaagtgcca aattggaatc
      301 aaatcagtaa ctacaactcc attgacgatt agctcaatct ggtatatgta tcgggcaagt
      361 ccaaacgcta atacagtaat ccccgagata aactaaatta gtagttatgt tcctttgcag
      421 agtaaaatac tagagctata aactaatgca acagataaat atatgatcaa aaatactttg
      481 agttaagcaa tttgagtatc gaaaatattt caccaacttt gttctcgatc ggctcgggtg
      541 gactaatcgg attccttgtt gggtttgcag tcaaacgcgt attcaagatc cttgctgtaa
      601 tagctggtgt attctttgga tcgctaatgt accttcaatc gcaaaatctc ataagtgtaa
      661 attgggatag actccaggaa atgtcacagt ggactgtaat aacactagct cattcattaa
      721 cggacgtggg acagatctct actataagcg ggaatttggg catacccctg acaggaggct
      781 tggctgcggg cttcgccttt ggagtcatga aaggttaaga tctgatttca tgggataacg
      841 aaaagtctaa gacttaattt tgttttgagt tacgaaaact atactgacag aaatggcact
      901 atatctgaaa tttcagttga atgtaattcc aactaatagc ttgtatagtt gtctttactg
      961 aaatctgatt taggagttaa acattcgagc tgaatagtcc gctaatttct tcagagcttg
     1021 aactctctcc tgcctttcaa tttcagctcc ttctattgca gaagaaagat aacctatgga
     1081 tttatcatat gtcttacgag ccaccggata tggtacccca tccttcccac cgtgtgcaaa
     1141 attgtatttt acagggtcct gccacgatga cttcgttcca aaaattatct ctcctataag
     1201 tgaaagcgct cttacggctg cgggaccaat tcctggaata gaaattaact cttcataatt
     1261 ttttggctga atatcataaa tttttctaaa tacgtcccag tttaatctac ggggcatctc
     1321 ataatgttca gaattctgga cttttttcat tgagtccgat acgggtatat ccttatggaa
     1381 gttgttatct cccgcaatcc acttgtccag tgtgatatca ttcaattggg tgccataatc
     1441 cactataatt ctgcggactg acgactttat attatcaacg ttgcttgttg ccaactcgac
     1501 tgagattttt tgattttctg cagaatcaat agaggtcata tccagcgtat ttgggttttt
     1561 gaagttgctt atgatgcctg cgtggggctc ggaagtaaaa cctttcacag tatctgaaat
     1621 ccaatgatat ctccttgcca ttctataagt gcgattcatt ccctgttgga ctactgtcca
     1681 gtttccttca tcgtcaaatg cgattacatg gtgatataac gaaaaaccat cctgtattgc
     1741 agaattgtcg acttttgctg ccatcctact agcgtacaat aaattttcca ttttagccga
     1801 agaaagattg tagtgttttt cagcaagatt tggtatttcg ttttttgcct ctctagatct
     1861 ctttcccttt cctcctgcaa tagaaacgcc gtgaacgtct tcattcagag aatgttttag
     1921 aactccagtt accacggttg taactcctga tgaatgccaa tcaaaaccta aaacacatcc
     1981 aaaagcttga aaccacagag gatcagccaa cctcctcaaa aattcatgtt ggccgtactc
     2041 atttacaatg acttttgaaa ttgcaaaaga taatttcttc attctcttca gtagatatgg
     2101 gggagcgaat cctccatgca acggaagatt aattgtagca tgagctttca atacagtgta
     2161 aaatagaaag caattatgaa catattaatt ttctattagg atggccgtta tttcaaatgc
     2221 cagctaatct atactttgtc agcttataca ataagaaaga gctaattatg tacttaaatg
     2281 gccttcaatt cggaggtaaa tattttaaag ctgctgctat aatgaagaga gatctagcag
     2341 aaaaataaat aaactcacgg acttttgaaa tgaatatcat gaattccaga gtgatgatac
     2401 tttggtaacg actacaaata actaaacggg gctcgagata gtcaaataat aattgggtta
     2461 gttatgtgac tgacgacttc tgaattagat agcggaatca tgtcgttttg gaaatacagt
     2521 ctatagtttc tctctatagt gggagattca aaggttttaa tatgaaatcg atgtagcact
     2581 agtccatgat taatctcttt ttgacagcta ttattggtgc tgtcctgata gcaggagtgg
     2641 cttttagtcc tcttttggca ggtcatctgc acgaggctaa tgcgcaaggt aatgcaacaa
     2701 ctatgtctgg taatatgacg ggcaacgcaa caactatgtc tggtaatatg acgggcaacg
     2761 caaccggtgc ttcagccggt gattctgtta caatttcacc tggatcctct gtcccaagca
     2821 atggaaagtt ttttgtacct gaaaccctga ccgtttcaac tggaactata gtaacatgga
     2881 caaatggcga ctcaacattg catacagtta cctccggaag tgcagaatct ggaaattccg
     2941 gaaccgaatt tgattcaagc tacctcgctg caggaaaaac attccaacac caattcggta
     3001 ccgcgggaac attcgactac tactgcactc ttcatccatg gatgaagggc aaagtcgtag
     3061 tcggctaact cttttttctt tttacatttc aaatttcagg cgacatttct aactttgctt
     3121 ctaaagacca gtcggggaga tgcaatacac tacagtctgt aatctaattt tgaaaatcaa
     3181 attctatctt tttgcaagat attgatgaac gggtacaaaa atgacctaca agcctcttcc
     3241 tgaatctgag gccaatcgcc gttcttcagt cggatacccc taaatcaagc gtcgcccgac
     3301 caaactattg gtcctaattt ggatcggaag tca
//
LOCUS       DASSIK010000269         3116 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_545424, whole genome shotgun sequence.
ACCESSION   DASSIK010000269 DASSIK010000000
VERSION     DASSIK010000269.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3116)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3116)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3116
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_545424"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            521..1066
                     /locus_tag="VFI64_05085"
     CDS             521..1066
                     /locus_tag="VFI64_05085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242697.1"
                     /translation="MRISGKFAFLVLGLLVFSIASSALTHSVNGASTQNNITETAASD
                     TNVTTNTVIQKLDSHDTNVSELQSTNSDPFKETDSISNTNLSDALKSQDKHSTDKDDS
                     KSSSSSSQQASDSSCSNDGNDNCKVDQKSVKKNNDSKNKDSTVVKEQKQKARQDLKSI
                     KDKIKSDIKNRFKLPIDIPFP"
     gene            complement(1599..2303)
                     /locus_tag="VFI64_05090"
     CDS             complement(1599..2303)
                     /locus_tag="VFI64_05090"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HET7242698.1"
                     /translation="MSEERYIAIVTGGNRGIGYEICKELARAGCKVVLTCRNDAEGRR
                     ALSKLNSGDKIVFHKLDVTDTNEIELLRKWIVATYGRLDILINNAGVYLDEGVSVFDV
                     DEKIMRGTLEVNFYGAFHMCRAFVPLMQKNRYGRIVNVSSGYGAMSEMGEKVAAYRIS
                     KVALNALTLLMAQELRDSNIKVNAVCPSWVSTEMGGTMAPVTPEAAAKDIVHFAILGE
                     SGRSGGFFRYKKPIPW"
     gene            complement(2472..2969)
                     /locus_tag="VFI64_05095"
     CDS             complement(2472..2969)
                     /locus_tag="VFI64_05095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242699.1"
                     /translation="MPLLQFYPHEQNKIIGAYASPSNSTLYFDCGNSPDKLTIEALPV
                     TPQAQYTMWLFETNIKLGNSTTAMTSGESNTLGNGEGLFNAEFTVPSKDKNMYLAALY
                     SGNNTSTPPIAEGAARCYSGTGISADTQALEQQCQAFVGKNREINDMRLTENICKPMT
                     QKNIG"
BASE COUNT          958 a          621 c          535 g         1002 t
ORIGIN      
        1 gtccatcacg taattcaatt actttaatcc tattatctcc atccaaattg ttttgtaaaa
       61 agacatctag accctgaact atgtattgaa tatttggaag cgtcaataat gtcttctttt
      121 catttgaatt aggtgcttgc tggagataca tgaagtatat gaggtagcca gttgttaagt
      181 cttatgagat agatattgat gttattccct tattccatga atttggagtt tttttgaaac
      241 taatgccttc tagtctcccc ccaagggatt aatgagccac attcattacg tgttgactat
      301 aatgtcttca aaaataccta aaaaaccctt tttccattgc aagtatggct tctatctagt
      361 cttctcatag ccgatgcata ccaatcatag aagtaacaac actaccaagg taccataagt
      421 aatttcttct cgatagtact ttgactatta tatggttgta cgttgataaa cgcaaatatg
      481 ctttaaactg gtacaagtta cgagtagcgg tagtgggagc atgcgcattt caggtaaatt
      541 tgcatttcta gtacttggct tgttagtatt tagcatagca agttctgcgt taactcattc
      601 tgtaaatggt gcaagtactc aaaataatat tactgagaca gcagcttcag atactaatgt
      661 gacaaccaat actgtaattc aaaagctaga cagccatgac acaaatgtga gcgaattaca
      721 atcaactaat tcagatccat tcaaagagac agattcgatt tcgaatacca acctttcaga
      781 tgcgttaaaa tcccaggaca aacattctac tgacaaggat gattctaaat cctcttcatc
      841 ttcttctcag caagcaagtg attcttcatg ttccaatgat gggaatgaca attgtaaggt
      901 cgatcaaaaa tctgtgaaaa agaataatga ttcaaaaaat aaagatagta cggttgtaaa
      961 ggaacaaaaa caaaaggcta ggcaagacct taaatcgatc aaggacaaaa tcaagtcgga
     1021 tataaagaat cgttttaaac ttccaattga tataccattc ccgtagatta gaaactaaat
     1081 aaagatagaa agtccaatct gactattttt aacatgtttg gataacagaa aagctgaata
     1141 caaagaagta cttagataga agacatctgc ccatagcgaa tgaatgagtc gtactgtaat
     1201 gagtatgcca gtaaatctca gtcgcactaa actatttagg tgacgtcagg taattaatga
     1261 tggatatatg ttacgtgaca tactgaggaa ccgatggaaa actattgtca ttcttgttgg
     1321 gctatggctt gttttcttat tcccaattcc aatccttcct ttctggggta tacatttaga
     1381 tgaaaatacc cttgaaacag tgatcataat cagtctcatt gtatccattc ccttcacatt
     1441 tctggcctta ttcataaata aaggggaaca taaggattct gagatagata aaagctaaag
     1501 attattatta tgagtatcag ctcgaaattc taactaatta cagttctatt ctcgcctgtt
     1561 ggattagcat tattatgtga gtacccaatg ctatcctgtt accaaggaat gggcttttta
     1621 tatctgaaaa agcctccact ccgcccactt tcacctagta tggcaaaatg cacaatatct
     1681 ttggcagcag cttcgggagt tacaggggcc atggttccac ccatttcagt gctgacccaa
     1741 ctcggacata ccgcatttac tttaatgtta ctatctctta gttcttgtgc cataagcaaa
     1801 gtaagagcat tgagtgctac cttggagatt ctatatgcgg ctactttttc tcccatctcg
     1861 ctcattgctc catatccaga tgagacattt actatcctac catatctatt tttctgcatt
     1921 aatggaacga aagctctaca catatgaaaa gcaccataga agttaacttc taatgtacct
     1981 cgcataatct tttcgtctac atcaaaaacg cttacccctt cgtccagata aactccagca
     2041 ttatttatca ggatatcgag tcttccgtaa gtagcgacaa tccacttacg aagcaattca
     2101 atctcgttag tatcagtaac atcaagttta tgaaatacaa ttttatctcc ggaatttaat
     2161 ttggataatg cacgtcgacc ttctgcgtca tttcgacatg tgagtacaac tttacagccc
     2221 gcacgagcta attccttaca tatttcatat ccaattccac gatttccccc agtaacaatc
     2281 gcaatatatc tttcctcaga catcagttac ccgtaacatt atgccagttc ttattttgtt
     2341 ttttctttgt tgagctgtac tattatattc aaaagatact cttgtgcatg gttgttatct
     2401 tgcctctgct agatatctgt ggaaaaggcg tttgctgagg gttatgggag ggagagctac
     2461 agccttctca actatccaat gttcttctga gtcataggtt tacaaatatt ttctgttaat
     2521 ctcatgtcat ttatttccct atttttacca acaaatgctt ggcattgctg ctctagagct
     2581 tgggtatctg ctgatatgcc cgttccactg tagcatctag cagcaccctc tgctattggt
     2641 ggtgtgctag tgttgttacc actataaagt gcagccagat acatattctt atcttttgaa
     2701 ggaactgtaa actcggcatt aaagagacct tcgccatttc caagcgtgtt tgattcacca
     2761 ctagtcatgg cagtcgtaga atttccaagc ttgatatttg tctcgaataa ccacatagta
     2821 tattgagctt gtggagttac tggcaatgcc tcaatggtta acttatcagg cgagttcccg
     2881 caatcaaaat aaagagtact attcgaagga ctggcatacg caccaataat tttattctgt
     2941 tcatgcggat aaaattgcag taatggcact aggacaataa ctaatacaag gactagtatt
     3001 gatgagaaac acaggctaat ttctcgacag aagattttct tgttcattgt aaaccagcat
     3061 tattttcacc tggtgattaa taaattttag atcgttccac tttctatttc ttaata
//
LOCUS       DASSIK010000270         2754 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_347857, whole genome shotgun sequence.
ACCESSION   DASSIK010000270 DASSIK010000000
VERSION     DASSIK010000270.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2754)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2754)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2754
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_347857"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            529..966
                     /locus_tag="VFI64_05100"
     CDS             529..966
                     /locus_tag="VFI64_05100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018032967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HET7242700.1"
                     /translation="MDETDVKILQQILSDARLSYRKIGEKIGVSPPTVLSRVQKLERN
                     RIIRSYTAVLDHEKLGYDLTAIIEVTAVKGKITEVEKHISIFPNVCAVYDITGLTDMI
                     IIAKFRNRKELSDFVKKDLALPYIERTNSHIVLVTVKEDFRLM"
     gene            1592..2191
                     /locus_tag="VFI64_05105"
     CDS             1592..2191
                     /locus_tag="VFI64_05105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242701.1"
                     /translation="MMIAQTTMIAACLAILIYIAVVISGSFISKDTTNQNVLDLLSKS
                     DSVRDEQIARSLSYIHKSDTGMNVQTILLNGINLSSNQFIPLFDSTPFATKGHIELNL
                     PCDSNNPRSPFFQILVGQAPNLTAVTPGYVQQISVPPDMCLYHAQFGFGDPVTDIVLK
                     NISDREISLKGPHAAVISTHESYTPTVSSFKELQHKQGY"
     gene            2498..>2754
                     /locus_tag="VFI64_05110"
     CDS             2498..>2754
                     /locus_tag="VFI64_05110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242702.1"
                     /translation="MENPKPNRYNYDCIRLVDSMLNIHAITGKLLQIDESILSVAIVD
                     MKGQTVSRKSRYHISNAFVSDNAKTDCNIWIRAAFAMVEQCA"
BASE COUNT          917 a          465 c          505 g          867 t
ORIGIN      
        1 cactataggc aagttggatt ttatcgattt caagatactc atatccataa tattcgtaat
       61 cgagtattag tacactgctg agcgtgaatg ttgattagta aacatatatt attacttcta
      121 aggtctaggc attaatgcga aagatcaata ctagattgac tatcagatcg tcttcattat
      181 gttttgacta aaccctgaat acaaatagcc gcattactaa tgatttttga agattagatc
      241 ttgggagccg cttgctaatc tggcaaagcg aaatatcaga tcaaagacag tcgcttacct
      301 atcttttttc actatcacga aaatattttt tatgactcga gggattagga tttgtatgca
      361 aagtcgaacg ataaataagc ataattcgct ctatatcttc aaattttgtt ttgttgcggg
      421 attcactgaa gttatgaaat ataatgtttt atagactaac tcttaatgtt tgaaataaag
      481 atggtcgtaa taacttttat ttgttagtta tttgttgata tcattgatat ggacgaaaca
      541 gatgtcaaga ttctccagca aatattgtca gacgcgcgat tgtcatatag gaaaataggt
      601 gaaaagattg gtgtgtcgcc acctactgta ctttcaagag tacaaaagct ggagaggaat
      661 cgtattataa gatcgtatac cgccgtccta gatcatgaaa agttgggata tgatcttacg
      721 gcaataattg aggtcacagc tgtaaaaggc aagattaccg aagtggaaaa acacatatca
      781 atatttccaa acgtgtgtgc agtgtatgac attacaggat taacggacat gataataatt
      841 gcaaaattca gaaatcgcaa agaacttagc gattttgtaa aaaaggatct cgcattaccc
      901 tatattgaaa gaaccaatag tcacattgta ttagtaacag taaaggaaga ttttaggctt
      961 atgtaaataa tgagctgcaa cccttttaat gaactcatta ttttgagaaa aagattacgt
     1021 ttacctaggc tacacttaag atcttaattg attacatacg aagtgagaga aaatccttgc
     1081 caattggtaa ataaaattat aattgagtca tacaaactta acaaatatta agtgtatgtt
     1141 aatattacta aacgaatgtt taatttccat ataaacaact ttatatataa taggcaaata
     1201 tagcaattat gtttgaaaac ataactctag tattgtatct gtgtacgggg ttcattgtga
     1261 cgtatctagg actggaaatt gcttggcact ttacggcttg tagaatccat gacaaagcga
     1321 taaaaccgtg tatgtttaag caactagaaa cactgatact tgcgcgccgc cagtaaaagg
     1381 aataagtacg ctagcaggat caaaaattta ttaatttcag ggaatatttt atattctaca
     1441 acctcgggtt acatttggcg aacaaattgt cctcaactag atactgtcat agatttattc
     1501 tgttcgtaaa taagattcat cttcccattt cagacaatca aatttattcc gccttaaact
     1561 gtaggttaag gattgcagga gtcgatgcat catgatgatt gcgcagacta ccatgattgc
     1621 cgcctgcctt gcaatactaa tctatatagc tgtagttatt agcggaagtt tcatctcaaa
     1681 agataccact aatcagaatg tactagattt actttcgaaa tctgacagcg tgagagatga
     1741 acagatagcc aggagtttga gttacattca caaatctgac acaggtatga atgtccagac
     1801 tatactcctg aatggaataa atttgagtag caatcaattc atacccttat ttgactcgac
     1861 gccgtttgca actaagggac atattgaact aaatcttcct tgtgatagta acaatccacg
     1921 atctccgttc ttccaaattc ttgttgggca agctcctaat ctcacagcag taacgcctgg
     1981 ttatgttcaa caaatatcag taccaccaga tatgtgtctt tatcatgctc agtttggatt
     2041 tggtgatcct gttactgata ttgtattgaa gaatatctcg gacagagaaa taagtctaaa
     2101 gggtcctcat gctgcagtaa tatcgactca tgagtcatat actccaacgg tttcatcttt
     2161 caaggaactt caacataagc aaggatactg ataattaaga tcagctacaa tggacttttc
     2221 tcttataaac aggtctgacc gtaacccggt catccaacga gaagaaagga agggacgtgt
     2281 ctatattcgg caagtgcctt atttttgtct aaatgtacgt gtgcctcata tggttatcat
     2341 ttattataaa gagctgctta tggctaaata tattagctaa gcttttaaat tgacagaatt
     2401 tactggatac ttctcaattt agacaaattc aaattcattt ttctcctaat aggaaactgc
     2461 ttcggtggaa gcttagaaag cactatgttc tcctaagttg gaaaatccta agcctaatcg
     2521 ttataactat gattgtatac gactagttga ctcgatgcta aatatacatg caattacagg
     2581 aaaattgctg caaatagacg aaagtatact atccgtggct attgttgata tgaaaggaca
     2641 aactgtttcc cgcaaaagta gatatcatat tagtaacgca tttgtttctg acaatgcgaa
     2701 gacagattgt aatatatgga ttagagctgc tttcgccatg gttgagcaat gtgc
//
LOCUS       DASSIK010000271         2606 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_250031, whole genome shotgun sequence.
ACCESSION   DASSIK010000271 DASSIK010000000
VERSION     DASSIK010000271.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2606)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2606
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_250031"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1074)
                     /locus_tag="VFI64_05115"
     CDS             complement(<1..1074)
                     /locus_tag="VFI64_05115"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HET7242703.1"
                     /translation="MSTRIFDKWWRGRLLVLVPLILSAYTHLWNVTGFPSVHIDEAHY
                     MRRAMLVINGMGPQESASTGYPRTYDHPYFGQLFLGGILELIGYPNMYYSGDNTHSIE
                     MLHFIPRIIMGILAVIDTFLLYGILQIRYNRTVALISAILFAVMPMTWLLRRVYLDTL
                     LMPFLLASILFALYVQKSRNENSKPMYSRRIDYRVFVLLSGIFLGLTIYTKIPAITFI
                     PLVGYVIYLNSRKVRILIIWLVPVILIPFIWPLYSVIAGQSDLWVQWVLWQTERDKPL
                     GRSLNSFFQIDPIITIGGVTGLVLAALRKDFFPLVWIAPFIAFSFLIGYVQYFHLIVI
                     FPAFCTAFGILIESVQVRIKKHLK"
     gene            1223..1798
                     /locus_tag="VFI64_05120"
     CDS             1223..1798
                     /locus_tag="VFI64_05120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242704.1"
                     /translation="MNLLSSVVIAFGLLLVTTVVVGTFDHQYDYTRRMFKQSFEELPV
                     AFSDIKNLKGTLVSLQYNGSHAPAWILTGRWKISDSDVDNKDNSSLKFTANITMVGPN
                     GIGEHKHRLINFKLLNLSFSGSSATLRGTISFTTSGTDPTGTTTPILNLPITIKIENL
                     RTMNLDIDKKLVKYHFGESPVYGAVSSTAID"
     gene            2119..>2606
                     /locus_tag="VFI64_05125"
     CDS             2119..>2606
                     /locus_tag="VFI64_05125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242705.1"
                     /translation="MIVIPSYLDIYGVTGSGATDYNNNNNNNNNNNKNENQNNTKYTI
                     GNKTLVVWQDNSTGNNEIYLRVSTDGGNAFGNTTNLSNNTGNSEFPKIDSVGKKIIIV
                     WQDNSTGNNEIYLRKSKNAGATFSSKKILSNNTGNSELPQIDTIGNKTLVVWQDNSTG
                     NN"
BASE COUNT          924 a          453 c          497 g          732 t
ORIGIN      
        1 ttttaaatgt ttttttattc ttacttgaac cgattcgatt aatattccga aagcagtgca
       61 aaaagctggg aagatcacaa ttaaatgaaa atattggaca tatcctatta gaaacgagaa
      121 tgctataaaa ggggcaatcc aaacgagggg aaaaaaatcc ttccggagag cagctaatac
      181 caatccagtc actccgccga tagttataat gggatctatt tgaaaaaaag agtttaatga
      241 acgcccaagc ggtttgtccc gttcagtttg ccatagaacc cactggaccc ataagtcgct
      301 ttgacctgct atcacactgt agaggggcca aataaaggga atcaaaatta caggaacaag
      361 ccaaattatt agaattctta cttttctcga gttgaggtaa attacatagc ccacaagtgg
      421 tatgaatgta attgccggaa tttttgtgta aattgtcaaa ccaaggaaaa ttcctgaaag
      481 tagaacaaag actctgtagt caattcttct agaatacata ggttttgaat tttcatttct
      541 agatttctgg acatacaacg caaacaatat ggaagccaaa agaaatggca tcaataacgt
      601 gtccaagtag acgcgcctca gtagccacgt cattggcata acggcaaaca aaatagcgga
      661 aatgagggca acagttctat tgtatcttat ctggagtata ccatataaca gaaaagtatc
      721 aatgactgca agaattccca ttatgattct tgggataaaa tggagcatct cgattgaatg
      781 tgtgttatcc ccagaataat acatatttgg ataaccaatc aattctaata tgccacctag
      841 aaaaagttgg ccaaaatatg gatgatcata ggtacgtgga tatccagttg atgcagattc
      901 ctgtggtccc atcccattta tgactagcat tgctcttctc atataatgag cttcatctat
      961 gtgaacagaa ggaaacccag taacattcca taaatgagta tacgctgaca gaatcaaagg
     1021 aactaacaca agtagtctac ccctccacca tttgtcgaaa atgcgagtag acatgctgta
     1081 gaatgtccat tggtcagagt gattttaagg tacgcttatc tgagtgataa ataagaaaaa
     1141 tgcacataga tcttccaagt ttccttgcag tgtagctatt ctttgggttc aacttatata
     1201 tttgactttg tctcagtcct tggtgaatct attatcatct gtcgtcattg cttttggatt
     1261 gcttcttgtg acgacagttg tcgttggcac ttttgatcat caatatgatt acaccagacg
     1321 aatgttcaag caaagttttg aagagctgcc tgtcgctttt tccgatataa aaaatttaaa
     1381 aggtactcta gttagtctac agtataatgg gtcacatgca cctgcatgga ttctgacggg
     1441 caggtggaaa attagtgatt ctgacgttga taataaagat aattcaagcc taaaatttac
     1501 tgcgaacatt acaatggttg gccctaacgg gataggtgag cacaaacatc gactgatcaa
     1561 ttttaagctc ttaaacctaa gctttagtgg cagctcagcc acattaaggg gaacgatatc
     1621 atttactaca tctggaacag atccaacagg aactactaca ccaattttga atctgccaat
     1681 aacaataaaa atagaaaacc ttcgtaccat gaatcttgat attgataaaa aacttgttaa
     1741 ataccatttt ggcgaatccc cagtatatgg tgcagtatct agcaccgcta ttgactaaca
     1801 tcagtattca agacaggact actccggcaa caagcataaa gtcaacgtaa caaattagat
     1861 cttatttgtt taatttagag ccataacaaa tgtgcgcaaa ttggactcca gtggcataac
     1921 tataataggg aagaatgcca tttttagaat aacgcgacaa gatatattaa tgatgaagat
     1981 cgatggttga aaatcaggcg ttcgaaaata caattgagct ggcaagaaat caatttatgg
     2041 aacagggtta gttttataga tttgatttgt gagggttgta taaggaatta ttcagctatt
     2101 cttatggtat ttacattttt gattgtaatt ccaagttatt tggatattta tggtgttact
     2161 ggatcagggg ccactgatta taacaataac aataacaata acaataacaa taacaaaaat
     2221 gagaatcaaa acaatacgaa gtatacaatc ggtaacaaga cactagttgt ctggcaagat
     2281 aatagtactg gaaataatga gatatattta agagtgagca cagatggtgg aaatgctttt
     2341 gggaatacaa caaatctcag taacaacacc ggaaactcag aattcccaaa gattgactca
     2401 gtcggtaaga aaataataat tgtttggcag gataatagta ccggaaataa tgaaatatat
     2461 ttgagaaaga gcaaaaatgc aggagccaca tttagcagca aaaaaattct cagtaacaac
     2521 accggaaact cagaattacc tcaaatagat acaatcggta acaagacact agttgtctgg
     2581 caagataata gtactggaaa taatga
//
LOCUS       DASSIK010000272         3038 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1059265, whole genome shotgun sequence.
ACCESSION   DASSIK010000272 DASSIK010000000
VERSION     DASSIK010000272.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3038
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1059265"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            696..1316
                     /locus_tag="VFI64_05130"
     CDS             696..1316
                     /locus_tag="VFI64_05130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242706.1"
                     /translation="MEDELHNNDKKILSLLINEDSSRFSFTGMKRKLNVHQQSLARAL
                     ARLEELGLVEKSDAGYGLNKNAEVFTSSGKIVKKPSPIFSRSSINFQLLHASIPVQIE
                     VEQILIGLHGKWFDKYRFVELKKTNNGYALKWVNEATSYELTLIIIGNYCVIETNAIS
                     GESRLEAMFGASRIIKEITAILQRKLDDFSVSTIKIDEISLTEHVN"
     gene            1431..2012
                     /locus_tag="VFI64_05135"
     CDS             1431..2012
                     /locus_tag="VFI64_05135"
                     /inference="COORDINATES: protein motif:HMM:NF012452.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proteasome subunit beta"
                     /protein_id="HET7242707.1"
                     /translation="MTTIVGIKTNEGVVLGSDRRASKGFFIGSKITQKIAKVDDTLAI
                     AIAGQLSDAEYLIRVAKAERKLLELRRGFPLTVKESSRLIANLAYSGLKSYQPYFVEL
                     LVAGVDDNGGHIYAADMSGAITTEDFASSGSGSPIAYGVLESVYHENITNEEAKEIAT
                     KAVAAAMERDPGSGNGIDVLVIPNLVTVTASRR"
     gene            2020..2715
                     /locus_tag="VFI64_05140"
     CDS             2020..2715
                     /locus_tag="VFI64_05140"
                     /inference="COORDINATES: protein motif:HMM:NF012452.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242708.1"
                     /translation="MSDNSFTNVGFSGNNRYSSYYGPGGRLIFVDSALEAVNKGSTTI
                     GIKTPNFAIISSQIKPTRPLVEPSEKIFSIDDHVGATGSGYIGDILQLIDEIRLYAQK
                     HSVSFETPIEIGSLARHISSYLHTFTIYSVRPQAASILIAGKDQTGIQLYQIDPSGTY
                     FKGSAFAIGQSSEIALEVIQQEYKENMSVEQAIQLSNNAIEKALAEKPLIATGLISLV
                     DGKFKKLEATIMS"
BASE COUNT         1019 a          542 c          609 g          868 t
ORIGIN      
        1 ccgtaacaat tttgctagta gtaattcaca atcacacttt agttcgtaag gttcattgag
       61 agctgtgcat gtttgtcact ccaatgtgca acgaacatcc ctatattgtc ttcaatccct
      121 tcctttgagc gtgtcatgaa catatcacca aatctccatc caaactcact gcagtctctg
      181 cactctccct catacgatga agtatatcca taggcttctc ttactacaca ttttgatgga
      241 gaatctaatt caaaatacca tttaaaccac gaaaaggata gggcaaaggg aagcttttga
      301 ggtacaagcc tttttgccta gtctggagca atttcattca gtcccaatgg tttatgaatg
      361 acatcctcaa ctaaagtcaa ttgttaatct taaccatcat aggttatgct ccctagtaat
      421 taagcatagt aactgcaaga ctattaactt acctttagta tactttttga tttatatttg
      481 gctgggtctc tataagaaag aagagggata tattcaaaat agaactatct ggatctgcaa
      541 agggattcga agagcaggat gctaatcaat atgtaaatga aaatcaggaa tgcgagaaca
      601 gcaaacaaaa atttgacgat gacataataa ttggtggaaa aaaagcgata caggtccaaa
      661 ttccaaaacc gggtaacgta aaggaatctc caaaattgga ggatgagctt cacaataatg
      721 ataagaaaat tctatcatta ttaatcaatg aagatagctc ccgtttttca tttactggaa
      781 tgaagaggaa actaaacgtt catcagcaga gtctcgctcg agccttggct aggctggaag
      841 agttaggttt agttgagaaa tctgatgcag gctatggctt gaataaaaat gcagaggtct
      901 ttacttcgtc cggtaaaatt gtcaagaaac cctcacctat attctcaagg agcagtatta
      961 acttccaact tcttcacgcc agcatacccg ttcaaatcga agttgagcag atattgatag
     1021 gtctacatgg aaagtggttc gataaatatc gatttgtgga attgaagaaa actaacaatg
     1081 gatacgcttt aaaatgggta aatgaagcga cgtcgtacga gcttacccta ataataatag
     1141 gaaattattg tgtcatagag accaatgcta tatcaggaga atccagacta gaagctatgt
     1201 ttggtgccag tagaataatc aaggagatta cagcaatact tcaaagaaaa ttagatgact
     1261 tcagtgtcag tacaataaaa atcgatgaga ttagtttaac tgaacatgtg aattaattga
     1321 taacggatag atcggataga taaagtctcg cctgaagact aaatcatgtg actcattttt
     1381 tcaatactag tcattttatt cttgtggttt gtatataatc atgaaatata gtgacaacca
     1441 tagttggtat caaaacaaac gaaggcgtgg ttttaggttc agacaggaga gccagcaagg
     1501 gtttcttcat tgggtctaaa ataacacaaa agatagctaa ggtggatgac acacttgcta
     1561 tagcgatagc aggtcagcta tccgatgcag aatacttgat cagagttgcg aaggcggaac
     1621 gaaagctttt ggaattgcgt cgcggatttc cgcttactgt gaaagaatct tcgagattaa
     1681 ttgcgaattt agcatactct ggtctcaaga gctatcaacc atattttgta gaattacttg
     1741 tagctggtgt cgatgataat ggaggacata tttatgctgc agatatgagt ggcgcaataa
     1801 ctaccgagga tttcgcttct tccggttcag gctctcctat agcatatggt gtacttgaaa
     1861 gtgtttatca tgagaacata accaatgaag aggctaaaga gattgctaca aaggctgtag
     1921 ccgcagcaat ggaacgtgac cctggatctg gtaacggaat tgatgttctc gtaattccga
     1981 acttggtaac agtaacggcg agtagaaggt gatatagaat tgtcagataa tagctttaca
     2041 aacgtaggtt tttcgggaaa taatcgatac tcgtcatact atggacccgg ggggaggtta
     2101 atattcgtag atagtgcact tgaggccgtt aataaagggt caacgaccat aggaataaag
     2161 acaccaaact ttgccataat atccagtcaa ataaaaccaa cgagaccact cgtagaacca
     2221 tccgaaaaga tattctcaat agatgatcac gtcggtgcga caggatcagg atacattgga
     2281 gatatcttgc aacttatcga tgagattaga ttgtatgcac aaaaacatag cgtttcattt
     2341 gaaactccga tagaaatagg atcgttggca agacacataa gttcatatct tcatacattc
     2401 acaatatatt cagtcagacc acaagcagcg tctatactaa tagctggcaa agatcaaact
     2461 ggaattcagc tctaccagat cgatcctagt ggaacttatt tcaaaggttc tgcatttgcc
     2521 atcggacaat cctcagaaat tgctctcgaa gtaattcaac aggaatataa agaaaatatg
     2581 agtgttgaac aggcaattca attaagtaat aatgccattg aaaaagcact tgctgaaaaa
     2641 ccgttgatcg caacaggttt gatctcgttg gtagatggta agtttaaaaa attggaggcg
     2701 acaattatgt cataatacat cgtaaacaaa ctctaccatt gtggagaata atcattctag
     2761 acatggttcg accatatgta ctaatttaga agagacgacc cccccttgag gtaccttgcc
     2821 tgatgattga tgattgatga ttgtccctca gacattttca caattttata gtttagaaga
     2881 aaaatccaca ctcatgagat ctgcaacatg atatgagctt tttttaaagt cgccttagaa
     2941 gtaatgtttt aaagtcccct ctaagctata ttgaataata caaaagtaat atggcctaca
     3001 aatccttcat tgttctatgt tttgttatat tttttgga
//
LOCUS       DASSIK010000273         2558 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_753537, whole genome shotgun sequence.
ACCESSION   DASSIK010000273 DASSIK010000000
VERSION     DASSIK010000273.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2558)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2558)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2558
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_753537"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..434)
                     /locus_tag="VFI64_05145"
     CDS             complement(<1..434)
                     /locus_tag="VFI64_05145"
                     /inference="COORDINATES: protein motif:HMM:NF019845.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding alcohol dehydrogenase family
                     protein"
                     /protein_id="HET7242709.1"
                     /translation="MRALRAEKFSGYEGLKLVDLPKPTVSDGKVLLRMTAAGVTPLDH
                     TILSGQFPFSKAPLVLGNEGAGVVEEGGGTDFPVGSRVMFTGPYGVFEDGAYSEWLAV
                     RKESLCPIPEGVDDVSAAGIPVAYVTAKMALTLAGFQAGKTVL"
     gene            603..1076
                     /locus_tag="VFI64_05150"
     CDS             603..1076
                     /locus_tag="VFI64_05150"
                     /inference="COORDINATES: protein motif:HMM:NF024212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family winged helix-turn-helix
                     transcriptional regulator"
                     /protein_id="HET7242710.1"
                     /translation="MKERNTNAILEQGMSGGSCTCGELRKAARAITLLYDNAFKSSGL
                     LSTQLGVLNFISNNDSIRISDLAKKQGLDRTTLTRNLSVLERQGFIKISSGKDHRTRI
                     VTATQKGRSAVAKALPLWNEVQTKVKQQMGENSWRELMQNLGHFVTVADQLIDQN"
     gene            1275..>2558
                     /locus_tag="VFI64_05155"
     CDS             1275..>2558
                     /locus_tag="VFI64_05155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242711.1"
                     /translation="MALHHVQKPSKPFVITSVIMLLFGSVLGALWMMALYGVALPPGL
                     IDIIRLHRSVQFDGFITMLIMGIGYMIVPRFRNIPLPSPKLAYISYVLMVGAVIIPIM
                     TSTSITNTSQWLTSSFIGAWIFCKVGAVTIFGGLIIAILRTRPKLLGMVDYHIALSII
                     LLAILTISQILNHDYKSSTIQLWFMFPIVMIFGIEYKTLPAFVGFVRPKNRMAASSVA
                     LLSASAGFGLMLLFYSDSQIIETLFYSTFLMGVITFSFALNIFVGFDNKQILELSMGE
                     KKARYQYTLVHVKLSFMFLFLGITLSIISLFFADLFSLYDMWIHITAIGFIGITIALY
                     LPMMLPPIIGRTVRFSHFSKIPLSLVIISLCIRALGHFFIQIFPHTNVIPYLYLAGLL
                     GMSGWLVVLAILSFMFMVHRSMSSATAIVNEDGTSP"
BASE COUNT          726 a          530 c          513 g          789 t
ORIGIN      
        1 agcacggtct tgcctgcctg aaaaccagcg agggtgagag ccatcttcgc ggtgacatac
       61 gcgaccggaa tacctgctgc gctcacgtcg tcgacgccct caggtatcgg gcaaaggctt
      121 tccttccgta ctgcaagcca ctcactgtag gctccatcct caaaaacgcc atacggccca
      181 gtgaacatca cacgtgaacc tacaggaaag tccgttccgc ctccctcctc caccacgccc
      241 gctccttcgt tacctaggac tagcggcgcc ttcgagaaag ggaattggcc ggagagaatc
      301 gtatggtcga ggggcgtgac accagctgca gtcattcgca gcagtacttt tccgtccgag
      361 accgttggtt ttggaagatc tacgagcttc aacccttcat aaccactgaa tttttctgct
      421 ctcaatgcac gcatatcagt tcccctgtct acgggtaata atttttgttt gattcatatt
      481 aaataggtgt atatgcacac atttataagt gtatctacac gtatctaatc taagaacatc
      541 atatgtgaag atatcgtagt aaacctttta ttagtaatga gtgtatatca acctagtcaa
      601 gaatgaagga acgaaatact aatgcaatac tggaacaagg aatgtctgga gggtcctgta
      661 catgtggtga attgaggaag gcagctagag caataacact actttatgat aatgcattca
      721 agtcaagtgg gttactgtcc actcaacttg gagtactaaa tttcatctcc aacaatgact
      781 caataagaat ttcagatctt gctaagaagc aagggctgga taggacgacc ctgacccgga
      841 atctatctgt tttggagaga cagggtttta tcaagatctc atcgggaaaa gaccaccgaa
      901 cgagaattgt gacagctact caaaaaggac gtagcgctgt agccaaagct ctccctctct
      961 ggaatgaagt tcaaacaaag gtaaagcaac aaatgggtga aaactcatgg cgtgaattaa
     1021 tgcaaaattt gggccatttt gtaacagtag ctgatcaatt aattgatcag aactaattaa
     1081 tccaacacac aagattcata gtaattgaaa gaactatctg gacaccatgg tggtacgata
     1141 actgattgac gctcccttgc agatagctat gtgataaaaa ctatttcaag aatttaagac
     1201 tgttattgca tagcattaca tagcattaca tagctagcta tataatagct agaactttca
     1261 catcgataac gaagttggct ttacatcacg tacaaaagcc tagcaaacca tttgtaataa
     1321 catcggttat catgttattg tttggttctg ttttgggcgc tttatggatg atggcgctgt
     1381 atggtgtagc cttaccacct gggctaattg acattattag attgcacagg tcagtacaat
     1441 ttgatggttt cataacgatg cttataatgg gcataggata catgatagta cctcgattta
     1501 gaaatattcc tttaccctca ccaaaattag catatatttc gtacgtgctt atggtgggcg
     1561 ctgtcattat tcccataatg acatcaacat caatcacaaa cacatcacag tggctcacta
     1621 gcagtttcat tggtgcctgg atattttgca aggtaggtgc tgttactatt tttggaggac
     1681 tcattattgc gatattgaga actcgaccaa agttattggg aatggtagac tatcacattg
     1741 ctctctccat aatactctta gctatactta ctatttctca aatattaaat catgattaca
     1801 agtcaagtac tattcaatta tggtttatgt ttccgatagt catgatcttt ggtatcgaat
     1861 acaaaacgtt accagctttt gtgggttttg ttaggcccaa aaacaggatg gcagctagct
     1921 ccgtggcgct attatcggcg tccgcaggat tcggtcttat gcttcttttt tatagcgata
     1981 gccagataat tgagacgtta ttttattcca catttttgat gggagtaatt actttctcat
     2041 ttgccctaaa tatctttgta ggattcgata ataagcagat tttagagctc agtatgggtg
     2101 aaaaaaaggc tagatatcag tacactcttg ttcatgttaa attatctttc atgtttcttt
     2161 tcttaggaat taccctatcc ataatttccc tattttttgc cgatttattt tccttatacg
     2221 atatgtggat acatataact gccattggtt tcataggtat tacaatcgca ttgtatttgc
     2281 caatgatgtt gccaccgata attggtagaa cggtacgctt ctcgcacttt agtaaaatac
     2341 cgctttcttt ggttattatt tcactttgca ttagggctct gggacatttt ttcatacaga
     2401 ttttccctca tacgaatgta ataccgtatc tctacctagc aggcctacta ggtatgtctg
     2461 gatggcttgt ggtattggcc attctctcat ttatgttcat ggtacatcgc tctatgagca
     2521 gcgctacagc aattgttaat gaagacggta cttcacct
//
LOCUS       DASSIK010000274         2324 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_449479, whole genome shotgun sequence.
ACCESSION   DASSIK010000274 DASSIK010000000
VERSION     DASSIK010000274.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2324)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2324)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2324
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_449479"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..810)
                     /locus_tag="VFI64_05160"
     CDS             complement(<1..810)
                     /locus_tag="VFI64_05160"
                     /inference="COORDINATES: protein motif:HMM:NF014010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate uptake regulator PhoU"
                     /protein_id="HET7242712.1"
                     /translation="MPTVDNNETRKLQFTGRSTFIISLPKKWMAEMQLRVGDPVTIVR
                     GMHSSLSIFPNIMRTSLTEECTCKVSGKEGANTVKRKVISMYLRGYNIIHIKPEGERF
                     LPKQRDAVREVVNRNLIGAEIIEDSSELITVTILMGIAAGLSMNTALRRMFLIGVSMH
                     RDAITALCSNDKELAKNTIRADDEVDRFSLYLLRNLVIASQHERLLYEIGLKKPTDCF
                     AYRAAGKSLERIADHGSRIAYECQHTEMKLPNEVLLKIKEMSEMSLKLVDNS"
     gene            complement(909..1505)
                     /locus_tag="VFI64_05165"
     CDS             complement(909..1505)
                     /locus_tag="VFI64_05165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoU domain-containing protein"
                     /protein_id="HET7242713.1"
                     /translation="MATLSEESVNAALESYEKGVMLRPQIFEYSEKLRILQLEVADFA
                     TELIARYQPVARDLRFIQSCMDVAYGFSRFGRYAYDISDVLEAIGPIPDCDKSYVIEM
                     ANTAKNMIKLSVESLKKLDKDTSQKLYMMDDSVDALYRSYLRFVLTPRDREYAYAEVR
                     CFISALLILRYLERIADHACYISDCVHYIVTADSSPRR"
     gene            complement(1568..>2324)
                     /gene="pstB"
                     /locus_tag="VFI64_05170"
     CDS             complement(1568..>2324)
                     /gene="pstB"
                     /locus_tag="VFI64_05170"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HET7242714.1"
                     /translation="RYKVVIKEINAWFGRKQALKNINLNIKDKSVTAFIGPSGCGKTT
                     LIRCLNRMHEMTPNARVGGQVLVDGADIYDKSIDPVVVKRRVGMVFQKPNPFPTMSIS
                     DNVAAGLKLNGIKDKNLIAEVVEESLKGAALWDEVRSELDKPGMSLSGGQQQRLCIAR
                     ALAMQPEVLLMDEPTSALDPLASSKIEELVRSLKEHVTIVIVTHNMQQAARVSDFTAF
                     MYLGEMIEYGATSQIFKNPEKELTERYISGKFG"
BASE COUNT          627 a          533 c          408 g          756 t
ORIGIN      
        1 ggaattgtct actaatttaa gtgacatctc gctcatctct ttaatcttca gcagtacttc
       61 gttaggcaat ttcatctcag tatgctgaca ttcataggca atgcgtgagc catgatcagc
      121 aattctttca agactttttc cggcggcacg ataggcaaaa cagtctgtag gcttcttcaa
      181 ccctatttca tacaaaagtc tttcatgctg tgatgcgatt acgagatttc taagcagata
      241 caagctgaac ctatcaactt catcgtccgc tcttattgta ttcttcgcta actccttatc
      301 gttgctgcac aatgcggtga tagcatccct atgcatagat acccctatca gaaacatcct
      361 tcttaaggcg gtgttcattg acaatcctgc tgctatgccc attaaaatcg tgacagttat
      421 gagctcggat gaatcttcaa ttatctcggc gccaataaga tttctgttaa ctacctctct
      481 cacagcatca cgttgtttag gaagaaatct ttctccctca ggctttatgt gtataatatt
      541 gtaaccacgc aaatacatag atattacctt gcgtttcaca gtattcgcgc cttccttccc
      601 actaactttg caggtacatt cttccgtaag tgatgttctc ataatatttg gaaatattga
      661 aagtgagcta tgcatccctc gtacgatagt tacggggtcg cctactctga gttgcatttc
      721 agccatccat ttttttggca gtgaaattat gaaagttgat ctacctgtaa attgaagttt
      781 gcgagtttca ttattatcca cggtcggcat acaagctcaa tgggattatt atcatacctc
      841 acttatgcat tttatcactt gtgatcatat gccactatag gatctaaata gaggctagtt
      901 tgtcacattc atcttcgagg actagagtca gcagtgacaa tgtagtgaac acaatcgctg
      961 atataacagg catggtcggc aattctttct aaatatctca gtataagcag ggcagagata
     1021 aaacacctta cttctgcata agcatattct ctgtcccgtg gtgttagcac gaatctcaag
     1081 tatgatcgat agagtgcgtc cacactatca tccatcatat agagcttttg tgaagtgtcc
     1141 ttgtcgagtt tttttagtga ttccacgctc agtttaatca tatttttagc tgtatttgcc
     1201 atttcgatga cataggactt gtcgcagtct ggaataggcc cgatcgcttc cagtacatct
     1261 gaaatatcat atgcatatct gccaaatctt gaaaagccgt atgcgacatc catacaagac
     1321 tggatgaatc taagatctct tgctactggt tggtatcttg ctattaattc agttgcaaaa
     1381 tccgccactt ctagctgaag aattctgagc ttttctgaat attcaaagat ctgcggccga
     1441 agcataactc ccttttcata tgattctaaa gccgcattaa cagactcctc tgacagagtg
     1501 gccatgtcca ttattagatt tctgatgcga tctaacccta tgtcaagaag ccgagccaag
     1561 ctacgtacta tccaaacttt ccagagatgt atctctctgt caattctttt tctggattct
     1621 tgaatatctg acttgttgct ccgtattcaa tcatctctcc tagatacata aaagccgtga
     1681 aatctgacac tcttgcagcc tgctgcatat tatgtgtcac gattacaatg gtaacatgtt
     1741 ccttaagact acgtacaagc tcttcaattt ttgaagatgc caatggatct aaagctgatg
     1801 ttggctcgtc catgagtaac acttctggct gcatcgcaag tgctcttgca atgcaaagtc
     1861 gctgttgttg gcctccagac aaactcatgc ctggcttgtc aagttcagat cttacctcgt
     1921 cccataatgc agcgcctttt agactttcct ccacaacttc tgcgattaga ttcttgtctt
     1981 taatcccatt tagtttcaac ccagcagcaa cattatccga tatactcatc gtgggaaatg
     2041 gatttggttt ttgaaacacc attcctacac gtctcttaac aactaccgga tcaatggatt
     2101 tatcatatat atctgcgcca tcaaccaaca cttgacctcc tactcgagca ttgggagtca
     2161 tttcatgcat acgattgaga catcgaatca atgtggtttt gccacatcca gacggtccta
     2221 taaaagcagt tacggattta tctttaatat ttaaattaat attttttaag gcttgctttc
     2281 gaccaaacca ggcatttatt tccttaataa caactttgta ccta
//
LOCUS       DASSIK010000275         2402 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1059517, whole genome shotgun sequence.
ACCESSION   DASSIK010000275 DASSIK010000000
VERSION     DASSIK010000275.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2402)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2402)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2402
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1059517"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1095)
                     /locus_tag="VFI64_05175"
     CDS             complement(<1..1095)
                     /locus_tag="VFI64_05175"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HET7242715.1"
                     /translation="MKQSVENVLVLQGGGSLGAFACGVMKAFAKKDIKFDIISGTSIG
                     AVNGAIIAASKGDNPSEDLENFWLELAESSIKIIPDFYTLDYDRKNNAMVVVKSPSAS
                     LNSTLFGVPKFFIPRWFRPVIDFNEFPQDWTYLYDNTPLAQTIEKYVDFKRLSPGSLL
                     ADQDNNPNTIRLVVTAANVLTAEPIVFDSGKIQINVKHLLASTGYPQYGFPWVEAQKN
                     VFGWDGALLSNSPIREVLDASPSVNKHVFMIENYPRKIERLPANMTEVQSRAKDIMFC
                     DKTSSLIKLSKFINKQVDLIERLYDALHQCEHSHLTTDQMGEIEKSYDLLVKRHGAKI
                     LSVTRIIRKSPERPYSQQNADFSVDTIKQII"
     gene            complement(1253..1777)
                     /locus_tag="VFI64_05180"
     CDS             complement(1253..1777)
                     /locus_tag="VFI64_05180"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HET7242716.1"
                     /translation="MSVLILDGLILPLDIIKYKNRYLMLIVMTKNVSEIMTVKIETIG
                     LEDTAQAAARKMKEKNVSSLVVMDGNDQAVGIVTERDLVTQVCCREASSNEYVIRHIM
                     SSPVATIDPDSTVETAASLMQQNKVKHLVVVDENKTVGIITSSNLIKYLDGQLELDDV
                     NAKILATAFSEEPM"
     gene            complement(1818..2153)
                     /locus_tag="VFI64_05185"
     CDS             complement(1818..2153)
                     /locus_tag="VFI64_05185"
                     /inference="COORDINATES: protein motif:HMM:NF026297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HET7242717.1"
                     /translation="MKYRSMNEIFASILSSVTENDGLDFTKIMCNCYLSYGQVTRFLQ
                     FANENDFLVYDNNTELFKITNKGLQFLELYGKMDNLHKERQTGVIGSVIILLLYALYP
                     LFPVLGDFI"
BASE COUNT          710 a          489 c          402 g          801 t
ORIGIN      
        1 tatgatctgt tttatagtat ctactgaaaa gtcagcgttt tgttgagaat atggccgttc
       61 cggactcttg cggattattc ttgtaacact caatatcttc gccccatgtc gcttaactag
      121 aaggtcgtaa cttttttcta tctctcccat ttgatcagtt gtaagatggg aatgttcaca
      181 ttgatgtaac gcgtcgtaca atctttctat tagatcaact tgtttgttaa taaacttcga
      241 gagctttatg aggctggaag ttttatcgca gaacattata tcttttgctc ttgactgaac
      301 ttcagtcata tttgctggaa gtctttctat ctttctcgga taattttcaa tcataaagac
      361 atgtttgtta actgaaggcg aagcatctaa aacttcccta ataggactat tacttaagag
      421 agcaccgtcc catccaaata cattcttctg ggcttccacc catggaaatc catattgggg
      481 atatccagta ctagccaaaa gatgctttac atttatttga atttttcccg agtcaaagac
      541 aattggctca gcggtaagta cattggccgc tgttactact aaccgtattg tattggggtt
      601 attgtcttga tccgcaagca atgaaccagg agaaagcctt ttgaaatcta catatttttc
      661 tatagtttgt gccaatggtg tattatcata aaggtatgtc caatcttgtg gaaattcatt
      721 aaaatcaatt actggtcgaa accacctggg aatgaaaaat tttggaacgc caaaaagtgt
      781 ggagtttaag gaagcggacg gcgatttaac caccaccatg gcattgttct tccgatcata
      841 atctaaggtg taaaaatcag gtattatttt gatactactc tcagccaatt ctagccaaaa
      901 attttctaaa tcttcacttg gattatctcc cttactcgca gcgataatcg ctccgttgac
      961 ggcccctata gaggtacctg aaataatatc gaattttata tctttcttgg caaaagcttt
     1021 cataaccccg caggcaaacg caccaagtga accaccacct tgcaaaacta atacattttc
     1081 aactgattgt ttcaagtctt tatctctgta tagtaagcgg tctataatcc ttagttaaca
     1141 atgatcgctg tgctcggact gagccacgtc tgcagcgttc accttccgta tattttgctg
     1201 ttaagatatt agtaggttga aagttgatct acttcaattg ccagattgga aattacattg
     1261 gttcttcaga aaaagcagtt gccaatattt tcgcatttac atcatccagt tccaactgac
     1321 catccaagta cttgataaga ttacttgaag taattattcc taccgtctta ttttcatcta
     1381 caaccaccaa atgttttacc ttgttctgtt gcatcaaact ggcagctgtc tctactgtcg
     1441 aatctggatc tatagttgcc acaggtgaag acatgatgtg tcgaataacg tactcgttac
     1501 tacttgcctc tctacaacat acctgtgtga caaggtctct ttcggtaaca ataccgacgg
     1561 cctgatcatt tccgtccatt acaactaatg aacttacgtt cttctctttc atttttctgg
     1621 cagctgcctg cgcagtatct tctaacccaa tagtctcaat cttcacagtc attatttcac
     1681 ttacgttctt cgtcatgact atgagcatca agtatctatt tttatacttt attatatcca
     1741 gaggtaatat caagccatcc aatattaata ccgacatctc ataacgtccg tccccaatca
     1801 gagtgaataa tttttctcta tatgaaatca cccaaaaccg gaaatagagg gtaaagggca
     1861 tacaaaagaa gaataattac tgaaccaata acaccagttt gtcgttcctt gtgcaagtta
     1921 tccatcttgc catacagctc taaaaattgc agtcctttgt ttgttatttt gaacagctcc
     1981 gtattgttat catataccaa gaaatcattt tcatttgcaa attgcaggaa tcgagtcacc
     2041 tgtccatatg aaagatagca attgcacata atttttgtaa aatcaagtcc atcattttct
     2101 gtaactgagg atagaatgga tgcaaatatc tcattcatgc tacggtattt cattatgcaa
     2161 ggatagaagt tggttactaa taagcaggta ggataacgaa tactagatca tatttctgaa
     2221 tttgattaaa cagccttgga ataactgaat atttgtcaat gaatatcact cagacaaacc
     2281 aatttttcaa ataaatgtgc ttcgatgtaa attagatatc tgggcttatg attgaaacat
     2341 ttatgccact tgatgcatct ttgctattaa attcatttaa tatgaaatac ttcgttggca
     2401 tg
//
LOCUS       DASSIK010000276         2162 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_450362, whole genome shotgun sequence.
ACCESSION   DASSIK010000276 DASSIK010000000
VERSION     DASSIK010000276.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2162)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2162)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2162
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_450362"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..431
                     /locus_tag="VFI64_05190"
     CDS             <1..431
                     /locus_tag="VFI64_05190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HET7242718.1"
                     /translation="KSREIYEAPAATAIIEAHRDLEKMVLTNFEFRFKQTVEEEWSWL
                     AYSGLWFDPLREDLDTFIDATQKRVTGKVRMKLQNGSLNVVGRKSQFSLYSNDLATYT
                     SKSTFDQRLAKGFVELWGMQTVLANSLKTSDSRKEGEKIT"
     gene            428..601
                     /gene="lysW/argW"
                     /locus_tag="VFI64_05195"
     CDS             428..601
                     /gene="lysW/argW"
                     /locus_tag="VFI64_05195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019878 - lysine biosynthetic process via
                     aminoadipic acid [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-aminoadipate/glutamate carrier protein
                     LysW/ArgW"
                     /protein_id="HET7242719.1"
                     /translation="MNIECKDCGAQITVTQDSMVGEIITCPDCGADFEITLKKGELIE
                     IKPAESVGEDWGE"
     gene            602..1462
                     /gene="lysX"
                     /locus_tag="VFI64_05200"
     CDS             602..1462
                     /gene="lysX"
                     /locus_tag="VFI64_05200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine biosynthesis protein LysX"
                     /protein_id="HET7242720.1"
                     /translation="MVQVCVIYDKIRFEERILHNKIKEKGFTSNLVDGKSLVFNTNSE
                     KEDFELGDIIFQREISHYRGLYVTSCLESLGFKVINPFSVSEICGNKLLTSLALVKHH
                     VPTPNTSFAFSSSSALQLMDKLGYPLVVKPLVGSWGRGVYLIKDRSAAEILIDSREEI
                     GSPLSRIYYIQEKIDRPPRDIRCIVIAENIVASVYRTAAENEWLTNVAIGGTTEQAQM
                     NPELEEITLRAAKAVGGGILGIDLMEDTKRGYLVHEINNTVEFRGASMVSTQDIPAAM
                     IDYLVHECRK"
     gene            1605..>2162
                     /locus_tag="VFI64_05205"
     CDS             1605..>2162
                     /locus_tag="VFI64_05205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HET7242721.1"
                     /translation="MKVGVIGASGYVGGELLRLLVVHPKVEISMVTSRQHVGEYVHRV
                     HPSLKSFIDLTFSPMDIDKLTSNCDIVFVSVPHGNAVNVVKELYERGIKIIDLSADFR
                     LKNPKDYVKWYGWEHPFPEMLSKSTYGVPELYRNQIKESKLVSCPGCMAVTSILALKP
                     LIEKNLVDTEHVIVDSKIGSSGAGSQ"
BASE COUNT          717 a          350 c          498 g          597 t
ORIGIN      
        1 tcaagtctcg agaaatttac gaagctccag cagccactgc cataattgaa gcacacagag
       61 accttgaaaa aatggttctc acgaattttg aatttagatt taagcagact gttgaggagg
      121 aatggagttg gttagcatat agtggacttt ggtttgatcc cctaagagaa gatctggata
      181 catttataga tgcaacccaa aaaagggtta ctggaaaagt aaggatgaag ctgcaaaatg
      241 gatctttgaa tgttgttgga agaaaatctc aattttcgtt gtatagtaat gatcttgcaa
      301 catacacttc taaatcgaca tttgaccagc gtttggccaa gggttttgta gaattatggg
      361 gcatgcaaac agttcttgca aatagtctaa agacaagtga ctctagaaaa gaaggtgaga
      421 aaataacatg aacatagagt gtaaggattg tggagcgcag ataaccgtga cacaagactc
      481 gatggttgga gaaatcataa cttgtcctga ttgtggtgct gattttgaga taactcttaa
      541 gaagggagaa ttgatcgaaa tcaagccagc agaatcagtc ggcgaagact ggggagaata
      601 gatggtgcag gtatgtgtaa tttacgataa aattcgtttc gaagaaagga tactgcataa
      661 caaaataaag gaaaaaggtt ttacatccaa tcttgttgat ggtaaatctc tagttttcaa
      721 tacgaattca gagaaagaag actttgagtt aggggatatc atttttcagc gagagataag
      781 ccactataga ggtctgtatg ttacctcgtg cttggaatca ctagggttta aagtgatcaa
      841 tccattttct gtcagtgaaa tatgtgggaa taagctactc accagcctag cattagtgaa
      901 acaccacgtg cctactccca atactagctt tgcgtttagc tccagctcag ctcttcaatt
      961 gatggataaa ttaggatatc ctctggtagt gaaaccactt gtaggatctt ggggaagagg
     1021 agtttattta attaaagata gatcagcagc tgaaatatta atagatagta gagaggaaat
     1081 tggaagtcca ctttctcgaa tttattatat ccaagagaag atagatcgtc cgcctaggga
     1141 tataagatgc atagtcatag ctgaaaatat tgttgcatca gtttatcgaa ctgctgcaga
     1201 aaacgaatgg cttacgaatg tggcaattgg tggaacgacg gaacaagcac agatgaatcc
     1261 tgagttggaa gaaatcacgc taagagctgc aaaagctgta ggtggaggaa tacttggcat
     1321 tgacttgatg gaggatacta agagaggata cttggttcat gaaatcaata acacggttga
     1381 atttagggga gcctcaatgg tttctacaca agatattccc gcagccatga ttgattacct
     1441 ggtccatgaa tgcaggaagt aaggacccag ccaaatatta actcgactgt aagaaaagct
     1501 tccttgactt tggactatgg aacacttcga actcattcac aacacttaca gataataaaa
     1561 ttcataagat gctatattga gactttttca aaggattcaa agttatgaaa gtaggagtca
     1621 taggagcatc tggctacgtc gggggcgaac ttttgagatt attggttgtg catcccaagg
     1681 tagaaataag catggtcacg tcaaggcagc acgttggaga atatgttcac agagtacatc
     1741 caagtctgaa aagcttcata gacttgacat tttcacctat ggatatcgac aagctaacca
     1801 gtaattgcga tattgtgttt gtttctgttc cacatggaaa tgcggttaat gtcgtcaaag
     1861 agctttatga aagaggtatc aaaataattg atttatctgc agattttaga ttgaagaacc
     1921 ctaaagatta tgtgaaatgg tatggatggg agcacccttt cccggaaatg ctctcaaaat
     1981 cgacttatgg agttccagaa ctatatagaa atcaaattaa agaatcgaaa ctagtatcct
     2041 gcccaggatg tatggcagta acatcaattc ttgcattaaa gcctttgatt gagaaaaact
     2101 tggtagatac ggaacatgtt attgttgata gcaagatagg ctcttcgggc gctggctctc
     2161 ag
//
LOCUS       DASSIK010000277         3932 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_450532, whole genome shotgun sequence.
ACCESSION   DASSIK010000277 DASSIK010000000
VERSION     DASSIK010000277.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3932)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3932)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3932
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_450532"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..365
                     /locus_tag="VFI64_05210"
     CDS             <1..365
                     /locus_tag="VFI64_05210"
                     /inference="COORDINATES: protein motif:HMM:NF014310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242722.1"
                     /translation="NANFSTQELFNSATLEGCSDVTTLRDEIKHDIALNDITKLIIEK
                     LEHYYLLLEDGKTREIIESWKQGSEIFGQRVTVNDGNNVFNGRALDLDDSGALLITLV
                     DGSVKKILFGEVRISYAV"
     gene            526..2352
                     /locus_tag="VFI64_05215"
     CDS             526..2352
                     /locus_tag="VFI64_05215"
                     /inference="COORDINATES: protein motif:HMM:NF014763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HET7242723.1"
                     /translation="MLGTAFSKNNIILLLVIAIVGIGLAIISYQYSTITASEIAEIAA
                     QDVKSNANIEVYELARILVRSIESISINLRTLSTAILFSENGNMGAYNLMNAAQNGTS
                     ELTEGYYLIDEEGKLLATSDNNNLGSNSIGQNLSNKEYFSVPKMTNKPYFGTAVEAKN
                     KFSHLYISFPIITKYNGSNDTTNLNNRESDFKGVVVATISLGDLGRFLQKELSPNFES
                     TLGLIDRNGVILYSRNEEVVGRNYLAPEFQSLIPAEIKDSYNKILENGLQGKSGSQDF
                     LLRGNVTTLAYQPVVIDGRHIWTLYLSAPHNLASNVGFLINQQKNFSTIVVIVIGSLA
                     FGIAFLILSWNKRLEGAVTSRTLELKKANESLIESNMLLASANKQLEIHDRMQKEFIN
                     VAAHELRTPIMPILGEAELIEDKFNGKSSAEVDKDQIAVIIRNAKRLDRLAADILDVT
                     RIEGKSLQLNKERFNIDEILSQIVKETRRLIEKDPMRNGKVDIEYESINIEVNADKSR
                     ITQVVSNLVSNAIKFTQEGTISISCKIEEKEILLLVRDSGRGIDSEIHSRLFSKFASK
                     SEQGTGLGLFISRSIVESHGGRIWAYNNEGSKGATFIFTLPT"
     gene            complement(2460..3863)
                     /locus_tag="VFI64_05220"
     CDS             complement(2460..3863)
                     /locus_tag="VFI64_05220"
                     /inference="COORDINATES: protein motif:HMM:NF025042.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HET7242724.1"
                     /translation="MSTATIHNKRLLLKQNSGVQSLKIALVAVEVALKSVDPFLLVKN
                     SMKLTGSELCINDVDRRSKGFNLSLFDRIYIVGAGKATAGMSEAVIHILGGRVSGGAI
                     TIPYDISTRRSILSITHAGHPLPDKNGLEGTKKILSVLDNVTSNDLVFVLISGGGSAL
                     MPLPMNGITLAEKQKITSTLLASGASIDEINIIRKHLSAIKGGRLAKILGKGSTLISL
                     IMSDVVDDRIDIIASGPTAPDKSTFHDAKLVLQKYKLWNSGKFALKSVMKIIDEGIRR
                     KIEDTPKPSDPVFKKVHNILIGSNAVACKSVFSYLNSQGIKTMYLGSSFVGKASNHGY
                     FLHKLVDDFLPPSVPYAFVLGGETTVELGTKISGRGGRNHEAALAAAVKFKSWTNKDF
                     TILCLGTDGIDGNSNAAGAIVTPKTMSEISKQNLDLSPYLRRHDSYTLFKKLKSIIVT
                     HKTGTNVNDISIVCRVK"
BASE COUNT         1256 a          721 c          752 g         1203 t
ORIGIN      
        1 tgaatgctaa cttttcgacc caagaattat tcaattcggc tactttggaa ggatgttctg
       61 acgttactac tctaagagat gaaataaagc acgacatcgc attgaacgac atcactaaat
      121 tgataattga aaaattagaa cattattatc tgcttttgga agatggcaag acaagggaga
      181 ttatagaaag ctggaaacag ggatcagaaa tttttggaca gagagtgacc gttaatgatg
      241 ggaacaatgt atttaacggg cgagctttgg atctagacga ttccggtgct ttattaatta
      301 ctcttgtaga tggctccgtc aagaaaatat tgttcggaga ggttaggata agttatgccg
      361 tttgatcaaa aatcgtggat aattcaaaaa gaatttgcga gcgtacattg aattattata
      421 ttactttgaa tggtacttat tgtcattata tataatcaat tctgctagaa taatgtttag
      481 cgttaactta tctactagaa cgagaatgtt attcctagta tcttattgct aggaacagca
      541 ttctcaaaaa ataatatcat actccttctc gtaatcgcta tagtgggtat tggattggct
      601 attatttctt atcaatattc tactattaca gcatctgaaa ttgcagaaat tgcagcgcag
      661 gacgtaaagt caaatgcaaa cattgaagtg tacgagctgg cccggatatt ggtaagaagt
      721 atagaatcaa tatctattaa tcttagaaca ctgagcacag ccattttgtt ctcggagaac
      781 gggaatatgg gagcctacaa tctcatgaat gcggcgcaaa atggaactag cgaactcact
      841 gaaggatatt atttgataga tgaggaaggt aaactgctag caacaagtga taataacaac
      901 ttgggcagca atagtatagg gcaaaatcta agtaataaag agtacttttc cgtaccgaaa
      961 atgacgaaca aaccatattt tggtactgct gttgaggcta agaataaatt ttcccatctt
     1021 tatatttcct ttccaatcat caccaagtac aacggatcca acgacaccac taatcttaat
     1081 aatagagaat ctgatttcaa aggggtagta gttgctacca taagtcttgg agacttgggt
     1141 cgtttcttac aaaaagagct ttcaccgaat ttcgaaagca ccttgggttt aatagataga
     1201 aatggtgtca tattgtattc acggaatgaa gaagtagtcg gtaggaatta tcttgccccg
     1261 gaatttcaat ctctgatacc tgcagagatt aaagattcct acaataaaat attggaaaat
     1321 ggtttacagg gcaaatcggg gtcacaagat tttctccttc gtggtaacgt aactacctta
     1381 gcttaccagc ctgttgtcat agatggaaga cacatctgga cattgtattt aagcgcacct
     1441 cacaacctag ctagcaatgt tggttttcta atcaatcaac aaaaaaactt tagtactata
     1501 gtagtcatcg taattggttc attagcattt gggattgcct ttttaatact atcttggaat
     1561 aagcgattgg agggagctgt aacctcgagg acattagaat taaaaaaagc aaatgaatcc
     1621 ttaatagagt ctaatatgct tcttgcctca gctaataaac aactcgaaat tcatgataga
     1681 atgcaaaagg aatttatcaa cgtggcggcc cacgagctta gaactcctat aatgcctatc
     1741 ctaggagaag cagaacttat tgaggacaaa ttcaacggta agagttctgc tgaagtcgac
     1801 aaggatcaaa ttgctgtaat aattcgtaat gcgaagagac tcgatcgact tgcagcagac
     1861 atacttgatg ttacccgcat tgaaggaaag tcattacagt taaacaaaga acgctttaac
     1921 atcgatgaaa tattgtcaca gattgtaaaa gagactcgac gcctaatcga aaaagatcct
     1981 atgaggaatg gaaaggtcga tatcgaatat gaatcgatta atatcgaagt taatgctgac
     2041 aagagcagga taacgcaagt tgtttcaaat cttgtcagta acgcaattaa gtttacccag
     2101 gaagggacaa tttcaatttc ttgcaaaata gaagaaaagg agatattgtt gctagtgagg
     2161 gattcaggaa ggggaataga ttcggaaatt cattctcgtt tattctctaa gtttgcttca
     2221 aaatctgaac agggtacagg actagggctc ttcatctcaa gaagtatagt agaatctcat
     2281 ggaggaagaa tatgggcgta taataatgaa ggttcaaagg gtgctacgtt cattttcact
     2341 ttgccaacat aggccttaga ttagggtcct actaaaccct ccaccttagt ttctattttc
     2401 aataaatata gtgtattacc ataccgtctt tagttcttaa tatgcaagtg agcagtctgc
     2461 tatttcactc tacaaactat tgatatgtca ttcacatttg ttcctgtctt atgagtaaca
     2521 attattgatt tcaatttctt gaataaagtg taactgtcat gtctgcgcag atatggggat
     2581 aaatccagat tttgtttgga aatctctgac atagttttag gagtaactat tgctcctgcg
     2641 gcattcgaat tgccatcaat tccatcagtg cccaagcata aaattgtgaa gtccttattg
     2701 gtccatgatt taaattttac tgcagcagca agagcagctt cgtgattcct accaccccgt
     2761 ccacttattt tggtacccaa ttctactgtt gtttcgcctc ctagaacgaa tgcgtatggt
     2821 accgatggag gcaagaagtc atcaacgagt ttatggagaa aataaccatg gttcgacgcc
     2881 tttcccacaa atgatgaacc cagatacata gttttaatac cttggctatt aagatacgaa
     2941 aacacactct tacaggcaac tgcgttactc ccaataagaa tattatgtac tttcttgaac
     3001 acaggatcag aaggttttgg tgtatcttca atttttcttc tgattccctc atcaattatt
     3061 ttcataacag attttaaagc aaatttccca ctattccaca atttgtattt ttgaagaacc
     3121 aactttgcat catggaatgt cgatttgtct ggggcagttg gtccagaagc aattatgtct
     3181 attctatcat ccactacatc agacattatc aaacttatta aagtacttcc ctttccaaga
     3241 attttagcca gccgtcctcc ctttattgcc gataggtgct ttcttatgat attgatctca
     3301 tcaattgaag caccagatgc taataatgta gaagtaatct tttgcttttc tgccagagtg
     3361 attccgttca ttggtagcgg catcaatgcg gagccgcctc ctgagattaa gacaaatact
     3421 aaatcattac tagttacgtt atccagtact gataatattt tcttggtgcc ttctagccca
     3481 tttttatctg gcaacggatg tcctgcatgt gtaatagaca gtatactccg tcttgtactt
     3541 atatcatatg ggatagtgat tgcaccacca ctaactctac ccccaagaat atgtattacc
     3601 gcctcagaca tgccggctgt cgctttacca gcacctacta tgtaaatcct atcgaatagc
     3661 gacagattaa atcctttaga tctacggtca acatcgttta tgcataattc tgatccagtt
     3721 aatttcatac tattcttgac aagcaaaaaa ggatcaactg attttaaagc cacttcgaca
     3781 gccacaagag caattttaag ggattgaaca cccgaatttt gcttcaacaa aagacgtttg
     3841 ttgtgaattg tcgcagtaga catacattga ggtatttaag gaacggtttt attaatgcga
     3901 tgtagcgtta acgtagattt tgttagaatc at
//
LOCUS       DASSIK010000278         2002 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_645836, whole genome shotgun sequence.
ACCESSION   DASSIK010000278 DASSIK010000000
VERSION     DASSIK010000278.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2002)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2002)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2002
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_645836"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1053
                     /locus_tag="VFI64_05225"
     CDS             <1..1053
                     /locus_tag="VFI64_05225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242725.1"
                     /translation="LTSIMLVIYSADMKQHKKIAIIVSGIFMGLAIFTKVPAFTTIPL
                     VVFLTYSNTRRLRYVLLWIIPTILIPALWPIHAAAVGDLNNWVDGILYQTDRESRPLI
                     NALNTLFQVDPIFFVIGIGGIIYSVFKRDYFLMIWTFPIFIFLQLIGYVSSFHLISLL
                     PPLCIAGGRLIAEIGNRSANQSVRNVLPFIRISAIGLFGLISTSMIISIDMNSTYYQA
                     LAFLVQKLPDAKTTNSSNSNIQSAGERITVSGNPEYFWIPEFIFDKQFVGSSYYSNVP
                     FKTDKYIMIIDKGFLNILDGNSRSRERLTLALNATQSLSVFQQNMTGDLDNSKYPYTG
                     LKLTPEFKYIDIRSNY"
     gene            1183..>2002
                     /locus_tag="VFI64_05230"
     CDS             1183..>2002
                     /locus_tag="VFI64_05230"
                     /inference="COORDINATES: protein motif:HMM:NF020489.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004829 - threonine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonyl-tRNA synthetase editing
                     domain-containing protein"
                     /protein_id="HET7242726.1"
                     /translation="MRMLFLHADFIEYEPISKEIQLAEEGIPIAKKRMDDLIVVLTAV
                     ESEDDENTASDSSTEIRKYGDLVKCDQVLIYPYAHLSSNLASPKVALQILQSLEMGVR
                     KFFPIVARAPFGWTKSFNIKVKGHPLAENARTITGQFKLSKSPDKSGNDESTALRAEE
                     TVRSSWHILEVGGHLVPFAEYSFNKDQSNLKTLADYEFSKKRVVDEIPPHVKLMKKLG
                     IADYEPASDSGNMRFYPKGKLMKSLLESHISRRISEYGGMEVETPIMYDSKHPTL"
BASE COUNT          619 a          404 c          374 g          605 t
ORIGIN      
        1 ttgacttcaa taatgctagt catttattca gctgacatga agcagcacaa gaagatagcc
       61 ataattgttt ctggcatatt tatgggactg gccattttca cgaaggttcc tgcattcact
      121 acaattccat tggttgtgtt ccttacatat tctaacacca ggcgtcttcg atacgtcctg
      181 ttgtggataa taccaactat attgattcca gccctttggc ccatacatgc tgcggcagta
      241 ggagacttga ataattgggt agatggaatt ttatatcaga cagatcgaga gagtcgtcct
      301 ctaataaatg ccttgaacac attgttccaa gttgatccta tatttttcgt gattggcatt
      361 ggcggaatca tatactcggt atttaaacga gactattttc tcatgatttg gacatttccc
      421 atttttatct tccttcaatt gattggttat gtttcatcat tccacctcat ttctctcctt
      481 cctcctctct gcatagcagg aggacgcttg attgcagaaa tcggaaatcg gtcggcaaat
      541 caaagtgtcc gtaatgtgtt accatttatc aggatttctg caattggtct ctttggattg
      601 atcagcacaa gcatgataat atcaattgat atgaattcga cctattatca agctctggca
      661 ttcctagttc aaaaactccc agatgccaaa actactaatt ccagtaactc taatattcag
      721 tctgcaggcg aaaggataac tgtcagcggt aacccagagt atttttggat tccagaattt
      781 atttttgata aacaatttgt agggagtagt tactacagta atgtcccctt caagactgac
      841 aagtacataa tgatcattga caagggcttc ctaaacatat tagacggcaa ctctcgttca
      901 cgtgaaaggt tgactcttgc actcaacgct acacaaagcc tttccgtgtt ccaacagaac
      961 atgaccggtg atcttgacaa ttcaaagtat ccttatacag gtcttaagct tactcctgaa
     1021 ttcaagtaca tagacatacg atcaaactat taattactaa actaaggtct gatcaatggg
     1081 ttttatgggc ccgtatattt tagtttccat gaattaatta attctcctta gattttccaa
     1141 aagtatttaa tttgtgcaaa ccccatagtt gactgaccga taatgcgaat gcttttcctc
     1201 catgccgatt ttatcgaata tgaacccatt tctaaagaaa tccagttagc tgaagaggga
     1261 attcctatcg ctaaaaaaag gatggatgat ctgatagtcg tactaactgc tgtcgagagt
     1321 gaagatgatg aaaatacggc atcagattca tctaccgaaa taagaaaata tggagacctt
     1381 gtaaagtgcg atcaagtctt aatctatccg tatgcacatc taagttcgaa tttggcttca
     1441 cccaaggtag ctctacaaat tctccaatct ctagaaatgg gggttcgaaa attttttcca
     1501 attgtagcaa gagcaccatt tggttggacc aagtctttta acattaaggt caaaggtcat
     1561 ccattggccg aaaatgctag aacaataacg ggccaattca aactgtcaaa aagccctgac
     1621 aagtcaggca atgatgaatc aactgcacta agggcggaag aaactgtcag atcttcttgg
     1681 catattctag aagtaggagg ccatctagtc ccttttgcag aatattcctt taataaggat
     1741 cagtcgaatc tcaaaacctt ggcagactat gaattctcaa aaaagagagt agttgatgaa
     1801 atccctcctc acgtcaaatt gatgaaaaaa ttaggaattg cggactatga acctgcatct
     1861 gatagcggca atatgagatt ctatcccaaa ggaaaattga tgaagtctct attagagtca
     1921 cacattagtc gcaggatatc agaatatgga ggtatggagg tagaaacgcc cattatgtat
     1981 gattctaaac atcccacatt ac
//
LOCUS       DASSIK010000279         4922 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1451391, whole genome shotgun sequence.
ACCESSION   DASSIK010000279 DASSIK010000000
VERSION     DASSIK010000279.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4922)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4922)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4922
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1451391"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            280..1149
                     /locus_tag="VFI64_05235"
     CDS             280..1149
                     /locus_tag="VFI64_05235"
                     /inference="COORDINATES: protein motif:HMM:NF023568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HET7242727.1"
                     /translation="MEERITFTTSNGQLSALHFSPPVPSRYKILCLHGFCCDSRIFRY
                     IGTKMSEKGFDIYALDLFGHGKSDSKKGDPNFFDTLKSIDELIEQFRSVDSSVYILGH
                     SLGCTYALWYNLHYRDKVSGIILLAPFIWMKGLKNKGEAVPGFFKFLGLLFRRILTPS
                     KLISATKVVRDSILKTEEIQFMMRDPEINYYYSYRYIVDVIGFKNTKVKLLSSITKPT
                     LILHGKKDSNVYSELSVGFYDLLKSDKKQLKLFDCDHWFYHSIFFNQNDQRYTESDRR
                     QVVDSIVSWLESL"
     gene            complement(1194..1694)
                     /locus_tag="VFI64_05240"
     CDS             complement(1194..1694)
                     /locus_tag="VFI64_05240"
                     /inference="COORDINATES: protein motif:HMM:NF017081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MASE1 domain-containing protein"
                     /protein_id="HET7242728.1"
                     /translation="MESVQLQDKIDSRLWMLLDLFEKEVKPYDMLSSIFFLLTPVGVI
                     LSTLSPVPIMLYVFHINPFAAMISGGIVFWIIGGIVATLVVTRVAILFFDYRKHQISK
                     LKYKPLTGVCMCDLSQLRSHLSKMEKTNFPAERLKHKRLVDYYRERIGWNGERLDTGR
                     LVQDLL"
     gene            2042..2257
                     /locus_tag="VFI64_05245"
     CDS             2042..2257
                     /locus_tag="VFI64_05245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242729.1"
                     /translation="MNLTPDSLAKSIWVSSGLAMIFALPPLVIFLGIYLHTTNLIAGV
                     IVGFGIHFVLLGLSPRISERLSSFLED"
     gene            2893..3057
                     /locus_tag="VFI64_05250"
     CDS             2893..3057
                     /locus_tag="VFI64_05250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242730.1"
                     /translation="MIETKNVSEEKKDIVKNLYVSGISEEFIAMQIDLEIPVVIAILK
                     ELGVYKLSEG"
     gene            3298..4335
                     /locus_tag="VFI64_05255"
     CDS             3298..4335
                     /locus_tag="VFI64_05255"
                     /inference="COORDINATES: protein motif:HMM:NF014094.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATPase subunit"
                     /protein_id="HET7242731.1"
                     /translation="MPSRIFGTVMAHGMRGRMLSKTELQTLAESRDVDELVTRIKNTV
                     YLDALAKVSKPYTAEKIEGALREYQVNLHSKMLSVTGGSSILSAYFLKYITWNLKIVL
                     KGKALGKSYEELVPKVNLRAEELLGRRDIIVKALVSKNLDEAIGALAGSDVAEDAAKA
                     AAIYKDKLDLRVFDTYLDRTFFVHLGRGMNAESQSLDVKNIVSTDIDSYNVLAVLRGK
                     FWGLAPNDISDLVVTTTSKVTRDTLMKMINTEKISEAIGELGNTVYKEIIPQTFTSDI
                     DAITQLENSFEAVELKRVVSAFRSMFNLGIMVAALKLLMIEVRNLSAIASGVEQKVPT
                     EAIVSRLIIPT"
     gene            complement(4434..>4922)
                     /locus_tag="VFI64_05260"
     CDS             complement(4434..>4922)
                     /locus_tag="VFI64_05260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242732.1"
                     /translation="WLTFIFGDWVTVDLVAKAAPPIIIATVAVMIYGAKKEEEEAAKH
                     GNDEGGGIMGIVIEVILVRIIEVLSNVISYTRIGIMLLVHSALLVTVNTSYLHGGGIA
                     VLIGGNIGIMLIEGLIVYIQTIRLHLYEWFPKWYVGEGTEFKKLVPKMLYSNIIWKDG
                     RS"
BASE COUNT         1549 a          901 c          915 g         1557 t
ORIGIN      
        1 ataccaacct aattattaca ctattctgtg ggatcatgac tctcttcatt gcgatgggat
       61 taggttacaa agtagctaaa aaacttgcga cgatttagaa ctcagatgtc gatgctgggc
      121 ctttttcctg tatatcaatt gaagtgtact tcatgagctt tattgtttcg agtccaataa
      181 taaattgaca aggtaaataa atttggactt tgatcttttc taattaaaca ttataagttc
      241 aaaaatgaat acaggatcaa agagtgcggc acagggacaa tggaagagag gataactttt
      301 acaactagca atggacaatt aagtgcgtta catttttcgc ctccagttcc ttccaggtac
      361 aaaattcttt gtcttcatgg tttttgttgc gattccagaa tattcaggta tattggtaca
      421 aaaatgtccg aaaaaggatt tgatatttat gcattagatc tattcggtca tggaaaatct
      481 gatagtaaga aaggagaccc aaattttttt gataccttga aaagtataga cgaattaatt
      541 gaacagttca ggagcgtcga ttcttctgtc tatatattgg gtcatagtct aggttgcacg
      601 tatgcattgt ggtacaattt acattatcgt gataaggttt ctggaattat tctattggct
      661 ccattcattt ggatgaaagg actgaaaaat aaaggggagg ctgtacctgg attctttaag
      721 tttctcggtc ttctgttcag gcgtattttg actccatcta aattgatctc tgcgacgaaa
      781 gttgtacggg attctattct gaaaactgag gagattcagt ttatgatgcg agatcccgaa
      841 ataaactact actattcata taggtatatc gtagatgtta ttggattcaa gaatacaaaa
      901 gtaaaactcc tatcaagtat cactaaaccc actctcattc tacatggcaa gaaggattcg
      961 aatgtctatt ccgaattatc tgtcggtttt tatgacttat tgaaaagcga taaaaaacag
     1021 ttgaaattat ttgattgtga tcattggttt taccattcca ttttcttcaa tcaaaacgat
     1081 caaagatata ctgaatcaga ccggcgccaa gttgtggact ccatagtaag ttggttagag
     1141 agcctctaag atttaacctg cctaaattat gaatgtcgta ctattggtag tcttcagagt
     1201 aaatcttgta ccagccttcc tgtatccaat ctttcaccat tccatccaat acgttctcgg
     1261 taataatcca ctaaccgctt atgttttaat cgctccgcag ggaaattggt tttttccatc
     1321 ttacttaaat gagaacgcag ttgactaaga tcgcacatac atactcctgt taacggtttg
     1381 tatttcagtt tagagatttg gtgtttccga tagtcaaaaa aaagtatcgc aaccctcgtc
     1441 actactaaag ttgccacgat tccaccaata atccagaaaa cgataccgcc tgaaatcatc
     1501 gcagcaaatg gattaatgtg gaaaacgtaa agcataatcg gaactgggga cagcgttgac
     1561 aaaattaccc ctaccggagt aagtaagaaa aatatcgatg acagcatgtc atacggtttc
     1621 acctctttct caaataaatc gagcagcatc cacaatcggg aatctatttt atcttgtaac
     1681 tgaactgatt ccataaacta tgataagctt ttagtaatta ttaacattat ctaacagaat
     1741 tgtacatatt ccaaatcact atttttccgc tcgtcattct tagattatct acccaattac
     1801 tacacaataa ttttattatt tttcatgtca gttagataaa attattaaat attcatctta
     1861 aaaaaataac gatgaccatt catattgttg tctaactatt ctacaatata atatttacat
     1921 ttttttacga tttatacgca cagatttata atgtatatat ataaatttga catgagagga
     1981 acaaaatatt gaaagaatgt atatgttaaa cgatggatta acctttccgc gacggaagac
     2041 tatgaattta acgccagact cacttgcaaa gtcgatctgg gtgagctcag gcctcgctat
     2101 gatatttgca ttgcctcctt tggtgatatt ccttggaatt tatttgcaca ccactaattt
     2161 gatcgctggt gtgatcgtag gatttggtat ccactttgta ttgttgggct tatctcctag
     2221 aatttctgaa cgactttctt cattcttgga agactaagat tctaacgaat tgtattatcg
     2281 gttacactca tcgacaaact gggttataga tcggtttgcc acgtatgtca atctccacag
     2341 caattagtaa aatgatctaa atttgtaaat tgtggtttct aattatcgat tctaaatgtt
     2401 ggtacagtgc acacaccaga gtgggaacta aaagatttcc acaataatgg atttcaatat
     2461 actatatttg tgtctataaa tccgctctgg cgaattatca ttagattaac ttgatccgcc
     2521 taatgttcat atgttctttt ttcacttctt cctggattga gcaattttaa gtagttacca
     2581 aggaataatg gctcctgctc tattgatgac aggtatatac attattgcta caaaatttgt
     2641 ataggatgaa ccacttttaa tcctcaatgc ctgtctagtt cgtaatatta ccgcttattg
     2701 gcaagtcctt cgaacatgtt actctccaca gttcccttgg tcagaacaaa aaatgttaag
     2761 ttttcctgga aatggctaag ttaatgccag ataagcatat taaattacgg accattaatt
     2821 tgattctcaa gtaggtaaat tcgagattta cttagatatt tataccgata tccctagtca
     2881 tcgttacaat agatgataga gactaaaaat gtatcagagg aaaagaaaga catagttaag
     2941 aatctctatg tttcgggtat ctccgaggaa ttcattgcaa tgcaaattga tttggaaatt
     3001 cccgtagtta tagccatcct gaaggaactt ggcgtttata aattgtccga aggatgaatt
     3061 ctaaggggct gcccacaagt attcatctaa tccttaagac taatatttga cctgctacaa
     3121 gttggaaatc tgtttagatt gcgtatactg aatattgatt atcatgaaca acttgatgac
     3181 atgtgccatt gattctcacg aacttttcat atatttggat actaaaaatt aaaattaacg
     3241 cagagttaat aattaggagg tcaggatgtg tagttattaa caatgagtaa aacaagtatg
     3301 cctagtagaa ttttcggtac cgttatggca catggcatgc gaggacgaat gctttctaag
     3361 acggagcttc agacactcgc agagtcaaga gatgtagacg aattagttac gagaataaag
     3421 aatactgtat atctcgatgc cttagcgaaa gtatcaaagc cgtacaccgc tgaaaagatt
     3481 gagggagctt taagagaata tcaggtcaat ttacactcca agatgctgag tgttactggt
     3541 ggatcatcga tccttagtgc atattttcta aagtatatta cttggaactt gaaaatagtt
     3601 ctgaaaggta aagctctagg caagtcatac gaagaactcg taccgaaggt aaatttgaga
     3661 gctgaagagt tacttggcag acgagatatt atcgtcaagg cgctagtctc aaagaattta
     3721 gacgaagcga ttggtgcatt agctggaagt gacgttgccg aagacgccgc aaaggcagcg
     3781 gcaatatata aggacaagct tgatcttaga gtgtttgaca cttatcttga tcgcacattc
     3841 tttgttcatt taggaagagg gatgaatgcc gagtcccagt ccttagacgt aaaaaatatt
     3901 gtgtccaccg atatcgattc ctataacgta cttgctgtcc tccgaggtaa attttggggc
     3961 ttggcaccta acgatatcag cgacctagtg gtcactacta catctaaggt tacaagggat
     4021 actctaatga agatgatcaa tacagaaaaa atctctgaag ctataggaga actcggtaat
     4081 accgtttata aagaaattat cccacaaact tttaccagtg acatagatgc gatcacgcag
     4141 cttgaaaata gctttgaagc cgtggaacta aaaagagtgg ttagcgcatt tagatcgatg
     4201 ttcaatctgg ggataatggt tgcagcgcta aaactattga tgattgaagt tagaaacttg
     4261 tcagctatag cttctggagt cgaacaaaaa gttcctacag aggcaatagt atcaagatta
     4321 attataccaa cttaaaagta ctcaatgcct tgaatggcat cattgattac tgtgcttgat
     4381 aggagtgcta ggagcgacgt tgatactttg tttattttat gtatcttgtg tccttaggag
     4441 cgcccatcct tccagataat atttgagtag agcatcttag gaacgagctt cttgaattca
     4501 gttccttctc ccacatacca tttgggaaac cattcgtata ggtgcaatct gatggtctga
     4561 atatacacaa tcaatccctc gatcagcatt attcctatat ttccaccaat caaaactgct
     4621 atacccccac catgtaaata tgacgtgttt acggttacga gtaacgctga gtgtactaag
     4681 agcatgattc ctatcctagt atagctaatc acatttgaga gcacctcaat aattctcaca
     4741 agaatgactt ctatgacaat tcccatgatg ccaccccctt catcattacc gtgtttagca
     4801 gcctcttcct cttctttctt tgcaccatat atcattacag ctactgtagc tataattatt
     4861 ggaggagccg cctttgcaac tagatcaaca gtaacccagt cgccaaatat gaaagtgagc
     4921 ca
//
LOCUS       DASSIK010000280         3112 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1060404, whole genome shotgun sequence.
ACCESSION   DASSIK010000280 DASSIK010000000
VERSION     DASSIK010000280.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3112)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3112)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3112
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1060404"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1504
                     /gene="ilvB"
                     /locus_tag="VFI64_05265"
     CDS             <1..1504
                     /gene="ilvB"
                     /locus_tag="VFI64_05265"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005948 - acetolactate synthase complex
                     [Evidence IEA];
                     GO_function: GO:0003984 - acetolactate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009099 - valine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="biosynthetic-type acetolactate synthase large
                     subunit"
                     /protein_id="HET7242733.1"
                     /translation="VKRKAGVCFATSGPGATNLITGIATAYADSSPMIAVTGQVPLGM
                     IGKDAFQETDIIGVANPCTKYAFQPRTAVEIPEMVKKSFYIAESGRPGPVLIDIPKDV
                     QQSTADINFPDLIKVRGYNPIIDPDLANVGKAVELLLAAQKPIIMAGGGVILSGAFSE
                     LQALAESVMAPVVTTFKGKGAFPENHPLAMGPIGMHGHPEANRIILEADLIIAVGARF
                     SDRSVGRFDEFGKGMNIIHMDIDPAEIGKNKSVDLAIVGDVKSSLRTMVKMISKKVTK
                     RGIENEWLKRRKELIDYYSETLKDYPREITAKKSLKKLRELLPPESIVTTEVGQCQMW
                     ASLHFDVISPGTFFSSTGLGTMGFGFPASIGAKAARPDVSVVDIAGDGSFNMTENSLA
                     VSVIEKLPVIVFLLNNYMLGMVAQWQRTFYDRRYMGVEQHNCPDYVKIAEAYGANGIR
                     VETMSELEKAINSALRSELPTVIDIPIDPDEDVFPFVAPGTGLKDMITGA"
     gene            1511..2017
                     /gene="ilvN"
                     /locus_tag="VFI64_05270"
     CDS             1511..2017
                     /gene="ilvN"
                     /locus_tag="VFI64_05270"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990610 - acetolactate synthase regulator
                     activity [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HET7242734.1"
                     /translation="MSIIEPRSKHLHIISSLVENKPGVLFRITNLFRARNFNIESITV
                     GTTEQPDLSRMTITTKIDEYTLDQLIKQLRKLIDVVEVKQLDIDNTVYRELALIKMQA
                     TDSATKMEITNYASVFRANILDIGKKSITVEITGTPDKIDAFKNLIEHYGIVEMARTG
                     VSALLRGN"
     gene            2019..>3112
                     /locus_tag="VFI64_05275"
     CDS             2019..>3112
                     /locus_tag="VFI64_05275"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003852 - 2-isopropylmalate synthase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HET7242735.1"
                     /translation="MNEDKPKVRIFDTTLRDGEQTPGVSITPELKLKIATKLDELGVD
                     AIEAGFPVVSEGEMAGIKSIVKQGLKCEVCALARTVQSDIDAAIKCEVNYVHTFIATS
                     DIHMMYKLKMSKEQVLERAVWAVQYAKDHGLKVEFSAEDATRSSREFLLKVFSAVSNV
                     HADRIDIPDTVGYATPEYIKSLVKDVVSATNIPVSMHCHDDFGLAVANSIAGILSGAS
                     CAHVTINGVGERAGNASLEEFVMAMQCLYGRKHNINTQLLYDISKFVSNTLGVIVQPN
                     KAIIGENAFGHESGIHTHGIISNPLTYEPISPEIVGRKRWLQAGKHAGAHGIRAMLAE
                     FGIDPTEQQLHTIVERQKSIADKGKSITTS"
BASE COUNT         1006 a          587 c          729 g          790 t
ORIGIN      
        1 cgtcaagcga aaagctggag tttgctttgc cacgtctgga cccggagcta cgaatcttat
       61 cacgggaatc gcaacagcct atgcagactc ttccccaatg atcgcggtca cgggccaagt
      121 tcccttagga atgattggaa aagacgcctt ccaagaaact gacattatcg gagtcgcaaa
      181 tccctgcaca aaatatgctt tccaacccag aactgccgta gaaattcccg agatggtaaa
      241 aaagtcgttt tatattgctg aaagcggacg gccaggacca gtcttgattg atattccaaa
      301 agatgttcaa caaagcactg ctgatatcaa ttttccagac ctgataaagg ttagagggta
      361 taacccaatc atagaccctg acttggccaa cgtgggaaaa gcagttgaat tgttactcgc
      421 ggcacaaaaa ccaatcatta tggcaggagg tggagttatt ctatcaggag ctttttcaga
      481 attgcaagca ctagcggagt cagttatggc accagtggta acgactttta agggtaaggg
      541 agcatttcca gaaaatcatc cattggcaat gggtccaatt ggaatgcatg gacaccccga
      601 agcaaatagg ataatacttg aggcagacct tatcattgct gtcggcgcca gattttccga
      661 tagatccgtg ggaagattcg atgaatttgg gaaaggaatg aatataatcc atatggatat
      721 tgacccagca gagataggca agaacaaatc agttgactta gctattgtag gagatgtgaa
      781 atcctccttg cgcactatgg taaaaatgat atcaaagaaa gtgacaaaaa ggggaattga
      841 gaatgaatgg ttgaagagaa ggaaggaact tatagactac tattctgaaa cacttaaaga
      901 ttatcccagg gaaattactg cgaagaaatc attaaaaaaa ttacgcgagc tattgcctcc
      961 tgaatcaatt gttactactg aagtgggaca atgccagatg tgggcttcgt tacattttga
     1021 cgttatttct cctgggacat ttttcagttc aacaggactg ggaacaatgg ggtttggctt
     1081 tcctgcatct ataggcgcca aggccgctag gccagacgtt tcggtcgtag acattgctgg
     1141 cgatggttcc tttaatatga ctgaaaattc cttggcagta tcggttatcg aaaaacttcc
     1201 tgttatagtg tttttgctta ataattacat gttagggatg gtggctcagt ggcagagaac
     1261 attctatgat cggcgatata tgggtgtaga acaacataat tgtcctgact atgtgaaaat
     1321 tgctgaggca tatggtgcaa atgggatcag ggtagaaaca atgagtgaat tggagaaggc
     1381 tataaactcg gcgcttaggt ccgaattgcc tactgtgatc gatattccca ttgatcccga
     1441 tgaagatgtc tttccatttg ttgctccggg aacaggtctg aaagatatga taactggagc
     1501 atagcaaaaa atgtcaataa ttgaaccacg ttcaaaacat cttcatataa tatcctctct
     1561 agttgagaac aagccgggag tattatttag aattacaaat ctctttaggg cacgtaattt
     1621 caatattgaa agcataacag taggaactac agagcaaccc gatctatcca ggatgacaat
     1681 caccaccaag atagacgagt acactttaga tcaacttata aaacaactac gaaagttgat
     1741 agacgtcgtt gaagtaaaac aacttgatat tgataatact gtctatcggg aacttgcgtt
     1801 aataaaaatg caagcaactg actctgctac aaaaatggag ataacaaatt atgcgtcagt
     1861 tttcagggca aacattcttg atattggaaa gaaatctatc acagtagaaa taactgggac
     1921 accggataag atagatgcat ttaagaatct aattgagcac tacggtattg tggagatggc
     1981 acgcacgggc gtgtcagctc tccttagagg gaactaattt gaacgaagac aaaccaaaag
     2041 tcagaatatt tgacacaaca ttgagggatg gtgaacaaac gcctggcgta tccattacgc
     2101 cagaactgaa actgaaaatc gccaccaaac ttgatgagct aggggttgat gcgatcgaag
     2161 caggatttcc tgttgtttca gagggtgaaa tggcagggat caaaagtata gtgaagcagg
     2221 gattgaagtg tgaggtctgc gcacttgccc gcacggtgca atcggatatt gatgcagcaa
     2281 taaaatgtga agtgaattat gtgcatacat tcattgcgac atccgacatc cacatgatgt
     2341 acaaattaaa gatgtccaaa gagcaggttt tggaacgggc tgtatgggct gtacaatatg
     2401 caaaagacca tggtttaaaa gtagaatttt ctgcagaaga tgcaactcgc tccagtagag
     2461 aattcttgct taaagtattc agcgcagttt caaatgtcca tgcagaccga atagatatcc
     2521 cagacacagt cggatatgct actcccgagt acattaaatc gcttgtaaaa gatgtagtat
     2581 cggcgacgaa tattcctgtg agcatgcatt gtcacgatga ctttggttta gcagttgcaa
     2641 attcaattgc cggaatcctt tcgggtgcga gctgtgctca cgtgacaatt aatggagtgg
     2701 gggaaagagc aggcaatgct tcactggaag aattcgttat ggccatgcaa tgcctgtacg
     2761 gaagaaagca caacatcaat actcagttat tgtatgatat atcgaaattt gtctcgaaca
     2821 cactgggtgt gattgttcag ccaaacaagg caatcatcgg cgaaaatgct tttggacacg
     2881 aatctggaat acacacacat gggataatca gtaatccgct aacgtatgaa cctattagtc
     2941 cagaaatcgt tggaagaaaa agatggttac aagctggaaa acacgccggt gcccacggta
     3001 tccgggcaat gttggctgaa tttggaatag atcctaccga acaacaatta catacgattg
     3061 tagaaagaca aaagagtatt gcagacaagg gcaagtcgat tacgacatcg ga
//
LOCUS       DASSIK010000281         2160 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_755785, whole genome shotgun sequence.
ACCESSION   DASSIK010000281 DASSIK010000000
VERSION     DASSIK010000281.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2160)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2160)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2160
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_755785"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            313..413
                     /locus_tag="VFI64_05280"
     tRNA            join(313..327,353..413)
                     /locus_tag="VFI64_05280"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:374..376,aa:Glu,seq:ttc)
     gene            1128..2003
                     /locus_tag="VFI64_05285"
     CDS             1128..2003
                     /locus_tag="VFI64_05285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HET7242736.1"
                     /translation="MNRRNAESNPLTEQFSSYLSRIDDSLARELDIYSWSEFYAPLRY
                     ASDGGKRIRPLILVLSSESVNADKKEGIDDNKEEIFLASSAIELLHTESVIHDDIIDE
                     ENLRRGKPSFHVKYGYNSSILTADFVLGIILNIGSKIDSPKISAELSKAATKMSEGEM
                     MEIMLAKDPRLKEDDYIKVVEHKTASLFEAAAKIGAILGFGLEDEIRAMGSFGHLLGI
                     AYQIHDDLLDWNNEDRLFNMLVKNNEQSVEFVAKMEKLFLSYSNKAKNELRKIADSVS
                     KKHLEHLTDLTYIQV"
BASE COUNT          692 a          426 c          410 g          632 t
ORIGIN      
        1 agtcctgaat agctggcaat gttccctatc attgaagatt atagattaga acaacctcat
       61 gactagtcta gtggaagaca cccattagag aatgtttgac gatttgggcg tgttaatcaa
      121 cttttttgta ttttggaact atcatattcc tagtccgcat atcagtgttc catcaatact
      181 tctcaaacca atacctcgtg aatcagattt tgagtcacgc gtctgtggat gacaatagtg
      241 attgtgaaat ttctcatttt tctcgcttca ggaaaagatt ttatgaccaa gtatttgaat
      301 tacttgacgg ttgctccggt ggtgtagtag ttgattaatt ccagctgcac aatacggtca
      361 agcattgtgg cctttcgagt cgcagatccc gggttcaaat cccggccgga gcactacaca
      421 acagtagtat aataccgatc gacacacacc atttccaaat atccaccgtc tccaagacgt
      481 ttaccaccat cttcaaccta ttcgataatc tcccgaggag atttctctct tattatttcg
      541 aacttgacct ccaatcgatg agcagaagcc gttgtatgca ggagtgaact ttcgattata
      601 gtccctatat cgattcatgt tcaaactctt tcgacgtctt gttcaagaag tattttgatg
      661 aagaaagttg gggtacatga ttccacaagt acaaatcctt gcggtcccca tgaagcgttc
      721 cgtaaatggt atgacgaact tctactgtta tgggttatct cccgtgtctt tctacaaaat
      781 atctaccgcc tacccaaata ccagtttggg agcgaatcca atcaacttct catttagaag
      841 taattcgatc aatatctgaa atggcgtgaa ataagtgtac gatgtgatac tgactgtaag
      901 aacaaccggc gaaaacacat gactccccgg cagattaatg atcagataga caagctagca
      961 aagtcaacgc gttaaatgga atttgaattt gttaaataaa ttggaatgcg aacgcatttt
     1021 tggaattaag atggcaaagt ataaattctc aaattaaacg agaactcaac tgctctaaaa
     1081 agaataaata tccagaccaa ttcactattg tgggctagac ttcatctttg aatcgaagaa
     1141 atgctgaatc aaatccgctt acagaacagt ttagctccta tttatcaaga atagacgact
     1201 ctttagctcg tgagctagat atttactctt ggtctgaatt ttacgcacct cttcgatatg
     1261 cttctgatgg tggcaagcgc ataagaccac taatacttgt tctctcatca gaatcagtca
     1321 atgctgataa aaaagaagga attgatgaca ataaagagga gatttttttg gcctcttcgg
     1381 cgatcgaatt attacataca gagtctgtaa ttcatgacga cataatagac gaagaaaacc
     1441 taaggagggg aaaaccatca tttcatgtca agtatggata caatagtagt attcttactg
     1501 ctgactttgt cctcggcatt atactcaaca taggctcaaa aatagatagt cccaagatat
     1561 ctgccgaact atcaaaagcc gcaaccaaaa tgagcgaggg agaaatgatg gagataatgt
     1621 tagcaaagga cccaaggcta aaggaagacg attacatcaa agtggttgaa cataagactg
     1681 catcgctttt cgaagctgca gcgaaaattg gggcaatctt gggatttggc cttgaagatg
     1741 agatccgtgc catgggaagt tttggtcatc ttttgggaat tgcataccaa atccatgatg
     1801 atctattgga ttggaataat gaagatagac tgtttaatat gcttgtaaaa aacaatgaac
     1861 aatcagtaga attcgttgcg aagatggaaa agttatttct ttcttattcc aacaaggcaa
     1921 aaaatgaact aagaaagatt gcagattccg tctcaaagaa acacctagaa catttgactg
     1981 acttgacata tattcaggtc taaaattaag ataaaatgaa cttacacttt ccagtatatt
     2041 acttctaatg caaatacccc cccaaaaact tcgctgttcc gtaaacccgt aaacttcctg
     2101 aattgagatt cttcctgata ttcgtattaa tttaggatgc tttatttcct atccatggtc
//
LOCUS       DASSIK010000282         3053 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1060492, whole genome shotgun sequence.
ACCESSION   DASSIK010000282 DASSIK010000000
VERSION     DASSIK010000282.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3053)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3053)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3053
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1060492"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(296..568)
                     /locus_tag="VFI64_05290"
     CDS             complement(296..568)
                     /locus_tag="VFI64_05290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HET7242737.1"
                     /translation="MKYRSRTDITGLILEAANGGATKTKIMYKAFLSFAQLKEYLAML
                     TQNGLISYEDSQKYRTTEKGLRMLQIYNQINEELVISGNGDRKSTD"
     gene            complement(718..1140)
                     /locus_tag="VFI64_05295"
     CDS             complement(718..1140)
                     /locus_tag="VFI64_05295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242738.1"
                     /translation="MKSLAQSKYQLIAILNGLLMGVICMTLTNYNSSFAITPTPVPVL
                     SNSTITMNITDNLNSITENVSSSIKSTIEKVMSDTLNGMMEDTIGLLLKNTTQSVTND
                     NNSTGVKFEPKIPSGIDITQMPMENKLNPSYEREVTVS"
     gene            1482..1820
                     /locus_tag="VFI64_05300"
     CDS             1482..1820
                     /locus_tag="VFI64_05300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242739.1"
                     /translation="MAAVYSASSVLIFVIGLVVSTIVIYFVSRFVGTKRGLKVAFFTA
                     IIGSLIYATVYFLVGNGLLAAVLGGIAWLLALKGLYKIGWIHALIMAIIIWIITSLVG
                     VLLPTAPGPV"
     gene            2741..>3053
                     /locus_tag="VFI64_05305"
     CDS             2741..>3053
                     /locus_tag="VFI64_05305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242740.1"
                     /translation="MTKPKCSTALNVNLVLITLVTLVYSLSVCGFTLTFAANSENAIE
                     QLKADPSISTHAVDKFGVEMLYPTKHAGQEWYMNMENPTSDQRFNPQDHITRNHDGSW
                     KM"
BASE COUNT          875 a          576 c          563 g         1039 t
ORIGIN      
        1 attattaatc ctctatagtt ttccgttgag aataatcata gcagtagcat ctagtggaaa
       61 ggctgacggt tctggagaac ggtatcgtat agctctttcc attcaatatc atttttaaca
      121 cataccaaat aacttatgtc aacatcttat tcgtaatatt aaacttgatt aaatagtatt
      181 tccttgctac ttgctgcaag cgttcctaaa acataatttg atttattgac attacaccat
      241 attatacatt ccatttcagg atccattgca aaaaggaaat ctcagtacct gaatttcaat
      301 ctgtagattt tctgtcccca ttgcccgaga taactagttc ctcattgatt tgattataaa
      361 tctgtagcat tctcaaaccc ttttcggttg tcctgtattt ttgactatct tcatatgata
      421 ttaatccgtt ctgtgttaac atggccaaat attctttcaa ctgtgcgaat gataggaacg
      481 ctttgtacat gatttttgtc ttagtagctc caccgttcgc agcttctaga atcaatccgg
      541 ttatatcagt tctacttctg tatttcattg gaatcattac ctgctaacca ataggatatt
      601 tatgagtgat cttcatttct tccttaatct gtatccatta ttacctaaaa atgatactaa
      661 gaagatttag ttttcatatt tctgcgcatt ggtatagcta gatcttcatg gcacatgtca
      721 agatactgtg acttcgcgct cgtatgaagg attcaatttg ttttccatag gcatttgagt
      781 aatatctatg cctgaaggga ttttgggttc aaatttcact cctgttgaat tattatcatt
      841 ggtaactgat tgggtcgtat ttttgagaag taagcctatc gtatcttcca tcataccatt
      901 caaagtgtcc gacattactt tttcaatagt gctttttatt gaagatgaga cattttctgt
      961 tattgaattg agattgtcag ttatgttcat tgttattgtg ctattagaaa ggacaggaac
     1021 aggagtagga gtaatagcaa agctcgaatt gtaattagtc aaggtcatac aaattactcc
     1081 cataagcaaa ccgtttagga ttgcgatcaa ctggtatttt gactgtgcaa gagatttcat
     1141 gtagtaagct ccttatcctt ttgataaata aaattggcta ctctttacca gaagaagagg
     1201 catttgatat taaacatagt atagtagtac ggtacaaaat attcttgttt acaattcccg
     1261 tcttaattct taatctaaca ataccgtatg atgagcggac caactgatct agttaattcc
     1321 ttaattatta tcgggctcag tttgggtcat acgtaacatg tcaaaaggcg cacgggagat
     1381 ggacaaactg atctgtctca aactttattg aacctgaaat ccgatttttc acaatctgaa
     1441 gactagtatg atatataagg aataattaat cgataagctc aatggcagcg gtatattctg
     1501 cttcttccgt tttgatcttt gtgattggct tggtcgtttc tacgatagta atatactttg
     1561 tttctcgctt cgtaggtact aaaaggggtt taaaggtagc attttttacc gcaataattg
     1621 gctcattaat ttatgctact gtctattttc ttgtggggaa cggtttgctt gctgcggtct
     1681 tgggaggaat agcgtggctt ttagcattaa aaggtctgta caaaatcgga tggattcacg
     1741 cattgataat ggcaattatc atttggatta ttacttctct tgttggagtc ttgttaccca
     1801 ctgccccagg accagtatga ttctcattgc cagatagctc gttattttga ctgccatctg
     1861 aaagagcaaa ttacacggtt gataaccaga taagaatagt taataatcta tagtccggca
     1921 gaccaacttg agtagaggtt ggccttccat taggtcacca cttgcgttct cagtgatgtg
     1981 tttttagaga cctggaagga ttactgcata atggacactt atcttggtaa aagggcatcc
     2041 tacactcaat tgccttccac gcatgtggca ctccgcatgt agtgcgttga tgtcgacata
     2101 aactaatatt gtgcttgaat attgtcattg tatccaagta ccgcgtcgaa ctcgtgatat
     2161 tactttcact aagcaccatc tctgaaaact aattggatat aattgtaaag tttcaacaaa
     2221 acatgccatg ttggtgaggg cacttaaaat gactggggga tctcctcgcg attttgttca
     2281 cccagcatgg atggacacgg agtttactat ccatgtttaa gaagaccttg cctggtacat
     2341 tcttttttaa ttcaagcaaa ttcgtacaag tagcgtattg caagatctaa gtttgagtaa
     2401 gcttattttc gacttgtgtt tttcccaaag acctcgccaa gattccttgt gccgtcgact
     2461 caagtagtcc ccaaatgcag gagatcagta agtactccct tattgtccgt tttcaggaca
     2521 aaccttaaag agttcccttg gtcgacttat atttcagtac cacaatgttt gaatgttgtc
     2581 tcttgaatac ttgccgctct gaaaaatcgg accacaactt ggttgtagtg cattgcagta
     2641 gtggaggttg tactgacatt agtgcttgta atgcaaaata ttctaaattt ttatatcata
     2701 tttcttcctc aaattgttac aataattatg atgattacat ttgacgaaac caaagtgtag
     2761 caccgcactc aatgtaaact tagtacttat tacacttgtc acacttgttt actccttatc
     2821 tgtatgtggc tttaccttaa cattcgcggc caatagcgaa aatgcgattg aacaactgaa
     2881 agctgatcca tccatttcca cacatgcggt agataaattt ggggtcgaaa tgctctatcc
     2941 aaccaagcat gcaggtcaag aatggtacat gaatatggaa aaccccacct ctgatcaaag
     3001 attcaatcct caagatcata taacaaggaa tcatgacggg tcctggaaaa tga
//
LOCUS       DASSIK010000283         2697 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_451641, whole genome shotgun sequence.
ACCESSION   DASSIK010000283 DASSIK010000000
VERSION     DASSIK010000283.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2697)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2697)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2697
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_451641"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..293)
                     /locus_tag="VFI64_05310"
     CDS             complement(<1..293)
                     /locus_tag="VFI64_05310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242741.1"
                     /translation="MVSNECILFDIDGVLVDTRSSYNTTIKETVKHIASIINPSLDNV
                     IPLVTDDLIFKFRQSGKFNNDVDTSYALLLSILCAPDPHWRINRFIEEIADNAT"
     gene            complement(346..1380)
                     /gene="hisC"
                     /locus_tag="VFI64_05315"
     CDS             complement(346..1380)
                     /gene="hisC"
                     /locus_tag="VFI64_05315"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR01141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HET7242742.1"
                     /translation="MKSISKIERYSKPEKSPSIKLDANENVVLDRNFLSQLAMAEANK
                     IDLRKYPLDLYDNLYESLSKYLRVGEKNLLIGNGSDQIIELLLTFIGSGKTVTLPTPT
                     FSYFVSRCQLHGIKISKIPMLPESNTFERRLFMSSAKKSQLVYLCSPNNPTGNQLDRS
                     IIQEILELKDVLVILDEAYVEFAKYSMARSVEKYDNLVILRTFSKAFGLAGSRIGYFI
                     SNKRFAKFIRTNVQSPYPVNSLSLALAISVISNVQKINECVDLIKRERQRLYERISKM
                     DRIITYQSDANFIFIRCNGKYKSIINSLRSHGVGVKELGELYGYGKCIRITVGTPEMN
                     DATISALNDT"
     gene            complement(1401..>2697)
                     /gene="hisD"
                     /locus_tag="VFI64_05320"
     CDS             complement(1401..>2697)
                     /gene="hisD"
                     /locus_tag="VFI64_05320"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF013013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004399 - histidinol dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HET7242743.1"
                     /translation="LLVIRTLLVKYGNTEAAALRKSKMISEQDYEKIKSIINRVIRIG
                     NAALFEYTAKLDGVKIRSLRVTDKEIDRAYEFVTEEQIKSLEVMKEMLIINESKLLGL
                     LRNLSTISHGIKLERILKPLESVGCYIPGGLARYPSTLIMCVIPAKIAKVKRVVIMSP
                     PHGDGNIDPLTLVASDICDVDEVYRIGGAQAIAALAYGTETISKVDKVVGPGGTYVNI
                     AKLLVSRNVGVDMFAGPTELVVYADAKADPKLVSRDLISQAEHSPDTLCGVVTTSKNI
                     VKRVKICLRNILSDDSLPRKEVVRQSISNNSFIALCRNSNAAISFINEFAPEHLEIIC
                     RDPRHISQKINSAGVVLEGEYTPSSASDYCLGSNHVLPTLQVGKYRGGLSVLDFIKIV
                     THISVSKRGLRSVENFIRELTSMESLPNHYLAIKERLDG"
BASE COUNT          787 a          572 c          465 g          873 t
ORIGIN      
        1 gttgcgttgt ctgcgatctc ctcaatgaat ctgttaatac gccaatgcgg gtcaggtgcg
       61 cataagatac tcagcaataa cgcgtatgat gtatctacat cgttgttgaa tttgccagat
      121 tgcctgaatt taaatatcag atcatctgta acgagaggaa ttacgttatc gagcgacgga
      181 ttaataatac ttgcgatgtg ctttacagtc tccttgatcg ttgtattgta agacgatctc
      241 gtgtctacca ataccccatc gatatcaaaa aggatacatt cattagaaac catcaaaatg
      301 ttcccctaaa tcgaagaagg aaatattgga gagcataata atcgctcatg tatcattcag
      361 agctgagatt gttgcatcat tcatttcggg agtcccaaca gtaattctaa tacatttgcc
      421 ataaccatac aattctccaa gttctttgac tcctactcca tggctgcgta acgaattaat
      481 gatacttttg tactttccat tgcatcttat gaaaataaag tttgcatcag attgatatgt
      541 aattatccgg tccattttag aaatcctttc gtatagtctt tgtctctctc tttttatcaa
      601 atctacgcat tcatttatct tctgaacatt tgaaattact gatattgcta gtgcaagcga
      661 cagactgttg accggatatg gtgattgaac atttgttcta atgaatttag cgaatcgttt
      721 attggaaata aaataaccta tccgagatcc tgctaatcca aatgccttag aaaaagtccg
      781 cagaatcacc aagttatcat atttttctac agatcttgcc atggaatatt ttgcaaattc
      841 aacatacgcc tcatcaagga tcaccagcac atctttcagt tccagtatct cttggatgat
      901 ggatctatct aactgatttc cagtaggatt atttggagaa catagataaa ctagttgaga
      961 tttttttgcc gaactcatga ataatcttct ttcaaacgta ttactttcgg gtaacatcgg
     1021 tatcttcgat attttaattc catgtaactg acaacggcta acaaaataag aaaaagtagg
     1081 agtgggtaaa gtaactgtct tgccgcttcc aatgaaagtt aaaagcagct caataatttg
     1141 atcggatccg ttaccaataa gcaaattttt ttcgccaacc ctgagatatt tagacaaact
     1201 ttcatacagg ttgtcatata gatcaagcgg atattttctc aaatcaattt tgttcgcttc
     1261 cgccatagct aactgactta agaaatttct atccaaaacc acattttcgt tagcatctaa
     1321 tttgattgaa ggactttttt caggtttaga gtatctttca attttggaaa tactcttcat
     1381 tctttgactg atccaatcca tcatccatct agtcgctcct ttatcgccag gtagtgatta
     1441 ggtagactct ccattgacgt cagttctctt atgaaatttt cgactgaccg tagtccacgt
     1501 ttgctaaccg atatgtgagt tacgatctta ataaaatcca agacggatag tccccctcgg
     1561 tacttcccaa cttgcaatgt tggaagtaca tggttggaac ctaggcaata gtcgctggcc
     1621 gaagaaggtg tatattcgcc ctccagaacc accccggcag aattaatttt ttgagatata
     1681 tgtcgtgggt cacgacatat aatctctaag tgttccggcg caaattcatt aatgaaagaa
     1741 atagcagcat tcgagtttct gcacagagct ataaaggaat tgtttgaaat gctttgacgt
     1801 actacttcct ttcttggtaa agagtcatca gacaaaatat ttctcaaaca aattttcacc
     1861 ctttttacaa tattcttaga tgtagtaact acgccacata atgtgtccgg gctatgttcg
     1921 gcttgcgaaa ttaaatccct gctgaccagt tttgggtctg cttttgcatc tgcatagaca
     1981 accaactctg taggtccagc aaacatatca acacccacat ttcggcttac cagtagcttt
     2041 gcgatattca cgtaggttcc cccaggaccc actaccttgt ccactttaga aatggtttca
     2101 gtcccatatg ctaaggcagc aatagcctgc gcaccgccaa tcctgtacac ttcgtcaaca
     2161 tcacatatgt ccgatgctac tagtgtaagt ggatcaatat ttccgtctcc gtggggaggt
     2221 gacataatca ccaccctctt gactttggca atcttggcag gaattacgca catgataaga
     2281 gtacttggat atcgagccaa tccacctggg atataacacc caacggattc caacggtttg
     2341 agtattcgtt ctaacttaat tccatgggag attgttgata agttcctgag gagccctaat
     2401 agtttactct cattaataat aagcatttct ttcattactt ccagggattt tatttgttct
     2461 tcagttacaa attcataggc acggtcaatc tctttatcag taactcttaa agacctaatt
     2521 ttgacaccat ctagttttgc agtatactca aaaagtgccg cattaccaat cctaattact
     2581 ctgttaatga ttgacttaat tttttcataa tcttgctcag aaatcatttt tgacttgcgt
     2641 agagcggcag cttcagtatt cccatacttc accaatagag ttcttatcac tagtaaa
//
LOCUS       DASSIK010000284         7176 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_646447, whole genome shotgun sequence.
ACCESSION   DASSIK010000284 DASSIK010000000
VERSION     DASSIK010000284.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7176)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7176)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7176
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_646447"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..243)
                     /locus_tag="VFI64_05325"
     CDS             complement(<1..243)
                     /locus_tag="VFI64_05325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242744.1"
                     /translation="MVELKSELLVMFVAMGLFSQALMINPVQSLVQSSEASDIISTKN
                     SEGFTLSFSASNADRKNPVVYSFAKPIPTNWQLIIQN"
     gene            complement(269..1411)
                     /gene="sat"
                     /locus_tag="VFI64_05330"
     CDS             complement(269..1411)
                     /gene="sat"
                     /locus_tag="VFI64_05330"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004781 - sulfate adenylyltransferase
                     (ATP) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HET7242745.1"
                     /translation="MNQVSILPHGGKLVNNVVTAKDLLGMTTFDVSRDIRTEVENIAQ
                     GIFSPLDGFLNEDDLQQVLREGRLTDGTAWTIPIVFDVDDHTARNLKDLGDVVLTCEG
                     ESFGIIHVKDIYRFDKVHLSTSVYGTTDRNHPGVNKVLAMKDILVSGKTEIFAVQDRL
                     GMRQFRMSPLETRNEIIRRKWNTVVGFQTRNVPHIAHEMVQKAALNIYDGLFINPLIG
                     KKKTGDFTDEMIVRSYDLLIRNYYPQEKVLFATLHTEMRYAGPREAIHHAIMRKNFGC
                     THFIVGRDHAGVGEYYPPYAAHDIFKNYPDLGIEPVFFPSFYYCRKCLAYANAKTCPH
                     GHEFREELSGTMIRKMVNTGEIPDKHLMRPEVSQLIISSDDPFVKE"
     gene            complement(1408..2196)
                     /locus_tag="VFI64_05335"
     CDS             complement(1408..2196)
                     /locus_tag="VFI64_05335"
                     /EC_number="1.8.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004604 - phosphoadenylyl-sulfate
                     reductase (thioredoxin) activity [Evidence IEA];
                     GO_process: GO:0019379 - sulfate assimilation,
                     phosphoadenylyl sulfate reduction by
                     phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoadenylyl-sulfate reductase"
                     /protein_id="HET7242746.1"
                     /translation="MDLLSSDRVNRSKPSFDQLNSISEEMESKSAREVIRWALESYAP
                     NVALASSFGAEDAVLIDLICEIDGAHARIFTLDTGRLNQETYDVMEDVRKRYGVTIEV
                     FFPDSPQVEEMVTQKGINLMYGSIENRKLCCKIRKVDPLKRALTGLECWITGLRREQT
                     ITRNEIKKIEIDSAHGNIVKLNPLADWTSDQIWKYIKDNEIPYNKLHDLGYPSIGCAP
                     CTRAVKPGEDSRAGRWWWENSSHKECGLHWDPVKNKSDRSSKVN"
     gene            2357..3730
                     /locus_tag="VFI64_05340"
     CDS             2357..3730
                     /locus_tag="VFI64_05340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242747.1"
                     /translation="MSDEFWNNLDQYRELGLDAPRWIASSSDELESLAILDSFAKTKR
                     SNYLTDYSWFDAFPYSGKNPEIVRRVYNFKDFDNANILKNKRIVSLFNVHADTLCDSL
                     ALLKMLTNFCAKINPKYRVKCVGISTTSHRESEFVLLDYIDVHRGDKIGNTAINTSSI
                     KVIDPLEQPDSPVNIAISLTASLENLLILGCTTGFRIIPIYDGPNDDIINRIQTSHDA
                     FASKYDIFIDDYSSIKTGKLFLGATAYAHTEKQLPVRYDLIKPGMAVLLTDKLGSLSP
                     LNIFTMEKLEEFKPNAPNELADSVIKNEIIKSLTQPKFSLGKIVAKYSPELGNEFDVS
                     TNLVAVHPAGIDGALALLHLARISNSHLKIREIPMKYEEFAIRATTENIIPNSTSSAN
                     GCHIIIASNEVANQIAEDLKKHNFDATIIGEVIEKDGAKVTISKKLRSYMAADRLINR
                     FELSDSI"
     gene            3814..4245
                     /locus_tag="VFI64_05345"
     CDS             3814..4245
                     /locus_tag="VFI64_05345"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HET7242748.1"
                     /translation="MDNISSCIFCNIAKYITKARIISENEHAVAFLDAVPLRRGHTLV
                     ATKMHCVKLQEINSDEIVALFGLVSLVADALEKGMDANATLIAIHNGKQAGQEIPHLH
                     VHILPRKRDDGGAPIHSIFKTRISIDDSEMDNILLKIKAKL"
     gene            complement(4295..5002)
                     /locus_tag="VFI64_05350"
     CDS             complement(4295..5002)
                     /locus_tag="VFI64_05350"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF024811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HET7242749.1"
                     /translation="MNNPSSYFLFFDLGQTLINEWEMIRYLDSIFLELLEGFGTKIDR
                     LNYIAIRNNVIRNRIIGNGDFEELIFEVCKLLRPEGYGRLIFQHFQPHIQYARQKHLT
                     LYDDALPTLTQLRKKYQMGIIANQSGHALSFLQKYGIIGLFEAVVFSSQTGFRKPDRR
                     IFEAALLSAGKSGPECVMIGDRLDTDIKPANELGMKTIRITNSLFSQQEPLTDSEHPT
                     LTIKSLGEIPSEIVRIG"
     gene            5201..5962
                     /locus_tag="VFI64_05355"
     CDS             5201..5962
                     /locus_tag="VFI64_05355"
                     /inference="COORDINATES: protein motif:HMM:NF025217.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HET7242750.1"
                     /translation="MKIAEFVTNLPRSVMSGEHVFLSDKVIRRIFTLADLRSSDVFYD
                     LGCGNSNAILIAANEYRVKKSIGIENRKRAVKKVLSKINGIDNASIINDDIRKIQISD
                     ADVILFWFYDDRIVKRMLDRFTLTLKKGTRIISIWSPPGLVLPEKIDFPFFVSRIPFT
                     FAENVEKQFEKIYGQPCIDFTGSWLLAEKYIDGIETVSSQYKRFVNILYGMIIWINAW
                     NMGVACEEEIPPPVESYLGILKTFFNIDLSDMFDR"
     gene            complement(6011..6979)
                     /locus_tag="VFI64_05360"
     CDS             complement(6011..6979)
                     /locus_tag="VFI64_05360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046873 - metal ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HET7242751.1"
                     /translation="MTEIGERKLGLESITNKSLTWVDIQKPTREKMSILEQLYPFHEL
                     NIEDCLSKIQIPKVDRYEDHIFVILHFPTIDKEKSIPRTTQLAIFAGFDYLVTVQQGE
                     LKPLTEMFQICKVNEKQRDSFMGTSSGYLLHSIIDLLVDDLLHILMKLEGNLDDIEDV
                     VFDEKVAVAKEISLLRREITTLRRVVIPLKRIILDLSKDIQKFSEEDLTLYFDDVKDH
                     IDKVIEVLEESKETIEIFKDTDFMLSTEKSNKILAVLTILFTLSIPATVVAAIYGMNV
                     NLPGGIETGPATFFGPFTSFTLLVIAAILPAVIMIWYFKRQGWFGW"
BASE COUNT         2192 a         1400 c         1317 g         2267 t
ORIGIN      
        1 attctgaatt atcaactgcc agttagtagg aataggtttt gcgaatgaat atactactgg
       61 attctttctg tcggcattag aggccgagaa agaaagagta aaaccttcac tattctttgt
      121 gcttataatg tcgctggctt ccgaagactg tacgagactt tgaacagggt tgatcatcaa
      181 tgcctgacta aataaaccca tagcaacaaa cataacaagg agttctgatt tcaattctac
      241 caagattatt aattattcta gacactagtt attcctttac aaatggatca tcagacgaga
      301 ttattaattg tgatacttct ggcctcatta gatgtttgtc aggtatctct ccagtattta
      361 ccatttttcg aatcatagta ccactcaact cttctctgaa ttcatgaccg tgcggacatg
      421 ttttagcatt cgcgtatgca aggcattttc tgcaataata aaacgacggg aagaaaacag
      481 gctcaatgcc caaatcagga tagttcttga atatatcatg tgcagcgtag ggcgggtagt
      541 actcacctac ccctgcatga tccctaccga caataaaatg agtgcagcca aagttcttac
      601 gcattattgc atgatggatg gcctcccgtg gtcctgcgta tctcatttct gtgtgaagag
      661 ttgcaaacaa taccttttcc tgcggataat agtttcggat caaaagatca taagacctta
      721 caatcatttc atctgtaaag tctcctgtct tcttctttcc gatcaaggga ttaatgaaca
      781 gtccgtcata gatattgagt gcagcctttt gcaccatctc gtgggcaata tggggaacat
      841 tccgtgtctg aaatccaacg acggtattcc attttctgcg tataatttca tttcgtgtct
      901 ctaggggact catcctaaat tgtctcattc ccaatcggtc ctggaccgcg aaaatttcag
      961 ttttgccact tacaagaata tctttcattg caagtacctt attcacacct ggatggttcc
     1021 tatcagtggt cccatacact gaagtagaga ggtggacttt atcgaacctg taaatatctt
     1081 tgacgtgtat tatgccaaaa ctttctcctt cgcaagtcaa gactacatcc cctaagtcct
     1141 tcagatttct tgctgtgtga tcatcaacgt caaaaactat tggtatggtc caggcagtgc
     1201 catcagttag tcttccttcc cttagaactt gttgcaagtc atcctcattc aggaaaccat
     1261 ccaaaggact aaaaataccc tgggctatgt tttcaacttc agtacgtatg tctcgactta
     1321 cgtcaaatgt tgtcattcct aataaatctt tagccgtaac aacattattt accagtttcc
     1381 caccatgcgg caggattgat acttgattca atttacctta cttgacctgt ccgacttatt
     1441 tttcacggga tcccaatgta ggccacattc cttatgagat gaattctccc accaccacct
     1501 gccagctcga gaatcttctc ctggcttcac tgccctggta caaggagcgc atcctatgct
     1561 cgggtatcca aggtcatgta atttattata cggaatctca ttatctttta tatatttcca
     1621 aatttggtct gaagtccaat ctgcaagtgg attcaatttt acaatgtttc catgcgctga
     1681 atcaatttcg atttttttaa tttcatttct ggtaatggtt tgctcgcgcc ttaatcccgt
     1741 gatccaacac tccaatcctg tcagtgccct cttaagtggg tcaacctttc ttattttaca
     1801 acatagcttt ctattctcga tactcccata catcaaattt attcccttct gtgtaaccat
     1861 ttcctcaact tgaggactat ctggaaagaa tacctctatc gtcacaccat atctctttcg
     1921 tacatcctcc attacgtcgt atgtctcttg atttaatctg cctgtatcaa gtgtgaaaat
     1981 cctagcgtgt gcaccgtcga tctcacaaat taagtcaatc aacactgcat cttctgcacc
     2041 aaaactggac gccaatgcga catttggcgc atacgattcc aaagcccacc ttatgacttc
     2101 tctagcagac tttgattcca tttcttcaga tattgaattt aattggtcaa aggatggttt
     2161 agaacggtta acacggtcag aacttaacag gtccatatag gaaatttcac acagtagatt
     2221 tataattatt tgtttttcat gtacaaatag attgcaatag gttgaaattg gtgaggcatc
     2281 tcgtcttatt tattaagaag agctgtctta tgctgattga ttatagataa acgaaaatta
     2341 aacaagtgat aagataatga gtgatgaatt ctggaataac ttagatcaat accgcgaact
     2401 gggattagac gcaccacgct ggatagcgag ttcctccgat gagttggagt ctcttgcaat
     2461 attagactct ttcgccaaaa caaagagatc aaattatctc acagattatt cttggtttga
     2521 cgcattccct tatagtggaa aaaatccaga aatcgtaaga agagtatata attttaaaga
     2581 ctttgataac gcaaatatct taaaaaacaa acgaattgtg tctttattta atgtgcatgc
     2641 tgacaccctc tgtgactccc tagcgttatt aaaaatgttg accaattttt gtgcgaagat
     2701 aaatccaaaa taccgagtca agtgtgtagg gatctcaaca acttctcatc gagaaagtga
     2761 gtttgttttg ttggattaca ttgatgtaca tagaggcgac aagattggaa atactgcaat
     2821 taacacatcc tccatcaaag tcattgatcc tttagaacaa cctgattctc ctgttaatat
     2881 cgctatctct ttgacagcat ctttagaaaa ccttcttatt ctgggttgca ccacaggttt
     2941 cagaattatc cctatatacg acggtccaaa tgatgatata attaatcgca ttcagactag
     3001 tcacgatgcg ttcgcttcaa aatatgatat atttatcgac gattatagtt caattaagac
     3061 tggaaagtta ttcttaggag caacggcata tgctcatact gagaaacagc tgcctgtgag
     3121 atacgactta ataaaaccag gaatggcggt tttattaacc gacaaacttg gatcattatc
     3181 tcctctaaat attttcacca tggagaagtt agaggaattt aagccgaatg cccccaatga
     3241 gcttgcagac tccgttataa agaatgaaat tataaagtct ctcactcaac ccaaattttc
     3301 acttggtaag attgttgcca aatatagtcc cgaacttggt aatgaatttg atgtttctac
     3361 aaacttagtc gcagttcatc ctgcaggtat cgatggagct ttggctctac tccatcttgc
     3421 aagaatttca aattctcatt tgaagataag agagatacct atgaaatacg aggaatttgc
     3481 gatcagggca acaactgaga atataattcc aaattctacc tcttcagcaa atggatgcca
     3541 cattataata gcaagtaatg aggtggcaaa tcaaatagca gaagatttga aaaaacataa
     3601 tttcgatgca acaataatag gagaagttat agaaaaagac ggtgcaaaag tgaccattag
     3661 taaaaaacta aggtcttata tggcagcgga tcgtctgatt aatagatttg aactaagtga
     3721 ttctatttag ctgtttctgt taatcatctg cggttaatgt gaaatgttta taaaataatt
     3781 gatgatggtc ataattaccg cgaggtgtgc attttggata atatttcaag ttgtatcttt
     3841 tgtaacattg cgaaatatat aactaaagca agaattatca gtgagaatga gcacgcagtc
     3901 gcctttcttg atgcagtccc attaaggcgc ggacatacac ttgtagcaac aaaaatgcac
     3961 tgtgtaaaac tgcaagaaat aaattctgac gaaattgttg ctttgtttgg attagttagc
     4021 ttagtggccg atgcacttga gaaaggcatg gatgcaaatg ctactctaat cgcaattcat
     4081 aatggaaaac aagccggtca agagataccg catctgcacg ttcatatctt acctcgtaaa
     4141 cgtgacgatg gtggagcccc tattcattcc atctttaaga caagaataag tattgatgat
     4201 tcagagatgg acaatatctt gcttaaaatc aaggctaagc tataagtatc taagcacaaa
     4261 gaaaccttag aaaagatata ctagatgtga gcgatcaacc gattctaact atctccgacg
     4321 ggatctctcc taaactttta attgttaatg tcggatgctc gctgtcagtt aacggttctt
     4381 gctgagagaa caatgagtta gtaatcctaa ttgttttcat tcccaactcg tttgcaggtt
     4441 ttatgtcagt atccagtcga tcacctatca ttacacattc agggcctgac ttgcctgcac
     4501 ttagaagagc agcttcgaaa atccttctgt ccggctttct gaatccagtt tgagaggaaa
     4561 aaacgacggc ctcaaagagc cctattatcc catacttttg caagaaagat aatgcgtgac
     4621 cgctctggtt tgcaataata cccatttggt actttttacg aagttgggtt aatgttggta
     4681 aagcatcgtc ataaagggtt aagtgttttt gtcttgcata ttggatatgg ggttgaaagt
     4741 gttggaaaat aagtctacca taaccttcgg gtctaagtaa tttgcaaact tcaaaaatta
     4801 actcctcaaa atcaccgtta ccgataattc tatttctaat tacgttattt cttatggcaa
     4861 tataattcaa tctatctatc tttgttccaa atccttcaag taattctaaa aatatagaat
     4921 ctaaataccg tatcatttcc cactcattga ttaacgtttg tccgagatca aagaataaga
     4981 aatatgaaga aggattattc atttctagtc acactgtttc tcgggaacga taagtgaaat
     5041 aacaaaaatt cagctattag agtcttcttt cccccgactg agtcgaaaac tcaatagatt
     5101 ctaacttgcg agtcggcaca aaggttcata aaaaagaaat aatttccagg aaatatcctt
     5161 tgatactcgg cgggtggcta ttttatggtg atattcgaat ttgaagatag ctgaatttgt
     5221 cacaaatcta ccaaggtctg tcatgagtgg ggaacatgta tttctctcgg ataaagtgat
     5281 tagaagaatt tttactcttg ctgatttaag gtcatccgac gttttttatg atttgggttg
     5341 tgggaatagt aacgcaatat taattgctgc aaatgaatat agagtaaaga agtcgattgg
     5401 aattgaaaat agaaagaggg cggtaaagaa ggtattatct aaaatcaatg gaattgataa
     5461 tgcatcgata atcaatgatg acattcggaa gatacagata tctgacgctg atgtaatctt
     5521 attttggttt tatgatgatc gtattgttaa acgtatgtta gacagattta ctctgacttt
     5581 gaaaaaaggg actagaatta tatccatatg gtctccgccg ggattggtat taccggaaaa
     5641 aatagacttt cctttttttg tttcgcgtat cccgtttaca tttgcagaaa atgttgagaa
     5701 acagtttgag aaaatttatg gacaaccgtg tatcgacttt accggctctt ggctactcgc
     5761 tgagaaatat attgacggaa tcgaaacagt gtcaagccag tacaaaagat ttgttaatat
     5821 cctatatggc atgatcattt ggataaatgc atggaacatg ggtgtagctt gcgaggagga
     5881 gattccacca ccagttgagt cctacttggg catattaaaa acgtttttta acattgattt
     5941 atctgacatg tttgacaggt aatatcacgc tgacgaaaat taataacctg gaattaatgt
     6001 tccaggactc ctaccaccca aaccaacctt gcctcttaaa ataccaaatc ataatcacgg
     6061 caggcaatat cgcagcaatt accagaagag tgaatgaagt gaatggtcca aagaaggtcg
     6121 cagggccagt ctcgattcca ccaggtaaat ttacgttcat tccgtaaata gctgcaacca
     6181 ctgttgcggg aattgacagc gtaaaaagga ttgtcaggac ggccaagatc ttgttcgact
     6241 tttcggtgct tagcataaag tcagtatcct tgaagatttc tattgtttcc tttgattctt
     6301 cgagtacttc aatcaccttg tcgatatgat ctttcacgtc atcaaaatac agagtaaggt
     6361 cctcttcaga gaacttctgt atatccttac tcagatctaa aataatgcgt ttcaatggaa
     6421 tgacaaccct cctgagtgtt gttatttctc gccttaagag cgaaatttcc tttgcaacag
     6481 cgactttttc atcaaataca acgtcttcta tgtcatctaa gtttccttca agtttcatca
     6541 aaatatgtag taaatcatcg accaacaaat ctataatact gtggagtaag tatccagaag
     6601 acgtacccat gaatgaatct cgctgttttt catttacttt gcagatttga aacatctcgg
     6661 ttagtggttt taattctccc tgctgcacag taactaaata gtcaaatcct gcaaaaatag
     6721 caagttgcgt tgtacgtgga atactcttct ctttatctat ggtaggaaaa tgaagtataa
     6781 caaaaatatg atcctcgtaa cggtcaactt tgggaatttg tatttttgag agacagtctt
     6841 caatattcaa ttcgtggaac ggataaagct gttcgagtat actcatcttt tcacgcgtag
     6901 gtttctggat atctacccac gtcaagctct tgttagtaat cgattcgagg cctagttttc
     6961 tttctccaat ttctgtcatc aaacctcatt ctcaattttt ggtctttacc actgtaatat
     7021 tctatattaa tattcccgta ttacagagta ctaatctcgg ggaaccgaac aacaggtgat
     7081 gataataata atctcagatt agttaaatat cggatttgca ttaagagttg taaatatatt
     7141 tgttgtaata attcgataag agccgattca gtttgg
//
LOCUS       DASSIK010000285         2191 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_252794, whole genome shotgun sequence.
ACCESSION   DASSIK010000285 DASSIK010000000
VERSION     DASSIK010000285.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2191
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_252794"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..214
                     /locus_tag="VFI64_05365"
     CDS             <1..214
                     /locus_tag="VFI64_05365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242752.1"
                     /translation="FHNFGRKRFDAYQRLARWMTPKSYIVFADVFFDYKTDSRRLASH
                     FSNVEERPSSTIGGAYKVLVMSEPKK"
     gene            535..819
                     /locus_tag="VFI64_05370"
     CDS             535..819
                     /locus_tag="VFI64_05370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242753.1"
                     /translation="MGIYMGMGLAISFVLPFPVSLLAMFIVIIMIDWLRARYIMKKMG
                     ITDIRHMFNAFSPTQTGYQPLKYYCMSCGIEHRETSCPNCGSKMTRVGGG"
     gene            831..1091
                     /locus_tag="VFI64_05375"
     CDS             831..1091
                     /locus_tag="VFI64_05375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242754.1"
                     /translation="MNIFRRWKPKGRMYSFRCFQCGSAFLSSFNLEAPICGKCIQKAK
                     SLDSTIDNQKLCTKCGNRGVIYGKEMCYGCYFGFEKKEEALR"
     gene            complement(1823..2041)
                     /locus_tag="VFI64_05380"
     CDS             complement(1823..2041)
                     /locus_tag="VFI64_05380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dodecin family protein"
                     /protein_id="HET7242755.1"
                     /translation="MMTHVAKIIEIIGSSEKGWSEAAQEALDEAKKTIKGITGLEVED
                     ITAKVDPNTGNITQYRVSVKIAFGVEHS"
BASE COUNT          656 a          408 c          416 g          711 t
ORIGIN      
        1 cttccacaac tttggaagga agcgttttga cgcgtatcag agactggcac ggtggatgac
       61 gccaaagtcg tacatcgtat tcgctgacgt gttcttcgac tacaagacag attccaggcg
      121 actggcgagt cacttcagca acgtggaaga aagacctagc tccactatag gcggggcgta
      181 taaggtgctg gtgatgtctg agccgaagaa atagtcgatc ctgactagta atctcagatg
      241 acagataata ccactcttta aacatttatc acttggtaaa tattatttgg attttcattt
      301 taacaaatta cagagatagc atatgtttat tgctcagcaa tggctagatt tcgcttcggc
      361 catactgcga tccaaatact tactactaat aagtatagat taactaagtt cgcttggtta
      421 tgattcccac aataaccttg ttaattaaga gtcttattct ggctacgggt attatacaac
      481 atgtcgaatc cctacgtaaa taacaggtct tatatgggaa acatgttcat gtggatggga
      541 atatacatgg ggatgggctt ggctatttcc tttgttctcc catttcctgt atcacttctg
      601 gccatgttca ttgtgataat tatgattgat tggctaagag ccagatacat tatgaaaaaa
      661 atgggtatta ctgatataag acatatgttt aatgcctttt cgcctacaca aacggggtat
      721 caaccactaa agtattactg catgagttgc ggaattgaac acagagaaac ttcctgtcca
      781 aattgtggtt ctaaaatgac tcgagtcgga ggaggatgat ggtaatcgct atgaacattt
      841 ttagacgctg gaagccaaaa ggcagaatgt acagttttag atgtttccag tgcgggtctg
      901 cttttctgtc cagcttcaac cttgaagctc ccatatgtgg aaaatgcatt caaaaagcta
      961 aatcactgga ttcaaccatt gacaatcaaa agttatgtac caaatgtggt aacagaggag
     1021 taatttacgg gaaggaaatg tgctatggtt gctatttcgg atttgaaaag aaggaagagg
     1081 cgttgcgata attcatacat acaaaaatgt cgaacaagct tgcattcctt tacatgttaa
     1141 tgatatgaaa attagtactc gatatattgt tcataatatt atagaatcac ctcttcaaaa
     1201 tctttgatat cataattctc ccttatggtt tccatttctt ggttggtcct agaccgtgga
     1261 ttattattat tcaaattgta atattcatcg aatgaaatcg gcacaactcg tatcttatta
     1321 tcaagacata tagggcatct gagaatcagg ttttcgccag gtatggaaga ggcacaccaa
     1381 agacacaaat cacatataat aaactgtgtc cggtcgtgat atgacccatt ctttaaacga
     1441 acttcagaat ccaggatcac tccattgttt gatataagga gtcaccttct tggaagcacc
     1501 aaaactcaac aaatccatgt gtaaataaca atctgttgta aaatattaca attacgtctc
     1561 gaacttataa gttattttgt caataaaagt tgatttgtta cgtaatttga tctttactcg
     1621 gccattttat ataaatttta tacttatcat aacatcacaa tcatttcagc taaataaact
     1681 ttattgttgt ttattttttc ccgaaatatt tttaccattt gactgcccat atgtggaata
     1741 atttcaagcc tctttgtgat cactctttaa acaaacagaa gcaagaccgt acaaaaaaga
     1801 agggataagt tgatcgcgga gtttaggaat gttcaacccc aaatgctatc ttgactgata
     1861 cccggtattg agtaatattg ccagtgtttg ggtctacctt tgcagtaata tcctctactt
     1921 ctagtccagt gattcctttg atggtttttt tggcttcgtc gagtgcttct tgcgctgctt
     1981 cactccatcc tttctctgaa ctcccgataa tttctattat ctttgctacg tgtgtcatca
     2041 tgtaataatg gtctccaagg ctaataagta ggccgcttcg tgcaagtcaa taattcttca
     2101 cttggggatg aaagatacaa ttttgttttt ggaaaagact ttcgcggctg cgtaagttcc
     2161 tttttatttt tgattttatc taaagcagac c
//
LOCUS       DASSIK010000286         2335 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_756704, whole genome shotgun sequence.
ACCESSION   DASSIK010000286 DASSIK010000000
VERSION     DASSIK010000286.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2335)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2335)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2335
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_756704"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            157..978
                     /locus_tag="VFI64_05385"
     CDS             157..978
                     /locus_tag="VFI64_05385"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HET7242756.1"
                     /translation="MGIIYYRRGWTLNIAYSCGITIINSIDPTNNRHHMAGLPDYMIN
                     IVRTMPPITQNNFETSGKSGCYLQSDFSFPDIYYTSEEIRSLPEPLDRIKNVRPLSPV
                     VSLENATEKERNLNHDQNSNAQHDPSQTSYNGTLKKSDEDNQDLRNQSITLMLVDDDR
                     DILFTFKSILAAEGFKVEAFTDPNEALSRFTQADPSYYNLVITDIRMPKINGFQLYQK
                     LKEIKRDIRVLFMTAFEVPGNLLDSMPNINESDIIRKPIEEQRFINKIKTAVNLE"
     gene            complement(1189..>2335)
                     /locus_tag="VFI64_05390"
     CDS             complement(1189..>2335)
                     /locus_tag="VFI64_05390"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HET7242757.1"
                     /translation="IEVIQNPSRALELYFHILDTAKDDILLIFPTMGAIARQEKLGIL
                     NRVKAAAEDRHVSVRIMAPFDLSPNAALADLIKDEIKEIGVRFIETVSGRATVLIVDK
                     RISLVMELKDDSKENFSDAVGLSTYSNSKAGVLSYIAMFENLWSQTDLMEKLKVHDRM
                     QKEFINVAAHELRTPIQPILSLTEALRSDVTSSEGQEMLDIIIRNAERLRQLAENILD
                     VTRIESQTFRLTKENFSLDEILTRIITDCREEVKRNRTNLELILEPESNETFVEADKS
                     RIAQVVTNLITNAIRFTKNGNVSIAVTKGKANDMVVSIRDTGQGIDPEIIPRLFTKFV
                     TKSVTGTGLGLFISKKIIEAHGGSIWAENNLDGRGATFTFTIPVKVS"
BASE COUNT          706 a          466 c          444 g          719 t
ORIGIN      
        1 aaaaattttc aacaaataga agttctggaa atgaccagtc tggaacgggc ctaggactct
       61 tcataagtaa agcaattgta ttggctcatg gtggtaagat ttctgccgcc aacaataatc
      121 agtcaggaac gacattttct atacttttgc ccataaatgg gaataattta ttataggagg
      181 ggatggactt taaatattgc atattcatgt ggtataacta tcattaattc tatagatcct
      241 actaataatc gccatcatat ggctggctta cctgattata tgataaatat tgtaagaacg
      301 atgccaccaa taacccagaa taacttcgag acgagtggga aatcagggtg ttatctgcaa
      361 tcggactttt cgtttccaga catttattat acctcggaag aaataagatc gttacccgaa
      421 cctcttgata gaatcaaaaa tgtacgcccg ttatctcctg ttgtgtctct tgagaacgcg
      481 acagaaaagg aaagaaacct caatcatgat caaaactcta atgcccaaca tgaccctagt
      541 caaacatctt acaacgggac attgaaaaag tcagatgagg ataaccaaga cctaagaaac
      601 caatctataa ctctcatgtt ggtagacgat gatcgagaca tcctgtttac ttttaaatca
      661 attttggctg cagaaggatt taaagtagaa gcattcacag atcccaatga agctttaagc
      721 cgttttacgc aagcggatcc atcttactat aacttggtta ttacggatat tagaatgccg
      781 aaaattaatg gatttcagct atatcaaaaa ttaaaggaaa ttaagagaga cattagggtt
      841 ctatttatga ctgcattcga ggtaccgggt aatttgcttg actcaatgcc caacataaat
      901 gaaagcgaca ttatcagaaa acctattgaa gaacaacgtt ttattaataa aataaagaca
      961 gccgtaaatt tagaataagg aacagggaaa taagaagcaa acgttttcac ttactgacat
     1021 ccatcgctaa tttacgataa attggacaag tggtattaaa ctcgacaact caattgttca
     1081 gcattttgac aataaccatc ttcgtataca cgagataatc ctatagttat agacactcac
     1141 gttttaaatt ttgatgggtc gcataattac aatgacgcta taaaactact aactgacttt
     1201 cacgggaatg gtaaatgtaa aagtggcacc ccttccatcc aggttatttt cagcccagat
     1261 gcttcctcca tgtgcttcaa tgatcttttt ggagataaac aatcccaagc ctgttccggt
     1321 tactgatttt gtgacaaatt tggtgaacag tctaggtatg atttctggat ctataccttg
     1381 tccagtatct cttatactta caaccatgtc attagctttg ccttttgtaa ctgcgattga
     1441 gacgttcccg tttttggtaa atctaatagc attggttatg aggttggtta ctacttgggc
     1501 tattcgtgac ttgtctgctt caacaaaagt ttcgttactc tctggttcaa ggatcaactc
     1561 gagatttgta cggttacgtt taacttcctc tctgcagtcc gtaataattc gagtcaatat
     1621 ttcgtcaagg ctaaaatttt ctttagttag acgaaaggtc tgactctcga ttctggttac
     1681 gtctagtatg ttttctgcaa gctgtcgcag acgttctgca ttccgaatga ttatatccag
     1741 catttcttgg ccttccgagc tagtcacgtc ggaacggagg gcttcagtta aactaagtat
     1801 gggctggatt ggggtccgca attcatgggc agcgacattg ataaattctt tctgcatcct
     1861 gtcatgaact ttcaacttct ccatcaggtc ggtctgcgac cagagattct caaacatggc
     1921 aatataagac aggacgccag ctttgctgtt cgaatatgtg gataagccga ctgcatcaga
     1981 gaaattttct ttagaatcgt ctttaagttc catcactagc gaaattcttt tatcaactat
     2041 cagaaccgtg gctctgccag agacggtttc aataaacctt acaccgatct ctttgatttc
     2101 atcttttatc aaatccgcca aagctgcatt aggcgagaga tcaaatgggg ccattattct
     2161 aacactgacg tggcgatctt ctgctgcagc ctttactcga ttcagtattc ccaatttttc
     2221 ctgtcgggct attgcaccca tagttggaaa aattaacagg atatcgtctt tcgctgtatc
     2281 taggatatgg aagtataatt cgagtgccct tgaggggttt tgtatcacct caatt
//
LOCUS       DASSIK010000287         3034 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_646798, whole genome shotgun sequence.
ACCESSION   DASSIK010000287 DASSIK010000000
VERSION     DASSIK010000287.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3034)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3034)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3034
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_646798"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1087
                     /locus_tag="VFI64_05395"
     CDS             <1..1087
                     /locus_tag="VFI64_05395"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cellulase family glycosylhydrolase"
                     /protein_id="HET7242758.1"
                     /translation="GPYVSVKENNYDAPSPPPNYINDSFKMISEAGLDHVRFLFYWEA
                     YEKNPELFMKEIGSVAKAADKYGIKVIYDNHQWHTSSWLERKGTGFPTLLFLNNSKYT
                     KGGGGNTPDPAAKLFWADWWNRSVKDSQGRDGWTLIADFLKKIVGVVDNHSSTLGYEI
                     LSEPHVDKVSQWSQVGGFNSFIVGELRNATQKTIAYSMNVPVDLKGPINLTPENLAKM
                     APSNKENVVFKISVYGVPDRDAYQKERFDTFLRTRDLTGIPLYIGEWNNVVRTPGEGG
                     VFKINPGASQLTVDNADKILAAFKKAGVWGTAFWKWDYKSADTASFNLITVNNGTLVP
                     TQYYNVLKASVAAIYGNSSGSNNTAVS"
     gene            1734..>3034
                     /locus_tag="VFI64_05400"
     CDS             1734..>3034
                     /locus_tag="VFI64_05400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242759.1"
                     /translation="MKTRSISFIVLCITLIASCFIINKGVFDAAYAQNNTNIFGTDGN
                     KQSSGHEGLPYLGVNMRGYYTSLPQAREDLKDPFPSNYYESSFKTLSQADVIDHVRYR
                     FYWESYVRDPVAFIKELEDVAKTADKYGIKVIYDNHQFHTSSWLNVGRGTGFPAYLFN
                     DPVLYKQGSGGTPKSTAAETWWTNWWNRTIKSVNGTDGWTLQEDFLKKIVSTVDKHQS
                     TLGYEILSEPQVHTKDQWTKIGKYNTFMVDALRKLTSKTIIYSMNIPIDLKSPIQVNA
                     ENLAKMSPNNKQNVVFKFSLYGIPNDGYQSDKLQLFENASRIAGVPLYIGEWNNVKRV
                     ATINEEGKKIWQIEANQSNISQADANMIVEKFKGIGIWGMAYWEWSFVINETPNFNLV
                     DIMYDKATGAGKIQPTKYFEIMTKAYQDVYYQPSERVFPTES"
BASE COUNT         1012 a          519 c          629 g          874 t
ORIGIN      
        1 gggcccttat gtaagtgtga aggaaaataa ttacgatgct ccctccccac cacctaatta
       61 cattaatgat agcttcaaga tgatttctga agcaggattg gaccatgtca gattcctatt
      121 ctactgggaa gcctacgaaa agaatcctga acttttcatg aaggaaatag ggtctgtagc
      181 caaggcggca gacaaatatg gaataaaagt aatatatgac aatcatcaat ggcacacttc
      241 atcgtggctt gagagaaaag gcactggatt tcctacatta ctatttctta acaattcaaa
      301 atatactaaa ggtggtggag gtaatactcc tgacccagca gcaaaactgt tctgggctga
      361 ttggtggaat aggtctgtca aagatagcca aggaagagat ggatggacgt taatcgcaga
      421 ctttttgaag aagattgttg gtgttgtgga taatcattca agtaccctgg gctatgaaat
      481 actaagtgaa ccgcatgttg ataaggtgag tcagtggtct caagtaggtg gattcaattc
      541 attcatagtt ggagaactaa gaaatgcgac tcaaaaaact atcgcctata gtatgaatgt
      601 accagttgac cttaagggac cgataaatct tacaccagag aatttagcaa agatggcacc
      661 ttcgaataag gagaatgttg tattcaaaat aagtgtatat ggagttcctg atagagatgc
      721 gtaccagaaa gaaagatttg ataccttttt gagaacaaga gacttgactg gcatacccct
      781 atacatagga gaatggaaca atgtggtgag aactcctggg gaaggaggag tcttcaaaat
      841 taatccaggt gcaagtcagc tcactgtaga taatgcagac aagatacttg ctgcttttaa
      901 gaaagctggc gtatggggta ctgctttctg gaagtgggat tataagagtg cagatactgc
      961 tagcttcaat ctcataactg tcaataatgg aacattagtg ccaactcaat attacaacgt
     1021 acttaaggct tcggtggcag ccatttatgg aaacagtagt ggcagtaata atacggctgt
     1081 aagctgaatg cgaaccaaga aataacgata gagcttcaga aatcctattt tttgggaagg
     1141 tactaattat ttacactcgt aagtggtttt ttgtcaaatt atccttaatt ctttttccat
     1201 cgcccgcaat gctgccatcc aagaaaccaa gccaaactgt tcttaaaatt gtactcatga
     1261 tctacaaaca tcattttatc ttgttaccta ctttctgata agaaagacta cacagtgcca
     1321 acattagctc gagactctta cgaataaaat cttatttctg aaattttgtg tggatcctct
     1381 acattggtaa tcttcttcta aatcagctaa tattgattcc gtgtaccatt atagggagaa
     1441 gatagcactt ccaacttgtc tattttttat catctaattt cttagaattg tcttatttga
     1501 ttgttaaatg cattcggtat cgaagtttct ttttgtagat attttctaca attatactaa
     1561 acaattttgg taagcattag caaagttctc cttcaatcga gcaacttaat atagtcttaa
     1621 aaatttgaag agaagaatct tcacaatgtt tcaaataggc aggagttaca ttatagttat
     1681 ggaaatacat gagatgcaag tgtttgaagg tctaataatc tagtgatatc tacatgaaaa
     1741 ctaggtctat ttccttcatc gtcctttgta ttacgcttat cgcaagctgt tttattatca
     1801 ataagggagt ttttgatgca gcatacgctc agaataatac caatattttc ggtactgacg
     1861 gtaataaaca gagttcaggt catgaaggtt taccttacct gggtgtaaat atgcggggat
     1921 attataccag tttgcctcaa gccagagaag atctaaagga tccttttcca agtaattatt
     1981 atgaaagtag ctttaagacc ctttcccagg ctgatgtcat tgatcatgtt cgttacagat
     2041 tctactggga atcttacgta agagatccag ttgcattcat taaagaatta gaagatgtgg
     2101 caaagactgc agacaaatat ggtataaaag tcatttatga taatcatcag tttcatacat
     2161 cttcttggtt gaatgttgga cgtggcactg gattcccagc ataccttttc aatgatccgg
     2221 tattatataa gcaaggaagt ggtgggacac cgaagtctac ggcagctgaa acatggtgga
     2281 ctaactggtg gaacaggact atcaagagtg taaatgggac agatgggtgg acactccaag
     2341 aggatttctt aaaaaagatt gtaagtacag ttgataaaca tcaaagtact ctgggttacg
     2401 aaattctgag cgaaccacaa gtccacacta aagatcaatg gacgaaaata ggtaaataca
     2461 atactttcat ggttgatgcc cttcgaaaac tcacgagcaa gactataata tacagtatga
     2521 atattcccat agatctaaaa agtccaatac aagtcaatgc ggaaaatctg gcaaagatgt
     2581 ctccaaacaa caaacaaaat gtagtattca aattttcact ctacgggatt cctaatgatg
     2641 gttatcagag tgacaaactt cagttatttg aaaatgcaag taggatagct ggtgtgccat
     2701 tatatatcgg tgaatggaat aatgtgaaac gagttgctac tatcaatgag gaaggcaaaa
     2761 agatttggca gatagaagct aatcagagta acataagcca agcagatgca aacatgattg
     2821 tggagaaatt caagggaatt ggcatatggg gaatggcata ttgggaatgg agctttgtga
     2881 tcaatgaaac tccaaacttc aatctggtcg atatcatgta tgacaaagca actggagcag
     2941 gaaagatcca acccacgaaa tactttgaaa ttatgacaaa ggcttaccag gatgtatatt
     3001 atcagccctc ggaacgagta ttcccgactg aatc
//
LOCUS       DASSIK010000288         5285 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_452799, whole genome shotgun sequence.
ACCESSION   DASSIK010000288 DASSIK010000000
VERSION     DASSIK010000288.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5285)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5285)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5285
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_452799"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..174
                     /locus_tag="VFI64_05405"
     CDS             <1..174
                     /locus_tag="VFI64_05405"
                     /inference="COORDINATES: protein motif:HMM:NF014841.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HET7242760.1"
                     /translation="AGAALDVFEVEPPTNKKLLEMPNLISTPHIAAQTKEAQELASIV
                     IAEKIIQITRGVI"
     gene            365..823
                     /locus_tag="VFI64_05410"
     CDS             365..823
                     /locus_tag="VFI64_05410"
                     /inference="COORDINATES: protein motif:HMM:NF003269.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15e"
                     /protein_id="HET7242761.1"
                     /translation="MYRYIARAWRKMWKTNTVELKAKAVVWRTEPTVKRIDRPSRLDR
                     ARRLGYKAKQGIVVVRTRVGRGGMRKQRPVSGRRPKHQGVVHIKQSDNMRKVAERRVN
                     EKYPNMEVLGSYYLHKDGMNIWYEIILADTGHPSISKDKEMRGKLKAFAK"
     gene            complement(899..1297)
                     /locus_tag="VFI64_05415"
     CDS             complement(899..1297)
                     /locus_tag="VFI64_05415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242762.1"
                     /translation="MEKRDSSKDAIQKNKEKCGKILSLSKRIRYVGMINDFGRTIAGK
                     LRVGMVPLLNTEQAINDHFIEATRNNLRKSFYSVIGNAIYTLTEHEKVIMLTVPTDWG
                     FYYITLDKETEHIEIKEIIDKVLKLIPTLQ"
     gene            complement(1518..1835)
                     /locus_tag="VFI64_05420"
     CDS             complement(1518..1835)
                     /locus_tag="VFI64_05420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske (2Fe-2S) protein"
                     /protein_id="HET7242763.1"
                     /translation="MSNWVKVCEEKSLKNGELLDFDFEGKQILIAKANNKVFALDRIC
                     THAYADLATGFLDEKEKIVTCPLHMSRFRLEDGGPENLPAEEPLKKYNVESRDGFIYV
                     MVD"
     gene            complement(1862..3316)
                     /locus_tag="VFI64_05425"
     CDS             complement(1862..3316)
                     /locus_tag="VFI64_05425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SufD family Fe-S cluster assembly protein"
                     /protein_id="HET7242764.1"
                     /translation="MSTTSTSTSLSQVDGNYVKNISRENSEPAWMSEMRETAFSKYNS
                     LPFETSPLYSKYSDAKRLHPEQVHIPQTHKQFEPNQDTIERIGELEKEEEKETSVLRI
                     GSYIVRLHITEQMSEQGIVVMDLRDALNKHGDLIRKHLVKNTLKYDEDKFLALEASCF
                     DSGIFIYIPKNVTFNDSIRLVNTLPDDGSSSISRNIVIAEPGSKSSIVQEIYSPPQPA
                     ANNSTQQSYFELLECHVEPNAQLEMVTLQAMDEKSSINFSNRKAFIERDGKMSWYMGL
                     FGTQLSRYKIDSITKGAGSSAEDVEIIFGVGEQSFDISSNLLHYGESSRGRVLAKSVM
                     KDNSKSLFKGMIKIEKGAKSTESYLAGHAILLDKGAKSDAIPGLEIETNEVRATHSAS
                     VAQIDENQIFYLMCRGLSREGAKREIVSGFLEPLSRKMGPRIRAWVNYLIENKWNGKP
                     LMLKTDEAMEQILEVEKSRYREVEDIFEKHYKYR"
     gene            complement(3553..5031)
                     /gene="sufB"
                     /locus_tag="VFI64_05430"
     CDS             complement(3553..5031)
                     /gene="sufB"
                     /locus_tag="VFI64_05430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HET7242765.1"
                     /translation="MTTEEINIHKNNSNNTAQAQKAEGTKQGPQDLNMDYSKYDFKDS
                     TELYVYLSKKGLSRGTVEEISRLKAEPDWMRDFRLRSYDVFMSKPMPNWGGDLSHIDF
                     QNIYYYAKASEKQSKNWDDVPEAVRNTFEKLGIPEAERKFLAGVGAQYESEVVYHNLR
                     EDLEKQGVIFVDTDTAVKKYPDLMKKHFGKVIPPEDNKFAALNSAVWSGGSFIYVPRN
                     VKIDLPLQAYFRINAENIGQFERTLIIADEGAEVHYIEGCTAPVYATESLHSAVVELI
                     AKKGAKIRYTTIQNWSKDVYNLVTKRAYAYEKATVEWIDGNLGSKLTMKYPGVYMLGR
                     GAHAEVISIAFAGKGQHQDAGAKAVHLAPDTTSRITSKSVSKDTGRTTYRGLLHVAKG
                     ATGVKSTVRCDALLLDKDSRTDTYPYVEVNEDDATISHEATVGKIGQDQIFYLMSRGF
                     TESDALSLIVGGFMEPFTKELPMEYAVELNRMVKMEMEGSVG"
BASE COUNT         1469 a         1080 c         1030 g         1706 t
ORIGIN      
        1 gcaggtgctg ctctagacgt ttttgaagtg gagccaccta ctaacaaaaa gctcttagaa
       61 atgccaaatc ttatatcaac tccacacata gcagctcaaa cgaaagaagc gcaagaactt
      121 gcctccatcg taattgctga aaaaattatt caaattacaa gaggtgtaat ttagtaatta
      181 atcaatcaag gcaactccac tcaatcaaac ctattcatct tacaagaatc aaaattggtc
      241 tgaacaccag atctaattga ctctggattt tactatagga tttaagttct aaacgtatcc
      301 gactattcgt ccattttgaa aagacaaaat acagatatta aggggctagt tatacgcgat
      361 ctacatgtac cgctatatag cccgagcctg gagaaagatg tggaaaacta acaccgttga
      421 attgaaggca aaggcggtcg tttggagaac agagccaacc gtcaaaagga tagacaggcc
      481 tagcagatta gatagagcac gcagattggg ttacaaggca aaacaaggca tagtggtagt
      541 tagaacacgg gtaggcaggg gaggtatgcg gaaacagaga ccagtatctg gaagaaggcc
      601 caaacaccag ggtgttgttc acatcaaaca atcggataat atgcgcaaag ttgcagaaag
      661 aagagtgaat gaaaaatatc cgaatatgga ggtattgggt tcttattatt tgcacaaaga
      721 tggcatgaat atttggtacg agatcatact tgctgacact gggcatccat ccatctcaaa
      781 ggataaagag atgcgaggta agctaaaggc gtttgcaaag tagcaatagg ctatctgatt
      841 taagccaatc aaatcttagc taaactccaa gtgcagtatc ggttatagaa ccatggaatt
      901 attgtagtgt tggtattaat ttgagcactt tatctataat ttctttaatt tctatgtgct
      961 ctgtctcttt gtcgagtgtt atgtagtaga aaccccagtc agtaggaaca gtaagcatta
     1021 ttactttttc gtgctcggtt agagtgtaga tagcattacc aatcacggaa tagaatgatt
     1081 ttctaagatt attcctggtt gcctctataa agtgatcgtt tattgcttgt tctgtattaa
     1141 gaagtggcac catccccact ctcaacttgc cagcaatagt tctgccaaaa tcatttatca
     1201 ttccgacata acgtattctc ttcgataggg aaagtatttt tccacacttc tccttatttt
     1261 tttgaatggc atcctttgat gaatctcttt tctccatatt ctaattttac cgatatctcc
     1321 gcaaatataa gtcctcatag cataatgtga gatcttactc gtgattaaga cttgttgtga
     1381 aaggtgtcat gtcgaaattt agcactttaa atcataatga taacttgtgt tctgtcacca
     1441 ataaaaatat ggaataatag aatggagggc atattctctt ttactttacc atttaaagaa
     1501 caatcatatt gagctggcta atctaccata acgtaaatga aaccatctct tgactctaca
     1561 ttatatttct ttaaaggttc ttcagcaggg agattttcag gacctccgtc ctctagtcgg
     1621 aatctcgaca tatgtagagg acaagtaaca attttctctt tctcgtctaa aaatccagta
     1681 gctaaatcag cataagcgtg cgtgcaaatt ctgtccaatg caaacacctt attatttgct
     1741 ttagctatca ggatttgctt gccttcaaaa tcaaagtcca ataattcacc gttcttcaga
     1801 gatttttctt cgcatacttt aacccaattc gacaaaatcg atccgacctc ccggttattc
     1861 cttatcggta tttgtagtgt ttctcaaaga tatcctcaac ttccctgtat ctactttttt
     1921 caacttcaag aatctgttcc attgcttcat ctgttttaag cataagtggc tttccgttcc
     1981 atttattttc aatcaaatag tttacccatg ctcgtatcct aggacccatt tttcttgata
     2041 gtggctcaag aaatccactt acgatttccc tcttcgcccc ttctctgcta agccccctgc
     2101 acatcagata gaaaatctgg ttttcgtcta tctgtgcgac tgaagcagaa tgtgtcgctc
     2161 tgacttcgtt ggtttcaatc tcaaggcctg ggattgcatc tgattttgca cctttatcca
     2221 agagaatagc gtggccagct aggtaagatt cggtggactt tgcccctttt tcaattttta
     2281 tcatgccctt aaagagagat tttgagttat ccttcattac tgattttgcg agaactctac
     2341 ccctagagga ctcgccataa tggagcagat tcgaggagat atcaaatgat tgttctccta
     2401 cgccaaatat tatttcaaca tcttctgccg aagaaccagc acctttcgtt atgctatcaa
     2461 ttttgtatcg tgaaagttga gtgccaaata aacccatgta ccaggacatc tttccgtccc
     2521 tctcaatgaa tgcttttctg tttgaaaaat tgatagaact cttttcgtcc attgcttgga
     2581 gagttaccat ctcaagttgg gcatttggtt ccacatgaca ttccaaaagt tcaaaataac
     2641 tttgctgtgt actgttgttg gctgctggct gtggagggga gtaaatctcc tgcacaatgc
     2701 ttgattttga accaggttct gcgataacaa tatttctact aattgaggag ctcccatcat
     2761 cgggaagagt attcactaat ctgatcgagt cgttgaatgt gacatttttt ggaatgtaaa
     2821 tgaaaatgcc tgagtcaaag caagatgctt cgagggccaa aaatttatcc tcatcatact
     2881 ttaaggtatt cttgacgaga tgttttctga taagatcacc atgcttattc aatgcatcac
     2941 gtaagtccat taccactatg ccctgttctg acatctgttc cgttatatgt aaacgaacta
     3001 tgtatgaacc gattcttaaa acgctggtct ctttttcctc ttctttttct aattctccga
     3061 ttctctctat tgtgtcctgg tttggttcaa attgcttgtg tgtttgcgga atatgaactt
     3121 gttctggatg gagtctttta gcgtcagaat attttgaata tagaggggag gtttcgaatg
     3181 gcaagctatt gtatttagaa aaagcagtct ctctcatttc agacatccat gcaggttctg
     3241 aattttctcg actgatattc ttgacataat taccgtctac ttgtgacagt gaggtagaag
     3301 tagaagtagt agacattcta tttgagatag aatagcagga tgtattatct acctttctat
     3361 tccatgactg tactggttaa gatcgctcca ttgagattta caaaaaattc taaccggttg
     3421 gaatgaaata ctaggaaaca ttcttacact attgctattg ttgcgctatg gttattttat
     3481 tactgttgtt ggtgctctgc tgcttttatt tcactaatac taattctaat tctgcttgtt
     3541 gtacgaatac tattagccta ctgagccttc catttccatt tttaccattc ggttgagttc
     3601 tactgcatat tccatcggca gctcttttgt gaatggttcc atgaatccac caactatgag
     3661 tgagagggca tctgattctg tgaagccacg actcattagg taaaagatct ggtcttggcc
     3721 tatcttacct acagttgctt catgagagat ggtggcatcg tcttcattta cttcgacata
     3781 tggataggtg tcagttctag agtccttatc aagaagaagt gcgtcacagc gtactgtgga
     3841 tttgacacca gtagcacctt ttgctacatg taggagacct ctataggttg tacgtccagt
     3901 gtctttgctg actgacttgc tggtaatacg tgatgtggta tcaggtgcta gatgtaccgc
     3961 cttggcacct gcatcttggt gttgaccttt acctgcaaaa gcgatagaga taacttcagc
     4021 atgtgctcct cgtccaagca tgtagacgcc aggatatttc atcgtcaact tgctgcctag
     4081 attgccatca atccactcta cggtggcctt ctcgtatgca taggctctct tggttacaag
     4141 gttatagacg tctttactcc aattctgtat ggtagtgtaa cggatcttgg ctcctttttt
     4201 ggctatcagt tcaactactg cggaatgtaa cgattctgta gcatagactg gagcagtaca
     4261 gccctcaatg tagtgaactt ctgcgccttc atcggctatg attagagtac gttcaaattg
     4321 accgatattt tcggcattga ttctaaagta ggcttgaagt gggagatcaa tcttgacgtt
     4381 tcgaggtacg taaatgaatg agccgccaga ccacacagca ctgttaaggg cggcaaattt
     4441 gttgtcttca ggtgggataa cttttccaaa atgtttcttc attaagtcag gatacttctt
     4501 gacagctgta tctgtatcta caaagatgac accttgcttc tccagatctt ctcttagatt
     4561 atggtagaca acttcagatt catactgggc accaacaccg gccaagaatt tgcgttctgc
     4621 ctcaggaatt cccaattttt caaatgtgtt cctcacagcc tctggtacgt catcccaatt
     4681 cttgctctgt ttttctgatg cctttgcata gtagtatata ttttgaaagt cgatgtgaga
     4741 gaggtcgcct ccccagttag gcataggttt gctcataaaa acgtcatatg accgcaatcg
     4801 aaaatcgcgc atccaatcag gttctgcctt gagacggctt atctcctcga ccgtgccacg
     4861 agacagaccc ttcttgctca gataaacgta aagctcagtt gaatccttaa agtcatattt
     4921 ggaataatcc atgttaaggt cttgaggacc ttgtttagtt ccttccgcct tttgagcctg
     4981 agcagtatta ttactattat ttttatgaat gttaatctct tcggttgtca ttgtgtacag
     5041 ctcgtcatca cgctatttaa acaccgtatt gtgctaattt tcattcattc acggatttga
     5101 gataaacaaa ggcttttagt gtatcaatag taatagagca cataagaatg tcatctgctg
     5161 gaggctttat aaaagcaata gaatcaggct caaagcacct acttataaag agatttaccc
     5221 tgcgctatcc cgaagagaag ctcaaatttg tgggagatgg gtatcaattt gatccaaaga
     5281 aaggt
//
LOCUS       DASSIK010000289         5328 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_757466, whole genome shotgun sequence.
ACCESSION   DASSIK010000289 DASSIK010000000
VERSION     DASSIK010000289.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5328)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5328)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5328
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_757466"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..262)
                     /locus_tag="VFI64_05435"
     CDS             complement(<1..262)
                     /locus_tag="VFI64_05435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242766.1"
                     /translation="MAEYSKQVSSSKRKLVMIFVIMMAVCLITDTGIIKTTDLVSKNV
                     MNYWQVPIFFVISFGLLVSQFFLLYFIRRRSFQIGGSKHVELN"
     gene            528..1217
                     /locus_tag="VFI64_05440"
     CDS             528..1217
                     /locus_tag="VFI64_05440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242767.1"
                     /translation="MAAITAMVLSAILLMTFAMIAITRAQQMPQVYAPDEKPFGLGYG
                     QWSVKWWQWSLGIPMADNPAGDETGEKCAQAQNNPNVWFLAGTFGGPVTRSCVIPQGK
                     AILLPVVNNECSYLEFPAYKTEAELTKCASSLIDKASNLKVTIDGVNIPDLNKYRFQS
                     SLYNFTMPSDNVLGLAPGTTDSSANGYWIMLKPLTKGTHTIKFGGSILDVSTTSNVNF
                     ATDATYHLTVQ"
     gene            complement(1227..1550)
                     /locus_tag="VFI64_05445"
     CDS             complement(1227..1550)
                     /locus_tag="VFI64_05445"
                     /inference="COORDINATES: protein motif:HMM:NF014470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HET7242768.1"
                     /translation="MLEPFTMQLAGMRGFEWIIICAIILALFFGVRKIPELARSFGRA
                     SGEFEKAKIEMRRELEGAKKTDTEERRKLESVADTLGIHYAGKTDDELRQAITKDIKK
                     DRVDL"
     gene            1885..2409
                     /locus_tag="VFI64_05450"
     CDS             1885..2409
                     /locus_tag="VFI64_05450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242769.1"
                     /translation="MTRVSKNIIIAVALVLAVGLISSQSTMNTFAISYVGNQYSSTQH
                     KINPTATTTNGNNNQPKSTLKTESQSATVETSSTVIKKFSHVENVKIGNVKSDSLNQV
                     SIDLSHINGNKGTKQIIVEVIKRNGNDQNIGSKLVDNNFKDSTSVKINLIKDPIQNDN
                     EGSNSVRVSVLPLT"
     gene            complement(3083..3835)
                     /gene="hsp20"
                     /locus_tag="VFI64_05455"
     CDS             complement(3083..3835)
                     /gene="hsp20"
                     /locus_tag="VFI64_05455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaeal heat shock protein Hsp20"
                     /protein_id="HET7242770.1"
                     /translation="MNLTNSKCILPGGRSIKASDEVKIKILNNLVDNKICDKKMSITP
                     DEWFDRFFGNFPFGKRGRRSYFDDMFGGFDRMRKEMEREFEESFKDLETKTPKELIRE
                     YETPEGGKVREIGPFVYGYSMTIGPDGKPRVKEFGNVKSPLSGSRGFMNTPMISSERE
                     PLSDVSITDKEVKVVIEMPGVPKDKIKLNAYQDKLEITSQDPERKYHEIVEIPPQADI
                     ETIRSSYNNGILEIVFKKKDDRGSKGKEIRIE"
     gene            complement(4116..4991)
                     /gene="tfb"
                     /locus_tag="VFI64_05460"
     CDS             complement(4116..4991)
                     /gene="tfb"
                     /locus_tag="VFI64_05460"
                     /inference="COORDINATES: protein motif:HMM:NF012600.4"
                     /note="stabilizes TBP binding to an archaeal box-A
                     promoter; responsible for recruiting RNA polymerase II to
                     the pre-initiation complex; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription initiation factor IIB"
                     /protein_id="HET7242771.1"
                     /translation="MVTDFESGEIVCTRCGTVFPGQVLDARRELVENSISRLSGVGPK
                     SSLAMHDMNLSTMIGKSKRDSSGQVINSNNQAKMTRLRTWDMRTQFRDSSFRNFRIAF
                     SLLNNLKYKLALPDSVIERTAYTYRKIEHKGLVRGRSIPSVLTACLYLTCRESAIPRT
                     IDEIQEASNVKRKQIAREYREIVKALELNVPPVNYFQCLEKISNSLQFDGKITRDAIT
                     LMQNISNLGISAGKDPMGLAAAVLYILSQTEGKTIKQADIANAAGITDVTLRARTKEV
                     KNKLAHQRPKSSVIL"
BASE COUNT         1544 a         1087 c          943 g         1754 t
ORIGIN      
        1 tattgagctc aacgtgtttg cttcccccaa tttggaagct ccttcttcgg atgaaataga
       61 gtaaaaagaa ctgagacact agtagaccaa aagatatgac gaaaaaaatc ggaacctgcc
      121 aataattcat tacgttcttg cttaccaaat ctgtagtctt aataattcca gtatcggtga
      181 ttaagcaaac tgccatcata attacaaaaa tcattactaa ctttctttta cttgaggaaa
      241 cttgttttga gtattcagcc attgcctgac cctgtcaatt ttctaatttt tatttctctg
      301 cacttgcaga acaagtcgtt actcatgggg attttcatgg taattattat atcaaccatt
      361 agctgacact acaataaata aaatgtggta aaatcgtcgg ttactcgaat tcctctgtgt
      421 ttttctcatt tctatcatat caacttcgca cgcgccagac taaagtagag cttgcttcaa
      481 ttttgaataa tagaactatt aatatcctag tgctaaatat ctagtatgtg gctgcgataa
      541 cagctatggt tctttcagct attcttttaa tgacatttgc aatgattgct ataactcgtg
      601 ctcaacaaat gcctcaagtg tatgccccag atgaaaaacc ttttggcctt ggttatggtc
      661 agtggagcgt caagtggtgg cagtggtcac ttggaattcc tatggccgat aaccctgcag
      721 gagatgagac tggcgaaaaa tgcgcacagg ctcaaaataa cccaaacgtt tggtttttgg
      781 ctggaacttt tggtggcccg gtcacccgca gctgtgtcat accacaggga aaagcaattc
      841 ttctgccagt agtcaataac gaatgttctt acctcgaatt tccggcttac aagacggaag
      901 cagagttgac taagtgtgcc tcatctttaa tagataaagc atcaaaccta aaagttacta
      961 ttgatggtgt taacatacca gatctgaata aatatcgatt ccaatcctca ctttacaact
     1021 tcaccatgcc gtctgataat gtcttggggc tagcgcctgg aactactgat tcgagtgcta
     1081 atggatattg gataatgcta aagcctttga ctaaggggac acacacaatt aaatttggtg
     1141 gttctatatt ggacgtttct actactagta acgttaactt cgcgactgat gcaacatacc
     1201 atctgacagt acagtagttc atttaactac aagtctactc tgtctttttt gatatcctta
     1261 gttatagcct gtcgaagctc atcatcagtt ttgccagcgt aatggattcc caatgtgtcg
     1321 gcaactgact cgagttttcg tctttcttca gtatcggttt tttttgcccc ttcaagttct
     1381 ctgcgcattt cgattttagc cttctcaaat tcgcctgatg ctctaccaaa cgaacgagcc
     1441 aattctggaa ttttccttac accgaaaaag agagcaagaa ttattgcaca aattattatc
     1501 cattcaaacc cccgcatacc tgctagttgc attgtaaacg gttctagcaa ctggatataa
     1561 gttacgctaa ttcgtgattt aaactaatgg acgaaacttg gaatgcctaa ggaaattcat
     1621 ttgtgttaaa ttgaattcaa taattttcat aaattgatgg ttaacactta caacaatggt
     1681 tatggtaata tcctttcata ccactggctg aaagttaagg gctgttctgt tttcaacgga
     1741 actcaattgc taatacataa ttgaaaaaac ggttaactaa attaattgac attgttccgg
     1801 aacaccttat atctagttat ggtaaggata gaaaggtgaa aaagtttaag gaattattta
     1861 tttgacattg gaaaagcgct caaggtgacc agagttagca aaaatattat tatagctgtc
     1921 gcccttgttc tagcggtagg cctaatctcg agccagtcaa cgatgaatac atttgccatt
     1981 tcttatgtcg gaaatcaata tagttccacc cagcacaaaa ttaacccaac agcaacgact
     2041 acaaatggga ataataacca acccaaatca actctaaaaa cagagagtca atcagcaacc
     2101 gttgaaacta gtagtacggt cataaaaaag tttagtcacg tagaaaatgt taagattgga
     2161 aatgtaaaga gtgactcact caatcaggta tcaattgact taagccatat aaatggcaat
     2221 aaaggaacaa agcaaattat cgtcgaagta atcaagagga atggcaatga tcaaaatata
     2281 ggaagtaaat tagtcgacaa caacttcaag gattcgacta gcgtgaaaat taatttgatt
     2341 aaagatccaa tacaaaacga caatgaagga agtaactctg tgagagtgtc cgtactgcct
     2401 ttaacttaaa atgcattcag ccagggatgc ttaatctctt ctttttttaa ttatacgata
     2461 tttgatgacc gtgtttgatt gttggattag aaaagttaca tattcatttg ctgatccgta
     2521 ctaaagtcta tgtcgagata agaaagtcat tttaactctt cttgctaggc acaatctgaa
     2581 ttaagattta atggattgca aagattaaca aagttcagga accaataata cttcaattct
     2641 agaccatgga tttacccttt gttcatgggg gaatgcggat tggaggattt gtcaattttc
     2701 ctcctttccg ttgttttatc tagaattatt actagttact ctgcttggaa aactttgatg
     2761 gttgtgatgg attaacaaag ttaaggaagc attaaaactt catttgaaca cattgtattt
     2821 actgtcgtca taagtacatt ccggaaagga ggatattggt tccatcatca ttctctcccc
     2881 tcctttccgt ttattcgatt agctctcaca accgaaaacg tcgttgtccc tgtccatctc
     2941 aaatccaccc gggtcagacc cactgacggt aaatctctgc tgggaaatgt caggacaatt
     3001 caagttgggt tgacgagagg caagggaggt gtttacaaca agacctgaag aaaagaatgc
     3061 gacaagaccg catctattat tgttattcta tcctgatttc ttttcctttt gatcctctat
     3121 cgtctttctt cttgaatact atttcaagaa tgccgttgtt gtaactagat ctaatagttt
     3181 caatatctgc ttgaggcggt atttcgacta tttcgtgata ttttctttca ggatcttggc
     3241 tagtaatttc cagtttatcc tgatatgcgt taagtttgat cttatcttta ggaactccag
     3301 gcatctctat cacgactttc acttccttat cggttatcga tacgtctgac agtggctccc
     3361 tctcggaaga gatcataggt gtgttcataa agcctcgact cccacttagt ggagatttta
     3421 catttccaaa ttctttaact ctcggcttgc cgtcgggtcc aattgtcatt gaatatccat
     3481 acacgaaagg ccctatctct cttacctttc ctccttctgg cgtttcatat tctctgatca
     3541 gttcttttgg agtcttcgtt tccaaatctt taaaagattc ttcaaactcc ctctccattt
     3601 cttttctcat tcgatcaaat cctccaaaca tgtcatcaaa ataactgcga cgtcctcttt
     3661 ttccgaatgg gaagttccca aagaatctat caaaccactc atctggtgta atactcattt
     3721 ttttatcaca tatcttattg tctaccaaat tatttaaaat tttaatttta acttcgtccg
     3781 atgcttttat agatcgacca ccaggcaaaa tgcattttga gttggttagg ttcaatattt
     3841 acatcgtctt tttttgtaaa ttccatatgt acacttccgt ctactacccg aaaccgaatt
     3901 ttctgcaaga gctgaatgct cggttttgtt gtattctttt cttttgtcaa gacattttct
     3961 tgtgagtata aatccagtaa taggaaatca aaaaagagtt gtcaaagaaa accagaaaac
     4021 gttagaaaaa ttctagattc acttactgca tttgggttac tgcacttatc agtgcaatct
     4081 ttacaaatgc gttcaatcca ctcagatcat aatgctcaaa gtattactga actctttggt
     4141 ctttggtgtg ccagcttatt cttaacttcc tttgttctgg ctctaagcgt aacatctgta
     4201 attcccgccg cgtttgcaat gtctgcctgt tttatcgttt taccctcagt ctgtgacagg
     4261 atataaagta ctgccgctgc tagtcccatt ggatccttgc cagcggaaat ccctaggttt
     4321 gagatatttt gcatcaatgt tattgcgtct cttgttatct ttccatcaaa ttgaaggctg
     4381 tttgatattt tttccagaca ttggaaataa ttaacgggag gaacattaag ctccaatgcc
     4441 ttcacgatct ctctatactc ccttgcaatc tgcttccttt tcacgttgct ggcttcttga
     4501 atctcatcta tggtccttgg aatggccgat tccctacagg tcaagtaaag acaggctgta
     4561 agaactgaag gaatggacct accgcgcaca agccctttat gttcaatttt cctgtaggtg
     4621 taagcagtcc tctcaatcac agaatcaggt aaggccaatt tatacttcaa attgttcaaa
     4681 agagagaaag caattctgaa attcctgaat gagctgtccc tgaactgagt cctcatgtcc
     4741 catgttctga gcctagtcat ttttgcttga ttgtttgagt taatcacttg gccagatgaa
     4801 tccctcttgg atttgccaat catggtggag aggttcatgt catgcattgc taatgatgac
     4861 ttgggtccca ctcccgatag tctgctaata gaattctcta ctaactctct tcttgcgtct
     4921 agcacctgtc ctgggaagac cgttccacag cgagtacaga ctatttctcc agattcgaag
     4981 tccgtgacca ttttgtcttc caaattacat gttgaacata tgattaaatt tttcatccta
     5041 actttaatta attgtcggaa tacacctaga tatgatctca aattcaatat tttctttatt
     5101 ggctttcata gatatctaaa ccagcttttg ggtgaatttc gaaataggat tccacttggc
     5161 atagacgaag ttaataaatt cattgctcat ccaatatatt atcgaccaca atctatgtca
     5221 tgattattgt ttttggtatc aattaacttc catgttgtct tcccaataat aacatacgtc
     5281 gagcacaaca ctggcagttt tgatttagat ttgtttggat gatgtgac
//
LOCUS       DASSIK010000290         3686 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1061390, whole genome shotgun sequence.
ACCESSION   DASSIK010000290 DASSIK010000000
VERSION     DASSIK010000290.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3686)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3686)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3686
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1061390"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..737)
                     /locus_tag="VFI64_05465"
     CDS             complement(<1..737)
                     /locus_tag="VFI64_05465"
                     /inference="COORDINATES: protein motif:HMM:NF014103.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242772.1"
                     /translation="MLSEISEIIEGDTRILVPSASLTEKIPSKTPAFFNPVAKWNRDI
                     SVLAYKTFSTLKTKDCLSFADCLSGVGARGLRVGVEVPSVESVYMNDINPIALEFARK
                     SAELNSIQGKCYFHRSEVCSFLQSNAHCSQRNRYDIVDLDPFGSPAPYLDCVLRAVND
                     RGMISITATDTAVLCGVYPKVCYRRYHGYPIRSEYTNEIGIRLLISLIAFTAARLDLN
                     ILPLFSHTNLHYMRTYVRISVSNSEAN"
     gene            817..1527
                     /gene="rnhB"
                     /locus_tag="VFI64_05470"
     CDS             817..1527
                     /gene="rnhB"
                     /locus_tag="VFI64_05470"
                     /inference="COORDINATES: protein motif:HMM:TIGR00729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HET7242773.1"
                     /translation="MDKWKGKNHTRFPARDLLIGGVDEAGRGSLVGPLIVVGISVRFS
                     QLDELSKIGIKDSKLLTPLSRRRMLSSMMDYVESLCICKLSPTDVDFGVLFSSLNVLE
                     AQAMAAIIEDIVPHIAYIDSCDVNPVRYGERVAGFLSTNRPKKIISSHHAEATSLVVA
                     AASILAKVTRDYEITRIREQYGEIGSGYPSDRKTVEFIKNWIVEKKVLPPFVRKSWKP
                     MKALLNREQCITLDQFVL"
     gene            complement(1512..2234)
                     /locus_tag="VFI64_05475"
     CDS             complement(1512..2234)
                     /locus_tag="VFI64_05475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibrillarin-like rRNA/tRNA
                     2'-O-methyltransferase"
                     /protein_id="HET7242774.1"
                     /translation="MTVGKRRKDTIREEIGLEDESISNITLDGRQHLATLNLIRGNTV
                     YGERLVVKKGNEYRIWDPFRSKLAAALTKGLKNFHLPVRSNVLYLGASTGTTVSHLSD
                     IVGQIGKIFAIESSSRVARELIFNVASKRQNVTPIIADARKPRSYFSVFDTIDLVYCD
                     IAQPDQTLIAIDNCRVYLKTGGILLLVIKTRSIDVTMEPRKVIKQEVKKLEENSFVVT
                     QRVDLDPFDKDHAMVYAIYNTN"
     gene            complement(2167..3441)
                     /locus_tag="VFI64_05480"
     CDS             complement(2167..3441)
                     /locus_tag="VFI64_05480"
                     /inference="COORDINATES: protein motif:HMM:NF013922.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242775.1"
                     /translation="MDKSADVLLFEVGLVVLDDVGKLIHSRKFVQPSTAYHSLSLREN
                     RELTEILPLLRKFYSVRVSHSILLDILGKEGFRVELLAESEQDALNKNKLDLVTKYGL
                     CENRIEAIKELQQFATDYSSIRIKLTSESLDLHVGQAVNGLDEIDETINTIGTRMREW
                     YGLHFPELDNLLQNVTTYAFIVKSAGPRENITKDILFQADLQENKIQLIMNMASKSRG
                     GDLAAESSQILQKLASEVIELSKLREALSEMIETVMEDIAPNIKKMLTPVIAARLIAR
                     AGSLRKLAFLPASTIQILGAEKALFRALKTGARPPKHGLLFQHPAVHSAPKWQRGRIA
                     RALASKIAIFARIDLYRHAPAEDDLMSRLNKRIETIQKSPQKFGSKYDTGLSSDIKRR
                     KDGNFGMRAKGDRWKKKKGYDKRRNRFGRREH"
     gene            complement(3536..3661)
                     /locus_tag="VFI64_05485"
     CDS             complement(3536..3661)
                     /locus_tag="VFI64_05485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242776.1"
                     /translation="MSEYEGGTFRCKICGKEFLTKFEGDSHYKEEHDEDHADVGE"
BASE COUNT         1044 a          785 c          693 g         1164 t
ORIGIN      
        1 tcatttgctt cagaattgct gacacttatt cttacgtatg ttctcatata atgtaaattg
       61 gtgtgactaa acaacggtaa aatgtttaga tcgagcctag ccgcagtaaa tgctatcaat
      121 gatatgagta gcctaatccc aatttcgttg gtgtattcac tcctgattgg atatccatga
      181 taccgacgat aacagacttt tggataaact ccacagagaa cagccgtatc cgttgcagtg
      241 attgatatca tacccctgtc attgacagca cgcaaaacac agtccaaata cggagctgga
      301 ctcccaaatg ggtccaagtc tactatatcg tatctattcc tttgactaca atgagcattt
      361 gactgtagaa aactgcatac ttcgctccta tgaaaataac attttccttg gattgaattt
      421 aattcagctg actttcttgc aaattccaat gcaattggat tgatatcatt catgtatact
      481 gattctaccg atggaacttc gacaccgacg cgtagacctc tggcacctac tccggataga
      541 caatctgcaa aggataagca atcctttgtt ttcaaagtgg aaaaggtttt gtaagcaagg
      601 accgagatat ctctgttcca cttcgccacg gggttgaaaa acgctggagt tttggaaggg
      661 attttttccg tcagtgatgc actcggaaca agaattcgag tatcaccttc aattatttcg
      721 gatatttcag acagcaacga ttagtttcct accaactgcc gggttagtaa ggttatcatt
      781 taaaaaagga ggccgaaata agatcaaagt agaaatttgg ataagtggaa aggaaaaaac
      841 catactaggt ttcctgcgag agatcttctc ataggaggag tggatgaagc aggacgagga
      901 tcattagtgg gtcctttaat tgttgtagga attagtgtca gattctctca attagacgag
      961 ctcagcaaaa tcggaatcaa agattccaaa ttgttgacac cacttagtcg tcgtcgcatg
     1021 ctgtcaagta tgatggatta cgttgaatca ttatgcatat gcaaactgag tccaacagat
     1081 gtcgattttg gagtgctatt tagcagccta aatgtattgg aggcccaagc aatggcagcc
     1141 attattgaag atattgtccc tcatatagca tacattgatt cctgtgatgt aaatccagtg
     1201 cggtatgggg agcgggttgc aggatttctg tctacaaata ggcccaaaaa gattatctcc
     1261 tcacaccatg cggaagcaac aagtctcgtt gtggccgctg catcgattct agctaaagtt
     1321 actcgtgatt acgaaattac aagaatccgt gagcaatatg gtgaaatagg tagtggttac
     1381 ccttcagata gaaaaaccgt agaattcata aagaattgga tcgttgaaaa aaaagttctt
     1441 ccgcctttcg tcagaaaatc atggaagcca atgaaagcgt tactcaatag agaacaatgt
     1501 ataactttgg atcaatttgt attgtaaatt gcatatacca ttgcgtggtc tttatcaaat
     1561 ggatcaaggt cgaccctctg cgtcacaaca aaagaattct cttccagctt cttaacttcc
     1621 tgtttgatca cctttctagg ttccatcgtc acatcgatgc ttcttgtttt aataactaat
     1681 aacaaaatgc cacctgtttt gagatacact ctacaattat caattgcaat aagtgtttga
     1741 tctggctgtg caatatcaca ataaactaaa tcaatcgtgt caaatacgga aaaatagctt
     1801 ctcggttttc tcgcatctgc tataattgga gtaacattct gtcttttaga tgcaacatta
     1861 aaaataagtt ctctagctac tctggatgag gattctatgg cgaatatttt tcctatctgg
     1921 ccgacgatgt cggatagatg actaacagta gttccagtag atgccccaag atataaaaca
     1981 ttgctacgta cagggagatg aaaattctta aggcctttcg taagtgccgc tgccaacttg
     2041 ctcctaaagg ggtcccatat tctatattcg ttacctttct tgacaaccaa cctttcaccg
     2101 tatacggtat tccccctgat cagatttaga gttgcaagat gttgacgacc atctaaagtt
     2161 atattgctaa tgctctcgtc ttccaaaccg atttcttctc ttatcgtatc ctttcttctt
     2221 tttccaacgg tcacctttgg ccctcatgcc aaaatttcca tcctttcttc gtttaatatc
     2281 agagctaagg cccgtatcat attttgaccc gaatttttga gggctttttt ggatggtttc
     2341 gatcctcttg ttaagacgcg acattaggtc gtcctcagcc ggcgcgtggc gatacagatc
     2401 aatcctcgca aatatagcta tctttgatgc taatgctctt gctatcctac ccctctgcca
     2461 ttttggtgcc gaatgaactg cgggatgttg gaacaacaac ccgtgtttag gtggcctcgc
     2521 acccgtcttc agtgctctga acagggcctt ctcagctcct agaatctgta tagtacttgc
     2581 aggaaggaaa gcaagcttcc ttaggctccc tgcccttgct atgagccttg ctgctattac
     2641 tggtgtaagc attttcttga tgttaggtgc gatatcctcc attaccgtct ctatcatttc
     2701 tgataaggcc tctctaagtt tagataactc gataacttcg gatgcaagtt tttgaagtat
     2761 ttggctactc tcggctgcta aatcaccacc gcgactcttc gatgccatat tcattatcaa
     2821 ttgaatttta ttctcttgta aatctgcttg aaaaagaata tcttttgtta tattctccct
     2881 gggtccagca ctcttgacta taaatgcata tgtagttaca ttctgaagca ggttgtcaag
     2941 ctcagggaag tgaagaccat accattctcg cattctggtt cctatagtat taattgtttc
     3001 atcgatttca tccaatccat ttacagcctg acctacgtga agatctaggc tctctgaagt
     3061 cagttttatc ctaatagaag aatagtcagt tgcaaattgc tgaagttctt ttattgcttc
     3121 aatacgattt tcgcacagtc cgtattttgt aactaagtcg agcttgtttt tgttaagagc
     3181 gtcttgttcc gattcagcga gaagttctac tctaaatcct tctttgccaa ggatatctaa
     3241 aagtatcgaa tggcttactc taacggagta aaatttacgt aaaagaggta aaatttctgt
     3301 gagttctctg ttttcacgta gcgacaatga atggtaagct gtagacggct gtacaaattt
     3361 tcttgaatga attagtttgc cgacatcgtc taaaacaact aaccccactt caaatagtag
     3421 tacatctgct gatttatcca atgcagtcca gatttgaaca tgacgcgctc attaaaaaat
     3481 ctaacatcaa attttaaatt aatacacgat tccaaatcct tgcattgtct ggattttatt
     3541 ctccaacatc tgcatgatct tcatcatgtt cctctttgta atggctatcc ccctcgaact
     3601 ttgttaagaa ttcctttcca catattttgc atctaaatgt accaccctca tattctgaca
     3661 cggcaatcac ctcttaaccc agataa
//
LOCUS       DASSIK010000291         2314 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1455252, whole genome shotgun sequence.
ACCESSION   DASSIK010000291 DASSIK010000000
VERSION     DASSIK010000291.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2314)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2314)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2314
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1455252"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1060)
                     /locus_tag="VFI64_05490"
     CDS             complement(<1..1060)
                     /locus_tag="VFI64_05490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242777.1"
                     /translation="MTKWNEVLLASILLSFLFIIPSLCKIAFSDGLFEENLPPASVGD
                     RQAGLYVKINPPILTSDSKQDAYVLFRLFDEKTNQTIQHTTYQISITKGGSPNQRPIV
                     NDFFHAHNGVLKLKIEPTPGELSILGDRDPFQNALVADPGGNVVIRGPLLLDGGLYHF
                     HIEIFGIDNDRNIFKPEDAPKFDSYLSVGDVFKENLTYNGKEYNATLISYYDKIRNFN
                     FEASKLVASWAMPFDWNLSRIKAVNIFVHEELKVPKSFTEFSNTTVFNATVNGQPVSG
                     RALAIDPFSSDNALIIHYLLTKNDILKLAGMKEVVDDSNNTMKFTLMPISHASKQSST
                     DITTDFGAIHISLNWSPNP"
     gene            1204..1776
                     /locus_tag="VFI64_05495"
     CDS             1204..1776
                     /locus_tag="VFI64_05495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242778.1"
                     /translation="MKSFTKTAEGLNFLKISCLVVLTLNLSLDFIWASAAEMGDGHNM
                     PTATLDNRQAALMFNIGPSPVIAEKNVDFDIKLMDNKTGNNISHVTLLVTITKGGQRV
                     FTESLHTHDGNLKIQFVPTAANPYKVNANYDGLSASYVSDFGNPIKVSGPIFVMRGNY
                     TVSFEITGVDFDNVFLPTPIKFDFSIPVAG"
     gene            1885..>2314
                     /locus_tag="VFI64_05500"
     CDS             1885..>2314
                     /locus_tag="VFI64_05500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242779.1"
                     /translation="MATKASAKFNNVDFNLFSTVLECCRKKAEIKYINDKKYHIAGKS
                     VFGGRTNKDGINFQIIFSDDKSTMEIYDYSKRGTDRRFIDSMFELLVPLLGDNIQMNL
                     EDLNECGVCRKKLRVGTAKFVPSVGWGTCQELCESCYTLLL"
BASE COUNT          702 a          385 c          490 g          737 t
ORIGIN      
        1 gtgggtttgg tgaccagttg agggatatat gaatcgctcc aaagtcggta gttatgtctg
       61 tagatgattg cttggaggcg tgagatatag gcatgagtgt aaatttcatt gtattattac
      121 tatcatccac aacttccttc attccggcaa gcttgagtat gtcgtttttg gtcaaaagat
      181 aatgtattat taatgcatta tctgaagaaa atggatctat agcaagggcc ctcccgctta
      241 ctggttgacc gttgactgta gcattaaata cagtggtgtt actgaattcg gtaaacgatt
      301 tcggtacctt aagttcttca tgcacaaaaa tgttaacagc tttgatcctg gacaaattcc
      361 aatcaaatgg catcgcccat gaagctacaa gctttgaagc ctcaaagttg aaattccgaa
      421 ttttatcata ataggaaata agggtggcat tgtattcctt gccgttgtag gttagattct
      481 ctttaaatac gtcaccgaca ctaagataag aatcaaattt gggcgcatct tcaggtttga
      541 aaatatttct atcgttatct ataccgaata tctcaatatg aaagtgatat aatccaccat
      601 ctaatagtag tgggccgcgt atgactacat tacctccagg atcggcgacc agtgcattct
      661 gaaacggatc tcggtcacca agtatggaaa gctcccctgg cgtgggttct atttttagct
      721 tgagcacccc attatgcgca tggaaaaaat catttactat gggtcgttga ttaggtgaac
      781 ctccttttgt tatacttatt tgataggtgg tatgttgaat ggtttggttt gtcttttcgt
      841 caaataacct gaaaagtaca taggcatctt gcttactatc tgaggtcaaa ataggtggat
      901 ttatttttac atacaaacct gcttgcctgt caccaactga tgcgggaggg agattctctt
      961 cgaataaacc gtcagaaaat gctattttac ataagctcgg aataataaat aagaatgata
     1021 acaatatgct agcaagtaag acttcgttcc atttagtcat caagaatgcc tgatatggaa
     1081 tcagatgatt acattattta tagtttggat ttgttatagc gtgacatttt cttgtcatcg
     1141 attgtatccg aaagagtttt ggttagttag ataaattgaa gacgtgttgt gtgaaactgt
     1201 atcatgaaat cattcactaa gacggccgaa gggttgaact tcctcaaaat ttcgtgtctg
     1261 gtcgttttaa ctctgaatct ttcacttgat tttatttggg cgtcagcggc tgagatgggt
     1321 gatggtcata acatgccgac ggccacttta gataacagac aagctgcgct gatgtttaat
     1381 attggtccat caccagttat tgcagaaaag aatgtcgatt ttgatatcaa attgatggat
     1441 aataaaacag gaaataatat ttctcatgtg acgttattgg ttacgatcac taaaggcgga
     1501 caaagggtat ttaccgagtc gttgcatacc catgatggaa acctgaaaat acaatttgtt
     1561 ccaactgcag cgaacccata caaggtcaat gcaaattacg atggtctttc ggccagttat
     1621 gtttctgact tcggaaatcc aataaaagtg agtggcccaa tatttgtaat gagggggaac
     1681 tatacggttt catttgaaat aacaggagtt gatttcgata atgtatttct accaactcca
     1741 attaagtttg atttctcaat ccctgtagct ggctgattga ttaatgataa agttgtttga
     1801 attcatcgat attcgtttta attgaattaa atagaattat gccatggaga taaatttttt
     1861 atcgaaggaa attccttagt tgatgtggcc accaaggctt ctgcaaagtt caataacgtg
     1921 gatttcaatc tgttttctac tgtattagaa tgttgtagaa aaaaggctga aattaaatac
     1981 atcaatgata aaaaatatca tattgctggg aagtccgtct ttggaggccg cacgaataaa
     2041 gacgggatca attttcaaat tatctttagt gatgataaat caactatgga gatatacgat
     2101 tattccaaac gcggaactga cagacggttc atagacagta tgtttgaact tcttgttcca
     2161 cttttgggag ataacatcca gatgaacttg gaggacctaa acgaatgtgg agtatgtaga
     2221 aagaagctga gggtaggaac tgcaaaattt gtgccgtcag ttgggtgggg aacatgtcaa
     2281 gaactatgtg aatcatgcta cacattatta ttag
//
LOCUS       DASSIK010000292         2087 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1245114, whole genome shotgun sequence.
ACCESSION   DASSIK010000292 DASSIK010000000
VERSION     DASSIK010000292.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2087)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2087)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2087
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1245114"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(350..1663)
                     /locus_tag="VFI64_05505"
     CDS             complement(350..1663)
                     /locus_tag="VFI64_05505"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HET7242780.1"
                     /translation="MIISGITFNKGPFSQAFAASGIKIAAVGNWGCTSNSQATVNNIN
                     SKNPELVLGLGDYSYESTPDCWFNEIKAFDSKMKISIGNHDVMTKKLLNSYLNHFSLS
                     NQYYSFDFQNVHVLTMATELEWEAGSKQYKFVKNDLEQVSKDPNIKWIIVTMHKPIYT
                     SPNGCSASSCEGSKTLRDTYHPLFDNYGVDLVLEAHMHSYQRSYPIKYNVDNPPKPII
                     TSSDKNNYNNPSGEIFAIVATGGINFHSLAGKAPFTATQQDSKFGILEMQFSNNKLDA
                     KFVSNAGSTMDHFTVTKTTKKPTTLTPTSTPTITKPAGTPKVVDKKSEDSQKLKNTTK
                     LNENQPATDKSTKKAKNTSNINETKSIDLKDKMKTEKTKTQTKNQNSVLSSGTNLLQS
                     PEENIKSSASDTEMSNPSKSNEIGINDNVPNSHTLDPFAPLSPFP"
BASE COUNT          591 a          369 c          394 g          733 t
ORIGIN      
        1 gaaggtgcga atgaagtact agagctcaag atctcagctg acatacttgg agagggtttt
       61 agatcatatt agtgtttaga gtatcgtatt taattatagt atcagcttat taattatccc
      121 taaacaggag acgacagttg ccatcctatc acatcggcct agagatttga gcttataagt
      181 aaaaagggct caaggaactt gtacactact tctccggaca caatttgata aaattttaca
      241 atcttagtgt aggtacagac cccaaagggt ttgttcgtac tactattacc taccaacgag
      301 ccaattgtat taggtacttt agctcaattt tggcaacaat gaggcagcat tatggaaatg
      361 gagatagggg cgcaaagggg tctaatgtat gagaattagg gacgttgtcg tttattccaa
      421 tttcattact cttacttgga ttcgacatct ctgtatcgga tgcggaagac ttgatatttt
      481 cttctggcga ctggagcagg tttgttccac ttgatagcac tgagttttga ttcttcgtct
      541 gggtttttgt tttttctgtt ttcatcttgt cttttaaatc aatggatttg gtttcgttta
      601 tattagatgt atttttggcc tttttcgtac tcttatcagt ggcaggttgg ttttcattca
      661 atttcgttgt attttttaat ttttgtgaat cttctgattt tttatcgacg actttaggag
      721 tacctgctgg cttggtaata gttggagtgg aagttggagt taatgttgtg ggttttttcg
      781 tagtcttcgt gacggtaaag tgatccatgg tggagcccgc attagaaacg aattttgcgt
      841 caagtttatt gttagaaaat tgcatctcca atatgccgaa ctttgaatct tgttgagtag
      901 ctgtaaaagg agcctttcca gctagactat gaaagtttat tccacctgta gcgacgatgg
      961 caaaaatctc accacttgga ttattgtaat tatttttgtc cgaacttgtt ataattggtt
     1021 taggtggatt atcaacatta tacttgatag gataggatct ctggtaagaa tgcatatgtg
     1081 cttccagtac taaatccaca ccatagttgt caaatagagg atgatatgtg tctctcaatg
     1141 ttttgctacc ttcacaagat gatgctgaac agccatttgg tgatgtatat atcggcttat
     1201 gcatcgttac gatgatccat ttgatatttg ggtccttgga aacttgttct aaatcatttt
     1261 tgacaaactt atactgcttc gaccctgctt cccattctag ttcagttgcc attgtaagga
     1321 cgtgaacatt ctgaaaatca aatgaataat actgattaga aagactaaaa tggttcagat
     1381 aagaatttaa taatttcttg gtcatcacat catgattccc aatgctaatc ttcattttgc
     1441 tgtcaaacgc tttgatttca ttaaaccaac aatcgggcgt actttcatag gaataatccc
     1501 ccaggcccaa aaccagttca ggattcttgc tgtttatatt gttgacagtt gcctggctgt
     1561 ttgaagtaca accccaattg cctacagcgg ctatcttgat accagatgcc gcaaacgcct
     1621 gcgaaaaggg acctttgttg aatgttattc ccgatataat catagtaatt gtcaggatta
     1681 aacaagaaat aattcgcata ttgtaacata atctagtaac cttaactgtc ctcatccatg
     1741 atgaaatctt cagcttccat aataagccct cctccacaat cttatatttg acaattgtaa
     1801 atcatatatc aaattcatct tctaaattct gcttgtctat tctacctttg gtagattcaa
     1861 taataagatt gaatatcatc aattagtaac atgaatattc acgtactttc tattatcaat
     1921 taattattaa ttttggacta gtatttactt tttacttaat atccgaaaac aaacagatgt
     1981 atacctagtc attggcctct ttttcactag agcagcagat ctgatatgtt gatcactgaa
     2041 attcgatcaa gattaactgg gttggcagga atatacacga tccgatg
//
LOCUS       DASSIK010000293         2654 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1456000, whole genome shotgun sequence.
ACCESSION   DASSIK010000293 DASSIK010000000
VERSION     DASSIK010000293.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2654)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2654)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2654
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1456000"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1321..2592
                     /locus_tag="VFI64_05510"
     CDS             1321..2592
                     /locus_tag="VFI64_05510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242781.1"
                     /translation="MKTRLIPVTLICAILVTNVCILNNNVVNSVYAQTSKDIFRSKSD
                     HHILGHEGPPYLGVNIRGYYTSMPQSREGLKNPFPANYYENSLELLSKTNVIDHVRYR
                     FYWESYERDPGTFIKELEYIAKTADKYGIKVIYDNHQFHTSSWLSAGRGTGFPAYLFN
                     DPLLYKQASGGASKYSAAEKWWTNWWDRTIKSTNGTDGWTLQTEFLKKIVSTVDKHPS
                     TLGYEILSEPQVHSKDQWEKIGKFNTFMTDELRKVTNKALIYSMNVPLDQKNLIEVNS
                     QNMAKMVPKNKENVIFKMSMYGIPSGKYQTEKLQLILNASQIASVPLYIGEWNNVKRI
                     STVNEEGKLIWKISANLSDISQTDANMIVEKFKGLNIWGMAYWDWSFVPNEIKNFNLV
                     NITYDKASGEGDIHPTKYFDIMKKAYQNVYG"
BASE COUNT          909 a          443 c          490 g          812 t
ORIGIN      
        1 aaaggataat ttaaatctaa aagcagtctt gtccttctga atctacgttc acgtagctac
       61 agtttggtag gccatagcca ctcggaccaa tattgtagaa acaaaactat ccaatatcgc
      121 tctaatttcc tttgatggta gaagagattt ctcatgtctc tatctcgata taattccaat
      181 tcttacaagc ttttctagtt ttcttattga tccttcatag taaaatattc ctcattgtat
      241 tgttaattcg ggagatgaaa ttcattgggc agggagtcgg catgttggaa tgatcaaatg
      301 tacattctgc gtagagaatt taaatccggt ttatactatt tcgggataaa ggaatgatgg
      361 tatttcagga gttctccttt caaggtcgta aatcatcaat cttattaaat taatgttatt
      421 atgcttagta gtaaactgac taaccatatt actttcagat tttagagcct ccctccccct
      481 ttcgggtttg cttgattata ttttgataat gttatgcaag gacatatgga atcaacaaaa
      541 tttcaaaccc aaatggatga gctagaacaa gttatcttaa atgaaataag tgagaatgaa
      601 caagatatgc aaccttcaca tgctacatgg catcttgaca atctgctagt taaaaatcgg
      661 acattggatt gggttctata ccaaattcat agattacaaa aacaactaaa tgattactga
      721 tgagtacaat ctacatttgg tactaattta gtgaattgca ttttccaaga tccgcccgct
      781 aatctaccga attctttatt tttggtagac gaaagtactt tgtcaaatat agatggtact
      841 ggtaacgata cgtttctatt ttaaataact aagtcaattt ccacaaatct ttccgattct
      901 gtgatttgct tttcttatga aatgagattc gaatcgaaaa aagatcgaaa gtctgttgta
      961 attgatatcg tgaaaaaaat gcgaatttcc tgtcgtagaa attgcctttc ttcatgataa
     1021 gcgaacactg atgcaaatgg ctatgaaacg ttgagaataa ttaaagggaa taatgttaag
     1081 aagcttcaat atagcttagg aattaattat gatctcagta tatgcacaaa tttgaaaaat
     1141 ttttattagt ttcgataatt ggcggaataa ctagcggttt tctatttgct atgttctttt
     1201 cccctatagg atgattaacc aaataatgac cgaatttact ataccctctg tcgagttatt
     1261 aattaattga aacattggtt acctttaaaa tgccaatgga taaaagttcc tgatctgcca
     1321 atgaaaacga gacttattcc cgttactctt atttgcgcca tacttgttac aaacgtttgc
     1381 attcttaata ataatgttgt aaattcagtc tatgctcaga caagcaaaga tattttcaga
     1441 agtaaaagtg accatcatat tttaggtcat gaagggccac catacttggg cgtaaatata
     1501 cggggatact atactagcat gcctcagtca agagaaggat taaagaatcc atttcccgct
     1561 aattattatg aaaatagttt agagttactc tcaaaaacca atgttatcga tcatgtgcga
     1621 tatagatttt actgggaatc gtatgaaagg gatcctggta cattcattaa agaattggaa
     1681 tacatagcga aaacagcaga caaatacgga ataaaagtca tttatgataa tcatcagttc
     1741 cacacctctt cctggctcag tgctggacgt gggactggat tcccagcata tctcttcaac
     1801 gacccgctat tatacaagca ggccagtgga ggggcatcca agtactctgc tgcagagaaa
     1861 tggtggacta attggtggga caggacaatt aagagtacga atggtacaga tgggtggaca
     1921 cttcaaactg aatttttaaa aaagatagta agtactgttg ataagcatcc tagcacttta
     1981 ggttatgaaa ttctaagtga accacaagtg cacagtaaag atcagtggga aaaaataggt
     2041 aaattcaaca ctttcatgac agatgaactc cgaaaagtca caaacaaggc tttaatatac
     2101 agcatgaatg ttcctttaga tcaaaaaaat ctaatagaag ttaattccca gaacatggct
     2161 aaaatggttc caaaaaacaa agaaaatgta atattcaaga tgagcatgta tggaattcct
     2221 tcaggtaaat atcagactga gaagcttcaa ttgatcttga atgcaagcca aatagcgagt
     2281 gttccactat acattggaga atggaataat gtaaagcgaa ttagcactgt taatgaggaa
     2341 ggtaaactga tctggaagat aagtgccaat ctcagtgaca taagccagac agacgcaaac
     2401 atgatcgttg agaaattcaa ggggcttaac atatggggaa tggcttattg ggattggagc
     2461 tttgtcccta acgagatcaa gaactttaat ctagttaaca ttacgtacga caaagcgagt
     2521 ggagaaggag atatccaccc tactaaatat ttcgatataa tgaaaaaagc ttatcagaac
     2581 gtctatggat aacttgtcct gattcaacta aatcttttca aatgttccca tataaggaat
     2641 aactgcgtat gttt
//
LOCUS       DASSIK010000294         2651 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_351410, whole genome shotgun sequence.
ACCESSION   DASSIK010000294 DASSIK010000000
VERSION     DASSIK010000294.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2651)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2651)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2651
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_351410"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..408
                     /locus_tag="VFI64_05515"
     CDS             <1..408
                     /locus_tag="VFI64_05515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242782.1"
                     /translation="INCGLLESQDISAVLDQFFEKKDYSFNLYHTAKQFRLFADNKDA
                     YNVIDQAITKQFRHDTEKKLSKITISFSTGQQENLNSLLFTVSNIIYSTQIEIHSAFF
                     TSSEIVLILEDGNATELYDSLRKELTARNQNLT"
     gene            complement(437..1618)
                     /locus_tag="VFI64_05520"
     CDS             complement(437..1618)
                     /locus_tag="VFI64_05520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HET7242783.1"
                     /translation="MNRDNICALLTGIAVVSLIAGFAIYFNSPELNKSSSAQKSAGDF
                     LSSVSVDSATGKISKTQYTVDESQFRKAPEFADISGYINTNPIKLADLKGKVVLVDFW
                     TYSCINCIRTLPYLVDWNAKYADKGLVIVGVHTPEFEFEKNIDNVKAGVKKFGIKYPV
                     LQDNDKGTWDAYANSYWPRKYLIDSEGFIRYDHIGEGGYAETEKIIQTLLAERAVQQG
                     IRGFNFNSTTITNSSNIQNVDFSKVNSPELYFGYQFARAPLGSPQGFVQGQVVNYSIP
                     SSDLQPNAVYLQGLWKNNPDNLELAGDSGRIVLVYSAKSVNLVAGGTGNATVSEDGIK
                     PGSQRNSNSTGGSDLNENGLFKIDGQRLYNIADHADYGNHYIIIDAKGKGFQAYTFTF
                     G"
     gene            complement(1630..2394)
                     /locus_tag="VFI64_05525"
     CDS             complement(1630..2394)
                     /locus_tag="VFI64_05525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcdA"
                     /protein_id="HET7242784.1"
                     /translation="MVEVNVLVSALAGAGSFFSPCILPILPAFISYLSGSTLNELQNN
                     NAGATGRAVSIKKATRLNIFLNTVYFVLGFSLVFAVLGVVLNSILVTAGIGFQSTLAT
                     VGGIVIIAFGSYLILSTRLRKLNFEKRMTSLPKFKTSYITSFVFGAAFAAGWTPCVGP
                     ILGSTLTLAATAPGAAYNSLLAYSLGLGVPFLITGAFFSQATGIIRRMVKHLKYFNLA
                     MGGMLIILGILVFTNNLSLLGNFPLANQIINLERGI"
BASE COUNT          780 a          555 c          510 g          806 t
ORIGIN      
        1 ataaactgcg gtctgcttga atctcaggat atatcagctg tattagacca gttctttgaa
       61 aagaaggatt atagttttaa tctttaccat acggcaaaac agtttaggtt gtttgcagac
      121 aacaaagatg cttataatgt cattgaccaa gctattacga agcaatttcg tcatgacaca
      181 gaaaagaaac tttctaagat taccatttcc ttctcgactg gtcagcagga aaacctaaac
      241 agccttctat tcactgtctc caatatcata tacagcaccc aaattgaaat tcacagtgca
      301 ttctttactt ccagtgaaat agtattgatt ttagaagatg gaaatgctac agagttatac
      361 gattcattga gaaaagagtt aacagcacga aatcaaaatt tgacttgatt tccgaatcga
      421 ttgattgatt gtatctctag ccaaacgtaa atgtatatgc ctgaaaaccc ttgccctttg
      481 catcaatgat aatgtaatga tttccataat cagcatgatc tgcaatattg tatagtcttt
      541 gtccatctat cttaaaaagt ccattttcat ttagatcaga gccaccagtt gagtttgagt
      601 tgcgttgaga cccaggcttg atcccatcct ctgaaactgt ggcgttcccc gttccgccag
      661 ctactaaatt gactgatttt gctgaataca ctaggacgat tctcccagaa tctcctgcaa
      721 gttccaaatt atctggattg tttttccaca aaccttgcaa gtatactgcg tttggttgaa
      781 ggtccgaaga aggtattgaa taattcacta cctgtccttg aacaaatcct tgaggacttc
      841 ccagaggggc tctcgcaaac tggtatccaa agtacagctc tggtgaattg accttgctaa
      901 agtctacatt ttgaatgttt gaagagttag tgatggtggt agaattgaaa ttgaaacccc
      961 gaatgccctg ttgaactgcc ctctctgcaa gcagtgtctg gattattttc tccgtttcag
     1021 catatccacc ttcacctatg tggtcgtatc ttatgaatcc ctcactatca atgagatatt
     1081 tccttggcca gtaactattt gcgtatgcgt cccaagttcc cttatcatta tcctgaagga
     1141 ctggatattt tataccgaat ttctttaccc ctgctttaac gttgtctata ttcttttcaa
     1201 attcaaattc tggagtatgt actccaacta ttaccaaacc cttgtctgcg tactttgcgt
     1261 tccagtctac aaggtatgga agcgttctga tacaattaat gcaactatat gtccaaaaat
     1321 caaccagcac aactttaccc ttcaagtcag ccagctttat cgggttggtg tttatgtacc
     1381 cagatatgtc tgcaaattca ggagcttttc tgaactgcga ttcgtctact gtatattgtg
     1441 tctttgatat cttgccagtt gcgctgtcta cagaaactga agataagaaa tctcctgccg
     1501 atttttgtgc tgaagaggat ttattgagtt ctggactgtt aaaataaatc gcaaagccag
     1561 caatcaggct tacgacagct attcccgtga gaagagcaca gatgttatcg cgattcatat
     1621 cttattcagc taaattcctc tctccaaatt gattatctgg ttggcaagtg ggaagtttcc
     1681 caggaggctc aagttatttg tgaataccaa tatccccaga attattagca tgccgcccat
     1741 tgcaaggtta aagtacttta gatgcttcac catccttctt attattccag ttgcctgtga
     1801 gaagaacgct ccggttatga ggaatggtac tcccagacct aacgaataag ccagtaatga
     1861 attgtatgcg gctccgggtg cagtggcagc cagcgttagg gtgctgccca gtatcggtcc
     1921 tacacatggt gtccaacctg cagcgaaggc agcaccaaac acgaatgagg taatatagct
     1981 ggtcttaaat tttggaagtg aagtcattct cttctcgaaa ttaagttttc tcagtctagt
     2041 tgatagtatc aggtaggaac caaaggcaat gatcacgatg ccacccacag tggcaagtgt
     2101 actttggaat cctataccgg cagtcacaag gatgctattc aagaccacgc ctaataccgc
     2161 aaaaactaat gaaaatccaa gtacaaaata gacagtgttc aaaaagatgt tcaatctagt
     2221 tgctttcttg atactgactg cccggcctgt agcaccagca ttattattct ggagttcatt
     2281 taatgttgaa ccagaaagat aagaaatgaa agcgggtaaa atgggtagaa tgcagggcga
     2341 gaagaatgaa cctgctcctg caagcgcgga taccagtaca tttacttcta ccacaattat
     2401 tattttcctt cctaaatgca ttaatagttt tatccaaatt acctccagat taattcaata
     2461 tttacagaca tgaacgagaa ggatggcgaa tattttggtt agagatgtta ctcgttactc
     2521 ggtgatgaca tagcgaaaat aattaacgat tgtatgtcca aacgtaattt taattattca
     2581 atatctgcga ttaaaaaacg cccgatacag taaagcgacg tcgtgctgat ctgggtagga
     2641 tctaggccct t
//
LOCUS       DASSIK010000295         2045 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_551145, whole genome shotgun sequence.
ACCESSION   DASSIK010000295 DASSIK010000000
VERSION     DASSIK010000295.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2045)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2045)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2045
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_551145"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(226..1893)
                     /locus_tag="VFI64_05530"
     CDS             complement(226..1893)
                     /locus_tag="VFI64_05530"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: protein motif:HMM:NF006187.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HET7242785.1"
                     /translation="MKASDLFIRCLEAEGVDYIFGIPGEETSDLMMSLLDSRIKFILV
                     RHEQGAAFMADMYGRLTQKVGVCLSTLGPGATNLTTGVANANMDRSPILAITGQTDTD
                     FLHKEAHQNMDAVTMFKPITKWRWSVRNADSIPEIVRRGFKIALEEKAGAVHIELPQD
                     IAKMESEIKPIKAQQVLRSRPNKDLIEEAAELLLASKTPILLVGNGCIRGRASLSVRK
                     FVEKTGICSMNTFMAKGVISDKSERHLHTIGIREADHALIAMKEADLVIAIGYDLVEY
                     SPKHWNGDLDKKIIHIDFTPAESDTYYPPTIEIAADIEYTMGAVLEEIERITKQEEKS
                     RRIITHLEPPELFKTIKNEIIGRLEKYKNDLSYPIKPEKLILDVRNALDETDMVISDV
                     GAHKLWIAKIYNTYNPNTCIIPNGFCSMGFALPAAITAQLVNPNQKIVAMCGDGGFLM
                     NIQELETAVRLCLPLIVIIWCDYDYGMISFKQIHEFGRSAFTKFNNPNFAKLAESFGA
                     IGYNIKSTKEFSLVLKEAVKSKSIPVIISVDVDYSRNRVLLDDNFVM"
BASE COUNT          566 a          427 c          334 g          718 t
ORIGIN      
        1 acaactcaaa gtggaactgc atgttgaata gaaaataaaa ctatgcaaaa cagagttaac
       61 aaaaatttct cctgctctga attgtggatc tttttcgagc ttccatttag cgcgaaagct
      121 tctctaggac gacgctatcc caagcaattc ttgtcaacct ttgatttttg aaaaacactc
      181 aattctgaat tagatttgaa aaaagtagct acatacttag atatgctaca ttacaaagtt
      241 gtcatcaagt aacacacgat ttctagagta gtctacgtca acagatatta tgactgggat
      301 cgattttgac ttgactgctt cttttagtac caaagagaat tctttagttg atttaatatt
      361 gtatcctatt gctccaaaac tctctgcaag tttagcaaaa ttgggattat taaatttggt
      421 aaaggcactt ctgccaaatt catgtatctg tttgaaagat atcatcccgt aatcataatc
      481 gcaccagata attactatta gtggtaaaca taatcttact gcagtttcaa gttcttgaat
      541 attcattaaa aatccaccgt caccgcacat tgcgacaatt ttttgatttg gatttacaag
      601 ttgtgctgtt atagctgctg gcagggcaaa tcccattgaa caaaagccat tgggaattat
      661 acacgtattt ggattgtagg tgttgtatat ttttgcaatc caaagtttat gcgctccaac
      721 atcagatatg accatatcag tttcgtcaag ggcgtttctt acgtcaagta ttaatttttc
      781 aggttttatc ggatacgaca agtcattttt gtacttttcc aatctcccaa ttatttcgtt
      841 tttgattgtt ttaaatagct ctggtggttc tagatgtgta attatccgtc tgcttttttc
      901 ttcttgtttt gtaattcttt ctatttcttc caagacggca cccatagtat attcaatatc
      961 tgcagcgatc tctatggttg gaggatagta agtatcagat tcagccggtg taaaatcgat
     1021 gtgaattatc tttttatcta aatctccgtt ccaatgttta ggactatatt caacaagatc
     1081 gtaccctatt gcgattacca aatcagcttc tttcatagca attaaagcat gatctgcttc
     1141 tcttattcca atagtatgaa gatggcgttc agacttgtct gagatgactc ctttagccat
     1201 gaatgtattc attgagcata ttcctgtttt ctctacaaat tttcttacag acaaacttgc
     1261 tctacctctt atacatccat ttccaaccaa gagtatgggc gtttttgacg caagcagtag
     1321 ttccgctgct tcttctatca ggtctttatt tggtctcgat cttagcactt gctgagcctt
     1381 gataggtttt atttcagatt ccatttttgc tatgtcttgt ggcagttcaa tatgcactgc
     1441 gccagctttc tcttccaacg ctattttaaa tccccttcta acaatttctg gaatgctatc
     1501 tgcattccgt actgaccatc tccactttgt tatgggtttg aacatagtta cggcatccat
     1561 gttttgatgc gcctctttat gcaaaaaatc ggtgtcagtt tgacccgtta ttgctaatat
     1621 aggagacctg tccatatttg cattagctac tccggtagta agatttgttg cacccggtcc
     1681 tagtgtagaa agacatacac ccactttttg tgtcaacctg ccgtacatat cggccataaa
     1741 agcagcccct tgttcatgcc ttactaatat gaatttgatt cttgaatcca acaaagacat
     1801 catcaaatca ctagtttctt ccccaggtat gccaaaaatg taatcgactc cttcggcctc
     1861 caaacatctt ataaacaagt ctgatgcctt catcacagtt tattgactac aataattatc
     1921 ccccacgttc tattatatgt accccgtgcc tttgtccttt cacagtgatc ccccaagaaa
     1981 gaactagtgt ggaatattct gactcatatg agtttcatcc agattacatg tgaatatact
     2041 ttcac
//
LOCUS       DASSIK010000296         5206 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1359521, whole genome shotgun sequence.
ACCESSION   DASSIK010000296 DASSIK010000000
VERSION     DASSIK010000296.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5206)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5206)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5206
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1359521"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            166..657
                     /locus_tag="VFI64_05535"
     CDS             166..657
                     /locus_tag="VFI64_05535"
                     /inference="COORDINATES: protein motif:HMM:NF016124.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242786.1"
                     /translation="MKEFNNAVADVVGELCKILLPIKDEYYVGAGKEIAICTLSSLDL
                     LTQISEDQYLMEKIAMVGRLLSENKGIDAIIKYSARNHYLKHIVVCGVDTRGHLAGHA
                     LLSLYRNGIDFQGRILNSKSPRPQITISRTEVENFRKRVHIYDLFGVTDLDTIKEHVD
                     KIQ"
     gene            complement(651..980)
                     /locus_tag="VFI64_05540"
     CDS             complement(651..980)
                     /locus_tag="VFI64_05540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTPase"
                     /protein_id="HET7242787.1"
                     /translation="MDKLDTLLEMQRELSLELMTDRYPSMVQERIELLSTAIIHEAIE
                     LQRLTNWKWWKKPVGFDTENAKEELIDIWHFVLQASVELGMTSDDILSYYSRKNIVNK
                     ERKKNNY"
     gene            complement(1439..2167)
                     /locus_tag="VFI64_05545"
     CDS             complement(1439..2167)
                     /locus_tag="VFI64_05545"
                     /inference="COORDINATES: protein motif:HMM:NF020014.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242788.1"
                     /translation="MVIISTGSKSIDNLIGGGVKTGLITDIFGDSKYARNAIAFSTSI
                     NFARLSNDSLVVFIDSQGSFRPEIVMNQLLSARDSVEILKRIMNLRIFSTRFLRSAIK
                     NSMLLRPRLIVIDNFVSLFSSEHSPIAKHVSLMYHLRELARIAINTDVAILITNPSVS
                     RKAKNYHTDDQNPEIVALQSRYLSHEDEVFGRSLSIYTDIVVKLDRVNTDNSTFCAQL
                     IKPANDALSYLRITQDFLFDSEQK"
     gene            2273..2527
                     /locus_tag="VFI64_05550"
     CDS             2273..2527
                     /locus_tag="VFI64_05550"
                     /inference="COORDINATES: protein motif:HMM:NF013582.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0000398 - mRNA splicing, via spliceosome
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="U6 snRNA-associated Sm-like protein LSm6"
                     /protein_id="HET7242789.1"
                     /translation="MSSSSTSQQSKRPLTTLQRSLNRKVAVRLKNEIEYRGKMNNVDS
                     YMNLILLDAEEFNGADAVANYGKVVIRGNNVLFIRLEKEL"
     gene            2573..3727
                     /gene="metK"
                     /locus_tag="VFI64_05555"
     CDS             2573..3727
                     /gene="metK"
                     /locus_tag="VFI64_05555"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HET7242790.1"
                     /translation="MVRRHLFTSESVTEGHPDKICDQISDSILDELLCQDQNSRVAVE
                     AMITTGLVFVAGEVTSNARIDIQQIVRDTLIGIGYNGPKYGFDGASCAVLTSVHEQSP
                     DISRGVDGGQDKEQGAGDQGLMFGYATNETAELMPLPITMAHKLSSRLAKVRKEKELD
                     WIGPDGKSQVSVIYEDSKPKKLDTVLVSTQHTSDISIDEVKEEVISKVIKPICEDWID
                     HSTKFLVNPTGRFVIGGPVGDTGLTGRKIIADTYGGMGRHGGGAFSGKDPSKVDRSAC
                     YMARYIAKNIVSAGLADKCEVQLAYAIGVAEPVSIMVDTFGTGVLEEKIEQQIRQIFD
                     AKPSGIIRTLDLKRPIYKSTAAYGHFGRTESSFTWERTDEADTFRRLCKN"
     gene            4211..4957
                     /locus_tag="VFI64_05560"
     CDS             4211..4957
                     /locus_tag="VFI64_05560"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HET7242791.1"
                     /translation="MEKVTVITGATHGLGLAMAREFSQSGSTVVITSRKKRLAQKTCM
                     LLSDKCQGLELDITDQSSVRKFLQSIRKTYGRVDVLINNAGFPFRRKIWFKKLHEVSD
                     KELINIIQVDLVGSFRLSKEIIPLMLRHRSGGVIINIASTPSISGHIYGAPYSLAKAG
                     IICLTKHIALEYASQKIRAYSLVLGNIATEATYDSLSGKERVKATEENAMKRWGKPEE
                     VAKIAACVASDSFSYATGNNIVIDGGTILN"
     gene            4969..>5206
                     /locus_tag="VFI64_05565"
     CDS             4969..>5206
                     /locus_tag="VFI64_05565"
                     /EC_number="2.1.1.195"
                     /inference="COORDINATES: protein motif:HMM:NF014004.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt-precorrin-5B (C(1))-methyltransferase"
                     /protein_id="HET7242792.1"
                     /translation="MSSDLKDVIVPRPYKKGLRTGYTTGTCAAAATKAAMCTLIKREK
                     LASIKVTLPKGGSALIRIACINDNDENAITAAVIK"
BASE COUNT         1720 a          887 c         1069 g         1530 t
ORIGIN      
        1 aaaacgttgt aagaataatt ataagtgtaa acgataccaa atgcaaggag atatttgtcg
       61 ggagatgttg agcaccacga cttactgtag aggtactttt attcattgta atactaaatc
      121 tgtgttcaca tctgaaactg aaattgaagg gttggtagta cagacatgaa agagtttaac
      181 aatgcagtgg cagacgtggt tggcgaacta tgtaagattc tcttaccaat aaaagatgaa
      241 tattatgttg gagccggaaa agaaatagcc atatgcactc tgtcaagcct tgaccttctt
      301 acacaaatat ccgaggatca atacttgatg gaaaagatcg cgatggttgg acgattactc
      361 tctgaaaaca aaggaattga tgcgattata aagtattcag ctcgcaacca ttacctaaag
      421 catatagtag tttgcggagt agacacaaga ggtcatttag caggacatgc tctattgtca
      481 ttatatcgaa acgggataga ctttcaaggc agaattctga attcaaagag tcctagacct
      541 cagatcacaa tttcccgcac agaggtcgaa aattttcgaa aaagagtaca tatctatgac
      601 ctcttcgggg ttactgattt agacacgata aaagagcatg ttgacaaaat tcaataatta
      661 ttcttttttc gctccttgtt aacaatgttt ttacgtgaat agtaacttaa aatatcgtca
      721 gatgtcatac caagttcgac ggatgcctgt aacacaaaat gccatatgtc aattaattct
      781 tctttagcat tctctgtatc gaatccaact ggttttttcc accatttcca atttgttaat
      841 ctttgaagtt caatagcttc atgaatgatg gctgtagaaa gtaactcaat cctctcttga
      901 accattgaag ggtatcgatc agtcatcaat tctagtgaca attctctttg catttcgaga
      961 agtgtatcca gcttatccat ctttacacaa aaaagaaaga aactattaca ctttgcggca
     1021 aattgccatc aaaaaaaaaa caaagtagag atagagtcat ccccctatcg ctacagtcca
     1081 gctaaattcg acgtttgata tggagggtct ctatcagttt aacggatatt tgctggttat
     1141 ctatattatt caatattatg ttaataaact tttccattgg tataaagatt ttattattat
     1201 tacaagagac tgcaatattt gaacaaatat gtgctcaaaa atataatctt tataattggc
     1261 ttatactcta ctggaacacc cgttcaacaa ctagattcca tttcagtaag ggaaacgttc
     1321 tcgtcattga agcggagaat gtaatgatcc attcctaatt tcagaatcat gatttttcag
     1381 tcaagatatt gtttcctaag tcgtgtactt tggtaacgca ctttaaccta aggacaggtt
     1441 atttttgttc agaatcaaac agaaagtctt gcgtaatcct gaggtaagat aatgcatcgt
     1501 tagctggttt tatcaattga gcacagaatg ttgaattgtc tgtattcact ctatctaatt
     1561 tcacaacaat atcagtatat atagaaaggc ttctaccaaa gacctcatct tcatgtgaaa
     1621 ggtatctact ctgaagagct actatctctg gattttgatc atcagtgtga taatttttag
     1681 ccttacggga aacagaaggg ttagttataa gtatagcaac atcggtatta attgcaattc
     1741 gcgcgagctc tctcaaatga tacataagtg acacatgttt tgcgatggga gaatgctcac
     1801 tcgagaatag cgatacaaaa ttgtctatta cgatcagccg aggccgaagc aacattgaat
     1861 tctttatcgc agaacgaaga aatctagttg aaaaaattct aagattcatt atccttttta
     1921 atatctctac agagtctctc gcactaagaa gttgattcat tactatttct ggtcgaaaac
     1981 taccctggct gtcaataaaa acgaccagtg aatcgttcga aagtcttgca aaatttatac
     2041 tagttgaaaa tgcaatagca tttctggcat atttggagtc gccaaatatg tctgtaataa
     2101 gtccagtctt aaccccgcct cctatcagat tatctatgga cttagaacca gtagaaatta
     2161 tgaccacgtc attgatgtac gatctttata taaaaaatag gcagccacgg caaatacaag
     2221 gtaacctttt tattgtcgta acattgtttt gattccaaag tgataaactg agatgtcatc
     2281 ttcttcaacg tcgcagcagt caaaaaggcc acttacaaca ttgcagcgtt cgttgaatcg
     2341 taaagttgct gtaagattga agaacgaaat agaatatcgt ggtaaaatga acaatgtgga
     2401 ttcatatatg aatctgatac ttttagatgc ggaagagttc aatggtgcag atgctgttgc
     2461 aaattatgga aaagtcgtga taagaggaaa taatgtcctt ttcatacgtc tggaaaaaga
     2521 actgtagaat tcatattctt tgattaccta tattaggtca gaatagcgtg aaatggtaag
     2581 aagacatcta tttacttcag aaagcgttac tgaaggacat ccagacaaga tatgcgatca
     2641 aatatcagat tctatactcg atgaattatt atgccaagat cagaattcaa gagttgctgt
     2701 agaggcgatg ataacgacag gtttagtctt tgttgctgga gaagtaactt caaacgcaag
     2761 aattgatatt cagcaaatcg tgcgagacac tctgattgga atcggatata atggtccaaa
     2821 atatggattt gatggtgcaa gttgtgctgt acttacgtcg gtacacgagc agagccctga
     2881 tatctcaagg ggggttgatg gaggtcaaga taaggaacaa ggtgctggag atcaagggct
     2941 aatgtttgga tatgccacta atgaaacggc agaacttatg cctttgccca taacaatggc
     3001 acacaaactg tcatcaagat tagcgaaagt gagaaaggaa aaagaattgg attggattgg
     3061 tccagatgga aaatcgcaag tgtcagtgat ttatgaggac tctaaaccga agaaacttga
     3121 cacagtactg gtttctactc agcatacatc agatatatct atagatgaag tcaaggagga
     3181 agtaatatca aaggttataa aaccaatctg cgaggattgg atagaccatt caactaagtt
     3241 tttggtcaat cccactggaa ggtttgttat aggaggacca gtcggtgata ctggcctgac
     3301 tgggaggaaa attattgcag atacttatgg tggaatggga agacatggag gtggcgcatt
     3361 ttcaggaaag gatccctcta aggtagatag atctgcatgc tatatggccc gatacattgc
     3421 aaagaatatc gtatctgcgg gattggcaga caagtgtgag gtacagttag cctatgcgat
     3481 tggtgttgcc gaaccagtgt ccatcatggt tgatacattt ggtactggag tgttagaaga
     3541 aaaaatcgaa cagcaaattc gacagatttt tgatgcaaag cccagtggaa ttattagaac
     3601 tttggacctg aaaagaccta tttataaaag caccgccgca tatggccatt tcggcagaac
     3661 tgaatcgtca ttcacttggg agcgtacaga tgaggcagat acgtttagaa gattgtgcaa
     3721 aaattagaat tattattata acatgcgatt tatgatacta taattcagta atttgcagat
     3781 tatgataagc agtttcgacg ttcaatattc taaatattaa cgtcatcaac aaattgctat
     3841 ggtattgaac gaagtttgat atccgataat tcgttgtacc aagatccgat tgttgatggg
     3901 atctggtaca ttatatctac tccagatatg ccgatctttt cagcacgtta aatgttattt
     3961 tccagcatta tattatgttc gagaaaattg atttgcttca tagtagcaca atactgagta
     4021 tctatttttt caatttaagg caaattttga caaatatgat gattataagt tcatgtggga
     4081 gattgacaac atttaggaga aaaagaagaa tattaatagt gactttaagt tgttctttta
     4141 gtcttgcttt ttactcgatg gatacaaatt aaaactacaa ctcaaataat tatatgatac
     4201 tttgtctcta ttggagaagg taactgttat aaccggtgct acgcatggcc taggactggc
     4261 aatggcccga gaattttccc aaagtggatc aacagtagta attacctcta ggaagaaaag
     4321 acttgcacaa aagacgtgca tgctgctgtc agacaaatgt caaggtttag aattggacat
     4381 aactgatcaa tccagtgtga gaaagttctt acaaagtatt cgtaagactt atggaagggt
     4441 tgatgtgctc ataaataacg ccggattccc ttttcgaaga aagatatggt tcaagaagct
     4501 gcatgaagtt tcagacaaag aattaatcaa cattatccag gttgatttgg ttggctcatt
     4561 tcgtctgtct aaagaaataa ttccattgat gttgagacat agatcaggag gcgttatcat
     4621 taacatagct tctacgcctt caatatccgg tcacatctac ggagctccgt actctttggc
     4681 aaaggctggc atcatttgtt tgacaaagca tattgcatta gaatatgctt cacaaaaaat
     4741 tagagcatat tcacttgtat tgggtaacat tgctacagag gcgacatacg actctctttc
     4801 aggaaaggaa agagtaaagg caacagaaga aaatgcaatg aagcgatggg gtaaaccaga
     4861 agaagttgca aaaatagcgg cttgcgttgc gagtgactcc ttttcatatg ctactggaaa
     4921 caacatcgtt attgacgggg gtacgatatt aaattaggag attgacgatt gtctagcgat
     4981 ctgaaagatg ttattgtccc aagaccctac aaaaaggggt tacggacagg ctacactacc
     5041 ggaacatgtg ccgctgcggc tacaaaggct gcaatgtgta cactcataaa aagggaaaaa
     5101 ctagcgagca ttaaggtcac cttgccaaaa ggaggatcag cactcatcag gatcgcctgt
     5161 attaacgata atgatgaaaa tgcaattaca gcagctgtga ttaagg
//
LOCUS       DASSIK010000297         2614 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1359809, whole genome shotgun sequence.
ACCESSION   DASSIK010000297 DASSIK010000000
VERSION     DASSIK010000297.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2614)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2614)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2614
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1359809"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(241..1179)
                     /locus_tag="VFI64_05570"
     CDS             complement(241..1179)
                     /locus_tag="VFI64_05570"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HET7242793.1"
                     /translation="MKKVNSLFAVFLIVNFAIYFQIEAAFATSSVSPSIQSEQKTGFN
                     FAAVGDMGCSPLTEKIINDINNKSPEVILALGDLSYQRDNADCWLNIVAPVEPKLKIV
                     LGDHDYDSDSVLKQYKDHFNMSQEYYSFNYENVHFIALATEIPFDINSSQYNFVKNDL
                     EAASKNPDIIWTIVYSYRPQYSSPSEHPGNNFLRDLYHPLFQKYNVDIILQAHNHNYQ
                     RSYPINYNNESSSSPLVTDNDIESYKDPAGQVYVTVGTGGSVLHELSGKARYMAVQYL
                     AFGFLDISITSNGRNLTGTFYDSSDGTIKDHFTLIK"
     gene            complement(1325..2296)
                     /locus_tag="VFI64_05575"
     CDS             complement(1325..2296)
                     /locus_tag="VFI64_05575"
                     /inference="COORDINATES: protein motif:HMM:NF028479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-bladed beta-propeller"
                     /protein_id="HET7242794.1"
                     /translation="MIGLLIATVTLLVLTVVISSAVSAFDPNATKYVFVKKWGSRGTG
                     DGQFMRIHDIDFNPSETRLYAVDRDGNRIQVFDKNGTFLFKWGSKGTGDGQFTVPYSV
                     DVVANGNVWVADRGNHRIQEFDKDGKFLFKFGSFGAKPGQFNNPRQVAVDKDMKYLYV
                     VDSKNNRIQKFFTNGTFVKSWGTLGTGDGQFSLPVTIIMDSKGNLIENERGNSRVQKF
                     DSNGTFLLKFGSAGKGDGQFSEIEHMATDSFDNIYVNDPQSGPDGSGMARVQKFDTNG
                     HFITKFGSAGLGDGQFTDPEHLAVDSDGNVYVTDRRHNNIQVFKPVN"
     gene            complement(2358..>2614)
                     /locus_tag="VFI64_05580"
     CDS             complement(2358..>2614)
                     /locus_tag="VFI64_05580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242795.1"
                     /translation="SPDGTNGTSDTVGFFMVPAKDLDKHVSEITKKGIDVLDKYTFKD
                     LRGGQKGTGPEQTLLLIGSKDGPSQLISTLQSIAPTLPYS"
BASE COUNT          779 a          531 c          462 g          842 t
ORIGIN      
        1 agttccgaag gatagataaa agccaatcac aagggaaaca gacatcatca gttttatttt
       61 catagttagg ctcacctaac atcaaagaac tgtgatgtat ttaaacaatc tggaaaaaat
      121 taagctcgac cttaatttag actagtatct ttatggaccg ccgaagtttg aagggtttgc
      181 cgttttaaga catttatagg attacaatag tcgagttttc cacagaatat taaccttttt
      241 ctatttaatc aatgtaaagt gatctttgat cgtgccatca gaactgtcat aaaatgtgcc
      301 agttaggttt ctaccgttac tagttattga tatgtctaga aatccaaatg ccagatactg
      361 cacagccata tatcgtgcct tcccgctcaa ctcgtgtaat actgatcctc ccgttcctac
      421 ggtaacatac acctgaccag ctggatcttt ataggattca atgtcattgt ctgttactaa
      481 tggacttgaa gatgactcat tattataatt aattggataa gatctttgat aattgtggtt
      541 atgagcttgc aatataatgt ctacgttgta tttttgaaat agaggatgat acagatctct
      601 caaaaagtta tttcctggat gttcagaagg agagctatat tgtggtctat aagaatacac
      661 tatggtccag ataatatctg gattttttga agctgcttca agatcgttct ttacaaaatt
      721 atactgcgat gagttgatat caaaaggtat ttctgtggct aaggcaatga aatgaacatt
      781 ttcataattg aacgaataat attcttgact catgttaaaa tgatccttgt actgctttaa
      841 aacagagtcc gagtcataat cgtgatcgcc taacacgatt ttcaactttg gttcaacagg
      901 agcgacaata ttaagccagc aatcagcgtt atctctttga tacgatagat ctcctaaagc
      961 aagtatcacc tccggagatt tgttatttat gtcgttgatg attttctctg tcaaaggact
     1021 acaacccata tctccgacag cggcaaaatt aaatcctgtc ttctgttccg attgaattga
     1081 aggtgataca gaggaagttg caaacgcagc ctctatctga aaatatatgg cgaagttaac
     1141 tatcaaaaat acagcaaaga gtgagttcac tttcttcata ggattatata atttctgttt
     1201 tgaagaaatc ttccgtgaac ttaccgaaga aagttttcca cctgcaattg agtttccctt
     1261 taatatctac ataggtacta tgagagtata tgatttgttc tagtagtgtc aactaccgca
     1321 tttcctagtt tacgggtttg aatacttgga tattgttatg tctcctatcg gtaacgtaaa
     1381 catttccgtc tgaatctacg gcaagatgtt ctggatctgt aaactgaccg tcacctaggc
     1441 cggctgaccc gaattttgta ataaagtgac cattcgtatc gaatttttgg acacgcgcca
     1501 ttccgctgcc atcagggcct gattgcggat cattcacgta tatattatca aaactgtccg
     1561 ttgccatatg ctctatttct gaaaactgtc catcaccctt gcctgccgat ccaaacttta
     1621 ggaggaacgt accattactg tcaaattttt gcactcgact gtttcctcgc tcattctcaa
     1681 tcaagttccc tttggagtcc ataatgatag taacaggcaa actgaattga ccatcacctg
     1741 tacctagtgt tccccaactt ttgacaaaag ttccattggt gaaaaatttt tgaatacgat
     1801 tgttttttga atctacaacg taaagatatt tcatatcctt atcaacagca acttgcctgg
     1861 gattgttaaa ttgtcctggt tttgcaccaa aagatccgaa tttgaaaaga aactttccat
     1921 ccttgtcaaa ttcttgaata cgatgattgc ctctgtcagc aacccaaaca ttaccattag
     1981 cgacaacatc tacactgtat ggtactgtga attgaccatc accagttccc tttgatcccc
     2041 atttgaaaag aaaggttcca ttcttgtcaa atacctgtat acgattacca tctctatcta
     2101 ccgcatagag acgagtttct gagggattga agtcaatgtc atgtattcgc ataaattgtc
     2161 catcacctgt acctctagaa ccccatttct tgacaaaaac atattttgta gcgtttggat
     2221 caaatgcact cacagcagaa gaaataacta ctgtcaaaac tagcaaagtc actgttgcta
     2281 ttagcaatcc aatcatggga taggaaaatt gattggacgt taatatatta gtatctgatt
     2341 tcattttcaa gttcatttca actgtatggc aacgtaggag caatactttg gagagtcgaa
     2401 atcaactgac tcggaccatc tttgctccct attaatagca acgtttgttc aggaccagtc
     2461 cctttctgtc ccccacgtag atctttgaaa gtgtacttgt caagcacgtc aatacccttc
     2521 tttgttatct ctgaaacgtg tttatccaag tcttttgccg gtaccataaa aaatcccacc
     2581 gtatctgaag taccattggt accgtcgggg gatg
//
LOCUS       DASSIK010000298         4074 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_553549, whole genome shotgun sequence.
ACCESSION   DASSIK010000298 DASSIK010000000
VERSION     DASSIK010000298.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4074)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4074)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4074
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_553549"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..588)
                     /locus_tag="VFI64_05585"
     CDS             complement(<1..588)
                     /locus_tag="VFI64_05585"
                     /inference="COORDINATES: protein motif:HMM:NF024810.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kelch repeat-containing protein"
                     /protein_id="HET7242796.1"
                     /translation="MNVNIAYSTPESSKISHLNESYWTIGKNMSTARNELSAVVLNDK
                     IYAIGGEDFPVGGGQKDTIEVYDIAKDNWVEDNVAPMPLPLDHSASAVYDGKIYVVGG
                     FLKRKIPTDKLFIYDPRKNEWQEGRSLPSAVGGAKNAEFINGILYVVGGLNSSHIPLN
                     TNYAYDPKFNNWTAKSPMPTARHHLQTAVFEGKLFS"
     gene            800..2101
                     /locus_tag="VFI64_05590"
     CDS             800..2101
                     /locus_tag="VFI64_05590"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HET7242797.1"
                     /translation="MITLALLYTTFFQPTNFAKGDIYEPLEPTEGLPIVNDPNLKVEV
                     VFEGLHFPTSMAFLGPADILITEKNDGTVQRLKSWKMQHNPILDVDVATRHSRGILGI
                     SVAKNNETKISNGHDHRYVFVYFTRSSEPKDTNGARAEKSGGNVLYRYDLNGSRLLDP
                     LLLLELAPKKNPDHNGGAIMIGPDTNIYIPVGDGGNDTTETQNVNDGGPPNGSGGILK
                     ISQQGPLVQNKSDNVPIISKYYYASGIRNSFGLAFDPVSGKLWDTENGPTFGDEINLV
                     EPGFNSGWLKIQGIWKTDFEPREGPEKGRIATEEIGSLVDFGGHGKYSAPEITWSNTV
                     APTALVFLTTDKIGQEYENDMFVSDIKYGNIYHFKLNIERTGFILNGSIADKVIDSDQ
                     EMNRLIFGTGFGGITDMEVGPDGYLYVLSFGKGMLYRISPK"
     gene            2378..2833
                     /locus_tag="VFI64_05595"
     CDS             2378..2833
                     /locus_tag="VFI64_05595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242798.1"
                     /translation="MDNILFDISKLGKSLHFLARRLSHFTYTIKHYRQIMDTKKIGIF
                     AILSLSIVAVLTGTTGMSLLSPVFAGGDHHDHDGKKCKKNEDNNCNDTENNQKLTPKE
                     DCDNETTIKDHSKKKDNGNVLVCSTDAVNLKDSVLLNSTIFGDTIEPIF"
     gene            3529..3951
                     /locus_tag="VFI64_05600"
     CDS             3529..3951
                     /locus_tag="VFI64_05600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242799.1"
                     /translation="MFSKTSLLGFAIFFIVALVFASFLSTNAQNTQQATAKSPSMKSL
                     MSGNNSIMKLGVISMPIVCTTLNDVLNATLSGVLGGDLMSMAGGNNETNSTHGMMMDL
                     MKQGMENMSQGDAKQMQVLKDMVFCSPATEKMVKNMMK"
BASE COUNT         1372 a          696 c          799 g         1207 t
ORIGIN      
        1 agaaaatagt ttaccttcga atacagcagt ctgaaggtga tgtcttgcag taggcattgg
       61 tgactttgca gtccaattgt taaatttagg gtcataggcg taattcgtat tcaatggtat
      121 gtgagaggag tttagacctc cgactacgta caagatgcca ttaatgaatt cggcattttt
      181 tgcaccgcct actgctgatg gtaacgatct accttcttgc cattcatttt ttcgtgggtc
      241 ataaatgaac agtttgtcgg taggaatttt tctcttaaga aatccaccga ctacgtatat
      301 cttgccatca tagacagcag atgccgaatg atccaaaggc agtggcattg gtgccacatt
      361 gtcttcaacc cagttatcct tggcaatatc gtatacttct atggtatctt tttgacctcc
      421 tcccactgga aaatcttcac ctccaatagc atagatcttg tcatttaata caacggccga
      481 aagttcattc ctagctgttg acatattttt gccaatggtc caatacgatt cgttaagatg
      541 agagattttc gaagactctg gagtagagta agcaatatta acattcaaca gaataaaaaa
      601 caaaaatcca aaagaaatag tagtaatagt tagccacaga aatgaattga aaagtaatat
      661 gcttcgcata ataactcatg agttgctacg tataataaca ttcccaagca acagagtatc
      721 acaagattaa ataagacctg gaattatgca tccctattaa agaaggttga aaccaagttt
      781 tcctgtagga ctgcctgtat tgataacttt agcattactt tatacgactt tctttcaacc
      841 aacaaacttt gccaaaggag atatttacga accgctcgaa ccaaccgaag gtttgccaat
      901 tgtcaatgat cctaatctga aagtggaggt ggtgttcgaa ggacttcatt ttccaactag
      961 catggctttt ctaggacccg cagatatttt aattacagaa aaaaatgacg gtacagtcca
     1021 gagattaaag agctggaaaa tgcaacataa tccaattctg gacgttgacg tcgccacccg
     1081 acattcccgt ggaatactgg gaatttccgt tgcaaaaaat aatgaaacaa aaatctctaa
     1141 tgggcatgat cataggtatg ttttcgttta cttcactaga tcgagcgaac caaaagatac
     1201 taatggtgcg agagctgaga aatcaggtgg aaatgtcctt tatcggtacg acttaaatgg
     1261 ctctagatta ttagatcctc tcctacttct tgaattagct cccaaaaaaa accctgatca
     1321 taatggaggc gctattatga taggtccgga tacgaatatt tacataccgg tgggagatgg
     1381 tggtaatgat actactgaga ctcaaaatgt aaatgatgga ggtccaccaa atggaagtgg
     1441 tggaatactt aaaatttctc aacaaggacc cttagtacaa aataaaagtg acaatgtccc
     1501 aataattagc aaatactatt atgcaagtgg gatacgaaat agcttcggtt tagctttcga
     1561 tcccgtaagt ggtaaattat gggacactga aaacggacct acatttggtg acgagataaa
     1621 cctagtagag ccaggattca atagtggatg gctgaagatt caaggaatat ggaagacaga
     1681 ttttgaacct agagaagggc ccgaaaaagg aagaatcgct accgaagaaa ttggaagcct
     1741 tgttgatttt ggaggacatg gaaagtatag tgcgccggaa attacttgga gtaatactgt
     1801 agcaccaaca gcacttgtgt ttctcactac agacaaaata ggacaggaat atgaaaatga
     1861 catgtttgta tcagatataa aatacggaaa tatttatcat tttaaactaa atatcgagcg
     1921 aacgggtttt atcttgaacg gatccattgc agacaaggtt atagactctg atcaagagat
     1981 gaatcggttg atatttggaa caggttttgg aggaataact gatatggaag ttggacctga
     2041 tggatattta tatgttctct catttgggaa aggtatgtta tatagaatat ctccaaaata
     2101 gccattttaa tcattcgagt tgaaagcaac agaaaaattt gaatagttat tattattgtc
     2161 gtggtaaaat tagtccagtt cagtaagtcc gacctggcta ctaacctaaa aagttctttg
     2221 taggcggcta taaatcttaa atacaatgat ccttgtatcg cgactagaac tcattactgg
     2281 gaaagagata aaaaatttgc gtcatagtta gaaaacagct gacacttttt attaacagtt
     2341 acatattatt taacacacta aatcagatat gataagtttg gataatattc tatttgatat
     2401 ttcaaagcta ggaaagtcac ttcatttctt agcaaggcgt ctttcacatt ttacttatac
     2461 tatcaaacat tatagacaga ttatggatac gaagaaaatt ggaatattcg caatcctgtc
     2521 actttcaatt gtggcagtat taacgggaac aacgggtatg agtcttttat cacctgtgtt
     2581 tgctggaggc gatcatcacg accacgatgg taaaaaatgt aagaaaaatg aagacaataa
     2641 ctgcaacgat acagaaaata atcaaaaact aacgccgaag gaagactgtg ataacgaaac
     2701 tacaatcaaa gatcacagta agaagaagga caatggcaat gttttggtat gcagtactga
     2761 tgcagtcaac ctcaaagatt cagtgctact caattctact atatttgggg acacaatcga
     2821 accaattttt taatagggta aatcccaaat aaggaagccc attattttta tttttttaat
     2881 ttagcaacta tggcttccag aaataatcat cttcttttgt ctcttcctta gtatctgtcg
     2941 atatgttaga agtaatctcg tctgtttttg caggctttat aacttggtct tatatcaaac
     3001 ctttatctcg atgtttgaag actcgaaaat atgaatgttg aagaattcta aaagagagca
     3061 ggtctattta ggcagttgaa taattattca ttaattcttc attattttag gctaccattt
     3121 ttacttttcc agcaacacag agaaattata ggcatcacta catcttatac atcttactag
     3181 ccagacggag agcttctagt ctacccaacg caatttatgt tgtagatttt tactacaaca
     3241 tagaaacgac ataaaactac agataaatca cccacaatta tgatattagt acaagaaaca
     3301 gcaaacctga tatatagaat atgagaatat aaacatctta aatatgtgaa cgctgctatg
     3361 gtggcgatcg gcgaggctaa ccggatagca tacatagcag cttgattaaa ttttttgatt
     3421 caaatacgta attgagggca ctgcaactat tcaacagatc gattttgaat aatatgacac
     3481 atcatttttc cgagatgttt attagaagga cggtattcct gtcgaacaat gtttagtaag
     3541 acttctttat tgggattcgc gatattcttt atcgtagcgt tagtattcgc tagctttttg
     3601 tcgacaaacg cacagaatac acaacaggcg acagcaaaat cgccgagtat gaaatcatta
     3661 atgagtggta ataattcgat aatgaaattg ggcgttattt caatgccaat tgtgtgtact
     3721 acccttaacg atgtattgaa tgctacacta tccggtgtgt taggtggtga tctgatgagt
     3781 atggctggag gtaacaatga aactaattca acacatggaa tgatgatgga tttgatgaaa
     3841 cagggaatgg agaatatgag tcagggtgac gcgaaacaaa tgcaagtatt gaaggatatg
     3901 gtattctgta gtccagcaac tgaaaaaatg gtaaagaata tgatgaaata gcgtctcgta
     3961 aagactcttt atttttcgtt atttcatttt atacatgtac aagcaagatt gagagcgtcc
     4021 aaactttctg aaatggagtg taataggtct tattcaacga ccccgaacct ggat
//
LOCUS       DASSIK010000299         4058 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1064462, whole genome shotgun sequence.
ACCESSION   DASSIK010000299 DASSIK010000000
VERSION     DASSIK010000299.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4058)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4058)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4058
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1064462"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(272..562)
                     /locus_tag="VFI64_05605"
     CDS             complement(272..562)
                     /locus_tag="VFI64_05605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242800.1"
                     /translation="MSTIDLNTSMNDEGVKNNNSMILLVQKESPLGYESVCLICFKFL
                     ATIYDEKKMKSVHVMSEEEMKIATCKSIYHKKLTDGTKSTNQGRSAWITWCV"
     gene            568..807
                     /locus_tag="VFI64_05610"
     CDS             568..807
                     /locus_tag="VFI64_05610"
                     /inference="COORDINATES: protein motif:HMM:NF002316.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L39e"
                     /protein_id="HET7242801.1"
                     /translation="MLTLTIRLEGDFHSDQHLKGGILKMIKMAARKNTSRKKRLIKRI
                     KQNRPVPAWVIIRTHRHVRTNPKRRAWRKSDVGVG"
     gene            825..1154
                     /locus_tag="VFI64_05615"
     CDS             825..1154
                     /locus_tag="VFI64_05615"
                     /inference="COORDINATES: protein motif:HMM:NF002258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31e"
                     /protein_id="HET7242802.1"
                     /translation="MAENEESLTRVYTIRLGKAWGTPQYRRTDRVLNMIKEFAKKHMK
                     TDKIKIEQDLNRYIWRKGKTNPPRTVRVRMIREDDVVIVSSFTEPRIAEETKDQGSEI
                     SKGKDPE"
     gene            complement(1269..2231)
                     /locus_tag="VFI64_05620"
     CDS             complement(1269..2231)
                     /locus_tag="VFI64_05620"
                     /inference="COORDINATES: protein motif:HMM:NF012320.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242803.1"
                     /translation="MDNFELKGPVLLVGIGGLGRKIALEAKRCTDFDCMVISNDKRDV
                     EDENSLYVDCRPWINPGIFRIRSSLQNYESEIMKIFSRYGTVLLISNLGGNSGTAISP
                     LLSNIAKFSLNLKVINFVVMPFRYEKERLFNSAVSLKRLNSASDAVFVIDNDAFLEIN
                     PDLSLEECFTITNKTLVHIIKLMPSINLPPGKRIISTSSSEELGVENALRDSLAMLYS
                     SSDPDSLGKSFLYINNGIAGSIGNLNSIVDKLRKIQNIDRNAEIDLSPSRTFDRPVNL
                     VTLVEGHSKFDSYDPLAIIPGDSCLDWEIPESHPDIVLPLSNIE"
     gene            complement(2338..3705)
                     /locus_tag="VFI64_05625"
     CDS             complement(2338..3705)
                     /locus_tag="VFI64_05625"
                     /EC_number="2.8.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase"
                     /protein_id="HET7242804.1"
                     /translation="MHPLALSEEQVGLYQSETVRNKKRVWVEAYGCSASMADSEMIKG
                     ILIRGGYDLSPEPGMSDLNLIVTCGVKESTEHRMLARITALAKLEKPLVVAGCLPKSD
                     RALLERYCPEACLLGPHALDKTLDVVNNSIKNKRMVALNDSVTDKVNLPRIRFNDAVS
                     IIQISSGCLSDCSFCQTKLAKGHLRSYRLGDILRQMEYDVADGCKEIWLTSTDNGCYG
                     LDINTNLADLLDAGCKIPGEFKVRVGMMNPMYLPRFMDKLLVILSKSDKLFKFLHIPV
                     QSGSERILRKMKRGHSSDVFCQIVDVFRTAIPEITIATDLIAGFPSETDEDFQRTVDL
                     IKATKPDVINSSKFSPRPGTLASKFTRVDTSVVKARTKKLHELIRQVSYSRNMQWKGW
                     EGEILVDEVNDKFIQGRNYAYKPVVLDDVLPGIKIERNQLLGKRLTVKIKEVSNFCLK
                     GSIMT"
     gene            complement(3873..>4058)
                     /locus_tag="VFI64_05630"
     CDS             complement(3873..>4058)
                     /locus_tag="VFI64_05630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HET7242805.1"
                     /translation="DAAMTDQENLLKYHLCLLADYGIFFLPKKMGAISFVHDKEDLDL
                     LLSATNDIINRGILSKV"
BASE COUNT         1265 a          822 c          738 g         1233 t
ORIGIN      
        1 attaatagct taaagtgatg gtagcattta tcatcataag gcaagagaat ggatctccga
       61 aatactggct tcgttctgct gtttgctgta ataaggatta tactttcacc aaacttggag
      121 ctggatcatg aattagatta aaattaactt gatttagttt tgtaaattgc aagggtacgc
      181 tcactatcta atcgtttcta tccgttgaaa taatcaagga actcccacgt ttacgaaatt
      241 agagttgcac ctcaatcaac tatatggaaa ttcacacaca ccatgtgatc cacgcagacc
      301 taccttgatt tgttgacttc gtaccatcag tgagtttttt gtggtaaatg ctcttgcatg
      361 tcgctatctt catttcttcc tccgacataa catgaacact tttcatcttc ttctcgtcgt
      421 aaatagtagc aagaaattta aaacaaatta agcaaactga ttcataaccc aacggggatt
      481 ccttttgtac taatagtatc atagaattat tattctttac cccttcatca ttcatagacg
      541 tattcaaatc aatggtggac acccaacgtg ctaacattaa caataagatt ggagggagat
      601 tttcattcag accaacactt aaaaggagga atattaaaaa tgattaaaat ggctgcacga
      661 aagaatacat ctagaaagaa gcgattgatc aaacgcatca aacagaatag gccagtgcca
      721 gcctgggtaa ttattagaac tcatcgtcat gtcaggacta atccaaaacg cagagcgtgg
      781 agaaagtcag acgtaggtgt aggataattt cggagtgaga ttggatggcc gagaatgaag
      841 aaagtttaac gcgtgtttat acgataaggt tgggaaaggc atggggtact ccccaataca
      901 gacgaaccga cagggtcttg aatatgataa aggagtttgc aaagaaacat atgaaaacag
      961 acaaaataaa gattgaacag gacttgaaca ggtacatatg gcgaaaaggc aagactaatc
     1021 ctcctcgaac tgttcgagtt agaatgataa gagaagatga tgtggtcata gtgagttcct
     1081 tcacggaacc aagaattgct gaagaaacga aagatcaagg gtctgaaata agcaaaggca
     1141 aagatccaga atagttattt ttcatactac caattgaaat ctagactttc ttacaagaaa
     1201 atctctacaa agctaatttg gaatatcatg tatcttttat ttcatgaaga accgtagcaa
     1261 tcgattcact attcaatatt actcagtggg agaacaatat caggatgaga ctctgggatc
     1321 tcccaatcta aacagctatc tccaggaatt attgctaacg ggtcgtatga atcaaacttt
     1381 gagtgcccct ctaccaaagt tacgagatta accggacgat caaaagtacg agatggagaa
     1441 agatcgattt ccgcattcct gtcaatattt tgaatcttcc tcaacttatc tacaattgag
     1501 ttcaaatttc caatagatcc tgcaattcca ttatttatat acaagaatga ttttcctagt
     1561 gagtctgggt ctgatgacga atagagcata gcaagagaat ccctcagcgc attttccaca
     1621 ccaagttcct ctgaactgct ggtagagatt attctctttc caggtgggag atttattgaa
     1681 ggcatcagtt ttataatatg aactaaagtt ttatttgtta tagtaaaaca ttcttctagt
     1741 gacaaatcag gattaatttc caaaaatgca tcgttgtcta ttacaaatac tgcgtctgaa
     1801 gcagaattga gtctctttag agaaacagca gagttaaaca acctttcctt ttcgtaccga
     1861 aaaggcataa ctacaaaatt aataactttg agatttagag agaattttgc gatattggac
     1921 aatagtggag atatagccgt gcctgaattc ccaccaagat ttgagatgag taaaaccgtc
     1981 ccatatcttg agaagatctt catgatttct gattcataat tctgaaggga agatctaatt
     2041 ctaaagatgc caggattaat ccacggtcta cagtccacat acaatgaatt ttcatcttct
     2101 acatcgcgtt tgtcgttact gattaccata cagtcaaagt cagtgcaacg ttttgcctcg
     2161 agagctattt tccgacccag tcctccaatc ccaactaata acaccggtcc cttcaattca
     2221 aaattatcca acttagtaac cgtaccccgt tttgagcatg aaaaattaag ataaaagctt
     2281 tattgattaa ctagatgcac atatgtagtt caaaaaaatt gattttattt aaaggtctta
     2341 tgtcatgata gatcctttta ggcaaaaatt tgaaacttct ttaattttta cagttaatct
     2401 tttacctaat agttgatttc tttcaatttt tatcccggga aggacatcat ctagtacaac
     2461 aggcttatac gcataattcc tgccttggat aaatttatca tttacctcat caaccaatat
     2521 ctctccttcc catcctttcc attgcatatt cctgctataa ctgacctgcc ttatcagttc
     2581 atgaagtttc ttggttctag cctttactac tgaggtatca accctagtaa attttgaagc
     2641 cagggtccct ggacgagggc tgaattttga ggaatttata acatcaggtt tggttgcttt
     2701 tatcaagtcg acagtccttt ggaaatcctc atcggtctcc gatggaaacc cagctatcag
     2761 gtcggtagca atagtaattt cagggatagc agttctgaac acatccacta tctggcagaa
     2821 cacatctgaa ctatgtcctc tcttcatttt tcggagtatt ctctcacttc cgctttgaac
     2881 tgggatatgt aggaatttga agagtttgtc agattttgac aaaataacaa ggagtttgtc
     2941 catgaatcta ggtaagtaca ttggattcat cattcctact cttaccttaa actctccagg
     3001 gattttacaa ccggcatcta gcaaatcggc taaattggta tttatatcaa gaccgtagca
     3061 accgttatcg gtagaggtta accagatttc cttacatccg tccgctacat catactccat
     3121 ctgtcgtaat atgtctccaa gacggtaact tctaaggtgt cctttcgcta gttttgtttg
     3181 acagaacgag caatcactca aacagccgct tgaaatctgg atgatgctta ccgcatcatt
     3241 aaatctaatc ctaggaaggt taactttgtc agtaacagaa tcgtttagtg cgaccatcct
     3301 tttgttcttg attgagttat taactacatc gagtgtttta tccagcgcgt ggggacccag
     3361 caaacaagct tcaggacagt acctctccaa gagggcccga tctgatttcg gaagacagcc
     3421 cgctaccacc aggggtttct ctaattttgc aagagctgtt attcgagcca gcatcctatg
     3481 ttctgtcgat tccttcactc cacaagtaac aataagattc aggtcagaca ttcctggttc
     3541 gggggataga tcgtagcccc ctctgatgag aattcctttt atcatttctg agtccgccat
     3601 gctcgccgaa catccgtagg cctccaccca aacccttttc ttattcctaa cggtttcgct
     3661 ttgatataat cccacttgtt cttcagatag cgcaagaggg tgcacgctag attcactcgg
     3721 tcctggtaga cacagcttaa ttggaatcaa atctataaga tcaaaataaa gagtactaaa
     3781 tcaattttat tgatcaactc tttgatagct taaatgatat attcacattt cgtaccaacg
     3841 catctagtca aagagccatt attttctctt tgctatactt tgctcaaaat ccctcggtta
     3901 attatgtcat tggtggcaga aagcaaaaga tctaaatctt ctttatcatg tacgaaagaa
     3961 atagcaccca ttttttttgg tagaaagaaa attccatagt cagcaagaag acagagatga
     4021 tatttgagaa ggttctcctg gtcagtcatc gctgcatc
//
LOCUS       DASSIK010000300         4812 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1458871, whole genome shotgun sequence.
ACCESSION   DASSIK010000300 DASSIK010000000
VERSION     DASSIK010000300.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4812)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4812)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4812
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1458871"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            352..765
                     /locus_tag="VFI64_05635"
     CDS             352..765
                     /locus_tag="VFI64_05635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242806.1"
                     /translation="MGRWDDGSGQFAGGGGRTGRSGRNYARIAKFVILGGFIVVGIVV
                     LSVFVTRSGLNIEIREQNEAMGAIQTISVRISNNKFDTLNDVTVQFGDNGTIRSVGTI
                     GPFSSIMITPDPKDLHFEKVIVKGNGGKVEAVKFR"
     gene            1607..1765
                     /locus_tag="VFI64_05640"
     CDS             1607..1765
                     /locus_tag="VFI64_05640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242807.1"
                     /translation="MINFNFFKKKKQAEPTVKCEKCGATFQNEDMMYAHLKNNHPQNE
                     GTEEKKGE"
     gene            2635..3024
                     /locus_tag="VFI64_05645"
     CDS             2635..3024
                     /locus_tag="VFI64_05645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242808.1"
                     /translation="MKEIDYLNQICLDTLYSNKSVKYVGVIDNNRKLLAGKFRNELQN
                     SMIKNPPARYNNTKCCSPKFYFDILGFSNFELVLGSNVDQHISLESDTMELVVIPLTS
                     HKDKYLCIYLEPKILDQKMVAKLSNIF"
     gene            3128..3439
                     /locus_tag="VFI64_05650"
     CDS             3128..3439
                     /locus_tag="VFI64_05650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242809.1"
                     /translation="MSGFSPRNQNRESDEIRVRTKTLLDLFKKNYLASKSNDFTSDAI
                     GNMLVCLSTYEKIFEGFLLVSEKRKMPQEMTDGFVKWATDQLDELKISLNGIYEKRDM
                     R"
     gene            4041..>4812
                     /locus_tag="VFI64_05655"
     CDS             4041..>4812
                     /locus_tag="VFI64_05655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HET7242810.1"
                     /translation="MKLSQSYKIFLLLAITISAFCLLEPERGYTLSSPTENPGIESQP
                     LTSIFKSIQDSVVQITRPSPFPPAIPSNTEQNTTALGSGFIYDIEGRIITNSHVVGDS
                     KTVDVMFINGSRYFAKVIGKDVFNDIAVLEPVNFSGPFQPLRMGNSSKLEVGDQVIAI
                     GNPYGLAGSMTSGIVSQLGRLVTAQGTSFAIPDMIQIDALINPGNSGGPLIDLDSRVV
                     GMNTAGILSENGGFSGIGLAIPSNAITRIVPSIIEKGIF"
BASE COUNT         1664 a          771 c          883 g         1494 t
ORIGIN      
        1 gtaactctaa cggtgatgta atgacaccct catcaataat agctatccca tggaattgtg
       61 tgcaattcgg ggtatggttt tagaaatacg acagtctctg caggttgaaa cttgtaactg
      121 ctgttgcatt tgggttgaat atcacaattc tccgggctat ggagaacatt tagttttaat
      181 tacgcatctt ttgatttcca taaaaaccat tatgccatgt tgacatttta ttagggtcta
      241 tcaataatcc ttaatttgtt atgacgaaaa catcggttga tagatgcgag aaccgggaat
      301 tcttataagt tgttataacg tagataatag taaggacaag gttatcaatc gatgggaaga
      361 tgggatgatg gatcaggtca atttgcgggc ggaggcggtc ggactggcag aagtggaagg
      421 aattatgcta gaatcgctaa gttcgtgatt ttaggagggt ttatcgtggt tggaatagtt
      481 gtcttatccg tgtttgtaac taggtcaggt ttgaatatag aaatcagaga acagaacgaa
      541 gcaatgggtg cgattcagac aataagtgta aggatttcaa ataacaaatt tgatacacta
      601 aacgatgtaa ctgtacaatt cggtgacaac ggaacaatcc gcagcgtggg aacgattggt
      661 cccttctcgt ccataatgat tacacccgac ccaaaagatt tgcattttga aaaggttata
      721 gtaaagggaa acggtggaaa ggtagaagca gtgaagttta gatagtatga tagagtaatg
      781 atgaagaaaa tgatcaaata gtgacttacg tactcttttt aggtaatgat attattattc
      841 cctcatccgt cagatttaca tagccgatag tagactaata ttcacatccc ttttcaaaaa
      901 attgatttat caaatattcc attcaataaa tcatatctgg agttattttt tgagccaaaa
      961 tgtttcgata tctccaaaga caaaggcaaa tttgaactat agtagaattt tataaaagat
     1021 gtgataatta ggtgagatat ctcataaaac atcctttagt caactacatc aaatagaaac
     1081 cttatgcgaa aattattcat taacttcctt ccatagttac cttaattaat attctataga
     1141 ctagattaca atattgatta agattttaac ttgatagaat gattaatcac ttgattttaa
     1201 ttattcatcc aaataaatgc tattaatcga taatagaaaa tgcaattaaa actaagaata
     1261 tactcttcag aaaataatac gaaaattagg aacacaaaaa aataaccctg aagtgtcatt
     1321 actgcaattc ggaatattgg attgaaacag aacgtatgat aagttcgcaa ctttggcata
     1381 ttgacgagat aaatggtgac aagaaaaagg taccattaaa tgtaaatctg ctagattaat
     1441 agtttgattt tttccatata ctaaattgag cgatgtgaaa ataaataaga aaaagttggg
     1501 attacatcat ggcatagtaa taaattagat ttattaaagt tcaagcacca ttaattcagt
     1561 tttagataag gataagttta tactgcatcg tgttctatat aaatacgtga taaatttcaa
     1621 ttttttcaag aaaaagaagc aagcagagcc tacggttaaa tgcgaaaagt gtggtgcgac
     1681 attccaaaac gaggacatga tgtatgcgca tctcaaaaat aaccatcctc aaaatgaagg
     1741 gacagaggag aaaaaaggag aatagttaca caaagcaaat agagggaact gaagttaaca
     1801 tcgccacttt tttaaatttt ttcgaggcgt aaatgccaat gtatgttctt acttttgtag
     1861 tgggttaaac tacgaaatca actgcgtgca tgctattcaa gatggatcaa ggggacacat
     1921 ttaagagatg tcatttgaag catctaaata tcgatacttt aaagctggat ttgaaatagt
     1981 gaggaggagc atgcttgagt tattcaatca attttactag atcaagtttg cttcgagaat
     2041 ttcagaaaag acatgtagtg actcggatcc aaatagatgt cgtttttctg ctgtcatttt
     2101 aaagacttat agtaaggagg gatataatct cctctactgc acgtcacaaa atgactttat
     2161 catgattatc tatcacagga aataccatat tatatgcatg aaacaaatta cacatatagg
     2221 atgactatcc attggaattg agtgaatatt ttaattatag taacaaataa actcgtcgtg
     2281 atgattaaaa attttcttaa gtaaataatc gtattataca ttgatctttg aaatccactc
     2341 ttgacaagaa gtaattcaat agacttgctt aattattgca tctaaaacga cctgcaaaac
     2401 ctgcttatct tgcgacaata tgtcctagtt ttcgcccatt ttgattttat tgcaatgaaa
     2461 gagtaatttt aaattagaaa agttaaagaa ttttaacaaa ttattatatc attgttgtca
     2521 taatttaagt gtaattgcaa ccaaatagga tcatcttaat aactattcat ttatatatag
     2581 atctaggtat gcactttcat tcaagaatgt catttactat aattttgatt tgaaatgaaa
     2641 gaaatagact acctcaatca aatatgtctt gacacgcttt actccaacaa atccgtaaaa
     2701 tatgtgggtg taattgataa caatagaaaa ttacttgccg gtaaattcag aaatgagcta
     2761 caaaattcta tgatcaagaa tcctccagcc aggtataaca atactaaatg ctgctcacca
     2821 aaattctatt tcgatatttt aggtttctct aactttgaac tagtacttgg ttcaaatgta
     2881 gaccagcaca tatctctcga atcagatact atggagctag ttgtgattcc actgacgagt
     2941 cacaaagata aatatctgtg tatatacctt gaacccaaaa ttttagacca aaaaatggta
     3001 gctaaattat cgaatatttt ttgataacca ttgctcttaa tgtttgtacg caagctaacg
     3061 aagtggtgac attcaagtgt agatcatatt ttaagtaagg ccataaccta agatacagga
     3121 tgcaacagtg agtggtttca gccccaggaa tcaaaatcgt gaaagtgatg aaataagagt
     3181 aagaacgaaa accttattag atctatttaa aaaaaattat ttagctagta aaagtaatga
     3241 ttttacatca gacgcgattg gaaatatgct ggtatgtcta tccacttatg agaagatatt
     3301 tgagggtttc cttctagtat ctgaaaagcg aaagatgccg caagaaatga ctgacgggtt
     3361 tgtcaagtgg gccactgatc agttagacga gctaaaaata agcctaaatg gaatttatga
     3421 aaagagggat atgcggtagt cataagtaca caaattaaaa aaatgataaa attcggtctt
     3481 cagttattgt tccacccaca ccttacaatt taagtcaata acttccgata ctacattctg
     3541 ctgattttgt gccgtctgtt gccaatcacc ttcaaatagc actttgtaaa atacagcatt
     3601 ttaaacactc aggatcactc aggatacatg aatttcggtg agaattattc acgctttaaa
     3661 tgccatttaa gaagcggtca agccttctaa acctgaccag actaattagt caataacttt
     3721 tttaactcac tacggggttt ccgtctaata tgagtttcac caaagaccag aaatgcaaat
     3781 gtgggaacaa aacctttcgg gtagcaaaag atcctattgg tcaggataac ttgtccacat
     3841 ttcatattgc atgtgcacag tgcggagaac atttccacag tttcaaaatc tgatttcgta
     3901 gttaataaaa aattatacca tcatcatttc ttacccattt aatcatggat gcattttagc
     3961 agtcaaccag atttattctt caagttaagg tagaagtttt cacgaaatgt ctattagttt
     4021 gcctaacttt gataccctgt atgaaattat cccaaagtta caaaatcttc cttctcctgg
     4081 caataacaat ctctgctttc tgtctccttg aacccgaaag gggttatact ctttcatcac
     4141 caacggagaa tccaggaata gaatctcagc ctttgactag catttttaag agtattcaag
     4201 attctgtggt tcagataaca aggccttctc catttcctcc tgcaattcct agtaacacag
     4261 agcagaatac taccgcttta gggtctggtt tcatttatga tatagaaggt agaataatta
     4321 caaacagtca tgtcgttgga gattctaaaa ctgtagatgt aatgttcatt aatggaagta
     4381 ggtattttgc gaaagtaatt ggcaaagatg tattcaatga cattgctgtt ttggaacctg
     4441 taaattttag tggaccgttc caaccactac gaatgggaaa ttcttcaaaa ctggaagtag
     4501 gagatcaagt gatcgccatt ggtaacccat acggattggc tggttcaatg acatctggaa
     4561 tagtgagtca attagggaga cttgtgacag ctcagggtac ttcttttgca atcccagaca
     4621 tgatacagat agatgctttg attaatcctg gtaactccgg aggaccgtta atagatttag
     4681 attccagggt tgttggtatg aataccgcgg ggatactgtc tgaaaatgga ggcttttcag
     4741 gaataggact cgctattcct tcgaacgcaa ttactaggat tgtcccatca ataattgaaa
     4801 agggaatttt ta
//
LOCUS       DASSIK010000301         2099 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1360780, whole genome shotgun sequence.
ACCESSION   DASSIK010000301 DASSIK010000000
VERSION     DASSIK010000301.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2099)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2099)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2099
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1360780"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(689..1579)
                     /locus_tag="VFI64_05660"
     CDS             complement(689..1579)
                     /locus_tag="VFI64_05660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HET7242811.1"
                     /translation="MQIAHINNTAGIASIIADGQKNYGNLVDVFVFNRKTQNLFGGTK
                     INYKFPVTRWNFLRKLQEYDVWHYHYPYGTLKRELERRNNAKIYLKHYHGDDLRGTQD
                     YDYCLVSTPDLLAHAPNGRWLPNPIMIQEIESIPKKKQTSRIPKIAHYPYYKNYSAED
                     YFTNVLSILRAEDKIELVEIFDMPHLLALNKMSECDIIIGKILPNIGWFGKFELEGMA
                     LGKPVIAFVSDILFEEYRPPIYRTSKDTFKYDLEFLIENEAERLRLGREGKAFVRKYH
                     SIDTALKIIEESYKKVAKSG"
BASE COUNT          631 a          395 c          357 g          716 t
ORIGIN      
        1 ggtttgaagg ttttggatta cgaattgaac ttaaggagat ctgttccgca ggaacatttg
       61 cccgttaatg taacaaccct gttgtcaaaa ttgtattcca gataattgtt cctctctgcc
      121 aaatcaacgg tgtcaaatat ttttagccaa tgcttcgtca gttgtaacga tcatggagat
      181 cgatatcgat cttttctaag acaatttatt ttagctgatt aatcggtaac acaataatga
      241 cctccagaag gtggtacaat cttaacaagt aaacggttta ccaatctaga gtaataaata
      301 aatgcagaat tcgacataaa atagcacttg aatcagcagg ctcaaattaa ctgttgtatt
      361 cagatgtgag tggaaagtgg tatctgtaaa gcccagaaca gaacactctt tttaggtgcc
      421 aaataaaaat gccgattcct tggatagcga tatcaatttc caacatgcct ttgtgattga
      481 ttgctgcatt cgtgcatgtt ggacctatat gttattcttg tttagtagga ttttatatat
      541 tatccattta cgtttaccct gacatctcaa atttggccat tttcttaacg ggggaaatat
      601 agacatcgtt tagagttctt tagaatactt tatgcaagca aacataaacg acaattggat
      661 tgtcatgaaa cgaattttat tttcatttct atccactttt tgctaccttc ttatagctct
      721 cctcaattat ttttaaagca gtatcgatcg aatggtactt tcgaacaaat gctttacctt
      781 ctcttcccag ccttaacctt tcagcttcgt tttcgataag aaattctaag tcatacttga
      841 aagtatcttt tgaagttcta tatattggag gtctatattc ttcaaaaagg atatctgaga
      901 caaaagctat aacaggtttt cctagtgcca ttccctccag ttcaaatttt ccaaaccatc
      961 caatatttgg caatatcttt ccaattatta tatcacattc actcatttta tttaaagcaa
     1021 gaagatgagg catgtcgaaa atttccacta gttctatttt atcttcagct cgtaagatac
     1081 ttaatacgtt tgtaaagtag tcttccgcgc tgtagttttt gtaatacgga taatgtgcta
     1141 tcttagggat tctgctagtt tgcttttttt ttggtatcga ttctatttcc tgtatcatta
     1201 ttggattagg cagccacctt ccattagggg catgggccag caagtcaggg gtagaaacca
     1261 aacaataatc ataatcttgg gttccacgca agtcatcacc atgatagtgc ttgagataaa
     1321 tttttgcatt gtttctcctt tctaactctc ttttcaaagt accgtacgga taatggtaat
     1381 gccagacatc atattcttgg agctttcgca agaaattcca tcttgtgacg ggaaatttat
     1441 aattaatttt tgttcctcca aagagattct gcgtttttcg attaaataca aatacgtcca
     1501 ctaagttgcc atagttcttt tgcccgtccg cgataataga agcaatgcct gccgtattgt
     1561 ttatgtgagc gatttgcata cagtctaata ttagttaact tcacaacaat tacttatttc
     1621 tttacgaaca agtcgatcag atgtaccatt cgtttgacaa tgtttcaaat ataggaaaat
     1681 tgtgggaatg tgcgtcttta tcttgaatgc catggaagag acccgattcc agtccaaagt
     1741 acactactat tacgatagaa tttcgatggt gactatcatc tacaaatatt gacttcggcg
     1801 caacagtctg atttaataca atgtaactgc tgaaactttt gatcgatacc ctggaaaatt
     1861 aactgttatt tttgagcata agaagaccaa ggtcgttgta acctgcaaat ctaatccatg
     1921 tgcacaaatt tgtttgggac tgaacacctc ctaaacataa taaattccag aaatcgcaaa
     1981 taactgcacg gttagtcgct actctatcgg cttcagagct gaggggaagt ttcggaatag
     2041 caattttcca tttatctcaa taatcaataa taaaccaata ctgcataatt gttttaagc
//
LOCUS       DASSIK010000302         3665 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_649900, whole genome shotgun sequence.
ACCESSION   DASSIK010000302 DASSIK010000000
VERSION     DASSIK010000302.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3665)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3665)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3665
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_649900"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            81..626
                     /gene="cobO"
                     /locus_tag="VFI64_05665"
     CDS             81..626
                     /gene="cobO"
                     /locus_tag="VFI64_05665"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: protein motif:HMM:NF004637.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008817 - corrinoid adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HET7242812.1"
                     /translation="MRQMSTKNGLVIVYTGNGKGKTTAALGIVLRAVGHGMKVGMIQF
                     IKGEWYYGELTSARRLEPEFDLVAAGKGFVGIIDDDHHIQDHKNAAKVALDLIRKKMS
                     EKKYDILILDEINYAAKIGLISVSEMLDILKRRPKGMTLVLTGNYAPQEIIDLADLVT
                     EMREVKHPYKLGIKAEKGIDF"
     gene            751..1554
                     /locus_tag="VFI64_05670"
     CDS             751..1554
                     /locus_tag="VFI64_05670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S1 RNA-binding domain-containing protein"
                     /protein_id="HET7242813.1"
                     /translation="MVTEIAELPEEGELVIATIKEVTGHGAYVSLDEYNNMTAFLHIS
                     EIATGWIRNIERYIKPKQKTVLKVIRVHRGRVEVDLSLKQVSGEERKSKLIEVKKGEK
                     ASAFMEIIKKKNNLNDEQILELEDKILQKFDYVYDMFEVVARKGMEAIKSIDIPEDTK
                     SSIEEESKKIQIPEVEVRGSLEVTLRASNGVEMIRDILSSAKSERSNASIAITYVAAP
                     KYRIISRAENFKIAEKNMNNSIEKISMQIEKKGGTFRYTREDSKKRRDG"
     gene            1557..1733
                     /locus_tag="VFI64_05675"
     CDS             1557..1733
                     /locus_tag="VFI64_05675"
                     /inference="COORDINATES: protein motif:HMM:NF009623.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-protein complex protein Nop10"
                     /protein_id="HET7242814.1"
                     /translation="MKRLLRKCDYCSGYSISEICKHCGNQTHDAHPPRFSPEDKYIRY
                     RIAARYNATQEITD"
     gene            complement(1841..2143)
                     /locus_tag="VFI64_05680"
     CDS             complement(1841..2143)
                     /locus_tag="VFI64_05680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242815.1"
                     /translation="MIKQRTGLTIISFGVSLILLTLISLNLSGSSEAYAQATNMTQST
                     NVNDSIQSQNDNRSLIGSVINITNNTNPIGAAIQQMIQATSTSNATSTSNATNSTS"
     gene            complement(2412..3182)
                     /locus_tag="VFI64_05685"
     CDS             complement(2412..3182)
                     /locus_tag="VFI64_05685"
                     /inference="COORDINATES: protein motif:HMM:NF016906.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="right-handed parallel beta-helix
                     repeat-containing protein"
                     /protein_id="HET7242816.1"
                     /translation="MQRTTMSYMVATILTLAAVSGISMQSSVQMAHAQLASPACGQVV
                     KGNVTLTANLNCPGDGLIVGGDNTRIDLNGYSITGPGPDSSKVGIVVPNSDLVTVVGP
                     GTVRNFQAGILVTGSDGTNVKRVTFDGNKIAVFMTGTTNTVVEQNLIGPNSIGVAAHS
                     SDMVDVHANLMSSNSLAGVTFVNTDKSTVWANSIGGSANGIFLDSQSGKNSMKFNNVL
                     GNTLDINNADGLALNINDNEFLKNNCNTSNPVGTCVGT"
BASE COUNT         1178 a          605 c          735 g         1147 t
ORIGIN      
        1 ctattttttg aacgcattct ttactaaatc atattacatg ataagaaatg atattaaatt
       61 atatctcatc aactatgaaa atgaggcaga tgagtactaa gaacggtctt gttatagtct
      121 atactggcaa tggaaaagga aagacaacgg cggcattagg catagtattg cgcgctgtag
      181 gacatggaat gaaagttgga atgattcaat tcattaaggg agaatggtat tacggcgaat
      241 tgactagtgc aagaagattg gaacccgaat ttgatctcgt ggcagctggg aaaggttttg
      301 ttggaataat agatgatgat catcacatac aggatcataa gaatgcagca aaagttgctc
      361 tagatctaat caggaaaaaa atgtctgaaa agaagtatga tattctcata ttagatgaaa
      421 taaattatgc tgctaagata ggattgattt ctgtgtcaga aatgctagat atcctaaagc
      481 gtagaccaaa aggcatgaca ttagtactaa ctggaaatta tgcaccacag gaaattattg
      541 acttggcaga cttagtaact gaaatgaggg aagtaaaaca cccgtataaa cttgggataa
      601 aggcagaaaa aggaattgat ttctaattct tattttcaat gctttttgtt tttttttttg
      661 cttgaattat ttccaaatca atatagttat gattggcaat tttaataggg gcaacgttaa
      721 agtatctcaa tgacagggta aaacgtgcac atggtaacag agattgcaga acttcccgag
      781 gaaggagaac ttgttattgc tacaattaaa gaagtcacag gccatggtgc ctacgtatct
      841 ctagatgaat ataacaacat gacggcgttc ttacacatat cggagatagc aactggatgg
      901 attcgaaata tcgagcgtta tataaagcca aaacagaaga cagttttaaa ggttattaga
      961 gttcaccggg gcagagtaga agtagacctt tccttaaaac aggtgtctgg agaagagagg
     1021 aaatccaagc taattgaggt caagaaaggt gaaaaagcct ctgcgtttat ggagattatc
     1081 aaaaagaaaa acaacctgaa tgacgagcaa attctggaat tggaagacaa gattttgcaa
     1141 aagtttgact acgtgtacga catgtttgaa gtggttgcta gaaaggggat ggaagcaatc
     1201 aagtcaatag acatccctga agacactaaa tcctcgatcg aggaagaaag caaaaaaatc
     1261 cagatccctg aagtggaagt tagaggctca cttgaagtaa cattgcgagc gtcgaatggg
     1321 gtagaaatga ttagagatat tctttcttct gcaaagtcag aaagaagcaa tgcaagtatc
     1381 gctattacgt atgtggcagc cccgaaatac agaattattt caagggcaga gaattttaag
     1441 atagcagaga agaatatgaa taattcaatt gaaaaaatat ctatgcagat tgaaaagaag
     1501 ggtggaacat ttcgatatac tcgtgaagat tcgaagaagc gtagagatgg ttgaagttga
     1561 aaagactact aagaaagtgt gattactgct caggttattc tatatccgaa atatgcaagc
     1621 attgtggaaa tcaaacgcat gacgcccatc ctccgagatt ctcacctgag gataaataca
     1681 ttcgatacag gatagcagct agatataacg caacacaaga aataactgat tgatatttgt
     1741 cggtacggcc gctctgcagc gatgaaactt acgtcagaag atcttgatgc cacttctcga
     1801 attcactaag ctagaaaacc aatacgaatt aagtgtagag ttaggaagta ctattagttg
     1861 cgtttgaagt tgaagttgcg tttgaagttg aagttgcctg tatcatctgt tgaatcgctg
     1921 ctccaatagg attagtatta ttagttatgt taattacact accaatcaga gatctattat
     1981 cgttttgaga ttgaatggaa tcattgacat ttgtactttg ggtcatattt gttgcctgag
     2041 catatgcttc acttgatcca gataaattga gggagatcaa agttaacagg ataagactaa
     2101 ctccaaagga aataatagtc agccccgttc tttgttttat cattgattta tcggtaccta
     2161 tctatgatat ataaatttct gcctatggtt attgacaaaa gtaatagtgg ttgtaacaat
     2221 aggaggacat tgtatcagat ttgtgcaaga acttgctaaa tatagctcct tagctagaaa
     2281 ttggtagcaa atgataaata aagtgtctat tataacgaag gtttttgatg agttaaaaaa
     2341 agaataaaaa aatggaggtt tccgcactca gtttgtaggg atgttcttca attagttttc
     2401 ttattggttg cttaagtacc gacgcatgtg cccacaggat tgctagtatt gcagttgttc
     2461 tttaggaact cattatcgtt gatgttcagt gccagtccat ctgcattatt gatatccaag
     2521 gtgttgccta agacgttatt gaatttcatc gaattctttc cgctttgtga gtcaaggaat
     2581 atcccgtttg cacttccacc aatgctgttt gcccagactg ttgatttgtc agtgttaaca
     2641 aatgttacac ccgcgagact attgcttgac attaggtttg cgtgcacgtc taccatgtcg
     2701 ctagagtgtg ctgctacgcc aatgctgttt ggacctatca agttttgttc aactacagta
     2761 tttgttgttc ctgtcataaa gactgcgatc ttgtttccat cgaaggtcac tctcttcaca
     2821 tttgttccat cagatccagt tactaatatg ccagcttgga agttacgtac tgttcctggt
     2881 cctacaactg taactagatc agaatttggt actactattc caactttgga gctatcaggg
     2941 cctggaccgg ttattgagta accgttgaga tcgattctag tattatctcc accgactatg
     3001 agaccatcac caggacagtt tagatttgct gtcagagtga cattaccctt gacaacctgt
     3061 ccacatgctg gacttgctag ctgagcgtgt gccatttgta ctgaagattg catcgatatt
     3121 ccacttactg ctgccagtgt caatattgtt gctaccatgt atgacattgt tgttcgttgc
     3181 attcattata cgccttgaaa attaactatt tatgtgaaac tcttatttgt attgtaactt
     3241 agtaatagta taagtggttg ttctactata tgtaatcaac tggtaaattt ttgctaacta
     3301 acatagattt caatttaaga atccttatag catacaaata tctctttcct atcacaatta
     3361 ttacaaggac agaactcatt acatagcata catctaatgt atccttattc aacgtagatt
     3421 aaatttcgta ccaaaaattc tttacaatca gagaaaagaa attttattct atttgtattc
     3481 ttagtttctt ctccattata ttatttacta ttaatttatt gcactatgta tttcgttcca
     3541 tcatttttga acttactacc ggagaatcat ttgctttcta tgattgttat gaataattga
     3601 cattttggtt caaatttgct atatttgtat ttactgtcac tcttcatcct tccctcaaca
     3661 agaat
//
LOCUS       DASSIK010000303         3065 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1460670, whole genome shotgun sequence.
ACCESSION   DASSIK010000303 DASSIK010000000
VERSION     DASSIK010000303.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3065)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3065)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3065
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1460670"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            311..979
                     /locus_tag="VFI64_05690"
     CDS             311..979
                     /locus_tag="VFI64_05690"
                     /inference="COORDINATES: protein motif:HMM:NF012355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HET7242817.1"
                     /translation="MKKTTKKELIGRSVLVVALVAVGISGTGLLLSYPILSIFGNTPR
                     LVSNAYGASDSVFGDTVSSTNTDNNNDNPKDDSTNHGKDQNKEKEQNGKETTTTSSSN
                     IAPQVSSSSDNSQASLSSTDDNTASAPGIQNVSIVGIKSDKSFNPNPINIDAGDSVTW
                     TNSDNDIHTVTSGSDEGPSIGQEFDSGTLGEAQSFTHKFENPGTYEYFCSIHPSMVGK
                     VIVK"
     gene            1561..2955
                     /locus_tag="VFI64_05695"
     CDS             1561..2955
                     /locus_tag="VFI64_05695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HET7242818.1"
                     /translation="MKDQIETINPATAETIRSYDIMDTEAIKRVTQDARGAFGKWKNI
                     DLSERATYMRSLGRIMRKNKEQYAKIITEEMGKPLRQSIAEIEKCAWVCDYYSEHAEP
                     FLRDELVPTEFRKSFVSFEPLGVIACIMPWNFPFWQVMRFAAPVVTAGNVAILKHSSV
                     CLGSSLEIAQAFRDAGFPENVFQVVLGDYRTGESLVQSDIDAVSVTGSVSTGKRVGEL
                     ATRGLKKFVLELGGSDPFIVLEDADLNQTAHMAAQSRLLNTGQSCISAKRFIVVKEVV
                     KKFTDLFVEETKAEVVGDPMDYRTTVGPLVRENQRTTIDEQVQEARSHGAEILLGGRR
                     IESKGFFFEPTVISKVNHDMRVLKEEVFGPVAPILVVENEEEAITEANNSEFGLGASI
                     WTNNIEKGVRLAKRIQSGIVSVNEMVRSDPRMPFGGIKNSGIGRELSEFGIKEFVNIK
                     SVVVKDISSRLLVE"
BASE COUNT          994 a          539 c          659 g          873 t
ORIGIN      
        1 taacagccga tgtttctcat tttaaaagaa aagtaggttt catcctctcc accgcatctt
       61 atcaacacgc cattaagatt tagtgaatta tcaaacatcg caggaagtgt gagtaattct
      121 agagtgatgt tataacatca atgttacatc aatggtcgca cttgcatcaa gctctactgc
      181 tatttggtca acacattttg ctttccagag ttcgggtgtt tctcacttag gtgttgtcag
      241 ttttcaattc ttagtctaag atacattacc tccgagtata aattgtgatt atttaacggt
      301 tcagattgct atgaaaaaaa ctacaaaaaa agaattgatc ggacgatcag tacttgttgt
      361 cgctctcgtt gctgtaggta ttagtggtac gggactattg ttatcttacc ccatactttc
      421 tatatttgga aatacacctc gactcgtctc gaacgcatat ggtgcgtcgg actcagtttt
      481 tggcgatact gtatctagca cgaatacaga taacaacaat gacaatccca aggacgacag
      541 caccaaccac ggcaaggacc aaaataagga aaaagaacag aatggaaagg aaactactac
      601 tacatcttca tcaaatattg ctccgcaagt tagttcaagc agtgataatt ctcaagcatc
      661 cttgtcatca actgatgaca acacagcatc tgcaccgggg atccaaaatg tatccatagt
      721 aggtataaag agcgacaaat catttaatcc aaatccaatt aatatcgacg caggggattc
      781 cgttacttgg acaaatagtg ataatgatat ccataccgta acatctggaa gtgatgaggg
      841 accatccatt ggccaggaat ttgattcagg caccttaggc gaagcacagt cttttactca
      901 taaattcgaa aatcctggaa cgtatgaata tttctgcagt atacatcctt caatggtagg
      961 aaaagtcata gtcaaataga aagaattaat gacgatgaga tggggcaact ctttttctta
     1021 ttggttacgg accattagaa aaggttggtt tcttcatctt tattcattaa tatctttttt
     1081 ctatctacct ttttttagca tcattatatg taagatctac gagcaaatct ccaaatctac
     1141 ctggtggcta tcaatacttg tatttgtcca actatgttat tttctctatc gcagaaaatg
     1201 aaattgctaa acgagatggg catatcaagt caaaaatggg atgggggaat cgagtcaatc
     1261 cctgagatca aagggcatta tagcggttca tgttgttata taatttgact ggacgatttg
     1321 acaggtgcca taaaaagtgc gcttatgtct attgtagttg atgctgatta tttccgaccc
     1381 taaacccctt acgaagtcat taattgcggg acaaacaaac tattactatc ctgtaagtag
     1441 ctccagatat ttttgtcttt catagtagcg atttaagcat cataattata tttattcgta
     1501 aaggactcgt aaatccaaaa agaaaggaca aaaatagggc taaaatgata tgaaattaag
     1561 atgaaagatc aaattgaaac tattaatccc gcaactgccg aaaccattag atcttatgat
     1621 attatggaca ctgaagcgat taaacgcgta actcaagatg cgagaggagc gttcggtaaa
     1681 tggaaaaaca tagatctttc tgagagagca acatacatgc gaagtcttgg aaggataatg
     1741 agaaagaata aggaacaata tgccaagata atcaccgaag agatgggaaa acctctgagg
     1801 caatcaatag cagagattga aaagtgtgcc tgggtatgtg actattattc agaacatgct
     1861 gaaccctttc taagagatga gttggtccct acggagtttc gtaagagctt tgtatccttt
     1921 gaacctcttg gagtaatagc gtgtattatg ccatggaatt ttccattttg gcaggtcatg
     1981 aggtttgcag cccctgtagt tactgcaggt aacgttgcaa tattgaaaca ctccagtgtc
     2041 tgcttaggaa gctcccttga aatagcacaa gctttcaggg atgcaggttt tcctgaaaat
     2101 gtttttcaag tcgttttggg tgattatcga accggagaat ccctcgtcca atctgacatt
     2161 gatgcggttt ctgttacagg aagtgtaagc acagggaaaa gggttggaga acttgcaacc
     2221 aggggcttga agaagtttgt tctggagctt ggaggcagtg acccatttat tgtcctggaa
     2281 gatgcagatc taaatcagac tgcacatatg gcagctcagt ccagactact gaacaccggt
     2341 cagagctgca tttcagcgaa acgattcata gttgtaaagg aggttgtcaa gaaattcacc
     2401 gacctttttg ttgaagagac aaaagcggaa gtagtaggag atccgatgga ttatagaaca
     2461 actgtgggtc cactggtaag agaaaatcaa aggactacca ttgatgaaca ggtacaggag
     2521 gcaagaagtc atggagcaga aattctgtta ggtggaagac gaatcgaaag taaaggtttc
     2581 ttttttgaac ctacagtgat ttccaaagta aatcatgata tgagggtgct gaaagaggaa
     2641 gtatttggac ctgtagctcc tatcttagtt gttgaaaatg aagaggaagc gataacagaa
     2701 gccaataact ctgaatttgg tctaggagca agcatatgga caaacaatat cgagaaggga
     2761 gtaaggcttg ccaaaagaat tcaaagcggc atcgtttctg tgaatgaaat ggttagatcc
     2821 gatccaagga tgccctttgg cggtatcaag aattctggaa tagggagaga gttatcagaa
     2881 tttggtatca aggaatttgt aaacattaaa tctgtggtag tgaaggacat atcaagtagg
     2941 ctccttgttg aataagttat tgaagaaaaa tggtaaaatt ctcagatacg gatcccttga
     3001 atcactcaat aagaatttct ttttgatgaa gcaaattgac cttggaatcc aaattcattt
     3061 tttag
//
LOCUS       DASSIK010000304         4532 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_63579, whole genome shotgun sequence.
ACCESSION   DASSIK010000304 DASSIK010000000
VERSION     DASSIK010000304.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4532)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4532)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4532
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63579"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..248)
                     /locus_tag="VFI64_05700"
     CDS             complement(<1..248)
                     /locus_tag="VFI64_05700"
                     /inference="COORDINATES: protein motif:HMM:NF019301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HET7242819.1"
                     /translation="MNSPQLIKFGPLPIRILAGLTLMLHGLPKITDISGVQSFFPNIG
                     LPPELAIPVALLEVIGGFAILFGILTRIASGLFIIEMIG"
     gene            complement(1148..2398)
                     /locus_tag="VFI64_05705"
     CDS             complement(1148..2398)
                     /locus_tag="VFI64_05705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008519 - ammonium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0072488 - ammonium transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HET7242820.1"
                     /translation="MPIDTGNTAWMLVASSLVLLMIPALGMFEAGLLRKKNTVSIFMQ
                     IFFGLALLSVMWFIFGFSLTFGPDTAGLVGNLDWTFLKGVPFNDSLANYAPTIPGVLF
                     AKFEMMFAVITPLLLTGAIAERMKFSAFIIFIAVWSFLIYYPLVHWIWGGGWLGKLGV
                     VDFAGGIVIHTSAGMGALAAALILGRRLNYGPAIMVPHSIPLAVLGSALLWLGWFGFN
                     AGSALASGGVAGNTVINTHMASSVSALIWVGLSWLRTGKPSIIAAINGAIAGLAGITP
                     ASGYVSVEHAFLIGIAVGIASYLGVIFLKDRLKIDDALDVSSVHGIAGIIGSLAIGIF
                     ASSIINPMGPNGLLYGNPSQLLIQAIGVGVAGVMGFFGTYAILKVIDVLIGIRVSAKV
                     EQEGLDISEHAERAYSDEDEFERD"
     gene            2459..2821
                     /locus_tag="VFI64_05710"
     CDS             2459..2821
                     /locus_tag="VFI64_05710"
                     /inference="COORDINATES: protein motif:HMM:NF012753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030234 - enzyme regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006808 - regulation of nitrogen
                     utilization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HET7242821.1"
                     /translation="MFLRQEYDINFLIKAEIVIPQNDVQAIDEALKQIHVGGITVFKV
                     KGRGKSIGPSIHASKGTEIFTPEFNDKYILQVVVPDEKENDVIKIVRTNSKMGKIFIS
                     RIKRAIDIGSGQENEQAI"
     gene            2954..3460
                     /locus_tag="VFI64_05715"
     CDS             2954..3460
                     /locus_tag="VFI64_05715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242822.1"
                     /translation="MAISSREHIINRDRLLEVENYDQTFELVKYAVSAVFDMRRAGLS
                     LILQGMPSGLGAYHILGSNVIVLNRFVLEIIKNTGRSIEEYNSYLFTVLAHEYLHSFG
                     ILEECTVRKMILELCKNFFGEDHPTNLLAKDPVSLFPQLRHIFSDKFENRFEIVKEFD
                     KSNQYYIQ"
     gene            3974..4450
                     /locus_tag="VFI64_05720"
     CDS             3974..4450
                     /locus_tag="VFI64_05720"
                     /inference="COORDINATES: protein motif:HMM:NF012436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HET7242823.1"
                     /translation="MSKSTNSEPADAEGVPSSSKEEIIRGLNDDLAREYKAIIQYVVF
                     SSTLKGAEYGDIAEQLKIHASQELSHALELARQIDYLGGDPTVKGKEAEYSGDSKMML
                     EIDLRAEQETIKNYRERIRQAERAGEFALSEKLRTIIAQEQDHEIDLKDALGLRRS"
BASE COUNT         1486 a          877 c          868 g         1301 t
ORIGIN      
        1 ccaatcatct caattataaa tagacctgaa gctatcctcg ttagaatacc aaacaatata
       61 gcaaatcccc ctatcacttc taaaagagcg acaggaatag caagttcagg tggtagacct
      121 atgttaggaa agaaactttg aactccagat atatctgtaa tttttggtaa tccgtgcaac
      181 ataagcgtca gtcctgccag tattctaatt ggcagaggcc caaattttat taattgagga
      241 ctattcatgc gtagaatcat tattttccat gcaatttaag ggctctgatt tgatgcatga
      301 aagtataaga cacatttgcc cctgcgggca aagcaaggat tcatacaaaa aatattccgc
      361 ctataacgtc ctaaacatag agtttttagt ttaatattga aatgagaatt acttggtgat
      421 ttgggtctct taaatgtccc ttgattgaat ccaatgtttt gaagaagcgg caggacatcc
      481 gataagcata catggattca acacgcatat ttgacctagt cttatcgcag ttatttattg
      541 taaagtgctg ctgattattt tgattacgca ctctttatta gtaaactctt tacatttgta
      601 gctatggcgc cattgaccat tcatgaaata ttccaagtgc ctaatattgt ccctatttgt
      661 tgtgatgcgc tcatgaccat tcttagcagt cgtagatcgt gccattattt caactcttct
      721 tctcatggta aacaaataag gtttgaaacc attcaataag aacgtttagt ctcaatcgct
      781 ccatgtttca aattacccat tatttgttca actagtaaaa taaaaaccaa aaatactaac
      841 agcaattcca taatcattta tggttattgg tggaaatggt ttttatcttg gtatcaaata
      901 ttttcttatc aatatatttt cgaaaggaat gttaacttta gccccgaaag ttggaagata
      961 atcgctatag tctgcatata tctatagaat tacttctagc gagagactgc taaaatatga
     1021 cacggatgaa aacgacatga gcattcttgg tgaagaggtt gccgaattga gattagtact
     1081 agatcttacg cattagtaac gtgcacctac aaatccgatt tttaatgctg ttgcgcttaa
     1141 ggcaaatcta atctctttca aactcatctt catcactgta tgcacgttca gcatgttctg
     1201 atatgtccag accttcttgc tctaccttgg ccgacactct tatgcctatc aaaacatcta
     1261 taactttcag gattgcgtaa gtgccaaaaa agcccataac tcctgcaact ccaactccaa
     1321 ttgcttgaat taaaagctga ctgggattac catataacaa tccattgggg cccataggat
     1381 tgatgatcga agacgcaaaa attccaatag caagtgaccc gataattcct gcaatcccgt
     1441 gtactgagct aacgtctagt gcgtcatcaa tctttaatct gtcttttagg aagattaccc
     1501 caagatagga ggcaatacct actgctattc ctatgaggaa tgcatgctca acacttacat
     1561 atcccgaagc aggagttatc cctgcaagtc ctgctatggc accatttatc gctgcaatga
     1621 tgcttggctt acctgttctc aaccacgata accccaccca tatcaaagcg gatactgatg
     1681 aagccatatg agtattgatt acggtatttc cagcaacacc acctgaagcc aatgcactcc
     1741 cagcattgaa cccaaaccat cccaaccata atagggcgga gcctagtacc gccagaggaa
     1801 tactgtgtgg aaccatgatg gctggaccat agttcaatct tctgcctagg attagagccg
     1861 cggcaagtgc gcccattcct gcgctagtat gaattacaat tccgccagca aaatccacaa
     1921 cccctagttt gcccagccat cctccacccc agatccagtg tactaatgga tagtatatta
     1981 gaaaactcca gacagctatg aatataataa acgcgctaaa tttcattcgc tcagctattg
     2041 caccagttag taacaatgga gtaattactg cgaacatcat ctcgaatttt gcaaatagga
     2101 ctcctgggat tgtaggagca tagttagcta aagaatcatt aaatggaact ccttttagga
     2161 atgtccagtc aagattacct acaagacctg cagtatcggg gccaaaggtt aagctaaatc
     2221 caaagataaa ccacatgaca ctcaaaaggg ctaatccaaa aaagatctgc atgaaaatag
     2281 aaactgtatt cttttttctg agtaagcctg cttcaaacat tccaagggct ggaatcatta
     2341 gcagtactag actcgaagct acaagcatcc aagctgtatt accagtgtct attggcaata
     2401 gtttttgtgt attttgtacc gctaatataa aaagatgtgc attatcaaac catagtaaat
     2461 gtttttaagg caagaatatg acataaattt cttgattaag gcagagatag taattcccca
     2521 aaacgatgta caagcgatag acgaagcatt aaaacaaatt catgttggtg ggataactgt
     2581 ctttaaagtg aaagggagag gcaagagcat cggcccttca attcatgctt ccaagggtac
     2641 tgagatattc acgcctgaat tcaatgacaa gtacattttg caggtggttg tacccgatga
     2701 aaaagaaaat gacgtgatta agattgtcag gaccaattcg aaaatgggaa agatctttat
     2761 ctcgcgcatt aaacgtgcaa ttgatatcgg gtctggtcaa gaaaatgaac aggcgatcta
     2821 ggtattacta tatgtcgttc gctcattgca acagatagat gatcttgata ggttgttatg
     2881 tgcgttatag tcgaactgca taaaattcta tacagttaaa tttggatatg acatatcaag
     2941 gaatagtaac aaagtggcaa tcagtagtcg ggaacacatc ataaacagag acaggctact
     3001 cgaagtagag aattatgatc aaacgtttga gctggttaaa tatgcagtat ctgccgtttt
     3061 tgatatgcga agagctggtc taagccttat tctacaaggt atgccttctg gtttaggcgc
     3121 ctatcatatc ctggggtcca atgtaatagt gctcaacagg tttgtattag agataataaa
     3181 aaacacggga agatctattg aagagtacaa ttcatatcta ttcacagttt tggctcatga
     3241 atatcttcac agctttggaa tcttagaaga atgcacagtt agaaaaatga tactggaact
     3301 ttgcaaaaac ttcttcggtg aagaccatcc taccaatttg ttggcaaaag atccagtgag
     3361 tctttttcct caacttaggc atatatttag tgacaagttt gagaatagat ttgagattgt
     3421 aaaagaattt gataaaagta atcagtatta tatacagtaa catatctatc ctcccaacat
     3481 acacgtttaa ttggactcaa tttagttacc aaacataacc tttatcactg caatccattt
     3541 cagatccaca acaattacat cttaaatgac atgattgtat tttatacatt ttattaccac
     3601 atttaaagca gttcaattta ataattacct cttaagtgca taatgatcat ggtttgattg
     3661 aacctgtcac tatcttagca tctgacatgt atatattaaa ggtatcttgg tcggttgcga
     3721 aaaggacaac catggtatta ttgacattag atgttataac taacaccagc atttccaaga
     3781 ttatgatttc cattctagcg ctaagtggct accgatattt cgtatttcgg cgatagaata
     3841 aacaagaggc catctatcta tcttaggcag ttatgctgtc tttacgtatt aagtcttgat
     3901 ctcattgcat aggaaaaagt aagtcaaaat taatttaaaa aagtttaagt cgcagggaga
     3961 tagacgtaaa gttatgtcaa aaagcacaaa ttctgaacca gcagacgcag agggagtgcc
     4021 atcttccagc aaggaagaaa tcatcagagg attgaacgat gatcttgcga gagagtacaa
     4081 agccattatc caatatgtgg ttttcagttc cacgttgaaa ggagccgagt atggagacat
     4141 agcggagcaa ttaaaaatac acgcgtcaca agaattgtcg cacgctctgg aactggctag
     4201 gcagatcgac tatttgggtg gagatcctac tgtgaaaggg aaagaagcag aatattcagg
     4261 ggattccaag atgatgcttg aaatcgatct gagagctgag caagaaacta tcaagaacta
     4321 cagggagaga atccgtcaag cagagcgcgc aggtgaattt gccttgtctg aaaaattaag
     4381 aactataatc gcacaagagc aggatcacga aatagatcta aaagacgcgc tgggattacg
     4441 gcgatcgtga tttgcaatat ttttgtcttc agagatgaaa tgagtatcaa acgaaatagc
     4501 atgacggtag aggagaaccc tataagtaaa at
//
LOCUS       DASSIK010000305         2371 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1461057, whole genome shotgun sequence.
ACCESSION   DASSIK010000305 DASSIK010000000
VERSION     DASSIK010000305.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2371)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2371)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2371
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1461057"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(467..2017)
                     /locus_tag="VFI64_05725"
     CDS             complement(467..2017)
                     /locus_tag="VFI64_05725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242824.1"
                     /translation="MFSNKKIGNSRTINYLNSSLLMLVSIIFLLLTTSMIQNPYVVGH
                     TYASLHQPQSPFSSSSASPDVSFLLPSPSLIQSPLESNQASCNEGQGEGCATTTSLAR
                     GIDFLSVCGNMTTDDLKTKTKEKSKDFTTSEVKNITKGSVKFIFINSYWTDNTILGGV
                     DAGSASGQSDGQSLAPVVRVESGPGEGESVLAIKLVNRGTVSLTSITGELNLPSGFQS
                     VVSPRNKDTSVALSSFPTTNGGEVDAGQTFILYFPVKILQNAKVGKEYNAQLTVHYFK
                     DTDKRKTNLEVEKNAKESSHLELTNQCSDNDDNTNKTRSNTDRDIDAKTVHTRFDSKS
                     QTINVPFELSGKVILDVIGSSQLQITTGNVTPSPNTINVLSAIPGVGNRLKLLINNDG
                     SATATGVIATVSARTEAATNNNIITPAIAGNISRNVVQQSSVIPVIILGGTTFNLGTV
                     PVAEGKEIDTVVFPNNLAAGTLETLNVQLVYNDAYGNKKITNQIVGIQILPSSPQSEL
                     TVTPVPSS"
BASE COUNT          693 a          447 c          479 g          752 t
ORIGIN      
        1 tgttactaga atagaaaacg caagaataac atagaccctt aatcccctat tataggtctt
       61 caattgcgga atgttcgtca gtttcagagg gggtagcgtg accatcgtac ttgcctgcta
      121 gtcctctata atagatcttg ccaaaaatga cccaatgtat cttgatttaa cattagcatt
      181 taaactcatt attttttaat cattttcaaa ctgctaatgc aagtagtcct tgtatcagat
      241 ttggtgataa gaagttagat gtgcgattaa cagttagaag aggcacaaat actgtttccc
      301 caatacccga tttagctatc acgttagatc tttctaattt gaagggcagc aacggggatg
      361 aaaacggcaa catatcagca atgatgcacc atacgactcc tattttaatg caagacaagt
      421 tgtttaataa taatgcgtaa catagttact caatttttcc cttgggtcat gaggaaggga
      481 ccggagtaac ggttaattcg ctttgtggcg acgaaggtaa aatctgaatg cctacaattt
      541 gattcgttat tttcttattc ccgtatgcat cgttatatac caattgaacg ttcaaagtct
      601 ctaacgtacc tgctgcaaga ttatttggaa aaacgacagt atctatttcc ttaccctcag
      661 ctacgggaac agtacctaaa ttaaaggtag tacctcccaa aataataaca ggtatgacac
      721 tcgattgctg aacgacattt ctggatatat ttccagctat ggctggggta atgatattgt
      781 tattcgttgc ggcttcggtt ctcgccgaga ctgtcgcgat aaccccagta gctgttgcag
      841 aaccgtcgtt attaattagg agctttaatc ggttaccaac accaggaata gcacttaaaa
      901 cattgatcgt atttggtgaa ggggttacat ttccagtagt aatttgaagt tgtgaggaac
      961 ctatcacatc taaaatgacc ttcccactca gttcgaaggg aacatttatc gtttgcgatt
     1021 tagaatcaaa acgagtgtgg accgttttcg cgtcaatatc gcgatcagta ttgcttcttg
     1081 ttttatttgt attatcgtca ttgtcagaac attggttagt gagctccaga tgagaactct
     1141 ctttcgcatt cttttctact tcgagattag tctttctttt atcagtgtcc ttaaagtagt
     1201 gaacagtaag ctgggcattg tattctttac ctactttagc attttgtaag atttttactg
     1261 ggaaatatag aatgaatgtc tgtcccgcat ctacttcgcc tccgttagta gtagggaagc
     1321 ttgatagggc tacagatgtg tccttatttc gaggagaaac gactgactga aatccagatg
     1381 gcagattgag ctcacctgtt atgcttgtta gagaaacggt acctcggtta actaatttta
     1441 ttgcgaggac ggattcacct tctcctggtc cactctctac tcttacgaca ggagctaacg
     1501 attgaccatc agattgtcct gaggcagacc ctgcgtcaac tcctcccagg atagtattat
     1561 cggtccagta agagtttatg aatataaatt tcaccgaacc ttttgtaatg tttttcactt
     1621 ccgaagtggt aaagtccttt gacttttcct ttgtttttgt cttcagatcg tcagttgtca
     1681 tattgccgca tacggaaaga aaatcaatac cgcgtgctaa ggacgtcgtg gttgcacagc
     1741 cttctccttg cccttcatta caactcgctt gatttgactc caaaggagac tgtatgagag
     1801 aaggtgacgg cagcagaaag gaaacgtcag gggaagcaga cgatgatgaa aacggcgatt
     1861 gaggttgatg gagcgaggca tacgtgtgtc ccacaacgta aggattttga atcatgctag
     1921 ttgttaacaa aagaaagata atcgacacta acataagtaa ggaactatta agataattaa
     1981 ttgtcctact attgccgatt tttttgtttg agaacattca gaaacgtatc ttgtaattta
     2041 tgtggctaga ttattatgtt tgatcaaagt atctgttata ataatatcga gtaaaattgt
     2101 ttttactgta tttataagta gtgattttat catgcaggcg ttgtatcatc aaggattgga
     2161 tattgatttt cgaacacttg catggcactg ataatgatcg caatatctaa aataatcaaa
     2221 tagcaaatga atagatacgt ctgtaaattt tgtatgtcac aaagaatcgt gcaattgaca
     2281 tgtggcagta gtaatccaga tacaaccact acttgcccta ttgcagtgtc ccgttcgcga
     2341 gaataaataa ataatcaacc tgattcgctt a
//
LOCUS       DASSIK010000306         2468 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_862571, whole genome shotgun sequence.
ACCESSION   DASSIK010000306 DASSIK010000000
VERSION     DASSIK010000306.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2468)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2468)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2468
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_862571"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(54..902)
                     /locus_tag="VFI64_05730"
     CDS             complement(54..902)
                     /locus_tag="VFI64_05730"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HET7242825.1"
                     /translation="MVKKTHNTYCIIGDPINHSLSPALHNAAFNSLGLDHSYIAYRVP
                     KEELANAIISLKSINIAGFNVTMPHKTAIIEYLDILDSTVERARAVNTVYNNNGKFEA
                     FNTDIVGFITPLHNRNVNFTGMTVLLLGAGGTAQAVVAALAEETGISKIYISSRNKGK
                     LENLAEVGTKSGLECVTLGENEIQEFSPLSDMIINATPVGMGGEASPVSFKHISKDAI
                     VYDIVYRPLNTDLILNAKKANAQVIYGYEMLMEQAIAAFKIWTGITPPVEAMKKALFG
                     GFGEPL"
     gene            complement(1371..1533)
                     /locus_tag="VFI64_05735"
     tRNA            complement(join(1371..1385,1417..1437,1496..1533))
                     /locus_tag="VFI64_05735"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1497..1499),aa:Tyr,seq:gta)
     gene            complement(1691..>2468)
                     /locus_tag="VFI64_05740"
     CDS             complement(1691..>2468)
                     /locus_tag="VFI64_05740"
                     /inference="COORDINATES: protein motif:HMM:NF012702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HET7242826.1"
                     /translation="GIKKIMLYGIPKTRNAKASEAWNPKGVVQRAVGRIKKNFGHKVE
                     VSTDVCVCQYNLSGQCGTMNSAGTDIDNDTSLIGIKTIALSHAEAGSDILAPSSMMDG
                     QVSCIRNCLRENGFRNISIMSFAAKYDSCLYSPFRSTAFDNYHQTSKINKSTYQLSCS
                     NIRQSLNEIQMDLNEGAKIIMVKPGIVSSDLIVAIKNRFNCPVAVQNVSGEYLMIKLA
                     SEKGLINEVEWALAYLIGMRRAGADMIMSYHVELISKYLE"
BASE COUNT          663 a          520 c          466 g          819 t
ORIGIN      
        1 aacagcattt actatcgata cagcaccatg tacaacggcg acagatctta gagtcacagt
       61 ggttcgccga atcccccaaa caaggctttt ttcattgctt ccaccggcgg ggtgatgcca
      121 gtccagatct taaacgcagc aatcgcttgt tccataagca tttcataacc atagataacc
      181 tgtgcgtttg ctttcttggc attcaaaatc aagtctgtgt tcaagggtct gtagacgata
      241 tcgtagacaa tcgcatcttt ggatatatgc ttaaagctta ctgggcttgc ttcaccgccc
      301 attcctacag gagtggcatt gattatcata tcactcaatg gtgagaattc ttgtatttcg
      361 ttttctccta gagtaacaca ctccagacca ctctttgtgc caacttctgc aaggttttct
      421 agcttccctt tgttcctgct actaatgtag atttttgata tgcctgtttc ctcagctaaa
      481 gctgctacga ctgcctgcgc tgttccgcct gcaccgagca ataacactgt cataccggta
      541 aagtttacat ttcggttgtg tagcggagtg ataaatccga ctatatcggt attgaatgcc
      601 tcaaatttgc cattgttatt ataaacagta tttacggccc ttgctctctc aactgtggag
      661 tccagaatgt caagatattc tattatcgca gttttatgcg gcatcgtcac attaaatcct
      721 gcaatattta tagatttcaa ggaaataatt gcgttggcaa gctcttcttt tggaacacgg
      781 tacgctatgt aagaatggtc aagtcccaaa ctattgaatg ctgcattgtg caatgcggga
      841 gacaaagagt gattaatcgg gtccccaatg atgcagtagg tgttatgagt ttttttcacc
      901 atatttttac tgtattcctg gtatggcctt cacataattt tctcatgaaa agaattttct
      961 tgtggacgaa cttagttatt gttcgttgta cgtgtaagag ttgcaagtaa ccaaaccttt
     1021 tttgtacatt aacagctcct tccgggattg cttcttgtaa gagtatcaag agatcagctg
     1081 tagctaaaga gacacagatt ctatccaatt tgaataagat cccaataact tctgtaatgt
     1141 agacagtatt taatttgatc ttctgtttat agcttggaat ttgtcctgaa atttaattta
     1201 taatgcaggg atttggttat gttcagcatc ttatacatga agtatatttt tacaacttca
     1261 attatcgaac aaaatatttt ggatatttta ttggtaaatg gagttggttg aaattgatgc
     1321 tcaaatttca gacgacgttc ccacatgtac atatagctct gcaaattgta tcccgcgggc
     1381 aggatctact ctagcttggc aataaccaaa tgctatttga gcctgcgact cttcggtcac
     1441 tgcaattgtt tgcccgatag gctgtttctc gtggtcagct ttaattagcc gactgctaca
     1501 gccgaaagct ctaccaggct gagctaccgc gggacatttt tcatgataat ttattgccat
     1561 ataattgtgt tgagtttact aatttaagat aattcttttg aatagcttga caaatgaagg
     1621 aaaattacca gtctaatatc tttatctgag tgaccttcca ggctcgttca cctagtggtg
     1681 gtcaagatac ctattcaaga tactttgaga tcagttctac atgatacgac attatcatat
     1741 cagcgcctgc tcgtcgcatt cctattagat atgcaagggc ccattcaact tcgtttatca
     1801 agcctttttc cgaagccaat ttaatcataa gatattctcc ggaaacgttc tgaacggcga
     1861 cgggacaatt gaatctgttt ttgatggcta ctatcagatc ggatgacaca atacctggtt
     1921 tgaccattat tatttttgca ccttcgttca aatccatttg aatttcgttc aggctctgtc
     1981 tgatatttga acatgacagc tgatacgtcg atttgttaat tttgctagtc tgatgataat
     2041 tatcgaatgc tgtcgatcta aaaggagaat acaaacatga atcgtacttt gcagcaaatg
     2101 acataatact gatattacga aacccattct ctcttaggca atttcgtatg catgagacct
     2161 gaccatccat catcgatgat ggagctaata tgtcggaacc cgcttccgcg tgactcaatg
     2221 ctatggtctt aatacctatt agggaagtgt cattgtctat gtcagtacct gcgctgttca
     2281 tcgtgccaca ctgaccagat aaattatatt gacatacaca aacgtccgta gatacttcga
     2341 ccttatgtcc aaaattcttt ttaatccttc cgactgcacg ttggactacc ccttttggat
     2401 tccatgcctc tgatgcctta gcattacgtg tctttggaat cccataaagc atgatctttt
     2461 ttatgcct
//
LOCUS       DASSIK010000307         2223 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_862918, whole genome shotgun sequence.
ACCESSION   DASSIK010000307 DASSIK010000000
VERSION     DASSIK010000307.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2223)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2223)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2223
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_862918"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(378..2012)
                     /locus_tag="VFI64_05745"
     CDS             complement(378..2012)
                     /locus_tag="VFI64_05745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242827.1"
                     /translation="MYPYFLNINPYPSSPTPALADSQILGGNTHKQARTAILSCIEDL
                     YSKLGSNPTDKDFRLITMIQDVGSGKTHLALHIRGLPELSTNTVTSYVDLSRVSPRDI
                     YNTYESILSGFSNEDVVTMREAIISMLSFKAEKNVGPARKIFKYGLSDRIAGKSFSDK
                     ARLVLQGKETMNYDYVDEVLRDEFSEIQIDLIKGIVGDKFRRDSANVRTLEGVINSLS
                     AIANLNFRLLNKLTIFQFDEFDSNKETLEIIKALINAHIPSSLLMLIMTPASYNEIKK
                     ENASVFDRMEKANYKIDLAGSNTVTELLDIIFEYIRHYDKINNFTPEHENELASRIRV
                     IYDEFPEFRNVRSILNILYHATENAARTNSFSIDEQSIDDTIKRNYPGLKIRGSLMDV
                     PLSEFIRIRKNSMSSDALESNVRDAIKNLLAYTTQTGSVTGVNIDNIIGNSIDVVYND
                     NYGTKIAVAVVVNKDHSKALAQISSAAKSLSLVDRLVVLTNTGTAVGENGTTVVNMDK
                     GKLIDLIYFNDKFKNEELLKDDLEKAIVLAKSMKLC"
     gene            complement(2017..>2223)
                     /locus_tag="VFI64_05750"
     CDS             complement(2017..>2223)
                     /locus_tag="VFI64_05750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242828.1"
                     /translation="GKSRGSLGWTELSEVRNEICAKNNLSSNKFYDLVEQLTNTYHDE
                     YELSTGGTEGIMVRGLLHGFVRGI"
BASE COUNT          614 a          437 c          374 g          798 t
ORIGIN      
        1 gttcggcaca cgcttctctg tatttcgagt taagggaccc atggattacc aatcctcttg
       61 tcttgttcat atcacgctga attgtggttt tatttaatgc aatataactg aatagctgga
      121 gcattcatct ggttgcggta cttgccatta cctcatactg aaatgcttaa aattaaaaaa
      181 agtatattgt tctttgcgtc caatttatcc tttattagtc taattgccat tgttatgaag
      241 gtcttgtaaa atgattacta aggaatcgtt ttagaattat tctcaatcaa cgatctatat
      301 ttttttacaa aaatgagatt atcttagaca tcaattatga ttgtctaaag taatcgatca
      361 agttgcattc attaacgcta acatagtttc atagactttg ccagtacaat cgccttctcg
      421 agatcatcct tcagtagttc ttcgttcttg aatttatcat tgaagtatat tagatctatt
      481 aactttccct tgtccatgtt cacgaccgtt gtaccattct cacctactgc ggtaccagta
      541 tttgtgagga ctacaagcct gtctactaaa ctaagtgatt ttgcggcact tgaaatttgg
      601 gccaacgctt ttgaatggtc tttgttcaca acgactgcaa ccgcaatttt agtaccataa
      661 ttatcattat aaactacatc tatactgtta cctatgatat tatcaatatt tactccagtt
      721 acactgcctg tttgggttgt ataggcaagt aagtttttta tggcgtccct cacattagat
      781 tctaatgcat cactgctcat ggaatttttt ctaatcctta tgaattcgga caaaggtacg
      841 tccattaaac tacctcgaat cttcaggcca gggtagtttc tcttaatggt atcgtctata
      901 gattgttcat caatagagaa tgaatttgtc ctagctgcat tttctgtcgc atggtatagt
      961 atatttaaaa tggatcttac atttctaaat tctggaaatt cgtcataaat cactctaatt
     1021 cttgatgcga gctcattttc atgctccggg gtgaaattat taatcttgtc gtaatgcctg
     1081 atgtattcaa atatgatatc cagcaactcg gttactgtgt ttgatcccgc aagatcaatc
     1141 ttatagttcg ctttttccat tctatcaaat actgaagcat tttctttctt tatctcgtta
     1201 tatgatgcag gtgtcattat aagcattaac aaggaagatg gaatgtgagc attaatcaat
     1261 gccttaatga tttcaagtgt ttctttgttt gaatcaaact cgtcgaattg gaaaattgta
     1321 agtttattta acagtctaaa attcagattt gcaatcgccg ataaactgtt tatcacgcct
     1381 tccaatgtac gaacgttagc tgaatctctt ctgaatttgt ctcctacaat tcctttaata
     1441 agatcaattt gtatttctga gaattcatca cgcagaacct catctacata atcgtaattc
     1501 attgtttctt tgccttgtaa taccaatctt gctttatcag agaaactttt acccgcgatc
     1561 ctgtctgaaa gtccgtactt aaagatcttt cgtgctggac cgacattttt ttcagctttg
     1621 aatgataaca tactgattat tgcctcacgc atggtgacta catcttcgtt actaaatcca
     1681 cttagtatgc tttcatacgt gttgtaaata tcccttggcg aaactctaga gagatctaca
     1741 tatgatgtga cagtatttgt ggatagctct ggaagaccac gaatatgcaa tgcaagatgg
     1801 gttttgccag aacccacatc ctgaatcatc gttattaatc taaaatcctt gtctgtgggg
     1861 ttactgccaa gcttactata tagatcttct atgcatgaca agattgcagt tcttgcttgt
     1921 ttatgggtat ttccgcctag aatctgactg tctgctagtg ctggtgtcgg actgctcgga
     1981 taaggattaa tattcaaaaa ataagggtac atgaagttaa atccccctca caaatccatg
     2041 gagaagtcct cttaccatga ttccctctgt cccccctgta gagagttcgt attcgtcgtg
     2101 ataggtatta gtcaattgtt cgactagatc atagaatttg ttggatgata gattgttttt
     2161 tgcacatatc tcatttctaa cttctgagag ttcagtccac cctaaagaac cccttgattt
     2221 acc
//
LOCUS       DASSIK010000308         2496 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1067863, whole genome shotgun sequence.
ACCESSION   DASSIK010000308 DASSIK010000000
VERSION     DASSIK010000308.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2496)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2496)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2496
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1067863"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(73..360)
                     /locus_tag="VFI64_05755"
     CDS             complement(73..360)
                     /locus_tag="VFI64_05755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242829.1"
                     /translation="MKKELPVIGIALSILLLVVTTSSVTAQNATTNASNAMNKTGEAV
                     NVTANELGKNASDAGSSLLNQTAEVGKKIVGGAATVLGNISGEIKEGVGAK"
     gene            763..1083
                     /locus_tag="VFI64_05760"
     CDS             763..1083
                     /locus_tag="VFI64_05760"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HET7242830.1"
                     /translation="MMQLYRDALSGTGHEVDGFIDSVDAYSRFQEDPDRYDAVISDVR
                     MERMSGVQLANKLKEVNKDVQIFVMSAIEFNEDHHSDLKEIELKEFRKECKDSYKYLI
                     GGKT"
     gene            complement(1190..1531)
                     /locus_tag="VFI64_05765"
     CDS             complement(1190..1531)
                     /locus_tag="VFI64_05765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242831.1"
                     /translation="MDYKEIYSKILSVEPNTRMVSVCDNDGKILFSEHREGVTNLLTP
                     EESKRSLEMAVNAWKTRSQLANKIGKGKYVLAEYEKIKRITMPLDDNHILYITTEVNA
                     DHDKIIKSVTK"
     gene            complement(1604..1996)
                     /locus_tag="VFI64_05770"
     CDS             complement(1604..1996)
                     /locus_tag="VFI64_05770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242832.1"
                     /translation="MNRNRNRNKSIHVMSCHVVVMTSNLKVKGKMASLTENRRLSWEM
                     IVWPLILELDRPFFTVREYQAKRDYVSGRYGIQISRIRSGFVSLIHRGFVIKGAVGYS
                     LNWELQKYIRKRTILGYASAAKSILRAY"
BASE COUNT          737 a          469 c          421 g          869 t
ORIGIN      
        1 ctggtggtaa gcctagcccg atttgtactc tttatacaaa gccagaaata aaaagaaatg
       61 aaatagggga acctactttg ctcctactcc ttcctttatt tcgccactta tgttaccgag
      121 gacagttgca gctccgccaa ctattttctt gcctacctca gctgtttggt ttaaaaggga
      181 tgagcctgca tcacttgcgt ttttacctaa ttcatttgca gttacgttta ccgcttcacc
      241 tgtcttattc attgcgtttg atgcatttgt agtggcgttt tgagctgtca cactgcttgt
      301 tgttacgacg agcaataaaa ttgacaaagc tattcctatg actgggagtt ctttcttcat
      361 tgacatgata tgagcacgat accatttaag tattgtatgt taaccctatc tttttcattt
      421 aattcatata attcacataa ttcacatctc tatcgtcagt gcagaacatg ttagcaactc
      481 taatatacat tggataagaa atagtatcga aggcgagtct tcaactggtt tggggtttat
      541 agttctctcc ccatgccagt tgttgatcta atcaagcact ggaggaggtt tttatttggt
      601 aaatgtatgg aataaatatc atttacaacc acgtttcttg aaattggtaa gcatttaacc
      661 attttccaat tgcttgttgg tctgctctgc cttatactta actcacatat attacgtata
      721 tctacagagt gtcacgaatt ctcagtttaa gatgaaacag acctgatgca gttatatcgt
      781 gatgcattaa gcgggacagg tcatgaagtc gatggtttca tagattctgt agacgcatat
      841 tcacgttttc aagaggaccc tgaccggtac gatgccgtaa tttccgacgt aaggatggaa
      901 aggatgtcag gagttcaatt agcaaataaa ctaaaggagg ttaacaagga tgtacaaatt
      961 ttcgtaatgt ctgcaattga attcaatgaa gaccaccatt cagatctaaa ggaaatagag
     1021 ctaaaggaat ttaggaagga atgtaaagat tcctacaaat atctgattgg tggaaagaca
     1081 taggcactaa ttatatttca taacattgca ccactaccaa tgagcaattt ttcagatttc
     1141 cctaatgatt aaaaaaaaga gtttaggcta tcttggcact aactcataat tacttcgtaa
     1201 cggactttat tatcttgtca tgatctgcat taacttctgt tgtgatgtac agaatatgat
     1261 tatcatctag cggcatagta attctcttta ttttttcata ttcagctaga acatattttc
     1321 ccttacctat tttatttgct agttggctac gtgtcttcca agcgtttacg gccatttcaa
     1381 gtgatcgttt actctcttca ggagtaagta aattagtaac cccttccctg tgttcggaga
     1441 ataatatttt tccatcattg tcgcacacgg agaccatcct tgtgtttggt tcaacactta
     1501 atattttgga ataaatttct ttataatcca tgtactagat atcttaatga ttctaataag
     1561 gttttgagat aatttcttgc aattattcta ggactggacc atgtcagtag gctctgagta
     1621 ttgatttggc agctgatgca tatcccagta ttgtccgttt acgtatatat ttctgaagtt
     1681 cccaattcag agagtatcct actgctcctt tgataacaaa tcccctgtgg atcaaagaga
     1741 caaaaccaga tctaattctg gagatctgta ttccgtatct tccagacacg taatctcttt
     1801 tggcctgata ttctcttact gtaaaaaatg gacgatctag ttcaagtatc aacggccaaa
     1861 ctatcatttc ccaagaaagt cgtctattct cagttaaaga cgccatctta cctttgacct
     1921 tcaagttgga ggtcataaca acaacatgac atgacatgac atgaatgctt ttgtttctat
     1981 ttctatttct attcatcaga ttctcctaat ttctgttaga attctttctt tagccctagt
     2041 attatgaggc ctagttctca gtctgacgct acaacaagga cagcgagttc catcaaacat
     2101 catgtaaatt ttacaatgta tacaacgttt taagccaatt aggtaaggac tacctctagc
     2161 aggccttacc accttgtatc gtatacacaa gtttctacaa tacacttctt gatacacttt
     2221 tgtatttaat aaaatttttt gaaaccactc tgcatgatag taaataagat ccgataattt
     2281 tttttctata gagcatagag taattagtgc tcttttgata ttctattttc ggtttaattc
     2341 gtttcatcaa aatagataaa cctaaaaggc gttataaggt acatttacga gtaatagata
     2401 aaataatcat caatggttag aataaaaagt atttggcaaa catttgagtt ctattattta
     2461 tttataattt tctatttttt cactcacttc atgctg
//
LOCUS       DASSIK010000309         2086 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1462546, whole genome shotgun sequence.
ACCESSION   DASSIK010000309 DASSIK010000000
VERSION     DASSIK010000309.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2086)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2086)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2086
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1462546"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            97..1971
                     /gene="dnaK"
                     /locus_tag="VFI64_05775"
     CDS             97..1971
                     /gene="dnaK"
                     /locus_tag="VFI64_05775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HET7242833.1"
                     /translation="MGKIVGIDLGTSNSAAAVLVGGKPTIIQAAEGTSVGGKAFPSYV
                     AFTKDGQLLVGEPARRQTITNPEGTVIAAKRKMGTDFKFKVYGKEYTPQQISAFILQK
                     IKRDAEAYLGETVDKAVITVPAYFNDNQRQATKDAGEIAGLQVVRIINEPTAASLAYG
                     LDKANKDLKILVFDFGGGTLDVTIMEMGGGVFQVKSTSGDTQLGGTDMDNTLVEFILQ
                     EFKNQSSLDVRNDKAALMRVREAAEKAKIELSNVITTEINLPFLAYEPSSGPKNLVLQ
                     LPRSKLEDLLRPIVERCRSPMMQALQDAKLNPADIDKIILIGGPTRMPIVRQLVANVM
                     GKEPEGGIDPMEAVALGAAVQGAIIAGDVSTDILLVDVTPLTLGVEVLGGLKEPLIEK
                     NTTIPTKKSKVFTTAADYQTSVTIHIVQGERSMASDCVSLGMFNLSGIPPAPRGVPQV
                     EVAFDIDANGILNVTAKDLATSKEAKITIAANNKLSKDELDRLKKESEQFADADKKKR
                     EEAELKNEADNLIYAAEKLVQQDLKDKIKPDQIEKANKSIQELRSAMSTNNIEEIKNK
                     TQILKNTIGEISAEAYRAASSAQTTAEKPGGSSSSESSATGPQGNFGNHDTQNPSNTT
                     "
BASE COUNT          724 a          384 c          475 g          503 t
ORIGIN      
        1 caaaaaagtt ttaagaccaa gcctagttat attgtcgaaa aagataattt caaataaaga
       61 tactgaacaa ccaaaaatgg agtaagtgaa ttcaatatgg gtaaaattgt tggaatagat
      121 ctggggacaa gtaattcggc agctgcagta ctagttggag gaaaacctac cataattcag
      181 gcagccgaag gtacatcagt tggaggcaag gccttcccgt catatgttgc gtttacaaag
      241 gacggtcagc tattagttgg tgagcctgct aggcggcaga ccattaccaa cccagaaggt
      301 actgtcatag ctgcaaaaag aaaaatgggt acagatttta aattcaaagt ttacggtaaa
      361 gaatatacac ctcaacagat atcggcgttc attttacaaa aaataaaaag agatgctgaa
      421 gcctatcttg gtgaaacagt tgacaaggca gtgataactg tcccagctta ttttaatgat
      481 aatcaaaggc aagccaccaa ggatgctggc gagatagctg gtctgcaagt cgttagaatt
      541 attaatgaac caactgccgc gtcccttgct tatggccttg acaaagcaaa caaggatcta
      601 aagatcctgg tctttgactt tggtggggga actcttgatg ttaccataat ggaaatgggt
      661 ggaggtgtat ttcaagtaaa aagtacttct ggtgacacac aactcggagg aactgatatg
      721 gataacactt tagtagaatt tattcttcag gaattcaaaa atcaatcatc acttgatgtg
      781 cgcaacgata aagctgcttt gatgagagta agagaagccg cagaaaaggc aaagattgaa
      841 ctctcgaacg taattacgac tgaaataaat ttaccatttc tagcatacga accgagtagt
      901 ggtcccaaga acctggtact ccaactgcct agatcaaaac tggaagattt gcttagaccg
      961 atagttgaac gatgcagatc accaatgatg caagcactac aagatgctaa attaaacccg
     1021 gctgacatag ataagatcat tcttatcgga ggacctactc gcatgccaat cgtaagacag
     1081 ttggttgcaa atgtcatggg gaaggaaccg gaaggaggaa tagatcccat ggaagcggtg
     1141 gctttgggtg cggctgtgca gggggcgata attgctggcg atgtatctac agatattctt
     1201 ctagtagatg taaccccttt gactcttggg gttgaagtct taggaggatt aaaagaaccc
     1261 ctcatagaga aaaatacgac tatacctaca aagaagagca aggttttcac gactgctgca
     1321 gattatcaaa catcagtgac aatccacata gtgcaaggtg aaagatcaat ggcctctgat
     1381 tgcgtttctc ttggaatgtt taatctatct ggtatccctc ctgcacctcg aggagtgcct
     1441 caggtagaag ttgctttcga catcgacgcg aatggtatac tgaatgttac agcaaaagat
     1501 ttggctactt cgaaggaagc aaaaatcact attgcggcca acaacaaact ttctaaggat
     1561 gaactggata gactcaagaa agaatcagaa cagtttgcag atgccgacaa gaagaagcgg
     1621 gaagaagctg aactcaagaa tgaagcagac aatctcattt atgcagctga gaagttagtt
     1681 caacaagatt tgaaggataa aataaagcct gatcaaattg aaaaagcgaa taaatctatt
     1741 caggaactga ggtctgcaat gtccactaac aacatcgagg agattaaaaa taaaacgcaa
     1801 attctgaaga atactatagg cgaaattagt gccgaagcat atagggcagc aagttcagcg
     1861 cagaccacag ctgaaaagcc tggaggttca tcaagttctg agtcttcagc taccggtccc
     1921 caaggaaatt ttggaaacca tgacactcaa aatccatcta atacaacgta attttgatca
     1981 caagggcatt cagggaattc cgtgataagg actaatgagt agtaaacgtg actattatga
     2041 cgttctaggg attgaaaaaa gctcaagtaa agatgaaata aagagc
//
LOCUS       DASSIK010000310         2500 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1068073, whole genome shotgun sequence.
ACCESSION   DASSIK010000310 DASSIK010000000
VERSION     DASSIK010000310.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2500
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1068073"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1371
                     /locus_tag="VFI64_05780"
     CDS             <1..1371
                     /locus_tag="VFI64_05780"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HET7242834.1"
                     /translation="IPAIPDLIHEFDISYSLSSWILTSYLIAGAVMTPIAGKLSDIYG
                     RKKVLLILMVIYTIGLSFGGLSSNFTILILARIIQGIGISMFSIAFSMILDEFPKRRL
                     ATAQGIIAAVFSGGAVIGLAAGGTIIEAFDWRATFLSVVPLSIMIIIIIRKLIHDEKG
                     IPVEASTLPNKDGISKSYSALDLKGALALTSTITSFLLAITFLESIKQSLYLITFLSI
                     ISLASLFCFILIERKSMSPLIDLKLLKDRIILPANILLMCLGCTLFMTYQTIAIMIKS
                     PTPFGFGGNSINIIQVQLPFMLILFLVAIISGFLISKLGNVKPTIIGSLISSIGFFSL
                     FLFHFSELSITINLIIIAIGISFTEVGAFNISTLFVPKQFSGISIGITTLLFLVGMSI
                     GPAISGMFMEQYRFNVDAVVGSYPSGEAYNLIFLTGALISIVAVALTLVVTRRVSITS
                     SIFVER"
     gene            1711..2202
                     /locus_tag="VFI64_05785"
     CDS             1711..2202
                     /locus_tag="VFI64_05785"
                     /inference="COORDINATES: protein motif:HMM:TIGR00040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HET7242835.1"
                     /translation="MRIALISDTHDNIDNILKATREFNERRADIVIHAGDYISPISVE
                     SFMGVKLIGILGNNDTDVPGLTSAFNKIGGELKGEIFESQYDGLNFAVYHGTNFNKKE
                     LLIKSAKYDVFICGHTHRTLSTTFGKTMVINPGTANGWFLGYKATAAIFDTTDRHIEF
                     INL"
BASE COUNT          772 a          437 c          479 g          812 t
ORIGIN      
        1 ataccagcta tacctgattt aatacatgag tttgatatat catattcttt gtcttcttgg
       61 atactgacgt cgtaccttat cgcaggtgca gttatgacgc cgatagcagg aaaattgtct
      121 gacatctatg gaagaaaaaa ggtattgctt attttgatgg taatttacac cattggtctt
      181 tccttcggcg gtttatcttc caacttcaca attctcattt tggcccgaat catacaggga
      241 attggcatat ccatgttttc aatagcgttt agcatgattc tagatgaatt tcctaaaaga
      301 aggctggcaa cggctcaggg aatcatcgct gctgtcttct caggtggagc agttataggc
      361 ctcgctgctg gtgggactat aatagaggcc ttcgattgga gagctacgtt tctatcagta
      421 gtaccgctat ccataatgat aataatcatc atccgcaagc tgattcatga tgaaaaaggt
      481 atccctgtag aagcatctac tctccccaat aaggatggaa tctccaaatc ctattctgct
      541 ctagatttga aaggcgcatt agcccttaca agtaccataa catcgtttct gttagctatt
      601 acatttctag aatccataaa acaaagtttg tatttgataa catttctttc aatcatttct
      661 ttagcctcac ttttctgttt catattaatt gaaaggaaat caatgtcacc tttaattgat
      721 ctaaaactct taaaagacag aatcatctta cccgcaaata ttctcttgat gtgtcttggc
      781 tgcacacttt ttatgactta tcaaacaata gcgataatga taaagagtcc tacaccattt
      841 ggtttcggag gaaattctat aaacataatt caagttcaac tgccttttat gttgatacta
      901 ttcttggtag ctattatttc aggatttttg atctcaaagc tcggcaatgt aaaaccgaca
      961 attattggaa gtttgatctc ttccataggt ttcttcagtc tgttcttatt ccatttttca
     1021 gagttatcga taacgattaa tcttatcatt atcgctatcg ggatatcttt cacagaagta
     1081 ggcgccttca atatttcaac tctctttgtt ccaaaacaat tcagtggaat atcaattgga
     1141 atcacaactc ttttgtttct cgtcggaatg tcaattgggc cagcaatttc aggaatgttc
     1201 atggagcaat atcggttcaa tgttgacgct gtggttggct catatccatc tggagaagct
     1261 tataatttga tatttctaac cggtgcccta atctctatag tagctgtcgc tcttacattg
     1321 gtagtaacta gaagagtatc gataacaagc tcgatatttg ttgaaagatg atatttttaa
     1381 atcatatcgg taaggtaaat tatggaggaa ctatggaggg tttatcattt agtaaaaatt
     1441 gggagtaatc acaggttgtt aggaaattgc ctctaaaact gttaagattt tacttgaagg
     1501 attttagcag tttgggagta tgcaagttat acccagagga gatgataatg tgcaggaatt
     1561 gatttggggc gatacacagg aacttgagct tcccgcttaa caaaagttcc tgtccaagtt
     1621 gtactcctga ttcttcaaaa aagggtacgt ataagacaag ctaagataca ataataatta
     1681 aatttgataa cgaattatta ttaatcgatc atgagaatcg cgttgatatc tgatactcat
     1741 gacaatatcg acaacatatt gaaagctacc agagaattta atgaaagaag ggcagatatt
     1801 gtcattcatg ctggtgacta cataagtcca atttctgttg aatcgtttat gggtgtcaaa
     1861 ctcattggaa tattaggaaa taatgatacg gacgttccag gactaacatc agcctttaac
     1921 aagataggcg gggaattgaa aggcgaaatt tttgaatcac aatatgatgg tttgaatttt
     1981 gcggtttatc atggtactaa tttcaacaag aaggagctct tgatcaaatc tgccaagtat
     2041 gatgttttta tttgcggaca tacgcacaga acattaagta caacttttgg aaaaaccatg
     2101 gttattaatc caggcacagc aaatggttgg tttcttggct ataaggccac cgcagccata
     2161 tttgatacca ctgatagaca tatcgagttt atcaatttat aatctaaacc ttaagaggac
     2221 tttatcctaa agtcgaagaa atgaccacta aaccagcaat ctccccaaga cgcaagtatg
     2281 acctgatttc agaggaaggt gtaagcccat cttaacgaat ttgatctcaa tttatttgaa
     2341 tgagaagatt ttaacttcta gacatttggt gacgaggtaa cgcatattat aagaatgatg
     2401 agatatgtag agtagaaagt gatttgaaga gggatggatt atatcatgat ctatgttctc
     2461 aagttctttc actagacagg cggattagat ttgccggaat
//
LOCUS       DASSIK010000311         6949 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1462788, whole genome shotgun sequence.
ACCESSION   DASSIK010000311 DASSIK010000000
VERSION     DASSIK010000311.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6949)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6949)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6949
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1462788"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..309
                     /locus_tag="VFI64_05790"
     CDS             <1..309
                     /locus_tag="VFI64_05790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242836.1"
                     /translation="KMEFRKARDLAIFIILGVGALTIIGVFSVPSIFADKCDKNEDNN
                     CNETEINQETWTDNRCKLENLDNDRSNENVHNSTLACVNAVRNLEDLATIPDQFAATS
                     "
     gene            467..943
                     /locus_tag="VFI64_05795"
     CDS             467..943
                     /locus_tag="VFI64_05795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242837.1"
                     /translation="MPRTKSQVSGGTTKTKAPEEEPFPEWAEEEIKSVKLGEPEIVTR
                     SGYFLDIYENDYKVDIQVYEALPDGRTIVEGLDVPKSMKITDFLKGTVYEFKINVSKG
                     SLSPQLTELLKSKYNLDMDSIYRFELQELQQMDVESDLPSSSFSSSEGNEQEDEEE"
     gene            complement(1129..1962)
                     /locus_tag="VFI64_05800"
     CDS             complement(1129..1962)
                     /locus_tag="VFI64_05800"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HET7242838.1"
                     /translation="MTGQQGRHQHKVIVITGASSGIGKQVAIDFAKEGVKGVAIVARN
                     RDRLNELAMEIQDTCECLVCPCDVSDKSAVISMARNVLDKFGNVDVLVNNAGYGILGK
                     VQVQSIEEIESITATNYLGMIYCTKAFLSSMLIRKNGHIVNVASLAASFGIPGLAAYC
                     GSKFAVLGFSESLSHELRGTGVGITVVSPIGVRTNFLNHPSFKKKNKGWNMRYSLNAT
                     TVSKSVLKASTSHRFEIVVPFFMRGAIWLKHTIPYITNPVIGKSFRRMMDLDNDTNNE
                     N"
     gene            complement(2207..3577)
                     /locus_tag="VFI64_05805"
     CDS             complement(2207..3577)
                     /locus_tag="VFI64_05805"
                     /inference="COORDINATES: protein motif:HMM:NF015651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysylphosphatidylglycerol synthase transmembrane
                     domain-containing protein"
                     /protein_id="HET7242839.1"
                     /translation="MKWRLVAIAASVVPFLFLFILTPVSPEDVFSVGVIPFICSVGAV
                     MVRILLQAYRFRYFIKHFIGPNLSSTGKIMEARMAGEFVTQTTPSYVGGEIVRIAWLI
                     KNGVSTGDAAWVATTEIIADVFAGTILAFIAGALALFHGGTFIGIVVILVTIPTFSFW
                     FLVVLFSAHRNIQLPHFATRLLQRFLSTERSLRIVTSTNIALSDLCKMSRTHFKSRKS
                     VKVFSVGIAMTFVAFLFQGVSFFVLANAVHEHIGLLESFMATSASTALATLPITIGGS
                     GLAELGIWAYISNLGGIPHFADILNDSQLSVVIAWRIATYHIPLVIMWICLMKITIGK
                     GSITIRTKDDKTSDDGNNIGTNGEIDTESPKIYSTNESPENSSHSSLSPSSSYSQSND
                     DPLHKPGSYKHSFSSGHPPRTPSDTPEHLDTISKKDTVDSIKNDNKQDNLKKNDKTDD
                     SENGKD"
     gene            3665..4438
                     /locus_tag="VFI64_05810"
                     /pseudo
     CDS             3665..4438
                     /locus_tag="VFI64_05810"
                     /inference="COORDINATES: protein motif:HMM:NF015018.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP/GTP-binding protein"
     gene            4431..5420
                     /locus_tag="VFI64_05815"
     CDS             4431..5420
                     /locus_tag="VFI64_05815"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004413 - homoserine kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006566 - threonine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HET7242840.1"
                     /translation="MTDIQDSASIQSCEAVAPSSTANIGPGFDVFGLALDLFHDKVTV
                     RKHETKTGKINIILSDKSNFNLKIPSDVNSNSAGLAVKKLCIESGIENDIELSVLKGV
                     PPGYGLGSSAASAAAAVMGVNHLFKIGFERKKLVEFAAEGEIASAGVRHYDNVAASLL
                     GGFVIARSSPRLEFTRIQPPGNLILVVAIPKLPVPEKKTEIARSVLPKQVPLNRVVEN
                     IANASMVVSGFLLNDVKMIANGIEDAIVEPTRKGLIKGFDKVKEYALNNGALAVTISG
                     AGPSIIAFSQSGEGVDASRIADSMRKGFLDSDIEANAYVCGPSNGAYIISEPA"
     gene            complement(5543..6409)
                     /locus_tag="VFI64_05820"
     CDS             complement(5543..6409)
                     /locus_tag="VFI64_05820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HET7242841.1"
                     /translation="MSNMKYIQVEPQEDIAIIRINRPEALNAMNTDVISELSRAIDIV
                     GVDDGIKVVIITGAGDRSFCAGADISYMVDIDPMTAERYASSAQSVLNKIEKLEKPVI
                     AAVNGFALGGGCELAMVCDLRIASSNAKLGQPEVTIGIPPGWGGTQRLMRIVGPAKAK
                     ELVFTGKMITADEAFQIGLVNKIVSLNSEDELSPEIPAGENDKEKEKVRAKSIAKQLN
                     IKLIAECISMAKEIAKNSSNAVKVSKMLINRGMDTDLDTGLRLEIYGWALCFAHEDRK
                     KMMTTFLNKGKK"
BASE COUNT         2059 a         1408 c         1370 g         2112 t
ORIGIN      
        1 aaaatggagt ttcggaaggc gagagatttg gccatcttta tcatcctggg agttggtgcg
       61 ttgacaatta taggagtatt ttcagtaccg tcgatatttg cagacaaatg tgataaaaat
      121 gaagataaca actgcaatga gactgagatt aaccaggaaa cttggacgga caatagatgc
      181 aaattagaaa atttggacaa tgatcgtagt aatgaaaacg ttcataacag cactctagcc
      241 tgcgtaaacg ctgtaagaaa tttggaggac cttgcgacaa tacctgacca atttgcagca
      301 acttcttaaa gttttttcct tacccataca tagcctattt tttccgaaaa tcccacgtat
      361 attttattta tagttgttat caactgatta tgacctaatc aattaagact tttacctaga
      421 aggtttttta tctggcggat tttgtacacc agtataaaga aaagacatgc caagaactaa
      481 aagtcaagtt tcaggtggga caactaaaac caaggcacct gaagaagaac catttccaga
      541 gtgggcagaa gaagaaataa aatccgtaaa gttaggtgag ccagagatag taacacggtc
      601 cggttacttt cttgatatat acgaaaatga ttataaagtg gacattcaag tctacgaagc
      661 actgcctgat ggtaggacaa tagtcgaggg attggatgta ccaaagagta tgaagataac
      721 tgattttctg aagggcactg tctatgaatt caaaataaat gtctccaaag gcagtcttag
      781 tccacaattg acggaacttc ttaaatccaa atataatctg gatatggatt ccatttatag
      841 atttgaatta caggagctcc aacaaatgga tgtagagtca gatcttccct catcatcatt
      901 ttcttcttcc gaagggaatg aacaagagga tgaagaagaa taatatctaa cagtagaaaa
      961 tatagtcgtt tatcttttaa taccggatag ttaattcagc tgactaactt ttattcatgt
     1021 ttcatattag tacgctgctt tcgctccgtt caattatttt tttcttctgt tctcctttac
     1081 ttgttagatt gttttctaga tttcttgatt gtcatcctat tcaatcattc agttctcatt
     1141 attagtatcg ttatctaggt ccatcattct tctaaatgat ttaccaataa cgggatttgt
     1201 aatataggga atagtatgct ttagccatat ggctccccgc atgaaaaacg ggacaactat
     1261 ttcaaatcta tgggaagtcg atgccttgag cacagatttt gacactgtag tagcatttaa
     1321 tgaataccgc atattccagc ccttattttt tttcttaaag gaaggatgat tcaaaaaatt
     1381 tgttctcaca ccaattggag ataccaccgt gattccaacg ccagtcccac gcagctcatg
     1441 ggacaatgac tctgagaaac ccaacactgc aaattttgag ccacagtaag cagccagtcc
     1501 gggtattcca aaacttgccg ctaaagatgc cacgtttact atatgaccat tttttcttat
     1561 cagcatagag ctaagaaagg cctttgtgca atagatcata ccaagatagt tggtagcagt
     1621 aatggattct atctcctcta tggactgtac ttgtaccttt ccaagaattc cgtatccggc
     1681 attgttgaca agcacatcta cattgccaaa cttatctaga acatttctag ccatagatat
     1741 aactgcagat ttgtcagaca cgtcgcaagg acatactaag cattcacatg tatcttgaat
     1801 ttccatggcc agctcattta atcggtctct gtttctagca acaattgcaa cccctttcac
     1861 accttctttg gcaaaatcaa ttgctacctg ttttcctatt ccagatgatg cacccgtgat
     1921 aactattact ttgtgctggt gtcgtccttg ttgtcctgtc atttttcagg ttacaatacg
     1981 cagagatagt ctaattgtta tatttgttct gtttgatgtt cctgtatttt tcccttactt
     2041 tactttcaaa attttgtatt tactcctcat gtatgcagtg tcacactcta ttttgtcgtt
     2101 gatagctacg attccacaag attgacttga tctttgatct gaaggtgtct gctttattaa
     2161 ttatacattt tattcaatgg tcgcatcagt acattaaccg tcatattcaa tctttaccat
     2221 tttcagaatc atcagttttg tcattctttt ttaaattatc ctgtttgtta tcatttttaa
     2281 tactatccac agtatccttc ttagaaatgg tatccaagtg ctctggagta tctgaagggg
     2341 ttctaggggg atgacccgaa gaaaacgaat gcttgtaaga gccaggtttg tgtagcggat
     2401 cgtcgtttga ctgtgaatat gaagatgaag gtgacaaaga agaatgagag gagttttcgg
     2461 gcgattcatt tgtagaataa atttttggcg actcagtatc gatttcacca ttagtaccga
     2521 tattattacc atcatcgcta gttttgtcat ctttggttct tattgtaatt gatcccttcc
     2581 cgattgttat cttcataaga catatccaca ttattacaag tggaatatgg tatgttgcta
     2641 ttctccatgc tatcactacc gacagctgtg aatcattcag aatatcggcg aagtgtggga
     2701 tacctccaag attggatatg tatgcccaaa tcccaagttc ggctaaacca gagccgccta
     2761 tagtgatggg cagtgtggcc agagcagttg aggcagaagt tgccatgaac gattcaagca
     2821 ggcctatgtg ctcatgtacg gcgtttgcaa gtacgaaaaa ggatacccct tgaaatagaa
     2881 atgcgacaaa ggtcatcgct ataccgacag agaacacctt gactgacttt ctcgatttga
     2941 aatgggttct gctcatttta cacaagtctg agagtgcgat attggtcgaa gtcactattc
     3001 gcaaggatct ctctgttgaa agaaatcttt gaagcaatct tgttgcaaag tgtggcagtt
     3061 gaatgttcct gtgagccgag aaaagtacca ccaaaaacca aaaactgaat gttggaatgg
     3121 tcacaagaat tacgactatc cctatgaatg tgcctccatg gaatagtgca agcgctcctg
     3181 cgatgaaagc caatatggta ccggcaaaaa cgtctgcaat gatctccgtg gttgcaaccc
     3241 atgcggcgtc accggtagaa acgccgttct taatgagcca ggcaattcta actatttcac
     3301 cacccacata ggaaggagtg gtttgagtca caaattcacc ggccatgcgg gcttccatta
     3361 tttttccagt agaactcaaa ttagggccga taaagtgttt aataaagtat ctaaagcggt
     3421 aagcctgcag aaggattctc accataactg ctcctacaga acaaatgaaa ggaataactc
     3481 caactgaaaa tacatcctca ggagagacag gagttaatat aaataagaac aggaaaggaa
     3541 ctacgctggc cgcaattgcc actaacctcc atttcaaaag ttgtcattgg attcatgaat
     3601 attaggcata taataattaa tagaaactaa atataatcag cctgttaatt cgatttgaac
     3661 acttttggac gccatttttg ttacaggtac tgcaggttca ggtaaatcat caattacttc
     3721 taaaatcgtt gaatggtata gtgataatgg agcgttcgct atcacgctga acctggatcc
     3781 aggtgtcatg caattaccct acaaaccgga tgtggatatt agaaattatg tagatattta
     3841 aaatctcatg actgaattta acttggggcc taatggggca ctgataatgg ctgccgacct
     3901 tgtcgcaacg aagctagacg aaatacaatc tgaagtagat ggcctaaatc ctgatcacgt
     3961 aattattgac actcctggac agattgagtt gtttgtctat cgcgcgagtg gtccttactt
     4021 tgtaacgaat tttcgatccg ataataaggt taacatcttt acacttgacg gcatgctagt
     4081 atccaccccc ataaactatg tttctattgc attaattgcg gcctcagtaa ggatgagatt
     4141 gaagatagca cagatagacg taatgacaaa aagggacctg attgcagaca gaatccaaga
     4201 catcatgaga tgggcatcat ccagattgtt actggaaaaa gcaatcgact ccgatgctgg
     4261 ccagcaacag actagcacag actataagat cctcaccagg gacattctac agagtatgta
     4321 caggaacggg gtcatgcaaa ctccgattcc attttccaat ctgacgatga acggcatgtt
     4381 gaacttgact ggttcgcttt caagagtgtt aagtcaagga gaggaaaaat ttgactgata
     4441 ttcaggacag tgcgagtatt caatcgtgtg aagctgtcgc accatcttca actgcgaaca
     4501 ttggaccggg ttttgatgtc ttcgggcttg ccctagattt attccacgac aaggtaactg
     4561 ttcgaaaaca tgaaacaaag actggaaaaa taaacataat tttatccgac aaatcaaatt
     4621 ttaatttaaa aattccatca gacgtcaatt cgaactcggc tggtttggcc gtcaagaaat
     4681 tgtgtataga aagtggaatt gaaaatgaca tagaactttc tgtattgaag ggggtgccac
     4741 ccggatacgg acttggaagt agcgcagcct ctgcagcagc tgctgtgatg ggcgtaaacc
     4801 atttgtttaa gattggattt gaaaggaaaa aacttgtaga atttgcagct gaaggtgaga
     4861 ttgcaagtgc tggcgtgagg cattacgaca atgtggctgc atcgctacta ggtggtttcg
     4921 tgatagcaag atcttcacct aggctggaat tcactagaat tcagccacct gggaacctta
     4981 tacttgtagt ggcaattcca aagcttccag tacctgaaaa gaaaactgaa atcgccagaa
     5041 gtgtattgcc aaaacaagta ccactgaata gagttgtaga aaacatcgcc aatgcgagta
     5101 tggtagtgag tggattcctc ctaaatgacg taaaaatgat tgccaatgga attgaggatg
     5161 ccattgtaga gccaactagg aagggtttga ttaaaggttt tgataaggta aaagaatatg
     5221 ccctaaataa tggtgctctt gccgttacga ttagcggcgc agggccttcc ataattgctt
     5281 ttagtcagtc aggggagggt gtggacgctt ctcgaatagc agattccatg cggaagggtt
     5341 ttttggattc tgatatagaa gcaaacgcgt atgtgtgtgg cccaagcaat ggagcatata
     5401 ttatttcaga acctgcctga atgtgactaa ccctgtcttt gatgatcatt tacgcatatc
     5461 tactgcagat gcagatttct acaaaatatg gaaaaagaaa attgacatgg atgaccttag
     5521 cttttccctt aatacttgcc atttactttt ttcctttgtt caaaaaggta gtcatcatct
     5581 tcttcctgtc ttcatgagca aagcacaacg cccatccgta tatctccaaa cgcaaacctg
     5641 tatcaagatc tgtatccatt cctctgttaa tcaacatctt gcttaccttt acagcattgg
     5701 agctgttctt ggcaatctcc ttggccattg atatgcactc ggcgattaac ttgatgttta
     5761 attgttttgc aatgcttttt gcccttactt tctctttctc cttatcgttt tctccagcag
     5821 gtatttcagg cgataattca tcttctgaat tcaagctgac gatcttattg accaacccaa
     5881 tctgaaatgc ttcatcggct gttatcatct tacctgtaaa tactagttcc ttagctttag
     5941 ctggtcctac aattctcatc aacctctgag ttccccccca tcctggtggt attcctatgg
     6001 tcacttctgg ttgtcccaat ttggcattgc ttgacgctat tctcaaatca cagaccattg
     6061 ccaattcgca accaccgcct aatgcaaatc cattgaccgc agcgatgact ggcttttcta
     6121 atttttcaat cttatttagg actgattgag cagaagaagc gtatctctcc gcagtcatcg
     6181 gatcaatatc taccatgtat gaaatatcgg cgccagcaca aaatgatcta tcccccgcac
     6241 ccgtgataat tacaacttta attccatcgt caacgcctac tatgtctatt gcccgtgaca
     6301 gctctgaaat cacgtccgta ttcattgcgt tgagagcttc tggtctgttg attcgtataa
     6361 ttgcaatatc ttcttgaggt tctacctgta tgtacttcat gttagacata gaggagtggc
     6421 aacctcacaa tcaattaaat cttatcaaga acaattccaa aaacattgtg ctactatctc
     6481 atgaagagga attgatacac ctgttccgag aattgcttta cttataactc gtcctcacaa
     6541 cgataacaat gagaaaaatg agaataccga ttagtccgtg tgtcgcaatg aatattaatc
     6601 aaaataaaat tttaggaact tttttgatat gggaataatt tgcaattacc caataaaagg
     6661 tctatcggtt tcttcctttt agctgtcaga tttgaactat aaagataaga gaaaaataaa
     6721 gaaatatctg ctctgatatg ttagtcactt taccgtctga acttgtttta acgaaatggt
     6781 tgtgctatgc gccagccatt ccgttcctaa gttcgactcc tttgtgatct gcatcttctg
     6841 cagccgtagc ttcagatgct gctttgtgca tctcagacat tgcacatccc atttgtgcct
     6901 ctggttttcc tctcctcata aggcctctat acagtcctgc ttcaagagt
//
LOCUS       DASSIK010000312         2914 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_766829, whole genome shotgun sequence.
ACCESSION   DASSIK010000312 DASSIK010000000
VERSION     DASSIK010000312.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2914)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2914)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2914
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_766829"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..518
                     /locus_tag="VFI64_05825"
     CDS             <1..518
                     /locus_tag="VFI64_05825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HET7242842.1"
                     /translation="FGKTMNSFAVGLQSFPSIAWVPFAILLIGLNDSGILFVVIMSSV
                     FSIMISTYSGIRNIPPIYIRSARNMGAKGISLFRHVMLPAATPSLIVGIRQGWSFAWH
                     ALVGAEMLITTLVGLGYILSVGREFSNMPQIIAAMIVIFTIGWIFDRLVFSKVDEKVR
                     DRWGLNQHTER"
     gene            884..1138
                     /locus_tag="VFI64_05830"
     CDS             884..1138
                     /locus_tag="VFI64_05830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242843.1"
                     /translation="MNYRLLLFVVVTAALSITVLTSTTENIQAKNQDKSISKICIDGK
                     CTVTISDSGINTTLTDKNMTKIDSLNSKMSSLKSMFDSIR"
     gene            1349..1804
                     /locus_tag="VFI64_05835"
     CDS             1349..1804
                     /locus_tag="VFI64_05835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242844.1"
                     /translation="MRISLIAIISAMVLAGVTLVTLSGQTVEAKTKSYQLTVYLDNAF
                     MPNHLPSFKIVVYNSDDKQILSEKVTPDFTNTYQTISPKSGYTIEDKSKQHPSQIKVC
                     AQESYSENGKAKTHDDCFPIQQDKAKTNWYTVFDYPLIEEFEVNEDEGT"
     gene            complement(2392..2778)
                     /locus_tag="VFI64_05840"
     CDS             complement(2392..2778)
                     /locus_tag="VFI64_05840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MscL family protein"
                     /protein_id="HET7242845.1"
                     /translation="MYLYRELAEQPPVEKKSFSKEYMAFLIAFGIIGLAIAFVIGQAA
                     SKLVTAFVNDIVDPTVGLFLPAGSLDNLAVNVTGIHGASSQFKYGDLISTIIDFLIIS
                     LIVFIAYKVLSKYKLLEDKTKPEEKK"
BASE COUNT          927 a          545 c          537 g          905 t
ORIGIN      
        1 aattcggaaa gactatgaat tcgtttgcag tgggccttca atcgtttccg agtattgctt
       61 gggtgccctt tgcaatactg ttaataggat tgaatgattc aggaatcctt tttgtagtga
      121 taatgagttc ggtattttct atcatgattt caacctatag cggcattaga aacattcctc
      181 caatttatat acgatctgcg cgtaatatgg gtgcaaaagg aatatcgctg ttccgtcatg
      241 tcatgttacc ggctgccacc ccttcactta tagtcggtat acgccagggc tggtcgtttg
      301 cgtggcacgc attagtaggt gcagagatgt tgatcacaac gctggtggga ttgggttaca
      361 ttctttcagt aggtagagaa ttctctaata tgcctcagat aatagctgcc atgatagtta
      421 tttttacaat aggatggata ttcgatagat tagtgttttc aaaggtagat gagaaggtac
      481 gtgatagatg ggggttgaac cagcatactg aaagatagct ttccaataca tagtacaacc
      541 agtcataacc atttaccaat caattaatcc atctccaaga tatctaatca ttggaatgaa
      601 tgcatttttg ccatgttatt gaactatgtc ctccatgatt tgcaaaattc ctaattgaat
      661 agttttacct taagtgatct tcataattct tagcagttga tatccagtgt gctctgcgaa
      721 ccagccccga aaaaaaaatt gttctttatt aatttttaga tgatcttctt ccgacaagag
      781 ataagtttgg aattcagaac aagtgtaggg gggatatgac gttaaatgtt ttactgtcaa
      841 ctcttgcgta cctcagaaat atccattcga ggcttactag aatatgaact atagactatt
      901 gttgtttgtt gttgtgacgg cagcactctc cataaccgtt ctaacttcaa caactgagaa
      961 tattcaggcg aaaaaccagg acaagtccat aagcaaaatt tgcatagacg gcaaatgtac
     1021 tgttacaatt tcggactctg gtataaacac aactcttaca gataaaaata tgactaaaat
     1081 agatagctta aattcaaaaa tgtcgtctct taaatcaatg ttcgattcaa tacgctagtc
     1141 acatctagcg taacacgaac aatatgtgga cctaatatag gttagatagt gttaatagcg
     1201 catctaaaaa gtcagtgacg agaatctttt atcattttgt ggtcataaga tatcggacct
     1261 tgtagtaaaa tattagaaaa atcctactcc aaattattcg aatcacctta aatttcactc
     1321 atttgatgac tataggatgg ggatttactt gagaatatca ctaattgcta tcatttctgc
     1381 aatggtcctg gctggagtaa ccttagtaac attgtcagga caaacggttg aagcaaaaac
     1441 aaagtcatac caattaactg tatatttgga caatgcattt atgccaaatc accttccttc
     1501 atttaaaatt gtagtctata actcggatga taagcagatt ctttctgaaa aagtaacacc
     1561 agatttcacc aatacgtacc aaacgatcag tcctaaatct ggctacacaa tagaagacaa
     1621 gtcaaagcag catcccagtc aaataaaagt ctgtgcacaa gaaagttatt cagaaaatgg
     1681 aaaagcaaag acacatgatg attgttttcc aatccaacag gataaagcaa agactaattg
     1741 gtatactgta tttgattatc ctctgataga agaatttgag gttaacgaag atgagggcac
     1801 ttaggcatca atgttactta ttaaccatac aataaactct tagtaactag ttaccaattt
     1861 ggcttgccat tattaagatc tagttcttca ttccatccac tttgtcagtt ttttggatca
     1921 attagaccgt atgagcgata gtccgcaagt cctcgttccg tcatatacga agaattgatc
     1981 tcctctccca tcatggactt tatggggtat cgccacaggg aaactactgg gcaatcggaa
     2041 cacgggtttc catcatggga ttatctgttt gcatactaat tctcgcagag tattctttct
     2101 cctgacattt aagaatcctg tttgcaccat gaattaagat tagaattctg tgaattttta
     2161 cagcagatta acttggatga gatgttcgaa catgtttaat tacataatac ggctggaata
     2221 attgcagtca aacctttcgt aataattcag tccttgtctc aaacttgttt gaacctaagt
     2281 atatggtgag acttgaaatc aaattaaatc aggaggagcc cccccgaact acaagcaaat
     2341 ttcgatgatc cgttcatcct taaagagcaa aagaggttaa agtcaaagtg actatttttt
     2401 ctcttctggt tttgttttgt cctctagtaa cttgtacttc gaaagcacct tgtatgctat
     2461 gaatacaata agggaaatga taagaaagtc tatgattgtt gaaataagat caccatattt
     2521 gaattgagac gaggccccgt gaatacctgt tacatttacg gccaaattat caagactacc
     2581 agccggcaaa aacaatccaa ctgtgggatc aacgatgtca ttaacaaacg cagttaccaa
     2641 tttggatgct gcttggccaa tgacaaacgc aattgctaac ccaatgattc caaatgctat
     2701 gagaaatgcc atatactcct tgctgaaaga ttttttctct actgggggct gttctgccaa
     2761 ttcacgatat aaatacatct aaggatatca ccattagtgt tgaataatgt tgacatcgga
     2821 atagttacca atatgacatg taattgtcag aatcactaac tttagttcat ttttctcgcc
     2881 agggttttcg aaatgttacg cacaacttct tcag
//
LOCUS       DASSIK010000313         2558 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1362761, whole genome shotgun sequence.
ACCESSION   DASSIK010000313 DASSIK010000000
VERSION     DASSIK010000313.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2558)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2558)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2558
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1362761"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            171..1565
                     /locus_tag="VFI64_05845"
     CDS             171..1565
                     /locus_tag="VFI64_05845"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HET7242846.1"
                     /translation="MKFGGRAVDSGEKVLHVANLIKNYKNRGREIVAVFSAVDGMTDE
                     ILRVSESVKKGNKTTIEDFLVKTRDAHVKIIEYSIKNKDLKSKVMDIIEKLLSEMADL
                     FNGIVILSEVTPKALDYLLSFGERLLAPIMVFTLLDLGIEAVFLTGKEAGILTDSNFG
                     EARPLMDTTKLRLKHNIEPILQSNKIPVITGFIGADQNGNVTTLGRGGSDYTATIIGA
                     SVDADEVYLWGDVDGLLTADPKIVKNSRVLKEVSFAEATELSLFGAKYMHPRALEPVL
                     DTKIPIHIRNTFNLDHKGTIISKKTSRSAQKIVKSIIAIRHTALIDVSGGVMVGTPGT
                     AARIFDALAKKKVNIMMISQSPSESSISMVVKKNDLDTATTTLDLTLLGTVIRNLKVN
                     DDVAVIAVVGSGMRGIKGVAAKVFSSVAKNNINVIMIAQGSSELNLAFVVNNSDCGNA
                     VISLHDSFELDKID"
     gene            1640..>2558
                     /locus_tag="VFI64_05850"
     CDS             1640..>2558
                     /locus_tag="VFI64_05850"
                     /inference="COORDINATES: protein motif:HMM:NF024258.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease SbcCD subunit D"
                     /protein_id="HET7242847.1"
                     /translation="MKFAHITDCHIGAWRNPKLRDLNLKAFEEAIMNCIDAAVDFIVI
                     SGDFFDANIPQLGPVKKAVELLRLAKSHGIQTYMIYGSHDFAMTNVSMIDILHSTDLF
                     IKPTEYEKDGNVIKLQFFTDPKTHAKITGISGRKMGLDKEIYENLDREGLELEDGFKI
                     LLLHKGISELTTDKALVKDCIPLSYLPRGFDYYGGGHIHKRMEGNMGESKIVYPGPIF
                     GSTFEDLEQTAKGERRGFYIITFDKKLTGYEFIEIKVADIISRELQADSMSPSELDRT
                     LTEAISSIDVKDKIILIKLVGSLHGRRSDI"
BASE COUNT          840 a          448 c          568 g          702 t
ORIGIN      
        1 tctgttgatt atccagctac ctagaaaatc ctcaaatcca gaagttgatc gatttcaatt
       61 caagatgagg tggaaaatat atctggggtc aaaatatagt ctgttacaga acgtctgtag
      121 atacaagtat taatttggac agatataata cgccagatat gcggctgata atgaaattcg
      181 gaggaagagc agtcgactct ggcgaaaaag ttcttcatgt ggcgaatttg ataaagaact
      241 ataaaaatag aggtcgagaa attgttgcag tcttctcagc agttgacggc atgactgatg
      301 aaatattgcg agtctctgaa tccgtaaaaa aaggcaataa gacgacgatt gaggactttc
      361 tagttaagac aagagatgca cacgtaaaaa taattgaata ttcgataaag aacaaagacc
      421 tcaaatcaaa ggtgatggat attattgaaa aactgctttc agagatggca gatcttttta
      481 acggtatagt aatactatca gaggtaacgc ctaaagctct tgattattta ctttcattcg
      541 gtgaaagact tctggcaccc ataatggtat tcacgttact ggatttaggt atagaagcag
      601 ttttcttgac cggtaaggaa gcaggtattc ttactgattc gaattttgga gaggccaggc
      661 cacttatgga tacaactaaa cttcgattaa agcacaatat tgaacctatc ttacagagca
      721 acaaaattcc ggtaataaca ggcttcatcg gagcagatca aaatggaaat gtcacaacat
      781 tgggtagggg cggctcagat tatacagcta caatcattgg ggccagcgta gatgctgatg
      841 aggtctattt atggggtgac gttgatggcc tcttgacggc agacccaaaa atagtaaaga
      901 actcaagagt attgaaagaa gtctctttcg cagaggcgac cgagctctcc ttatttggag
      961 ccaaatatat gcatccaaga gcgctcgagc ctgtgttaga caccaagatt cccatccaca
     1021 taaggaatac ctttaattta gatcataaag gcacgattat ttcgaaaaag acgagtagat
     1081 ctgctcaaaa gatagtaaag tcaataatag ccattcgtca cactgcttta atagatgtaa
     1141 gtggaggtgt tatggtcggt acgcccggga cagctgcaag gatttttgac gccctggcaa
     1201 aaaagaaagt gaacataatg atgatatcac agagtccttc ggaatcgagt atttcgatgg
     1261 ttgtaaaaaa gaatgatcta gacaccgcca ctacaacatt ggatttgacg cttttaggta
     1321 cagtaatcag aaatctaaag gtaaatgatg atgttgcagt catagccgtt gtcggctctg
     1381 gcatgagagg aattaaagga gttgctgcga aagttttttc ctctgtcgct aaaaataata
     1441 ttaacgtgat aatgatcgct caaggttcct ccgaattaaa tttggcattc gttgtaaaca
     1501 acagtgattg tggaaacgcc gtcatatcac ttcatgactc atttgagcta gacaaaatag
     1561 actagtcgtt agctggattg actagacttg acttgaatgc ttaattaact accagctatg
     1621 aaatgaagct gcagcaggga tgaagtttgc acatatcacc gactgtcata taggagcgtg
     1681 gcgaaatcca aaactcaggg atttgaatct taaggcattt gaagaggcca taatgaattg
     1741 tatcgatgca gcagttgatt tcattgttat ctcaggagat ttctttgatg ccaatatccc
     1801 ccaactaggt ccggtaaaga aggctgttga actattaagg cttgccaaat cccacggaat
     1861 tcaaacctat atgatatatg gttcacacga ttttgcgatg accaacgtat cgatgattga
     1921 tattctgcat tctacggatc ttttcattaa accgacagaa tatgaaaaag atggtaatgt
     1981 cataaaactt caattcttta ccgacccaaa gactcatgca aagattacag gtatttcggg
     2041 tagaaagatg ggactggata aagagattta tgaaaacttg gatagggagg gacttgagtt
     2101 agaagacggg tttaagatcc tgcttcttca caaaggtatc agtgagctta ccaccgataa
     2161 ggcactggtt aaagattgca ttccccttag ttatcttcct cgaggttttg attattacgg
     2221 tggaggacac atacacaaga ggatggaagg aaatatgggc gaaagtaaaa tagtatatcc
     2281 tggtcccatt tttggttcta cttttgaaga tttagaacaa acggcaaagg gggagaggcg
     2341 tggattttat ataatcacct ttgacaagaa attaactgga tatgaattca tagaaatcaa
     2401 agtcgcagat attatttcaa gagagcttca agcagacagc atgtcacctt cggagctgga
     2461 ccgcaccctt acggaggcta tctcttcaat agatgttaaa gataaaataa tcttgatcaa
     2521 gcttgtaggc agcctccatg gtagacgctc tgatatag
//
LOCUS       DASSIK010000314         2720 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_558563, whole genome shotgun sequence.
ACCESSION   DASSIK010000314 DASSIK010000000
VERSION     DASSIK010000314.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2720)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2720)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2720
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_558563"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..235
                     /locus_tag="VFI64_05855"
     CDS             <1..235
                     /locus_tag="VFI64_05855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242848.1"
                     /translation="KLFVQFALRSRLRKDYDYVFGKSIYNFTEREKIKLASFPLDDNL
                     ILRISIVKEEKNHDQIIQKILESIQKLRLNQKK"
     gene            complement(688..960)
                     /locus_tag="VFI64_05860"
     CDS             complement(688..960)
                     /locus_tag="VFI64_05860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HET7242849.1"
                     /translation="MKYRSRTDITGLILEAANGGATKTKIMYKAYLSFAQLRDYLSML
                     IEKGLIEYEEGAARYRTTEKGLRMLQMCNKINDELAISPTQVRGLF"
     gene            1236..1409
                     /locus_tag="VFI64_05865"
     CDS             1236..1409
                     /locus_tag="VFI64_05865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242850.1"
                     /translation="MGNRAAGLGDLRPLRIGTRQLWAFWQMDYILGASTLMGGTNCGR
                     DDIDIQVVGIMKR"
     gene            1406..>2720
                     /locus_tag="VFI64_05870"
     CDS             1406..>2720
                     /locus_tag="VFI64_05870"
                     /inference="COORDINATES: protein motif:HMM:NF025055.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HET7242851.1"
                     /translation="MSNNTTIFRRLPSKIITKIGILVVIEIIIILSSFVILAYFESLG
                     TYLGNSINIAGKNRFLTANVQLATVEYQSGSSNLGDLSKAIDTLESNIRALKDGGSYL
                     GLELRPLPLQFLNYWNVINQNWDDYKKSIVDKIIKPMQTTAILPSAEELSTTKESKTK
                     ASALIGSSDALVTKLGEFAKINSQNLMLLQILLGILNIMILAVLSYLIVKMLEPISAL
                     TKATAEVKKGNLDVTVAHAGRDELSDLSQSFNSMVDSIKNYRRNQNELTDKLAKTNEE
                     LKRKEKLKDEFINVASHELKSPIQPILGLAGLALKGKIKHEEAWEVTLRQARKLEQLA
                     NDILDVSRIESGNLSCKMEKVRINEIILDVVAAAKLNPNLSEHVALNTKLDTSIEVVA
                     DKLRITQLLGNIIGNAAKFTTSGNITVETRVHLKENEIEIRIVDTG"
BASE COUNT          923 a          495 c          519 g          783 t
ORIGIN      
        1 aaaacttttt gtccagtttg cattgagaag tcggttgaga aaggactatg attacgtttt
       61 tggcaaatcg atctataatt ttacagaaag ggagaagatt aaacttgcat cgtttccttt
      121 ggatgacaat ctcatattga gaatatctat agtgaaagaa gaaaaaaacc atgaccaaat
      181 tattcaaaaa atactagaat ctattcaaaa gttacggttg aatcaaaaga aatagcagaa
      241 agataacact catcattctt actgatccac ttgacaccat gtggatatac atcagtagtc
      301 gttttctttc gtttaagcaa cagcacctaa atccaagaac acgattccaa tattattcct
      361 atcaaagctc cttaggacaa ggattatact tattgactgc aagttaaagt ggaaggtatg
      421 gttcagcagg aagtcaatgt cagttcgtgg gccaacaccg ccagtggaat cggttttgca
      481 aaaggctctc atctgattga tagccccttc aatacaaaaa ccatttatgg gtatctatat
      541 ggtaacgata gcgccaaaat taattcattc aacaaatgct caatctgact gaacgatacc
      601 aggtgtgtga aaatacaata atggaaggag aactagtatt gctgaacttt acttttaaat
      661 aattagcgga atttgtgaga ggctatccta aaaaagccct ctcacctgag tgggagaaat
      721 cgctaattcg tcatttattt tattgcacat ctgtagcatc ctcaatccct tttccgttgt
      781 cctatacctc gctgctcctt cttcatattc tattagtccc ttctcaatta gcatggacaa
      841 atagtctctc aattgagcga atgatagata cgccttgtac atgatctttg tttttgttgc
      901 tcccccgttt gccgcttcga gaatcaatcc cgttatatca gttctgctac gatatttcat
      961 tcgatagtta gtggctaaaa tagtatttaa tgatgacact cgtttcttct taaacttttg
     1021 accataatta tcaattaaag ttatggtaaa tcataatatc tcgattacag aggagaaata
     1081 ataccttaag atgaatacta ataaattttg ttgacatcaa gtaatatctt atcgtttcat
     1141 tccatatatg tgaataaaat atttttaatc gggggtgcta ctttcagctt caattttcgc
     1201 agtcgttatg ccaactgcaa tagaaggaac attagatggg aaatagagcc gcagggttag
     1261 gtgacctccg acccctccga atcgggactc gacagctgtg ggctttctgg caaatggact
     1321 atattctagg cgctagtact ttaatgggag gcactaactg tggacgagac gatattgata
     1381 tacaagtggt agggataatg aaaagatgag taataataca accattttta gaagattgcc
     1441 ttctaaaatc attacaaaga taggaatttt ggttgttatt gaaattatta tcatccttag
     1501 cagttttgtt atcctggcct acttcgaatc cctagggaca tatttaggaa attcaattaa
     1561 tattgcaggc aaaaaccgat tcctaactgc gaatgtccag ctagcaacag ttgaatatca
     1621 atcaggatcc tctaatctgg gggatctcag caaagcaatt gatacattgg aatctaatat
     1681 acgcgcattg aaagacggcg gttcatactt gggcttagaa ttaaggcccc ttccgctaca
     1741 gttcttaaac tattggaatg tgattaatca aaactgggat gattacaaaa aatctattgt
     1801 ggataaaata atcaaaccaa tgcaaacaac agcaatattg ccatcagcag aagagctgtc
     1861 aacaacaaag gaatcaaaaa ccaaggcctc ggcattgatt ggatcatcag atgctctggt
     1921 taccaaatta ggagaatttg caaaaattaa ttcccaaaac ctaatgctat tacaaatcct
     1981 acttggcatt ttgaacatta tgattcttgc agtattgtca tatctcatag taaaaatgct
     2041 cgaaccaata tcggcgttga caaaggcaac tgccgaagta aaaaagggaa atcttgatgt
     2101 gactgtagcg catgcaggca gggatgaact ctccgatcta agtcaatcgt tcaattctat
     2161 ggtagactca ataaagaact accgcagaaa tcagaatgag cttacagata agctcgcaaa
     2221 aacaaacgag gagcttaaac gaaaagaaaa attaaaggat gaattcatca acgtcgcctc
     2281 tcatgagctt aaaagcccaa ttcaaccaat tctgggtttg gctggtctcg cactaaaagg
     2341 taaaattaaa cacgaagagg cttgggaagt taccttgcga caggcacgta agcttgaaca
     2401 attggcaaat gatattcttg acgtgagtag gattgaaagt ggtaatcttt catgtaaaat
     2461 ggaaaaggtg agaataaacg aaataatact tgatgtggtt gccgccgcaa aactaaatcc
     2521 taacctgagt gaacatgtcg cactaaatac aaaattagat acatctatcg aagtagttgc
     2581 ggataaatta cgtatcactc agctattggg aaatataatt ggtaacgcgg ctaaatttac
     2641 gacgtcggga aatataaccg tagaaacccg tgtacatttg aaggaaaatg agatagaaat
     2701 tagaattgtt gataccggta
//
LOCUS       DASSIK010000315         2823 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_558990, whole genome shotgun sequence.
ACCESSION   DASSIK010000315 DASSIK010000000
VERSION     DASSIK010000315.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2823)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2823)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2823
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_558990"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..253)
                     /locus_tag="VFI64_05875"
     CDS             complement(<1..253)
                     /locus_tag="VFI64_05875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242852.1"
                     /translation="MADSFARDIVIHHLDLLFNIKSSDILTELHFIYSKKTGRIKSFG
                     SKDFSFGTLRSDGGIALTIEGAQALFKTIAFRENCVIPKH"
     gene            909..2330
                     /locus_tag="VFI64_05880"
     CDS             909..2330
                     /locus_tag="VFI64_05880"
                     /inference="COORDINATES: protein motif:HMM:NF020078.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(Ile)(2)-agmatinylcytidine synthase"
                     /protein_id="HET7242853.1"
                     /translation="MRKAAIQVPACETAEDLNILHLGFDNTDSIQGKCTTHLAFKIAD
                     YLLKKNEIKFVDFPLLIRLNPNIPWKTRGNGAVCLRIATRGSEHIIDYVKNFISVNSD
                     ISNGANPGFVAYEGITIPTSVRQFSRTALYNVLSLNDAEKIIENESIQCYKCGNGHGS
                     IGALAAMGCLLEGDHTFEAISYRTEDNLGTPRSLNEQLVLKMSAVTFPRTFNNIDAVH
                     KRILITPHGPDPVFCGIRGEDPTTVLKSLLSLQTTEILEGYMVFRTNQGTNMHLQNQL
                     VFSQVRPFMAGYVRGTVSKIPYVLQGGHVLFEISDIARDTYPVAVYEPTDLGRIAKQL
                     VIGDVVDIGFGVREEQKYHSRILNLEYLAVLRLNSIVHTQNPLCKVCRKRMKSEGKGK
                     GYQCKECKIKTIEKYNVTVKRDIVEGFYLSSNKSHRHLTKPLHRFGQENSYPYVPGIY
                     PFPNPNSFHRKGHLNDRTECRSF"
     gene            complement(2334..2453)
                     /locus_tag="VFI64_05885"
     tRNA            complement(join(2334..2354,2384..2418,2435..2453))
                     /locus_tag="VFI64_05885"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2400..2402),aa:Met,seq:cat)
     gene            complement(2532..2687)
                     /locus_tag="VFI64_05890"
     CDS             complement(2532..2687)
                     /locus_tag="VFI64_05890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242854.1"
                     /translation="MAKPLDYDAYWKSWLKVCIDGIIKERTEREQGSNQIYNSLDQEY
                     HMSGVNN"
BASE COUNT          853 a          534 c          566 g          870 t
ORIGIN      
        1 cgtgtttcgg aatgacgcag ttttctcgaa aagctatagt tttaaaaaga gcttgcgctc
       61 cttcgatggt cagggcaatg ccaccgtcag acctgagtgt accaaagcta aagtcttttg
      121 atccaaaact tttgattctc cctgtttttt ttgaataaat gaagtgaagc tcagtcaata
      181 tgtcagatga cttaatattg aataacaaat ccagatgatg aattacaata tctcttgcga
      241 acgaatcagc caatcttata gctggtgaag ttccggtgtt ttaaatatgt cgaaagtaac
      301 taatgtgaat atacctttta ccagcaattc tccaggcata gacgcatttc actagtttat
      361 tatgtactct tgtgatggct tatgcgttga gtttccaaac aatcgttgtt cttctaccat
      421 atttaataac tcacgtagcc tttagtaaca aacaattgat tattatgatt aaatttttac
      481 ccagaaattt ctctccaaat aggcatctta catactaaga gaccattctc tttcacctga
      541 ttagcttggt aaatttcctt tcccataatt atcgaacatt ttcccaaaac taattttcgc
      601 gacgtcgaat cgctgtacat cacaaggtag tatctccttt atggatgagt gcagtataat
      661 taataacgga gataagatga ttgacaccat tccactttga ggtatcattt gtagtgatga
      721 atacctcatc agtatatttt gaagagaaaa ataataatgt gggcctattt tctttagccc
      781 ttttaatcca tacacactat ccaagaagat ctgatttgaa gctaaatcgt gagttggtat
      841 tgtcaaatga tggttgtaga gtacatcgaa ttgacgttta aatggggacg tacaggatat
      901 cattcacctt gagaaaagct gccattcaag tgccagcttg tgaaacagct gaagatctaa
      961 atattttgca cctcggattt gataatactg attctattca aggaaaatgt acgacgcact
     1021 tggcctttaa aatagctgat tacttgctta agaaaaatga aataaagttt gttgattttc
     1081 ctctattaat tagacttaat cctaatattc cgtggaagac tagggggaat ggggctgtat
     1141 gtttacggat cgcaactaga ggaagcgaac acattataga ttacgtcaaa aacttcattt
     1201 ctgtaaattc ggacattagc aacggtgcta accctggttt cgtcgcatat gaaggaatta
     1261 ctattcctac tagtgtgaga cagtttagtc gaaccgctct atacaacgta ttaagtttga
     1321 atgacgcaga gaaaataatt gaaaatgagt ctattcaatg ttataaatgt ggaaatggtc
     1381 acggatccat tggggccctc gctgccatgg gctgtctatt ggaaggagac catacgtttg
     1441 aagcaatctc ctacagaacc gaagataact taggaactcc aaggtcgcta aacgaacaat
     1501 tagtgcttaa aatgagcgct gtaaccttcc cacgtacttt caacaatatt gatgcagtac
     1561 ataaacggat tttgattacc cctcacggtc ccgatcctgt gttctgtgga attaggggtg
     1621 aagatcctac cacagttctg aagtcattac tctccttaca aaccactgag atattggagg
     1681 gttacatggt tttcagaaca aatcagggca ctaatatgca cttgcaaaat caattggttt
     1741 tttctcaagt gaggcccttc atggcagggt acgttcgagg tacagtaagc aagattccgt
     1801 atgtacttca aggaggccat gttttatttg agatctctga tattgctaga gatacatatc
     1861 ctgttgcagt atatgagccc actgatcttg gaagaattgc aaaacaactt gtaattggag
     1921 atgttgttga tattggattt ggggttaggg aagagcagaa ataccattca aggattttaa
     1981 acctagagta cttggcggtt ctaagactga attcaattgt ccatactcag aatcctttat
     2041 gcaaagtatg tagaaaacgt atgaaatccg agggcaaggg taagggatac cagtgcaagg
     2101 agtgcaaaat taaaaccatc gagaagtata atgttactgt gaaacgtgac atagttgaag
     2161 gattctactt atccagcaat aaatcacatc gtcacttgac aaaacccttg cataggtttg
     2221 gacaagaaaa ttcatatcca tacgtgccag gaatatatcc atttcctaac ccgaactcct
     2281 ttcatcggaa aggacatctt aatgatcgga ctgaatgccg gagcttttaa agatagcggg
     2341 gggttgattt gaacctgcgg ccactgagga atactgaagt ggaaaccgct ctgcgggtta
     2401 tgagcccgcc gggataactt tgcctcacca agatctggct tccccacccc gctgttaaga
     2461 aggtccaaag aagggaaata tatctctgtc tctatcgggt caaatcagag aagtactgca
     2521 ggaacaattc tttagttatt tacaccagac atatggtatt cttggtcaag cgagttgtat
     2581 atctgattgg atccctgctc tctttcggtg cgttctttta ttatgccgtc aatacaaacc
     2641 ttgagccaac ttttccagta ggcatcataa tccaatggtt tagccatgtc agtcgattga
     2701 atgtttattt atattacacg attatgttat gtttttcggt ccgcgtagat tcaatcgaat
     2761 ttaaattatc cccgtattag gtctgacttg atggagttta ctgtctcgtt aattacttgc
     2821 aat
//
LOCUS       DASSIK010000316         2114 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_864023, whole genome shotgun sequence.
ACCESSION   DASSIK010000316 DASSIK010000000
VERSION     DASSIK010000316.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2114)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2114)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2114
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_864023"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..356
                     /locus_tag="VFI64_05895"
     CDS             <1..356
                     /locus_tag="VFI64_05895"
                     /inference="COORDINATES: protein motif:HMM:NF015835.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HET7242855.1"
                     /translation="AVVCRKDNKGLISLLKKIEHQPSRISIEAERTLMTDIHAGCRFP
                     VGALATYDTENRTVRLRVKAFSADGKKSLKLEKIGSANQAKTIGKEMARSLIRNGIED
                     MADGWREALDSWNNL"
     gene            353..1105
                     /gene="cobA"
                     /locus_tag="VFI64_05900"
     CDS             353..1105
                     /gene="cobA"
                     /locus_tag="VFI64_05900"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004851 - uroporphyrin-III
                     C-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0019354 - siroheme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HET7242856.1"
                     /translation="MKSKGKVFICGAGPGDPELLTVKATRLLQTCDIILHDRLVSREI
                     LELASQTSKKIYVGRASGDPKGTQKKTNNLMLNFANEGKKILRLKGGDPFIFGRGGEE
                     AEFLASHHVEYEIIPGISSFAGAAGYAGIPLTHRRYSSSLAVVTGHVDADKNGVVNWS
                     QLARSVDTIVVLMGLERVSIIAKKLIRGGLDTNTEVAVVENATTTKQRIIISKLGEVA
                     TKVKKYSVRPPSVIIIGKVVRVRMQIKDLSLN"
     gene            1587..>2114
                     /locus_tag="VFI64_05905"
     CDS             1587..>2114
                     /locus_tag="VFI64_05905"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: protein motif:HMM:NF014641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006780 - uroporphyrinogen III biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006782 - protoporphyrinogen IX
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HET7242857.1"
                     /translation="MALENKVFAITRNTNRNAEFIRLVKDSGGIPLSLSAIKLVPKSP
                     KSIFRLVNKITERNYEYYIFMSSSAVAVLLSLAEKINKKDEILTELRNKKIIALGPSV
                     KNYLELQGIRTYLMPNKFSSMDLSEHIKRLDLPRGTRILIPRSAAANSFMKDSLSSMG
                     LLADDFFLYRPQTADL"
BASE COUNT          679 a          372 c          479 g          584 t
ORIGIN      
        1 tggcagtggt atgcagaaaa gataacaagg ggcttatctc tctactaaaa aaaatcgaac
       61 atcagccttc acggatatct attgaggcag aacgtactct gatgacggat atccatgctg
      121 gttgtagatt ccccgtgggt gcgctagcca cttatgatac tgaaaatagg accgttagac
      181 ttcgtgttaa ggcattttct gctgatggaa aaaaatcact gaagctggaa aaaattggtt
      241 cagcgaatca ggcaaaaaca attggtaaag aaatggcgcg gtcgctaatt cgaaatggga
      301 ttgaagatat ggcggatggt tggagagagg cgctagattc atggaacaat ctatgaaatc
      361 aaaagggaaa gtcttcatat gtggtgccgg cccaggcgac cccgaacttt taaccgtgaa
      421 ggccactaga cttcttcaaa catgcgatat aattcttcat gatcggctag taagtcgaga
      481 aattcttgaa cttgcttcac agacgtcaaa gaaaatttat gtaggcagag catcaggaga
      541 tccaaaggga acacaaaaaa agacaaataa tcttatgctt aattttgcta atgaggggaa
      601 aaaaatactc cggctgaagg gtggcgaccc ttttatattt ggaaggggtg gcgaagaagc
      661 agagttctta gcttcacatc atgtagaata tgagataatt cctggtattt catcttttgc
      721 cggcgcagcc ggttatgcag gcataccatt aacacacaga agatattcat cgtcgttagc
      781 agtcgtgacg ggacatgtag atgcagataa aaatggagtt gttaattgga gccaactcgc
      841 aaggtcagtt gataccattg tcgtattgat gggactagaa agggtaagta ttattgccaa
      901 gaagttgatc cggggtggct tggatacaaa cacagaagtt gctgttgttg aaaatgccac
      961 cacaactaag cagagaatca tcattagcaa gttaggggag gtcgcaacaa aggtgaagaa
     1021 atattcggtg cggcctcctt ccgtaataat aatcgggaaa gtggtgagag tgcgcatgca
     1081 gattaaggat ctatctttga attgaaatta gaatgtcttt taaatgaaaa agtacttgaa
     1141 aaaacagcca gtcatgattc ttagttctct ggaacattcg ctaactcgta acgggacatt
     1201 cgtgcgttgt taggcctcaa cgggattctc catgaaacta ctttgcttaa gcgttttcca
     1261 tgttcttcat caaacattag acactattaa taaattccac tatccttacg tttggatgct
     1321 atggaaacca tggacaccac aaattcctac cgttatcagt ccgtgctata ttatatgatg
     1381 cttgaatatt tttatgtgct tgacaatttc acaagcgttt gtaattgcaa catcaattca
     1441 gagagtaata aacgatgctt tgccgaaagt ttgtgtgtga taatggaact tggaatgaca
     1501 tgtaaggaag tagaaaattc aaaactagca taaatccatt catagtacct ggtggtttat
     1561 tagatacaaa gggatattgc tgattcgtgg cattagaaaa taaggtcttc gcaattacaa
     1621 gaaacacaaa tcgtaatgcc gagttcatac gtttggtaaa ggattctggg gggatcccat
     1681 tatctctttc tgcaatcaag ctggtgccaa agagtcctaa gagtatattc aggctagtga
     1741 acaagataac cgaaagaaat tatgaatatt atatctttat gagctccagc gcggtagccg
     1801 ttttattatc tcttgcggag aagataaaca aaaaggatga aatactgaca gaattacgaa
     1861 ataagaaaat aatagcgcta gggcccagcg ttaagaacta tttagagctg cagggtattc
     1921 gaacatactt gatgccgaat aaattttctt ccatggattt atcagaacat atcaagagat
     1981 tggatctccc tagagggacc aggatactta ttcctaggag tgctgctgct aattcattta
     2041 tgaaagattc gctgtctagc atggggcttt tagcagatga tttctttcta tatcgtccac
     2101 aaacagctga ctta
//
LOCUS       DASSIK010000317         2055 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_355339, whole genome shotgun sequence.
ACCESSION   DASSIK010000317 DASSIK010000000
VERSION     DASSIK010000317.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2055)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2055)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2055
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_355339"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            280..525
                     /locus_tag="VFI64_05910"
     CDS             280..525
                     /locus_tag="VFI64_05910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242858.1"
                     /translation="MGTGPSSKNGILENLGISYSVWVERCDKERMKQILTDPAEFGNL
                     LLEEVEAALLTGLYTRRPLDQGGSRISFHLPNKESID"
     gene            1220..1450
                     /locus_tag="VFI64_05915"
     CDS             1220..1450
                     /locus_tag="VFI64_05915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242859.1"
                     /translation="MARGKFVGYTIGAILIAFGVIALYQIFTATTTGWQNVSYPAIGI
                     VMLIIGACVCYGVYTPDESKNPILDTDSPSVK"
BASE COUNT          635 a          413 c          448 g          559 t
ORIGIN      
        1 aaccttaaag atcaaaaaaa gccaaaaatt ccttattttt tattttctaa attcaaacgc
       61 actggggtct tgaagaagta gatacacttt ttgcaaatta ggtgtaatgc atgatgagtg
      121 ttggacgaac gaatttcttg aggcctcaaa atgtggggcg agcgtaggct aaagcggcgc
      181 gtggcaaatg gaacattacg ggaccgtaac cactgaaaga gattcaaggg atgcaaaata
      241 tcaaaaagtc attttagtgc ctgtcgagat agaattaccg tgggaactgg accaagtagc
      301 aaaaatggca tactcgaaaa tctaggaata tcttactcgg tatgggttga gcgctgcgat
      361 aaggaaagaa tgaaacagat actaacggat cctgcagagt ttgggaatct cttgttggag
      421 gaagtagagg cagcactgct tacaggactc tacaccagac gacctctaga ccaagggggg
      481 agtagaatca gtttccatct ccccaataaa gaatccatcg actgattcca actcatagtg
      541 cagaacagac ctcctattac aatgataaag gtcttcttca gcgacacgac tacgtcgccg
      601 aggttgctgg cgcagtcggg gcgcactact ctttcgacca cgcattgttc tcagggcttg
      661 tatttccgac gctccgtcgc gtagtcgggc tcacgccgac tggcccgctc atctcgggtc
      721 ccaccgccat cctgctgctg ttttccgata tcgtaacgtc aacaaactga cacttcctcc
      781 cgaaggtttg caatcatcat tcaaacctgc tactaatatc tagtatagta ccggctggag
      841 agggaggtgg aacgactaga actatgtaag tctatcgcaa ttgctttaag catcaatcca
      901 caactgaaat tgtttgattc taagtagggg cccatgctat gaatgtgatt catcatacga
      961 aattgtacct ccatcagatt tggaatattg tgttccaagg gaacaaccaa agaccagaga
     1021 ttatctctcg agaatttatg aatgtgatga aagccatcac aggaattcag tctattggga
     1081 gaagaaagat tatgctaccg tattcgattc atggcaatct acaagacatt acgaagacct
     1141 tgatgacaga agaaaaagac aagactccga tctagcacga cataccttgt cgtactaata
     1201 tcaaagtgaa ggaaggtaaa tggctagagg aaagtttgta ggttatacaa ttggagccat
     1261 cctaattgca ttcggggtta ttgctcttta ccaaattttc acagcaacta ctacaggctg
     1321 gcaaaatgtt tcctaccctg ctataggtat tgtaatgtta atcattggcg catgcgtttg
     1381 ttacggagtt tatactcctg atgaatctaa aaatcctata ctagacaccg actccccctc
     1441 agtaaagtaa tcccttcctt aaattcaaca atttataatt caccggtgtg ggtagaacgg
     1501 ttccttcatt tagatttgca gcagaaattg aacgaacgaa gtggaagcaa tttagatcct
     1561 atttggacaa gaaggacaga aagatgtttg atcagatgta cgactgtgtc aaattatata
     1621 atgtggtatg tatgacggcc tgcagacctg tcattgtcca tctgtgctta tgtcaattat
     1681 atttgaacac tacaagcaat tacatcaagt ggaaagtaaa tagaccggaa acagcgtgaa
     1741 caagtgacaa gtctcaatga ttggatcacc gaagtagacc taagggattg acaatttaat
     1801 ttcaaatgtt tgttacttat acttaacaaa ggtcggtaaa tatcagccag ttgtatgtac
     1861 gggtatgcaa gagcaagtgc gatgacgtgt tttgtatttg aatttaacgt tcttgcgcag
     1921 atcttctagt gctcttgcaa tcatccaaaa ataaagatta ttcaggttcg ggtcgttgag
     1981 taagacctat cacaccccct ttcagaaagt ttggacgctc tcagtcttgc ttgtaagatg
     2041 tataaaatga aatag
//
LOCUS       DASSIK010000318         2821 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1070317, whole genome shotgun sequence.
ACCESSION   DASSIK010000318 DASSIK010000000
VERSION     DASSIK010000318.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2821)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2821)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2821
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1070317"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..207
                     /locus_tag="VFI64_05920"
     CDS             <1..207
                     /locus_tag="VFI64_05920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphohydrolase"
                     /protein_id="HET7242860.1"
                     /translation="SDHLTDLSQFVHRLDKLEMAFQAKDYVLSGYSRGKLCEFIDSAH
                     RTIVGDKNDLISEILQGLNAATAN"
     gene            217..540
                     /locus_tag="VFI64_05925"
     CDS             217..540
                     /locus_tag="VFI64_05925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242861.1"
                     /translation="MQYFPALKMGEKRVKAAQEILNRYVGNAMPALALKDNKDNIWEP
                     VGEENLFAVVKEDQGYMIALCDKNGIAKSIAQWFAEDKKNEILKRFKEEEAMQEYFGK
                     LSLPV"
     gene            573..1817
                     /locus_tag="VFI64_05930"
     CDS             573..1817
                     /locus_tag="VFI64_05930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00300 family protein"
                     /protein_id="HET7242862.1"
                     /translation="MIELSEKKFERVLEVRGHLIDSMILTRIFDKIMDLKGDFNVLEF
                     KIGKRKNELSYARLMVHGKNKKHLDQLLATLYIEGAQPVVIEEVLIKPAPDNMVMPSD
                     FYSTTNNSTQIYYSNEWIDVRNMMMDKCIAIDIKLRTAECKMIREVRKGDMIVVGERG
                     VKVLPEERPRQGIDIFQFMSSSSSSERPTLQIARKIAMDIHLTKKAGGKIIVTAGPVV
                     VHSGAAESLAKMIRLGYVNGLLSGNALAVHDIENALMGTSLGMNVKDGTLAVRGHRNH
                     MLAINEVFKAGSIENMVRKRILKSGIMYECIVNKIPYVLCGSIRDDGPIPDVVADILE
                     AQRQYKEILKGANLVLMLSTMLHSIAVGNMLPAKVKVVALDISQPVVTKLLDRGTTQA
                     IGVVSDVGAFLPMVVQQLEKIN"
     gene            complement(1867..>2821)
                     /locus_tag="VFI64_05935"
     CDS             complement(1867..>2821)
                     /locus_tag="VFI64_05935"
                     /inference="COORDINATES: protein motif:HMM:NF014674.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     GatCAB subunit B"
                     /protein_id="HET7242863.1"
                     /translation="PDFTDPREVRYFLNKLSSILEHLGICDTTLEGAVRCDANVSLKG
                     GERIEIKNVNSFREVEKALTYEISRQTSLSTRNIRINSETRHWDEQRKITRIARTKEE
                     EQDYRYFPEPDIPLVMLGKDFYTYIEKLVPELPDERLSRFKSKYTLSDHVANILINSK
                     KLADFFESCLKIYYSPVEIANWLVNDLLALIGGEETMILDNLKIEPKHMAELAKLVDE
                     KKISRSTAKQIFTEVFRTGQAPSELLSRTDYSQINDESFIANAVDLVFSSEESAVEDA
                     KVNSGAINFLVGKVMKVTKGRADPKIVTQLINVKLAQLGNS"
BASE COUNT          908 a          514 c          587 g          812 t
ORIGIN      
        1 agcgaccatt tgaccgacct atcccaattc gttcaccggt tagacaaatt ggagatggct
       61 tttcaagcaa aagattatgt ccttagtggt tattcaagag ggaaattatg tgaatttatt
      121 gattcggcac atcgtacaat agttggtgac aaaaatgacc ttatttccga gattttgcaa
      181 ggtttaaatg ctgcaacagc caattgatac gagaatatgc aatactttcc tgcgctgaag
      241 atgggtgaga agagggtaaa agcggcacaa gagatactaa atagatatgt aggcaatgca
      301 atgccggcat tagctctaaa agataataaa gacaacatat gggaacctgt cggtgaagag
      361 aacttatttg cagtagtgaa ggaagatcag ggatacatga tagcactgtg cgataaaaat
      421 gggattgcaa aatcaattgc tcaatggttc gctgaggata aaaaaaatga aatattaaaa
      481 agattcaaag aggaggaggc gatgcaagaa tattttggaa aattgtctct tcccgtataa
      541 ttatcgcttg aatgtgattt aaatctaaat aagtgataga actgtcggaa aaaaagtttg
      601 aacgagtatt agaagtcagg ggccatttaa ttgactctat gatcctcaca agaatcttcg
      661 ataagatcat ggatcttaag ggtgatttca atgtacttga atttaaaata ggaaagagga
      721 agaacgagct cagttatgca cgtctaatgg ttcacggcaa gaataagaaa catcttgacc
      781 agttattagc aacgttatat atagaaggtg cacagcctgt tgtgatagag gaggtactca
      841 taaaaccagc cccagataat atggtaatgc ccagtgattt ttacagtaca acgaacaact
      901 caactcagat atattactca aatgaatgga tagatgtccg caatatgatg atggacaagt
      961 gcatcgcaat tgatatcaaa ttaaggactg ctgaatgtaa aatgataaga gaggtgcgaa
     1021 aaggcgacat gatagttgtc ggggaacgag gggtgaaagt tcttcccgaa gagcgtccca
     1081 ggcaaggcat agacatattt caattcatga gcagctctag ctccagtgaa cgaccaaccc
     1141 tccaaatagc gcgaaaaatc gctatggata tacatctcac taagaaggca ggaggaaaaa
     1201 taatagtaac tgctggaccc gtggttgttc actctggtgc cgcagaatca ttagcaaaga
     1261 tgattagatt gggatatgtt aatggtcttc tttcggggaa tgctctggca gtacatgata
     1321 ttgaaaacgc attgatgggt acatcgctag ggatgaatgt caaggatggt acattagctg
     1381 tccgaggtca taggaaccat atgctggcca taaacgaagt atttaaggca ggatccatcg
     1441 aaaatatggt aaggaaaagg atcttaaaat caggcataat gtatgaatgt attgtcaata
     1501 aaataccata tgtcttatgc ggatccatta gggatgacgg acctattcca gatgtggtgg
     1561 cggatatttt agaagcgcag aggcaataca aagagatctt gaaaggcgca aatctggttt
     1621 tgatgttatc aaccatgcta cattctattg ctgtcggaaa catgctgcca gctaaagtta
     1681 aagtcgtagc attagatatt agtcaacccg tggtaactaa gctacttgat agaggaacaa
     1741 ctcaggcaat aggggtagtg tctgatgttg gtgcatttct tccaatggtc gttcagcagt
     1801 tagaaaaaat aaattaaaga cacagatatc atggatagac tagccgagta tttgaaaaac
     1861 taaaccttag ctgttaccca attgagctaa ctttacgttt attaattgag tcactatttt
     1921 tggatccgct ctccctttag tcactttcat aacttttcca accagaaaat taatcgcacc
     1981 ggaatttacc ttcgcatcct caactgcaga ttcttctgaa ctaaatacaa gatctacagc
     2041 atttgcaatg aagctttcat cgtttatctg ggaataatca gtcctactta gcaattcaga
     2101 gggtgcctga ccagttctga acacttccgt aaatatctgt ttagcagtgg atctgctaat
     2161 tttcttttca tccacaagtt ttgccaactc tgccatatgt ttcggttcaa tcttcaaatt
     2221 atccaagatc attgtctcct cacctccaat caaggccaaa aggtcgttaa ccaaccaatt
     2281 agcaatttct acaggtgaat aataaatctt caaacatgat tcaaaaaaat ctgctagctt
     2341 ctttgaattg ataagaatgt ttgccacgtg atcagaaaga gtgtattttg atttaaaacg
     2401 cgagagtctc tcatctggta attctggtac aagcttctct atataagtat agaagtcctt
     2461 tcctagcatc accagtggta tgtcaggttc gggaaagtat cgataatcct gttcttcttc
     2521 ttttgttcgg gctattcgag tgatctttct ttgctcatcc caatgtcgag tttcggaatt
     2581 gatcctgata ttgcgagttg ataagcttgt ctgcctagat atttcataag tcagagcctt
     2641 ttcaacctcc ctgaaagaat ttacattctt tatttctatt ctttctcccc ctttcaatga
     2701 aacattggca tcgcacctga cagcaccttc caatgttgta tcgcagattc caagatgttc
     2761 caatattgaa gatagtttat tcaaaaagta cctaacttcc ctaggatctg taaaatccgg
     2821 c
//
LOCUS       DASSIK010000319         2621 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1070714, whole genome shotgun sequence.
ACCESSION   DASSIK010000319 DASSIK010000000
VERSION     DASSIK010000319.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2621)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2621)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2621
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1070714"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            186..854
                     /locus_tag="VFI64_05940"
     CDS             186..854
                     /locus_tag="VFI64_05940"
                     /inference="COORDINATES: protein motif:HMM:NF025580.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4328 domain-containing protein"
                     /protein_id="HET7242864.1"
                     /translation="MSLVTGYSSLSRLTKWLVMIFVIESMVSLVVFVSDAYEIRLLES
                     IMNYDYDYYTTLSLAEINDTRQSIISTISFSVTIFSSVVFYYWFYRAYRNLPALGGRG
                     LEFTAKWVIAYFFIPILALWKPLKALEEIWKWSDTDPSHSAKSSIILLAWWIPSIIAN
                     MLGFLIFRGYLRVETYEQLINIDTQDMALQILIMVSNALFIYIAKEICGRQEMKSRNI
                     TTVS"
     gene            1214..1681
                     /locus_tag="VFI64_05945"
     CDS             1214..1681
                     /locus_tag="VFI64_05945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242865.1"
                     /translation="MVDTRIRITALVSAIALLSIILSHANTAQANLPPALITKIQKPE
                     LHLYLSSPVPVANVVVTATFQGTSLYKVVSLDGINDILVPFSFSPMQKSVVDRFDACV
                     YNPRTAETNCSEPVVLWNQLGPSSLRLQVLNTVGSASPTAVNAISGNDTQILS"
     gene            1803..2279
                     /locus_tag="VFI64_05950"
     CDS             1803..2279
                     /locus_tag="VFI64_05950"
                     /inference="COORDINATES: protein motif:HMM:NF012774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HET7242866.1"
                     /translation="MVLRLCLTILVLTGFVFNFPILLEAATLCKGAAVCFSGNVTKVV
                     DGDTLDVNGIRIRLSLINTPEVGMKNYTEAKDLALNLCPVGSMALVDQDDGQTRGSYG
                     RMIGEVYCNFKAGVENLTLTKKLSEEELKSGLAEILTKYCASSEFAGELWAKKYGC"
     gene            complement(2388..>2621)
                     /locus_tag="VFI64_05955"
     CDS             complement(2388..>2621)
                     /locus_tag="VFI64_05955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="quinoprotein glucose dehydrogenase"
                     /protein_id="HET7242867.1"
                     /translation="DANTGTIYCFILNTNRNALQLEGELKDRIADNLNELKKVKFATG
                     FGRITDIKLGQDGLLYVLSTQNGETSIYKIIPG"
BASE COUNT          816 a          454 c          518 g          833 t
ORIGIN      
        1 agttaatcat tccatctttt tttggcatac cctcgatatt atatccgagt aatttaccat
       61 tcatatgact tgctttttat ttttcacaat cgctgcttac aaactatttt cttatccaac
      121 aaccaataat atctgatgaa aagacatagc ttttcagaaa tatcggctga ggtgctgatt
      181 gagagttgag tttggttacg gggtactctt ctcttagcag actgaccaaa tggctggtaa
      241 tgatttttgt tatcgaaagt atggtgtcac tggttgtctt tgtatcagat gcctatgaaa
      301 ttcgccttct agaatcaatc atgaattacg actatgacta ttatactacg ctcagtctag
      361 ctgaaataaa tgacacacgg caatcaataa tttcaacaat tagtttttct gttaccatat
      421 tcagctccgt tgtattctac tactggtttt atagagctta taggaatttg ccggctcttg
      481 gaggcagagg actggaattt acagccaaat gggttattgc atacttcttt attcctattc
      541 ttgctctctg gaaaccactt aaggctctcg aagaaatttg gaagtggagt gacaccgatc
      601 cttcgcatag cgcaaaatca tcaatcattt tactagcctg gtggattcct tctatcatag
      661 ctaatatgtt aggattttta atattcaggg gctatttaag agtggaaaca tatgaacaat
      721 tgataaatat agatacccaa gatatggcac ttcagattct catcatggtc tcaaatgcat
      781 tattcatata tattgcaaag gaaatctgcg gaagacaaga aatgaaaagt cggaatatca
      841 caactgtatc gtaatacatt acattaatgg gtaacattgc acatatatca tttgtattct
      901 aatctgagta agaacaaaat gtatgttctg acggcaattt attcaatttg tagtaaagat
      961 agaccgtagg gaatgttttt ccaactttta gatcagaaac acagaattgt tgcgttaatg
     1021 ctcaagttca aaagacagtt tccattcatt tctggtacgg ctttgaggaa tgagaattat
     1081 atttccctag attcgtagct atctaaagat attacataat ttaggggaat tacatatagc
     1141 tatgtctaat tgatggaatt caggtataat gtgaccacag aaactttata acatttattt
     1201 ataacgttac catatggttg atacaagaat cagaataact gctcttgtga gtgcaattgc
     1261 attattgagt ataattttaa gtcatgcgaa taccgctcaa gcaaatcttc caccagcttt
     1321 aattacaaag attcagaaac cagaattgca cctttacttg tcttcgccgg tcccggttgc
     1381 aaatgttgtg gtgactgcca ctttccaagg tacgagttta tataaagtgg tctctctcga
     1441 tggtataaac gacatacttg tgcctttttc atttagtccg atgcaaaaaa gtgtggttga
     1501 caggtttgac gcatgtgtgt acaatcctag gacagctgag acaaattgta gtgagccagt
     1561 agttttgtgg aatcaactag gaccttcaag cttacgactt caagtattga atacagtggg
     1621 tagtgcatca ccgacagctg taaatgcaat atcaggaaat gatactcaga tattatcatg
     1681 atggctaagt ggagaatatg gcatatcaat tggactagat tcaaaaaccg gtgacaagac
     1741 caagccgaag tagagtaata gctttaaaaa tggcaaaaat tctaatcgat tagagcaata
     1801 ctttggtcct acgattatgt ctcacgatcc tagtattaac tggatttgtt ttcaattttc
     1861 ccattttgct ggaggccgca acactctgta aaggtgctgc cgtatgtttt tcgggcaatg
     1921 taaccaaagt cgttgacggg gatacattag atgttaacgg aattcgaatt agattgagtc
     1981 tgataaacac accagaagta ggaatgaaga attacactga agcgaaagac ctagccctga
     2041 atttgtgtcc ggtaggaagt atggctttgg tagatcaaga tgatggccaa acaaggggga
     2101 gttatggaag gatgatcggt gaagtttact gtaactttaa agctggagtt gaaaacctca
     2161 ctctgacaaa gaagctcagt gaggaagaac taaagagtgg gttagcagaa atacttacca
     2221 agtattgtgc tagtagcgag ttcgcagggg aattatgggc aaagaaatat gggtgctaag
     2281 tccacaatgt tttagcaagc gtgttaacga ggtttgctgc tattagaaat aataatcaaa
     2341 taaattttag gaacgcggca atcgtagatc gaccaatatt ggaaatacta gcctggaatt
     2401 attttgtaga tacttgtctc accattttga gttgaaagca catacagaag cccgtcctgc
     2461 cctaacttta tatcagtaat tctaccaaaa ccggttgcga attttacttt ctttaactca
     2521 ttcaaattgt ctgctattct atctttcagt tctccttcta attggagcgc atttctattt
     2581 gtgttcaata taaaacaata aatggttcct gtatttgcat c
//
LOCUS       DASSIK010000320         2657 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_769931, whole genome shotgun sequence.
ACCESSION   DASSIK010000320 DASSIK010000000
VERSION     DASSIK010000320.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2657)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2657)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2657
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_769931"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            397..552
                     /locus_tag="VFI64_05960"
     CDS             397..552
                     /locus_tag="VFI64_05960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242868.1"
                     /translation="MQLLGQRRHIAFVDQILTLKVFKELSGAREAFEINVDYTRGIRG
                     GTASHKH"
     gene            623..976
                     /locus_tag="VFI64_05965"
     CDS             623..976
                     /locus_tag="VFI64_05965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242869.1"
                     /translation="MDYAKLCREISDLDPKIRFAGVCDDTGEIKYGGQRDGVNNILSS
                     EETKKSNLQALARWGLRNSLSPKTGRGRYAMAEYEKIKRITIPLRNDHLLLVTTEVEA
                     NHTRIIENILKLVNG"
     gene            993..1226
                     /locus_tag="VFI64_05970"
     CDS             993..1226
                     /locus_tag="VFI64_05970"
                     /inference="COORDINATES: protein motif:HMM:NF013224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HET7242870.1"
                     /translation="MQTAYVLISCDPEDIEGIITMLNTISNISEANRVEGPYDILVKI
                     NAESPEKLKEIISIQLRKIDRIKHTLTLTAIQN"
     gene            1827..2186
                     /locus_tag="VFI64_05975"
     CDS             1827..2186
                     /locus_tag="VFI64_05975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242871.1"
                     /translation="MNYQNIHAHIMNLDQKIRLVTICDSNGKIMFSDHRPGVINLLSP
                     EESKKSLEMAVNAWKTRTELAGKIGKGKYVLAEYEKIKRITMPLGNDHLLYITAEVEA
                     DHSKVLDGVKRLESELK"
BASE COUNT          871 a          475 c          515 g          796 t
ORIGIN      
        1 cgtgtccgat tgtcgcccat tgttctcgaa tacgaaaggg tagattcttc tctaccctcg
       61 cctcacagat cccgcttcca ctattgattg aaagaataac ttcgtcttgt gagagtatgt
      121 cggaaatcaa cttctctgcc atggcgttcc tcattcgctt ttttctttgg ttgaagtcgg
      181 taataaaaca attgtactcg agttctaagt cttttgagga agttcattta tttagcatcc
      241 actgaaagtt gttgtcagtt ttctactctt gtaccatttc tttttcaagt tccacaagac
      301 ctaatctcat ggcggggcca taatggttgg atattcaata aacctagaac agatcagaat
      361 caaacaggga caatcttttg cagtaagata gaaatcgtgc agctattggg gcaacgacga
      421 cacattgctt ttgttgatca gatactgaca ttgaaagtct tcaaggaatt atccggggct
      481 agagaggctt ttgaaattaa tgttgactac accagaggta ttagaggagg aacagcttct
      541 cataaacatt agtataggaa agtgaaacct acaaattcac aaatagataa atcttttagt
      601 aataggaaat tacaaaatag atatggatta tgccaagttg tgcagggaga tctctgactt
      661 agatccaaag attcgatttg ctggtgtatg tgatgacact ggcgaaataa agtatggagg
      721 ccagcgagat ggtgtaaata atatactttc atctgaagag acaaaaaaat caaaccttca
      781 ggcattggcc agatggggct tacgtaattc tttatctcct aagacaggca gaggaagata
      841 tgccatggcc gaatatgaga agataaaacg tataacaatt ccactaagaa atgatcacct
      901 cttactcgtc acaacggaag tcgaagcaaa tcacacaagg attatagaga atatcctgaa
      961 attggtaaac ggataatact cggataaaag tcatgcagac tgcctacgtt ctaattagct
     1021 gtgatccgga agatatcgaa ggaataatta ctatgctcaa tactatttct aatatttcgg
     1081 aggcaaacag ggttgaaggt ccttatgata ttctagttaa aataaacgct gaaagtcctg
     1141 aaaagctaaa agaaatcata tcaattcaat tgcgaaagat agataggatc aagcacacac
     1201 ttacgttgac ggcaattcag aattagtcgt cttgaatgcg tatatttaat acttgaaaaa
     1261 agccatagtc agacccatag gctgcttgat ccacttttct actgctcctt attttaggat
     1321 agtatttcat gttatgataa aatttaattg atcttgttcg taggttcgaa cgaatctaac
     1381 ctcatcgtaa tatacaggat cagtagaacg tatgccattg ttactttcca agcaatattg
     1441 agttaccaac tattttcgga aaactcttta ccattgcacc acctgcaata ttagggttcc
     1501 acctaacata tcattactac ctacaggtat taatcctcct gttgctgtcg agaggataaa
     1561 gaagtatcat aagtaaatac ccgggacaga ttttgttttt attttgtatt ttgtatagtg
     1621 ttttgtactc tagctcaatc tatgtgaaga cagcgggtat gacacagaaa gacacgtcct
     1681 atgatcgcac aaatatctcc cggtttttat ggtgtgcctt gagccattat tttggaagat
     1741 ttgtggtaaa tcttgacaat gtaacggcat aacatgtgaa ataatagata tgaaaacttt
     1801 attacattca aaatgcagta tattttatga attatcaaaa cattcatgct catatcatga
     1861 atcttgacca gaaaattaga ctggtcacaa tttgcgattc gaatggaaaa attatgttct
     1921 cagatcatag acctggagta atcaacttgc taagtccaga agaaagtaaa aagtcccttg
     1981 agatggcagt taacgcatgg aagacgcgta cggagcttgc aggcaagata ggaaagggca
     2041 agtatgttct ggcagaatat gaaaaaataa aaagaattac aatgcccttg ggaaatgatc
     2101 atctcctgta cattacagct gaagtagaag cggaccattc caaagtactt gatggcgtta
     2161 agagactgga atcagaattg aaatgaaccc cgagcagagc tagcacagtt ccttccaatt
     2221 ttttattcca cggatgaaca tcaaagaaaa gttaatggaa tagaactatg gttttctagg
     2281 agggtagctt tattcaaaaa gccgtttgat atttctagca attcctcgcg acttgataga
     2341 tatagtattg cgtagccctg ttatcactat gttaccacta gagagaaggg gaaaaaatgc
     2401 aggtcagggt actatccata ggatctgatt gtatgcgtta tactaaaaaa tgaatttgga
     2461 ttccaaggtc aatttgcttc atcaaaaaga aattcttatt gagtgattca agggatccgt
     2521 atttgagaat tttaccattc ttctttaatg acttattcaa caaggagcct acttgatatg
     2581 tccttcacta ccacagattt aatgtttaca aattccttga taccaaattc tgataactct
     2641 ctccctattc cagaatt
//
LOCUS       DASSIK010000321         2543 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_961635, whole genome shotgun sequence.
ACCESSION   DASSIK010000321 DASSIK010000000
VERSION     DASSIK010000321.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2543
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_961635"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..445
                     /locus_tag="VFI64_05980"
     CDS             <1..445
                     /locus_tag="VFI64_05980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HET7242872.1"
                     /translation="GKISSSIEEVGLIGYNKKRIGELSGGQLQRVLIAKSLVADPDLL
                     ILDEPTTAIDMESENKFYSLLTELNKEKRMTIIWSSHDLDAIKKLANKVACINKRLFF
                     HGDVGEFFNNEKLMMSAYLESSMQAHMHSHFDVNNNDKIVDPDGL"
     gene            399..1289
                     /locus_tag="VFI64_05985"
     CDS             399..1289
                     /locus_tag="VFI64_05985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HET7242873.1"
                     /translation="MTSITMTRLLILMVFEILTFGFMQRALIAGIMIAIICSIIGLFL
                     VLKRHSLFGDAMSHVAFGGIAIGLFTNVYPLWTAFIVSVLAALGMTKLREFAKIPADS
                     AVAVLLSSGLAIGIVLISLSGGFTLDLFSFLFGSILLVSVQDLLMILIVSSIVLAIIS
                     LIYKGLTYVTFDEEQAAVGGLSVKNINYLFIVIASVTVIASIRLVGVLLISSLIVLPN
                     ITAITMGKGFKKTAIISCGISACSVIVGIIVSYIMNIAPSGAIVLTATAIFLTAVLGK
                     HIVRKIRRSDINIQDVTMSD"
     gene            complement(1366..1992)
                     /gene="hsp20"
                     /locus_tag="VFI64_05990"
     CDS             complement(1366..1992)
                     /gene="hsp20"
                     /locus_tag="VFI64_05990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaeal heat shock protein Hsp20"
                     /protein_id="HET7242874.1"
                     /translation="MSIDPFDWFAKFFGSGSTPFTRRNNANNFGDMFSGFDEMRREMQ
                     KVFEDIETKAPKDLIKEYETPEGKVREVGPIVYGYSMTIGPDGKPRVREFGNVKSPMR
                     SGGASFNTPVITSEREPMSDITTTDKEVKVVIEMPGVTKEKIKINAYDNKVEVTADDA
                     KRKYHEVIEIPPETDIETAKSNYNNGILEITFQKKVQTQPKGKEIQIE"
     gene            2200..>2543
                     /locus_tag="VFI64_05995"
     CDS             2200..>2543
                     /locus_tag="VFI64_05995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242875.1"
                     /translation="MTAGKYFNRAVMALDAPHVGFVVRETPDKIVVFGEKNERYDIPI
                     SEIQHVSKNVLIGLNFSDIAKKYKVDRDAPLPTSKYVDPWGSDGTVDLTEYMKRYGKT
                     LFNKGVRIENED"
BASE COUNT          734 a          459 c          491 g          859 t
ORIGIN      
        1 aggcaaaata tcatcttcaa tagaagaagt tggattaata ggatataata agaagagaat
       61 tggtgagctt tcagggggtc aattacaacg tgtgttgatt gccaaatcat tggtggctga
      121 tcctgatttg ttgatacttg atgagcctac caccgccatt gatatggaat cggaaaataa
      181 gttttattcc ctattaacag agttgaataa ggaaaaaaga atgactatca tatggtcctc
      241 tcacgatcta gatgcaataa aaaaattagc gaataaggta gcgtgcatta acaaaaggct
      301 attcttccat ggtgacgttg gagaattctt caacaacgaa aaattaatga tgtcagccta
      361 tttagaatca agtatgcagg cacatatgca ctcgcatttt gacgtcaata acaatgacaa
      421 gattgttgat cctgatggtc tttgaaattc ttacgtttgg ttttatgcag cgcgccctaa
      481 ttgctggcat catgattgca ataatttgtt caattattgg tttgtttttg gtgctgaaac
      541 gtcattcatt atttggcgat gcgatgtcgc atgtagcctt tgggggtatt gcaatcggat
      601 tattcacaaa tgtgtatccg ttatggactg cttttattgt ctctgtatta gcggccctag
      661 gaatgacaaa gttacgtgag tttgccaaaa tacctgctga ttcggctgtt gcagtcttat
      721 tgtcttcagg gctggctata ggcatcgtac tgattagtct ttcaggagga tttacgcttg
      781 acttatttag ttttcttttc ggaagcattc ttcttgtgag tgttcaagat ttgctcatga
      841 ttctaatagt gagcagtata gtacttgcga taatttctct tatttataaa ggactaacat
      901 atgtcacctt tgatgaggaa caagcagcag tcggtggcct gagcgtaaag aacataaatt
      961 atcttttcat agtgattgcc agcgtaacgg tcattgcatc gataaggttg gttggagtgt
     1021 tactcatatc atctctcata gtactgccaa acatcactgc aattacaatg ggcaaggggt
     1081 tcaagaaaac tgcaatcata tcctgcggca tatcggcctg ttcggttatt gtgggtatta
     1141 ttgtttctta cattatgaat attgcaccaa gtggagctat tgttctaaca gcaactgcaa
     1201 tttttctcac tgctgttttg ggaaaacaca tagttaggaa aattaggcga tcagatatta
     1261 acattcaaga cgttaccatg agtgactaaa aaaccctcca ttcaattatc gtaattagta
     1321 atatcatcaa tcaagaattg cgattttggc tcactcttat cagatctatt ctatttgtat
     1381 ttccttacct tttggctggg tttggacttt cttttggaag gtaatttcaa gtattccatt
     1441 gttgtaattg gatttagctg tttcaatatc tgtttctggc ggtatttcaa taacttcatg
     1501 atacttcctc ttggcgtcat cggctgtaac ttctacttta ttatcgtaag catttatctt
     1561 gatcttttct ttagtaacac ctggcatttc tattacaacc ttcacttctt tgtccgttgt
     1621 tgtgatatct gacataggct ctctttcaga tgtgataacg ggagtgttaa acgaggcacc
     1681 accacttcgc attggagatt taacatttcc gaattctctt actctaggtt ttccatcagg
     1741 tcctattgtc attgaataac catagactat gggtccgact tctctcacct taccttctgg
     1801 tgtttcatat tcttttatca gatcctttgg tgctttcgtt tcgatatctt caaatacctt
     1861 ttgcatttcc cttctcattt cgtcgaatcc gctgaacatg tcaccaaaat tatttgcatt
     1921 atttcttctc gtaaagggcg tacttcctga accaaagaat ttggcaaacc agtcaaatgg
     1981 atcaatactc aattctagaa aacctcatac aacaacatgc acaaagtgat atttaagtcc
     2041 tataaccaaa tttcgccatt taatttaact ttttagttgt gccgtcagct tttcctaaat
     2101 tacatcatat aatattataa taattgcaac tattatagtt cagtttccca gaagacaatt
     2161 gacaggaaag aataagtgtt atgaattcca agaagcaata tgacagctgg caaatacttc
     2221 aatagggctg ttatggccct tgatgcccca catgtaggat ttgtagtgag agagactccc
     2281 gataaaatcg tagtattcgg agagaagaat gaaagatacg acattcctat ttcagagatt
     2341 cagcatgtca gcaagaatgt tttgataggt cttaattttt ctgatattgc aaagaagtat
     2401 aaggtggacc gtgatgcgcc acttccaaca tcaaaatacg ttgatccttg gggttcggat
     2461 ggaacagttg atttaacaga atatatgaag cgatatggaa agacactttt caataaaggc
     2521 gtaagaatag aaaatgaaga tca
//
LOCUS       DASSIK010000322         2441 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_657370, whole genome shotgun sequence.
ACCESSION   DASSIK010000322 DASSIK010000000
VERSION     DASSIK010000322.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2441)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2441)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2441
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_657370"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(284..832)
                     /locus_tag="VFI64_06000"
     CDS             complement(284..832)
                     /locus_tag="VFI64_06000"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HET7242876.1"
                     /translation="MGRVFQLIQSNKVYSGELSVNVNKFRVNGLIMKKEFIEYADSVG
                     ILPVDKHENLLLIQQFRFATKKTITEIPAGKIEKGESPEQAALREMNEEIGYSGKLTP
                     ILQLYLAPGYSTEKMHLFLATGLKRIAKRLRMDNDEIINTERLNLHTAIERCLDGEIE
                     DCKTVSAILLYAQLYHNCNYSH"
     gene            complement(983..1516)
                     /locus_tag="VFI64_06005"
     CDS             complement(983..1516)
                     /locus_tag="VFI64_06005"
                     /inference="COORDINATES: protein motif:HMM:NF018627.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242877.1"
                     /translation="MKTLAIDLDSVLADTMLIWIQEYNIRKKADILKSDIVSWDISQV
                     FDITVEEISQIFTDIWQRHWRNIPPTEPNIGMTTKKLHEKGFRISILTKRFRPSVVNV
                     AKWLDLYEVYSDDLLFIYDDRPKAEYPFDILVDDAPVNLVSIKQPKLGILYSQPWNMD
                     FVWATRIDKLSQLDRLI"
     gene            1783..2208
                     /locus_tag="VFI64_06010"
     CDS             1783..2208
                     /locus_tag="VFI64_06010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242878.1"
                     /translation="MSMVDLFKSLCDKIIKTDGYVRFVGLADEHGTLLASSERKGLKP
                     LLDNEQTAQYALAAVTRQYTRIRWQSILGKNDYTCSYYEKVFRVTIPITDARNRLCFV
                     IIFTFDVAAKRFHSIIMNKIIPVVRESEPKLMKKLSKRK"
BASE COUNT          730 a          464 c          417 g          830 t
ORIGIN      
        1 cgttaactgg ttatcaaaaa aaagttttat cagccttttg cttggtcact gaacgcctaa
       61 tttaaaaatg atataacctg attattattt agaccaagta cgcctttcat ccgattccgg
      121 agtagaacat ttagtcctca gattcaataa tacctcgtct attaaatagt acttgacgta
      181 gtttttttat gatagcactg ttcaagccag ctgcgtttat cgctaccgtt agtattgcta
      241 atccaaggcg tggacgaatt aatttatgag atttctcggg ttattaatgg gagtaattac
      301 aattatgata aagttgtgca tataacaaga tggcagacac agtcttgcag tcttctatct
      361 caccatcaag gcatctctct atagccgtat gcaaattcaa acgctcagta tttattattt
      421 cgtcattatc catacgcagt cgtttcgcta ttctttttaa gcctgtggcc aagaaaagat
      481 gcattttttc tgtagaatat ccaggagcca agtacaactg tagtattgga gtaagttttc
      541 cagaatatcc tatttcttca ttcatctctc gtaatgcggc ctgttctggt gattcccctt
      601 tttcaatctt gcccgcagga atttcagtta ttgttttttt ggtagcaaaa cgaaattgct
      661 ggattaacaa gagattttcg tgtttatcca ccgggagaat accaacagaa tctgcatatt
      721 ctatgaattc cttcttcatg atcagtccat ttacccgaaa tttattgaca ttcactgaaa
      781 gttctcctga atacaccttg ttactttgga ttaactgaaa tacgcgaccc atgcggaacg
      841 caaatagatt tatcctttta ctttaatgaa tatttgcatt ctttgatagt gaataagtgt
      901 atcatattcc tggacaggta cttctagttg gaattttata atgatctaat attctttgga
      961 gattggcgtt tgattaattc tatcaaatca aacgatctaa ctgacttagt ttgtctatcc
     1021 gagtagccca tacgaagtcc atattccaag gttgactata gaggattccc aacttaggct
     1081 gcttgatgct cactaggtta actggagcat catctactag tatatcgaaa ggatattctg
     1141 ccttaggacg atcgtcataa ataaacagga gatcatcaga gtatacttcg tacagatcca
     1201 gccatttggc tacattaacc acagaaggtc tgaacctttt agttagaata gaaatcctga
     1261 atcctttttc atgtagcttc tttgtggtca tgcctatatt tggttcagta gggggaatat
     1321 ttctccaatg ccgttgccat atgtctgtaa atatctggga aatttcttcg actgttatgt
     1381 cgaagacttg tgaaatatcc catgaaacta tgtcactttt taggatatca gctttcttcc
     1441 ttatattgta ctcttggatc caaatcagca tcgtatcagc caacacagaa tccaaatcta
     1501 ttgcaagagt tttcatctat attgacctta gctgagagaa tgattttaga aagtatataa
     1561 tttatctctt aacaatttcc atctccccat ccttatgaat tgacgaaatc ctattgttta
     1621 ttattgtatt aataaagatc gtgacaaggc gactaattgt atcgatacta tttaagcact
     1681 ttagatgtct atccctgtcc atgaatgctt catccaaaat tccgctattg ttgaaacctt
     1741 atggttaaat catcaagatt tattatgagg tattggggtg aaatgtccat ggtcgatctt
     1801 ttcaaatctc tatgtgataa aataattaaa accgatggat atgtaaggtt tgtgggtctc
     1861 gcagatgaac atggaacgct tctagctagt tctgaaagaa aaggactcaa acctcttcta
     1921 gataatgagc aaacagctca atatgcgctt gctgctgtga cacgccaata tacaagaatt
     1981 cgatggcaat ctatcctagg aaagaatgac tacacttgtt catattatga gaaggtgttt
     2041 agggttacaa tacccatcac tgatgccagg aatcgtcttt gctttgtaat tatctttact
     2101 tttgacgtag ctgccaaaag attccattcg ataatcatga ataagattat tccggttgtc
     2161 agagaaagcg aaccaaaatt aatgaagaag ctttctaaaa gaaaatgata tgtatttctc
     2221 gctctctcca tcgcacattc gtatttccta accactagta aatccaataa atgagttagt
     2281 cctgtctttc tacagacgaa acttcccacc tttgcacagt gtacccttaa tgcaaaatgt
     2341 atagaatgaa ataattacaa aatacgatgc taatccgtat tactttctgt gatctttttt
     2401 caggatattc ttcatgaaaa gttataactt acgcattttg a
//
LOCUS       DASSIK010000323         2036 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_770813, whole genome shotgun sequence.
ACCESSION   DASSIK010000323 DASSIK010000000
VERSION     DASSIK010000323.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2036)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2036)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2036
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_770813"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..413
                     /locus_tag="VFI64_06015"
     CDS             <1..413
                     /locus_tag="VFI64_06015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242879.1"
                     /translation="KGLIGKDEYYELAKGLSEKIGEVKRSGLLNSKKEYSAPLQEIKD
                     ILENLDDAVEAVKRGDLSQTTENFDQLISPTKHGSTMIEQFFDQHRDLRLFRIRLTDR
                     GQEYLTSHKSEILQLLDDVIEKIRSNPVSRTIRK"
     gene            574..1398
                     /locus_tag="VFI64_06020"
     CDS             574..1398
                     /locus_tag="VFI64_06020"
                     /EC_number="2.4.2.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfide-dependent adenosine diphosphate thiazole
                     synthase"
                     /protein_id="HET7242880.1"
                     /translation="MKNNMEKVFAHVSEKEITRAIANMFNETLVEYTDSDVIIIGAGP
                     AGLMAGRDLAKNGIKTLIIEQNNYVGGGYWVGGYMMNPVTVRAPAQKIWEELGVPFRK
                     ISDSLYATWGPHACSKLIAAACDSGVRFLQLTKFDDLVLKDNRVSGVVVNWMPVSALP
                     RNITCVDPVALESKIVIDASGHDSVAVKRLMDRGYIEWKGMDPMWVEGGEDAVVEKTG
                     EVFPGLIATGMSVTETHGLPRMGPTFGSMLMSGRKAAEVTLHKLKEISPRPKIQIK"
     gene            1434..>2036
                     /locus_tag="VFI64_06025"
     CDS             1434..>2036
                     /locus_tag="VFI64_06025"
                     /inference="COORDINATES: protein motif:HMM:NF042804.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6775 family putative metallopeptidase"
                     /protein_id="HET7242881.1"
                     /translation="MKIAYIHLYGSELITKKRSYVLKKKLERVFPKVLIDVRKSISIS
                     LPDDYQEICRTIDRTSTPYTNGFQNKSFNNNDSFQGKDKCLILLDGFELQRIYSDFIC
                     VDEMELGHVHVIFKDSLISTYDEDTRRFHARTLICGTPSIISTPGIIEAPAKPRDYYY
                     KMMLSDVLNLSNEEIKTEFNERFIDYGDPSVFCAALGFAVQ"
BASE COUNT          691 a          341 c          446 g          558 t
ORIGIN      
        1 agaaagggct aataggaaag gatgagtatt acgaactagc aaagggatta tccgaaaaaa
       61 taggcgaagt gaaacgatct ggtttattaa actcaaagaa agaatattca gctcctctac
      121 aagagatcaa agatatcctc gaaaatttgg acgatgccgt ggaagcggta aaaagaggcg
      181 acctaagtca aactacagaa aactttgacc aactcataag tccaacgaag cacggaagta
      241 caatgattga acaatttttt gaccagcatc gtgacttgcg gctgttccgg atcaggttga
      301 cagatagagg gcaagaatat cttacgtctc acaaatctga aatattacag ctgcttgatg
      361 atgtcattga aaagataaga agcaatcctg tttcgagaac tattcgtaaa taacctgaga
      421 actagctttc atatgcatta tgcctataca caaagtacga agaaagaggg aagaacgact
      481 ttattaagat taaattagct catcgcgctg aatttgtcac actgatccaa atctatctac
      541 ttgtttctag aaagcatatt aatatcagtt tgattgaaaa ataatatgga aaaagttttt
      601 gctcacgtga gtgaaaaaga aattactaga gcaattgcta atatgttcaa tgaaaccctt
      661 gttgaatata ctgattcgga tgtaataata attggagcag gccccgcagg cttaatggct
      721 ggaagggatc tagcaaagaa tgggattaaa acgctcataa ttgaacaaaa taactacgta
      781 ggaggtggat attgggtggg aggatatatg atgaatccag ttacagttag agctcctgcc
      841 caaaagattt gggaagagct tggagtaccc tttagaaaga tttccgactc tttatatgct
      901 acatggggtc cacatgcctg ttcaaaactt attgctgctg cttgcgattc aggtgtaaga
      961 tttctacagt taaccaaatt tgatgatctg gttctaaagg ataatagagt aagtggcgta
     1021 gttgtaaatt ggatgccagt ttctgcgctc cctcgaaata taacttgcgt cgatcctgta
     1081 gctctggaat caaagatcgt gatcgatgcg tctgggcatg attctgtagc cgtcaaaaga
     1141 ttaatggata gaggatacat cgagtggaaa ggaatggatc ctatgtgggt ggaaggtggc
     1201 gaagacgccg tagtggaaaa aactggagaa gtgtttccag gattaatagc aacaggcatg
     1261 tcggtgactg aaactcatgg tcttccccgt atgggaccta cttttggttc tatgctaatg
     1321 tctggcagaa aagcggcaga ggttaccttg cataagctaa aagaaatatc tccacggcca
     1381 aaaatacaga taaaatgaag taccaataag gcaaagcaca ttcaagattt tttatgaaaa
     1441 tcgcgtatat acatctgtac ggtagtgaat taataacaaa gaagagatct tatgtactaa
     1501 aaaagaaatt agaaagggtc ttcccgaaag tactgatcga tgttagaaaa tcaatttcga
     1561 ttagcttacc tgacgattac caggaaatat gtcgaactat cgatcgaacc agcactcctt
     1621 atactaatgg cttccaaaac aaatctttta acaataatga ctcttttcaa ggaaaagaca
     1681 agtgtcttat tttgcttgac ggatttgagt tacagagaat ttattcagat tttatatgtg
     1741 tggatgaaat ggagctgggg cacgtacatg taatttttaa agatagtcta atttctacat
     1801 atgacgaaga taccagaaga tttcatgcaa ggacattaat ttgcgggacg cccagcatta
     1861 tttctacacc cggaattatt gaagctcctg cgaagccgag agactactac tataaaatga
     1921 tgctatctga tgtacttaac cttagtaacg aagaaataaa gacggaattc aatgaaaggt
     1981 ttattgatta cggcgatcct tcagtgttct gtgctgcctt aggatttgca gttcag
//
LOCUS       DASSIK010000324         4239 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1250490, whole genome shotgun sequence.
ACCESSION   DASSIK010000324 DASSIK010000000
VERSION     DASSIK010000324.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4239)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4239)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4239
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1250490"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1231)
                     /locus_tag="VFI64_06030"
     CDS             complement(<1..1231)
                     /locus_tag="VFI64_06030"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HET7242882.1"
                     /translation="MRSHSTLKFVIFLISILVLSMALSALLPVYAQEEFRQREFVEEG
                     KPRLVDPHLKVEQVTEGLDTPTTMAFLGPNDILVLEKDKGTVQRIVNGKISGQPLLDV
                     NVANSVERCMCGIAISKHNSTTFVFLYYTEINGKDGEDRQGKEPIANRLYRYELVDNK
                     LVNPTILLDLPATPGPRHNGGFIIIGPDNNLYVPIGDIDGSFRGPDSQTVTQNYQNGM
                     DPDGRSGILRITQDGQPAGTGILGDSIPLSLYYAYGIRNSFGLGFDPVTGNLWDTENG
                     PGNSDEINLVLPGFNSGWQEVMGLANDENGFDQSDLVNFDGKGVYRDPELVWLNTAGP
                     TAVLFLTSDKLGPQYVNDMFVADVHNGRIYHFDLTSDRTHLVLPPPLAGKVIKNPRAT
                     GLDQIMFGEEFGGVTDLK"
     gene            complement(1368..3011)
                     /locus_tag="VFI64_06035"
     CDS             complement(1368..3011)
                     /locus_tag="VFI64_06035"
                     /inference="COORDINATES: protein motif:HMM:NF012401.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HET7242883.1"
                     /translation="MTARADHGYVKSFVAGIVAGALAIGISLLIRSLVGGPFLPELAS
                     QTLFSLTPGEFESQAVENFGPLAKYSAFIAALVINFVLYGLFGILVDKLHSKFPWKGY
                     IGKSLQSALIVYVILLIMAISLLTTIQLRTAGGSISISVLTISLVLPQIIFGFIFSSF
                     FRGTGRILKKRPETTSETSGMNSGRREFLRLVVVSAIAFPILFFGLNRLFSGQGQEQQ
                     ETSSSSSQLIPQSLSKPIGFEDPMLATLLASELTPTYLFYRIDINPIVPVIDEKTWNL
                     TVKGLVGNPITVTYEEIKSMPFVEQYATLECVSNKIGGDLIGTALWRGIRLKDLLDKA
                     KVMPGAKYIVFRCSDGYDVGIPLENGMMDGTLLAYDMNLAPLTTAHGFPVRAIVPGLY
                     GMMNPKWITEIEIVNNVYEGYWQRNGWTNTADVHTNSSIVIPGQAPIRHRFRKLDETP
                     NIVPGEKAPIAGIAFGGDRGISKVEVSTDGGTTWKSAVIKDPLSRFTWVLWTAGFTPT
                     GKENYNIVVRATDKTGQVQTSELNKPFPDGATGYHMVNV"
     gene            complement(3104..3493)
                     /locus_tag="VFI64_06040"
     CDS             complement(3104..3493)
                     /locus_tag="VFI64_06040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242884.1"
                     /translation="MNLELFATAFMTTSLLLIVTHIVFAVPVTASTRMIDKDDNVVEV
                     KSMMMPEGNMTFGSSLENAKMHLMEALMDLKNGDTKGATMQLNMTDQAIKLHERELES
                     LMLTMKGNNMTSSSEMLKSRNESTIMS"
     gene            complement(3852..4148)
                     /locus_tag="VFI64_06045"
     CDS             complement(3852..4148)
                     /locus_tag="VFI64_06045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242885.1"
                     /translation="MYVQYDKLYAGTVAFMFLFLVTYTTFANAQNVTTNASNAVGNAS
                     ASVNQTVSELGKNASDTGETLLNQTGEVAKKIVGVAANVLSNISGEIKQGVGAK"
BASE COUNT         1209 a          884 c          788 g         1358 t
ORIGIN      
        1 tctttaggtc ggttactcca ccaaattcct ctccaaacat tatttgatca agtccggttg
       61 ctctaggatt cttaattact ttaccggcaa gtgggggtgg tagaacgaga tgcgtcctat
      121 cactagtcaa atcaaaatga tatattctac cattatgaac atctgcaaca aacatgtcgt
      181 tcacatattg agggcccaat ttgtcggaag tcagaaacaa tacagcggta ggaccggcgg
      241 tatttagcca gactaattct gggtctctat agacaccttt accatcaaag ttaaccagat
      301 cggattgatc aaatccattt tcatcatttg ccagacccat tacttcctgc catccgctgt
      361 taaatccagg tagaacgaga tttatttcgt cactgttgcc aggtccattc tctgtgtccc
      421 ataaattacc tgtcacagga tcgaatccaa gaccaaagct gtttcttatt ccatacgcat
      481 agtataagct caatggaatg gaatctccaa gaattcctgt tccagctggt tggccgtcct
      541 gtgttattct aagtatacca cttctaccat caggatccat tccattctga taattttgag
      601 taactgtttg ggagtctgga cctctgaacg agccatctat atctcctatt ggaacatata
      661 gattgttgtc gggtccaata ataataaaac ctccgttgtg tcgaggacct ggtgtggctg
      721 gtagatctaa caagatcgta ggatttacca atttattgtc tacaagttca tatctgtata
      781 agcggtttgc tataggttct ttaccctgtc tatcttcacc atctttccca tttatttcgg
      841 tataataaag aaaaacaaaa gtcgtagaat tatgttttga tatagcaatc ccacacatac
      901 atctttccac cgagtttgcc acattgacat ctaatagcgg ctggcctgat attttgccgt
      961 tcactattct ctgtacggtt cctttatctt tctccaagac caagatatca tttggtccca
     1021 aaaacgccat agtagttggt gtatccagtc cttctgtaac ctgttctact tttaaatgag
     1081 gatcaacaag cctaggttta ccttcttcta caaattcacg ttgtctgaac tcttcttgag
     1141 catatactgg caacaacgcc gatagggcca tgctcaaaac tagaattgag atgagaaaaa
     1201 tgacaaattt taaagtagaa tgagatcgca ttgctaattt tgctcataga ctccctaatt
     1261 tagactgtga ggcgaattct gactgattta atccataatt ctatcatttg ttcgctattt
     1321 tccaaatcag gctttaatgg cacgttccaa gactagaaca actatttcta aacattgacc
     1381 atatggtatc cagttgctcc atctggaaat ggtttattga gctcggaagt ttggacttgt
     1441 ccagtcttgt cagttgccct gacgactata ttgtaatttt ctttacctgt cggagtaaat
     1501 ccagcagtcc ataaaaccca tgtaaatctc gagagtggat ctttgataac agcagatttc
     1561 caagtggtac ctccgtctgt gcttacctcg acctttgaaa ttccacgatc ccctccgaag
     1621 gctattcctg caattggggc cttttcacca ggtactatat ttggagtctc atctaacttt
     1681 ctgaatctgt gccttatggg tgcttgtcct ggaataacaa tagatgaatt tgtatgtaca
     1741 tctgcagtgt tagtccaacc gttcctctgc caatagccct cataaacatt gttcacaatc
     1801 tctatttctg ttatccattt tggattcatc attccataca atcccggtac gatagctctt
     1861 acaggaaaac cgtgagcagt ggttaaagga gctaaattca tatcataagc caataaggtc
     1921 ccatccatca taccgttttc caagggtatt cctacatcat aaccatcaga acatctgaat
     1981 acgatatatt ttgctcctgg catgacttta gccttatcaa gcagatcctt gagccgtatg
     2041 cccctccata gtgccgtacc aattaggtca cctcctattt tgttgcttac gcactctagt
     2101 gtagcatatt gctctacgaa aggcatcgac tttatttctt cataagtgac cgttattgga
     2161 ttgcctacta gaccttttac tgttagattc caagtttttt catcaatcac gggtacaata
     2221 ggattgatat caattctata gaaaagataa gttggagtta gttcagaagc aaggagtgtt
     2281 gctagcatgg gatcttcgaa accaatcggt tttgatagtg attgtgggat tagctgtgat
     2341 gacgaactag aagtttcttg ttgttcttgt ccttgtccag aaaacaaacg atttaatcca
     2401 aaaaacaaaa ttggaaacgc gattgcggag acaacaacca agcgaaggaa ctcccttctg
     2461 cctgagttca tcccagatgt ttcggatgtt gtctctggac gttttttcaa aattcgtccg
     2521 gtacctctaa agaatgatga aaaaataaat ccgaagatta tttgaggcaa aacaagggaa
     2581 attgtcagaa cagaaatcga aattgatcca ccggcagttc taagttggat tgtagtaagt
     2641 agcgaaatgg ccatgatgag caagataaca tatactatta aggcggactg aagtgatttt
     2701 ccgatatagc ctttccatgg aaatttgctg tgaagcttgt caacaaggat tccgaagaga
     2761 ccgtataata caaaattaat tacgagagcg gctataaaag cagaatattt agcaaggggc
     2821 ccaaaattct ctactgcttg tgattcaaat tctccgggcg taagtgagaa taatgtttgg
     2881 gatgcaagtt cgggaagaaa tggtcctcca acgagtgatc ttatgaggag tgaaattcca
     2941 atggctagag ccccagcgac tattccagct acaaaggatt tgacatatcc atgatctgct
     3001 ctcgctgtca catctgtact tttttggtaa atgatttaag tcttttttca gctgtgatct
     3061 aatatagtgc ttgcgaaaat cgtacttttt gacttccttt gactcaactc atgattgtgg
     3121 attcattacg ggactttaac atctctgaag atgaggtcat attgttccct ttcatagtca
     3181 gcatcaggct ctccaattct cgttcatgta actttattgc ttgatcagtc atgttgagtt
     3241 gcattgtggc ccctttggta tctccattct tcagatccat taaagcttcc atcaaatgca
     3301 tttttgcgtt ctcaagtgat gatccgaagg tcatattacc ttctggcatc atcatgcttt
     3361 tcacctcgac tacattgtca tccttgtcaa tcatccgagt acttgctgtt acgggaacag
     3421 caaatacgat gtgagtaaca atgagcaata acgaggtcgt cataaatgca gtagcaaata
     3481 attcaagatt catccttttt gtccagtaac agttgggaat taccttatat aaaggctata
     3541 acttttacaa tgtttgatat ttctaaaact aagtaaacat tgctctccgt tgatacagga
     3601 acaatgtggt gtaagaataa aataaggcat gttgcatcct aaattgataa cattacgttt
     3661 tataacttcc cttacgtata catcgaagta tgtcgcattt ttagaatggt aatactaaat
     3721 tgtggtttta attaacttgg cagtgcaata tttttctaaa tggtagtaac tgatgacatc
     3781 aattaccctc taaaaagata tacagttggt aaccaataaa aagtatggat agtaggatta
     3841 tgctaatcct actatttggc tcctactcct tgcttgattt ctccacttat attgctaagt
     3901 acgttcgccg ccacaccgac tatcttttta gcaacttcac ctgtttgatt caagagtgtt
     3961 tcaccagtat ctgacgcatt ctttccaagt tcagagacag tctggtttac cgatgcgctg
     4021 gcgtttccaa cagcatttga tgcatttgta gtcacatttt gtgcattagc gaatgttgtg
     4081 taggttacga gaaacagaaa catgaaagct actgttccag catatagttt atcgtactgt
     4141 acatacatgc aattgcttta aagtgtttgt atcgggcata ggcagacaat catacctcga
     4201 atgtctaata tcctcagaag gatcattaca aatcttata
//
LOCUS       DASSIK010000325         2714 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_658523, whole genome shotgun sequence.
ACCESSION   DASSIK010000325 DASSIK010000000
VERSION     DASSIK010000325.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2714)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2714)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2714
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_658523"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            673..894
                     /locus_tag="VFI64_06050"
     CDS             673..894
                     /locus_tag="VFI64_06050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242886.1"
                     /translation="MGTNNKGKCHFCYEDEEKIDRANEASTLFLGLPCCDSCFLEIID
                     LESEIMDVLVKDGFFTDQGRGNSKKQQLL"
     gene            1911..>2714
                     /locus_tag="VFI64_06055"
     CDS             1911..>2714
                     /locus_tag="VFI64_06055"
                     /inference="COORDINATES: protein motif:HMM:NF013832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242887.1"
                     /translation="MLKTVKFSKSSAIYFLLVFAPIAVVLNLVGADHLILFAMAIIGL
                     IPLAKLIGDSTEHLATHYGATLGSLLNVTFGNAAEIIISVVAINAGLIELVKASITGS
                     ILGNIMLIFGLSLIAGGVKHKEQIFNRENAGLQSSLIFLAIIGLAIPTILSATVLKPI
                     DLVSQLKLQILSDVLAIVLICVYVAGILFTFFTHKHLFVAPGGADEVLEKDHNRWSKR
                     KSFLILGASMVGVVAVSEILVGSVEETSKQFGFGELFVGAIIVGIVGNAA"
BASE COUNT          866 a          444 c          538 g          866 t
ORIGIN      
        1 cgtgcaaacc aaaacgaata cgttcattac aatggccttt taagtccgaa gggaaataaa
       61 attcttctca cgatcacatc aggcgcatga tgccaaaatt gttatttatg gcgagaagga
      121 cttaggacct ttgtaggtaa atatgatgca tttcatttac tcatttttga attcagattt
      181 ctgatagact ccctcccttc cttgaacgtg atgcatagcc tttattctgg catataaaat
      241 taaaaaacgt gacaaaatgt gacgtaatag ggaaattaac agatttactc aatacctatt
      301 atatgaaaaa agtaaattca gtgtctgtaa gctgtcccct tgtaatagaa atgtacctgt
      361 tcatttcgta ccttttgtcc tgtgtatcac aaagattgat tatcatcaag ataaatacca
      421 ttcagagact taaaaggcaa gaaaaattct tttgtttcga atgtggactg tatttatctc
      481 aagaggatat gagtatttct atagcgggtt ggtttggcgt gtgtagactt tgcaatgaac
      541 cacttcactc attttaggaa taagttttaa tctgcggtga gtatctgaaa ttaattagct
      601 ctgacttttc aagaattatt ttcagagtta ctcttttatg tccgtctgac taatattgaa
      661 tagtcttctt tcttgggaac taataacaag ggcaaatgtc acttctgtta tgaggatgaa
      721 gagaaaatcg accgagctaa cgaagctagc actctgtttt taggattacc gtgttgcgat
      781 tcgtgttttt tagagataat agatcttgaa tcagagataa tggatgtctt agtcaaagac
      841 ggttttttca cagatcaagg gcgtggcaat tcaaaaaagc agcaattact gtaacaaatc
      901 ctcgtcggcc atcatggatc ataattcagt tagacaaagc gcggaattaa aaaaaacaaa
      961 tataattacc ttaacgtatg aaatgatctc aatcttaatt aaaaagtctt ttttgtagag
     1021 tcagaattat ttttcagtta aattcttatt tttgcagacg ggattgtata tcagtaagat
     1081 tcgaattgtc aaagggtgcg tcgaacgact ggattagttt agtcgtaaaa tatagcagta
     1141 aatgcaagac gtgcagcaag gctatattta aaggggaata tgcagtatgg tctaggtcaa
     1201 ctcaatctat aaagcacatc gagtgtcatt caagggatct tgaatccctg acgtcgccag
     1261 attctataca taatatacaa ctaaaatgtg cgatatgtaa tcggcctgcg ggttgtcccg
     1321 aatgtgaatt tgaacaagat tgtgatcgta tgaaagtatc acagctttgc atctgtgaaa
     1381 aatgctacct tgatgagaat gctttagaaa tgtatcatca tgcagtatcc aatctgcttt
     1441 ttaaatccga ttcatctaaa agaaattagt cataagttag tatacccacg gttactgaag
     1501 gagatacttg atggcagaaa attaaaggag aaccagagat tgacaatgtg gaatgagaac
     1561 aagccattgc tttctggata cttcttcagg ggactcattt gtctactaat atctaaggca
     1621 gtaagattga aagcattttt aatcacctaa ataatgcttt tccagatgca agaaataaaa
     1681 taggggcagt ttggaaaaaa tcttcaaact gcgaagggat gttaatctcc atcggtggaa
     1741 tatatgatct cacgtaattt gtagagctaa tcgcataagt tcagatttct tggcaataca
     1801 tgacaacgaa ctatcttttg cacaggtcgc cgtgccgtgg aatgttaaga agaatcttga
     1861 gttttcaaat aagttgaaat actgcattat attaatgacc aaactaataa ttgcttaaga
     1921 cagtaaaatt ttcaaaatca tctgcaatct acttccttct tgtctttgca ccaatagcag
     1981 ttgttcttaa cttggttggt gcggatcatt tgattttgtt tgcaatggcg ataatcggtt
     2041 taattcctct tgcaaaatta attggtgatt ctacagaaca tctcgcaact cattacggcg
     2101 caactcttgg ttctctactc aatgtaacct ttggaaatgc tgcggaaata ataatatccg
     2161 ttgtcgctat taatgcgggc ctaatagaac ttgtaaaagc atcaattaca ggttcaattt
     2221 taggaaacat catgctaata tttggtctaa gtttgattgc aggtggagtt aaacacaaag
     2281 agcagatatt caacagggaa aacgccggat tacaatcttc tctaatcttc ctggcaataa
     2341 taggtttggc aattcccact attctgtcag caacggttct gaaaccaata gatcttgtaa
     2401 gtcaacttaa attacaaatc ttaagcgacg tcctcgcaat cgtattgatc tgtgtttatg
     2461 ttgcgggaat attatttaca tttttcacac ataaacatct ttttgtagca cctggaggcg
     2521 cagatgaagt tttagaaaag gatcataatc gatggagtaa gagaaaatct tttctcatat
     2581 tgggtgctag tatggttgga gtagtcgctg taagtgagat cttggtggga tctgttgaag
     2641 agacaagcaa gcaatttgga tttggtgaat tgtttgttgg agcgattata gtaggaatag
     2701 taggtaacgc tgct
//
LOCUS       DASSIK010000326         5030 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_658854, whole genome shotgun sequence.
ACCESSION   DASSIK010000326 DASSIK010000000
VERSION     DASSIK010000326.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5030)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5030)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5030
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_658854"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            343..987
                     /locus_tag="VFI64_06060"
     CDS             343..987
                     /locus_tag="VFI64_06060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242888.1"
                     /translation="MKQYMQNRQRRMQAGDEDQHSLHSFSSMIRIKSSKTELLHLGIA
                     TLLVTAVGLSLNSYRYISWQFITIFVSAFLVHELAHKFLAQFYGSWAEFRGQLYGLLI
                     TAISAIPIIPFKFIAPGAVMVGLTDRNRFGRVALIGPLTNLVMGFAFFLLYNLNQSSY
                     FFVAGASFNGWIAMFNLLPFGVLDGQKIFEWNKVVWVSTMALAMILFILSQRIR"
     gene            complement(1078..1722)
                     /locus_tag="VFI64_06065"
     CDS             complement(1078..1722)
                     /locus_tag="VFI64_06065"
                     /inference="COORDINATES: protein motif:HMM:NF015411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent F420 reductase"
                     /protein_id="HET7242889.1"
                     /translation="MKIGIIGAGDVGSTLGKEWAKRGHEIVFGVRNIQSPKVKSLLKI
                     ADSNIKVATISEAASFGQVVLLAVPWEAVKETIENAGDLSGRILIDPSNPLSSDLKDL
                     IVGPSTSAAEEIAKLAQGAKVVKAFNAIGAKTLANLKFGQYKADTFICGDDSGAKSIV
                     RKLAMEMGFDVLDVGPLSNARLLENLALLWIELAFRQEMGPNIAFKLLTRTSGM"
     gene            complement(3466..>5030)
                     /locus_tag="VFI64_06070"
     CDS             complement(3466..>5030)
                     /locus_tag="VFI64_06070"
                     /inference="COORDINATES: protein motif:HMM:NF015213.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FTR1 family protein"
                     /protein_id="HET7242890.1"
                     /translation="KIASSVSKNRNSEINLSFAQLQDFMTKKLDKIEISRLISSIERT
                     VEDSVSSPPSHTSKTEKQDNAEIRSFQSSTGSQKGTNAVATSDISIQTAKTNETKGKT
                     FADIQELSRGFGIYTGERKGMGQTDESSKGVVRDNIDQIRLKLENVLQEYKEKKYDES
                     LSSSRSAYLDSYENIEVPLRPINPDFTLDMEIKFAQLRNLIQSKVPYESVQAKIIEIR
                     QGLDESERLVTGTGIIAPTIAFSTSFTIIFREGLESALIIGAILTYLEASRNDRFKKH
                     VYYGIAIAVGGTALTWFIAEYIIKISGASRELIEAIAGISAVVVLFWVSFWVLNKVET
                     KKWIEFVKAKVWHATTTGSIMVFIMLSFFTVYREGFETVLFYQAMLSFAKYMEWYVIA
                     GLLIGLAVIVGIVFLIKKIGKKLPLRVLFGLTMGVGAYMSIAFIGNAVRSFQEVGYIS
                     TTHLIGIIPRLDINLAKMTGIHPTLETVIAQLILLCVYVVGSLYILVIQPRRKKAIET
                     SRKSMADFGKKQ"
BASE COUNT         1519 a          994 c          851 g         1666 t
ORIGIN      
        1 agtagatttt gtaatcacct attaatataa aaataaaata gtgtgggaca agcagatatg
       61 tccagaaaac ttagtaacac tatagagtca tcaattaagc cgtctgaaga cacaattcaa
      121 ctatgcagac tgtgagcata atactaatcg tccttcatgg cgtttctctg gaatcttctt
      181 tgtcatgcct taaaatatgg gttcgatcct aaatgatatg gcataaaaag aatgaaatgt
      241 cattggtgtg ggattaacga gaatatacca tttatatgca attattgtgg agaatcgttc
      301 tgtgatctgc atagaatacc catgaatcat tcttgtgcga acttgaagca atatatgcaa
      361 aacagacaga ggagaatgca ggctggcgat gaggatcagc attctttaca ttctttttcc
      421 agtatgataa gaataaaaag ctctaaaaca gaactattac acttaggcat tgcaacactc
      481 ttggtcacag cagtggggtt gtcactaaat tcttatagat atatatcatg gcagtttata
      541 acaatattcg ttagcgcatt tcttgtgcac gagcttgctc acaaatttct tgcccaattc
      601 tacggaagct gggctgagtt ccgtgggcag ttatatggtc tattaattac agcaatatct
      661 gcgattccaa ttataccatt caaattcata gcacccggcg cagtgatggt tggtcttacg
      721 gacagaaacc gatttggaag agtagcacta ataggacctt tgacaaacct tgtcatgggt
      781 ttcgcattct ttcttctata caacctaaat cagtcaagtt atttcttcgt tgccggagct
      841 tcatttaatg ggtggatcgc aatgttcaat ttgttaccgt ttggggtatt agatggacaa
      901 aagatcttcg aatggaataa ggtcgtatgg gtttccacaa tggctttagc tatgatatta
      961 tttattctct cacaacgcat acgataaaat taatctacta ctcattatta gttctaattc
     1021 tccattgtaa cataaaggcc atcttttttg aggaaggctg catcttcata atttcattta
     1081 cattccactt gttctggtca ataatttgaa agcaatattg ggacccattt cctgtctaaa
     1141 tgctaattca atccagagca acgccaaatt ttctaatagt ctcgcgttag aaagaggccc
     1201 gacatctaga acatcaaaac ccatttccat agccaatttt cttacaatcg attttgcacc
     1261 agagtcatca ccgcaaataa aagtatctgc tttgtactga ccaaatttca aattagccaa
     1321 tgtctttgct cctatagcat taaatgcctt aacaacttta gcgccttggg ccaatttcgc
     1381 aatctcttcg gcggcagaag tcgaaggtcc aactatcaaa tcttttaaat cagaactcag
     1441 gggattactg ggatctatca aaatccttcc agataaatct cctgcatttt cgatcgtttc
     1501 tttgacggct tcccatggta cggcgaggag tactacctga ccgaacgaag ccgcctcact
     1561 aatggtagca accttgatat ttgaatctgc aattttgagt aaactcttga ctttaggact
     1621 ctgaatgttt cgaactccga acacaatttc gtggcctctc ttagcccatt ctttgcctaa
     1681 agtactgcct acatctccag ccccaatgat tcctatcttc atgttcttaa attgatgctc
     1741 tcacatattt tagttgttat ctgtaacttt ttacaaagag tggaaaccaa tcgggttaac
     1801 aaatcgttat ttatttgatc ctagacaagt caatttttga acgattcagt cagtcatgaa
     1861 gaaaactttc taagggagga aaacgtatta ttatcagata ataacatgga tatgtctgtt
     1921 tcatgcggta gttgtggcaa aaaaatacaa gactacccag tatactgtta catgtgtgat
     1981 gacgactttt gctcggacca gtgtcatatg aatcgtcaca acaaacaatg gcagaagttt
     2041 taattttgta gttttgtgta taagcaaatc aaagttagaa aatttacaaa attgccgcag
     2101 aatgtaaata ttgtatgaaa acaatttcag ttagagtact aatacatggg attgttagat
     2161 ctaatatccc gaattacagg tcaccatttt attcaccagt gactgagcct attgtgagaa
     2221 taaataaagt agtaatgatg taactagtct ccctctcttc aatggaactg tatcttgttg
     2281 tttattcctt catcaaaata agatttccaa gaacaattta gctaaagttc attcatagtt
     2341 catctattcc gaacgtatgg taacacatat tgcacttgaa tttctctttt cctgggttgc
     2401 cagataatac ttcaagttga ctcttagtcc tacattttgg acattttccg taaatagtct
     2461 tcttaggtat gacactactt tatgtagaca ttatttatac tgttagcatc atcaaagtga
     2521 acgacaatcc tagtaaaatc actatttgtc agacttccaa aacttattta atttcgagta
     2581 taaagggagt cccgcattgg caaagaatat tgaaaaacag gacgagagta gacccaaaga
     2641 caaattgtgg atttaaatcg tctatacagg aagaattcaa taacaaactt gaaggaccca
     2701 ttcaaaccac tcatattctg ttacaagaat aagtaaaaca actattccta atcatgtaat
     2761 atctataagt acatcttggt ccatctctta gtagtcaaat aaatcaattt ccgtttgagt
     2821 cgctttgctg ttgtaaatta aatgggttct attatcgatc tcagaactta cactatactt
     2881 gctttgcagt attcttataa ataatcatag tgtttcttaa tcattataaa tattcatgta
     2941 ttagctgaat agctgtcgag ccttcgccca ctcctgcagc gatccttttg atagaaccat
     3001 gacgtacatc tccagctgca aatataccag gaataatagt ttcaagtaaa aacggttgcc
     3061 gatatgcaag tccaattcaa ttggtcattt attgactaaa aaacgtaatt gcttgaaagg
     3121 ttatttgctc tcttgcacct ctggggtgcc agtttgtttt tcgagtggat ccaccttaat
     3181 tggtttgcta aaatcaaaat tatgccttcc atcctcctga gagggactag gacatggagt
     3241 attattttcg acataattta accattttgt actgcataaa cgacatttga aatcatgcgt
     3301 ctccattatg ttgtacctca ttttcgatct actttgtaat agattatcta tgctataacg
     3361 tctcaattaa atctatggtg atagggttga ttgttagatt cagatacgaa ttaccatgaa
     3421 tgcaagtccg ccgccacgtt agttattata atcatcttcg tggccttatt gtttttttcc
     3481 aaaatctgcc atagattttc ttgaagtctc gatggctttt tttcgtctcg gttgtatcac
     3541 aagaatgtat aatgatccta caacatatac acatagtagt attaattgtg cgataacagt
     3601 ctctagcgtt ggatgaattc cagtcatctt tgctagatta atatcgagcc tcgggataat
     3661 tccaatcaaa tgtgtagtag aaatgtatcc aacctcctga aaagacctta cagcatttcc
     3721 aataaatgct attgacatgt atgctccaac acccatagtt aatccaaata gaactctgag
     3781 aggtaatttc ttacctatct tttttattag aaaaacaatt cctactatta ctgctagacc
     3841 tattagtaaa ccagctataa cataccattc catatacttg gcaaatgata gcatcgcctg
     3901 gtagaaaaga acagtttcaa aaccctctct ataaacggta aagaacgaaa gcatgataaa
     3961 aaccattata cttcctgttg tggtagcatg ccacactttc gctttgacaa attcaatcca
     4021 tttctttgtt tcaactttat tgagcaccca aaagctgacc caaaaaagta caactactgc
     4081 cgaaatgcca gctatagctt caattaactc tctactagct cccgatattt tgattatgta
     4141 ttctgcaata aaccacgtga gagcagttcc cccaactgca atcgcaatac cataataaac
     4201 atgttttttg aaacgatcat ttctagatgc ttcgagatag gtaagaatgg caccaataat
     4261 taatgctgac tctagacctt ccctgaatat tatagtaaat gacgttgaga atgctatagt
     4321 cggagcaata attccagttc ctgttacaag tctttcagac tcatcaagtc cctgccttat
     4381 ctcaattatt ttggcttgga cactttcata gggtaccttt gattggataa gatttcgcaa
     4441 ttgggcaaat ttaatctcca tatcaagcgt aaaatccggg tttattggcc gtagcggaac
     4501 ttcaatattc tcatagctgt caagataggc agaacgcgaa gatgataatg attcatcgta
     4561 ttttttttcc ttatactcct gtaacacatt ttccagcttt agcctaatct gatcaatgtt
     4621 atctcttacc actccctttg acgattcgtc tgtttggccc atcccttttc tttcaccagt
     4681 atagatccca aatccccggc ttaattcttg tatatccgca aatgtttttc ccttagtttc
     4741 attagttttt gctgtctgga tactgatatc gcttgtagca acggcatttg tccctttttg
     4801 actacccgtt gacgattgaa atgaacgtat ttctgcgttg tcctgtttct ccgttttact
     4861 agtgtgcgat gggggggagg acactgaatc ttctactgtc ctttctatcg aagagattaa
     4921 tcgtgatatt tctattttat ctaatttttt agtcatgaaa tcttgcagct gagcgaatga
     4981 taggttaatt tcagaatttc tgttctttga aacagaactt gctattttgt
//
LOCUS       DASSIK010000327         2033 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1167231, whole genome shotgun sequence.
ACCESSION   DASSIK010000327 DASSIK010000000
VERSION     DASSIK010000327.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2033)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2033)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2033
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1167231"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            241..1488
                     /locus_tag="VFI64_06075"
     CDS             241..1488
                     /locus_tag="VFI64_06075"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase family glycosylhydrolase"
                     /protein_id="HET7242891.1"
                     /translation="MITLDFFFRESGITKFVLYAIVYFSVISLIFPLFGFSLTPNIYG
                     QVKGHSPTSFKGIDMKGLYTSILHGKRSSTFFPDNYYNQSFKLITSAGMNHIRYVLYW
                     QAYENDPVSFMDELQSVASLADKWGLHVIYDNHQYHTSSWLDPVRGSGFPFSLFNDNA
                     SYPYGSGGAPTNSSASKWWTKWWNNAIIDNRGLNGWALQVEFLQNIIKTVENHSSTLG
                     YEILNEPQIHSVDQWEKIGKYNTFMANELRKMTNKTLVFDMAIPLQIHNLKISATSEN
                     MLKMLPQNYNNILFKISLYGIPTTGSYQEQKLNLLRGVSNQSGVPLYIGEWNDLSTEE
                     RNDVETQDVKELIEDVSDLNQTDANIMTKKLKEIGAWGWAFWNWNYLHDSTPDFNLIT
                     VSVNGDLKTTKYFEILKNAIANS"
BASE COUNT          673 a          356 c          377 g          627 t
ORIGIN      
        1 ttcaagcgag gagaaaaaga gaagattacg atctagcacg atattaccgt attggtaatt
       61 ctgtaaaata gttgttcata atctaatggt gtttgaaata gaatgactcc cctacaaaca
      121 tagcatgatt caattttaaa atgctcttgt cattggtaca ccgaattttt gataatttat
      181 gtactaattt tagttacgga gatcacatat atatcgttaa gaaacaagat gttctaaatc
      241 ttgattactt tagacttctt ttttcgcgaa tctggcataa caaagttcgt attgtatgcc
      301 attgtttatt ttagtgtcat ttctttaatt tttcctcttt ttggtttttc attaacacct
      361 aatatctatg gacaagtaaa agggcatagt ccaacatcgt tcaaaggcat tgatatgaaa
      421 gggctgtata ctagcattct ccatggcaaa cgatcttcca ccttctttcc ggataattat
      481 tacaatcaaa gcttcaaact aatcacaagt gcaggaatga atcatatccg ttatgtcctt
      541 tattggcaag cttatgaaaa tgatcctgtt tccttcatgg atgagcttca atcagtagcc
      601 tcacttgcag ataaatgggg actccatgtt atttacgaca accaccagta tcatacatcg
      661 agttggcttg atcctgtaag aggctctggc tttccgtttt cacttttcaa tgataacgct
      721 agttatcctt acggttcagg aggcgcacct actaattctt ctgcctccaa atggtggacg
      781 aagtggtgga acaacgcaat aattgacaat aggggtctta atgggtgggc tcttcaggta
      841 gaatttcttc aaaatatcat aaaaactgtt gaaaatcatt ctagtactct gggttatgaa
      901 atacttaatg agccccagat ccacagcgta gatcaatggg aaaaaatcgg gaaatataat
      961 acattcatgg ctaacgaact cagaaaaatg acgaacaaga cgctagtctt cgacatggca
     1021 attccattac aaattcataa tctgaaaata agtgcaacct cagaaaacat gctgaaaatg
     1081 ttacctcaaa actataataa catattattt aaaatttcgc tctatggaat accaactaca
     1141 ggtagttatc aggaacaaaa actcaactta cttcgaggag tttccaatca atccggagtc
     1201 ccattgtaca ttggagaatg gaatgatctt tcaactgagg agcgtaatga tgtcgagaca
     1261 caggatgtca aggagttaat tgaagatgtc agcgatttga accaaaccga tgcaaacata
     1321 atgactaaaa aattgaaaga aattggtgca tgggggtggg ctttttggaa ttggaattat
     1381 ttacatgatt cgacaccaga cttcaatcta ataaccgtga gtgtaaatgg tgatctcaaa
     1441 accactaagt attttgaaat tctgaagaat gctattgcaa actcatgata agtgattgat
     1501 ggaatagtct tgtagaacaa tccataaatt tatttctaaa gaacgtaagt taatgaattg
     1561 cctttcaaat aatgcagcta caatttgaaa aacgaatctc tcacttttgt tggagtagag
     1621 tagttctttt tagtaacgtt ttgaaggctg tttgcaggta agagtaggtg caataatatt
     1681 aatgatataa atagatcaca ctcaaagata ctcaatgcag cagactgcag tcagatccct
     1741 ctttggaaga taaacttcag tagcgaaaat gttagtcgag tcttagaatt ggaactaccc
     1801 agaatttatc atatctggag tgcctataac atacatgcat gaattactaa ttagcggtag
     1861 aagtaactat ttagcgtaga ttaaaatgag agtagagaaa ttactaaaaa tagagaagtc
     1921 tgcttcatgc ctagattgca gactccatgc atacctactg acgtttgctt gttagtagag
     1981 atacctcaga agagcctcca tttcactttt tgtccctgtc gtggtctcga tca
//
LOCUS       DASSIK010000328         4117 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1251018, whole genome shotgun sequence.
ACCESSION   DASSIK010000328 DASSIK010000000
VERSION     DASSIK010000328.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4117)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4117)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4117
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1251018"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..292)
                     /locus_tag="VFI64_06080"
     CDS             complement(<1..292)
                     /locus_tag="VFI64_06080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase domain-containing
                     protein"
                     /protein_id="HET7242892.1"
                     /translation="MEDGTAYEGMGFGFPKIVGGEVVFNTGMVGYSETLTDPSYKGQI
                     LCMTYPLIGNYGVPSWDDLDAFGLPRYFESERIQVNGLIVNELSTVASHWDCE"
     gene            complement(591..1076)
                     /locus_tag="VFI64_06085"
     CDS             complement(591..1076)
                     /locus_tag="VFI64_06085"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:NF002207.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit K"
                     /protein_id="HET7242893.1"
                     /translation="MVLKRSSTKLSKKSPSTSEKSPKKQPKQVEKTKKNLKQKTKPAE
                     KKKLQQDETIQLNKSTRPVDEVVVYPEIEFQIRELVADGNQVLIGPPRLTRFERARIT
                     GARSLQLSLGAPSLIAWTNEIRDTISLATAELDARILPISIRRVLPNGLYQDIPIDWM
                     K"
     gene            1717..2103
                     /locus_tag="VFI64_06090"
     CDS             1717..2103
                     /locus_tag="VFI64_06090"
                     /inference="COORDINATES: protein motif:HMM:NF016050.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclophilin-like family protein"
                     /protein_id="HET7242894.1"
                     /translation="MNLAGNSSVSRIPIIMEVVGNGKVKCELVRHLSPLTVSNILHSI
                     PITGRLHYLGTKLVYFETGLNMGAEKQRAVFNKGDIGYMTSNGSLCIVLQDLSGIMMN
                     PVGRVLDDLNPLVTLPAGQTLSIKRT"
     gene            2613..3923
                     /gene="purD"
                     /locus_tag="VFI64_06095"
     CDS             2613..3923
                     /gene="purD"
                     /locus_tag="VFI64_06095"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HET7242895.1"
                     /translation="MVDYRNILVVGGGGREHCLGWKLSKSPKVNKVFFAPGNGGTVMN
                     VPTSPDDLEKLSDFARDNSCFTIVGPEKALTLGIVDLFARKGLPIIGPNKKAARLESS
                     KVFAKQFMKKYNIPTASFSVFSNADEAKQFVTSLSEPPVIKVDGLAQGKGVIVCHDLP
                     EAIRTIDKILKYKEFGSQGTSIVIEKRLYGNEVSFIALCDGHSIVPLDSSQDHKNIWD
                     GDLGPNTGGMGAYSPAPIIDEQMNSNIMKTIMEPTLNALKKSGLSFKGFLYAGLMIER
                     STNVPYVLEFNVRLGDPECQSILTRMDSDLVEYLEAIAETRLASMSQIKWKKDPAVCV
                     VMTSKGYPGKYEEGKVVRGLNSSVGEGVYVFHSGTARDHQDRIITAGGRVLSVTALGT
                     DMETAIDRAYSTVRNIHWGDNEEYYRNDIGYKAVNSKNIQSEFQ"
     gene            complement(3895..>4117)
                     /locus_tag="VFI64_06100"
     CDS             complement(3895..>4117)
                     /locus_tag="VFI64_06100"
                     /inference="COORDINATES: protein motif:HMM:NF013934.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HET7242896.1"
                     /translation="KLDLLIIPGIAFDTRGYRLGYGFGYYDRYMAKKTYTSSVGVAHD
                     FQILDHNLPNLSYDQKLDFLVTETRTVYF"
BASE COUNT         1272 a          773 c          827 g         1245 t
ORIGIN      
        1 gttcacaatc ccagtgactg gcaacagttg agagttcatt aactataagg ccattcactt
       61 ggatcctctc tgactcaaag taccttggaa gaccaaacgc atccaaatca tcccaactcg
      121 gaacaccata attgcctatc agtggataag tcatacacaa aatctgacct ttgtatgatg
      181 ggtcagttaa agtttctgaa tatccaacca tgcccgtatt aaaaactact tccccaccta
      241 caatttttgg aaaaccaaaa cccatgcctt cgtaagcggt accatcttcc aacagaagtt
      301 gggatttgta ccctacatga gtcgcctgga tagtcggaat tttgaccctc tcaaaattga
      361 aaaagttcga aatttaagtc ttgctacgta ccaaacaatc atattaattg atgagatgtt
      421 ccacgtgtac acctcctgca tgaatatttc actcgaactt aacttttctc gagcctcgta
      481 acttacattg acactgaagt atgctcatcg gatgggcaaa aaattctagt ccagccccag
      541 acaaggttgt tggataaacg gccatttatg ttgtaagaaa actattcacg ttatttcatc
      601 cagtcaatgg gaatatcctg gtacaacccg ttgggcaaaa cgcgtcggat tgatataggt
      661 aatatcctgg catccaactc tgctgttgca agagagattg tgtctctaat ttcatttgtc
      721 caagcaatta aagatggtgc acctagtgag agttgtaatg accttgcacc agttattcta
      781 gccctttcaa atcgtgtcaa tctgggtgga ccaattaata cttgattacc atctgccact
      841 aattctcgta tttggaattc tatttctgga tatacaacta cttcgtctac aggtctcgta
      901 cttttgttaa gttgaatagt ttcatcttgt tgaagtttct tcttttctgc cggctttgtc
      961 ttttgtttta gattcttttt ggttttttcc acctgtttcg gttgcttctt gggtgacttt
     1021 tcactggtag aaggcgactt tttcgataac tttgtcgaag aacgctttaa aaccaagaac
     1081 aaatcaaaaa gcagttggat atctaattaa atgttgctat atctactaaa tcaaatacgg
     1141 cgcacaatgc tttaaccttt actcactaat ttaacgtcat gtacagttat aaagatttcc
     1201 tgctcatttg ccaggtctcc tgccgtaata atacatcttt atttatgcct aataaacaag
     1261 cacaactgat acctctggaa ttgtgagtag aaatcattag cgccttggtt tggggcggta
     1321 gttttagaat cagttgaacg tatactttaa atgggaacgc tagacattcc tgcaccttgt
     1381 actaatacta agtaaaaatc tttaaacaac aattatcttt ttattcgatc taaaaattta
     1441 ggcacaaaaa ggccttgctt attctcaagc ctgcttgtcg cctacctaat tgtccttgaa
     1501 tcagattttg tgattatcac ttctacctaa atggtgtctg aaatgtaatt gctcatgata
     1561 tagtttactt tcagacccaa tctgagtgat tattttagga atcacgcaaa aaggatcctg
     1621 aatctagtat tcgcaaagga gcaagaattg gtcgggattt tcaaaaatat cttggctacc
     1681 attaaattat atagtttgct gatgtgatta cttccgatga atttggctgg aaacagttca
     1741 gtctctagga taccaattat catggaagtc gtgggtaacg gaaaagtcaa gtgtgaattg
     1801 gtacgccatt tgtccccgtt aacagtttct aatatactgc actcaatacc tataaccggc
     1861 aggctacact accttgggac taaattggta tattttgaaa ctggcctaaa catgggggcc
     1921 gagaagcaaa gggccgtctt taacaaaggt gatatcggat atatgacgtc caacggctca
     1981 ctatgtatag tacttcaaga tttgtccgga atcatgatga atccagttgg tagagtcctt
     2041 gacgatctta atccactagt cacattaccc gccggtcaga cattgtcgat aaaaagaaca
     2101 tagatggggt ttaagcgagc atctttgcta tttcggggat ataataaatc gcatgaaatg
     2161 gatgcgaaac ttgaatacct tggatagatg gagacctctg taataaataa tttatgaaat
     2221 ataggtgatt tgcgatagat tcaggaccgt tgtacttaaa gtgtcattca tttttgccaa
     2281 gtggtagaat catatggacc atgattggta acaattacga gtactggctt gatccatatc
     2341 taaactactg tagctgtaac gattattatt ttagaactct ttcaggtaag ggattatgtt
     2401 atcatcttag ttttgctcac aaaaatgtaa tcaacaagaa ctttgaacaa atctacttcc
     2461 atgatgagga atatcttgat ttcatctcag caataatctc tgattgttat tcaaaactac
     2521 acaaataatc gaactgacag ttcgatcatt atcgaaaaga aagttgagaa taagttaagt
     2581 ttttgtaggg atcatccaat ttgatagtac aaatggttga ttaccggaat atactggttg
     2641 tcggaggagg tggacgagag cattgtctcg gttggaagct ctccaagagt cctaaggtaa
     2701 acaaagtgtt cttcgccccg ggaaatggcg gtacagtgat gaatgtgcca acatcccctg
     2761 atgatttaga aaagcttagt gattttgcga gggataactc gtgcttcacg attgttggcc
     2821 ctgaaaaagc tctgacacta ggtatagtag atttatttgc aagaaaaggg ttacctatta
     2881 taggaccaaa taaaaaagca gccagattag aatcaagtaa agtatttgca aaacaattta
     2941 tgaagaaata caatattcct acggcctctt tttctgtttt ctccaatgcc gatgaggcaa
     3001 aacaattcgt cacttccttg tcagaacctc ctgtgataaa agtggacggt ctagcacagg
     3061 gtaagggggt catagtttgt catgatctcc cagaagcaat tagaacaata gataaaatat
     3121 tgaaatacaa ggagtttgga agccagggta ccagtatagt gatagagaaa agattgtacg
     3181 gaaatgaagt ttcctttata gcactatgtg acggacattc aatagtccca ctggattcaa
     3241 gtcaggacca caagaatatc tgggatgggg atctcggacc aaatactgga ggcatggggg
     3301 catattcacc tgcacccatc atcgatgaac aaatgaattc caacatcatg aagacgatca
     3361 tggaacccac attaaacgcg ttaaagaaat caggtctgtc atttaaagga tttctatacg
     3421 ctggtctgat gatcgaacgt agtactaatg ttccatacgt actcgagttt aatgtaaggt
     3481 tgggtgatcc tgaatgtcaa tcaattttga caagaatgga ttcagatctc gtagaatatc
     3541 tggaagctat agccgaaacg agacttgctt ccatgtctca gataaagtgg aaaaaagacc
     3601 ctgctgtgtg tgtagttatg acgtcgaaag gttatccggg aaaatatgaa gaaggtaagg
     3661 tagttcgagg gttaaactcc tctgtgggag aaggtgttta cgtattccat tcaggtactg
     3721 ctagggatca tcaggatagg ataattacag ctggtgggcg agtgctctct gtcaccgctt
     3781 taggtactga tatggaaaca gcaatcgatc gggcctattc taccgtaaga aatatccatt
     3841 ggggagataa tgaggaatat tataggaatg atattggata caaagcagta aactctaaaa
     3901 atatacagtc cgagtttcag tgactaaaaa gtccaatttt tgatcataag ataaattagg
     3961 taaattgtgg tctagaatct gaaaatcatg agcaacccct acagaactgg tgtaagtctt
     4021 ttttgccata tatctgtcat aatatccgaa tccatatcct agtcggtatc cccgagtatc
     4081 aaaagcgatt cctggtatta ttaaaaggtc aagcttt
//
LOCUS       DASSIK010000329         2692 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1251074, whole genome shotgun sequence.
ACCESSION   DASSIK010000329 DASSIK010000000
VERSION     DASSIK010000329.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2692)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2692)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2692
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1251074"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            832..1887
                     /locus_tag="VFI64_06105"
     CDS             832..1887
                     /locus_tag="VFI64_06105"
                     /inference="COORDINATES: protein motif:HMM:NF005750.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008863 - formate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent formate dehydrogenase"
                     /protein_id="HET7242897.1"
                     /translation="MKILAILYPGGEIAKNNPGLLGCAENALGLRDFLEKQGHEFVVL
                     TDKEHKLDEHLSTTEILITTPFWPAYITKERISKAPMLRLILTAGVGSDHVDLQAAAQ
                     RGITVAEISGSNVVGVAEQIVMHILALVRNYMPAYKQVLDGRWDIAEIAAYSHDLEDK
                     VVGIIGTGRIGQRVCERLKAFDVKILYYNLPRLTTAEEFVFGIRYTPLQQLVEQSDVI
                     SITTPLTPETEGLFNHDLLFSMKKGSYLVNCARGKIVDTSALVEALEKGHLAGYAGDV
                     WFPQPAPKDHPWRHMPNHAMVPHYSGTTLEAQSRYADGVKRSLSRYMRGLPIETEFLI
                     VDNGKVVSPSYSYAFKT"
BASE COUNT          868 a          505 c          521 g          798 t
ORIGIN      
        1 agtttggcaa atccgcagcc agtttggcca agccttacta gttctatata ttttgaggta
       61 atgaacaaaa tataccctct cgttgcaata ccatccataa ctatgggaat tcttggggct
      121 atttttgctc ctagttttaa gcgaaatgga cagcaaatta gagtatgaat atatcatcaa
      181 tcgatacata ggcatattct gtgggtccta ccataggttc atacttttca ttgacccacc
      241 ctagttgccc cgtcttggat ccgttcttga gccagtggag actccaggac ccataaagta
      301 tatagattta ctagaatctc caaatgccgg tccgttttca aatgcggata ctattcttaa
      361 ttgacatctc tcttgacgat cgtatctcct taatttattt caaaagcaaa tgattatgtg
      421 aagaatatgt caaagcacat tagatagaat ggtactattt tctattttaa aatcaaaaac
      481 atatttttct ccttcaagac ttatcacaac cgaaacaaat ctacaaacgg gaatctaatg
      541 atttgataca gtcacgcata taaattacaa ttcgtatgat atttcaaata taagttgata
      601 agaacgttac tatttaaatg acacggctta attaaagata actcatcgat agtcatttta
      661 aagatatgga tcagtaattt gcgtgtaaag ctatcgatct aaagatagat tgcatttaca
      721 ttgatcgata atttgtagaa tagattggca atagtaatga atttatggaa aataatggtc
      781 tagcattaca ttctagaaag atttaactaa tctactcaga attgacttca tatgaaaatt
      841 ttagcgattc tttaccctgg cggagagata gcaaaaaaca acccaggctt gttaggttgt
      901 gcggagaacg cgttgggctt gagagatttt ctcgaaaaac agggccatga attcgttgta
      961 ttgactgaca aagagcataa gcttgatgaa catctatcta ccacagagat actgatcact
     1021 actccttttt ggcccgccta catcacaaag gagcgaatct cgaaggcacc catgctacga
     1081 ctcattctaa ctgcgggtgt cggttctgat cacgtcgatt tgcaagcagc ggcacaacga
     1141 ggtataactg tggctgagat ttctggaagc aacgtcgtag gtgtcgcaga gcagatagta
     1201 atgcatattt tggcacttgt gcgaaactat atgcccgcat acaaacaggt tcttgatggt
     1261 agatgggata ttgcagaaat tgccgcttac tctcatgatt tagaagacaa agttgttgga
     1321 attataggca caggtagaat tggacaacgg gtgtgcgaac gactgaaggc atttgacgtc
     1381 aaaattttat actacaacct ccctagactg acaactgcag aggaatttgt atttggtata
     1441 cgatatacac cattacaaca actagttgaa caatccgatg tcattagtat taccactcca
     1501 ttaacaccgg aaacggaagg cctttttaac catgacctac ttttcagcat gaaaaaggga
     1561 tcatatttag ttaattgtgc acgaggaaaa atcgttgata cctcagcctt ggtggaagca
     1621 ctggagaaag gtcatctagc aggctatgcg ggtgacgtgt ggtttcctca acctgcgcca
     1681 aaagatcatc cctggcggca tatgcctaat catgcgatgg tacctcatta ctccgggaca
     1741 actcttgaag cacaaagccg gtacgctgac ggagtgaaaa gaagtctttc tcgttacatg
     1801 agaggacttc ctatcgagac agagtttctt attgtggata atggcaaggt ggtgagtccc
     1861 agttacagtt atgccttcaa gacatgagcg agaaacgcct tcaggcccta tcgaacttaa
     1921 tgtaggacaa attcgtgttc tagttgacgt aaatattatt gtgatttgga aatcccggta
     1981 gtttacgatc ataatatttg ttataaaata gagtaattgt tagtggccaa taaccaaaat
     2041 atgtcttgaa gcaatttgcg ttgaattgta atattgccgt tatctgtcat ttcggactaa
     2101 tactttttcc catccaattg gaatatgccc tgttggatgg tcgtatgaat ttcataatag
     2161 cttctcaaat ggatctatat ggacatattc aattgataac acagacccta attattctaa
     2221 aatggtgaaa aactggttta gttgctatga gaaggaaata acgaatttca taatatgcgt
     2281 cagcacttct taacaagttt cttattcact attccaaaga atcataatta atgtacttaa
     2341 tttagtaaca tttagtaaca ttgtgcgtca aacatatttc acaaaaaata ttatcacaca
     2401 tttccagcat atccggcata aggctatggg gtaagaaaga aatgtacaga cgcagctatc
     2461 cgacgtagtg taacaaaaca ggacatcact attgcaaggt aggtaaaaag gaaaacgaat
     2521 tcaactcaag gtgggatgga tgattaatcc tcggactcat ccatctagtc atgttgtaag
     2581 ccatgaggca agagacctaa caattcgtac ctgcaaagac aaatatattt cgcaaatata
     2641 tgaaattcct cccttattct tgtctaatat atactcaaaa agaattatta cc
//
LOCUS       DASSIK010000330         2081 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_866214, whole genome shotgun sequence.
ACCESSION   DASSIK010000330 DASSIK010000000
VERSION     DASSIK010000330.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2081)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2081)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2081
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_866214"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..298)
                     /locus_tag="VFI64_06110"
     CDS             complement(<1..298)
                     /locus_tag="VFI64_06110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242898.1"
                     /translation="MNKGKYRSILFLSIPLILSAFTHLLNPLGFPSVHIDEAHYMRRA
                     MLVLDGSGPQESANSGYPRTYDHPYFGQLFLAGLLGAVGYPNSLHPTPDVQSIEM"
     gene            445..1014
                     /locus_tag="VFI64_06115"
     CDS             445..1014
                     /locus_tag="VFI64_06115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242899.1"
                     /translation="MMNKISLIVVLPMTALLAGVIFATFYHKYDTSRGLFEDRNLSIE
                     DLSGIAGNIVSLQKDSSGNVVSIVSGKWLLITPPDNLTAGNGKVEFESNLTMQKIDGK
                     LTNKVSLSNFKLKDSSVVDEVATLDGTSSLIKFGATIGGGNISSQNITIPLHIVISNS
                     RTIRISSDSNLFHQYFEVSPVYGNVPLRD"
     gene            1262..>2081
                     /locus_tag="VFI64_06120"
     CDS             1262..>2081
                     /locus_tag="VFI64_06120"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014425.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HET7242900.1"
                     /translation="MLVHKFSASLILIPLVLSAFTHLWNAAGFPELHPDESDYLRKSI
                     HYLKGLGPQETSNDPIAYRNYPYTHPYFGQLFLAGLLAAVGYPNSLHPTPDVQSIEML
                     HLVPRIMMGILAVADTFLIYKLSERRYNKNVALIASVLFAVMPMTWILRRIYLDTLLM
                     PLFLSSILFAIYIRGPKNNNVQQWPRININKNLLVLLSGIFLGLAIYTKIPAFTMIPV
                     VGYLVVSNSNSNRKKTLALWLIPVILIPMLWPAYAFSIGHGDLWLDWVLWQTGRH"
BASE COUNT          642 a          397 c          403 g          639 t
ORIGIN      
        1 gcatttctat agattggaca tctggtgtag ggtgtaacga atttggatat cccacagctc
       61 ctaataatcc agctaaaaac aattgtccaa agtatgggtg gtcgtaagtt cgtggatatc
      121 cactattggc agattcctga ggcccagaac cgtcaagtac caacattgcc ctccgcatat
      181 agtgtgcttc atcaatatgt actgaaggaa aacctaatgg attcaagaga tgggtgaacg
      241 ctgagagaat caacgggatt gacaaaaaca ggatactacg atatttgcct ttgttcactg
      301 ttagtacctc cgctgataag acaatttaaa gtaaggtatg acacaaactt tgttgatata
      361 atggtaaaag attatgattc caaggtgagc tttttataat ctcttacttt agtttagctt
      421 aaatagattt taaccttgga agaaatgatg aacaagatat cgcttattgt agtgttgcca
      481 atgactgcct tactagcagg agttatcttt gccacctttt accataaata tgatacaagc
      541 agaggattat tcgaagatcg caatttgtcc atagaagatc tcagcggtat tgcaggaaac
      601 atagtcagtc tgcaaaaaga tagcagcgga aacgtagtat ctattgtgtc tggaaaatgg
      661 ctgctcataa caccaccaga taatttaact gcaggaaacg gtaaggtcga gtttgaatct
      721 aatctcacga tgcaaaaaat cgatggtaaa ttaactaata aggtgtcttt gtccaatttt
      781 aagttaaaag actcgagtgt cgtagacgag gtagcaacac tcgatggaac atcatcttta
      841 atcaaatttg gtgctaccat cggtggggga aatatatcca gtcaaaatat aacaattcct
      901 ttacacatag tgatttccaa tagccgtaca atccgcatat ctagcgattc gaacttgttc
      961 catcagtact ttgaggtatc tcctgtttac gggaatgtcc cgttgaggga ttgaaatggg
     1021 agaatagaac ttgaacagtg tagtatacat acgtcctctg acgttttatg ttgataatct
     1081 cacattgtcc agcccagctc cgagatcaaa gagggcttca ttcattaaaa ttcgccagaa
     1141 ttgaagttaa gctatcatag tcgaagcaaa gtaagaatca tacttacgat tctacttaag
     1201 aattagcagt atctttaaat cttatgtgac ttccgatccg atatttagga tgccggatta
     1261 aatgctagta cataaattca gtgcttcgct tatcctcata cctttagtcc tatctgcttt
     1321 cacccatctt tggaatgctg caggttttcc agaattacac cctgatgaaa gtgattattt
     1381 gcgaaagtca atacattact tgaaaggttt aggccctcaa gaaacttcaa atgatccaat
     1441 tgcatatcgt aattatccct atacacatcc atactttgga caattgtttt tagctggatt
     1501 attagcagct gtgggatatc caaattcgtt acaccctaca ccagatgtcc aatctataga
     1561 aatgctccat ttggttccaa gaataatgat gggtattcta gctgtggccg ataccttctt
     1621 gatctataaa ttatctgaaa ggcgatataa caagaatgtg gccctaattg cgtctgttct
     1681 ttttgcggtt atgccgatga catggattct acgaagaata tatttggaca ctttactcat
     1741 gcccttattc ttatcttcaa ttctgtttgc aatttacatc agagggccaa aaaataacaa
     1801 tgtccaacag tggcctagga ttaacataaa caagaatctg ctagtattat tgtctggtat
     1861 tttcctgggt cttgcaatat ataccaagat tccagcgttc acaatgatac ccgttgtagg
     1921 atatcttgtg gtatcaaact caaactctaa tagaaaaaaa acccttgcat tatggcttat
     1981 tccagtcatt cttataccga tgctatggcc agcgtatgcg ttttcaatcg gtcatggaga
     2041 tctctggtta gactgggtac tgtggcaaac tggaagacat a
//
LOCUS       DASSIK010000331         2823 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1168000, whole genome shotgun sequence.
ACCESSION   DASSIK010000331 DASSIK010000000
VERSION     DASSIK010000331.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2823)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2823)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2823
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1168000"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..287)
                     /locus_tag="VFI64_06125"
     CDS             complement(<1..287)
                     /locus_tag="VFI64_06125"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HET7242901.1"
                     /translation="MEQSNTSPIVLLNGITCKFGDLVANDNVKFDLIKGEIHALLGEN
                     GAGKSTLMSVLYGLYKPVTGEILVKGNRVNLKSPLDAIELGIAMVHQHFLLT"
     gene            complement(388..1446)
                     /locus_tag="VFI64_06130"
     CDS             complement(388..1446)
                     /locus_tag="VFI64_06130"
                     /inference="COORDINATES: protein motif:HMM:NF014647.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMP family protein"
                     /protein_id="HET7242902.1"
                     /translation="MTRVDTKVISRILFALTVSVSLVAGISLANPAQVLMPSYAQEKK
                     PLKVALVTDALFSDGGWGASAYNASQVLKEKYGLQLTTQENIAIPDIEPTLRDAADAG
                     ADIIFAHGFEWGDPALKVAKDYPNTKFVVFTGLTNSTNVASIFPMQQEGSFLLGALAG
                     LMTKSNSLGCVGGKAYPNIINIFEGFKQGAKLVNPNVKITCVFIDDFQNPAKGKEAGL
                     SLISTGADFLIHVADLSGQGVIQAAHEKGVYALGVVADQNKLAPDTVLSSFVLDIEKA
                     FDESIKMVQNGNFSGQLYKPGLESVKGGPGPGIVYLASFHSLDSKVPADVKAKLVQLT
                     QDVIDKKILVPERHEATP"
     gene            1654..>2823
                     /locus_tag="VFI64_06135"
     CDS             1654..>2823
                     /locus_tag="VFI64_06135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242903.1"
                     /translation="MQSTGIFHVLVKSNYYRDSLNLLKISDIMKRHSSGIMEAVVIMG
                     TKTNKAVLVKLGFPSSKINQATESDLIVAIKAEDKGSIDSALIKLEELLHSDGSSDTS
                     TSFSANSTDLDSVLVSKSINANLALISIPGEYVKDLSLKLSNEGIHQQIFSDHVPLDD
                     ELIIKKYAAKKGVLVLGPGAGTSIINGKGIGFSNVLRPGPVGIIAAAGTGLQEVSSLL
                     DQCDIGVKYGLGVGANDPKEKIGGLMMLESLKVLEELPDIEIMAIVSKPPSLRVKNMI
                     IDYIVKHGKKKYVLAFIGAGHDGSLPNSISSKIVQVNTLASAVFAVASLTSNQQYKLS
                     LVRLHMKPEILQNAVAKEWRRLGKQQKYIRALYTGGTFAYETQVILNSVLKDLYSN"
BASE COUNT          835 a          587 c          587 g          814 t
ORIGIN      
        1 gtcaatagga aatgctgatg gaccatagct atccccaatt cgatggcatc caatggagat
       61 ttgagattga cgcggtttcc cttgactaga atctctccag ttacaggttt atacagacca
      121 tatagaacac tcatcaatgt agacttaccg gcgccatttt cgcctaaaag cgcatgtatt
      181 tcgcctttaa ttagatcaaa ctttacatta tcatttgcaa ctagatcacc aaacttacac
      241 gttatgccat tcaatagcac aatcggtgat gtgttgcttt gttccatagc cttacttctc
      301 taccgatgta gtacaattat tggaatcaag ccgagaggcg tatgccaaag caatatctaa
      361 tatgattgga gactcaaaag aaaaaaatta aggtgttgct tcatgccgct ctggaactag
      421 tatcttctta tctattacgt cctgagtcaa ctggaccaat tttgctttca cgtcggcggg
      481 gaccttactg tccaaactgt gaaatgatgc aaggtaaaca attccaggac cagggccacc
      541 cttgacactc tctagacctg gcttgtaaag ttgtccacta aagttcccat tttgaaccat
      601 cttaattgac tcatcgaatg ccttttcaat atcaagtacg aaagagctca gcacagtatc
      661 aggtgccaat ttgttctgat ctgctaccac acccaaggcg taaacgccct tttcatgtgc
      721 cgcttgaatt actccttgac cagaaagatc ggctacatgg attagaaagt cggcaccagt
      781 gcttattaga gataagccag cttctttccc tttggcagga ttttgaaagt catcaataaa
      841 cacgcatgtt atcttgacat tgggattaac caatttggcc ccttgcttga acccctcaaa
      901 gatgttgatt atgttaggat atgcctttcc cccaacgcag cccaaagaat tactctttgt
      961 catcaggcct gctaaggctc ctaacaaaaa tgaaccctct tgctgcattg gaaatatgga
     1021 tgctacatta gtcgagttgg tgagacccgt aaatacaacg aatttagtat ttggataatc
     1081 tttagccact ttcaatgcgg ggtcacccca ttcaaatcca tgagcaaaga taatgtcggc
     1141 gccggcgtct gcggcatccc ttagagtagg ttcgatgtcg ggtatggcga tgttttcctg
     1201 agtagtgagc tgtaatccgt atttttcttt cagaacctgt gatgcgttat acgctgaggc
     1261 tccccatcca ccatcgctga acaaggcatc tgttaccaat gcgaccttga gaggcttttt
     1321 ctcttgggca taactgggca tgagtacttg ggccggattt gctaaactaa tacctgcaac
     1381 caaacttact gaaactgtca gcgcgaagag tatacgcgaa atcactttcg tatcgactct
     1441 ggtcattatc ttatttcttt tatgccatcg tattatagtt tgtgggaact gattttcata
     1501 tttatgatat atcacaaaaa ataattcctt ggtcaggagc atttttcttt agcatttcgc
     1561 tggataaaga gaaactacct tagctacagc ttaatgggca tgtattctta aatatttgaa
     1621 ggtgttgcaa atacctaata ggagtaacga atattgcaaa gtactggtat ttttcacgta
     1681 ctggtaaagt caaattatta tagagattcg cttaatctgt tgaaaatctc tgatataatg
     1741 aaacggcaca gcagcggtat tatggaagca gttgtgatta tggggacaaa gaccaataaa
     1801 gcggtacttg taaaacttgg ttttccaagt tcaaaaatca accaagcaac cgagtctgat
     1861 ctgatcgtag ctattaaggc agaggacaag ggatctatcg attctgccct tataaagttg
     1921 gaagaattgc ttcattctga tggaagttcc gatacaagca cctcattttc tgcgaactca
     1981 actgacttgg attctgtact ggtctctaag tctattaacg ccaatttggc attaatctca
     2041 atcccaggcg aatatgtgaa agatctctca ctaaaactaa gcaacgaggg gatccaccag
     2101 caaattttca gtgaccatgt ccctcttgat gacgagttaa taataaaaaa gtatgcagcg
     2161 aaaaaagggg tcttggtctt aggtcccggc gccggaacct ctattataaa tgggaaaggg
     2221 ataggatttt caaatgtttt gcgcccaggc cctgtaggaa taattgcggc agcaggaact
     2281 ggtcttcaag aggtttctag cctcttagat caatgcgata ttggagtaaa atatggtctt
     2341 ggtgtgggag caaacgatcc taaagagaag ataggtgggt taatgatgtt ggaatcatta
     2401 aaggtgttgg aagaacttcc agatattgaa atcatggcaa tagtttccaa acctccatct
     2461 ctccgcgtca agaacatgat aatcgactac atagtaaaac atggtaagaa gaagtacgtg
     2521 ctagctttca taggtgcggg ccatgacggc tctctgccaa attcgatatc gtccaaaata
     2581 gttcaggtga atacacttgc ttctgcggta tttgcagttg caagtctgac tagcaatcaa
     2641 cagtataagc tatcattggt ccgccttcac atgaaacctg aaattctgca aaatgcagta
     2701 gcaaaagaat ggagaagact tggaaagcaa cagaagtata ttagggcctt atacacggga
     2761 ggaacatttg cctacgaaac gcaagtaatt ttgaatagtg tattaaagga cctctactct
     2821 aat
//
LOCUS       DASSIK010000332         2494 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_564495, whole genome shotgun sequence.
ACCESSION   DASSIK010000332 DASSIK010000000
VERSION     DASSIK010000332.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2494)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2494)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2494
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_564495"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(13..1077)
                     /locus_tag="VFI64_06140"
     CDS             complement(13..1077)
                     /locus_tag="VFI64_06140"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HET7242904.1"
                     /translation="MLPKENRAAVFNGPRSITMERLPLAQSNDGSAILKILSCAVCGY
                     DVRVYNEGHRKVHPPIILGHEICAETMHPISNLGNGNLISEGTRVAISPLVPCLKCYY
                     CASERYNLCNNLQEIGSSVNGGFAEYIKIPLNNIIIDGIVPIPDNITNEEAALIEPLA
                     CCLNAHLRFKSSHTDRSIIIGDGPIGLIHLQISKLYGMKTIVIGKIDYRMDQAKQLGA
                     DVVLLNSNIEDSVRSIMDSTNNIGANMIIVATSNPDALDLALRIASKDSIISLFAGMP
                     KTKILSLDPNWLHYNEISISGSFSSTPILMRKAISMVSESKINLKKIISYTYRLKNIE
                     DAFLATEKYSSFRSIIHPYE"
     gene            complement(1162..1581)
                     /locus_tag="VFI64_06145"
     CDS             complement(1162..1581)
                     /locus_tag="VFI64_06145"
                     /inference="COORDINATES: protein motif:HMM:NF014086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HET7242905.1"
                     /translation="MSGGDDPEIGGDDPEIRIIKARKMKQLREHAATLEKLKENSDSR
                     TSTKKTDREILLSYLYDRGDEVLKLAEAQYPSQTRIIVSKIAQLIREGDISNRISGGE
                     LLALFRYAGLLIRVNTSIKIEDHGKYISFSEKLKQEQ"
     gene            complement(1581..>2494)
                     /locus_tag="VFI64_06150"
     CDS             complement(1581..>2494)
                     /locus_tag="VFI64_06150"
                     /EC_number="6.5.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008452 - RNA ligase activity [Evidence
                     IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="RtcB family protein"
                     /protein_id="HET7242906.1"
                     /translation="PGSVSDTARKRGAPQLGTLGSGNHFLEIQKVDKIFDEIAAKKMG
                     IEGEGQIAILIHCGSRGFGHQVCSDYLRISEGVLRKKNIQLVDRELACVPNNSSEGES
                     YRKAMYSALNFAWCNRQMITHWTRKSFEKILGLTEGQLDMKLIYDVAHNIAKVERHKV
                     DGEGMRDLVIHRKGATRAFPAGREQIPEKYRDVGQPVIIPGSMGTASWVLLGNVRSLD
                     LSFGSTAHGAGRAMSRTAARKNYTVENVKQQLESKGIYIKSLSKDGVVEETPEAYKDV
                     DAVVEVSHRLGIATKVARFVPVGVIKG"
BASE COUNT          638 a          558 c          426 g          872 t
ORIGIN      
        1 tttatcgata ctctactcat aaggatgaat aattgatctg aagctcgagt atttttcggt
       61 ggcaaggaat gcgtcttcta tgttttttaa cctataagta tagctgatga tttttttcaa
      121 gtttatttta ctttcactaa ccatactaat tgcttttctc attagaatag gcgtggaact
      181 aaaacttcct gatatagata tttcattata gtgtaaccag ttaggatcca gcgaaagaat
      241 tttggttttt ggcatacctg caaataagct tataatagag tccttactgg ctattcttaa
      301 agcaagatct aaagcatctg gattactggt agcaactatg atcatatttg ctccgatatt
      361 gttggttgaa tccatgatac tacgcactga atcttctatg ttactgttca agagtactac
      421 gtccgcgcct agttgttttg cttgatccat tctatagtct attttaccta tcactatagt
      481 cttcatgcca tataatttgg aaatctgcaa gtgaatcaga cctatcggac cgtctcctat
      541 tattattgaa cgatcagtgt gggatgattt gaatcttaaa tgggcattta aacaacatgc
      601 taaaggttct attaaagcag cctcctcatt ggtgatatta tctggtatcg gaacaatacc
      661 gtcaattatg atattgttca aaggaatttt gatgtactct gcaaaacctc cattaacgct
      721 cgaaccaatc tcttgaagat tattacacag gttgtatcgt tcgctggcac agtagtaaca
      781 cttaagacaa ggaacaagtg gcgatatggc aacccgggtt ccctccgata ttaaattccc
      841 atttcctaga ttactaattg gatgcattgt ttcagcacaa atttcatgcc ctagtatgat
      901 tgggggatga actttacgat ggccttcgtt gtaaactctt acatcataac cgcataccgc
      961 acaagataat atttttagta ttgcacttcc atcgtttgac tgcgctaatg gaagtctttc
     1021 cattgtgata gatcttggtc cgttaaaaac tgctgctcta ttttctttcg gaagcatttt
     1081 tcaccggtag acattcttga atcttattat cgtttctctt cccttctagt aatcttgtaa
     1141 ctttggcata gagtaataac gttattgctc ctgcttcagt ttttctgaaa atgaaatata
     1201 tttgccatga tcttctatct tgatacttgt attaacccta ataagaagtc ctgcataacg
     1261 gaacaaagcc agcagttcac ctccagatat tcggtttgaa atatctcctt ctctaatcag
     1321 ttgggctatt ttacttacaa tgatcctagt ttgggatgga tattgtgctt ctgctaattt
     1381 caatacttcg tcacctcgat catagagata cgatagtaaa atttctctgt ctgttttttt
     1441 agtcgatgtc cgactgtcac tattttcctt cagtttctct aatgtggctg cgtgctcccg
     1501 taattgtttc atctttcttg ctttgataat ccgtatttca ggatcgtcgc ctcctatttc
     1561 aggatcgtcg cctccgctca ttatcccttg atcaccccga caggaacaaa acgtgctact
     1621 ttcgtagcga ttccgagacg atgagaaact tctactaccg cgtccacatc cttatacgcc
     1681 tcaggagtct cttctacgac tccatccttg cttaatgatt tgatatagat ccctttggac
     1741 tccagttgtt gtttaacatt ctcgacggtg taatttttcc tagctgccgt tctagacatt
     1801 gccctaccgg ctccatgtgc agttgaacca aaactcaagt caagtgaccg gacattacct
     1861 aataataccc agctcgcggt tcccattgat ccaggaataa ttactggttg tcctacatcc
     1921 ctgtattttt ctggaatttg ctctctgcct gcaggaaaag ctcttgttgc gccctttcta
     1981 tgtatcacaa ggtcgcgcat tccttctcca tctactttat gcctttcgac cttggcaatg
     2041 ttatgtgcga catcgtatat tagtttcata tcaagctgcc cttctgtcaa gcccaatatc
     2101 ttttcaaaag atttcctagt ccagtgagtg atcatttgtc tattacacca tgcaaagttc
     2161 aaagccgagt acatcgcttt tctataactt tctccttctg atgaattatt gggcacgcac
     2221 gcaagctctc tatcaacaag ctgtatattt tttttccgca atactccttc agaaatgcgc
     2281 aaataatcac tacatacttg atgtccaaat ccccgtgaac cacaatgaat taaaatggct
     2341 atttgtccct ctccttctat ccccattttc tttgccgcaa tttcgtcaaa tattttgtca
     2401 actttttgga tttctaggaa atggttgcca gatcccagcg ttcctagttg tggtgcacct
     2461 ctcttccttg ctgtatcgga gacagatcct ggat
//
LOCUS       DASSIK010000333         3330 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1168362, whole genome shotgun sequence.
ACCESSION   DASSIK010000333 DASSIK010000000
VERSION     DASSIK010000333.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3330)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3330)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3330
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1168362"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            668..2191
                     /locus_tag="VFI64_06155"
     CDS             668..2191
                     /locus_tag="VFI64_06155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HET7242907.1"
                     /translation="MVLEVKRPRPMWEILFSTHHTDIGLLYIITSIAFLMFGGGLALA
                     VRAELFLPGLQIFHDPSDFNRFFTVHGTTMLFLWAIPFAAGVGNYLIPIMVRYKDMAW
                     PKLNAVAYWMIPVGAALVWLGFSDTGWTAYPPYSILRAPGPAAEMWIFGLKILGISSI
                     LGSINFIVTILRCRHPDLSIMKMSLFAWSILSISFMTIVAVPTFAASLIMLYTDRLGI
                     SGFFNPALGGDPITYQHLFWFTFHPEVYIFLLPAVGMLYEMIPKFSRKPLFSYQSGVA
                     AFILLTTIGFASWAHHMFATGMSFTEKTVFMIGTLAAVPASAMHVFNWIATMWGGRIK
                     FAAPMMFGVGGIMLFFASGAGGVVNTALPLDFITHDSYWVVGHFHLILMGTVSLTFTG
                     FIYYLFPLITGRMYNEKAAKVHFALAFAGVTIVFMTQHILGLYGMPRRVYDYLPLPEY
                     IIMNQIATIAAWVAGWSYVIMLVNLIKNAGSGKEADMRDPFKIGEEYYDYARREPHH"
     gene            2208..2753
                     /locus_tag="VFI64_06160"
     CDS             2208..2753
                     /locus_tag="VFI64_06160"
                     /inference="COORDINATES: protein motif:HMM:NF012355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupredoxin domain-containing protein"
                     /protein_id="HET7242908.1"
                     /translation="MAQGIAIVVILTAVGAGILIPSWKQMATHPPAASLIQPEGPPEG
                     QTGIQTSIGTIEGISKPKPAESTGPAAGSNAPAASTGPPGTPLTILKGASVQGSPNFD
                     PDTLTVKKGDKITVTNKDNVPHTVTSGTGPTDPTSAKSFDTSIIEGGKSADITTEKLA
                     PGDFPFYCSVHPYMTGKLVVQ"
     gene            2869..>3330
                     /locus_tag="VFI64_06165"
     CDS             2869..>3330
                     /locus_tag="VFI64_06165"
                     /inference="COORDINATES: protein motif:HMM:NF014665.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0016653 - oxidoreductase activity, acting
                     on NAD(P)H, heme protein as acceptor [Evidence IEA];
                     GO_process: GO:0006784 - heme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="COX15/CtaA family protein"
                     /protein_id="HET7242909.1"
                     /translation="MFLKPLSFATLAVLFSLMFIGGYVSSSGVGLSCPNWPLCPAGLV
                     PMKAFVIEYIHRTVAASTGLLVLATMAFTLASKLTSRNVKIISVVAAALVLGQIVLGG
                     IVIVEKLHAVLVTVHLGMGLVLFAMVLIVARHVYQLDKLGVVKVDSAAGSID"
BASE COUNT          949 a          669 c          725 g          987 t
ORIGIN      
        1 caacagatcc aactagcgca aaatcttttg atacttctat aatagaagga ggcaaatcag
       61 ctgacattac aactgaaaag cttgctccag gagactttcc gttctactgc agtgttcatc
      121 catatatgac tggcaaacta gtcgtgcagt aatagtaaaa gcggcgctga tacaagagct
      181 tttctctgct taatatattc ctcaattagt tatggatatt ttgttttgtt aaaagactaa
      241 tcacaggtca tagagcagat tataattctg tccagcgatt ccatggtcaa atcttgttct
      301 tataattggt agcaataaag caaggcaaag atagacaagc gaattaggag accctaaaca
      361 attatggatc tcttgcaatt ccctttcttt gacaaaaggg atccatgcat aacaactaca
      421 atctagctca gtgacttaat aatttccaat aattattgca cgaagataac ctggggcaat
      481 acttgttagt tcaagcagcc tggattattt ccagaaaata ttcatattag ttttaaggat
      541 ttctaattga tggtgagaca atttgcataa gttaaacaac aaggatgccc accgtaagag
      601 catttgaaac aaaatgcttt tattgatatt atgttacagg taaatgcaat cggtaggtgg
      661 atgattggtg gtattagaag ttaagaggcc ccgaccaatg tgggagatac tcttctcaac
      721 acatcatact gatattggat tactatacat aattacttct attgcgtttc ttatgttcgg
      781 tggtggcctt gctcttgccg tgagagccga acttttcctt cctggtttac aaatatttca
      841 tgacccttct gattttaata gatttttcac agttcacgga acaacaatgc tatttttatg
      901 ggccattccc tttgcagctg gggtaggaaa ctatctaatt cctataatgg ttagatacaa
      961 ggatatggcg tggccaaagc tgaatgctgt tgcatattgg atgataccag tcggtgcagc
     1021 tttggtttgg ctgggatttt cagacacagg ctggactgcg tatcctccat actctatact
     1081 tagggcaccc ggtcctgcag cagaaatgtg gatttttggt ctgaaaattt taggcatttc
     1141 gtctattttg ggatcaatca attttatagt gaccatcctg aggtgcagac atcctgacct
     1201 ctcaataatg aagatgtctc tctttgcatg gtcgatactg tctatatcat ttatgacaat
     1261 cgtagctgtt ccaacatttg cggcgtcact cattatgctc tacacagaca ggcttggaat
     1321 atctggattc tttaatcccg cactaggagg cgatccaata acatatcagc acttgttctg
     1381 gttcacattc catcctgaag tatacatttt cctattgcca gcggtaggta tgctgtatga
     1441 aatgataccc aagttttcga ggaaaccact ctttagttat cagtcaggag tggcagcctt
     1501 tatactacta actactatag gattcgcgtc ttgggctcat catatgtttg ccacaggaat
     1561 gagctttaca gaaaagactg tatttatgat cggcactttg gcagctgttc cagcatccgc
     1621 tatgcatgtc ttcaattgga tagccacaat gtggggtggt aggatcaaat ttgcagctcc
     1681 catgatgttt ggagtaggtg gtataatgct attctttgcc tcaggtgcag gtggggtagt
     1741 taacaccgct ctgccgcttg actttataac ccatgacagt tattgggttg tcggacactt
     1801 ccatttgata ttgatgggga cagtatcctt gacatttact ggctttatct actatctctt
     1861 tccgttaata accggaagaa tgtataatga aaaagcagca aaggttcatt tcgccttagc
     1921 atttgctggg gttaccatcg tcttcatgac acaacatatt ttaggattat atggaatgcc
     1981 aagaagagta tacgactacc tgccattgcc ggaatatata atcatgaatc aaattgctac
     2041 aatcgcagca tgggtcgcag gttggtctta tgtcatcatg ctagttaatt taataaagaa
     2101 tgcgggaagt ggaaaggaag cagatatgag agatccattc aagattggag aggagtatta
     2161 tgactacgca cgacgagagc cccatcatta gaaccagttc aaggagaatg gcgcaaggta
     2221 tcgccattgt agtaatcctt actgcagtag gtgcaggaat tttaattccg tcgtggaaac
     2281 agatggcaac ccatcctccg gccgcttcgc ttattcaacc agaaggacct ccagagggac
     2341 aaacaggtat tcaaacgagc atcggcacaa ttgaaggaat ctccaagcct aaacctgcgg
     2401 aaagtacagg tccagcagca ggctctaatg cccctgcagc ttcaaccggt cctccaggaa
     2461 cgcctttaac gatattgaaa ggtgcatcag ttcagggtag tcctaacttt gatccggaca
     2521 ctttaacggt aaagaaaggt gacaagataa cagtgactaa caaagataac gtaccccata
     2581 ctgtcacgag cggaacagga ccaacagatc caactagcgc aaaatctttt gatacttcta
     2641 taatagaagg aggcaaatca gctgacatta caactgaaaa gcttgctcca ggagactttc
     2701 cgttctactg cagtgttcat ccgtatatga ctggcaaact agtcgtgcag tagcagtggc
     2761 agcattagca gctgttttca aagtaccact tgcagaatga cgggaatatt acctgcacaa
     2821 aaaacacggg caaacaaaat aagtatgtct tgacaaatag ttgatctaat gttcctaaag
     2881 cctctttctt ttgcaactct cgctgtcctt tttagcttga tgtttatcgg aggatacgtt
     2941 agctcttctg gtgtaggcct cagctgccca aattggccat tgtgccctgc gggtcttgtg
     3001 cctatgaagg catttgtgat tgaatatatt cacaggacgg tcgccgcaag tactggattg
     3061 ttggtccttg caaccatggc attcacacta gcttcaaaat taacttcaag aaatgtaaag
     3121 atcatatctg tagtcgccgc agcgctagtt ctgggacaaa ttgtattagg aggaattgtg
     3181 attgttgaaa aattacatgc ggttttggtc acggttcatc tcggcatggg gttagttttg
     3241 ttcgctatgg tattgatagt ggcaaggcac gtctatcagt tagataagtt gggagtagta
     3301 aaagtggata gtgctgctgg ttctattgac
//
LOCUS       DASSIK010000334         3772 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1469810, whole genome shotgun sequence.
ACCESSION   DASSIK010000334 DASSIK010000000
VERSION     DASSIK010000334.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3772)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3772)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3772
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1469810"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            160..1323
                     /locus_tag="VFI64_06170"
     CDS             160..1323
                     /locus_tag="VFI64_06170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242910.1"
                     /translation="MSAGSSSLPVTTIYGLSTEGYKLASSIALKGAKVSLVDDSAGMA
                     ISLKPDLARTYPDVNALIEDGPLLAVEPTDLAINNAAYIFFAPRIRKTGHDVKIDVAS
                     KFQDAIKHVKKNSSIIYTVPTGFGTNSENIALIEHITGMTIGKDIFYYYMPANTIPVS
                     NSDLHIGTYKARQDSQLAKLLSTNDLRKKINFVDIGSLEILHSIRILGHYSGMASILE
                     ICRYVREGQTTTEITTGSFNEIYLDDVASGLYDLRAIGASLGGSSPLMYLVNGTIKSI
                     EAYVKHLIDETRMMLKKRDLKASRTKVTIAWTMDQNEMRGDKLDLLSILEARLKDYIG
                     EVETQHGSFDFYPTEKTMMVIACSKADFNNIVKRNINSDLIVIRATPISQTLL"
     gene            1801..2175
                     /locus_tag="VFI64_06175"
     CDS             1801..2175
                     /locus_tag="VFI64_06175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S6e family ribosomal protein"
                     /protein_id="HET7242911.1"
                     /translation="MAIFKVIVSDKQGKSISRELKDKEAQPLLGSRIGDLVDSSILGM
                     SNGKFQVTGGSDKSGTPMRKDVHGGVKKYILLSKGTGMRSNREGIRKRKLIRGNIVTE
                     EIYQLNCLLVEGSMPETSAQQE"
     gene            2274..3539
                     /locus_tag="VFI64_06180"
     CDS             2274..3539
                     /locus_tag="VFI64_06180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2 subunit
                     gamma"
                     /protein_id="HET7242912.1"
                     /translation="MLHWKETLPDWYVKEYGYQPCVNIGTSGHVDHGKTTLVEAITGV
                     WTSGHSEELRRGITIKVGYADAAFYKCAQCPPPLCYSTQPECKNCGGVSELSRVVSFV
                     DSPGHESLMANMLSGAALMDGAILVTAANEKVPQPQTREHFLALQILGIKQIVLVQNK
                     VDLTTYQESIDNYMQIKDFVKGSSVQDAPVIPISAQHKLNMDALIGSIEETIKTPTRS
                     KGSDPMMHVLRSFDINKPGISLEQIKGGVLGGALIQGELNVGVEVEIRPGLWDEKKNK
                     YEPVRSKIATLGTGAGLVENVKPGGLVAIGTLLDPSYVKSDSLIGSVVGLPEKLPEDV
                     EDITVDYQLFETAVGTHEMIKVDPIKNKESLRLNIGTAATLGTVMYTKDKRVEIKLKR
                     PVCMLEKSRVAISRRIGDRWRLIGSGITA"
BASE COUNT         1228 a          652 c          819 g         1073 t
ORIGIN      
        1 cggcttaaag aaaagtacct gttttggtgt caaaatatca aaccagattc tcaaacgatc
       61 cttgttgaaa ttccggtata gaaaaaactt ttcttctacc cttattttac atagctttgg
      121 taataaataa cctatgatga atatggaggc ccatacgaat tgagtgctgg gtcatcatct
      181 ttgccagtca cgaccatcta tggcttgagt actgaaggat acaaacttgc atcatccatc
      241 gcacttaaag gcgcaaaagt ctccttggtt gatgattctg caggtatggc tatttcgctt
      301 aagccagacc tcgcaagaac gtacccagat gtcaatgcat taatagaaga cggacctcta
      361 cttgccgttg aaccaacaga tcttgcaata aacaacgcgg cttacatctt ttttgctccc
      421 agaataagaa aaacaggtca tgacgtaaag atagatgttg cttcgaaatt tcaggatgcg
      481 ataaaacatg taaaaaaaaa ttcttctatt atatacacag ttccaacagg atttggaact
      541 aacagcgaaa atatcgcatt aattgaacat ataactggga tgacaatagg aaaggatatc
      601 ttttattatt atatgccagc gaacactatc cctgtatcga attcagactt acatatcggt
      661 acttacaagg cccgccaaga ttcacagtta gcgaagcttt taagcacaaa tgacttaagg
      721 aaaaaaatca acttcgtcga tatcggttca ttagaaattt tgcattcgat tcgaatattg
      781 ggacattaca gtggaatggc aagtatacta gaaatatgtc gctacgttcg agaaggtcaa
      841 acaacgaccg agataacaac gggctctttt aatgagatat acttggatga tgtggccagt
      901 ggattatatg atttaagggc tataggtgcg tcattgggtg gatcgtcacc tctaatgtac
      961 cttgtgaatg gaacgataaa gagcatagag gcttacgtta agcacttgat agatgaaact
     1021 cgaatgatgc tgaagaaacg ggatctgaaa gccagtagaa ctaaggtgac tattgcctgg
     1081 acgatggacc aaaacgaaat gagaggagat aaactcgatt tattgtccat tcttgaagcc
     1141 agattaaagg actatattgg agaagtcgaa acgcagcatg gctcttttga tttttaccca
     1201 accgaaaaaa caatgatggt tattgcttgt tcaaaggcag attttaataa tatagtaaaa
     1261 agaaatatca attctgatct cattgtaatt agggcgactc ccatatcgca aaccttgtta
     1321 taggaattct gaaagaatat ttcatgaagg gttggaggtc gacccagcaa agtataaggt
     1381 taacttcccg atcaatacta catacgcagg agaataaaaa gaatgttaga agccaaatgt
     1441 cctaattgtt taagccgtgc tgaagtcgac gatgatttat catttgtcga gtgcaggaac
     1501 tgtgattacc atgatacata tgaaaattat attgagacca tgagagagaa ggctgaaaac
     1561 atgtctagtg attttcaatc aaactggtat caaagaaatt agaaataatc ccattttgtg
     1621 tcatgaaaaa gatgtgaatc atatcttcac gtacttgcac gcaaaccatt gtgtttcgca
     1681 gcgcgaggga cattggccgc ccttgattat ttaagccaat gggatgtttt tgtctcaatg
     1741 ctgcattaaa tttgatattg agaaaggtta attaaagctg tattattcgt tcaattagaa
     1801 atggcaatat ttaaggtaat agtttctgat aaacaaggta agagtattag cagagagttg
     1861 aaagacaaag aagcacagcc actacttggt tcgaggattg gcgaccttgt ggattcttca
     1921 attcttggaa tgtcaaatgg taagttccaa gtaaccggtg gaagtgacaa atccggtaca
     1981 cctatgagaa aggatgtaca cgggggtgtg aagaaataca tattgttgtc gaaagggact
     2041 ggcatgagaa gtaatcggga aggtattagg aaaaggaagt taattagggg aaatatagtt
     2101 acggaagaaa tatatcaact gaattgtttg cttgttgagg gtagtatgcc cgaaacttcc
     2161 gcacaacaag aatagcacac taggaattta cctctttact ctgccaatgt gataatgccc
     2221 gtaatttgta tattctggaa ttaggttaat atccccgaaa aattccacta tgaatgttgc
     2281 attggaaaga aactttacct gattggtatg tcaaggaata tggatatcaa ccatgtgtaa
     2341 acattggaac ctcagggcat gttgatcatg gaaaaactac tttggttgag gccattacag
     2401 gagtgtggac tagtggccac agtgaagaac tgaggagagg aattacgata aaggtaggtt
     2461 atgcggatgc agcgttctat aaatgtgctc aatgtcctcc gcctttatgc tattctactc
     2521 agccggagtg taagaattgt gggggagtat ctgaacttag cagagttgta agttttgtag
     2581 attcacctgg ccatgaaagt ctaatggcta atatgctttc tggcgcagct ctaatggatg
     2641 gggcgattct agttacagct gcaaatgaaa aggtgccaca acctcaaact agagaacact
     2701 tcttggcact tcaaattctt ggaattaaac aaatagtact agttcaaaac aaagttgact
     2761 tgaccaccta tcaagaatcc atagacaatt acatgcagat caaggatttt gtcaaaggta
     2821 gttctgtaca agatgcgcct gttattccca tttctgccca acacaaattg aatatggatg
     2881 cactaattgg ttctatagaa gagaccatta aaacacctac acgctcgaaa ggctctgatc
     2941 ccatgatgca tgtgttacgc tcattcgaca tcaacaagcc aggaatatcc ttagaacaaa
     3001 tcaaaggagg tgttttgggt ggtgctttga tccaaggtga attgaatgtt ggagttgaag
     3061 tagagatcag acccggttta tgggatgaaa agaagaataa gtatgaaccc gtcagatcca
     3121 aaattgccac acttggaact ggggctggtc ttgttgagaa cgttaaacct gggggattag
     3181 tcgctatagg aaccctttta gatccatctt acgtaaagag cgattcctta attggttctg
     3241 tagtgggtct tccagaaaaa ctgcccgaag atgttgaaga tataactgta gactaccaac
     3301 tttttgagac agctgtagga actcatgaga tgataaaggt agatcctata aaaaataagg
     3361 agtcactgag attgaatatt ggtactgcag ctactcttgg aactgtaatg tacacaaaag
     3421 acaaaagagt tgaaataaaa ttgaaaaggc cagtatgcat gctagagaag agtagagtcg
     3481 caataagcag aagaatcggt gatagatggc ggcttatagg ttcaggtatt acagcctgaa
     3541 taattgcatt atcatggtat ttgaattctg ccctactcgt caggtccgtc caggcatata
     3601 ttctcttcaa gctttccaat aactgttgaa agattccttg tattatttgt tcaagattca
     3661 agtgctagca gtttaccatc taagactgct ttgacctggc ctgatccttt gtcgattagg
     3721 cctatttgtg tgcatttcat cttatttctt ttaaatatgt ctttagcatt tt
//
LOCUS       DASSIK010000335         3618 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1076664, whole genome shotgun sequence.
ACCESSION   DASSIK010000335 DASSIK010000000
VERSION     DASSIK010000335.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3618)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3618)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3618
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1076664"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..319)
                     /locus_tag="VFI64_06185"
     CDS             complement(<1..319)
                     /locus_tag="VFI64_06185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HET7242913.1"
                     /translation="MIHLSKIDDLDLKILSELSNDAAVSVPKLSKKININASVVYSRI
                     KRLVRRGFIKKFTIVINDEALGFSVKALTGINMDSKLRDNVLNELFKIPEVREISEVT
                     GRFD"
     gene            complement(396..1472)
                     /gene="asd"
                     /locus_tag="VFI64_06190"
     CDS             complement(396..1472)
                     /gene="asd"
                     /locus_tag="VFI64_06190"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004073 - aspartate-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HET7242914.1"
                     /translation="MLKVALVGATGAVGQEFVIALNRHPWFELDLIVSSERTAGKKYI
                     DALRDPNTAILRWHNKEEVPEFAKDMVLSNINELDPGKYDLIFAALESEDAKQIEPRL
                     AAHVPVISTAAAFRYENDVPILIPGINDDHTDMLEFQKKNRNWQGFIAPLPNCTTTGM
                     AITLKPIMDRFGVQRVFMTSMQAISGAGRSPGVVALDILDNIIPYIPKEEEKVQLETK
                     KILGGFSENVISPAGIKVSCTCTRVPVLDGHTEAVFVETREPVEPEIIKKLMLDYSES
                     VTTRNLPTAPKDYIIVHDDPTRPQPRIDREINDGMTTVVGRLRKDTAFNNGIKYVLLS
                     HNEKMGSAKGAVLLAELLRSKKII"
     gene            1489..2661
                     /locus_tag="VFI64_06195"
     CDS             1489..2661
                     /locus_tag="VFI64_06195"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HET7242915.1"
                     /translation="MNGTNNRLQEYDSSLKNLLGLNDSKYILLNTNLEQVTTGSCPHG
                     GIHSAGPHIVKIDFSSSVNPLGVSRSAVTKLKKCLGTLSCNYPDPECADFKENLIRYL
                     DGRISIDQINVGNGATEIIHNFARSFVKKAVIIPSPTFCEYELASRRVGAKAKFVPLS
                     DWEIDPDAILDSAKNIDAIFLCNPNNPTGILSNRSIYKILERSNDSTKILVDESFMEL
                     TDDPKAHLSLIDKVSEFPNMVILRSLTKSHGLAGLRLGYSISHPRTARQLSMHRIAWN
                     VNGLAQVAGVIALNDTQHLRRAKNLIRKERKFMFQEIQRRLKSFSTIRSDVNFYLIDL
                     HRGNSLKLRDYLLRWKGILVRDCSTFRGLRKNFIRVAIRNHHENVALLRSLESIDH"
     gene            2658..3524
                     /locus_tag="VFI64_06200"
     CDS             2658..3524
                     /locus_tag="VFI64_06200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobyric acid synthase"
                     /protein_id="HET7242916.1"
                     /translation="MTAKVLMIQGTSSGAGKSTLVIALCRIFSDMGYSVSPFKAQNMT
                     SNFYTISNTNKKLARIQAVQAFASRKAPDSRMNPILLEPLGDYWSNVFINGIYHARMR
                     ADDYYKDFVLKEGLSSVLKNLEELRQENDVILIEGAGSPAEINIAEYDIANMLLAEKI
                     SAPVILIADIERGGCFASIVGTLGLLKPQHCELVKGIVINKFRGDKLILDGAITTIER
                     MTKKEVLGILPRIEFTLPNEDSLDETKVQSPEVSPESLDEQVNILASKVKEIIDINSI
                     VSRVVGLEQKWM"
BASE COUNT         1089 a          706 c          722 g         1101 t
ORIGIN      
        1 tgtcaaatct cccagtgact tcggatattt ctctaacttc tggaatcttg aaaagttcgt
       61 tgagtacgtt gtctcgcaat tttgaatcca tatttatccc ggttagagcc ttgacactga
      121 aacctaaggc ttcgtcattg attacgattg tgaatttctt aatgaagcct cttcttacta
      181 accgcttgat tctactgtat acaacggatg cattgatatt gattttcttt gaaagctttg
      241 gtaccgacac cgctgcatcg tttgaaagct cgcttaagat ctttagatcc aaatcatcga
      301 ttttactcag atgaatcacc aattatatcg taaatttggg gattaataaa tgtattaatt
      361 tcaaatttga atcatttttt tataaatata tggcatcaaa tgattttttt ggagcgaaga
      421 agctcagcaa gcaaaacagc ccccttagcc gaacccattt tttcgttatg agacaaaagt
      481 acatatttta taccattatt aaacgcagta tcctttctta gtcgtcccac cactgtagtc
      541 atcccgtcat taatttccct gtctattctg ggctgcggtc tggttggatc atcgtggaca
      601 attatgtagt cttttggtgc cgtaggcaag ttccttgtcg ttaccgattc cgagtaatcc
      661 aacatcaact tttttattat ttcaggttcc actggctctc ttgtttctac aaatacagct
      721 tctgtatgtc catcgagtac agggactctc gtgcaggtac agctaacctt gatgcctgca
      781 ggcgaaatta cattttcgct aaatccacct agtatttttt ttgtctcgag ttggactttt
      841 tcttcttctt tgggaatgta tggtatgata ttgtccaata tgtccaatgc gaccacgcct
      901 ggtgacctgc ctgctccaga tatggcctgc atggatgtca taaacactct ttgaacacca
      961 aaccgatcca tgattggttt taaggttatt gccattcctg tggtagtgca atttggcaag
     1021 ggggcaatga aaccctgcca atttcgattt ttcttctgga attctagcat gtcagtatga
     1081 tcatcattta ttcctggaat caggatgggt acatcatttt catatctgaa tgccgcggca
     1141 gtacttatca cagggacatg tgcagctaac ctcggctcga tttgctttgc atcctcggat
     1201 tctaaagctg caaatatgag atcatatttt ccaggatcta gctcgttaat gttgcttaga
     1261 accatatcct tagcaaattc agggacttct tccttgttat gccacctaag tatggctgta
     1321 tttggatcac gtaatgcgtc aatgtatttc ttacccgcag ttctttctga agatacgatt
     1381 agatccaatt caaaccaagg atgtctattc agagcaatga caaattcttg accgactgct
     1441 ccagtagcac ctacgagggc aacttttagc atatagtgtg gcgttatttt gaatggaact
     1501 aataatcgtt tacaggaata tgactcgtcg ctaaagaatt tgttaggatt gaatgattct
     1561 aaatatatat tactaaatac caatcttgag caagtgacta caggctcttg ccctcatggt
     1621 gggatccact cagcaggacc acatattgtt aaaattgact ttagttccag cgttaatcca
     1681 ctgggagtgt caagaagcgc agtaactaaa ctcaagaaat gcttagggac actttcctgt
     1741 aattatccag accccgaatg cgcagacttt aaagagaatt tgattcgtta tctagacgga
     1801 aggatatcta ttgaccaaat taacgtagga aacggggcta ctgaaataat tcataatttc
     1861 gcaaggtctt tcgtcaagaa ggcggtgata ataccctcgc ccactttttg cgaatatgaa
     1921 ctcgcctcga gaagggtagg agccaaagca aagtttgtgc ctctttcaga ctgggaaatc
     1981 gatcctgatg ctatactaga cagtgcaaaa aacatagatg caattttttt atgcaatccc
     2041 aacaatccca caggcattct gtctaataga tctatttata aaatattgga aaggagtaac
     2101 gattcaacca aaattcttgt tgatgaaagc tttatggaat taactgatga tcctaaggca
     2161 catttgtcct taatcgacaa agttagtgaa tttccaaata tggtgatttt aagatcattg
     2221 acaaaatccc atggccttgc gggcctaaga cttggatata gcatttcaca tcctagaacc
     2281 gcgcgtcaat tgtctatgca tagaattgcc tggaatgtga acgggctagc acaagtggca
     2341 ggagttattg cattaaatga tacccaacac cttcgccggg caaagaatct cataagaaag
     2401 gaacgcaaat ttatgttcca agaaattcag agaaggttaa agtcattttc tacaatccgt
     2461 tccgatgtga acttttattt gatagatttg catcgaggta attcgttaaa actgagagat
     2521 tatctgctaa ggtggaaggg gatacttgtg agagattgca gtacgtttag gggacttcgc
     2581 aaaaatttca ttcgtgtagc aatcagaaat catcatgaaa atgttgcact ccttagatct
     2641 ttggagtcga tagatcattg actgcaaaag tacttatgat tcaaggaaca tcctcgggag
     2701 cagggaagag caccctcgtg attgcgttat gcagaatatt ctctgacatg ggatactcag
     2761 tatctccatt taaggctcag aatatgacat ctaattttta tacaatttct aacactaaca
     2821 aaaaactagc cagaatacaa gcggttcaag catttgcatc gaggaaggca ccagattcac
     2881 gaatgaatcc catattattg gaaccattgg gagactattg gagtaatgtc ttcataaacg
     2941 gcatatacca tgcaagaatg agggccgatg attattataa agactttgtt ctcaaagaag
     3001 gactttcgtc tgtgctgaag aatttggagg aactgcggca agaaaatgat gtcatcttga
     3061 tagagggagc aggatctcca gcagaaatca atattgctga atacgatata gcaaatatgt
     3121 tactagcaga aaaaatttcc gccccagtaa ttttgattgc agacatagaa cgcggcggtt
     3181 gttttgcaag cattgtagga acattagggt tactaaaacc tcagcactgc gaattagtaa
     3241 agggaatagt aataaacaag ttcagaggag ataaattaat tttagatggt gccatcacaa
     3301 caatcgaaag gatgacaaaa aaagaagtac tgggaatatt gccacgaata gaatttacgt
     3361 tacctaatga agactcattg gatgaaacta aggtacaatc tcccgaagta tctcctgaat
     3421 cacttgatga acaagtaaac attctggctt cgaaagtgaa agagattatc gacattaata
     3481 gcatagtctc tagggtagtc ggactagaac agaaatggat gtaatctata tacttttttc
     3541 tatatccacg ggggtcgcac ttagtttcag cttcggtgat ccaccaaaca actttcatcc
     3601 cgtatcatgg cttggtaa
//
LOCUS       DASSIK010000336         4868 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_566973, whole genome shotgun sequence.
ACCESSION   DASSIK010000336 DASSIK010000000
VERSION     DASSIK010000336.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4868)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4868)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4868
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_566973"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            887..1909
                     /gene="fen"
                     /locus_tag="VFI64_06205"
     CDS             887..1909
                     /gene="fen"
                     /locus_tag="VFI64_06205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flap endonuclease-1"
                     /protein_id="HET7242917.1"
                     /translation="MGLDLKPLITPSYIKLTDLSNRTIAVDAFNTIYQFLATIRGSTG
                     ELLTNSKGEVTSHLSGLFYRNINLLAENIKLVYVFDGKPSHLKFDEIERRQQVKQVAV
                     EKFEEALTEGRFDDARKYGQATSVLTDKMVMESKMLLSFLGVPTIQAPSEGEATAAYL
                     SNTDKAYTCASQDYDSILFGAKRLTRNLTISGKRKVPNKNAYIDVVPEMFYFEDIVAQ
                     THLTRAQLIDIGILIGTDFNPGGIPGIGPKTALKLIQRYAKLENIDNIKEELSKIPYD
                     QIRELFLRPEVADIQDIEFDPINYDKVTDLLCNRMDFSVERVNGALQKLKNSIDNRSQ
                     SLERWF"
     gene            complement(1929..3575)
                     /locus_tag="VFI64_06210"
     CDS             complement(1929..3575)
                     /locus_tag="VFI64_06210"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050797 - thymidylate synthase (FAD)
                     activity [Evidence IEA];
                     GO_process: GO:0006231 - dTMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HET7242918.1"
                     /translation="MLTDFPYHSVDNFSSIERSTLNQHFSNVDKAVFAIITPRQVDRG
                     ALMSRYSRSDKTMRRIFLDEFISNPTRGEEFYNKILNEYGDDSVAELGEAQIAIEWIS
                     NIAAKKIEDQRIGLSYLEKSSRYVTFDKKIHNKYKYYRDKNIINSKYADLYIEACNNA
                     FELYSKNIPILQKFISEIEPINDFTYYDSTSKLEKKFDFLTNLQDIKSAEKVYNNTIR
                     AKSLDILRGLLPAATLTNLGITGNGRAFEYLLTKLYSSSLNEVRNLGTALHEQLNFVI
                     PSFVKRANDKYGKSIQSYFQDTSNAISKLAKKHIRDIKYNMNTSVELVDYTNNLKAET
                     TVASAALYEHADGQSLFDIIQLIKHLPQKKRHKIIEMYTKFRRNRRHRPGRAYEMVEY
                     TFDMLTNFGMFRDLHRHRLLTTERQLLSTRHGYEVPAEIIDAGLEKDYRDCMYQCNET
                     YENIVKKMPYEAQYVVNFAYRYPYFMKINLREACYMIELRTTAQGHPDYRHACQEMYK
                     HIRNVHPFLAMGIRFVDLNQYNLGRFDSEKKAEKKKRKLV"
     gene            3720..4559
                     /locus_tag="VFI64_06215"
     CDS             3720..4559
                     /locus_tag="VFI64_06215"
                     /inference="COORDINATES: protein motif:HMM:NF037920.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CdvA-like protein"
                     /protein_id="HET7242919.1"
                     /translation="MSELKLEFVGKQVKDMYGTHIGKVVGLVTDIDGSIESIGVDCGS
                     VGLKQLPYEQLLIQGEYVIYIPRWRMDAQKLVRQKSLTLKRIKALQDLVANNDQMKSD
                     AEIVYLKYENRLRALEGEEHGVINTLKSRLEELDSQAASIKTVVFDAKLQYRSNDMTE
                     ETYQQVNMNANELLEHINLEKEEISNFLTRISQHTVDDIELTSELEVQNDKYDHTADT
                     NSNKYVSQEDNMDLENGRLLATNTADKDGPKEESAVAIGSDSDSEVNWLNEVIAKEIK
                     DDQ"
BASE COUNT         1622 a          746 c          886 g         1614 t
ORIGIN      
        1 ttgataccaa aatgaaccgt attaaaacag ttaatacata agtgttgatt gcaagttgaa
       61 catgtatggt attcttcatg tttgctgcat ttttcgcaca ttgtcatgag ttagaagcac
      121 cttgtacaag acattaggaa aagatcgtca tcttttaaga cattcattat attcaccaat
      181 ataggcgaag tctcatatat caattgcttt tttcagtatg tacggctaat taagttaagt
      241 gtcttattgc atcaattatt tactatcaga tactgaactg aaagatgcca aaatagaagc
      301 aaactacatc ttgtttaaac ggtttcatag tcattattga ctcacattag gtagcgataa
      361 gacagagtag gaaggaagtc tcaacttttg tttgttttaa ttcaaaatta gttaagttaa
      421 ggtacattaa ttttcggtat ctcatttaga acgtttcaat ctgacaaaaa taccaattct
      481 tgaaagcacg cttaagacta atattataat acctacaatt attaggacag aaccattaat
      541 tgtccaagat ggattgctat acataaacga atttgaggga cctatcatgg atttagattg
      601 tgcagaaaaa attatgccga atactatgat caatattcca acaagaacga taaacagttt
      661 caaatatgat gggatgttga gcaacttagg tatgtatatg ttatcggaaa cataagtgag
      721 ttatagtatc ttgattattt ctagaccttt ttaaggtcca tttcacaata ttctattaaa
      781 caatgtagct tgatatgaca tgatattgag ccagcctcat aatttagatt ctaggatgag
      841 ttctgagtgg gaaaaaggta aaaagtaata attattattt ataatcatgg gccttgatct
      901 aaagccgctt ataactccat cgtacataaa gttgacagat ttatcgaaca gaacaattgc
      961 agttgatgca tttaatacca tctatcagtt tcttgctact atcagaggtt ctacaggaga
     1021 gcttcttact aactctaagg gagaagtaac tagtcatttg agcggacttt tttatcgcaa
     1081 tataaacctc ttagctgaga atattaagct tgtatatgtc ttcgatggta aaccaagtca
     1141 tttgaaattc gatgaaatcg aaagaagaca gcaagtaaag caagttgcag ttgaaaaatt
     1201 tgaagaggcg ctaacagagg gacgatttga cgatgcccga aaatatggtc aagctacctc
     1261 agtactgaca gacaagatgg tgatggaatc taagatgctt ttatcttttc ttggggtccc
     1321 tacaattcaa gcaccttcag aaggtgaggc aacggctgca tatttatcca atacagataa
     1381 ggcatataca tgtgctagcc aagattatga ttcaatttta tttggcgcaa aaagacttac
     1441 taggaatctt acgataagcg gcaagagaaa ggtcccaaat aagaatgcat atatcgatgt
     1501 tgtaccggaa atgttttatt ttgaagatat tgttgcccag acacatctaa ctagagctca
     1561 acttatcgat attgggattt taatcggtac tgattttaat cctggaggta ttcctggaat
     1621 tggaccgaaa actgcactta aattgattca aaggtatgct aaactagaaa atatcgataa
     1681 cattaaagag gaattatcta aaatcccgta tgaccagata agagagctgt ttctaagacc
     1741 tgaagtagcg gatatccaag atatagaatt cgatccaatt aattatgata aagtgactga
     1801 tcttctatgc aatagaatgg atttttctgt ggagcgtgtt aatggggcgt tacagaagct
     1861 caaaaactct attgacaatc ggagccagtc attagaaaga tggttttaaa tagatagaat
     1921 gatgtattct agaccaactt tctttttttc ttctcagcct ttttctctga atcaaatcta
     1981 ccaaggttat actgattaag atccacaaac ctaataccca ttgctagaaa cggatgaaca
     2041 tttcgtatat gtttatacat ttcttgacaa gcatgacgat agtcgggatg cccttgtgca
     2101 gtggtacgta gttcaatcat ataacaagcc tcacgcaagt tgattttcat gaaatatgga
     2161 tatctgtagg cgaaattaac tacatattga gcttcatatg gcattttttt tacgatattc
     2221 tcataagtct cattacattg atacatgcaa tctctgtaat ctttttccag accggcatct
     2281 ataatctcag ccggaacttc ataaccatgt ctagtagata ggagttgtct ttctgtagta
     2341 agtaatctat gtcgatgtag atcacgaaac attccaaagt tggttaacat atcaaatgtg
     2401 tattctacca tttcatatgc tctgcctggt cgatgccgtc tgtttctacg aaatttggtg
     2461 tacatttcaa taattttatg tcgctttttt tgtggaagat gttttattag ttgtataata
     2521 tcaaatagag actgaccatc tgcatgttca taaagtgctg ctgatgctac tgttgtctca
     2581 gcttttaagt tattagtata atcgactaat tctactgaag tattcatgtt atatttaata
     2641 tctcgaatat gcttctttgc taatttagat atagcattac tggtatcttg aaaataagat
     2701 tggatagatt tgccatattt atcatttgct cgttttacaa atgatggtat tacgaaatta
     2761 agttgttcgt gtaatgctgt tcctaaattc ctaacttcat tcagcgaaga agaatataat
     2821 ttcgttaata aatattcaaa agctcttcca tttccagtaa ttcccaaatt tgtaagtgta
     2881 gccgcaggaa gtagtccacg aagaatatct agtgatttag ctcttatagt attattatag
     2941 actttctctg cagatttaat gtcttgcaga ttggtaagga aatcaaattt tttttcgagt
     3001 tttgatgttg agtcataata agtaaaatca tttatgggct ctatttcaga aataaatttc
     3061 tgtaatatag gaatattctt gctgtaaagt tcaaatgcat tattacatgc ttcaatatag
     3121 agatcagcgt actttgaatt aattatattt ttatctctat aatatttgta cttgttgtga
     3181 atttttttat caaaagtaac atagcgagaa gatttttcaa gatatgatag gccgattctt
     3241 tgatcttcga tttttttcgc agcgatattg gagatccatt ctatggcaat ttgtgcctca
     3301 cccaattctg cgactgagtc gtccccatat tcatttagta ttttattgta aaattcttct
     3361 cctcttgtcg gattacttat gaattcgtcc aagaatatac gtctcatagt tttatccgat
     3421 ctagagtatc ttgacattag cgctcctcta tctacttgtc ttggcgttat aattgcaaaa
     3481 acagctttat cgacgtttga aaaatgctga tttagagtgg atctttctat tgaagaaaag
     3541 ttatcaacac tatgatatgg aaagtcagtg agcatgatat attgaaatta gattggtgac
     3601 ctaatatgta ttagcaccaa gccaaactat atttgagata aatcgtagta aaacatctca
     3661 ccaaattatt tacaaaattt gacactgcca gcattatatt ttagctctaa actaatctca
     3721 tgagcgaatt aaagctcgaa tttgtcggca agcaggtgaa agatatgtat ggaacccata
     3781 taggaaaagt ggttggtcta gttaccgata tagatggttc tattgagtcg attggcgtag
     3841 actgtggttc cgtaggattg aagcaattgc cttatgaaca attattgata cagggtgaat
     3901 atgtaatata tataccaaga tggagaatgg atgcacagaa attagtacga caaaagagtt
     3961 taacattaaa acgaatcaaa gcgcttcaag atttggtggc aaataatgat caaatgaaaa
     4021 gtgatgctga gattgtctat ttaaaatatg agaataggct tcgagctttg gaaggagagg
     4081 agcatggagt tattaataca ttaaaatcta gactagagga attagattct caggcagcaa
     4141 gtattaaaac tgttgttttt gatgcaaagc tacaatatag aagtaacgat atgactgaag
     4201 aaacttatca acaagtaaac atgaatgcaa atgaattact agagcatatt aacttagaga
     4261 aagaggaaat aagtaacttc ttaacacgaa tttctcaaca tacagtggat gatatcgagc
     4321 tgacatctga actggaagta caaaatgata agtatgatca tactgctgac actaattcga
     4381 ataaatatgt aagccaagag gataatatgg acttggaaaa tggccgactg ttagcaacca
     4441 atactgcaga caaggatggt ccaaaagagg agtctgctgt ggccatcggt agtgatagtg
     4501 acagtgaagt taattggctc aatgaggtaa ttgcaaaaga aatcaaagac gatcagtaac
     4561 agatgttagt aagacgagca ttcttttttt gattttaata tgcttatcgg tttgtcagaa
     4621 taggaaatag tgcatatata atatcaacat acaaataaca agaattaaat tactactacc
     4681 taataataga aatgaaaaat aaaatagtaa atttttgttt gtttatttgt attacttttc
     4741 ttcttttgct gttgtttgaa gaagctcgcc tatttcatta tgcatcttaa ggaagtttat
     4801 gcctttctca gtagtcttat aagtctgtga cccctctaaa tattccagaa ggttgttttc
     4861 aataagta
//
LOCUS       DASSIK010000337         5694 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_567092, whole genome shotgun sequence.
ACCESSION   DASSIK010000337 DASSIK010000000
VERSION     DASSIK010000337.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5694)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5694)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5694
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_567092"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1101)
                     /locus_tag="VFI64_06220"
     CDS             complement(<1..1101)
                     /locus_tag="VFI64_06220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HET7242920.1"
                     /translation="MSFPSEPGVYLMKSKVGKIIYIGKAKNLKKRIFSYFGENQGTTE
                     WKTSRLLRNVFDIDFMVTDNEMEAFLLESNLIKQYRPVYNIELKDQQRYTYLKISDEV
                     FPRLLVTRRSREGKFRGPPGKIFGPFVQGSSRYLTVGFLRKIFKIRICNRLPKKPCLE
                     YFIKNCDAPCVGNVTQEEYMRNVTALSDILSEKRSIDNFMAELRSNMSRASMGLQYEK
                     AKEIRDTIIRLENLRSRQKMECVTRSASNEEFVGILLDVVRSKAHVMILRRHRGVIRD
                     RKKYEFDLVAENSLSTFLLQYYSGVPSIPHNIYVNDDPDSKITLEESLTRIASHRVEI
                     IRISKKSGPERIQIMNLIVRNLLTYVKRGSEPA"
     gene            complement(1295..4183)
                     /gene="uvrA"
                     /locus_tag="VFI64_06225"
     CDS             complement(1295..4183)
                     /gene="uvrA"
                     /locus_tag="VFI64_06225"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HET7242921.1"
                     /translation="MIDKIVIKGAREHNLKNINLEIPKNSLVVITGLSGSGKSTLAFD
                     TIYAEGQRRYVESLSAYARQFLEMMDKPDVDSIEGLSPAISIQQKTTSKNPRSTVGTV
                     TEIYDYLRLLYARIGIPHCYKCGKKITAQSADSITDSILKGSEGKTVMILAPVVEAKK
                     GTYEKLFFEIKQNGFARIMLDGEIISLDELTDEETNGIKTRYPRLNKQKKHTIEIIID
                     RLTPSGEERSRLFDAVQTALKTAKGILKVLADNQTIVYSQRNACTDCGLSLPDLEPRS
                     FSFNSPFGACRECNGLGIRVEFDPELVIPDRDKSILEGAIKPWTGHFATFRSSMLRDV
                     GKKFGFNLYQTIKSMTEKQLNVILYGTQENIQYHYKSKNSDSSWEYRNSFEGVIPNLA
                     RIYAQTESESKRRDMERFIRELSCELCKGRRLRPEVLAVKIGDKSIMEVCDFPIDSCY
                     QFFVNLELSDTERYIARNILKEIISRLEFLQNVGLNYLTLNRMASTLSGGESQRIRLA
                     TQIGSNLTGVLYVLDEPTIGLHQRDNSRLIQTLKKLRDLGNSLIVVEHDEEIIRNADW
                     IVDVGAGAGIHGGRVVVSGLLDEVVANKNSITGSFLRGEDRVYDEKKNTMRRSAKWWI
                     TIKKARENNLKSLDVSFPLGCLTTVSGVSGSGKSTLVNDILFKALSSHFYGSKERAGA
                     HDSITGLEQVDKVVGIDQSPIGRTPRSNAATYVNAFGPIREIFARTEKAKEMGYKPGR
                     FSFNVVGGRCDSCEGAGVKRIEMQFLADVFVTCEECKGKRYNSETLQVTFKSKSIADI
                     LDMTVEEGLRFFSSIPSIEKKLSTLNDVGLGYIKLGQPATTLSGGEAQRVKLASELSR
                     RDTGRTVYILDEPTTGLHFSDVKKLLLVLDKLVNVGNTVILIEHNLDVVGFSDWIIDL
                     GPEGGDNGGQIITAGTPEFVAKQTNSHTATYLKPKLGLAPTIKSGNWK"
     gene            complement(4210..>5694)
                     /locus_tag="VFI64_06230"
     CDS             complement(4210..>5694)
                     /locus_tag="VFI64_06230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-related protein"
                     /protein_id="HET7242922.1"
                     /translation="LIHDLVEARYERNDTTLTPGTFRVKGDVIDIIPSYAEDVIRVSL
                     LGDEVEDISIHEQITMKRKRNADSVKIFPAKHYIIDDSAREVALTSIEQELSDWLPHL
                     PGELERQRLASRTKYDLEMIKELGYCSGIENYSRHLDGRASGQPPYCLLDFFGDDFLL
                     VIDESHVTIPQLRGMYRGDYTRKKNLVDYGFRLPSAFDNRPLKFEEFEKYLKSVIFVS
                     ATPAGYELNLSSRVVEQLVRPTGLVDPAVEVRSTRNQILDLIAEIRKRSSKDQRVLVT
                     TLTKRMAEDLAEYLAKKDVKVRYMHSEIEGLERTELIRQLRRGDFDVLVGINLLREGL
                     DIPEVSLVAILDADKEGFLRNNTSLIQTFGRAARHIDGEVIMYADTFTRSMKEAITET
                     ERRKQKQMIYNQQHGITPRSIIKPIAAGAEGVGIHLEIKSMPRGDLVKLAVDIEMKMK
                     LFAEDLNFEKAIELRDRLSKIRAALDNDNDNDRQQVIPRTGKTG"
BASE COUNT         1468 a         1329 c         1030 g         1867 t
ORIGIN      
        1 ggcaggctca gatccccttt ttacgtatgt caacaaattt ctgactataa gattcattat
       61 ctgaattctt tctggcccac tcttcttgga tatacgaatt atttccactc tgtgagatgc
      121 tatccgtgtt aatgattctt cgagagtaat cttagaatca ggatcatcat tcacgtaaat
      181 attgtgtggg attgacggta caccagaata gtactgcaat aagaaagtcg aaagtgagtt
      241 ctcggcaact aagtcaaatt catatttttt ccgatctctt ataaccccgc gatgtcgtcg
      301 cagaatcatt acatgggcct tggatcgtac gacgtcaagt aatatgccta caaattcttc
      361 atttgaagca gatcttgtta cacattccat tttttgtcta gatctaaggt tttccagtct
      421 gataatggtg tcccttatct cttttgcttt ttcatactgg aggcccatcg aagctcggga
      481 catgttactt cgcaattccg ccataaaatt atctatgctc ctcttttcag aaagaatatc
      541 tgaaagcgcg gtaacgtttc tcatatattc ttcttgagta acattaccca cacaaggagc
      601 atcacaattc tttatgaaat attctagaca aggcttcttt ggaagcctgt tgcatattct
      661 aattttaaat attttcctca ggaatccgac ggtcaagtat ctagaacttc cctgtacaaa
      721 aggtccaaat atttttccag gagggcctct aaactttcct tctctacttc ttctggtgac
      781 cagaagtctt gggaatactt catcagaaat ctttagataa gtataccgct gctgatcctt
      841 tagctctata ttgtaaacag gtctgtattg ctttatcaag ttagattcca aaaggaaggc
      901 ctccatctcg ttgtctgtga ccatgaaatc tatatcaaag acatttcgta aaagacgcga
      961 tgtcttccat tcagttgtac cttggttttc gccaaaataa gagaatatgc gctttttaag
     1021 attttttgcc tttccgatat agataatttt tcccaccttg ctcttcatca agtagactcc
     1081 tggctcagac gggaagctca ttgatttttg tttaatggtt atggaatttt gttggtgtac
     1141 caatctcata tccccagagc ttctatccgt ccaaacatct catcaatcgt cctacaaata
     1201 aattaacgag ccaatctgcc ataatctcaa cttgataatt tgtccttggc aatgcaattg
     1261 agaagttttg cttccttgac acagttgcgt tattctactt ccagttccca cttttgatcg
     1321 taggagctaa tcccagcttt ggctttagat acgtggccgt atgactgttc gtttgtttag
     1381 caacaaactc gggtgtacct gcagttatta tctgtcctcc attatcgcct ccttctggtc
     1441 ctaggtctat tatccagtct gaaaaaccca ctacgtcaag attgtgttct attagtatga
     1501 ctgtgttacc cacatttact agtttgtcta agacaagtaa taacttcttg acatctgaaa
     1561 aatggagacc tgttgtaggt tcgtcaagta tgtagactgt tcttcctgta tcccttcggg
     1621 agagttctga ggccagttta accctctggg cttctccgcc tgatagcgtt gttgcaggct
     1681 gaccaagttt tatgtatcct aaaccaacat cgtttaaagt gctcaacttc ttttctattg
     1741 agggtatgct ggaaaagaac cgaagccctt cttctacagt catatcaagt atgtctgcga
     1801 tacttttgga cttaaatgtc acttgaagag tttcagagtt gtatcgtttt cctttgcact
     1861 cctcgcaggt tacaaataca tctgcaagaa actgcatttc tatcctcttg actcctgctc
     1921 cttcgcatga atcacatcgt ccacccacga cattaaagga gaatcttcca ggcttatacc
     1981 ccatctcttt agctttttca gtcctagcaa agatctctct tataggacca aaagcattca
     2041 cataggttgc cgcgttggat cggggtgtgc ggccaatagg tgactggtct atccctacta
     2101 ccttatccac ttgttcaagg cctgtaatgc tatcatgtgc tccagctctc tcctttgagc
     2161 catagaaatg gcttgacaga gccttaaaca atatatcatt taccaaagtg gatttgcctg
     2221 atcccgaaac gccactcacg gtggtaaggc aaccaagagg aaaactcacg tctagtgatt
     2281 tgagattatt ttctcgagcc ttctttatgg taatccacca ttttgcgctc cttctcatcg
     2341 tattcttctt ctcgtcatat accctgtcct cacctctcaa aaatgagcca gttatagaat
     2401 ttttattagc aactacttcg tctagcagtc cgcttaccac aaccctgcca ccgtgaattc
     2461 cagctccggc gcctacatct actatccaat cagcatttcg aatgatctct tcatcgtgtt
     2521 ctacaacgat caaactattt ccaagatccc gaagtttctt gagtgtttgt attagtctac
     2581 tattatccct ctggtgaaga cctattgtcg gttcgtcgag gacatagagt actcctgtaa
     2641 ggttagatcc tatttgggtt gccagacgaa ttctctgaga ctctcctcct gaaagcgttg
     2701 acgccattct gtttaatgtc agataattga gacctacatt ttgcaaaaac tcaagcctag
     2761 atattatctc cttaagtatg tttcttgcga tgtacctttc tgtatcggag agctcaagat
     2821 taacaaagaa ttgatagcag ctatcaatag ggaagtcaca cacttccata atcgacttgt
     2881 cacctatctt gacagccagc acctccggtc ggagccgtct acccttgcac agctcgcatg
     2941 aaagctctct gatgaatcgc tccatatctc ttctttttga ttctgattcg gtctgagcgt
     3001 aaatcctagc caaattaggt atcactccct caaaagaatt acgatactcc caagaagagt
     3061 cagaattttt ggacttgtag tgatattgaa tattctcttg tgtcccatac agaataacgt
     3121 ttaactgttt ttctgtcata gatttaattg tctggtaaag attaaatcca aatttctttc
     3181 ctacgtcacg cagcatagaa gatctgaaag tcgcaaagtg accagtccaa ggctttatcg
     3241 cgccttccaa gatgctcttg tctctatcag gaattactaa ttctgggtca aattccactc
     3301 ttatgccaag accgttgcac tctctacagg caccaaaggg cgagttaaac gaaaatgacc
     3361 taggttcaag gtcaggcaag ctcaatccac aatctgtgca agcgttcctc tgtgagtaaa
     3421 caatagtttg gttatcagca aggactttca gaataccctt ggcagtcttc agggcagtct
     3481 gcactgcatc aaacaaacgt gacctctctt ctccagaagg tgtcagcctg tctattatta
     3541 tttcaattgt atgcttcttt tgtttgttta atcttggata ccgagtctta atcccattcg
     3601 tttcctcgtc agtcaactca tcaaggctga ttatttctcc gtcaagcatg attctagcaa
     3661 atccattctg ttttatctca aaaaacaatt tttcataggt tcccttcttt gcctcaacaa
     3721 caggagccag tatcattact gtctttcctt cacttccctt gagtatggaa tctgttatag
     3781 agtccgcaga ctgcgccgta attttcttgc cgcatttgta acagtgaggt attcctatcc
     3841 ttgcatacag caatctcagg taatcgtaga tctctgtgac cgttcccaca gttgaacggg
     3901 gattcttact tgtggttttt tgttggattg atattgcagg agaaagtccc tcgatagaat
     3961 caacatctgg cttgtccatc atttccaaaa attggcgagc gtaagctgaa agagattcta
     4021 catagcgcct ttgtccctct gcatatatgg tatcgaaggc caaagttgat tttccagagc
     4081 cagaaagtcc agttataacg accagactgt tcttggggat ttccaagttt atgttcttga
     4141 gattatgttc tcttgcaccc tttattacga tcttgtctat caaatttctt taaacacctg
     4201 acccatcatt catcctgttt tccctgtccg gggtatgacc tgctggcgat cattatcatt
     4261 atcattgtca agtgccgctc gaatcttcga gagccggtct cttaattcta tggctttttc
     4321 aaaattgaga tcctctgcga ataacttcat tttcatttcg atatcgacag caagtttgac
     4381 aagatcgcct cttggcatag attttatctc caaatggata cctactcctt cggctcctgc
     4441 ggcaatgggc tttatgatac tccttggagt aatcccatgc tgttgattgt aaatcatctg
     4501 tttctgcttc cttctttctg tctcggtgat agcctctttc atagatcttg tgaaggtgtc
     4561 cgcatacatt ataacttcac catcaatgtg tcttgccgct cttccaaacg tttggatgag
     4621 gctagtatta ttgcgtagga atccttcctt gtccgcatca agtatggcaa caagtgaaac
     4681 ctctggaata tccagtccct ctctaagcaa atttatacca acaagaacat caaaatcacc
     4741 tcttctaagt tggcgtataa gctcggttct ttcaaggcct tctatttcgg aatgcatgta
     4801 tcttaccttc acatcttttt ttgctagata ctccgcaaga tcttctgcca ttcttttcgt
     4861 taaggttgtc accaagacac gttgatcttt tgaggaacgt ttccttattt cagcaataag
     4921 atctagtatc tggttccttg tagatctaac ttcaacagct gggtcaacaa gtccagttgg
     4981 gcgaaccagc tgttctacca cacgagaact caaatttaat tcgtaaccgg caggcgtggc
     5041 agaaacaaaa atcacagact ttaagtattt ttcaaactcc tcaaatttaa gtggtctatt
     5101 gtcaaatgcg ctgggcaggc gaaatccata atcaacaaga ttcttttttc gagtatagtc
     5161 tccacggtac atccctctta gctgcggtat agtaacatgt gattcatcaa ttactaggag
     5221 aaagtcgtca ccaaagaaat ctagcaagca gtatggcggc tgccctgatg ctcttccgtc
     5281 tagatgtctg gaataatttt ctatgccaga gcagtatcca agctccttta tcatttccaa
     5341 gtcatatttt gtgcgcgaag ctaacctctg tctttccagc tcccctggaa gatgcggaag
     5401 ccagtcagat aactcttgtt caattgatgt gagagcaact tccctggcag aatcatcaat
     5461 aatatagtgt ttggctggaa agatcttcac agagtctgca tttctttttc gtttcattgt
     5521 aatctgctcg tgtatcgaaa tgtcttctac ttcatctcca agcaaagaaa cccgaatcac
     5581 gtcttctgca tatgaaggta ttatgtcaat tacatcaccc tttaccctga atgttccggg
     5641 agtcaaggtc gtatcatttc tttcgtatct ggcctcgaca aggtcatgta tcaa
//
LOCUS       DASSIK010000338         4383 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_775822, whole genome shotgun sequence.
ACCESSION   DASSIK010000338 DASSIK010000000
VERSION     DASSIK010000338.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4383)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4383)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4383
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_775822"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..331)
                     /locus_tag="VFI64_06235"
     CDS             complement(<1..331)
                     /locus_tag="VFI64_06235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242923.1"
                     /translation="MPQTRFSEGNLIVLYANFKADDKKTDGIPEYLNERLKICTNVYG
                     RILKSKPDRLKTEILLVSSDASLGNEIKQLLCNSNYIDVSKITIVSDKSTLADALEFV
                     LKSIKERA"
     gene            complement(432..755)
                     /locus_tag="VFI64_06240"
     CDS             complement(432..755)
                     /locus_tag="VFI64_06240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242924.1"
                     /translation="MKPNNFAMRDWHLEHVEKVILRYIKGLSDDASSFEKRNFKKYSN
                     VASCSKQIEYDMKHGVTVEEVIAVLQKIRHDDSYSEFRQIQEAVQRLDDLERQLISPK
                     RVTRW"
     gene            complement(1137..2492)
                     /locus_tag="VFI64_06245"
     CDS             complement(1137..2492)
                     /locus_tag="VFI64_06245"
                     /EC_number="4.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiD family decarboxylase"
                     /protein_id="HET7242925.1"
                     /translation="MTRNKRSNEFSGLEEFLNLLHRSKEIVTIKKTVSPKYEIAAIVS
                     RLDKGKAVLFESIKNNKLRVTANILGTRKRIALAIGARSEDHIDERINVAVSRPITPK
                     SSQDVIWKKKARNLFDLPIVTHFEKDFGPYITSSLVFVQNQETESQNLSTHRLLRLND
                     TFMVIRMVEGRHLHKCYSYAKEHGEDLRVSIIIGAHPAISIASAYQASYGEDELGIAN
                     ALMGGRLLVTKAPLSGLQVPSRSEILMEGRILLDQAKSECMVEMLRTYDMKRIQPIFQ
                     LDRIYYRDQCIYHDILPGYGEHRLLMGIPIESRIHHAVKNVVPTTENVHLTDGGCNWL
                     HAVIQIKKRLEGEPKNAILAAFAAHPSLKMAIVVDDDIDPKDPIQVEYAIATRCQADR
                     DLIIVRNAKGSSLDPSSDQENLLTTKLGIDATVSKFKEKGRFEIARIPGLEKTKLSYY
                     L"
     gene            complement(2512..2862)
                     /locus_tag="VFI64_06250"
     CDS             complement(2512..2862)
                     /locus_tag="VFI64_06250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242926.1"
                     /translation="MTDTAVTHNCEETVVNSRTGRVFLVKYLDFQNGCVLSISEDLHR
                     LGSLYVSTAIANNVRTAKVIPSITDSLFLNAVSERVASMINGLAIVNFSSKNQLNNSD
                     MEDITAEILKFIKG"
     gene            complement(3370..4233)
                     /locus_tag="VFI64_06255"
     CDS             complement(3370..4233)
                     /locus_tag="VFI64_06255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242927.1"
                     /translation="MTRPKVIALSVILITSVLITSHYSILNPAHLRAVSFKRLSKLGR
                     FVSNYFLANRNCVFSLRRLGKFNKHLGIRDHDGIPLSILTFPKKVIVATVSGRDYYRI
                     VTMLKSFGLNFISMLPEEASLSDAKVIITTKSEAHIIKKESVIVYSEINTYPIVFKAR
                     ILKNMIGKFHDDILIIGVDPGHRIGIYILYLHDELERTVQSSTRDAIKLITILLKEIH
                     AKEKIVRIGDGHTSMAHCIASEIKTRFRNNVRVEIVDEFGTSRKSSSNRRGIRDESSA
                     KSIAMKKGYTL"
BASE COUNT         1257 a          887 c          775 g         1464 t
ORIGIN      
        1 tagctctttc ttttatactc tttaaaacaa actcgagggc atcagctaat gtagatttgt
       61 ctgaaacaat cgtaatcttt gatacgtcga tgtagttact gttgcataac aattgtttta
      121 tttcgtttcc cagacttgca tctgaagaaa caagaagtat ctcagttttg agcctatctg
      181 gctttgattt caaaattctc ccataaacgt ttgtacagat ttttagtctt tcatttagat
      241 attcgggtat cccatcagtc tttttatcat cggccttaaa attagcatat agcactatta
      301 agtttccttc agaaaatctt gtttggggca atttactaat caatccatca aatttaatcg
      361 attaaaaaga aatacggttg tattaaattt ccggtaatat aatacgataa tttctaatga
      421 catattgtga cctaccatcg agtgaccctc ttgggagata ttaactgtcg ttcaagatcg
      481 tcaagtcttt gtactgcttc ctgaatttgc ctgaattcag aataggaatc gtcatgtctt
      541 atcttctgca atactgcgat gacctcttct acagtaactc catgcttcat atcatattct
      601 atttgtttgg aacaactcgc gacgttacta tactttttaa aatttctttt ctcaaaggaa
      661 gaggcatcgt cagaaaggcc cttaatgtag cgaagaataa ccttttcaac gtgttcaaga
      721 tgccagtctc tcattgcaaa gttgttgggc ttcatccttg ctatcactgc ttatataacc
      781 gaaaatgata tttaagccat tagacactgg ttatcgagca cgtattggat atccatattc
      841 cgactactat tctaatatct gagacccagt aagaattgaa atcacaaatt acagacttat
      901 tattggtagg atactacatg tagaatagca gtctatcttg gatctagaat catattacgt
      961 aaaattacat tagcttggtc tgccaaaacc aaataacccc agctttagta taacttgacc
     1021 ttaaacaaaa ctacataatc gctcctaatg caacaataag aatttgatca cggttcagag
     1081 gaagtaggat ttaaggctaa ccagggttca gtattattaa cgactaatcc ctaaaatcac
     1141 aggtaataac ttaacttagt tttttccagt cctgggatcc tagcaatttc aaatctacct
     1201 ttctccttga atttgctgac tgttgcgtct attccaagct ttgtcgtgag caagttttct
     1261 tgatcacttg aaggatccag acttgaacct ttagcattgc gcacgattat caaatctcta
     1321 tcagcttgac atctagtcgc tattgcgtat tctacctgaa taggatcttt tggatcaatg
     1381 tcatcatcga ccacgatagc catcttgagc gatggatgtg cagcaaatgc cgctaaaata
     1441 gcattctttg gctctccttc aagtcttttc ttgatctgga tgactgcgtg gagccaattg
     1501 catccgccat ctgttaaatg tacattctcc gtggtaggaa caacgttttt taccgcatga
     1561 tggattctgg attcgatagg aatgcccatg agtaagcgat gctcaccgta accaggaagg
     1621 atatcgtggt aaatgcattg gtcacgataa tatattctgt ctagttgaaa aatcggttga
     1681 atgcgcttca tgtcgtaagt cctgagcatc tcaaccatgc attcggactt tgcttgatct
     1741 agaagtattc gtccttccat gaggatttcc gaccgacttg ggacctgcag acctgagagg
     1801 ggagccttag taactaagag tcgtccaccc atcagagcat tagcaattcc caactcatct
     1861 tcaccataag atgcttggta ggcagatgct atggatatgg ccggatgagc accgataatt
     1921 atcgaaacac gtaggtcttc tccatgttct tttgcgtagg aataacattt gtgaagatgt
     1981 cgtccttcaa ccattctgat caccataaaa gtatcgttta acctcaacaa tctatgagtg
     2041 gataaattct gagattctgt ttcttggttc tgaacaaaga ccaaagagga cgttatatac
     2101 ggaccaaaat ccttctcaaa atgggtaaca ataggcaaat caaagagatt cctggccttc
     2161 tttttccaaa tgacatcctg agaggatttt ggtgtaattg gcctcgaaac agctacattt
     2221 atcctttcat ctatatggtc ttcgcttcgg gcaccaattg caagggcaat tcttttgcga
     2281 gtccccaaaa tatttgcagt cacccttagt ttgttgttct ttattgattc aaacagcact
     2341 gctttcccct tgtccagcct actaactatt gctgcaattt catacttcgg acttactgtt
     2401 ttcttaatag tgacaatttc tttagaacgg tgtaataaat ttaggaattc ttctaatcct
     2461 gagaactcat tgcttcgttt gtttctagtc attttatctt ttaggatagt ttcatccctt
     2521 aatgaatttg agaatctcag ctgtaatgtc ttccatatct gaattattga gctgattctt
     2581 ggaactgaaa ttcactatgg cgagtccgtt tatcatcgat gccactcgtt cagaaacagc
     2641 atttaggaac aacgaatcgg taatactggg tatgactttg gcagtacgga cattgttggc
     2701 gatcgctgtc gacacatata agcttccaag tctgtgcaaa tcttcagata tcgataaaac
     2761 acaaccgttt tggaaatcta gatattttac taaaaaaacc ctgccggttc tagaatttac
     2821 tacagtttct tcgcaattat gggtaactgc tgtgtcagtc attagaatct gtgattttta
     2881 atgtactgcc attgaagtga tcatcttcaa gggctgttga tcttttcgtg ctcgcagctt
     2941 ggccttatat ttcaaattcc ttggcttcgt tctgagacga tatccgcaac aaggacacca
     3001 cagaccgtcc cattttataa atatctcgca tatctgacat ctcttttgac cactagcgta
     3061 tcttccatgc cccactggct tttgtgcttt atgccgagtg catattccct tacaactcat
     3121 ctcagaaatc tatatcctct ataatatatt atcatgttta ttatttaagg atattgcaaa
     3181 aattctatct ttgacaggtt agttatgtca atattagata taacgttgca atattgttat
     3241 ttgccagtct ggattctatt tttctcggtc acctgaatga tgaatattaa tatcttgatt
     3301 cataagtcaa gacacgtacc tatcatgact gtgaacaata attattctaa tcttaaatgg
     3361 ggaaattgat tataaggtat aacctttttt cattgcgata ctctttgcag aggactcgtc
     3421 tctaattcct cttctattgg agctactctt ccgcgacgta ccaaactcgt ccactatttc
     3481 aactctaaca ttgtttcgga atcgggtctt aatctcagag gcaatacaat gggccattga
     3541 agtgtgccca tctcctattc taacaatttt ttccttagca tgtatctctt ttaacaaaat
     3601 tgttattagt ttgatggcat cacgagttga actttgcacg gtccgttcaa gctcatcatg
     3661 aagatataat atgtaaatac caattctatg gccagggtca actcctatta tgagtatatc
     3721 atcatgaaac ttaccaatca tgtttttcaa gattcttgcc ttaaacacaa tggggtatgt
     3781 gttaatctct gaataaacaa tcacactctc cttttttatt atgtgtgctt cactcttagt
     3841 tgtaattatt acttttgcat ctgataaaga tgcttcctcg ggcagcatag agataaaatt
     3901 gagtccaaaa ctctttaaca tagttacaat cctgtagtaa tctctgccgc ttacagttgc
     3961 tactattacc ttcttaggaa aagtaagaat actcagggga attccatcat ggtcgcgtat
     4021 ccctagatgc ttattaaatt ttcctaatcg tctgagacta aaaacgcaat ttctatttgc
     4081 aagaaaataa ttactaacga aacggcccaa ttttgagagt cgtttaaagc ttactgctct
     4141 tagatgagca ggattcaata tcgaataatg cgaggttatt aggaccgaag taataagtat
     4201 aacggatagt gctattactt tgggacgagt caaacaaagg gaagagtact tgtagttgac
     4261 gatgaaattg atactgcacg aactttagga tgcatactgg aaacgtctgg gttcgaagtt
     4321 gacatattaa cggatctcaa tgaagcattg ggaggtttca agaccggata ttacgacctt
     4381 tcc
//
LOCUS       DASSIK010000339         2366 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1472622, whole genome shotgun sequence.
ACCESSION   DASSIK010000339 DASSIK010000000
VERSION     DASSIK010000339.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2366)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2366)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2366
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1472622"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            206..433
                     /locus_tag="VFI64_06260"
     CDS             206..433
                     /locus_tag="VFI64_06260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242928.1"
                     /translation="MYKPQSVFVLCDKCHWCVTWLDKTKMSAYDKCPQCTNSEMLSSF
                     PILPDESFSFDYSKKKGVELDFKRRKNKEHN"
     gene            complement(531..1526)
                     /locus_tag="VFI64_06265"
     CDS             complement(531..1526)
                     /locus_tag="VFI64_06265"
                     /inference="COORDINATES: protein motif:HMM:NF013543.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HET7242929.1"
                     /translation="MQNIEIAVAISAALFFDFVNGFHDSANSIATVVGTRVLRPLYAV
                     GIAAIANFAGPFIFGTAVAATVGKGIIQPSFSTVDVIFAGLIGAIIWDLVTWYFGLPS
                     SSSHALIGGLIGSGLVAGGTSALVAPGIEKTLTFLVVSPALGFSCAFGIALLVMYFFR
                     NQTSSHVNKLFGRLQICSSIFFSLTHGANDGQKTMGVITALLIAGGFLDSQSFVVPVE
                     VVLASAVAIALGTFFGGWRIVKTMAFKLTSLRPFQGFCAETGGGVILTSMAWLGIPVS
                     TTHAIAGAIMGVGATKRLSAVRWGIGKRIVYAWIITIPASAAVAALVLIIIKAIF"
     gene            complement(1536..2120)
                     /locus_tag="VFI64_06270"
     CDS             complement(1536..2120)
                     /locus_tag="VFI64_06270"
                     /inference="COORDINATES: protein motif:HMM:NF013982.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF47 family protein"
                     /protein_id="HET7242930.1"
                     /translation="MALLEGQVDNLVKATSVLAESISNYSTLKEKNSILKELEHEGDQ
                     FTHKVFTTIDKTFITPLDKEDISELTSTIDQVLDATYGTSDRLVLFKIQEPSRYMQEL
                     ANLLLTASQQIYKAVTELRKVKHQNLLDYCKGISSCEHEGDKVYRIAIAELFETQDAV
                     EIIKCKEVYETLEGALDRTRDVADVIEDIALKYR"
BASE COUNT          746 a          503 c          450 g          667 t
ORIGIN      
        1 ggtgataagc ataaatttaa aagcaccaat atccaaacat ggatctttat gcatagatcc
       61 acataaagaa taatgcaagt aaacctttta atggagctca aaacatgcgt cgtctctacc
      121 atcttgagga aatcaaccat cctgctggct caagagtcgt gaatcagcaa taggtaataa
      181 tacttcgaag gaaagaatac taacaatgta taagccgcag tcagtttttg tcctttgcga
      241 taagtgtcat tggtgtgtaa cgtggcttga taagaccaag atgtctgcat atgataaatg
      301 tcctcaatgt actaattcgg aaatgttatc tagttttccc atcttgccag atgaatcatt
      361 ttcatttgat tatagtaaga aaaaaggtgt agaattagat tttaaacgaa gaaaaaataa
      421 ggaacacaat tgacccatcc gtagttcaac tctgttataa gtagctaact tgaaaaaagc
      481 catatagaaa gcgatagcat caatttagag gccggaagaa gttaattgat ctaaaatatg
      541 gcctttatta ttatcagtac aagtgcggcc acagcagcac tcgcaggtat agtaataatc
      601 catgcatata caattctttt accaatcccc cacctgacag cagatagtct ttttgtagca
      661 ccaacaccca ttatagctcc agcaatcgca tgagtagtac taacaggaat gccgagccag
      721 gccatagatg tgagtatgac accccctcca gtttctgcac aaaagccttg gaacggacgt
      781 agacttgtta acttaaaggc cattgtcttg actattctcc aaccaccgaa gaatgtgcca
      841 agcgcaatcg ccacagccga agctaatacg acttctacag gaactacgaa agactgagaa
      901 tcaaggaatc cccctgcaat caacagggca gtgatgactc ccattgtctt ttgaccgtcg
      961 tttgcaccat gagtaaggga gaaaaagatt gaagaacaaa tttgaagacg gccaaaaagc
     1021 ttgttgacat gcgaagatgt ctggtttctg aaaaagtaca ttactagtaa tgcaattcca
     1081 aatgcacatg agaatcccaa agcaggtgac acaactaaaa aagtgagagt cttctcaatc
     1141 cctggggcga ctaaggctga agtgcctcct gctactaagc cagatcctat tagtcctcca
     1201 atcaatgcat gactactgga cgatggaaga ccaaaatacc aagttaccag atcccatatt
     1261 atagccccaa ttaatcctgc aaatattaca tctaccgtag aaaatgaggg ctgtattatt
     1321 ccttttccga cagtcgctgc tacggccgta ccgaaaataa aaggtccagc aaaattggca
     1381 atggctgcga tacccactgc atacagaggc ctgagtactc tggtcccaac aacggtagcg
     1441 atggagtttg ctgaatcatg aaaaccgtta acaaaatcaa aaaagagcgc tgctgatatg
     1501 gccacggcga tttcaatgtt ctgcaatttg aaacctcaac gatattttaa tgcaatatct
     1561 tcaataacat cggcaacatc tcttgtccta tctaatgcac cctctagcgt ttcataaact
     1621 tccttgcatt ttataatttc tacagcatct tgtgtctcaa atagttcagc aattgcgatg
     1681 cgatagactt tatctccctc gtgttcacag ctactaatcc ctttacaata atctagcaaa
     1741 ttctgatgct ttaccttacg caattcagta acggctttgt agatttgctg agacgcagtc
     1801 aatagtaaat tagcaagctc ctgcatgtaa cgagagggtt cctggatctt gaagagtacg
     1861 agtctatcag aagtaccgta cgtggcgtca agcacttgat caatggtact cgttaattct
     1921 gaaatgtctt ctttatccag aggtgtgatg aatgttttat ctattgttgt aaatacttta
     1981 tgagtaaact ggtcaccttc atgttccaac tcttttagta tagaattttt ttcttttagg
     2041 gtactatagt tgctgattga ctcagccaag accgatgtcg ctttcaccag attgtcaact
     2101 tgaccttcca gaagagccat aatttggtta tcatttgcac gcacccagga tagccagccg
     2161 cctgccacag gacatggttg taattattat tatagaaacc tttcctaaga ttgacaattt
     2221 taacaacctt gtcgaatatt ttaaagagat gcaggattat tccatatgtt aattgattgg
     2281 tgaatctcta cttgctggat ggacgattat tacataacgg cttgtttgat caccattcta
     2341 taccggggcc acagaatagg ctgttt
//
LOCUS       DASSIK010000340         3323 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1171250, whole genome shotgun sequence.
ACCESSION   DASSIK010000340 DASSIK010000000
VERSION     DASSIK010000340.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3323)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3323)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3323
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1171250"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..406)
                     /locus_tag="VFI64_06275"
     CDS             complement(<1..406)
                     /locus_tag="VFI64_06275"
                     /inference="COORDINATES: protein motif:HMM:NF012790.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HET7242931.1"
                     /translation="MDDAQRNDILSKQQFEELISRVGMRSDSELILYGDFNNWFAAFT
                     FWIFNYYGHKKLKIMNGEWKKWEAEGKEYSKSIPRPKNSSYHATPPNEGIRAYFSDVR
                     RELESTRDGTFKELGDLKKLYIEKGVTPDKNVI"
     gene            826..930
                     /locus_tag="VFI64_06280"
     tRNA            join(826..862,894..930)
                     /locus_tag="VFI64_06280"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:860..862,aa:Ala,seq:tgc)
     gene            1236..1526
                     /locus_tag="VFI64_06285"
     CDS             1236..1526
                     /locus_tag="VFI64_06285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242932.1"
                     /translation="MSIFIAATLLTGTLALISILGTQSAMADDNNSHNKLKIDQGANQ
                     ENDCKLNNELDKKGASANTFACANLAFNIVCLPESVCILPNEDTPLILSTPF"
     gene            1697..1999
                     /locus_tag="VFI64_06290"
     CDS             1697..1999
                     /locus_tag="VFI64_06290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242933.1"
                     /translation="MSLFGGTEGGNTNKKKYVNLTLSIKQTVLERAHHRCQGCSVKFN
                     GSNGPYFEHINGSRKDNRPANLRALCEKCFEPVKKKESRKGILGTVLNNFGLIFGK"
     gene            2522..2929
                     /locus_tag="VFI64_06295"
     CDS             2522..2929
                     /locus_tag="VFI64_06295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242934.1"
                     /translation="MNLYKQHKRIEDRPISNEDLLIPFEKWLVALSKMDLSKGNLILR
                     EFYAQGYFEAYDIVMTYAEKTNSEVVWFKEKRNCGYPESNINFLGLEHFCTYCNRKFS
                     NREPIPCLKENCLSHFCSDKCFQDHIHLRKHHQ"
     gene            complement(3129..>3323)
                     /locus_tag="VFI64_06300"
     CDS             complement(3129..>3323)
                     /locus_tag="VFI64_06300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242935.1"
                     /translation="DLYQPVSPSDFVAWKYWLESVFKSIGFKLRTIDGVPSHFSSQFL
                     DQFKADPERIKIVTLIMRKN"
BASE COUNT         1038 a          625 c          596 g         1064 t
ORIGIN      
        1 aaataacatt tttgtcaggt gtcacacctt tttcaatgta taatttcttt aaatctccaa
       61 gttccttgaa cgttccatct ctggtactct ctaactctct cctaacatct gaaaagtatg
      121 ctcttattcc ttcattcggt ggggttgcat gataacttga attcttaggg cgcggaattg
      181 atttggaata ctcttttcct tctgcctccc attttttcca ttcaccattc attatcttta
      241 atttcttgtg gccatagtaa ttgaaaatcc agaaggtaaa ggcagcaaac cagttattga
      301 agtcgccata aagtatcaac tcgctatcgg atctcatacc aactctagat atcaattctt
      361 caaattgctg cttactcaaa atatcatttc tctgtgcgtc atccatgtcc tttttccacc
      421 atactaaatt cgcatttggc agatgacctt cgtagtatgt tgtatgcggt ttcaggatcg
      481 tagtttactt cagggataac aacattttga ttgctaagat tttcctgaac ccatgaagta
      541 tcgcaaagcg aactaggtct atattaggat tctagcgtca ttcgctatcc atgagcattg
      601 tgtgctctta aaaggctttg tcagctacta cgtattgacg aaatttcact gtcgtacgat
      661 ggcacggcaa gatggatgat tacacatgta gaagaacgtc ccctgatacc agaaattctc
      721 tttacaagaa acaagagaca tattaatcat caacgttatc ttaaggaggt aagcttgcta
      781 attatgcaaa agcacttaaa ttatgatcta caagacctct accgagggcc ggtagtttag
      841 tctggtagaa tacctgcctt gcatgcaata gaaagaactt cattgcagag gagacgtagg
      901 tggtcgtggg ttcgaatccc acccggtcca ctccatacga ccattctgaa taaatcattt
      961 ttactgtacc gaaaaatggg tattgaattc attgagcgcc gcgtgtctaa gatcaattta
     1021 atcagtgtgt tctacttcca actaaacttg catagttttg atttttctgc tcaatttggg
     1081 agattgtaaa cctagttgat tcctctcatt tcttctagta aattaatcaa catataactt
     1141 ttgcaataat atcattctta tttgttacca cctagtgtaa agcactctaa atataacata
     1201 ttaaaaaaac aaagacaatg aaaaagatga attgcttgtc aatattcatt gctgcaacac
     1261 tactaacggg taccctggct ttgatttcaa tactgggaac acagtcagca atggcagatg
     1321 ataataatag ccataataaa ttaaaaatag atcaaggagc aaaccaggag aacgattgta
     1381 aactaaataa tgaactagac aagaagggtg ctagcgctaa cacttttgcc tgtgcgaatc
     1441 ttgcgttcaa catagtgtgc ttaccagaat ctgtttgtat cctaccaaac gaagatacac
     1501 cactaatact atctaccccc ttctagcttt cgaccttttt tattttatcc attttgtaat
     1561 ataatcgtaa gagacatcga caacttaaaa tatacttata ctaacacgtt agagaatcgg
     1621 tctggtcatt gtcaatatca acatatgaat gactattaca gtaagagtta agttggacat
     1681 agtgcgttat ggagtgatgt cattatttgg cggaacggag ggtgggaaca caaataagaa
     1741 gaagtatgtc aatttaactt taagtataaa acaaactgtg ttggaacgag cacatcatag
     1801 atgtcaggga tgttcggtta agtttaacgg aagtaatggg ccttactttg aacatatcaa
     1861 tggttctcgg aaggacaaca ggccagcaaa tcttcgagca ctctgtgaaa aatgctttga
     1921 accagttaaa aagaaggaga gtagaaaagg aatacttggc accgtgctaa ataatttcgg
     1981 attaattttt ggaaaatgag ataaagcacg caatattctt tttgctgttt gattcctttt
     2041 ttccatttca gatctttgta cttggaatgt atctgttcat tacctattaa caaatctcgg
     2101 attaactagc tagcgccatc gattctctca aattttagaa gtcaaaaata gtgaccggtg
     2161 atcctgggaa caaaagtgct caatctttgc gactccgtaa tttgaattac cttcaacatg
     2221 tggccagcca tctccttcaa aagtatggcc gcagtaggca caagttttct tcattcctaa
     2281 attggttcta caaagtaaca tataagccgc atgattgtga cattttatgt tacttttgag
     2341 gatattagtt tcgttatgat gacatatact actttctact gatgaacatg ctcaagtagc
     2401 gcggctctaa gagcatcctt gagctgctat tgtattgaat ttcgtttgag ggtatctcga
     2461 taacgaacac cctggaagcg aaactgatta ataaattgcc atgttattcc cattcatatt
     2521 attgaactta tataagcagc ataaaagaat agaagatcga ccaatttcta acgaagattt
     2581 gctaattcca tttgagaagt ggctggtcgc tttatctaaa atggatttaa gcaagggtaa
     2641 cttgatacta agggaatttt atgctcaggg atatttcgaa gcttatgata ttgtaatgac
     2701 ctatgcagaa aaaactaaca gtgaagtggt atggtttaag gagaagcgaa attgtggtta
     2761 tcctgaaagc aacatcaact tcctagggct ggagcatttt tgtacttact gtaacagaaa
     2821 gtttagtaat cgagagccta ttccttgtct gaaagaaaac tgcttgtcac atttctgttc
     2881 tgacaaatgt tttcaagatc atatccatct gcgtaagcac caccaataat ttagtggaat
     2941 tggattatct aatatcaaca gcttccgaat agtacttttt cactccacat agtgggagcc
     3001 atataactta gttcatctaa gacagactag tgttatcgtc ggtgaagtcc gcagcgaccc
     3061 aagattactt aaatatcttt caattataat cccatgttac gtctcctcac ttctcgagta
     3121 atttgttatt aattttttct cattatcaaa gtaacaattt ttattctttc gggatcagct
     3181 ttaaattgat ccaaaaattg cgaagaaaaa tgagatggta ctccatctat tgttcttaat
     3241 ttgaatccta tagatttgaa aactgattct aaccaatatt tccacgctac aaaatcagac
     3301 ggtgaaactg gttgatagag atc
//
LOCUS       DASSIK010000341         3265 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_776215, whole genome shotgun sequence.
ACCESSION   DASSIK010000341 DASSIK010000000
VERSION     DASSIK010000341.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3265)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3265)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3265
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_776215"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..243
                     /locus_tag="VFI64_06305"
     CDS             <1..243
                     /locus_tag="VFI64_06305"
                     /EC_number="3.5.4.29"
                     /inference="COORDINATES: protein motif:HMM:NF017017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003933 - GTP cyclohydrolase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase IIa"
                     /protein_id="HET7242936.1"
                     /translation="SMTFYLGGDNFMIVSDTIPSEEVRSIISNICEQLKVKLNCGIGI
                     AKTAREAAGAATGALDTIRKLRKEGIIHQVYEIRCL"
     gene            234..1517
                     /locus_tag="VFI64_06310"
     CDS             234..1517
                     /locus_tag="VFI64_06310"
                     /inference="COORDINATES: protein motif:HMM:NF005552.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HET7242937.1"
                     /translation="MSLIIKNISLLLENDLEFINCGYIVIRKDGLISHAGQGDFRNTN
                     KHDKVFDGEGLLACPGFVNAHTHIGDSIGKDIAIDIDLDLDQMIHPLHGLKKKILDNS
                     DRDHLITFIKSSVRAMLRRGIVAFADFREGGSEGIKLLNDALFDTPIKYVALGRPEYY
                     FTIHPSSNGEKVDRYPYKSPKETLSANFNKTSHKILEVCDGFGISGANENSDESLNQY
                     RKVAHEYRSKSRRNIIVAIHAAESEQTVTFSVSATGKSEVQRILLNLMPDFIVHMTNA
                     SDEDITRVAEQGVGIVVCPRSNGVLGVGFPRVAKMLRLGCHVGIGTDNVMINSPDMFR
                     EMDYLWKMSRTIDDEFLSARDVLKMATVNGGKILKIKSGSIAPNMSADMIFFKKDHID
                     LAPLHNPYAAIVHRADMDSIHNVMINGRLIDGEEF"
     gene            1518..2168
                     /locus_tag="VFI64_06315"
     CDS             1518..2168
                     /locus_tag="VFI64_06315"
                     /EC_number="1.1.1.302"
                     /inference="COORDINATES: protein motif:HMM:TIGR00227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone
                     5'-phosphate reductase"
                     /protein_id="HET7242938.1"
                     /translation="MHVILNAAMSVDGKIATRSGDSSISSIVDLKRVHRLRTTVDAIM
                     IGIQTVLTDDPMLDVRYAKTKKKNPARIIIDSTARISLHSRILKTANEIQTVVAVTNR
                     ASIAKIHKIESTGAQVLVTGEKIVNIRSVFRHLERLGFNRILVEGGGEINWSVLNLGM
                     IDEMIVMVSSIVIGGRDAKTLVEGKGISEISSTKKMKLSRVQRQTLNEVVLYYQLF"
     gene            complement(2156..2689)
                     /locus_tag="VFI64_06320"
     CDS             complement(2156..2689)
                     /locus_tag="VFI64_06320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription factor"
                     /protein_id="HET7242939.1"
                     /translation="MRPADNEDPFVKIAALIGGEEYYKVARALLNTEDATDEEIASAT
                     GMRINIIRKVLYDMFGKALITGIRVKDEKKGWFVYRWRAKRDQAENFIDNQKKKILDR
                     LQKRLEYEESSEFYHCGNNECPRIKFDTAVELFFKCPNCKGSLGMVDNSKVKDALRYK
                     IDEIMLEVTSKDQIQNN"
BASE COUNT         1067 a          570 c          657 g          971 t
ORIGIN      
        1 tccatgacat tctatttagg cggcgataac tttatgatcg tatcagatac aattccttca
       61 gaagaggtaa gatcaattat aagtaacatc tgtgaacaat tgaaagtgaa attgaattgt
      121 ggtatcggca tagcaaaaac cgctagggaa gcagctggtg cagcaacagg ggcattggat
      181 acaattcgca agctccgcaa agaaggcatt attcatcaag tttacgagat cagatgtctc
      241 tgattatcaa gaacataagt ctattactag agaatgatct cgaattcata aattgtggat
      301 atatagttat acgaaaagac ggtctaatta gccacgcagg acaaggtgat tttcgtaata
      361 caaacaagca tgataaggtg tttgacggag aaggattatt ggcatgtcca ggattcgtaa
      421 acgcccacac acatatcggt gattccattg gaaaggatat agctatagat attgatttgg
      481 atctggatca aatgattcat ccattacatg ggcttaagaa aaaaattttg gacaatagcg
      541 acagagacca ccttatcaca ttcattaaaa gcagtgttcg agcaatgttg aggagaggaa
      601 ttgttgcttt tgcagatttc agagaaggtg gaagtgaagg aatcaagttg ctaaatgatg
      661 ctttatttga tacaccgata aaatacgtag cgttaggtcg tcctgaatat tatttcacta
      721 tccacccatc gagtaatggg gaaaaggtgg ataggtatcc gtacaagagt ccgaaagaaa
      781 cgctgtccgc caattttaac aaaacgtctc ataaaatact ggaggtatgt gacggttttg
      841 gcatcagcgg tgctaatgaa aattcagacg agtccctgaa ccagtataga aaagtagctc
      901 atgagtatag atcgaaatcg agaagaaata tcatcgtggc aatccatgca gcagagtcag
      961 aacagactgt aacattttca gtttctgcta cggggaagag tgaggttcag agaattcttc
     1021 taaatctcat gcctgatttc attgtccata tgaccaatgc ttctgacgag gatattacca
     1081 gagtagctga gcaaggagtc gggatagtag tatgcccacg atcaaatggg gtattaggag
     1141 tgggctttcc tagagtcgca aaaatgttac gattaggatg tcatgttgga atcggaaccg
     1201 acaatgtcat gatcaattca ccagacatgt ttagagaaat ggattaccta tggaaaatgt
     1261 caagaacaat agatgatgaa tttctttctg caagagatgt attgaagatg gcaacagtaa
     1321 atggagggaa aatacttaag ataaaatcag gatcaatcgc cccaaatatg tctgctgaca
     1381 tgatcttttt caaaaaggat catattgatc ttgcgcctct gcacaatccg tatgcagcga
     1441 tagtacatag agcagacatg gattcaattc acaatgttat gattaatggc aggttaattg
     1501 atggagaaga attctaattg catgtaattc tcaacgcggc gatgtcagtg gatggaaaaa
     1561 tagctactag aagtggagat tcttccattt catctattgt tgatcttaag cgtgttcaca
     1621 gattacggac aacagtggat gcaattatga tcgggataca aactgtccta actgatgatc
     1681 cgatgttgga tgtcagatat gccaagacta aaaagaagaa tcctgcgaga ataataatag
     1741 attccactgc aagaatatcg cttcattcga gaattctgaa aactgctaac gaaatccaga
     1801 ccgttgtggc agtgacaaat agagcttcaa tcgcaaaaat ccacaagatc gaaagtactg
     1861 gcgcccaggt gcttgttaca ggagaaaaga tagtaaatat tcgcagtgta tttcgccatt
     1921 tggaaagatt gggttttaac cgaatactcg ttgaaggtgg tggggagatt aattggtcag
     1981 tactgaacct cggaatgatc gacgagatga ttgttatggt ttcgtcaatt gtgataggag
     2041 gaagagatgc aaaaacgctt gtagaaggca aaggtatttc ggagatatct agtacaaaga
     2101 aaatgaagct ttcaagagtt caaaggcaga cccttaacga agttgtcctt tactatcaat
     2161 tattttgaat ttggtccttt gaagttactt ctaacataat ctcatcaatt ttgtacctta
     2221 aagcatcctt aactttactg ttatccacca tacctagaga acccttgcaa ttcgggcatt
     2281 tgaagaataa ttccacagcc gtatcaaatt ttattcttgg acattcatta ttgccacagt
     2341 gataaaattc tgaggattct tcatattcca atcttttttg caatctatcg agaatcttct
     2401 ttttttgatt atcaataaag ttctcagctt gatccctttt tgccctccac cggtaaacga
     2461 accatccttt tttttcgtct ttgaccctaa taccggttat taatgcctta ccaaacatgt
     2521 catacaacac ctttcttatg atattaattc gcataccagt tgcgctggcg atttcctcgt
     2581 cagtcgcgtc ctctgtattt aataatgctc gcgccacttt gtagtattct tctccaccaa
     2641 tcaacgctgc aatcttgaca aaagggtctt cattatcagc aggtcgcatc catattaatg
     2701 ctatattttt ttggatatat agttaccgtc ataccctcga acatcaatgc caatttgcta
     2761 tgaattatct ggtagaatca aagggtctag tccaaactat gactgagtaa tacttcatat
     2821 aacatatttc acctgttacg aatagttctt tacagacaat gccaagagac tgcacctaaa
     2881 ttcgaatgac tcaagagatt tgagtgcgga tagatttcat ttttgagatt atacagcccg
     2941 ttgaaaaatt tcgtgaatat acccaatatt acctattctg ccaaaatgaa tcagattcat
     3001 ttgaaggtcg aaaaaccaat aattctaaaa actaatgtaa attgttatat gggaaagtta
     3061 gttcgaactt gggaagagtt tacaacctct ttcgttgcaa tttttagtta atatttaaaa
     3121 catcatctgt caagatatat tcaatttgct ttttctgaat attggatcgg attatttttt
     3181 ttttgaagaa tgaagagaca ataataaatc aaatatcgga taaaaaatca gtaagaatat
     3241 tggaaattat gaaagcattt ttgac
//
LOCUS       DASSIK010000342         2535 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_69744, whole genome shotgun sequence.
ACCESSION   DASSIK010000342 DASSIK010000000
VERSION     DASSIK010000342.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2535)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2535)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2535
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69744"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            181..570
                     /locus_tag="VFI64_06325"
     CDS             181..570
                     /locus_tag="VFI64_06325"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine-R-sulfoxide reductase"
                     /protein_id="HET7242940.1"
                     /translation="MNYNKLTPEEEMVIVEKATEAPFAGDYDNFYEDGIFICRRCNAP
                     IYSSKCKFDAGCGWPSFDDNFPDAVKRVPDPDGIRTEIECTNCGGHLGHEFLGENLTD
                     KNTRECVNSLSIRFIPKGKDLPETVHE"
     gene            563..1114
                     /gene="msrA"
                     /locus_tag="VFI64_06330"
     CDS             563..1114
                     /gene="msrA"
                     /locus_tag="VFI64_06330"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008113 - peptide-methionine (S)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_function: GO:0033744 -
                     L-methionine:thioredoxin-disulfide S-oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HET7242941.1"
                     /translation="MNNDSETATLANGCFWCSEAIFKRLKGVKSVTPGYSGGTIKNPS
                     YDQVCDGTTGHAESIQIVFDPSVIDFDKILNIFWHTHNPTTLNRQGNDVGTQYRSAIF
                     YHNEKQREIAEKSKKDLEKEGIYKDSIITEITPFKNFYTAENYHKDYYDKNKQATYCN
                     FVIDPKIHKLLKEYENDIKAEYA"
     gene            complement(1161..1706)
                     /locus_tag="VFI64_06335"
     CDS             complement(1161..1706)
                     /locus_tag="VFI64_06335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242942.1"
                     /translation="MTSSIILSPSSSQGLIMYAFAQEGQVRCTSGQLVRSPTECPATD
                     LCPPPPEPTTVAYCSPRESSVRSVPHLTNNSEQLVAIYTDKSVYKAGDIVNVTIINTG
                     TEPLTFPNAVLGLTIQNAQSHEKFSLMSAQVITVLDSGGTKSVKWDQKDSDGQQVGPG
                     NYTASISTGLLTANKTFSILQ"
     gene            1949..2221
                     /locus_tag="VFI64_06340"
     CDS             1949..2221
                     /locus_tag="VFI64_06340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242943.1"
                     /translation="MVFGIELKGFHRNDRCGDRGGWFGGLKAPAITPMNVGEEYHVKI
                     KDVNRQTNNGIDKIELFVNFVSNASPRERVMVRNVNFRTGDAGPKA"
     gene            2310..>2535
                     /locus_tag="VFI64_06345"
     CDS             2310..>2535
                     /locus_tag="VFI64_06345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242944.1"
                     /translation="MTCKGICLRHKAIKPIGVGRYAAGQKRCQMCSIFVKWEGFFCPC
                     CGYRLRTKPRNQRYKLKLAQIQSKNLQKINK"
BASE COUNT          879 a          420 c          530 g          706 t
ORIGIN      
        1 agattaaaaa gtatatcaac ttcaagctac ccgcgttgac ttcaagaaag ggtttataat
       61 attcaagagt gaatagtctc tagtgttacg aactattcat tgtaccatac ttctcagcta
      121 ctttataaaa aatgatgacg agctaccaga agcttcaata cgtctaaaga aggcattggt
      181 atgaattaca ataaactaac gccagaagag gaaatggtca ttgtcgaaaa agcaactgaa
      241 gctccttttg caggtgacta tgacaatttt tatgaagatg gaatatttat ttgtcggagg
      301 tgtaatgccc ctatttattc gtctaagtgt aaatttgatg ctggttgtgg atggccaagt
      361 ttcgatgata acttcccaga tgcagtaaag cgcgtacccg atcctgatgg aataaggaca
      421 gaaatagaat gtacaaattg tggaggtcac ctaggacatg aatttctcgg agaaaatttg
      481 acagataaaa acactcgcga gtgtgtcaat tccttatcta tacgatttat ccccaaggga
      541 aaggatttac ccgagacagt acatgaataa tgatagtgag acagcaacac tagcgaacgg
      601 gtgtttctgg tgtagtgaag cgatcttcaa aagactaaag ggtgtcaaat ctgtgacacc
      661 tggttactca ggaggaacaa taaaaaatcc ttcctatgac caggtatgtg atgggacaac
      721 aggtcatgca gagtcaattc agattgtatt tgatccaagt gttatagatt ttgataagat
      781 cctgaatatt ttctggcata cacacaaccc caccaccctt aatagacagg gtaatgatgt
      841 tggcacacag tatcgatctg caattttcta tcataacgaa aagcaaagag agattgccga
      901 gaaatcgaaa aaagatctcg aaaaggaggg gatttataaa gattctatta taacagaaat
      961 tacacctttt aagaactttt atactgcaga gaattatcac aaagattatt acgataaaaa
     1021 taaacaagct acctattgca actttgtcat tgatccaaaa atacacaaac tgcttaaaga
     1081 gtatgaaaat gacataaaag cagaatatgc ttgaatgttc tgtctataaa attttagtag
     1141 ttatgtgaat ttgtaaatgt ctattgtagg atggagaagg tcttgtttgc agttaataat
     1201 cccgttgaaa tagaagcagt atagttacct ggccctactt gctgtccatc ggagtccttc
     1261 tgatcccatt tcacggattt cgttccgcca gaatctaaca cggtaattac ctgtgctgac
     1321 attaaggaga atttttcatg gctctgtgca ttttgtatag tcagtcctaa aacagcgtta
     1381 gggaaagtta atggttctgt tccagtatta attatggtaa cattgacaat atctccagct
     1441 ttataaactg acttatcagt gtaaatagca actaattgtt cactattatt agtcagatga
     1501 ggaaccgatc ttactgaaga ctctctggga ctacaatacg ccaccgtagt tggttcaggt
     1561 ggaggaggac acagatctgt tgcgggacat tcagtaggag atctaaccaa ctgaccacta
     1621 gtgcaacgta cttgtccttc ttgcgcaaat gcatacataa taagaccttg actagaactc
     1681 ggtgatagaa ttattgaaga cgtcatcagt gaaaatgaac aagaaaacaa aaatccgaaa
     1741 agcagaacgc ctttatgcac atcataataa ttcatccaag tcgatataaa catacattgc
     1801 gaaagtcgta gagatttaaa ctagtactaa tatatctaca atagttttgt gaaaatacgt
     1861 tgtccattac attttcatga agttgacttt atttatttcc aggacagcat caaagattga
     1921 aatagacatc attgttatca gttattagtt ggttttcggg attgaattga aaggatttca
     1981 tcgtaacgat aggtgtggag acagaggtgg ctggtttgga ggattaaaag cacctgcgat
     2041 aactccaatg aatgttggag aagaatatca tgtaaagatc aaagatgtga acagacagac
     2101 aaacaatgga atagataaga tagaactttt cgtaaatttt gttagcaatg cgagtcctag
     2161 ggagagagta atggtacgca atgtaaattt tagaactggt gacgcagggc cgaaagcttg
     2221 aataagataa taagaaagaa cgcagagccg ggaatgactg cgtacgagcc gatagggcga
     2281 aaaaaaccga ataaggaaaa atgtttgcga tgacgtgcaa gggtatttgt cttaggcata
     2341 aagcaattaa accaattgga gtgggaagat atgctgccgg ccaaaaacga tgtcagatgt
     2401 gcagtatttt tgttaaatgg gaaggttttt tctgcccgtg ctgtggatac agacttcgta
     2461 caaagccaag aaatcaaagg tacaaattaa aattggctca aatacagtct aaaaaccttc
     2521 aaaaaattaa caaac
//
LOCUS       DASSIK010000343         2496 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_965693, whole genome shotgun sequence.
ACCESSION   DASSIK010000343 DASSIK010000000
VERSION     DASSIK010000343.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2496)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2496)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2496
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_965693"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..344)
                     /locus_tag="VFI64_06350"
     CDS             complement(<1..344)
                     /locus_tag="VFI64_06350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242945.1"
                     /translation="MINKKIILGVVIMITLTTAMTAIVLHQVEAVIAPEQTKRGAAAP
                     VATFENDVYVAWWTNKTGNDEVMYRVSSDAGKTFTEKINLSNTPNSDSTDVEISADEG
                     KVAVTWWERSQTT"
     gene            complement(685..990)
                     /locus_tag="VFI64_06355"
     CDS             complement(685..990)
                     /locus_tag="VFI64_06355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242946.1"
                     /translation="MSSIILEFDPFDGVENIIAVAIGVFSLLLLALSITAFRKTRLRI
                     TIYAMIIFALFAIQQLLDYSSNIYSSLDTPITDVVISALTLAILVLFFLAIVKTKFS"
     gene            complement(1029..1571)
                     /locus_tag="VFI64_06360"
     CDS             complement(1029..1571)
                     /locus_tag="VFI64_06360"
                     /inference="COORDINATES: protein motif:HMM:NF024804.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HET7242947.1"
                     /translation="MDDVKGTSEKLLLFIQGNPGCHLRRIRTTLGVSMGTVQYQLDKL
                     EKMGKVTSSRRGLYKYYFPAGLFKENEKEILEVLTHETARKMLLFIIEQKNPTQTDIA
                     NSLKISARSASWHVGRLIDLKIIREIKDVRYKRYQIYESDPKYIITLLRNYYPSIWDK
                     WSIRVVEMFLSLSSDREKSE"
     gene            complement(1897..>2496)
                     /locus_tag="VFI64_06365"
     CDS             complement(1897..>2496)
                     /locus_tag="VFI64_06365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242948.1"
                     /translation="HGFSKNNSDIVVGNHDSAKDVNSWLGTNTTFGKHDFAKGKVAVF
                     NIDANIQFDCSSPQFLTVKRNIEQSQVQYKIALVHQPFVTVKSKHPDNGQFDCYNPMF
                     KANNIIAVLQAHNHNYQKEMVSDIFYGVFGTGTHDVGSKMYPCDSKTDQNGVPALCIT
                     GENGVTILDLKIDNASSKHIDGWFVNGAEKVIDRFSLGN"
BASE COUNT          764 a          486 c          428 g          818 t
ORIGIN      
        1 gtggtctgac tacgttccca ccaagtaact gcgacctttc cttcatctgc cgatatttct
       61 acgtcagttg aatcagaatt aggagtatta cttagattaa tcttttctgt gaaggtttta
      121 cctgcatctg aagatactct atacattact tcgtcgtttc ctgttttatt tgtccaccat
      181 gcaacataaa catcgttttc aaatgtagca actggtgctg cggctccgcg cttggtctgc
      241 tcgggggcaa ttactgcctc tacttgatgt aatacaattg cagtcattgc cgttgtaaga
      301 gttatcataa tgacaactcc taaaatgatt tttttattaa tcatgagacc ttttatatta
      361 cataaattat aaaactagtg ctataggcgg ctcagtttgt aaaacgtaaa ttgcattgtc
      421 atcatcatat acatccaact aggtgccgta acgattatcc ccattatagt tctaacactt
      481 tactgatgtt gataatggca caagttgtat gcattaaaac atgattcaag gtacctttct
      541 ttatattagc gacatgatca aaaaacgaac tgcacttaga aatacattgc atatctttca
      601 aattatagaa ctatcctaac ttgtcagaat aagaaattgt gattatcttg tcctcaaagt
      661 ctgtcatgac ctgagatatt ccatttagct gaatttagtt tttacaattg ccaaaaagaa
      721 taggaccaaa atagccaggg tcagcgcaga tatcactaca tcagtaatag gagtatccag
      781 tgagctatag atattgcttg aataatctag taattgttgg atggcaaaca gagcgaaaat
      841 aatcatggca tatattgtta ttctaagacg agtttttcta aatgcagtga ttgaaagagc
      901 aagtaataag agcgaaaata ctccaattgc gactgctatt atattttcta ctccatcaaa
      961 tggatcaaac tcaagaataa ttgacgacaa actcattagc aatgtcaaca taagttcatc
     1021 attaccacct attccgactt ctccctatcg ctagataatg atagaaacat ttctacaact
     1081 cttatactcc acttatccca tatactggga tagtagttcc taagaagtgt tatgatatat
     1141 ttaggatcac tctcatatat ctggtatctt ttgtatcgta catccttgat ctctctaatt
     1201 atcttaagat caatcaagcg tccaacatgc cagctggcag acctcgcaga aatttttaaa
     1261 ctgttagcaa tatctgtttg cgttgggttt ttctgctcta ttataaataa aagcattttc
     1321 cttgcagttt cgtgggtcaa aacctctagt atttcttttt cattctcttt gaaaaggcca
     1381 gcaggaaaat aatatttata caaaccacgc ctgctagacg tcacttttcc cattttttct
     1441 aatttgtcta attgatactg tactgttccc attgaaacac ccagtgtcgt tctgattcgg
     1501 cgcaaatggc aaccaggatt accttgaatg aacaataaca atttttcgga agtacctttg
     1561 acatcatcca caaccaagca gccacccata agaagaaaca gacgtagtag ctaacaaagt
     1621 aattaaacaa tttaataatt tccattgata aggacactgt tatagttgct gatgccttct
     1681 tttatcaata atacgttgtg gtacgagtgt gtaagcgatt aatagatttc tcttttacag
     1741 tgtaaataaa catgagagac aagtgacctt gagccaggag tgactgagga caatttacac
     1801 gctccttgag tgctaggtaa tagacaacga taccaagctg gttagctatc tcaagtgaat
     1861 attgattgag aaggctgaac catgaggaag aattccctaa ttgcctagtg agaacctgtc
     1921 aattactttt tcagcgccat taacaaacca tccatcaatg tgttttgaac tggcattgtc
     1981 aatcttcaag tctagtatgg ttacaccatt ctcacctgtt atacataatg cgggtactcc
     2041 attttggtca gtctttgaat cacatgggta catttttgaa cctacatcat gggttcctgt
     2101 gccaaaaact ccatagaaaa tatcagagac catttctttt tggtaattgt ggttatgagc
     2161 ttgaagaact gcgattatat tattggcttt gaacatcggg ttgtaacaat cgaattgtcc
     2221 attgtcagga tgcttgcttt tcacagtaac aaacggttga tgaactaaag ctattttgta
     2281 ctgtacttgt gattgctcga tgttcctttt aaccgttaga aattgcggac tggagcaatc
     2341 aaactggatg tttgcatcta tgttgaagac cgcgaccttg cctttagcaa aatcatgctt
     2401 tccaaaagtg gtattagttc caagccatga atttacatct ttagcagagt catgattacc
     2461 aactacaata tcagaattat ttttgctgaa tccatg
//
LOCUS       DASSIK010000344         2238 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1173414, whole genome shotgun sequence.
ACCESSION   DASSIK010000344 DASSIK010000000
VERSION     DASSIK010000344.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2238)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2238)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2238
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1173414"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(373..549)
                     /locus_tag="VFI64_06370"
     CDS             complement(373..549)
                     /locus_tag="VFI64_06370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242949.1"
                     /translation="MSKENPDKDDTWCTISVNEIKTTVLVRHLGGGKFKVIDDHLDGS
                     LIGRILDASEIYHC"
     gene            801..1049
                     /locus_tag="VFI64_06375"
     CDS             801..1049
                     /locus_tag="VFI64_06375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242950.1"
                     /translation="MIAHNKKEWKELPNFKKIILTKNGERLNYTIERIEKPVDGGGWY
                     LHCNNAGLSFEYTLKNTLKILNEMTQKEGYSVLEVQNN"
     gene            1300..1890
                     /locus_tag="VFI64_06380"
     CDS             1300..1890
                     /locus_tag="VFI64_06380"
                     /inference="COORDINATES: protein motif:HMM:NF012355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HET7242951.1"
                     /translation="MTSLNQVNAQTNENSAKIVAAGGGNSTSPLTIFVPYNIEIKAGE
                     SVTWNNPTPVAEPHSVTFMKDSKYFPAFVAPFQVPNSTEFQSLDPNSNAEPLIVPAPG
                     ESPQTKTVVTVNARAFIPIVLDSSGKNVTYLAPNSNYTMDGTESYVNSGWLWPEGQAP
                     PDGPPITKFTVTFEKPGTYSYVCNVHPWMKGEVTVK"
BASE COUNT          702 a          447 c          374 g          715 t
ORIGIN      
        1 gcatcggcat cccttgctcc ctgaaatact ctataatagc aacctttcac attttccaga
       61 gtcattgtgc catatcagtt ccccatccta gtaacgtcgt aaaaatacct tgtcaacgcg
      121 tacgcagaag atacaagtac actcgacaaa agatgtaact gccaagattg caatcataat
      181 cataatgcca ctttttaata actttgtctg ctgtcttgtt ctcttcaaaa tcattcacct
      241 ttaccttatc tggtcacagg ctgggatttc tagagagttc agaataaata attgaaacag
      301 ctcctccctt actttcgctt atttttattt gaattcttaa ctattctatg ttggtaaaat
      361 acaagatgaa gtttaacaat gataaatctc tgatgcatct aatattcttc cgattagact
      421 tccatctaag tgatcatcaa tgactttaaa ttttcctcca cctaaatgcc gtaccagtac
      481 agttgtttta atttcattta cggagatggt acaccaggta tcgtctttgt cgggattctc
      541 tttactcact aaagtctcaa ttattatgag acgttggcag atttatccgt tttctttcat
      601 ctatgatatc cgatcttcgt tcaagtcgaa tctgtttgca gtcgaaaggt ggttgacgac
      661 ggcattaatt gacgctgaaa ctgtggtatt tcaattgggt atattgtgtc gtcaaactta
      721 ggtcgtattc atatctccct ttatttgcta gaatctcaca actaattata taaagaagta
      781 gttttcttta gcagtcaatt atgattgctc acaataaaaa agagtggaag gaattaccaa
      841 actttaagaa aataatatta acaaaaaatg gtgagcgttt gaattacacg atagaacgaa
      901 ttgagaaacc tgtagatggc ggtggatggt acctgcactg taataacgca ggattatctt
      961 ttgaatacac attaaaaaat acattgaaaa ttttaaacga aatgactcaa aaagaaggct
     1021 attctgtact agaggttcag aataactaat tctagctgca acaacaattt cttaacagcg
     1081 ataagactga attttctggc cgtggaagaa caaattggtc aaacctctag actacaccaa
     1141 ctgtctattt tcgtggttat tttgaggctt ccgctgaatg gtatagatag taattcggga
     1201 atttttaaat atgagcataa ttcttgttag atagttatgc tggcaattaa tccacagata
     1261 attctggtcg cattagtagt aatatctact ctatcaatct tgacttctct taatcaagtc
     1321 aatgctcaga cgaatgaaaa tagcgctaaa atagtagcag caggaggagg aaacagtact
     1381 tctcctctga ctatttttgt accttacaac atcgagatca aggctggtga aagcgttact
     1441 tggaataatc caacgcctgt tgcagaacca cattctgtca ctttcatgaa ggatagtaaa
     1501 tacttcccag catttgtggc gccattccag gttcctaatt caacagaatt tcaatcacta
     1561 gatccaaatt ctaatgcaga accgctgatt gtacctgctc caggcgaatc gccgcaaaca
     1621 aagactgtag tgactgtaaa tgctcgagct tttattccaa ttgtattaga ttcttctggc
     1681 aagaatgtta catatcttgc cccaaactca aattatacta tggatgggac tgagagttat
     1741 gttaattctg gctggctttg gcctgaagga caagcacccc cagacgggcc tccaataacc
     1801 aaatttactg tgacattcga aaaaccgggc acctattcat atgtatgcaa tgtgcaccct
     1861 tggatgaaag gagaggtaac agtcaaatag caaactgaaa ggcactgcta ctatcatctc
     1921 cgtaatttat caattcacag gagccttcct ccgtcgataa cctctaaatt tttaattgtt
     1981 aatctctaat cgttacactt tacatcctgg ccaaattgat acttaccata tttttcataa
     2041 tattactcca tcatttgcga accaaattaa tacgatctta actttttcaa taaatcaaaa
     2101 attagatcgg caggcaacag aatattgtca caggctctaa aaatgacatg atgttcatga
     2161 caaattaaaa cgagtattat cgaaactgtt ttactgcctt acttctgatc ttcctttctg
     2221 attattaatt tgttctca
//
LOCUS       DASSIK010000345         3156 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1173796, whole genome shotgun sequence.
ACCESSION   DASSIK010000345 DASSIK010000000
VERSION     DASSIK010000345.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3156)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3156)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3156
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1173796"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1015..1809)
                     /locus_tag="VFI64_06385"
     CDS             complement(1015..1809)
                     /locus_tag="VFI64_06385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242952.1"
                     /translation="MNELELKDLFVSSLESGHIFDNKNRNLPFINPKNEIRIKNEGYF
                     GQFDLVIAILHKNSKSLQASSELESYQNILMRTNQLTELARSEKRRIDCISFYPVELK
                     SSRDVLDGRLPNQIMNAILTFGRSMVVLDRKHIKRASLKFIRMLPATIIAHTGRKDYF
                     RVISVFDRIVDTGMFNIPKRRFVKTLLDNGISEGIDKIYRRLSTLERINQKLIFNQLY
                     NSDAGFLKEEVEFLRQFSSIEATMSYKKQILKYVKESESVKITDYL"
     gene            2547..3017
                     /locus_tag="VFI64_06390"
     CDS             2547..3017
                     /locus_tag="VFI64_06390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242953.1"
                     /translation="MKDDEESSNLVINWIVESKSSSGEFEDYTQALSAFKNISKDGKH
                     VILYEARKNALDGSTIKKIPLLNSKKIRSTSPFRKSPQNKSEHDVHPKNRSSFKDLKV
                     RIFLLIVVLFCFLIIIYFINILTTSPSDFSSNSIHNFLIFSVDHLVVSGGLTLR"
BASE COUNT         1013 a          575 c          509 g         1059 t
ORIGIN      
        1 gcgcaattgt tacaagacca atacctccaa gtaaaagtat aatgcctcca attattcgta
       61 atatagctat aattgtaact cccaatggcc tattggtttc caactctgtg tctcactagt
      121 gactagcata aatgtttttc acatcgatca cgatgaaaaa ctaaatgtct aaaataaaac
      181 agaatttatt tatggacaat gagagctata tctctatttc ccaaccataa aagataaact
      241 aaatatataa ttagaattcc atgccgttgc ttattctcca taccattgta tgccatcttc
      301 tattagaaaa aatggaaaag gatggaacat cgcatgaatt gggtcatcaa ttacaatcaa
      361 ttccagatac attggctgcg tctttcgcta cctcgtaaga tggtatacgt tattagccaa
      421 aactattgcg tttagagata accagctaca gcaagagtct tacgttagag atttattatt
      481 gtgatcgtaa atcttcaaag aagtaactag gtatctttga taattgttca actttccaat
      541 gacaactcca acagaatcca cacgtgacac aggaaaatag tgatctttgc atacaagatt
      601 cacatttctg atacttccat gcaacagtat ccctaagata ttcatgtctt ttataggcag
      661 ccttattcct gacccaggaa ttcattttac tccggttagg aatggatttt cgtatcattt
      721 acactgtcgc ctatacaata atgtagatct acatcatcta tatggattta atactctcat
      781 tatataggta gtctctatat tcgacttgcc aaggggaaat aataacctca tttattcatc
      841 atccaataat aacttgtact gacatttatt gttgactgga tcttaaaata aatgtactca
      901 tgttaacgta cctcttactg aatggcatga tgtagatgat aatgatttgt catggtaatt
      961 acaagataat aggtagacga ttccctttag tagtggatgg atcgattgaa ccaactacaa
     1021 gtaatcggtg attttgacag actcgctttc tttcacatat ttcaatatct gttttttgta
     1081 tgacattgtt gcttctatac tggaaaattg acgcagaaat tcaacctctt ctttcaagaa
     1141 tccagcatca gaattgtata attgattaaa gatgagtttc tggtttattc gctctagagt
     1201 tgaaagcctt ctgtatatct tatcaatacc ttcagagatt ccgttatcga gtaacgtttt
     1261 tacgaatctt cttttaggta tattaaacat tccggtatcc acgattctat cgaatacaga
     1321 tattactcta aagtagtcct ttcttccggt atgagctata atagttgcag gcagcattcg
     1381 gatgaacttg agcgaagctc tcttgatatg ctttctatcg agaacaacca tagaccttcc
     1441 aaaagtgaga attgcattca ttatttgatt cggcaaacgc ccgtctaaaa catccctgct
     1501 cgatttcagt tctactggat aaaatgatat acagtcaatc ctacgttttt cactccgggc
     1561 aagctcagtc agctgattcg ttctcatgag aatgttctga taagattcta attcgcttga
     1621 agcttgtaaa ctcttactat ttttgtgtaa aattgcaatt accaaatcaa actgaccgaa
     1681 gtaaccctcg tttttaattc taatttcatt cttgggattt ataaaaggca aattgcgatt
     1741 cttattgtca aatatatggc ccgattctag tgaactaaca aataagtctt ttaattctag
     1801 ttcattcatt cattttcgtt cctagaaggg attgcaaagt caattgacaa ctaaatatat
     1861 tgactaatat attaaacaca tgctctttgt tctaggtcta gttgcactta tttgagggaa
     1921 aaacatactc ttaattttat gaacagatta ctatcagcat ttgcttcttg cggctaataa
     1981 attacttttt ttcataagta gaatcaattt tttggtccaa ttcgagtagt ctctctaaca
     2041 tgttcttttc caattctatc atcctccgtt ctaatctcaa caagtgttct atagtggtat
     2101 cttgcttctt ggaggtcttc ttctgtctat tgtaaatcca ccaatttata acggcaccaa
     2161 tcgctaatcc tgcgattaga caattaaatc tccgaattgg tctgtattag aataatcagt
     2221 acaaaaatcc ccaaataata tacaatgaag gttggggatt cgcccaccaa gactggtccc
     2281 caagccttgc aaccttacga agtaatagga gggtactcct aaatgcttgt ttccgatgaa
     2341 gttagtaata gagatactac tccatccaaa ataaagattt ctggtgataa ccaaagagtt
     2401 agaggatgaa tctaagcaac aaagctatca taaactgctt aaccataatc agggatttcg
     2461 aatggtaagg tctaagtcat agagataact cgaccttttg cgtccaatta ttttatatta
     2521 tctctagttt atacttacaa aaagaattga aggacgatga ggagtcttcg aatttagtga
     2581 taaattggat agtagaatca aaatcatcta gtggagaatt tgaggactat actcaggcac
     2641 tgtccgcgtt taagaatatt tcgaaggacg gaaagcatgt tatattgtat gaagcaagaa
     2701 agaacgcttt agatggatca accataaaga aaattccatt attaaattct aaaaaaataa
     2761 gatccacatc accatttaga aaatctcccc aaaataaatc ggaacatgac gttcacccaa
     2821 aaaacagaag tagcttcaag gatctaaaag taagaatttt tcttctaatc gtagttttat
     2881 tttgttttct tattataatt tattttatca atatacttac taccagtcca tctgacttta
     2941 gcagtaacag cattcacaat ttcttaatat ttagtgttga tcatctagtt gtctctggtg
     3001 gactgacgct cagatagata tttcatttgg aagaaagtga aatcaatgaa tgctttatca
     3061 ggagaatgga ctactcatga agtttgcaga tgtgtttgct ttttgatcac gaggttcaat
     3121 tgtagggtaa tttaggtgtt aattcctcaa gtatca
//
LOCUS       DASSIK010000346         2611 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_966011, whole genome shotgun sequence.
ACCESSION   DASSIK010000346 DASSIK010000000
VERSION     DASSIK010000346.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2611)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2611)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2611
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_966011"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            101..265
                     /locus_tag="VFI64_06395"
     CDS             101..265
                     /locus_tag="VFI64_06395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242954.1"
                     /translation="METVEERIVRLLVEEKTLLKILRTIDGQFDKEGLDEWINRRHIS
                     ITKDNPIWVN"
     gene            456..2057
                     /gene="pckA"
                     /locus_tag="VFI64_06400"
     CDS             456..2057
                     /gene="pckA"
                     /locus_tag="VFI64_06400"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004612 - phosphoenolpyruvate
                     carboxykinase (ATP) activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HET7242955.1"
                     /translation="MTEDNNNTPDSVQLQLGQMNFNFGKIHRNLPVATLTELAIQRNE
                     GILSSTGALAVNTGKFTGRSPEDRYIVDDDTTHDLVNWGKVNHPLLPEKFEGIFNRMR
                     QHISGREFFIFDGFVGADQETRLPIRVLTDSVWHSIFATQIFIRPNSRELQSHIPGFT
                     LLAVNDFSAIPEIDGTGSGTFIIINFTKKMILIGSTSYAGEIKKAFFTVMNFLLPLKG
                     VFPMHCSANVGGNGDTALFFGLSGTGKTTLSADAQRALVGDDEHGWSDKKVFNIEGGC
                     YAKCINLRKENEPQIWNAIKFGAVMENVVVDDNSRKPDFDDSRLTENTRVAYPLDYIP
                     GAVVPSIAKHPNVIIFLTADAFGVMPPIAKLTKEGAMYHFISGYTSKLAGTERGITEP
                     KETFSQCFGAPFMPLHPIVYARMLGERISTHKTMVYLINTGWTSGPYGIGKRMELKYT
                     RKMVSAAINGELDTVSYKHDDIFNLDIPVYCLGVPSEILDPSSTWSDKRDYVVAAKRL
                     AGLFVRNFERFGDTVADLAKSGPTV"
     gene            complement(2065..2200)
                     /locus_tag="VFI64_06405"
     tRNA            complement(join(2065..2099,2119..2163,2191..2200))
                     /locus_tag="VFI64_06405"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2120..2122),aa:Gln,seq:ctg)
BASE COUNT          814 a          504 c          580 g          713 t
ORIGIN      
        1 ttataactaa actggtatta ctaaaatatt tagttataaa tcgtcgttac taaataatag
       61 taataactaa atacgaatct aggttaatag tatcgggttg atggaaacag tagaagaaag
      121 gatagtaaga ttgttggtag aggaaaagac cctattaaag atccttagaa ccatagatgg
      181 tcagtttgat aaagaaggtt tagatgaatg gattaatagg cgccatatat ccattacaaa
      241 agacaatcca atttgggtaa attagggaat atcgacaaac agtttgaaaa agactgacca
      301 tatgaggttt aggcaatcca actaattggc tgttgaatca agaggatttt tcactcggag
      361 tgaaattatt cttattatct ctagttatgt tttattatca atcgaggacg acatgaaatc
      421 aattaaatag cgagtaggaa ggttaattcg tgctaatgac tgaagacaac aacaacactc
      481 cagacagcgt ccaacttcaa ctcggccaga tgaatttcaa tttcggtaaa atccatagaa
      541 acctacctgt ggccacatta acggagctgg ccatccagag aaatgagggg atcctttcga
      601 gtacaggggc attagcggtt aatactggga agtttacagg aagatctcct gaagacaggt
      661 acatcgtgga tgatgacaca acgcatgatc ttgtaaactg gggaaaggtg aatcatccac
      721 tccttccaga aaagtttgag gggatattca acaggatgag acagcatata tccggcaggg
      781 aatttttcat cttcgatggg ttcgtaggcg cagatcaaga aacgagatta cctatccggg
      841 ttcttacgga ttcagtctgg catagcattt ttgccactca gatatttata cgacccaaca
      901 gcagagaatt acaaagtcat attcctgggt ttacactctt agctgttaat gatttctcag
      961 caattccaga aatagatggt acagggagtg ggacgttcat aattattaat ttcactaaaa
     1021 aaatgattct aattggctcg acttcctatg caggagaaat aaaaaaagcg ttctttactg
     1081 ttatgaattt tctcttgcca ttgaagggag tattccctat gcattgctcg gcaaatgttg
     1141 gagggaacgg agacacggct ttgttttttg gactatccgg tacagggaag acgacattat
     1201 ctgccgatgc tcaaagggcc ctggttgggg atgacgagca tggttggtct gataagaagg
     1261 tctttaatat cgaaggtgga tgttacgcca aatgtataaa cctcaggaaa gaaaatgaac
     1321 cacagatctg gaatgccatt aaatttggag ccgtaatgga aaatgtagtt gttgatgaca
     1381 atagtcgaaa accggatttc gatgacagca gattgacaga aaatactaga gtggcttacc
     1441 cgttggatta cattcctggc gccgttgttc caagtattgc aaaacatcct aatgtgatta
     1501 tatttttgac tgccgatgct tttggagtca tgcctcccat agcaaaattg accaaagagg
     1561 gagcaatgta ccacttcata tcgggttata ccagtaagtt ggctggaact gaaagaggca
     1621 taactgagcc caaggaaacc ttctctcaat gttttggagc accctttatg cctttacacc
     1681 cgatagtcta tgccagaatg ttaggcgaaa ggatttcaac ccacaagaca atggtctacc
     1741 tcataaacac cgggtggaca tccggacctt acggcattgg aaagagaatg gaactaaagt
     1801 atactagaaa aatggtgtca gctgcgataa acggtgagct agatacggtt agttataagc
     1861 acgatgatat tttcaaccta gacattcccg tgtactgcct aggtgtcccg tcagagatat
     1921 tggatccgag ctcaacttgg tccgacaaac gagattacgt ggtagccgca aaacgattgg
     1981 ccgggctatt tgtcagaaac tttgaaaggt ttggtgacac tgtagctgat ttggccaaat
     2041 ccggaccaac tgtataagaa aaggtagccc ggagcagatt cgaactgctg tctccaggtt
     2101 tctattctct gttgagatcc agagcctgaa atccatagcc ctcactggag attggccact
     2161 agattcggca cctgcacgca gtgctaggtt cgaccgggct aatcacgagc tacaccaaaa
     2221 gttgatgagt gggttatttg tttttaccga tctctttgat taccattaat attctatcca
     2281 ctgaagaatc cggctatgta ttcctcacaa tagatgcctc ctcaatggaa ccctagtgga
     2341 atttcaaata ttctaaggac cccaagtctg ttgatccagg cctcgagata aataatgcaa
     2401 gatagtaatg taacaactct ggaggattgc tacacagaga gacaattcta atccactaga
     2461 gttctccaaa tcctccgcgc tcaatttagt taaccgaagt ctggtccaga agttcttctg
     2521 gccccaatat ttcactccat tttaacggat gaaagaaggt catacttggt ctgtattata
     2581 gtagcgcgat ttagtagtca agccatccat c
//
LOCUS       DASSIK010000347         4192 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_70723, whole genome shotgun sequence.
ACCESSION   DASSIK010000347 DASSIK010000000
VERSION     DASSIK010000347.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4192)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4192)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4192
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_70723"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1880
                     /gene="rpoA2"
                     /locus_tag="VFI64_06410"
     CDS             <1..1880
                     /gene="rpoA2"
                     /locus_tag="VFI64_06410"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit A''"
                     /protein_id="HET7242956.1"
                     /translation="LWLKDETRAEISGVIQKAYEKVYELIKQYEDGSLPLTRGLSPEE
                     ALELYVVNELSRARDRAGKTADRAFPDHNSGIIMASTGARGSTLNIGQMTAALGQQSI
                     RGKRINKGYLGRSLAHFKVNDSNPDSKGFVKSNYRDGLSPLEFFFHAMGGREGLVDTA
                     VRTQQSGYMQRRLINALEHMKIEYDQTVRDPHGNIIQYMYGEDGIDPAKSDHGEAVNI
                     SRVIESESVVDEGKKSSESEITEILNKYGPNLNPRLTEKLLTSLNQNTLSKKGTEKVV
                     KKAIDLIEKAMAEPGEAVGVVTAQSIGEPGTQMTLRTFHFAGVKERNVTLGLPRLIEL
                     VDARKKPVTPTMDIFLDEEHKISREKALEVARDIIFTRVSDLIEKTETDYSGVLTFYL
                     SESKLLERGCSVNDVHEVFKGSKKKYEVSLNEKKHTVKITIPDEPDAQTLLTLKNKLL
                     NARVKGVPDIERVTIVKQDDEWVIQTAGSNLSKVILVDGIDSTRITTNNVYEIWQSLG
                     IEAARTALMKEITNTLEEQGLEVDIRHIMLVSDLMTSKGYLQQIGRHGIAGTKTSVLA
                     RAAFEITVPTIARASLEGQVESLRGVTENVIVGATVPVGTGMVELYMSVRENEESRED
                     N"
     gene            1855..2154
                     /locus_tag="VFI64_06415"
     CDS             1855..2154
                     /locus_tag="VFI64_06415"
                     /inference="COORDINATES: protein motif:HMM:NF013417.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal L7Ae/L30e/S12e/Gadd45 family protein"
                     /protein_id="HET7242957.1"
                     /translation="MRNLEKIIKDALDAKKCKFGAREVMHSTKGSRLIVLTKSVSEAM
                     KSKIIEQAQATEVPIFDYNGNSLQLGKLCNRPFRVSAIALKIGDDDEIRNILEGN"
     gene            2433..2912
                     /locus_tag="VFI64_06420"
     CDS             2433..2912
                     /locus_tag="VFI64_06420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NusA-like transcription termination
                     signal-binding factor"
                     /protein_id="HET7242958.1"
                     /translation="MTEKIKLTSDELRLMSLFQNVTAAVARDCIVDEKMDRVIFIVNK
                     GQMGLAIGKGGATIRQLQNVVARKVELVEFSDDPSEFLSNVLNSDMINEIKINNRFDG
                     TKQAVVVVDSNKKGVVVGKEGRNAEKARLLAKRYFQISTVMIVSEEQIPNRNNQVEL"
     gene            2913..3350
                     /locus_tag="VFI64_06425"
     CDS             2913..3350
                     /locus_tag="VFI64_06425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018039449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HET7242959.1"
                     /translation="MAKSPLGLFAGRVLKSKRKVLRWSNKYYKRRMLMLDKKANPLEG
                     APQARGIVLEKVGIESKQPNSAVRKCVRVQLIKNGKSITAFLPRDGALNYVDEHDEVM
                     LEGIGGSMGGAMGDIPGVRWQVFKVNEVSLKELVYGRKEKPRR"
     gene            3356..3961
                     /locus_tag="VFI64_06430"
     CDS             3356..3961
                     /locus_tag="VFI64_06430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HET7242960.1"
                     /translation="MSSKEYNNMLLFNKWDSRKIDVNDLGLQRVISLSPSVIPVTFGR
                     HEHQRLRKAEVHLAERLVNKLMRFGKKYAKNTGRMGGKKARIFKTVQVSFDIIHAETG
                     KNPIELLVRAIENAAPNEDTTRIVYGGVVYHVSVDVAPMRRVDLALRFIAEGVREATY
                     SNPRTMEEVLAKEIVLASNNSMESHAIKKKNEQERIAMSSR"
BASE COUNT         1449 a          677 c          984 g         1082 t
ORIGIN      
        1 atttgtggct gaaagatgag acgagggcag aaataagtgg cgtaatccaa aaagcttacg
       61 aaaaagtgta cgaattgata aagcagtacg aggacggttc cttgccattg acaaggggac
      121 tatctccaga agaggcttta gagctctacg tagtcaacga gctttcgagg gctcgagata
      181 gagctggaaa aactgcagat agagcatttc cagatcacaa ttctggcata atcatggctt
      241 ctacgggtgc tcgcggatcc actctaaata taggtcaaat gacggcagca ttgggccagc
      301 aatcaataag aggcaaaaga attaacaaag gatatctggg aaggtcgcta gcgcatttca
      361 aggtcaatga ttcaaatcct gattcgaagg gatttgttaa atcaaactat cgtgacggac
      421 tcagcccatt ggaattcttt ttccacgcga tgggtggaag agaaggtttg gtagataccg
      481 cagtaagaac acaacaatcg ggttacatgc aacgcagatt gattaatgct ttggaacata
      541 tgaaaattga atatgaccag actgttaggg atccgcatgg taatattatt caatatatgt
      601 atggtgaaga tggaattgat ccagctaaaa gtgatcacgg agaagcagtc aacatttcca
      661 gagtgattga aagcgaatcg gtagtggacg aaggcaagaa atcctcagaa tctgaaatta
      721 cggaaatttt aaacaaatac ggtccaaacc tcaatcctcg gctgacagaa aaattactaa
      781 cgtcgctcaa ccaaaatacg ttatcaaaga aagggacgga aaaagtcgtc aagaaagcca
      841 tagatttgat agaaaaagca atggcagaac caggagaggc cgttggagtt gtgacagcac
      901 agtcgatagg tgaaccagga acgcagatga ctcttaggac ttttcatttc gcgggtgtga
      961 aagaaagaaa tgttactctc ggactaccta ggttgataga gcttgtagat gcaaggaaga
     1021 agccagtcac acccacaatg gatatctttc ttgatgagga gcataagatt tccagagaaa
     1081 aggcactgga agtagctcgt gatataatct ttaccagagt cagtgatctg atagaaaaaa
     1141 ccgaaactga ttattcaggt gttctaactt tctatttgtc agaatctaag ctattggaaa
     1201 gaggctgttc tgtgaacgac gttcatgaag tcttcaaggg ttcaaagaag aaatatgagg
     1261 tatcattaaa tgagaaaaag cacacagtaa aaattacaat tccagatgaa cccgacgccc
     1321 aaactttgtt aacgctaaag aataaacttc ttaatgcaag agtaaaaggt gttccagaca
     1381 ttgagagggt aactattgtt aagcaagatg atgaatgggt gatacagact gcgggatcaa
     1441 atctttcgaa ggttatactt gttgatggga tcgattctac acgaataact accaataacg
     1501 tatatgaaat ctggcaatca ctaggcatag aggccgctcg tactgcgtta atgaaagaaa
     1561 taaccaatac gcttgaagaa caaggactcg aagtagacat aagacatatc atgttggtct
     1621 ctgatctgat gacttctaaa ggttacctac aacaaattgg cagacatggg attgctggga
     1681 cgaaaacgtc tgttcttgcc agggcagctt ttgaaataac agttccaact attgcaaggg
     1741 cgtcattgga ggggcaagtg gaatctctaa ggggtgtcac agaaaacgtt atagtgggtg
     1801 caacagtacc ggttggtaca ggcatggtag agctatatat gagtgtgaga gaaaatgagg
     1861 aatctcgaga agataattaa agacgcattg gatgcaaaga agtgtaagtt cggtgcaagg
     1921 gaagtgatgc attcaacaaa aggatctagg ctaattgtac taacaaaatc agtatcagaa
     1981 gccatgaaat caaaaataat tgagcaagca caagcaacgg aagttcctat ttttgattac
     2041 aacgggaatt ccctccaatt gggaaaactc tgcaataggc catttagggt gagtgctatc
     2101 gccttgaaaa ttggagatga tgatgaaata aggaacattc tcgaagggaa ttaataaaag
     2161 tagcattatt tgaaatatac tcaaaatcgc tggcatgata acaaaccctg taattttgtg
     2221 ttggggatca ggattttagc tgttgtgatc tgaagatatt tatccgagtt aaaatggtaa
     2281 actctaacat taaatgggcc aacaacagtc tttggctaga cgacctcgaa gaatattagt
     2341 aaatgaagac ttaaatgtga ctaatttgtg agcttgaatt gtcattcaat gttgtcttct
     2401 tttgtcagga aattgttaag agatcaataa acatgactga aaagattaag ctcacctcag
     2461 atgaattgag actaatgtca ttgtttcaga atgtaacagc tgcagtagca agagattgta
     2521 tagtagacga gaagatggac cgagttatat ttatcgttaa taaaggtcag atgggtcttg
     2581 cgataggaaa aggaggcgcc acaataagac aactccaaaa tgtagttgct cgaaaagtgg
     2641 aactagttga gttttccgat gatccttctg aatttctaag taacgtactg aattctgata
     2701 tgattaatga aataaagatt aataatagat ttgatggaac taagcaggct gtggtcgtgg
     2761 tggattcaaa caagaaagga gttgttgtag gtaaagaggg cagaaatgct gaaaaggcac
     2821 gtctactggc taagaggtat tttcagatat ccactgttat gatagttagc gaggaacaaa
     2881 ttccaaacag gaacaaccag gtggaattat aattggcaaa atcaccattg ggattatttg
     2941 ctggaagagt tttgaaatct aagagaaagg tgcttagatg gtcaaacaaa tattacaaaa
     3001 ggcgaatgct catgttggac aagaaagcta atccgttaga aggcgctcct caagcgaggg
     3061 ggatagtact tgagaaagta ggaatagaat ccaaacagcc taactctgct gtaagaaaat
     3121 gtgtacgagt gcagctgata aagaatggaa aatcgataac tgcttttttg ccacgagacg
     3181 gtgctttgaa ctatgttgac gagcacgatg aagtcatgtt ggagggtatt ggtggatcta
     3241 tgggtggtgc gatgggcgat atccctggtg tcagatggca ggtcttcaag gtaaatgaag
     3301 tttcactcaa agaattggtt tatggaagga aagaaaaacc aaggagatag tagtaatgag
     3361 cagtaaagaa tacaataaca tgcttttgtt caataaatgg gattctagaa aaatagacgt
     3421 aaatgatctt ggacttcaac gtgtcatatc cctttccccc agtgtaattc ctgtaacctt
     3481 tggaagacat gaacaccaga gattacgcaa ggcagaagtg cacttagcag aaagattggt
     3541 aaataaactt atgcgctttg gcaagaaata tgcaaaaaac acaggtagaa tggggggtaa
     3601 aaaagctcga atatttaaaa cagttcaagt ttcattcgac ataattcatg cagaaactgg
     3661 gaaaaaccca attgaattac ttgttagagc aatagaaaat gcagctccta acgaggatac
     3721 aacaaggata gtatatggag gtgttgttta ccatgtttca gttgatgtgg caccaatgcg
     3781 cagggtcgat cttgcactac gatttattgc tgaaggagtt agagaagcaa catattctaa
     3841 tcctcgcact atggaagagg tccttgcgaa agaaattgtc ttagcatcaa ataattctat
     3901 ggaaagtcat gctatcaaaa agaagaatga acaagaaaga atagcaatgt cctcgaggta
     3961 agcccatctt tatactagtt gtttcaattt tcaagttgtg tagcgggcct tcttatatct
     4021 cttcatagct accgattcga ctaatggggg aaatgatgat gaactacccc agatttgtaa
     4081 aatatcgaac tgaaccactt ggcaaaaagc ttttcaaata acccttcatt aacatcctgt
     4141 tgtttgcatg ttagttgaca tttgagagtt ttgaacctaa acttacgatg at
//
LOCUS       DASSIK010000348         2380 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_263766, whole genome shotgun sequence.
ACCESSION   DASSIK010000348 DASSIK010000000
VERSION     DASSIK010000348.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2380)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2380)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2380
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_263766"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..339)
                     /locus_tag="VFI64_06435"
     CDS             complement(<1..339)
                     /locus_tag="VFI64_06435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242961.1"
                     /translation="MNLKFVEKVEVRGRAIHVTLPQPIGFVTGYHLFIVYTETHGKQF
                     VCQGLPFDPATGKIAPDEILPSDPPGLLTKGQCIPFRPDNSDFIPDAPSLTVLSGPDA
                     KHAYDCFFRET"
     gene            complement(358..567)
                     /locus_tag="VFI64_06440"
     CDS             complement(358..567)
                     /locus_tag="VFI64_06440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242962.1"
                     /translation="MKEPKTLRSVEAFTNEPKDKKMKFCVNCGNIAAHTAYFHVEGAT
                     IIERYCNTCIKTIGEPSKVSRLKEA"
     gene            1186..1437
                     /locus_tag="VFI64_06445"
     CDS             1186..1437
                     /locus_tag="VFI64_06445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242963.1"
                     /translation="MNIAHTEEDFDMIAKTCGCKDRKRKVTYSFVDSYHSLCKDKKDI
                     ILSEIQACEILLKYPGDENDTITVENEIAELRLALDLLQ"
     gene            1562..1777
                     /locus_tag="VFI64_06450"
     CDS             1562..1777
                     /locus_tag="VFI64_06450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242964.1"
                     /translation="MKKTLSSPPTNILYRLSNWWKMINYKVCSNNSMTSPEDANYICR
                     ECNSKFNSLEEMDEHMKKVHNLKISNE"
     gene            complement(1913..2137)
                     /locus_tag="VFI64_06455"
     CDS             complement(1913..2137)
                     /locus_tag="VFI64_06455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242965.1"
                     /translation="MSGEEQIGRLKVEAVNTADKNTLLKIIDRLGAFGNGEYRTRAID
                     AILFVVNTKTDSDVKAYALEVVKRIKEGRI"
BASE COUNT          723 a          442 c          444 g          771 t
ORIGIN      
        1 agtctctctg aaaaagcagt catatgcgtg tttcgcgtca ggacctgaaa gaacagttag
       61 tgaaggtgca tcaggaataa aatcgctgtt gtccggacga aatggaatac attgtccttt
      121 tgtcaagagt ccaggtgggt cagacggaag tatctcatct ggggctatct tacctgttgc
      181 tggatcaaat ggcaaccctt gacagacgaa ctgttttcca tgcgtctcgg tatagacaat
      241 aaaaagatga tatccggtaa cgaaaccaat aggttgaggc agtgtgacat ggattgccct
      301 tccccttacc tcaacttttt caacgaactt taagttcaaa attaccctga tttttcttta
      361 tgcttctttg agtcggctaa cttttgaagg ttccccaata gtcttgatac aggtattaca
      421 atatctttca atgatcgtag caccttcaac atgaaaatag gctgtatgcg ctgcaatatt
      481 gccacaattc acacagaatt tcatcttttt atctttcggc tcatttgtga atgcttctac
      541 agaacgtaat gttttcggtt ctttcatatc atcttacctg ttatcgccag gttagtgaac
      601 agttctgcag tgtgtttttt aagggaaaat taggtactac caccacagta tgctaataga
      661 tgtggtataa aggacttctg gccatagatg ctttttctat ccatttttcc aaagactgta
      721 aaatatggtt gttaaccctc gaatcttaca tgaattccag ctgatttgtg tgaaaggaag
      781 cagcgtattg tcacataaca tattgcaggt gtcttacaac agtatcgaac agtaggcagg
      841 cttaaatctc attactccca ataggatcaa tgtcaattaa atgtcttcgt agggagaact
      901 cagaagaaga tggtttgtca ttgtaagcat ttctaatata gaagcgttga ttcatgagaa
      961 tgaaaacatc tttatcgata agaacaattt tttgatgtgc ggatcatgtt tttggtgtgt
     1021 ttcgtgtttg acaggagtca ggactatctt acattgtcct tcgtgcggta ataataagat
     1081 gcaatatatg cccatttcga attacgagtc ctacaagtta gatcatgatt acatcgatga
     1141 aatggcctca aaattgtgga caagtcaagg tggtgctcat ataagatgaa tattgcgcat
     1201 acagaagaag attttgacat gatagccaaa acttgtggat gtaaggatag aaagagaaag
     1261 gtaacatatt cttttgttga ctcttatcac agtctttgta aggataaaaa ggacataata
     1321 ttgtcagaaa tacaagcctg tgaaatattg ttaaagtatc ctggagatga aaatgacacg
     1381 atcactgttg aaaatgagat agccgaatta agattagcgc tagacttatt gcagtagtaa
     1441 cagaatcgat aaaaaaagag attaggctgg tacaaactgg ttcacattcg tatgggaaat
     1501 tatttttgat caatttcctt tttatcttga cttcaacact cgatacgggc atcccaagaa
     1561 gatgaagaaa acactttctt ctcctcccac aaatatccta tatcgactat ccaattggtg
     1621 gaaaatgata aattacaagg tttgtagcaa taatagtatg acatctccag aagatgcaaa
     1681 ttatatttgt agagaatgta attctaaatt caattcgctt gaggaaatgg atgagcatat
     1741 gaagaaagtc cataacctca agataagtaa tgaatagggt tgaaacttac acattattac
     1801 agtattttcg gccgatttct aagaattata gattggtatt gaccccgcct ccatgaccct
     1861 agttgttgcc tggatcaact ctagaacccc gaatctcata ttctagacta gatcatattc
     1921 ttccttcttt aatcctcttt acgacttcta acgcgtatgc tttgacatca ctgtccgttt
     1981 tagtattaac aacaaataga atggcgtcta ttgctcttgt tcggtattca ccgtttccga
     2041 atgcacctaa tctatcaata atttttagga gtgtattctt atctgctgta tttacagcct
     2101 caactttgag tcttccgatt tgttcttctc ctgacattag tactatatca tatgcataag
     2161 aaaataaaaa tcgttatatg caatacttga atagttttga agcttgcacg cttgttatgc
     2221 gcaagacgta gccctactga cccaaaattt ttagaatgtt aatggttgca caacctctcg
     2281 atttattact ctcgtcttta ttttatactt catatttcgg gggcctgttc ttaatttcct
     2341 tccacagcaa ggacaccata ctcctatcca ctctatgaat
//
LOCUS       DASSIK010000349         3343 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_474795, whole genome shotgun sequence.
ACCESSION   DASSIK010000349 DASSIK010000000
VERSION     DASSIK010000349.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3343)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3343)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3343
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_474795"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(186..332)
                     /locus_tag="VFI64_06460"
     CDS             complement(186..332)
                     /locus_tag="VFI64_06460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242966.1"
                     /translation="MGGTSTIQEQDSILSPVAFGNNVQKLSCQSKVAVRSALLGSTGH
                     VDYN"
     gene            complement(508..768)
                     /locus_tag="VFI64_06465"
     CDS             complement(508..768)
                     /locus_tag="VFI64_06465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242967.1"
                     /translation="MKDARLLKILVEERAMVKVLKTIGQGREYPTRELLTKLGAYGYG
                     HKLLLKAQKRGLVDRKTVKNKVFNRLTSDGKKIVMLAKEIGV"
     gene            1529..2167
                     /locus_tag="VFI64_06470"
     CDS             1529..2167
                     /locus_tag="VFI64_06470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HET7242968.1"
                     /translation="MSASSKINESPSHFMVLEAIARGIDSIDKISIAVRKNKVEVSSI
                     VNDLVVQRLATMIEKRRFFGGKKLKITITETGKSLLGIKHEELKQNKQKLEQLYESGD
                     KQQLQTYMDSNRMWMPYMLFSGLMNVLFFTSMLSFMGMTMSPSESSVADNSGSSSDAS
                     DTAGTDNQADAGGASDATDTGDMSSDGGGFDGGGFDGGGFDGGGFDGGGFGF"
     gene            2544..>3343
                     /locus_tag="VFI64_06475"
     CDS             2544..>3343
                     /locus_tag="VFI64_06475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HET7242969.1"
                     /translation="MSREKRYRIASFLPSSTEILYEVGAGDQITGVTHECNYPDDARS
                     KPRVINSAFDPANMTSREIDNAIVGLVKTGGDIYTVDENELKESRPDLIIAQGVCEVC
                     APFTKEIDRAKSVLGYDPDVLVLDPHDLDDILTSIMDVAKRVGRLDEGTKVIESLLNR
                     INDIKRRVGERRTKSNDFANTKKRDDPNIVCIEWIDPFFSAGHWIPQMVDIAGGHNGL
                     SIRGQPSRRITMEQIVEFNPDKIILMPCGFDVDRTLREAKLLDNLSIWG"
BASE COUNT         1050 a          568 c          679 g         1046 t
ORIGIN      
        1 atcccctgag agatcacgat catgtcattg ctaaaaaaaa agacatagtt atgattaaac
       61 aatgtactat tggggtctgc ttttgtacaa tatctattga cttgagatct taacctaggt
      121 gagattgtta atcgaggaga actctagccg ttggacagat cactatatag gcttttctcg
      181 aaatattagt tgtaatcaac atgtcctgtg ctgccaagca acgctgaacg tacggctact
      241 ttagattggc atgaaagttt ttgaacgtta ttgccgaatg cgactggaga tagtatggaa
      301 tcctgttctt ggatagttga agtgccaccc ataaaattgc tacctaaaca gatactaaat
      361 gtagacaaaa cataatttca gatcgactta ttcatgcctt attcctcatc gtatagtcaa
      421 atcatgttga tttttttaag aaattgagga attatcataa gcattgctta atgcctccaa
      481 ttatttctct atttgattgg tatttggtta gacgcctatt tcctttgcaa gcattacaat
      541 cttttttcca tcgcttgtta gtctattgaa gaccttgttt ttaacagtct tcctgtctac
      601 cagtcctctt ttctgggcct tgagaagtaa tttgtgcccg tatccatacg ctcctaactt
      661 tgtcaacaat tctctcgtag ggtattccct tccttggcct atggttttga gtaccttgac
      721 catcgctctc tcctccacta atattttgag tagtcttgca tctttcatac catggttcta
      781 tacgtataat tatataatcg ttacgcatta ccagaaattg gaataatggg catgattcgt
      841 ggcatcagtc aaaatcatgt atggaagttt tagtaagcaa aaaatgaaaa ctaaattggt
      901 tcaagatcta aatccttctg ttgaaaattg ttttccatgc gctagtcata tttatctttt
      961 gcttgtattt aggtaaaggt aacgataaga ataataagaa tgattgcgac ttttcttatt
     1021 gcttatcagt ctcttgcaac agaaagatta ctatgtttgt cggcaggact aaactgattg
     1081 ttctatcggc ttgaataggt atcggagact caattgctaa tctgctaagc ttgtctggta
     1141 cactcttatc gtttatttcg tatttgggtt gaacaaaaac cttttaagag taaggtttac
     1201 atcacaaggg tccaatccta gtatcaatct ctgagggata acacttaaca tttagaataa
     1261 cgtgtattat gtaaatgtct gacggataac acgaaatggt ttatcaatat ctatgctgca
     1321 tagtgatgga tatttcaatt attactagta atagtttttt tcgcatcagt aaaaagtatg
     1381 tcttattatc ataaactggt aattattagg cactccatgc ccgtagtttc gttccaaatt
     1441 tggaactcga ctatagtgag ataaacctaa tccttttcac cagattagct tatgaatgtt
     1501 taaatgagga tttggtctat aatttagtat gtccgcgagc tcaaaaataa acgaaagtcc
     1561 ttcacatttc atggtccttg aagcaatagc ccgaggtatt gattcaattg ataagatctc
     1621 tattgccgta cgaaaaaaca aagttgaggt tagctctata gttaacgatt tagttgtcca
     1681 acgtctggca actatgattg agaagaggcg cttttttgga ggcaaaaagt taaaaataac
     1741 cataactgag acgggaaaga gtcttctagg tattaaacat gaagaattaa aacaaaataa
     1801 gcagaaattg gaacaattgt atgagagtgg ggacaagcag caactccaaa cttatatgga
     1861 ctcgaacaga atgtggatgc cttacatgtt attttctggg ctaatgaatg tattgttttt
     1921 cacctcaatg ttatccttta tgggaatgac aatgagtcca tccgaaagct cagttgcaga
     1981 caatagtggc agcagttctg atgcttctga tactgccgga actgacaacc aggctgatgc
     2041 tggtggcgca tccgatgcaa cagatactgg cgatatgagt tctgacggtg gaggctttga
     2101 cggtggaggc tttgacggtg gaggctttga cggtggaggc tttgacggtg gaggctttgg
     2161 tttttagaga tattctaagt cgagcaatcc acgaaattca atcagctgaa ctatataata
     2221 gattgatcat acttggctct gcttgatgtg tcgatcttcg tgttccttcc ttcagaaatt
     2281 agtgtaaata acgactcacc tataatacaa gaattctata taaggatcct acattcacag
     2341 taactattgg aaatcaacaa tagttgatgt cttccgtcat tcatgattga agtgcctgat
     2401 tcgcgattaa atcaatataa atctcatctc caaaactcat attggcataa cagtagaaaa
     2461 cacgtataca attagattat catcatagaa tatgtttaaa atattctagt tttcttagtt
     2521 gtcctgtgtc attaggagca aagttgagcc gagaaaaaag gtataggata gcttcatttt
     2581 taccaagttc caccgaaata ctatacgagg ttggcgcagg agatcaaata acaggagtaa
     2641 cacatgaatg taactaccct gatgacgcta ggagcaaacc gcgggttata aattcggcat
     2701 ttgatcctgc caatatgact agcagagaaa tcgataatgc aatagtggga ttagtgaaga
     2761 cggggggaga tatttacact gtagatgaaa atgaattgaa agaatcaaga ccagatctca
     2821 ttattgccca aggtgtttgt gaagtatgtg caccatttac caaagaaata gatcgtgcaa
     2881 aatctgtatt aggatatgat ccagatgtac tggttcttga tcctcatgat ctggatgata
     2941 tcttgacaag tataatggat gtagcaaaaa gagttgggag attggatgaa ggtactaaag
     3001 taatagaatc attgctgaat agaataaatg acataaagag gagagtagga gaaagaagga
     3061 ccaaaagcaa tgattttgca aataccaaaa aaagagacga cccaaatatt gtttgcatag
     3121 aatggattga tcctttcttt agcgccggac attggattcc acagatggta gatattgcag
     3181 ggggtcataa cggattaagc attagaggac aaccatcccg tcgtatcacc atggagcaaa
     3241 ttgtcgaatt taatccggat aaaataattc taatgccctg tgggtttgat gtagacagaa
     3301 cattaagaga ggcaaagtta ctagataatc tttctatatg ggg
//
LOCUS       DASSIK010000350         5359 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_666713, whole genome shotgun sequence.
ACCESSION   DASSIK010000350 DASSIK010000000
VERSION     DASSIK010000350.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5359)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5359)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5359
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_666713"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(383..1531)
                     /locus_tag="VFI64_06480"
     CDS             complement(383..1531)
                     /locus_tag="VFI64_06480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HET7242970.1"
                     /translation="MTQTYSAVDGYATSEGTRKYVDNAIDNNEILRSHFRSFDGLHLS
                     SIGMGTYLGEPTSDDDDLVENAVYESVKSGSINVIDTAINYRLMKSEKSIGRAIDRLV
                     KDNIISRNQIFISTKNGYITNDGDYSSIGMMEYIQKMFISTGLIDPSDISSGYHVLNP
                     NYIARCIDKSLMNMRLNTIDLVYIHNAYEGWYADIGKKEFYESIAKVFQTYERYRSNN
                     KIRYYGMATWTCFRVPQDNKEYLSLEDMINIAEDIGGINHGFRFIQLPYNLAYSEALF
                     LKNQNVSSEKGLTILEACNRLNVGVFTSVPLFQTRLLNAKIPEYSGITDQVLKLIQII
                     RSTPNVTAPLLGHKNPAHVKQNIRIAKIPPLNEVEFEKAIDILSQSSL"
     gene            complement(2237..2698)
                     /locus_tag="VFI64_06485"
     CDS             complement(2237..2698)
                     /locus_tag="VFI64_06485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242971.1"
                     /translation="MTTNPYVDILLNMGWSRIRLITIGEVLRSLSDMNSLELFKTVAL
                     SGGNSIELARRLDLSRKQYYSKMSRLIKNGLIKKYRGNFCLTIFGITIYEVIEELRIM
                     SDRSLAIKTHNLSQNLCPLPANDMSETLTNRRTQNNNQAINLELITVPLTG"
     gene            complement(2918..3823)
                     /locus_tag="VFI64_06490"
     CDS             complement(2918..3823)
                     /locus_tag="VFI64_06490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242972.1"
                     /translation="MQKAVTVSTDLIFSILADRHSVNILKAAFSGMRASSTNYVSNLS
                     KKQFYVRLKRLSDAGLIEKRESFYRTTTFGSLVFHSQVRTMEEAISNYWQLKSIDVLR
                     ARNDFPLQEKETIVNEILCTADLKNLLNSTHLTGFSIIKNYDALVVEVLNLLENAEKE
                     VYFATRYHQPNVSNKVFEKFGNGVLLHVLDGNPEQISVENRLNAIIRTPPNREASDLV
                     SGILRSNRFDLKRLPTLPISFIVVDGNQVAYETVNYANPEQFTTAISKYDDVRLAQQF
                     IQYFKHLSKDATVPRLLEQARSQVN"
     gene            4338..5294
                     /locus_tag="VFI64_06495"
     CDS             4338..5294
                     /locus_tag="VFI64_06495"
                     /inference="COORDINATES: protein motif:HMM:NF014544.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HYR domain-containing protein"
                     /protein_id="HET7242973.1"
                     /translation="MSPVVGLRLYFPFLLVLIGIIIVISHAELSYSQTSSKPASEVDT
                     IPPVITVPNDPVFEATGPDGKVITYKVVATDAIDGIVNVTCTPPFASLFQIGNIKVLC
                     KALDKNGNIASASFTVKVQDTTPPDSAINDSRVGWFGKINSTNSTTSNEINFKISGTD
                     AVGIDHFECRLDDGKWISFQNDGSGKIECQYLRISTGTHAFQARSIDKFGNLDGSPAV
                     FTWIVLPIKEGIQNLAKMTDTTNMTEKEKSDANIPLYQALELITKKTNAGNLQICYNT
                     DSFLNEVSSLFLKNKLNDYQKNQLTVLVLSIKDRLGCVSIGR"
BASE COUNT         1628 a         1024 c          904 g         1803 t
ORIGIN      
        1 attcttatcc atggaagtat gtccaattgt tctcaatagg tttctttttt tccttgtaat
       61 tattttattc cctttacttc agtgtcgccc attgactgtc tattgacgat gtatatatcc
      121 agtccacaat tacaagacta gatgaggcta gtcctaagca aaaggaacct ctgaacacta
      181 cagttctgat aatacgatca agccatgaga attaggcgca ctaaatattc actaaaagtc
      241 aaaagcaata tcacatttcg ccatcaatca cggctttatg aaccataaga acaaattatg
      301 atgccaaagc caaagcaagg taccgtcata gttacttcag gtatggctat agtttgcgtt
      361 gcaagaattt cggaaggtca agttatagag aactttgaga aagaatatca atagcttttt
      421 cgaattcaac ctcattaagt ggcggtattt tggcaatacg aatattctgc ttcacatgtg
      481 caggattctt gtgtcctagt aatggagcag taacattggg agttgatcta attatttgta
      541 ttaatttaag tacttgatct gtaattcctg aatattctgg aatcttagca tttagtaacc
      601 ttgtctgaaa tagtggcaca ctcgtaaata cccctacatt taatctatta catgcttcca
      661 gtattgtgag acccttttca gaactcacat tctggttctt gaggaagagt gcttcgctgt
      721 aagctaaatt atatggaagt tgtatgaatc gaaaaccatg gtttatgccg cctatgtctt
      781 cggctatgtt aatcatatct tctaacgaaa gatactcctt attatcttgc ggtactctga
      841 aacatgtcca tgttgccatt ccatagtatc gtatcttatt atttgatcgg tatctttcat
      901 aagtttgaaa cacttttgca atcgattcat aaaattcctt tttcccaata tccgcatacc
      961 agccttcata cgcattatgg atgtacacca gatcaattgt gtttagcctc atgttcatta
     1021 atgacttgtc gatacatctt gcgatataat ttggattaag tacatgatat ccagagctta
     1081 tatcgctcgg atctatcaat ccagtggata tgaacatttt ttggatatat tccatcatac
     1141 ctatggaaga atagtctcca tcattagtaa tataaccatt cttggtagat atgaatattt
     1201 gatttctgga aataatatta tccttaacta gacgatcaat ggccctccca atgctcttct
     1261 cggatttcat tagcctataa ttgattgcag tatctattac atttatactc ccagatttca
     1321 cagattcata aacagcattt tcaaccagat catcatcgtc tgatgtaggc tcacctaaat
     1381 atgtccccat tccaatactt gacaaatgta gcccgtcaaa gctacgaaaa tgactccgca
     1441 atatttcatt attatcaatt gcattatcca catatttcct agtcccttca ctagttgcat
     1501 atccatctac agcactgtat gtctgggtca ataacgtaga ttagttcggg caagtaaatt
     1561 aatgttggcg ggcattttct aaataattat ttggtttact ctgattgtca gttgatctgc
     1621 ctcaatccat tcactttggc atgtttgata ctttatgtta agtgttgcga acaaactatg
     1681 gagcccgagg tttgactttt gacatgtctg taatatttcc acctacggtt tctgtgtgga
     1741 gtcattacca agaacaatcg ctcattcctt cttatgcttt aaatttaatc tatactacca
     1801 tatttctgat atctacccac tatggtagac aatttttgcg aaccaagaac aataaagatg
     1861 gataggtagg atcatgccac aacaccgatg tccaagatta tttattttac cccctttgct
     1921 gacaaattga tactccgtgt gtatttctta ataatattat aagaaaaata attatacatt
     1981 ttgaaataat gatccacttc atacatttgt tcttataata agtaataata gcaaatttga
     2041 tgttcttcgt catttgttag ctttaattac cttcataatg aagtacgcag aagaaaatat
     2101 ccggaagcta ctctttgcat atctccgtcc aaatggaatt atgaagaatt cctcggcgtt
     2161 agatttacat ttctacaagg ataccaaaaa ttatatcgtt tgaaggtcgt atcttgacct
     2221 gtaggctgct tccttcttaa cctgtaagag gtacggttat taattccaga ttaattgctt
     2281 ggttattgtt ttgggttctt ctattcgtca atgtttctga catgtcatta gccggtaatg
     2341 ggcatagatt ttgagataga ttgtgggtct taatagccaa agacctatcc gacataattc
     2401 gtaattcttc tattacttca tatatagtga taccaaaaat ggttagacaa aagtttccac
     2461 gatatttctt tataaggcca ttcttaatca atctagacat cttagaataa tattgtttac
     2521 gagaaagatc gagccttcga gctagctcaa tactgttgcc gcctgacaag gctacagtct
     2581 taaatagttc aagcgaattc atatcagaca agctccttaa tacttcacct atggtgatca
     2641 atctaatgcg actccatccc atgttaagta gaatgtctac atatggattc gtagtcacaa
     2701 catggtacat ttttccattt taaggaattt aatagccgat accaaataaa ttttaaaaat
     2761 catgagtttt ctcaccttat tctccgaatt tttggaatta ttgtatccca ttgggataag
     2821 attcctcata ttgtcttatt cacaatgcta aagtaaatgc atcgcgtttt catataaaat
     2881 gtgtaggcaa atactttgca ttgacatcaa actagcttta gttcacttgg cttcttgcct
     2941 gttcgagaag ccgtggtact gtagcatcct ttgaaagatg cttaaagtac tgaatgaact
     3001 gctgagccaa acgtacgtca tcatatttcg atatagctgt ggtgaattgt tcgggatttg
     3061 cataattcac tgtctcatat gctacctgat taccatctac aactatgaaa ctaataggca
     3121 aagtgggcaa tctcttcaga tcgaatctgt tagatcgtaa tatcccactc accagatcag
     3181 aagcttccct atttggtggt gtcctaatta tggcattgag tctattttcg acactaatct
     3241 gctcaggatt gccatccaag acatgcagta gaactccgtt gccaaacttc tcaaaaactt
     3301 tgtttgaaac gttaggctgg tgatacctgg tcgcaaagta cacctctttt tcagcatttt
     3361 ccaataaatt taatacttca acgacaagag cgtcgtagtt ctttattatg ctgaacccag
     3421 ttaaatgagt tgagttgagt aggtttttca ggtcagcggt acatagaatt tcgttaacta
     3481 ttgtttcctt ttcttggaga ggaaagtcat tccgtgccct taatacatcg atacttttca
     3541 gttgccagta attagaaata gcttcttcca tagttctgac ctgagaatga aatactaaag
     3601 atccgaaagt tgttgttcta tagaatgatt cacgcttttc tatcaatccc gcatcagata
     3661 atctctttag tcgaacataa aactgctttt tacttaaatt actgacataa ttagtagaag
     3721 aagccctcat gccagaaaaa gctgctttta aaatgttaac gctatgcctg tcagccaata
     3781 tagaaaatat tagatccgtg cttacagtca cagctttctg catttaacta ccctttcttt
     3841 tttctagcaa aagtcccaat taaacttacc ggctcaatct tcattttttt tcagttatga
     3901 ggaacgaatt attgaatttc tcgaacaatg gagaaataga tgacttgtac cacgaatgaa
     3961 ctatatgttg taaaaatgcg gtacattcca aatctccata tcgaggaagg aagagtataa
     4021 ggtttcaaaa ttattacttt cattccagtg gaacaagcgt aacccgctca actttcctag
     4081 attacttagt aatttcgatg aaagtgctga tgctaaatta atggtccagc aatagaaaac
     4141 tttttcttct tccttgttcc tatattactc tactgaagtg tttacgttat tttctatagt
     4201 atgctgttcc attttgttta tctagattgg gttgcctaat ctttagcagt agagactcag
     4261 actgtacatt tgtaattaat ttggatcagc tatagcctgg ccaattcctt aaatgtgatg
     4321 acttttagct taacccgttg tctccggtcg ttggactgag attgtacttt ccctttttat
     4381 tggtcttaat tggcataata atagttatat cacacgctga attatcctat tcacaaacta
     4441 gctctaagcc agctagtgag gttgatacaa tcccgccagt tataacagtt ccaaatgatc
     4501 cagtttttga agcaacaggt cctgatggaa aagttataac atacaaggtt gtcgcaacag
     4561 atgcgataga tggtatcgta aacgttacct gtacaccgcc tttcgcctcc cttttccaga
     4621 tcggtaacat taaggttctt tgtaaggctt tagataaaaa tggtaatatt gctagtgctt
     4681 cctttacggt aaaggtacag gacactactc ctcctgacag tgctataaat gattcgagag
     4741 tcggttggtt cggaaagatc aattcaacta actccaccac atcaaacgaa attaatttca
     4801 aaatatcagg aaccgacgcc gtaggcattg atcatttcga atgtagattg gacgatggaa
     4861 aatggattag tttccagaat gatggctcgg ggaaaattga atgtcaatat ttacgcatat
     4921 ctacagggac tcacgcattt caggcgagat caatagataa atttgggaat cttgatggtt
     4981 caccagccgt ttttacttgg atagtacttc ctattaaaga aggaattcaa aatcttgcaa
     5041 aaatgactga tactactaat atgacggaaa aagaaaaatc tgatgctaat attcctctat
     5101 accaagcgtt agagttaata acaaaaaaaa ctaatgctgg aaacttgcaa atttgttata
     5161 acacagattc gttcttaaat gaggtaagct ctctctttct gaaaaataaa ctgaacgact
     5221 accagaaaaa ccaattaact gtgctagtat tatctatcaa agatcgtttg ggttgtgtct
     5281 ctattggaag ataagataaa gatactataa gtcactttgc atgattttta tgagcagctc
     5341 aaaaaataat tctagaacc
//
LOCUS       DASSIK010000351         2105 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1175388, whole genome shotgun sequence.
ACCESSION   DASSIK010000351 DASSIK010000000
VERSION     DASSIK010000351.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2105)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2105)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2105
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1175388"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..186
                     /locus_tag="VFI64_06500"
     CDS             <1..186
                     /locus_tag="VFI64_06500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242974.1"
                     /translation="FKVTVTMISSFRAEFKQFIKSPFVFQEGIVIYLYPPDAGNISII
                     ISKGFHYTVVSFILASV"
     gene            441..968
                     /locus_tag="VFI64_06505"
     CDS             441..968
                     /locus_tag="VFI64_06505"
                     /inference="COORDINATES: protein motif:HMM:NF024212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HET7242975.1"
                     /translation="MHRILLIRCLFIRIYDYQNSPGFLINRTGRIFAKSLDVELRSKV
                     GVTFGQWKIIVMLSERDGLTQKEIADKIGVEGPTLIPMIDKMEKDGFLRREADPDDRR
                     NNKIRRTQKAEVMWEKMTECVLEVRKRAMKNIRTEEVEILREVLNKICDNLGEWESKL
                     QHTNNYLVKELKSPN"
     gene            1018..>2105
                     /locus_tag="VFI64_06510"
     CDS             1018..>2105
                     /locus_tag="VFI64_06510"
                     /inference="COORDINATES: protein motif:HMM:NF012312.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HET7242976.1"
                     /translation="MKISKDNPRAYEDEDSMSSLSTSSSLSRSTAASDQSGKIPLYAW
                     KTLGILSCIATMVMYAETMLIPAIPDLISHFHVSYTMSSWVLTAYLVSGAVMTPIAGK
                     LSDIYGKKKILLIVMLVYAVGVSIAGLAPTFELMLLARAIQGIGMSMFPIAFSIVRDQ
                     FPRAKISIGQGVITSMFASGAIIGLIVGGFIIQNYGWQATFFTIIPIAFALLFVIRKY
                     ITIGSNIEGSSEVSIASQDTAIVNSEIKNQERKMKDSNSAGTNTTDESRRIDILGAVT
                     LAITIISLLLSITLFETSAGNGSLGANMDQNIIEGPLGLSSSEIWLTTLVVVGVVSSV
                     VFVIVERRAKNPLVDFRLLFDKVVLPAN"
BASE COUNT          667 a          376 c          450 g          612 t
ORIGIN      
        1 ttcaaggtta cagttaccat gattagtagt tttagggcgg agttcaaaca attcataaaa
       61 tcaccctttg tgttccagga gggaatagtc atttaccttt atccaccaga cgccggtaat
      121 atatcgataa taataagcaa gggttttcat tatacagtag tgtcatttat ccttgcctca
      181 gtatagtcca tatatccttg acctaccttt tatgatggta ttaatatctt ctaagtaaat
      241 tgtcccattt ttcttcaaat gagttgtagc cagtaagagc taccatattt ggttatgccc
      301 ctgatccagg tggcgcttaa ctgaggatat tgtccgtatc atctcataca gagaatggcg
      361 actgcgttac tataaatgat aatgtcacaa taacatttta cctgccatta tttttcagga
      421 ccagatacat ttaaatgtaa atgcatagga tactactaat taggtgttta tttattagga
      481 tatacgatta tcagaacagc cctggttttc taatcaatag aactggcaga atatttgcca
      541 aatcccttga tgtagaatta cgaagcaagg tcggagttac ctttggacag tggaaaataa
      601 ttgtcatgtt atcagagcga gacggcttaa cgcaaaagga aattgcagat aagattggag
      661 tggaaggacc aaccttgatt ccaatgatag acaagatgga aaaagatgga tttctaagac
      721 gggaagcaga tcctgatgat agaagaaaca acaagattag acgtactcag aaggcagaag
      781 tgatgtggga aaagatgact gagtgtgttc tagaagtgag aaagcgggct atgaagaata
      841 ttagaaccga agaagttgaa atcctacgcg aagttctaaa caagatatgc gataacttag
      901 gggaatggga atcgaagctg caacacacta ataactatct cgtgaaggag ctcaaatccc
      961 caaactgaat gttgaaaaat agaagatagg acaaggggac aggtgaataa atgaaatttg
     1021 aaaatatcca aagataaccc cagagcgtac gaagatgaag attctatgag ttccctatct
     1081 acttcatcat ctctttcccg ctctaccgct gcttcagacc aatcaggaaa gattccactg
     1141 tacgcatgga aaactcttgg aatattgagc tgtatagcaa ccatggtaat gtatgctgaa
     1201 acgatgttaa tacctgcaat tccagacctt atcagtcatt ttcacgtttc ttatacaatg
     1261 tcgtcatggg ttcttaccgc ttatcttgtg tcgggggctg taatgacacc tattgcagga
     1321 aagctttctg acatatacgg aaagaaaaag atactgttga tagtaatgct agtctacgct
     1381 gtgggtgtgt caattgcagg attggctcca acttttgaat tgatgttatt agctagggca
     1441 attcagggga taggaatgtc gatgtttcca attgctttta gcattgtcag ggatcaattt
     1501 ccaagagcaa aaatatcgat tgggcagggc gttataactt caatgttcgc ctctggtgct
     1561 attattggac taatagtcgg aggctttata atccaaaact atggatggca agccaccttc
     1621 ttcacaataa ttcccatagc ttttgcactg ctatttgtga tacggaaata tatcactatc
     1681 ggcagcaaca ttgaaggttc aagtgaagtt tcaatagcaa gtcaagacac tgccattgtc
     1741 aattcagaaa ttaagaatca ggagagaaaa atgaaagaca gtaatagtgc agggacaaat
     1801 acaacagatg aatcaaggcg cattgatatc cttggggcag taacgttggc cataacaata
     1861 atatctcttc tcctttctat caccttattt gagacctctg ctggcaacgg atctttaggt
     1921 gcaaatatgg atcaaaacat aattgagggt cctctgggct tgtcctcatc tgagatctgg
     1981 ttaactacat tagtagtagt cggagttgtt tcgtcggtag tctttgtcat agtggagaga
     2041 cgagcaaaga atcctctagt agattttagg ctcttatttg acaaggttgt acttcctgca
     2101 aactt
//
LOCUS       DASSIK010000352         2320 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1255344, whole genome shotgun sequence.
ACCESSION   DASSIK010000352 DASSIK010000000
VERSION     DASSIK010000352.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2320)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2320)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2320
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1255344"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(201..827)
                     /locus_tag="VFI64_06515"
     CDS             complement(201..827)
                     /locus_tag="VFI64_06515"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004784 - superoxide dismutase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HET7242977.1"
                     /translation="MKKYELPAVPYPYDALEPHIDAKTMEIHHTKHHQAYTDKLNAAL
                     EKCPPEIQEKDIVEILSSIDKVPAEQRSAVNFNGGGFDNHRIFWNNMKSNGGGEPTGT
                     IADAIKTSFGSFSDFKEKFSSTTAVIQGSGWGWLVYNPSTNKVEYKSMPNQTSPRTEG
                     LIPLLGCDVWEHAYYLKYQNKRPDYISAWWNVINWDDVSARYDKSKGK"
     gene            987..1442
                     /locus_tag="VFI64_06520"
     CDS             987..1442
                     /locus_tag="VFI64_06520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32e"
                     /protein_id="HET7242978.1"
                     /translation="MVINKDLLQTRKKVSRTRPKFVRQESWRYDRLAPNWRKPKGKDN
                     KMRLQVSGVPRLVKIGYRGPRSARGLHPSGYIEVMVFNKNDLAKIDPGKDAVRIGRTV
                     GRRKREEIMAEALRMKLKVLNPRKAKGEQIKPEVEQTTKQESEPNEANS"
     gene            1442..1900
                     /locus_tag="VFI64_06525"
     CDS             1442..1900
                     /locus_tag="VFI64_06525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19e"
                     /protein_id="HET7242979.1"
                     /translation="MVVNLRKKRELIARILGLGLNRVRFEPDKLEDVGDAITREDMRS
                     LIKNGTIWTVKEKGTSRARAEAKRKTRHKRGLASGSKKGKKTARTGKKEVYVAKVRSL
                     RRHLRVLKDRNDISREVYWVMYKKIKGGQVRSSSHLRELAKQARSHSSTT"
     gene            complement(2048..>2320)
                     /locus_tag="VFI64_06530"
     CDS             complement(2048..>2320)
                     /locus_tag="VFI64_06530"
                     /inference="COORDINATES: protein motif:HMM:NF016312.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA];
                     GO_function: GO:0051499 - D-aminoacyl-tRNA deacylase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-aminoacyl-tRNA deacylase"
                     /protein_id="HET7242980.1"
                     /translation="PDYCKKVAIGLGGTHYPTKFNKLLLESEYGLGSVAARHNLPLVE
                     ESMLKQMISRSIEDVSCVVIDAKGMGGEKHRLLPLIEKTGLELVKL"
BASE COUNT          695 a          456 c          485 g          684 t
ORIGIN      
        1 tttcaatatc ttaattgtaa tacatcatta tttcataatg gcttgatctc aaaaacccaa
       61 atctttgcac tcttgcaccg ctaattacaa aaagctattt tcttcctttt ctcataaacg
      121 tccggcaggt tcgattaagg gataataaaa aataagtcaa acaaatggtg gaccagccat
      181 cattcgtaga ctatatttag ctattttcct ttcgacttat cgtatctagc agacacatcg
      241 tcccagttta taacattcca ccatgcggaa atgtaatcag gtcttttatt ctgatacttt
      301 agataatagg cgtgttccca tacatcacat ccgagaagag ggatcaaccc ttcggttcgt
      361 ggacttgttt gatttggcat tgatttgtat tcaactttat tggtagatgg attgtagaca
      421 agccatcccc aaccgctgcc ttggatcact gcagttgtgg aagaaaattt ctctttgaag
      481 tctgaaaaac ttccaaaaga tgttttaatt gcatcagcta tagtcccggt tggttcacct
      541 ccaccgttcg atttcatgtt gttccaaaat attcggtgat tgtcaaaacc tccaccatta
      601 aaattgacag cacttctttg ttcagcagga actttgtcaa tagatgataa tatttcaact
      661 atgtcttttt cttgaatttc aggaggacat ttttcgagtg ccgcatttag tttgtccgtg
      721 taagcttgat gatgtttcgt gtggtgtatt tccattgtct ttgcatcaat atgcggttct
      781 aatgcatcat atggatacgg aaccgcgggt agctcatact ttttcatgca ttgttctaat
      841 cttcgaaatt attaattctt gcgctacctg atcttggttt aatacgaact acgcttatct
      901 ctctgaaggt ttctcccttt agttgggttc taaacgccct agaaacgttt ttatttaaaa
      961 ctggtcactt tgacactgca agatttatgg ttataaacaa ggatctactc cagacaagga
     1021 agaaagtatc tcgtacacga ccaaaatttg tacgacaaga aagctggaga tatgatcgtc
     1081 tagcacccaa ttggaggaag cctaagggca aggataacaa gatgaggctt caagtgtcag
     1141 gcgtccctcg attggttaag ataggttaca gaggcccacg atctgccaga ggattacacc
     1201 cctcgggcta tatcgaagtc atggtcttta acaagaatga cttggcaaaa atcgatcctg
     1261 gcaaagacgc ggttcgaatt ggacgtaccg ttggaagaag aaaaagagaa gaaataatgg
     1321 cggaagccct cagaatgaag ctaaaggttt tgaatccacg taaggcaaaa ggagaacaaa
     1381 tcaagcctga agtagaacag accactaaac aagaaagtga accaaacgag gcgaactcct
     1441 gatggtcgta aatctcagaa aaaaaagaga gttaatagct cgtatactgg gtctagggct
     1501 caatagagta agattcgaac ctgacaagct tgaggatgtc ggtgacgcga taacgcggga
     1561 agatatgcgc tcgttgataa agaatggtac catatggacg gttaaagaaa aaggaacgtc
     1621 gagggcgaga gctgaagcga aacgaaaaac acgacataag cgtggcctgg cttcaggttc
     1681 taagaagggc aagaaaactg ctagaactgg taaaaaagaa gtctatgtag ctaaagttag
     1741 atctttaaga cgccatctca gggtgttaaa ggatcggaat gatatcagca gggaagtgta
     1801 ttgggttatg tacaaaaaga ttaagggcgg tcaggttcgc tcttctagtc acttgagaga
     1861 actagcaaag caagcgagat cccatagttc gactacctaa caatttttaa tttcgctcgt
     1921 ctcgaattct attatacggc taccgctgtt ttcataccct cattttctat tagcttcgca
     1981 aagtacaggt aatcaatttt ggcaaggtct ttcacatttg ggtggtcaga ttcattattt
     2041 tatgcgtcta taacttgaca agttcaagtc ctgttttttc tataagcggc aagagtctat
     2101 gcttttcacc acccatcccc ttagcatcta ttacaacaca agaaacatct tcaatactcc
     2161 gagatatcat ttgtttaagc attgattcct cgacaagcgg gagattgtgt cttgcggcta
     2221 ctgagcctag gccgtattct gattctaaaa gaagtttatt aaatttggtt ggatagtgtg
     2281 ttccacccag gcctattgct acttttttac agtaatcggg
//
LOCUS       DASSIK010000353         3054 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_667219, whole genome shotgun sequence.
ACCESSION   DASSIK010000353 DASSIK010000000
VERSION     DASSIK010000353.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3054)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3054)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3054
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_667219"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..454)
                     /locus_tag="VFI64_06535"
     CDS             complement(<1..454)
                     /locus_tag="VFI64_06535"
                     /inference="COORDINATES: protein motif:HMM:NF020398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1802 family protein"
                     /protein_id="HET7242981.1"
                     /translation="MIAALKEWSVVCRALEDGRQVVLLRKGGVLEYRQGFEIKHESFW
                     LYPTLEHQSREFIQPDYVEKMDDLLNGNPSKHVTIKSYAKVERIYEIRNKSFLPMLRR
                     YHIWNDKYVQMRMNYNPTKPLNALLLRVYKLDQPMSLEIMPEWSGCKSW"
     gene            complement(458..1195)
                     /locus_tag="VFI64_06540"
     CDS             complement(458..1195)
                     /locus_tag="VFI64_06540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chlorite dismutase family protein"
                     /protein_id="HET7242982.1"
                     /translation="MSVHESSRKGSFEKNIETRDAKASTSTLYLNFSFYKIDPKWRWL
                     NDIGKEEAAKEFAMLIETARSKMKVETYSTMGLRKESEFMIWMISDTVEKMQILTSKI
                     YSTVIGKYIDISELYLSAARPSAYSSSLIPSFMTDNKPMKYNVVYPFIKSREWYLLPF
                     EDRKKMMDEHIAVGRKFPQIRLNTSYSFGLGDQDFMLAFETENLKDFQDLIVKLRETQ
                     VSRYVVKDTPMLVCVYKDVEAIIKSLG"
     gene            complement(1331..2053)
                     /locus_tag="VFI64_06545"
     CDS             complement(1331..2053)
                     /locus_tag="VFI64_06545"
                     /inference="COORDINATES: protein motif:HMM:NF013175.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242983.1"
                     /translation="MPYVDGLFSVVHKISNEAKNGSLLSIESTIPSGTSRKVFELLDH
                     RLHVVHAPHRWYALDEDTHGVNQLRVIGGVCECCLRTGIRFYDSNSGNPRVAQDFIEG
                     FEADSKRNIETMGIPMHPVSNVELAELTKIIENADRYLQIAFAEELYLYCQANHINFP
                     ELKDALNTKWNVNILEPREGIGGHCVPKDTKMFLDSSRGIKSKILQAALNVDQDYRRF
                     RQIRDKQYQSDSPINDKQILSS"
     gene            complement(2108..2329)
                     /locus_tag="VFI64_06550"
     CDS             complement(2108..2329)
                     /locus_tag="VFI64_06550"
                     /inference="COORDINATES: protein motif:HMM:NF015411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HET7242984.1"
                     /translation="MELSLTEKTNMTGHSDQKTSFFNKVVVIGLGQLGLPVAKYVKER
                     GFDVYGYDINAFTMDRAETEFGIKKITDF"
BASE COUNT          919 a          589 c          528 g         1018 t
ORIGIN      
        1 tccatgattt gcagccagac cattcaggca tgatttcaag actcattggc tggtcaagtt
       61 tgtaaacacg aagaagtaat gcattaagag gtttggtcgg gttataattc atccgcatct
      121 gaacgtattt atcattccaa atatgatatc gtcggagcat gggaagaaat gatttatttc
      181 ttatttcgta gattcgttca acctttgcgt aagattttat tgttacatgt ttgcttggat
      241 tgccattaag taaatcatcc attttttcta cgtaatcagg ttgaatgaat tcccttgatt
      301 gatgttccaa agtaggatag agccaaaaag actcatgttt gatttcaaat ccttgtctgt
      361 attctaaaac tccacctttt cgaagcaata ctacctgtct gccatcttca agtgccctac
      421 atactacact ccattcctta agcgctgcga tcattcttca acccagactc ttaataatgg
      481 cctcaacgtc tttataaaca caaactaaca ttggcgtgtc tttaacaaca tacctgctta
      541 cttgagtctc acggagcttt acaatcagat cttgaaaatc cttcaaattt tcagtctcaa
      601 atgccaacat gaaatcctga tcacctaggc caaacgagta tgaagtatta agtcggattt
      661 gaggaaattt tcttcctact gctatgtgtt catccatcat cttcttacga tcttcaaaag
      721 gtaacagata ccactccctc gatttaataa atgggtacac aacattatac ttcattggtt
      781 tgttatcagt catgaatgat ggtataaggc tactagaata ggccgaaggc cttgctgccg
      841 ataaatataa ctctgaaata tcaatgtatt ttccaattac tgtggagtaa atctttgaag
      901 tcaatatttg cattttttca acagtgtctg agatcatcca tatcataaat tcagattcct
      961 ttcggagtcc catggtagaa tatgtctcta ccttcatttt tgatctagca gtttcgataa
     1021 gcatagcaaa ctctttagca gcttcttcct tacctatgtc attaagccat ctccatttgg
     1081 gatctatctt gtaaaatgaa aaattaagat ataatgtgga cgtgcttgcc ttggcatctc
     1141 tggtctcaat atttttttca aatgaccctt tccttgatga ttcgtggacc gacataagat
     1201 tcaggataat tatagaatat ttaaaactaa atccagtatg gatgagaagt agagaaatat
     1261 ggcctaatca ttatagaatc agttattttc aaataatatt cttgcgacag tcttatttga
     1321 acgaaggtta tcagctggat aagatctgtt tatcgtttat cggagagtca gattgatact
     1381 gcttgtccct tatctgtcta aatcttctgt aatcctgatc cacatttagt gctgcttgca
     1441 aaattttact tttgatgcct ctagacgaat ctaaaaacat cttcgtatct ttcggaacgc
     1501 agtgaccacc tattccctct cttggttcaa gtatattcac attccatttt gtattgagtg
     1561 catccttcaa ctccggaaaa ttgatgtgat ttgcttgaca gtaaaggtac agttcctctg
     1621 caaatgcaat ttgtagatat ctatctgcat tttcaattat ttttgtcaat tcagcaagtt
     1681 ctacgttaga aactggatgc atgggtattc ccatagtttc aatattcctc tttgaatcgg
     1741 cttcaaagcc ttctatgaaa tcttgggcaa ctcgaggatt gcctgaatta gaatcataga
     1801 atctgatacc agtacgtaga caacattcac atactccccc tatcactctg agctgattta
     1861 ccccgtgggt atcctcatcg agtgcatacc atctatgggg agcgtgaacc acgtgaagtc
     1921 tgtgatccaa cagctcgaac acttttcgtg aagttccgct agggattgta ctttctattg
     1981 aaagaagact gccatttttt gcctcattgg atatcttgtg cacgactgaa aataatccgt
     2041 caacatatgg cacaaatata tcatcaggct tatgagttga tacacaaatt ataaacacgt
     2101 caatgtctta aaagtccgtt atcttcttta tgccaaattc tgtctcggca cggtccatcg
     2161 tgaatgcgtt aatatcatag ccataaacat caaatcctct ttcctttaca tattttgcta
     2221 caggtaaacc aagttgacct aagcctatga ctactacctt attaaagaaa ctcgtttttt
     2281 gatctgaatg tcctgtcatg tttgtctttt ccgtcagtga tagctccatg gcgtatttta
     2341 ttgtattaat aggtatctaa tgatatcgtg taatgattag tgaagaatat tttattataa
     2401 aattattgac tcaacgttag tatgcaacgt aggttacatt gataggtaac tcttctctac
     2461 tatgattcta aaagaacaat cccaagttct ttgaagttct agaaacttcc attatgacga
     2521 tacttataag ttgtgaaaaa tggcaacaat ttttccgaga ttctcgtact cgcaagttag
     2581 attgatacaa aattacaggg cattcgttat ttgtgacacg tgttactatg aaacgtagct
     2641 ggaggaaatc atcagtatgt gcagataagc aacggacaag aaaaaaagca agtgctggcc
     2701 actagagttt aacgtataat ttttaggcaa aacatgattt aataacttat tatccggagc
     2761 atcttcgtgg ctaaaacact ttcaaatcaa gtattgaaaa ctaatgaaaa ggcttaccca
     2821 tttaagctaa aaggcgtaga tggtaaaatg tcttcttgaa gatttcaatt gtaaatgtgc
     2881 ccttgttgtt ttcatatgaa accattgtcc atacgtaaag gcgtgcatta acgatctaaa
     2941 aaatttgcag aatagttttg ctacctcgga attggaggta gtaggaatta acagcaatga
     3001 ttctggctat ccagacgagg gattcgataa tatggtcaag ttcgcagaaa aata
//
LOCUS       DASSIK010000354         4907 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1255401, whole genome shotgun sequence.
ACCESSION   DASSIK010000354 DASSIK010000000
VERSION     DASSIK010000354.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4907)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4907)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4907
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1255401"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1490
                     /locus_tag="VFI64_06555"
     CDS             <1..1490
                     /locus_tag="VFI64_06555"
                     /EC_number="5.6.2.-"
                     /inference="COORDINATES: protein motif:HMM:NF013311.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DNA topoisomerase"
                     /protein_id="HET7242985.1"
                     /translation="RYSNFTIGRVQGPTLSFVVQRQTEINRHVPVPYWNVSAELNKGD
                     NVFNATYWPKTIQTYEKATKIVDDCRYKDVVTNEVRIQKKKIYPLAAFNLGQLQKEAY
                     RIFKIQPNITLSAAESLYLSAFISYPRTSSQKLPTSIRYRDILAKLAKNYIEYHDNAN
                     SLLLKDKLFPTQGIKDDPAHPAIYPTGEKSIKLNSITGKIYDLIAKRFLAAFGSVALI
                     QNSTILFDVAGHSFTAEGRNVLNEGWIYYYKPYFRISESELPDIRKGDIVHVQKITKV
                     KKFTKPPLRFNQATLLETMEREGIGTKSTRAEIINTLIKRRYIIQESSGFVATEIGSA
                     VINAMTKFIPSVISTDLTRTFEEDLEGIETGKIPDKNVIAKAVDTLETAIMKFKASEL
                     LIGQELNDAVEKTSKDSSIVGVCPICKCGKLLIIKSLKSRKRFIACSQYRMTGCSASA
                     PLPQTGKLMKSKYACSICRWPIMIRIFGRNKPWKFCVNSKCESKN"
     gene            complement(1535..2383)
                     /locus_tag="VFI64_06560"
     CDS             complement(1535..2383)
                     /locus_tag="VFI64_06560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HET7242986.1"
                     /translation="MKKSYKIALVQMKSSTIKSENLKLSVDYIRQAAKKKVELVCFPE
                     FQMAYSPLEQTAKELSTIAENAINGNFITTLRKEAKRHRIKIIATIYENINTKRKKKT
                     DYRVSDTAIMISEKGDVMSIYRKLHLYDALGFKESAKLVGGDKIERPVKVGIGKIGLE
                     ICYDIRFPEMSRILTLDGADVLAIPSGWVQGIMKEEHWQIMLKARAIENGCYVIAPDQ
                     VGNIFSGQSMVIDPFGITLLDMGNKEGVEVAEIARDRVESVRQSLPLLKNRRTDVYLD
                     HISSFI"
     gene            complement(3192..3794)
                     /locus_tag="VFI64_06565"
     CDS             complement(3192..3794)
                     /locus_tag="VFI64_06565"
                     /inference="COORDINATES: protein motif:HMM:NF024724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HET7242987.1"
                     /translation="MNWNLNEFTKNAFAKLVKEFEENTDDVVKITKAFSTAADFHSGQ
                     SRDGSKEPYINHPLKVALILSDELKVRDVDMICAALLHDILQKGNNSDTDKLDQIKRN
                     FGENVYNLVQTLTEHPSTNDNRQQSLESYFQSISKSPKTLRVVELADRLDNVRFFKNA
                     VKKDKAIRYKEETQKYVVPIAEQTDESLAFKLSVALYEIK"
     gene            4113..4853
                     /locus_tag="VFI64_06570"
     CDS             4113..4853
                     /locus_tag="VFI64_06570"
                     /inference="COORDINATES: protein motif:HMM:NF037015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig-like domain-containing protein"
                     /protein_id="HET7242988.1"
                     /translation="MPVIISRGIAHVKRSNGLYKFPLLIVLAITFLVLTSLAVSHEQT
                     PLPAAPTVKITSPTDGDKVSLSGNLTITGTSSDNNSTNCQVAVIVNDVKPYQASIPTG
                     PKGYSDYSQWKFTLGPNYTSLKEGQNKITSRAMCPGNGTELTKWFGINVTGVTRMPPE
                     TTNSTSTQQDNNSAKSSGPVYSYSQHKNTSKDLSTAAEGQNQNDVVQSQDDGVDAVKN
                     KKTQSTQPTSSNNQTQQATDFIPPFTTP"
BASE COUNT         1487 a          964 c          923 g         1533 t
ORIGIN      
        1 aaaggtatag caattttacc attggaagag tacaaggacc cactttatcg tttgtggtac
       61 aaagacagac ggaaatcaat cgtcacgtgc ccgttccata ttggaacgta tctgcagaac
      121 ttaacaaagg agataatgta tttaatgcta cttactggcc aaagactatc cagacttatg
      181 agaaggcaac aaaaatagtg gacgattgca ggtataagga cgtagtgact aatgaggtac
      241 gaatccaaaa aaagaagatc tatcctctag ctgcattcaa cctcggtcaa ttacaaaaag
      301 aggcttatcg tatttttaaa atacagccaa acataaccct gtccgcagcc gaatcgctct
      361 atctttctgc gttcatttct tatccccgta cttctagtca gaaattacca acatcaatac
      421 gttacagaga tattctggca aaacttgcaa aaaattacat cgaatatcat gacaatgcaa
      481 attcattact cctgaaagac aagctatttc ccacacaagg catcaaagat gatccggctc
      541 atcctgcaat atatccaacg ggtgaaaaat caattaagtt gaacagtatc acaggcaaga
      601 tttatgattt aattgcaaag agatttcttg cggcttttgg gagtgtggca ttaattcaaa
      661 attctacgat actgtttgat gttgctgggc attcatttac ggctgaaggt agaaatgtat
      721 tgaatgaagg atggatctat tattacaaac catattttcg tatttcggaa tcagaattac
      781 ctgatataag aaagggtgac atagttcacg ttcaaaagat taccaaggtc aagaaattta
      841 ccaaacctcc acttcgattc aatcaggcta cattattaga aacgatggaa cgtgagggga
      901 taggaacgaa atccacaagg gctgaaatca taaacacgtt gataaagcgg agatatatta
      961 ttcaagaatc ttcaggattt gtggcaacag aaatcggttc tgctgtaatc aacgcaatga
     1021 ccaaattcat tccttctgta atatcaaccg atttgactag gacgtttgag gaggaccttg
     1081 aaggaattga aactggaaag atacctgaca agaatgttat agccaaagct gtcgatacac
     1141 tcgaaaccgc tatcatgaaa tttaaagcaa gtgaattgct gataggacaa gagctcaatg
     1201 atgctgtaga gaaaacaagc aaggatagtt caatagtggg tgtctgtcca atatgcaagt
     1261 gcggtaagtt gttgataatc aagtcattga aaagcagaaa aagattcatc gcctgctctc
     1321 aatacagaat gactggttgt agcgcttcag ctccacttcc ccagacgggc aagctgatga
     1381 aaagtaaata tgcttgttca atatgccgtt ggcctattat gattcgcatc tttggaagaa
     1441 ataaaccctg gaaattttgt gttaactcta aatgtgaatc aaagaattga tgagttgtat
     1501 cgaaagattc caagagcatg tagtaaagtc tgtatcatat aaacgagctt atgtggtcaa
     1561 ggtatacatc agttcttctg ttcttcaata aaggcaatga ctgcctaaca gattcaacac
     1621 gatctcgagc aatttcagct acttcaactc cttctttatt acccatgtcg agtaacgtaa
     1681 tgccaaaggg atcgataacc atactttgtc ccgaaaatat gtttccaact tgatctggtg
     1741 caattacgta gcatccattt tcaattgctc tcgctttcag cattatctgc caatgttctt
     1801 ccttcatgat accttgtacc caaccagaag gtattgccaa tacatcggca ccatctaagg
     1861 tcaatattcg cgacatctct ggaaatctta tatcatagca tatctccagt ccgatttttc
     1921 caatgccgac ttttactggc ctttcgattt tatctcctcc aaccaattta gcagattctt
     1981 tgaatcccag tgcatcgtac agatggagtt ttctgtagat tgacattaca tctcctttct
     2041 ctgatatcat gattgccgta tctgaaacac gataatcagt ttttttcttt cttttggtat
     2101 ttatattttc atagatcgtt gcaatgattt ttattctgtg cctcttagcc tctttccgca
     2161 gcgttgtgat aaagttgcca ttaatagcat tttctgctat tgtcgacaac tcctttgcag
     2221 tttgctctag aggagaataa gccatttgaa actcaggaaa gcatactagt tcaacttttt
     2281 tcttcgcggc ttgtcgtatg tagtcaactg agagtttaag gttttcactc ttaatagtcg
     2341 aagatttcat ctggactagt gcaattttgt aacttttttt cacgtggtgt gcaccgcgta
     2401 tattgttgat tgattaacgt caggttaata atttaaaagt ctatgtttgt tttttgttca
     2461 tgttaagtaa aggcacaatc aatattttca atgctctgac caacttcgaa attcagtctc
     2521 cagaaatagt tcaaattcaa ttttgccaca tgcgtgaact ggtcctcttt tacccactga
     2581 tgtttgaaaa atctgcacat attcaagctt tatcttgaga gtcaaacatc cttttcagcc
     2641 aagtagacct tcttttttat cgagtatccc ctctgttctg taaagaacaa attcttaccg
     2701 caaatggtgc aacagatttg tttgtcaagt acctccattt caagttcgta gtggctgcaa
     2761 cgaatttgaa actcacgttt tacggactcc atatccctta ttgtctttat gtttcgtgtc
     2821 gagttttcag ccaactttgt ctgattgtga tgatacccag tctattatca ttcttttgac
     2881 aaaatgagag attgaagagt tagttcggat ctactattag ttgttgaact aggagcactt
     2941 ttgaaatata tattctcgcg agtaaggaaa gtgtagataa tattcaaagg tatagcagaa
     3001 tgattttgat ttctgcagtt actgcgaaat ttcatattag agaggggaca aacttacgtt
     3061 gtgataaatt gtcctatatg tggatgttct gaacataagt tgttcggctg cgcaaaacat
     3121 tgggctcacc ataagaaaaa caaagagggt ttgtgtgaac aaaaaaactc ctagttccgc
     3181 tttctgctat tttattttat ctcgtatagc gctaccgaga gcttgaatgc aagagattcg
     3241 tcggtttgtt cggcaattgg aacgacatac ttctgagttt cttctttgta ccgtattgct
     3301 ttgtccttct taaccgcatt tttaaagaat cgtacattgt ccagtcgatc tgctaattca
     3361 acgactctca atgtctttgg acttttagat atactttgaa agtatgattc taaggattgc
     3421 tgtcggttgt cgttagtact ggggtgttcg gtcagagttt gtactaaatt atacacattc
     3481 tcaccaaaat ttctctttat ttgatcaagc ttatccgtat cggaattgtt acccttttgt
     3541 agaatgtcat gaagcagtgc ggcgcatatc atgtccacat cccgaacttt aagctcgtcg
     3601 gacaaaatga gagcgacttt cagcggatga tttatgtacg gttctttgct tccgtctctt
     3661 gactgacctg aatgaaagtc cgcggctgta ctgaaggctt tagtaatctt aacgacgtcg
     3721 tcagtatttt cctcaaattc ctttactaat tttgcaaaag cattttttgt aaattcgtta
     3781 agattccagt tcatagaaag tattcactag tatattgtaa actaataatc aagtcactta
     3841 aaagaattat tgattcgtct gaacgtagta tgtggttgaa ccgttactaa ggcaatcaat
     3901 ttatcataag aaaacgagat tccctacatg aatcggagtt gttgcgcttg tcctttctaa
     3961 taaaaaacat tgaataacaa gtcggagata atatccacgg tatagggcta atttcgacct
     4021 atttatcggt tggagataaa ctggttgtac gtatgatctt gagctattct tgtctacgct
     4081 tttttaatca aaactaaact atttccaact cgatgccagt tataatatcg cgtggaatag
     4141 ctcacgtgaa aagatcaaat ggtttataca agttcccatt gttgattgtc ctcgcgatta
     4201 cgttcttagt tttgactagt ttggctgtct cgcatgaaca aacacctcta cccgctgccc
     4261 ccaccgttaa gattacatca ccaactgatg gggacaaagt gtcattatca ggaaatttaa
     4321 ctattactgg tacctcatct gacaacaatt ctactaattg tcaagttgct gtaattgtta
     4381 acgacgtcaa accgtatcag gcatctattc ccacagggcc gaagggatat agcgattatt
     4441 cccagtggaa gtttactctg gggcccaatt acactagtct aaaggaagga cagaataaga
     4501 ttacttctag agcaatgtgt cctggaaacg ggacagagtt aactaagtgg tttggcatta
     4561 atgtaactgg agtaacacgg atgcctccag agactacaaa ctccacgtca actcaacaag
     4621 acaacaatag cgctaaatca agtggacctg tttattctta ttcgcagcac aagaatacaa
     4681 gtaaagacct atcaactgca gccgaaggac aaaaccaaaa tgacgtggtt caaagccaag
     4741 atgatggagt ggatgcagta aagaataaga agacacaaag cactcaacct acttcttcga
     4801 ataaccaaac acaacaggct accgatttca tccctccgtt cacgacgcct tagttttcat
     4861 tctcatggct atttttgact aacttgtggt ccgatgaacg agttacc
//
LOCUS       DASSIK010000355         3481 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1370135, whole genome shotgun sequence.
ACCESSION   DASSIK010000355 DASSIK010000000
VERSION     DASSIK010000355.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3481)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3481)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3481
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1370135"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            648..1721
                     /gene="speY"
                     /locus_tag="VFI64_06575"
     CDS             648..1721
                     /gene="speY"
                     /locus_tag="VFI64_06575"
                     /EC_number="2.5.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyhypusine synthase"
                     /protein_id="HET7242989.1"
                     /translation="MNKVHSFTGKKIEPPIISPRMTVSDMIKFFSATGYNARRLAEAA
                     QITKQMIKNDATICLTLAGAMTPIGLGRTISTMIEYGFIDWIVTTGANVYHDLHFAYD
                     LPVRQGHFQVDDDVLYSKQIVRIYDIYIKEVGTLQAQDIIVQRDLRNQQRELPISPST
                     SDISYALGKAALENSAHPEKSFMVAAYKHNVPIYMPAIGDSSIGLNMLPLLLERSEDR
                     LPNVILDVAESAAILWKSNISGGIELGGGVPKNFFQQTGPALYQILKMKEGGQDYIIQ
                     ITDARSDTGGLSGATLQEGKSWGKIRTSHEGNVIVYGDSSVCFPILCSYALSECKKRT
                     RKQIYKSKNRWLEEMRNVYLKKR"
     gene            complement(1810..2415)
                     /locus_tag="VFI64_06580"
     CDS             complement(1810..2415)
                     /locus_tag="VFI64_06580"
                     /inference="COORDINATES: protein motif:HMM:NF034126.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exosome complex RNA-binding protein Csl4"
                     /protein_id="HET7242990.1"
                     /translation="MNKETKTSTVFPGEQVAEIEEFEAGKNTFVSGGAIRSSVMGNKQ
                     YDLKRRIVRIDQKKSLIMPKIGDVVVGYIEMLFGPMISVKLLYLNGKVFSAGFSAIAS
                     TRLNGRGWNRDRGERRGKITFRVGDIIRGRVISLLNSTIHITIEDKEYGVLYTLCNLC
                     GGDTVRVNSAVKCIECGSYEERKLTNDYGKEALRAAKSIQN"
     gene            complement(2548..2892)
                     /locus_tag="VFI64_06585"
     CDS             complement(2548..2892)
                     /locus_tag="VFI64_06585"
                     /inference="COORDINATES: protein motif:HMM:NF016798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUN14 domain-containing protein"
                     /protein_id="HET7242991.1"
                     /translation="MNFDLGNLATSVGIGGGLGFLVGYAVKKIFKIILVLAGLSIATL
                     SYLQFQGIVAVNWDKLDSAARGTLTGFNATSQFPAVAPALGEQILTAMSNSGIPLTGG
                     LAAGFAFGFSRG"
     gene            complement(3159..>3481)
                     /locus_tag="VFI64_06590"
     CDS             complement(3159..>3481)
                     /locus_tag="VFI64_06590"
                     /inference="COORDINATES: protein motif:HMM:NF013209.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HET7242992.1"
                     /translation="GMEGKVYFDPRFKRLLWYLIGTTKGGVTRARILEMLNFRPSNTN
                     QIASELRLDYKTVVHHLEILSKNGLVITDNRDEYGATFFLTPLMEKNYSAFQEILSKI
                     SVSR"
BASE COUNT         1029 a          731 c          660 g         1061 t
ORIGIN      
        1 gactcacttt tgattctatg ttagaaagga gctctcctac ttccttggca gtggaacttg
       61 ggactaggtc cgccaaattc cattttccta atttcactgc atcgtaagtt aacatagtca
      121 tttcgtttga caaatgtttg atttatctcg tctattattt attttgcatc ttacgtcttg
      181 ctaatccctt ttttctgttt agacttcttg aaaaattgat agtagcatgg tgtccatcag
      241 tgtatggatg agttcgaaaa gctcttgcag atgaactaag gaagaaagac agttagttgt
      301 acctcgacat cgggcataaa gtattcttga gtgaaagata agaacaggaa cattgtagat
      361 gagcattaat gatgatatcc ggtcagagcc aatatccgcc gactttttga tattaagaag
      421 gatacagcta tggttatata tgaccacttc gtaatttata atcccttaat cgggtttcag
      481 catggaacgc aagggaatgg gcaaacaata tgcctgctct gaataggact ttcctgtgga
      541 caggtttgca gatgccttcc tattctatgt tgacttttgg acttgtttat tctggtatgc
      601 gattggcgat aggatagtat ttttaatacc ttcaatagaa atgtagagtg aataaagtcc
      661 atagttttac tggcaaaaaa atagagcccc ctattatttc tcctcgtatg acagtttcgg
      721 atatgatcaa attttttagt gcgacaggtt acaatgcacg ccggctggct gaagccgcac
      781 aaatcaccaa acaaatgatc aagaacgatg ctacaatctg tctaaccctt gctggtgcaa
      841 tgaccccaat cggtttggga aggactatct ccactatgat tgaatatggt tttatagatt
      901 ggatcgttac cactggtgct aatgtttacc atgatcttca ttttgcctat gatcttcccg
      961 ttagacaagg tcatttccaa gtagacgatg acgtattgta ttccaaacag atagtacgaa
     1021 tctacgatat ttacataaag gaagtaggaa cgcttcaagc gcaggatatt atagtgcaaa
     1081 gagaccttag aaatcaacag agggaattgc caatttctcc ttcaacatca gacatctctt
     1141 atgcacttgg gaaagctgca ttagaaaatt ctgctcatcc agaaaagtca ttcatggtag
     1201 ctgcttacaa gcataatgta cctatttaca tgccagcaat tggcgattct tccattgggc
     1261 taaacatgtt gccgttgctc ctagaacgca gtgaggatag actccccaat gtgatacttg
     1321 acgttgctga atcagcagcg atactctgga aaagtaacat atctggtgga attgaattag
     1381 gaggcggagt gccaaaaaat ttctttcaac agacgggtcc cgcactttat caaattctaa
     1441 aaatgaaaga aggtggacag gattacataa tacagattac tgatgcaaga tctgatacgg
     1501 ggggtttatc tggcgccacg ctacaagaag gtaaaagctg gggaaagatc agaacatctc
     1561 atgaaggaaa tgttattgtt tatggcgatt cttctgtatg ttttccgata ctgtgttctt
     1621 atgcattgtc agagtgcaaa aaacgcactc gcaaacaaat ttacaaatcc aagaatcgtt
     1681 ggcttgaaga aatgagaaat gtttatctta agaaaaggta atttcgaaaa attttcgatc
     1741 catctatcca ataaatcatc cgccaaacga atcgtcgcca tcaggtgaaa aggtgagttt
     1801 atcggacatc taattctgaa tagacttcgc cgctctaagt gcttcttttc cataatcatt
     1861 ggtaagcttt ctttcttcgt aactaccaca ttcgatacat ttaacggcgc tatttacccg
     1921 tacggtatct ccaccacaca ggttgcatag agtgtataac acgccatatt ctttatcttc
     1981 tatcgtaatg tgaatcgtcg aatttagcag acttataact ctgccacgga ttatgtctcc
     2041 tactcgaaaa gtaattttcc ctcttctttc tcccctgtct cgattccatc ctctaccatt
     2101 caacctagtt gatgcaattg cagaaaatcc ggcagagaac accttgccgt taaggtaaag
     2161 tagcttcaca gagatcattg gtccaaagag catttcaata tatccaacca ctacgtcccc
     2221 gattttgggc ataataagtg atttcttctg atctattctc acaattcggc gcttcaaatc
     2281 atattgctta ttccccatca cactagacct tatcgcgccg ccggagacga acgtgttctt
     2341 tccggcttca aattcttcaa tctcagccac ttgttctcct gggaatactg tggaagtctt
     2401 tgtttcttta ttcataatgg gtattgtcta gacataaagt tataattgtt acataatggg
     2461 tatagttgcc cttgtaattc caagttcaac tagatcctga acctttgata tgttgtcaga
     2521 gtaaaacctt aggatcgatt gcaggcatta acctcggcta aaaccgaacg caaaccctgc
     2581 tgccaacccc ccagtcaggg ggataccgga attggacata gctgtaagta tttgctcccc
     2641 caatgcagga gcaactgcgg gaaattgtga tgttgcattg aaacctgtca gtgtccccct
     2701 agcggcgcta tctaacttat cccaatttac cgcaacaatg ccttgaaatt gcaaatatga
     2761 caaagtcgca atagagagtc cggctaaaac aagaataatc ttgaaaattt tttttacagc
     2821 atatccgaca aggaaaccca atccacctcc aatcccgacc gatgttgcta ggttccctag
     2881 gtcaaaattc atgttatgaa gtttagttta acatactcgt ttatatggac tgcagatatt
     2941 tttcagaaca tctttaaact ggaaaacttt ccaataattc ttcttggaca ttctattagt
     3001 tatttgatcg ctcagtctgc tggaaaacat catcgcaaat aattttgtcc gccacttgag
     3061 atgcaactcg ggagaaaatc agtggataga tatatcctat ttcaagctta aaatgaagtg
     3121 attcatttta cagactatgt ttgtcaggac atcaacggtc acctacttac actaattttt
     3181 gacaatatct cttgaaaagc agaataattc ttttccatga gaggagtcaa gaaaaaagtg
     3241 gctccatact catctctatt atctgtaatc accagcccat tctttgaaag aatttcaaga
     3301 tgatggacca cagtcttgta gtctaacctt aactcagagg cgatttgatt tgtgtttgac
     3361 gggcgaaaat taagcatttc caaaatacga gctctagtga ctcctccttt ggtcgtcccg
     3421 atcaagtacc aaagaagtct cttaaaccgg ggatcaaagt acacttttcc ctccattccc
     3481 c
//
LOCUS       DASSIK010000356         2125 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_478027, whole genome shotgun sequence.
ACCESSION   DASSIK010000356 DASSIK010000000
VERSION     DASSIK010000356.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2125
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_478027"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            79..582
                     /locus_tag="VFI64_06595"
     CDS             79..582
                     /locus_tag="VFI64_06595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7242993.1"
                     /translation="MDTNSKRGSMTKAVAICLIAVGLVAGSSLMYSVIVGVYARQPFV
                     GGAVVIGTSENQKISCSNTSSKNTHGLQFSAHTRDGILQGYWDIASPFAGAENKGGYI
                     YDGSSTGKTYELKGKETHDGICQAKVPKDIIISGSCGKGVAINYKTINGLSHTFTGNV
                     KCLGHTT"
     gene            877..1791
                     /locus_tag="VFI64_06600"
     CDS             877..1791
                     /locus_tag="VFI64_06600"
                     /inference="COORDINATES: protein motif:HMM:NF024921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HET7242994.1"
                     /translation="MLVIQKSYAAEIKDVSVMYAGSLVKIMEKVVAPSFHNQTGYNFI
                     GEGKGSVQLSNLILDGFRRPDVFLSADTLPIEKIINHNPPLAQWLVKFASAELVIAYN
                     PNSPFATDLEKAAKGEIPWYKVLEEKGFKFRRTDPELDPKGYYTVIAAKLANIYYNDS
                     TLKNKILGADRNPEQVFPEEVLRSILDTGQIDAIAAYKHEAVSRGIPYITLAPQINLG
                     DSKYSNFYNQASYILHSNQTIIGNPIFFSYTIPVTVRNTDGAIALANYLISIQGKILL
                     SQVGLNPIKAIVQGDFNSLPPAIRVMIR"
BASE COUNT          701 a          400 c          402 g          622 t
ORIGIN      
        1 tctccagaat aatttattta agtatttcct atcccggtta caatctttat atatttccat
       61 ctaaaagaac aatttacaat ggatactaat tcaaaaaggg gatctatgac aaaggctgtt
      121 gcgatctgct taattgcagt agggttggtg gctggctcaa gcctcatgta tagtgtaatc
      181 gtgggggtat atgcgagaca gccattcgtt ggaggagctg tagttatagg tacaagtgag
      241 aaccaaaaaa tatcctgttc caatacgtca tccaaaaata cacatggtct tcaattctct
      301 gctcatacga gagacggaat tctacaaggc tattgggata ttgcatctcc attcgccggt
      361 gcagaaaata aaggcggata catatatgat ggaagcagta ccggaaagac ttatgaattg
      421 aagggaaagg aaacacatga cggcatatgt caagccaaag tacccaaaga tataatcata
      481 agcggaagct gcggtaaggg agttgcgata aattacaaga caataaatgg actgagccat
      541 acctttacag gtaacgtgaa gtgtttagga cacactactt aatattagca atacctgctc
      601 aactttccta ttttttattt ttcacattca tctaatcttg aaggtcttcc tatcgaacac
      661 ttcccagcaa caaccagact acttagtgcc ggcgcactaa ctactttaaa actatgatat
      721 gcatccgctt taccctgcaa tatattaacc aagtttattt atgattataa ttatgattat
      781 gattacctga cttacgaaat ggcatttcat aaacatcata ggaaactata tgtcacctta
      841 tttctctttg cactattctg ctccctattc atatttatgt tagtgattca gaaatcgtat
      901 gctgcggaaa tcaaagatgt ctctgtcatg tacgctggtt ctttagttaa aattatggaa
      961 aaggttgtag cgccgtcatt tcacaatcaa acaggctata atttcattgg agagggcaaa
     1021 ggttcagtcc aactttcaaa cttgatactt gatggattta gaaggccaga tgtcttttta
     1081 agcgccgata ctttaccaat agagaaaata atcaatcaca atccccctct agcacaatgg
     1141 cttgtcaagt ttgcatctgc ggaactggtt atcgcttaca acccaaatag tccttttgcg
     1201 actgatctag aaaaggctgc taaaggggaa ataccttggt acaaggtcct tgaagaaaaa
     1261 ggattcaaat tcagaaggac cgatccagaa ctggatccca aaggatacta tactgtcatt
     1321 gcggccaaac ttgcaaacat ttactacaat gattcgactt tgaaaaataa aatacttggt
     1381 gcagatagaa atccagaaca ggtattccct gaagaagttc ttagatctat attagatact
     1441 ggacagattg acgcaatagc tgcgtataaa catgaagccg tttctagagg gattccttac
     1501 attactctgg cacctcagat aaatttggga gattcaaaat attcaaattt ctataatcaa
     1561 gcttcttaca ttcttcattc aaatcaaact atcattggca atcccatctt cttttcttac
     1621 acgattcctg ttactgtcag gaatacggac ggtgcgatag cacttgcaaa ttatctaatt
     1681 tcaatacaag gtaaaatctt gctaagtcag gtgggattga atccaattaa ggcaatagtg
     1741 caaggagatt tcaactcctt gcctcctgca ataagagtta tgattcgata atgacgccga
     1801 gatgttcaag ttcaagtcca ccgacccata agaaaaacaa aattggatta tgaatatccc
     1861 caatagtcag gaattattcg agaccgggat gttggtatag cagatactga ttaagaagca
     1921 gatgtttctg tgttccactt atcaggagtt ggggattcga tcaaagttag gatcactatc
     1981 tatgactatt ggagaattaa gggctcaaat gaccaaaaga acaagtacca agagttgagg
     2041 aaaaaataat caaagttaga tgacatcaat agatgcttac tagtttcttg cgaaaagcct
     2101 aatgctttat gaataatttg atatt
//
LOCUS       DASSIK010000357         2576 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_668741, whole genome shotgun sequence.
ACCESSION   DASSIK010000357 DASSIK010000000
VERSION     DASSIK010000357.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2576)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2576)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2576
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_668741"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1162)
                     /locus_tag="VFI64_06605"
     CDS             complement(<1..1162)
                     /locus_tag="VFI64_06605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AIR synthase-related protein"
                     /protein_id="HET7242995.1"
                     /translation="MLSSTEDDYLTRQLGRTPNPLELDMTSTEWSEHCSYKSSKMLLK
                     LLPTKGTNVIIGPGYDAGVLDVGNGDVITVHIESHNHPSAVDPYGGAATGVGGVIRDI
                     ISMGTRPIGLLNALRFAPIENSNSSNSKWLFKNVVKGIADYGNCIGIPNVGGEVEFDK
                     SFREYCLVDVAAIGLGRKDEIIPNEAEHDDLIILAGNPTGRDGIHGASFASKLLVEDR
                     SAVQIPDPFLEKLLIEATREAVKKGCIKAIKDLGGGGLACCLSELSESVGMGFEVELS
                     SVHKKIPSLSPNEIMISESQERMIYIVSKKKQHEFTRILDRFGIAHSNIGTLKDHSDL
                     VILLNGRSIARLKSSLLANAPLVNRRSIRPSYLRKIKKYFVEPAEVKDYEKVI"
     gene            complement(1169..1879)
                     /gene="purQ"
                     /locus_tag="VFI64_06610"
     CDS             complement(1169..1879)
                     /gene="purQ"
                     /locus_tag="VFI64_06610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurQ"
                     /protein_id="HET7242996.1"
                     /translation="MVKIGLVVFPGSNCDRDVFNVLNNILKLKTEYLWHKTDSIHEFD
                     AVILPGGFSYGDRLRAGIIAARSPIMRQVKKLAERGLPVLGICNGFQILVESGMLPGA
                     LLMNKGLNFVCKWTRMEVLNTSTPFTGMLNNNQLINIPVAHGEGRYMIDQDTYESLKK
                     NKQIVFKYKDENPNGSIGSIAGICNDNGNVLGMMPHPERASDQILMPHGLTNNAILIF
                     QSLMLFLSRKKAVNKRRR"
     gene            2030..2419
                     /locus_tag="VFI64_06615"
     CDS             2030..2419
                     /locus_tag="VFI64_06615"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HET7242997.1"
                     /translation="MTKDVVAVDENMTALDAARLMTEKGISSLIIEKDHAPVGIISER
                     DFVKKICLKDMQPSTINVGSIMSKIQTYASPDTPVDVAVQRMVNHKIRRLPVISDGKV
                     IGIITVTDLAKHLRTILLIEGILSDEN"
BASE COUNT          773 a          538 c          458 g          807 t
ORIGIN      
        1 agatgacctt ctcatagtct ttgacttcgg cgggttcaac aaaatatttt ttgatctttc
       61 tcaaatatga tggcctaatt gatctacgat tcactaacgg tgcattcgca agcaaacttg
      121 atttcagtct agcaatggat cttccattta agagaataac aagatctgag tgatccttca
      181 atgtccctat gttcgaatgt gcaattccaa atcgatcaag tattcgtgtg aattcatgct
      241 gtttcttttt gcttactatg taaatcattc gctcttgtga ctcagagatc atgatctcat
      301 ttggtgatag agacggaatt tttttgtgaa ccgacgacaa ttcaacctca aaacccattc
      361 ccacactctc agacaattct gagagacagc atgccaatcc tccacctccc agatctttta
      421 tagctttaat gcatcctttt tttaccgcct ctcttgttgc ttcgatcaac aatttctcta
      481 aaaaaggatc agggatttga acagcagatc ggtcttctac taacaatttg gatgcaaacg
      541 aagcaccgtg aataccgtct cgccccgtag gatttcctgc aagtattatt agatcatcat
      601 gctctgcttc attgggaata atttcatctt ttctaccaag gcctattgca gcgacatcaa
      661 caaggcagta ctcgcgaaag gatttgtcaa attcgacttc gccacctacg ttaggaatcc
      721 caatacaatt gccataatct gcaattccct taaccacgtt cttaaagagc cattttgagt
      781 tagacgagtt actgttttca atgggtgcaa atcgaagcgc attaagaaga cctataggcc
      841 tcgtccccat ggaaatgata tcacgtataa cgcctccaac tccagttgcg gcgccgccgt
      901 acggatcaac tgctgaggga tgattgtgac tttcaatatg gacagtaata acatctccat
      961 tgcctacgtc caagacgcct gcatcgtatc caggtcctat tataacgtta gttcctttgg
     1021 ttggtaataa tttaagtaac atcttggaag acttataaga acaatgttcg gaccattcgg
     1081 tagaagtcat atcaagttca agtgggttgg gtgtcctacc cagttgccta gtcaaataat
     1141 catcttcggt agaagataac acgtcgtttt agcgcctccg cttgtttaca gcttttttcc
     1201 tagacaaaaa aagcattaac gattggaaaa ttaagattgc attatttgtt aatccatgag
     1261 gcataagtat ctgatctgaa gccctttctg gatgaggcat catacccaaa acgtttccgt
     1321 tatcattaca tattccagca atagatccaa tagaaccgtt gggattttca tctttatact
     1381 tgaacactat ttgtttattt ttcttcaaac tctcatatgt gtcttgatca atcatataac
     1441 gcccctcacc atgtgcaacg ggtatgttaa tcaattgatt attatttagc atgcccgtaa
     1501 aaggtgttga cgtatttaat acctccattc tagtccactt acatacaaag tttagccctt
     1561 tattcatcaa caaagctcca ggcaacattc cagattcgac aagtatttga aaaccattac
     1621 aaattcccag tactggcaaa cctctttcag ccaatttttt aacctgtctc ataatcgggc
     1681 tacgtgccgc aatgattcct gcccgtagtc tatcaccata tgaaaaccca cccggaagaa
     1741 taacggcatc aaattcatgt atggaatcag tcttgtgcca caaatattct gttttgagtt
     1801 ttaggatgtt gtttaataca ttaaatacat cacgatcgca attacttccg ggaaaaacta
     1861 ctaagccaat cttaaccatt tagaggatgg tttgatcctc catctttctt ttattaatag
     1921 attgggccag atgacaagca ttgatttggt ttttggagtt tatttcaaaa tatttatttt
     1981 gactgtcatt tattaaatac actcattgaa tgatctagta caagacatta tgacaaagga
     2041 cgttgtagcc gttgatgaaa acatgacggc tttggatgca gccaggctaa tgactgaaaa
     2101 ggggataagc tctttaataa tcgagaaaga tcatgctcct gtgggaataa tatctgaaag
     2161 ggattttgtc aagaaaatat gcttaaagga catgcagcct tccaccataa atgttggaag
     2221 cataatgtct aaaattcaaa cttatgctag ccctgatacc cctgtagatg ttgccgtaca
     2281 aaggatggtc aatcacaaga tcagaagact tcctgtaatt tctgatggca aggttatcgg
     2341 aataatcact gtgactgatt tggcaaaaca cctcagaaca atcctgttga tcgaaggaat
     2401 actttccgat gaaaattaaa atcatcttgt ttcttattag gagaatcatt tgataatcta
     2461 ctagtgggat ctattcttta aattcggaga taatagaatt gtttaaccac gttaagatcc
     2521 aaaagtataa aagcattcca tgcccgttgt agctgatagg atggagttta aaaatc
//
LOCUS       DASSIK010000358         6430 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_784720, whole genome shotgun sequence.
ACCESSION   DASSIK010000358 DASSIK010000000
VERSION     DASSIK010000358.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6430)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6430)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6430
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_784720"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..696
                     /locus_tag="VFI64_06620"
     CDS             <1..696
                     /locus_tag="VFI64_06620"
                     /inference="COORDINATES: protein motif:HMM:NF013227.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HET7242998.1"
                     /translation="MNQILEIREKHSLLVIEDACQSLGSSYFGRQTGSIGNMGCFSLY
                     ASKVLTAGEGGAISTDDDDLANNLRMIRNHGMVKGYDTRVLGLNMRLPEISAAIAKVQ
                     MQKLPRILELRRKNAKLLHQLLGAVNQRLSLKLPIEPNGLSYNWYLYTVTINNKRDEI
                     KKQLNNAGIGATIYYDPPVHMTPYYSTMSDGIKLENTEMASKDVLSLPVHQSLTEVEI
                     RFIANKVVEAMDN"
     gene            837..1979
                     /locus_tag="VFI64_06625"
     CDS             837..1979
                     /locus_tag="VFI64_06625"
                     /inference="COORDINATES: protein motif:HMM:NF014433.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015446 - ATPase-coupled arsenite
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0071722 - detoxification of
                     arsenic-containing substance [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TRC40/GET3/ArsA family transport-energizing
                     ATPase"
                     /protein_id="HET7242999.1"
                     /translation="MRLVIYTGKGGTGKTVSSCATAINLADKNYKTILISSDPAHTLS
                     DALSINIGNELSDVLSNLMAIEIDPIFEMQKNYDSFLSYIASTFYSKGVSRTMAYEMG
                     MLPGMTQLLSLLRIEHVLTRSDCDVAVVDMPASGEALRFLHFPKLAGSMGRKLVGIGG
                     LLGGLARFFQPLSGYSGQLGSFLNQEADIMKRLENLGSIMSNQSITSLRLVTNTDVFS
                     LKNAKRALMSASLFGINVDLVLINKVDKTRYETKKISENIPLEFYPVPCRIAELRKTE
                     LQGIQMLRDHALEIFNDSDPSNVFFQGKVYSLTETNDSVTVTVRLPFVKESDVNVIKD
                     GDELIITARHEAGHVANTVMLPLGAIGMKLLSSNLNGNELSIVLVR"
     gene            2059..2595
                     /locus_tag="VFI64_06630"
     CDS             2059..2595
                     /locus_tag="VFI64_06630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HET7243000.1"
                     /translation="MPIDPDFPKNYQVIGKIQHADGEHFHFMWGPGKLKEAAENEEVK
                     AAYTARGEEIVPLGVSGTMVAIDWDSCVADGACIEACPVQVFQWYRTEHDVPAIEVTK
                     QTWAGTGKDVKDERKDFTDKADPIREHDCIWCMACVSVCPPQAVKVDQAALEFHEKAD
                     GTFNESLSKGSAPPPHAH"
     gene            2729..3319
                     /locus_tag="VFI64_06635"
     CDS             2729..3319
                     /locus_tag="VFI64_06635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243001.1"
                     /translation="MIISDSYMGVFLPSDLPGRILEFMNSKVDLPIVIRTELMACFYL
                     FGKNHGVHGEIEILNVKNLARKTVTQISSEVKRFANLNSTMNQELVRQNFLKRAMQIA
                     VDVKEKLSTGDIDLNRRISRDPTILTDIFTFHIAFYKEDYFFHLFDPLPGNQLPADVR
                     DVLDGRMLMLGFNTKDSSLLPFPSLLTPFIEWIRSN"
     gene            3459..4580
                     /locus_tag="VFI64_06640"
     CDS             3459..4580
                     /locus_tag="VFI64_06640"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HET7243002.1"
                     /translation="MRQFRNTPIRQSWKKREFDLEPLVVSRTQTKVHDENLLILADNL
                     KAMKYLLLNGFKEKIDLVYIDPPFYSGASYYHRASKRTDLAFKDTWSNQVNLYMNMIY
                     PRLSLIRSLLSREGSIFVHLDWHASHYVKIAMDEIFGIENFRNEIIVKRGRKKNLLYQ
                     FEKVDRMHTANDIILWYSKYPSTKFCKPLVPADLKSKWMSFWSNTNRPTMRYSIFGSA
                     PQRGQWKWSKERANKAIQNYELYAKKYEMNYPLEEYWEKQGRILEFIRKRSTVKYPEY
                     WIPPKTRKIIDNLWLDIESYNYSTGFSTEKHNALLERIIGLFSKPNSIISDLFCGSGT
                     ALVAAEKMGRRWIGCDSSEVALSVVKERLGKTRYDFVTL"
     gene            4774..5208
                     /locus_tag="VFI64_06645"
     CDS             4774..5208
                     /locus_tag="VFI64_06645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2 subunit beta"
                     /protein_id="HET7243003.1"
                     /translation="MNKDNNDKAYEVLLKRIQTNLGDTAKKSTARLEVPVPQVMWVGQ
                     RTIFRNFMEFPKALRREPEKILLYLNKELASAGYIAGERVIFLGRKEPSSFSALIDRY
                     IKDYVICPVCQSPDTRTEKTKKLGFLHCEACGARSSIKATYA"
     gene            5924..6241
                     /locus_tag="VFI64_06650"
     CDS             5924..6241
                     /locus_tag="VFI64_06650"
                     /inference="COORDINATES: protein motif:HMM:NF012314.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HET7243004.1"
                     /translation="MSELGPADFDDLFSRNEKALVLFYAVWCPFCQRFKPIFDSIETN
                     FFLFSSKLNDDDSPLWDRFSVETVPTIIAFDGGKIIGRRDARKGVGLTKDDVDTLLKE
                     LKS"
BASE COUNT         2119 a         1129 c         1340 g         1842 t
ORIGIN      
        1 atgaaccaaa ttctagaaat tagagaaaaa cactctttgc tggtgattga agatgcatgc
       61 caatcattag gatcatctta tttcggaaga cagactggtt ctattgggaa tatgggttgt
      121 tttagcctgt atgcaagtaa agtgcttact gctggggaag gtggagctat ctcaaccgat
      181 gatgatgatc tggccaacaa ccttaggatg attaggaatc atggaatggt gaaagggtat
      241 gatacacgtg tcttagggct aaatatgcga ttgcccgaaa ttagcgccgc aatagcaaaa
      301 gtacaaatgc aaaaattgcc acgaattttg gaattaagaa ggaaaaacgc taagctattg
      361 caccagctac ttggtgcagt taatcaacgg ctaagtctaa aattacctat cgaacctaac
      421 ggattaagtt ataattggta tctttataca gtaactataa ataataaaag ggatgaaatt
      481 aagaaacaat tgaataatgc aggaataggc gcaaccattt attacgaccc cccagtacat
      541 atgacaccat attattctac tatgagtgat gggattaaat tggaaaatac tgaaatggca
      601 tctaaagatg ttctttcttt acctgtccat caatcactaa cagaagtgga aataaggttt
      661 attgccaata aggttgtgga ggctatggac aactgaacat ggatagaaca tggatcctgt
      721 acaacatact ctcgtgatat tggtgatact aaatagtaga aatgttattg atgtattcga
      781 ttttatctgt tcactctgaa ggatttaatt gataccatta agaataatac actgacttga
      841 gactcgttat ttacacagga aaaggaggca cagggaaaac agtttcgtca tgtgcaactg
      901 ccatcaatct agcagacaaa aattacaaaa caatattgat atcttcagat cctgctcaca
      961 cactaagtga tgccctatca attaacatag gaaatgaatt gtcagacgta ctgtctaatc
     1021 ttatggccat agagatagac cctatatttg agatgcaaaa gaattacgat agctttcttt
     1081 cctacattgc ttcaactttc tacagtaagg gtgttagtcg aactatggct tacgaaatgg
     1141 gtatgttgcc tggaatgacc caactcttgt cgcttttaag aattgaacat gtcttaacac
     1201 gaagcgattg tgatgtggca gtggtggata tgcctgcttc gggtgaagct cttcggtttc
     1261 tacattttcc aaagttggct ggttctatgg ggcgaaagct tgtaggcatc ggtgggctgt
     1321 tagggggtct tgctagattt tttcagccat tgtccggata ttctggtcag ctgggctcat
     1381 tcttgaatca agaagcagac atcatgaaac gtctagaaaa tcttggtagc ataatgtcaa
     1441 accagtcaat tactagctta cgtcttgtaa caaatacaga tgtgtttagc ctcaaaaatg
     1501 ctaaaagggc tttaatgtct gcatcattat ttggtataaa cgtcgatctt gtccttataa
     1561 acaaggtcga taagacgcgt tatgaaacga aaaagatttc agaaaatata ccgttggaat
     1621 tctatccagt gccgtgcaga atagctgaat taaggaaaac agaactgcag ggaattcaaa
     1681 tgttaagaga tcatgccctt gaaattttta atgattctga cccttctaac gttttttttc
     1741 agggaaaggt atactcttta actgagacca atgattcagt taccgtcacg gtgagactgc
     1801 catttgttaa agaatctgat gtaaatgtga tcaaagacgg tgatgaacta ataattactg
     1861 caaggcatga ggcagggcat gtggcaaata cagtcatgtt accacttgga gctattggaa
     1921 tgaaattgct ttcaagcaat ttaaatggaa atgaattatc aatcgtcctc gtaagatgaa
     1981 agtgcgccaa agaggataaa tcaggctctc tacacatatg gtttatataa tatttcgctg
     2041 gagaatagat cgaatagaat gcctatagat ccagactttc caaaaaacta ccaagttatc
     2101 ggtaagatac agcacgctga cggggaacat tttcatttca tgtggggccc cggcaaatta
     2161 aaagaggctg cagaaaacga agaggttaaa gctgcatata ctgctagagg agaagaaatt
     2221 gtcccactcg gtgttagcgg gactatggtt gcaatcgact gggattcctg tgttgcagat
     2281 ggagcgtgca ttgaagcgtg cccagtacaa gtctttcaat ggtataggac ggaacacgat
     2341 gtacctgcaa tagaagtaac aaaacaaacg tgggcaggga caggcaaaga tgtaaaagat
     2401 gagagaaaag atttcaccga taaggcagat ccaattcgag aacatgattg catttggtgc
     2461 atggcttgtg tgtcggtatg tccgccccag gcagtaaaag tagatcaggc agcattagaa
     2521 ttccatgaga aggcagacgg tacgtttaat gaatctttat caaaaggtag cgcaccacca
     2581 cctcatgctc actaagcctc cttacctttt ttatcactga tctctcagca ctttatctaa
     2641 cttcttgata tagaattaat tcattgtcca agaagtacta cttcatacat tgtgtcaatg
     2701 cccgattgta taattgtaat atctaagtat gataatatca gattcttaca tgggagtgtt
     2761 tctgcccagc gaccttcctg gtagaattct ggagtttatg aatagtaagg tcgatttgcc
     2821 aattgtgatc cgaactgaat taatggcctg cttctacctt tttggcaaga accacggtgt
     2881 ccatggtgaa attgagatct tgaatgtgaa aaatctcgct aggaagacag tcactcagat
     2941 ttctagcgag gtcaagcggt ttgcaaacct aaattcaaca atgaaccaag agctagtgcg
     3001 ccaaaatttt ctcaaacgag ccatgcaaat agcagtagat gtaaaagaga agctttccac
     3061 aggtgatatt gatttgaaca ggagaatttc gcgagatcct accattttaa ctgatatctt
     3121 tacatttcac attgcatttt acaaggaaga ttactttttt cacttatttg atccgctgcc
     3181 tggaaatcaa ttacctgcag atgttagaga tgtacttgac ggaaggatgt tgatgcttgg
     3241 tttcaacacc aaggattcat ccctacttcc gtttccctcc ctgttgacac ctttcataga
     3301 atggatccgt agtaactgag aatgacacta ttcttctacg aaattcatca tattatttag
     3361 tcgctggctt aattgcgcga tgttggaagg caaagagtta aagtattacg agaacatttg
     3421 atcgtttgaa ttattattat ctatggtgaa ttggaaaatt gcggcagttt agaaataccc
     3481 caattcgcca atcttggaag aaacgcgaat ttgatttaga accacttgtg gtctcaagga
     3541 cacaaacgaa ggttcacgat gaaaatctac tgatacttgc agataactta aaggcaatga
     3601 aatatttgtt gttaaatggg tttaaagaaa aaatagacct tgtatatatt gatcctccat
     3661 tttattcagg agctagttac taccataggg caagtaagag gacagatctc gcctttaaag
     3721 atacatggag taaccaagtt aatttgtaca tgaatatgat atatcccagg ttgtctttaa
     3781 tcaggagcct tctatctcgg gagggttcca tttttgtaca tctcgattgg catgcatccc
     3841 attatgtaaa aattgccatg gatgaaatct tcggaatcga aaattttcga aacgagatta
     3901 ttgttaagag aggtagaaaa aagaatctgc tctaccaatt tgaaaaagtt gatcgcatgc
     3961 acacagctaa cgacattata ttatggtatt cgaagtatcc atctacaaag ttctgtaaac
     4021 cgttggttcc ggcagatttg aaatcaaaat ggatgagctt ttggagtaat accaacagac
     4081 caacaatgag atacagtata tttgggtctg ctcctcaacg aggtcagtgg aaatggtcaa
     4141 aagaaagggc aaacaaggct attcaaaact acgaacttta tgcaaaaaaa tatgaaatga
     4201 actatccatt ggaggagtac tgggaaaaac aaggtaggat tctagaattt atcagaaagc
     4261 gaagtacagt aaaatacccc gagtactgga tacctccaaa gacaaggaag atcattgata
     4321 acttatggct agatattgag tcgtacaact attccacagg gtttagcacg gaaaaacata
     4381 acgctctact ggaaaggatt atcggtctat tttccaaacc aaattcaatt atttctgatc
     4441 tcttttgtgg gtcaggaaca gctctcgtgg ctgcagaaaa aatggggagg cgctggattg
     4501 gttgtgactc atctgaagtt gcactcagtg tagtcaaaga aagacttggg aagaccaggt
     4561 atgactttgt aaccctataa cctagtaaat gggcctagag gttcattgct ttatatgtat
     4621 gcaagattta atcaaaatca ggatcacaat ttctggctaa tttccacata agtaaaactg
     4681 ctgctaaatc attggacaat gtagaaatta tcgtaatcag tagccagacg ttagcacaaa
     4741 gaacattaaa gccttcttca tttcaagtag cagatgaata aggacaataa tgacaaggca
     4801 tatgaggtct tattaaagag gatacaaact aatttaggtg acacggccaa aaagtctaca
     4861 gctagacttg aagttccagt acctcaagtt atgtgggtag ggcagcgcac aatattcagg
     4921 aatttcatgg aatttcccaa agcattacgg agagaacccg aaaagatctt actctacctc
     4981 aataaagaac ttgcctccgc gggatacatc gctggagaac gcgtcatatt tcttggtaga
     5041 aaagaaccat catcttttag cgctctaata gatcggtata taaaggatta tgtgatatgt
     5101 cctgtttgcc aaagcccaga tactagaaca gaaaaaacca agaaactagg tttccttcac
     5161 tgcgaagcat gtggtgcacg ctcttcgatc aaagcaacct atgcctaggg ttaccaaaat
     5221 aagaaagcgt tgctttactc ttcctcacat gacattctag gaacgatcaa ttaatgattt
     5281 gcacagatat gactcggcgt catcgagtat gtataatatc gtaaatgagg tatcggaaga
     5341 ggaaattcta gttttgcaat agttttgaga actttattct gtgttttgac tagtagactt
     5401 agtatattta acttcatgct ttttcaacat tcccaaaaaa attattttga tataacacga
     5461 agagtaaaag aaataaaaat atgaatatgt caaaggttcg ccaaaattct aaaataaagg
     5521 cacagaatct gaaaattgag catgagatag aatgcccgag atgtaacgac atgatgacat
     5581 tgtcttcgga tttcgatcag ttgtattatt catgtgaggc ttgtaatttc tgtctctata
     5641 cattcaaaag gaatttctaa ttaccgcaaa tcaatcttaa cgtttgaatc aacgcttaga
     5701 actaagcctg atctttcacc atgccaaaag aaatttgaga ccaaagtaca gagattgtca
     5761 actaacgaga tatctaatgg gttgaaggaa gtaataaaca gcagagcact ggagaagcaa
     5821 ctaaaatccc ctgtctggta cgcatgtgcc tagttgatga aaggtaactc atgagattcg
     5881 caaatgaaaa tcaatattag tgaaaaggat ctcttactta aaaatgagcg aattaggtcc
     5941 tgccgacttt gatgatcttt tttctagaaa tgaaaaggct ttggtcctat tttatgctgt
     6001 atggtgccca ttttgtcaga ggttcaagcc aatttttgac tccatcgaaa caaacttttt
     6061 cctgtttagt tcaaaattaa atgatgatga tagcccattg tgggatcgct tttcggtaga
     6121 gactgtccct actatcatag cttttgatgg tggaaaaatt ataggtagaa gagatgcacg
     6181 gaaaggagta ggattaacca aggatgatgt tgataccctc ttaaaggaac taaaatcatg
     6241 agattacttg ctatcctgga gatgcatcac ctaattctaa tgaatcaaag gaattaagat
     6301 gtcggtcagc ctatctgagg aatgatctca catttgatgg agatgaaatt ttaaagttgc
     6361 tgaatagact gagagaaaag ataaatcctc taactgcacg actaggtaca aagttaggta
     6421 cactagggct
//
LOCUS       DASSIK010000359         2073 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_576815, whole genome shotgun sequence.
ACCESSION   DASSIK010000359 DASSIK010000000
VERSION     DASSIK010000359.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2073)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2073)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2073
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_576815"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(227..604)
                     /locus_tag="VFI64_06655"
     CDS             complement(227..604)
                     /locus_tag="VFI64_06655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243005.1"
                     /translation="MSQSLCKSILALDDSIRFVAVANKLGTVDAAEYRTGLNPLLTKE
                     ETKQYAMQAVTRASLREDFTPKLGRFEYSVGKYSNLVRAIIPFEEGEEQTYLLLSFDV
                     GSDAVKIIETKIAHFLADAARKN"
     gene            751..951
                     /locus_tag="VFI64_06660"
     CDS             751..951
                     /locus_tag="VFI64_06660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243006.1"
                     /translation="MDMENKDEKNSFVWVTLKMPDGTKYEIPLPPKTFSSGREGFYAQ
                     IPSFVYNNGIYGGQIQVWKKTK"
     gene            complement(1146..1373)
                     /locus_tag="VFI64_06665"
     CDS             complement(1146..1373)
                     /locus_tag="VFI64_06665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243007.1"
                     /translation="MIKVRKVLCYFSGLVLTLAGIPFITEFIFESQGGQQVQYISIYP
                     VIGGILMGFGILVCYLAYRSGNKAEIIPPSK"
     gene            complement(1439..1843)
                     /locus_tag="VFI64_06670"
     CDS             complement(1439..1843)
                     /locus_tag="VFI64_06670"
                     /inference="COORDINATES: protein motif:HMM:NF025178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HET7243008.1"
                     /translation="MGQNQDFVEAGRVSEIKKGQMKHTEINGKEIVLANLDGTFYAFS
                     DRCGHMSARLSRGNLNQTIVTCPFHAAKFDITTGKKVGEPVLEIPPDMEPLPPKWQKY
                     MEIVGQEMSYIKTYDQESYEVKIEGDSIKIKV"
BASE COUNT          606 a          422 c          335 g          710 t
ORIGIN      
        1 ttgagtcagt gtcgacagtc tggaccaaca tccaactatt ttttatattc atcaggcgta
       61 ttgtatattt tgcaccagcc tgaaaatcta ctaccaggct tgctcaccga atcccctaat
      121 tatttatcct accgcaacaa aaatcgtaat aaatagtcaa gagagctaga ccgaatttta
      181 cattgtgttt gagattttga aaaaggatga tacatttttt ccttgattag ttcttccgag
      241 cagcatctgc taaaaaatgc gcaatcttgg tttcaataat ttttactgca tcagatccaa
      301 catcaaatga caatagtaaa taagtttgct cttcaccttc ttcaaacggg attattgctc
      361 gaactaaatt agaatatttt cctactgaat actcaaatcg acctaatttg ggagtgaaat
      421 cttccctcag ggaggctcta gtaacagctt gcattgcata ttgctttgtc tcttctttag
      481 tcaatagagg atttaaacct gtacgatatt cagcagcatc aactgtgcca agtttgtttg
      541 caacagccac aaatcttatg gagtcatcaa gtgcgaggat acttttgcat agagattgac
      601 tcattgtcat aattaacaac cgctattatt tttcttttct atgaatctct tctgtgaacc
      661 aatataacgg tccattattt cttgaccgtg tacaaccatt tgtattaaga ttaaaataat
      721 tcttgttatg ttatgttgtg agtagccacg ttggatatgg aaaacaaaga tgaaaaaaac
      781 tcgtttgtgt gggtgactct gaaaatgcct gatggaacta aatatgaaat tcctctgccc
      841 ccaaaaacat ttagttctgg tagagaggga ttttatgcgc aaatcccttc tttcgtctat
      901 aataatggta tatacggtgg acaaattcag gtttggaaaa aaacaaagta agagattgag
      961 ctgttgcgaa tagaattcaa tttaattcaa taatcataat cttgacggtt agtaaaatcc
     1021 cgccatttat ttagacattt ttctccgaat tacttcttgt cccacctcac ttgagtatcg
     1081 caacctctgg ctgtaatact ctgtttttag cacgtatccg aagggtttgc ataccatttc
     1141 ctacttcatt tggaaggtgg tataatctca gccttattcc ctgacctgta tgccaaataa
     1201 cacaccaata ttccaaagcc catcaaaata ccacctataa cagggtatat tgatatgtat
     1261 tgtacttgtt gccctccttg ggattcaaag atgaattccg ttataaatgg aattccagct
     1321 aacgttaata ctaatccaga gaaatagcac aatacctttc ttactttaat catgcacata
     1381 ttatatactg tgtatggctt atacctatct attggtaacg taggcctcgg taagctatct
     1441 atacttttat cttgatagaa tccccttcta ttttaacttc atagctctct tggtcatatg
     1501 ttttaatata cgacatttct tgacctacaa tttccatata tttctgccac tttggaggta
     1561 agggttccat atctggaggg atttctagca caggttctcc taccttcttt ccagttgtga
     1621 tatcaaactt tgctgcatgg aatggacagg ttacaatagt ttgattaaga ttcccacgtg
     1681 aaagccttgc actcatatga ccacacctat cggagaaagc atagaacgta ccatcaagat
     1741 tggctagtac gatttctttt ccatttatct ctgtgtgttt catttgtccc ttcttaattt
     1801 cactcactct gcctgcttca acaaaatctt gattttggcc cattgttcaa gtttacgtaa
     1861 gcgtaatatt tattcgttga actcagaaga taatacattc tagcatatag tccagccagc
     1921 atacctagcc ctcctttcga aatttcgaat ttatttcaga ttagaataag ctcgattcac
     1981 agtccaagtt tgtcttgact cccgctttct aactaattat tagattcagg taatttcatg
     2041 tcttcatgaa attgtatgga acatcgctct cta
//
LOCUS       DASSIK010000360         2625 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_576840, whole genome shotgun sequence.
ACCESSION   DASSIK010000360 DASSIK010000000
VERSION     DASSIK010000360.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2625)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2625)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2625
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_576840"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..523)
                     /locus_tag="VFI64_06675"
     CDS             complement(<1..523)
                     /locus_tag="VFI64_06675"
                     /inference="COORDINATES: protein motif:HMM:NF012343.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase subunit I"
                     /protein_id="HET7243009.1"
                     /translation="MNKDNPLLDEYNLENGPAPLYRISKDLSDLTLMFIISSVVFFLA
                     AGTLAIIMRTVQSKLILLGNQQQTIGMFYAALTAHGQLMFFGFASMLTVGLSYYLLSK
                     FAKKPLYSMKMSIISYSLMNAASVLLIVSAIMFFGGGWYNLMPLAFHPQNGGWNIFST
                     VLFLMADTSIGIGL"
     gene            complement(537..1124)
                     /locus_tag="VFI64_06680"
     CDS             complement(537..1124)
                     /locus_tag="VFI64_06680"
                     /inference="COORDINATES: protein motif:HMM:NF012344.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243010.1"
                     /translation="MTSALVIATAFFIYVVLSTKSNHVSLKGFDKVKYELNKYHVERY
                     WGIFVAALLIWFWILGYPWMPPVAFDSALLQSQNIHTVGVTAGQWYWMLDDRGSYQNA
                     NDTNVNTNNNQLYVKAGETVKFVARSIDVNHGFGVLSSSNQMDVPLFQMQVVPGFDNI
                     FYYTFKKPGIYTIRCLEYCGWNHPYMVSSITIHAA"
     gene            complement(1513..1926)
                     /locus_tag="VFI64_06685"
     CDS             complement(1513..1926)
                     /locus_tag="VFI64_06685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243011.1"
                     /translation="MYENSVVALHMILESPTTAGDRSIHSSDVSCKISTIPRQITYLE
                     NGIQYYCIEVTCDDGSEFAIQEYGDEAETLCREAHKCILGPLTSYIPELESLGLKPNH
                     INELNDNYEMENLVSNIKQSFFQDYKSSDVHSISL"
BASE COUNT          831 a          499 c          465 g          830 t
ORIGIN      
        1 ctaatcctat tcctatactg gtatctgcca tcaagaaaag caccgttgaa aaaatattcc
       61 atcctccgtt ctggggatga aaagccaacg gcataaggtt gtaccatcca ccaccaaaga
      121 acatgatggc ggatactatt aacagcacac tagcggcatt catcagagaa tatgaaatga
      181 tagacatttt catgctgtaa agtggttttt ttgcaaactt actaagcaag taataactta
      241 gtcccacagt taacattgat gcaaacccga agaacattaa ttggccatgt gctgtgagag
      301 cagcgtaaaa catccctatg gtttgttgct ggtttcctaa cagaattagt ttagattgaa
      361 ccgttctcat tataatcgcc agagtgccag ctgctaaaaa gaacacgaca gaggaaataa
      421 tgaacatcaa cgttaggtct gatagatcct tggaaattct ataaaggggt gctggaccgt
      481 tttctagatt atattcgtct aaaaggggat tgtctttgtt catatggccc tcagactcac
      541 gctgcgtgta ttgtaatgct agaaaccatg tagggatgat tccaaccaca atattctaga
      601 catcttattg tgtaaattcc aggtttttta aatgtgtaat aaaatatgtt atcaaatcct
      661 ggaaccacct gcatctggaa caggggaaca tccatttggt ttgagctgga aagaacgcca
      721 aaaccatgat tcacatctat cgatcgagca acaaatttga ccgtttcacc agccttaaca
      781 tagagctgat tgttattggt gttaacgtta gtatcattag cattttgata actgccacga
      841 tcgtctagca tccaatacca ttgtccggca gtaactccca ctgtgtggat gttttgggac
      901 tgtagtaaag cagagtcgaa tgcgacaggc ggcatccaag gatagcccaa aatccagaac
      961 caaattagca atgctgctac gaagattccc cagtatcttt ctacatggta tttattaagt
     1021 tcatatttta ccttgtcaaa tccttttaag gatacatgat tggattttgt ggacagaacc
     1081 acgtagataa agaaagcagt agcaataact aaagctgaag tcaaaaatag ggtcagccag
     1141 ggaaccccgt atccaagatc tgctgcaagt tctacaccgg ctatacctca tactcccccg
     1201 ttaacattat caactttcaa accaaaatca attctggttt gaagttttag tataaaagat
     1261 ttttctaatt ttatttgatc cttgatattt caatatccca attcgaacac gtatttctgt
     1321 attctgtttg attactagtt taaagtactg gaactgaatc tctcttctgt ttgtaccttc
     1381 cttcattcag tgcatcgaca acggatggat ctagtattca ttaagattag gatactcact
     1441 aatctaacct gttttcaaga aaaattcaaa aatatatttc cctaagggaa ataacgaaaa
     1501 atactaaagt acttaaagtg atatgctatg cacgtctgat gatttgtagt cctggaaaaa
     1561 tgactgttta atattactga ccaaattttc catttcataa ttatcgttta attcgtttat
     1621 gtggtttggc ttgagtccta atgattctaa ctccggtata tatgaagtaa ggggaccgag
     1681 aatacactta tgtgcttccc tgcacaatgt ctcagcttca tctccgtact cttgtatagc
     1741 gaattcactt ccatcgtcac acgtgacttc aatacagtag tactgtattc cattttccaa
     1801 gtaggtaatt tgtcgcggta ttgtactgat cttgcaagaa acgtcagatg aatggatgga
     1861 tcgatctcca gcggttgtag gagattccag gatcatatgg agtgcaacta cactattttc
     1921 atacatttac tggcccccaa cgactactac agctcagttc ttcaaatgca tggataaaca
     1981 actcatcata ttaattgcat aacttacaga taaatcttat tatagaaatt tcgtattatt
     2041 atcatatata atatatatat aataaaaact atcacgaatt atatgctttt tgtgttaaat
     2101 tatgggattt tattaaagaa gtatattatc aatataatgg cctggccatg cacgatggaa
     2161 tagtcggcaa ccaggaacaa tcaggcatgc atagtgacag gaccaatatc aaaatggtta
     2221 ccaagttaat aaggcatttg aagaatattt ttgaaaaaaa attaggggtg cgtctttcag
     2281 gataaagaaa ctgtactgaa actatatggc taaaccatag aagcctatcg gagtaatcat
     2341 attgattcta tccctcatct aggtaatccg ctgtatctca cgacgataga gacatgatta
     2401 gaatggccgg ctgaatatac ggtaatccta tttttattgt cttttttaac tacagatttg
     2461 ttctcataat tagtttattt ttatcgttct gacactgctt cagtttattt tgttattatc
     2521 actattgatc ttggacacgt aacattaata gcatatttcc tatccataga tagtaatatg
     2581 ttaaaaattc gtacagtgcc atcactagat ggcatacttt atgcc
//
LOCUS       DASSIK010000361         6168 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_970615, whole genome shotgun sequence.
ACCESSION   DASSIK010000361 DASSIK010000000
VERSION     DASSIK010000361.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6168)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6168)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6168
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_970615"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            323..832
                     /locus_tag="VFI64_06690"
     CDS             323..832
                     /locus_tag="VFI64_06690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243012.1"
                     /translation="MAHKITALFSFSLMIFSLSILLATTTKISSAEVAHVREITASNS
                     TVWYGGEKIGNLAVGFTSQGYEPTSGGLVNLTAHVARFPASGSVLEGWLIDPDIPSYF
                     NLTLGQFVNGTLKFDQYMVNPAVYKFFVISQEPVGDTDPRMSNIILGGSEFALEPEDI
                     VAGSKLNLP"
     gene            1060..1602
                     /locus_tag="VFI64_06695"
     CDS             1060..1602
                     /locus_tag="VFI64_06695"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HET7243013.1"
                     /translation="MSIQLILLMAVLVTAVFSVGITTILMNPSYAQEQRFITSLTGDQ
                     EVPPSGSAAKGSAWFKPNNDSMWYKIDVTGMDTIMEAHMHIGKSGQNGDPVVMLFHSG
                     PTSPLNGTLIQGSFSAAELYGPMSGRTISHLLDKMNKGEAYVNIHTGSFPNGEIRGQI
                     SGVNTTINNNTTMIEHTTSP"
     gene            1897..3237
                     /locus_tag="VFI64_06700"
     CDS             1897..3237
                     /locus_tag="VFI64_06700"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HET7243014.1"
                     /translation="MSLVEDYINKIKKYNPTFNAFITILEKTALKEAETTEKRVKKGY
                     YKGPLDGIPYSLKDIIYIKGVRCTAGSKILKHFFPKRNAKCVSQLRRAGSIILGTTNL
                     NEFASGITGINPHYGSSINPWNKNHISGGSSGGSCVSVSCGMVPFSLGTDTGGSIRVP
                     SAYCGVVGIKPTYDLISRDGIVNLAPSLDNIGCITRSAWDAALVLKNLIQKDRLYHYP
                     KISNSGEDIFEEIGHKHRKLVVGIPPDYFFDDADLEIVRSFYQFVNVIESSGNHIKMV
                     SIKGVSKIEPAWTPIRLAEASEQHLRWIRTKASEYSEEVRTMIKNGLKIFAVDYIHSC
                     RSKNEIRNNFLKSLKIADILVLPTTTVTAPKYSSFVRDNKESSKIRSALLRNNIPFNI
                     TGLPAVSIPVGFDRFRIPIGVQIVGKPYQEGTILSIAFAFEQKYNSLAKFIPPI"
     gene            complement(3270..4349)
                     /locus_tag="VFI64_06705"
     CDS             complement(3270..4349)
                     /locus_tag="VFI64_06705"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HET7243015.1"
                     /translation="MVIDTIRTIKRLGKWSANRVIGRRRPLIAVFSLTHYCNFYCPMC
                     PFGDADKGSQLKLVRDKDLTTNQWKYIFDKVSKYCLWSIIEGGEPTSRPDFMDLVSYL
                     YSINMPITLITNCSLLHTIDLFQLKKYIQFVTCSIDSVYEESYCKVRGVSVKIFQKVI
                     ENLRLLTEVNIPHYFNSVITKYNTEEFIDQSYFDKAKEMGSNAVSLTFVEDRSDVPYS
                     LLPDKDTMVKVCESVLDYGRKHSSPQIMIPPQYFHQIIEHGRGMYDECGVWKSIFVNG
                     NGTVMVPCWKFDSPENIYNLLEQSVEEIWNAPEWDIAKTCHDCKVLGCIWYSSQPITT
                     FARNYMNGLSRMIGNQKPELKAELI"
     gene            complement(4443..4934)
                     /locus_tag="VFI64_06710"
     CDS             complement(4443..4934)
                     /locus_tag="VFI64_06710"
                     /inference="COORDINATES: protein motif:HMM:NF024986.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HET7243016.1"
                     /translation="MSAPDKQGWLELLTESKIRDFNEWRLTNLLVRPDISGMDFSNKD
                     LSGALLNGIRCVETKFTECNLSKTNLVQAEMTNSNFQGADLTEALLMYGNLKKSIFVD
                     TNLTRTNFMWAELRECDFSGSRMKKTIFVEAKMQNAKLDNVLLDTVYLKQANLEGNSW
                     ATG"
     gene            5259..5687
                     /locus_tag="VFI64_06715"
     CDS             5259..5687
                     /locus_tag="VFI64_06715"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HET7243017.1"
                     /translation="MAERKNRNPTPRIMIVDDEADILSVIKRGLESDKEFEVEAFSAP
                     DEAISNFETHPPNYYDLVITDIRMPNMNGFELYRHIKEADPSMRIAFITAFEINKAEF
                     IKVIPSVEVIDFISKPVSIANLKEKIRSMLPDYFINAPTM"
     gene            complement(5869..>6168)
                     /locus_tag="VFI64_06720"
     CDS             complement(5869..>6168)
                     /locus_tag="VFI64_06720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243018.1"
                     /translation="HGISFYFNDVPQITIQNLIEFLQSKYGGTVLHRQSRVFLQGSSE
                     FSDPKTIGQLANDISVKFNGPVELTIEFEKVTAEEQEKNLFNLPANKALPIVGPD"
BASE COUNT         1915 a         1160 c         1163 g         1930 t
ORIGIN      
        1 ttctcgaata tgttttcact tgtcctttat tgtttaagtg ctgattgtaa tcctccacct
       61 atacttaccc gttaatttca ttttttgttt ttcacttact atgctcatat gtttgacgaa
      121 cgattagtga ccatatcacg cgaattaaga atgcctcaat gggttagtcc atagaattca
      181 gaaacaatgg ggaacaggac ttctaatata tatggcattt ggacttccat ttattaactt
      241 gaatttttat taagggatca ttggtatgat gcaggagtgt gtataggaag tgtttttata
      301 ttctcattac aacatatccc cgatggcgca taaaataacg gcactatttt cgttttcact
      361 catgattttc agtttatcta ttcttcttgc cacaaccaca aagatatctt cagcagaagt
      421 cgcgcatgta cgtgaaatta cagccagtaa tagcacagtt tggtacggtg gggaaaaaat
      481 aggaaatctc gctgtcggat ttacatccca aggttacgag ccaacatctg gaggattggt
      541 gaatctcaca gcgcatgtag cacgatttcc tgcctcaggg agtgttcttg aaggctggct
      601 tattgatcct gacatacctt cttactttaa tttgacgttg ggtcaattcg tgaatggtac
      661 cttaaaattt gatcaatata tggttaatcc agcggtgtac aaattctttg ttatatcgca
      721 agaaccagta ggtgatactg acccgcgaat gtcaaatatc attcttggtg gatcggaatt
      781 tgccctggaa ccagaagata tagtagccgg aagtaagctg aaccttcctt aaaacaatat
      841 actatattac ttcgttgtgt aaataacaat ctgattaatg gaatagctag tcgtactagc
      901 ctatccttct ttaacttcta ggagttgtca agtcctttgg gaattactac tacaaatatt
      961 gatcgatctt aataatggag caaatttgtt atagacaata gtatccctct atatctcata
     1021 ttgaactatt atataactcg tcttcatatg aaattaatca tgtctataca gctaattcta
     1081 ttaatggctg tattggtaac ggctgtcttt tcagtgggaa ttacaactat cctgatgaat
     1141 ccaagctatg ctcaagagca gaggttcatt acatccctca cgggagatca agaagttcca
     1201 cctagcggtt ctgccgcaaa aggtagtgcc tggttcaaac caaataatga ttctatgtgg
     1261 tataaaatag acgtgacagg aatggatacg ataatggaag cccacatgca tatcggcaaa
     1321 agtggacaaa atggtgaccc cgtcgtaatg cttttccatt ctggacccac tagtccttta
     1381 aatggaacgt tgattcaagg tagctttagt gctgctgagt tatatggtcc tatgtcgggc
     1441 aggacgatat cccatctact ggataaaatg aataaaggag aggcttacgt caatatccat
     1501 accggctcgt ttcccaatgg agagatcaga ggacaaatat caggagtgaa cactacaatt
     1561 aacaataata caacgatgat agaacatact acgtctccgt gagctggacc tctgattaaa
     1621 ttggtgatga aatcgtaaaa caaatgggat ctagccgcac gacgaacatc aagagctgga
     1681 aggaaaatgg gtatattgac tccatttgtt cgtttttgat tgaggcacct atacggatag
     1741 aagttattgg agctcttcat gcccgtaaga tgagtctcat tacgtgttat tctaaaaaaa
     1801 agttataagt agactgacac tattattgat atcaagctaa atttcgctac cataagggaa
     1861 ctatcttgca aaatagaaac aggcgaactt tctcctattt ctttagttga ggattatatt
     1921 aacaaaatta aaaaatataa tccaacattc aatgcgttca tcacaatatt agagaagaca
     1981 gcgctaaagg aagcagaaac tacagaaaaa cgggtaaaga agggttatta caaaggacct
     2041 ctcgatggaa taccatattc actcaaggat attatttaca taaagggtgt aagatgtacc
     2101 gctggttcca aaatattaaa acattttttt ccgaaaagga acgcaaaatg tgtatcgcag
     2161 ttgagaagag cggggtccat tatccttggt actactaact tgaacgaatt cgcctctgga
     2221 ataactggga taaatccaca ttacggatca tctataaatc cttggaacaa aaatcacata
     2281 tcaggcggat cgagtggagg ttcgtgtgta tcggtatcct gtggcatggt ccccttttca
     2341 ctaggtactg ataccggcgg ctcaattcga gttccgtctg catattgtgg agtagtcggc
     2401 ataaagccca catacgattt gattagcaga gatggtattg ttaacctcgc accatcctta
     2461 gataatattg gatgtataac tagaagtgct tgggatgcag cattagttct aaaaaatttg
     2521 atacaaaagg atcgtcttta ccattatcca aagatctcaa attcaggcga agatatattt
     2581 gaagagattg gacataaaca tagaaaattg gtggttggca ttccccctga ttattttttc
     2641 gatgacgcag atctcgaaat cgtgagaagt ttttaccaat ttgtgaatgt tatcgaatct
     2701 tctggaaacc acataaaaat ggtttcaatc aaaggtgtta gtaaaattga gcccgcgtgg
     2761 acgcccatac ggcttgcgga ggcttcggaa caacatttga ggtggataag aaccaaagct
     2821 tcagaatatt ccgaagaagt taggacaatg atcaaaaacg gattaaagat atttgctgta
     2881 gactatattc attcatgtag atccaaaaat gaaataagaa ataattttct caaaagtctc
     2941 aagatagctg atattttagt tttgccgaca acaaccgtta ctgctccgaa atatagtagc
     3001 tttgtaagag ataataaaga atcatccaag attcgtagtg ctctcctgag aaacaatatt
     3061 ccatttaata ttacaggttt gcctgccgta agtattcctg tcggttttga cagatttaga
     3121 atcccaatag gcgtccaaat agttggcaaa ccatatcagg agggaacgat tctatctatc
     3181 gcatttgcat tcgaacagaa atacaattct ttagctaaat ttattcctcc aatatagaat
     3241 ggaggggtca ccgcgtcacg tgtcctagtc taaatcaatt ctgcttttaa ctctggtttc
     3301 tggttaccga tcattctcga taaaccattc atatagttac gtgcaaaggt agttattggt
     3361 tgagacgagt accatataca tccaagaacc ttgcagtcat gacaagtttt agctatgtcc
     3421 cattcaggag cgttccaaat ttcttctaca ctttgttcca ataagttata tatattttcc
     3481 ggactatcga atttccagca tggaaccatt actgttccgt taccattaac aaatatgctt
     3541 ttccaaactc cacactcatc atacattcct cgtccatgtt caatgatttg gtgaaaatat
     3601 tgtggaggta tcattatttg aggcgaagaa tgcttcctcc cgtaatccaa aacactttca
     3661 cagaccttta ccatcgtatc tttgtcaggc agcaaagaat atggaacatc tgatctgtct
     3721 tccacaaaag taagtgagac cgcatttgat cccatttctt tagctttgtc aaaataactc
     3781 tgatcaatga attcctctgt gttatattta gttatcacac tattgaaata atgtggaata
     3841 ttcacttctg taagtagtct tagattttct atcacttttt ggaaaatctt gactgaaacc
     3901 ccacgtacct tgcaatatga ttcttcataa acggagtcta tactacaggt tacaaactgg
     3961 atgtattttt ttagctggaa aagatcaatt gtatgtagaa gcgaacaatt tgtaatgaga
     4021 gtaattggca tgttaatgct gtacaggtaa ctaacaagat ccataaagtc gggacgactc
     4081 gtaggctctc caccttctat aattgaccaa aggcaatatt tggaaacttt gtcgaagatg
     4141 tacttccatt ggttagtcgt cagatcctta tctcttacaa gttttaattg gctaccctta
     4201 tctgcatctc caaacgggca catcgggcag taaaagttac aataatgcgt gaggctgaag
     4261 acagcgatta aaggacgtct tcttcctata actcgattgg ctgaccattt acctagacgc
     4321 tttattgtac gtatagtgtc aattaccacg agcaattgta ggatgcccaa atgtattaag
     4381 ctattcggca ggggtttaac agaaaggcag gaaatatgca aatgggtata ttaaattcaa
     4441 agtcaccctg ttgcccaaga gttgccctcg aggttcgctt gctttagata aactgtgtcc
     4501 aagaggacat tgtctaattt tgcattttgc attttggcct ctacaaatat tgtttttttc
     4561 attctggaac cactaaagtc gcattctcgt agctcagccc acatgaaatt ggttcgagtc
     4621 aaatttgtgt caacgaaaat agacttcttc aaatttccat acatcaacaa ggcttcagtc
     4681 aagtcagccc cttgaaaatt tgaatttgtc atttctgcct gaacgagatt ggtctttgag
     4741 aggttgcact ctgtgaattt cgtctccaca catcggatcc cgtttagtag tgctcctgat
     4801 agatctttat ttgaaaaatc cattccactt atgtcagggc gcacaagcag atttgttaat
     4861 ctccattcat tgaaatctct aatctttgat tctgtcaata attcaagcca tccctgttta
     4921 tcaggcgcgg acatctttct ttcggattta tcaattactt atatcaattt tcgccttagc
     4981 aagaagccag aagccaactc tttggcctac agccttaatt tggtggtcaa tctaactagt
     5041 tatcatcaat gacgagagaa gtaggagaca gatttttcta gttggctttg ctatctccga
     5101 tatgtcgaat caattgagct ggattgacga cggtgactat ccgttttcga tactttgaat
     5161 ctttctgcac agactctgtc ttcattaaga gtaataaata tactattttt gattgtgtat
     5221 tcacttaata tatatagata ttgtatgaat actatttgat ggctgaacga aagaaccgaa
     5281 atcccacgcc gcgaataatg attgtagatg atgaggcaga tattctatca gtcataaagc
     5341 gtggattgga atcagacaaa gaatttgaag tggaggcttt ctcagcgcca gatgaggcaa
     5401 taagtaattt tgaaactcat ccaccaaatt attacgattt agtaatcaca gatattcgta
     5461 tgcccaatat gaatggattc gaattgtatc gccacataaa ggaagctgat ccctcaatga
     5521 ggattgcatt tattactgca tttgaaataa acaaagcaga gttcatcaaa gtaatcccgt
     5581 cagtagaagt cattgatttc attagtaagc cagttagcat tgcaaacctt aaggaaaaaa
     5641 taagatcgat gctaccagat tattttatca acgcgccaac aatgtaaagt caattaactg
     5701 aaaaggaata ttgttttgtt ataattaatc tttaaaaaaa aggcaaatta cgactattag
     5761 tttcgcgagt ttcattaacg taaacgagat aaatcaaggt aattgccgaa aactagtact
     5821 cgtataaatt gcctaatcaa taaattaatt ggacaattaa tcagttaatt aatccggacc
     5881 tactattggt aatgccttat tggctggaag gttgaacaag tttttttctt gttcttccgc
     5941 tgttactttt tcaaattcta tcgtcagctc tactggtcca ttaaatttca cactaatatc
     6001 atttgctagc tgacctattg tttttggatc tgaaaactca cttgaacctt gtagaaaaac
     6061 ccggctttgt ctgtgcaata cagtaccgcc gtatttggat tgcaagaatt cgatcagatt
     6121 ctgaatagtt atttgtggta cgtcattaaa gtaaaaacta attccatg
//
LOCUS       DASSIK010000362         2830 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1259181, whole genome shotgun sequence.
ACCESSION   DASSIK010000362 DASSIK010000000
VERSION     DASSIK010000362.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2830)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2830)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2830
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1259181"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..283
                     /locus_tag="VFI64_06725"
     CDS             <1..283
                     /locus_tag="VFI64_06725"
                     /inference="COORDINATES: protein motif:HMM:NF038353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FxLYD domain-containing protein"
                     /protein_id="HET7243019.1"
                     /translation="GFYYIYGKVLNNGNETASNSVIIAAFYDKNGTTIDITKAMTEPV
                     NISSGSSASFSILMDKKEVSYKITNFSLIADSDQYLSPEQSVHIPKDHS"
     gene            complement(829..1383)
                     /locus_tag="VFI64_06730"
     CDS             complement(829..1383)
                     /locus_tag="VFI64_06730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HET7243020.1"
                     /translation="MLPRIDYIKQARTKLGMTQRELASLAGVSTSMINQIESGRCKPS
                     YDTAKKIFELLSTQEGKTALKARDICRMRVISVQKHETLHLAIERMRENSISQIPVFD
                     GPKVVGLLSEDVLARNIIEKEEKNFLRMPIVDVMEPPPPIVDLSTPAKALIPLVRFTK
                     CVLVSEKGEVIGIITVSDTLKLVE"
     gene            1791..>2830
                     /gene="prf1"
                     /locus_tag="VFI64_06735"
     CDS             1791..>2830
                     /gene="prf1"
                     /locus_tag="VFI64_06735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor aRF-1"
                     /protein_id="HET7243021.1"
                     /translation="MSQDTHPAKWDSVRKYKLTKIINQLSSITGHGTELVTVYIPPRK
                     PIFEIVAQLRNEAGTASNIKSDLTRTHVQDALSRTIEHLKLFKETPENGLAIFCGAIP
                     NSKGIGNEKIELYPVNPPKPIQINLYRCDDHFWTEHIKEMMKDDRVIGLLAIDNQEAG
                     LGILTGDRWEAIDSMTSGVAGKHRQGGQSARRFERLRDNELNEYYRRVASHAYKVFIE
                     QHKVSGLIVGGPGPTKENFLKAEHLDYRLLNNIIATMDCSYSGDEGIREIVDKLNSQG
                     ILSDYRLMEEKKLMKEFMTEVYSGKGLAIYGLQDVLKSLESGIVGTLMMIDEIPFVKI
                     EAKCNRCGNVRN"
BASE COUNT          918 a          522 c          559 g          831 t
ORIGIN      
        1 tggcttttat tacatatatg gaaaagtgct taacaacgga aatgaaactg catcaaattc
       61 tgttataatc gctgcattct atgacaagaa tggaacaaca atagacataa ccaaggccat
      121 gacagaacca gtaaatatct ctagcggatc ttcagctagt tttagcatac tcatggacaa
      181 aaaagaggtg tcctacaaga ttacgaattt ttcacttatt gcagattcgg accaatatct
      241 atctcccgaa caatccgttc atatcccgaa agatcactcg tgatttcaga acggtctaac
      301 ccagcgtgtg actatttgca ttaaatcacc ataaatacgc ctatcagata aattgtagaa
      361 acaaaatttc ttatataggt attcagatca actatacaat ggacatattt tcgccatcaa
      421 tattactggc tatattcccg tatctactaa tgggtagttt tccaattgca ggattgatat
      481 gggtaactaa atgggtactt caagacttca aacgcatgaa tcaacttaag cattaaagct
      541 tccaaaattc aggtatggtc taacaacctc tgttaacttt aaaagaccat ccatctatta
      601 tattgaattc ggattaaatg aagaatttct gacaattaat atatctaact taccatatcc
      661 tatttagttg atgaacgatc catctttaaa tgtgagaaaa tgtgccctat gcgaatgcga
      721 tctaccagga gacgctgaag ttagcatctg caatgattgc ataaagaatg ctgattgttg
      781 cgtaggtctt gaaaaatttg agaaccgttc ataagaaaat tggtcgcgtt attctaccaa
      841 cttgagggta tcactgacgg tgattatccc aatgacttct cctttttcac tcaccagaac
      901 gcatttggta aaccgtacca atggtattag tgctttggcc ggggtcgaga ggtcaactat
      961 cggaggcgga ggttccatta cgtcaacaat aggcatacga agaaaattct tttcctcttt
     1021 ctctattata ttgcgagcaa gaacgtcttc gctcagaagg cccacaacct ttggtccgtc
     1081 aaacactgga atttggctta ttgaattctc tctcatcctt tctatagcta aatgtagtgt
     1141 ttcgtgcttt tgaacagaaa taactctcat tcggcaaatg tctctagctt ttaatgcagt
     1201 cttaccttcc tgagtactaa gaagttcaaa aatttttttt gcagtatcgt aacttggttt
     1261 acatcttcct gactcaatct ggttgatcat agaggtacta acgcccgcta aagaggcaag
     1321 ttcgcgttgg gtcataccaa gtttggttcg agcctgtttg atataatcta ttctgggtag
     1381 cattgatatg aattatttac gttattacag ttttttatat taatctaaat aggaaatgtt
     1441 ttgtccctga acttcctagc tcgagtcgga agggatacag cgatctggtt gcttttatgt
     1501 ttactaccca agatgaattc aagttactgg ataaggagat tatttttctt agtcttaacc
     1561 aacaatatac agtttacttt tacacataaa tagctgaact gcaaatgcga tcgtttgacg
     1621 gcttccggga gtgagtgtaa ttatttatgg aatagtacta ctttaatcga agacaaatat
     1681 gtaaaattaa gattaaggaa acaaatacaa tgcttttttt tcggaatcat gtagtgcgct
     1741 gtttgataac cttatattat gctcatctca aaaaaaaccc tattgtaaat atgagtcaag
     1801 acacccaccc agctaagtgg gattcagtca ggaagtacaa acttactaag atcataaatc
     1861 agttatcctc cattactggt cacggaacag aattagttac agtctatatt cctccaagaa
     1921 agccaatctt cgaaatagtt gcccagctga gaaatgaagc tggaacggca tcaaatatca
     1981 aatctgattt gactaggacg catgtccagg atgcactaag taggactata gagcatctca
     2041 aacttttcaa agaaactccg gaaaatggtc tagcaatctt ctgtggtgct attccaaaca
     2101 gtaaaggaat cggtaatgaa aaaattgaat tatatcctgt taatcctcct aagccaattc
     2161 aaattaatct ctacagatgt gatgaccatt tttggacaga acatatcaaa gaaatgatga
     2221 aagatgacag agtaataggc ttgctcgcta ttgacaacca ggaagcagga ttgggaatat
     2281 tgacagggga tcgttgggaa gctatagaca gcatgacttc cggagttgca ggaaagcaca
     2341 gacagggtgg ccagtcagca aggagatttg aaagacttcg cgataatgag ttaaatgaat
     2401 actaccgtag agtggctagc catgcataca aagttttcat tgaacagcac aaggtaagcg
     2461 gtctaattgt gggaggtccg ggacccacca aggagaattt tctcaaagcg gaacacctag
     2521 actataggct tttgaataat ataattgcca caatggactg ttcatattcg ggggacgaag
     2581 ggataaggga aatcgtggac aagctaaact ctcaagggat cttatcggac tatcgactga
     2641 tggaagagaa gaaattgatg aaggaattca tgactgaagt atactcgggg aagggattgg
     2701 ccatatatgg actccaagat gttttgaaat cactcgaaag tggaatagtt ggtactctta
     2761 tgatgattga cgaaatccct tttgtcaaaa ttgaagctaa atgcaacaga tgtggtaacg
     2821 tcagaaataa
//
LOCUS       DASSIK010000363         2978 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_671499, whole genome shotgun sequence.
ACCESSION   DASSIK010000363 DASSIK010000000
VERSION     DASSIK010000363.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2978)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2978)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2978
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_671499"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..358)
                     /locus_tag="VFI64_06740"
     CDS             complement(<1..358)
                     /locus_tag="VFI64_06740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243022.1"
                     /translation="MVTDRLTSSIFEDIHSIYDLAYLMEEVRIMYKRDVKVSNDNIQI
                     DAKEGDISSIRRWIAKILSQHKLVEIQDSEISSYVSRALNRERIARPHDLSKIDIDFY
                     VRVDDYLSGLKERDREN"
     gene            572..1564
                     /locus_tag="VFI64_06745"
     CDS             572..1564
                     /locus_tag="VFI64_06745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication factor C small subunit"
                     /protein_id="HET7243023.1"
                     /translation="MTSESQNLSNLMWVEKYRPKKLDDIVNQKEIINSLKNLAKKPKE
                     MPHLLFAGPAGVGKTTTGLCLARELLGENWREDTLELNASDERGIKMVRERVKEFAGV
                     IKLDLGNKNDKLFRLIILDEADEMTSEAQTALRRIIEDSSKTTRFIIICNYLSQIIDP
                     IQSRCVVYRFKRITAEDVEEYLKLLCKKEGVKYEEKAIASILESTQGDMRHSINVLQG
                     AAVMGSVSTTTVQTSLGLSGKAKVADVIKLAIAGKFNEARIKLLELTMVYGMSEFDFL
                     KYANQIGYSMKLSHPEEFAALMAEYDHRLTTGAHPEIQLAALLAQLGKLGSKSN"
     gene            complement(1701..1973)
                     /locus_tag="VFI64_06750"
     CDS             complement(1701..1973)
                     /locus_tag="VFI64_06750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243024.1"
                     /translation="MASTIFRLQSHKFSSDNIQTTLVCSKCDEVFSKEFPLDLEGQTI
                     EFKCPVCGAPGETDLPYKSAEEREEFEEDFEEAEEEEGGEEFEEEY"
     gene            complement(2225..2800)
                     /gene="folE"
                     /locus_tag="VFI64_06755"
     CDS             complement(2225..2800)
                     /gene="folE"
                     /locus_tag="VFI64_06755"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003934 - GTP cyclohydrolase I activity
                     [Evidence IEA];
                     GO_process: GO:0042559 - pteridine-containing compound
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HET7243025.1"
                     /translation="MDKTSIRKKKIEKLIRQVLIELGENPDREGLIGTPRRIAEMYEE
                     IFSGYHMNSELDISFNEETDSIIARDIQFYSMCEHHMLPFFGKIHIAYIPSGKVFGIS
                     KLVRLVEKYSRRLQIQERLTKEIADEIMRMDVKGVMVVAEGEHLCMKMRGVRNNGIIT
                     TVANRGIVVQNEAREHLLALIYNSKSQTRGI"
BASE COUNT          912 a          586 c          537 g          943 t
ORIGIN      
        1 gattttctct atccctttct ttcaaaccgc taagataatc atctaccctt acgtaaaaat
       61 caatgtctat tttagacaag tcatgtggcc ttgcgatcct ttcccgatta agagcacgtg
      121 aaacataact tgatatctcg ctgtcctgta tttcaactag cttatgctgg gacaatattt
      181 tagctatcca tcgtcgtata gatgagatgt ctccctcttt agcatctatt tgtatgttgt
      241 catttgatac ttttacatcc cgtttgtaca ttattctcac ttcttccatt agataagcga
      301 gatcgtagat agaatgaata tcttcaaata tgctcgaggt aagtctatcg gttaccatct
      361 tgaggtataa agctttgtaa tctgttatat cttttggcag gacaattatt tttaagcttc
      421 aagtatacat gaatacgcca aggtggcctt ctaaatattt tccataataa ttccgtacat
      481 tttcaaaact cacgcaattt tcttgtttgt gaatcagaaa aggtacattg agaactgaat
      541 atatattgtg attaagaata tcatttgtct tatgacgtcc gagagtcaga atttgtcaaa
      601 cttgatgtgg gtagaaaagt atcgacccaa gaaattagat gatattgtca atcaaaaaga
      661 gataatcaat agcctgaaga atttggcgaa aaaacctaaa gagatgccac atttgttatt
      721 tgctggtcca gccggagttg gcaaaactac cacgggttta tgtttagcaa gagagttact
      781 tggtgaaaat tggagagagg atacgctaga actcaatgct tccgatgaga gaggtataaa
      841 aatggtgaga gaaagagtaa aggaatttgc gggggttatt aagctggact tgggcaataa
      901 aaatgacaag ctatttagac tgataatact ggacgaggcc gatgaaatga cctccgaggc
      961 tcaaacagcc ttacgaagaa tcatagaaga tagctctaaa accacccgat tcattataat
     1021 ttgcaattat ctttctcaga taatagatcc gattcagagc cggtgtgtcg tataccgttt
     1081 caaaagaatc acagcggaag acgtagaaga gtatctaaag ctgttatgca agaaagaggg
     1141 agtaaaatac gaagagaagg ctattgctag tattttagaa tcgacacagg gcgatatgcg
     1201 tcactcgatc aatgttcttc agggggccgc cgtaatgggg tctgtttcta caaccacagt
     1261 gcaaacctca ttaggtcttt ctgggaaagc gaaagtagca gacgttatta aattagcaat
     1321 tgcggggaaa tttaacgaag cgagaataaa attacttgaa cttacgatgg tatacgggat
     1381 gtccgaattt gatttcttaa aatacgctaa ccagataggg tactctatga agctgagtca
     1441 tcctgaagag tttgctgcat taatggcaga gtatgaccac aggttaacaa ctggagctca
     1501 tcctgaaatt caattagcag cacttcttgc acaacttggg aaactaggtt caaaatcaaa
     1561 ttaactattt cggctggcta aaccacgaac ccacacaata ttcaagactt atttaatctg
     1621 tataagaggc gattttaaca cagattctcc gactagccat agtccttgca aagagagaaa
     1681 aaatttctca atgaatttga tcagtattct tcttcaaatt cttcgccgcc ttcttcctct
     1741 tcggcctctt caaagtcctc ttcaaattct tctctctcct ctgcgctttt gtagggtaga
     1801 tctgtttcac ctggagcacc acagacagga cacttgaatt caattgtttg accttctagg
     1861 tccaatggaa attccttgga gaaaacctcg tcacatttag aacaaactag tgtcgtttgt
     1921 atattatcag aactaaattt atgtgactgt agtctgaata tggtactagc cattcttctt
     1981 acctatagga atattccttt tttataagcc ttatcatgaa tttactatct tagaaaatac
     2041 acatgtaagc cacgtaaata gtaccaaaat atggtaattt taatacgtcc tattataaac
     2101 attaattcaa gttagtcatg cgttccatac tcggagagac ctggagtcgc cagaatccga
     2161 gccaagttag atattcagag caatgatttg ttacagttta agattcacag cggtattgat
     2221 ttaattatat tccacgagtt tgtgatttag agttataaat caaggccagt agatgctccc
     2281 gcgcttcatt ctggacaact atccccctgt tcgcaactgt cgttattatg ccattattcc
     2341 taactccacg cattttcata caaagatgct ctccctcagc cacaaccata actcctttaa
     2401 catccattct cattatttcg tctgcaattt ctttagtcaa tctctcctgg atctgaagtc
     2461 ttcgagaata tttttctacc aaacgtacga gctttgaaat accaaaaacc ttaccagaag
     2521 ggatgtacgc gatgtggatc ttaccaaaga atggtagcat gtgatgctcg cacatactgt
     2581 aaaattgtat atctctagct ataatagaat ctgtttcctc attgaagctg atgtccaatt
     2641 cagaattcat atgatagcct gagaagatct cttcatacat ctctgctata cgtcgcgggg
     2701 ttccaatcaa cccctcccga tcaggatttt cacctaattc tattaatacc tgtctgatta
     2761 atttttcaat ttttttcttt ctaatcgatg ttttatccat cttctttcat atctatctat
     2821 gatttgccta tctagcacct atttgtttat gtagctgagg tataattctt acctcgggat
     2881 ataaaggata cacgatatca tagaaattca ataatctttc caatttgggc tcatctatac
     2941 cataactggg ttgaatcaca aatccagata tattcgag
//
LOCUS       DASSIK010000364         2027 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_366714, whole genome shotgun sequence.
ACCESSION   DASSIK010000364 DASSIK010000000
VERSION     DASSIK010000364.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2027)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2027)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2027
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_366714"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(279..542)
                     /locus_tag="VFI64_06760"
     CDS             complement(279..542)
                     /locus_tag="VFI64_06760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HET7243026.1"
                     /translation="MKYRSRTEIVAMILEAANGGATKTKIMYKAFLSYAQLREYLSVL
                     IENNLLEYLEGSQTYKTTEKGLNFLKMHNEIGELLQTTAKEEK"
     gene            complement(755..1048)
                     /locus_tag="VFI64_06765"
     CDS             complement(755..1048)
                     /locus_tag="VFI64_06765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HET7243027.1"
                     /translation="MPVAILPDISEQHCIGCALCVEICTALGPDVLRVKPVEGWKRGK
                     AFVFYPERCISDGACIGVCPTKAIFWMRPMDYTPGQPIPLKKNGLFAKGWEEG"
     gene            1216..1683
                     /locus_tag="VFI64_06770"
     CDS             1216..1683
                     /locus_tag="VFI64_06770"
                     /inference="COORDINATES: protein motif:HMM:NF014678.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF192 domain-containing protein"
                     /protein_id="HET7243028.1"
                     /translation="MPLIVGTVVLGTLGLLFIPESIRDKNIGFPNGTLSIDNKIVKVE
                     VADSPVAKQRWLTFREDKLPFDSAMILVYNKSDLYPVWLLNIEFNVDLLWLDEQANIV
                     YIVKNAPPCKTALDATGCTYKNTKPAKYILAATAGFIDFYNITNHSRIKIISI"
     gene            complement(1791..>2027)
                     /locus_tag="VFI64_06775"
     CDS             complement(1791..>2027)
                     /locus_tag="VFI64_06775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-coenzyme A synthetase"
                     /protein_id="HET7243029.1"
                     /translation="RQDLIKHIRNTIGSIATPDEIHFVARLPKTRSGKIMRRLLKSIS
                     ANSDSIGDVSTLEDEASVEEIKQAYHDLHNTLRK"
BASE COUNT          625 a          342 c          366 g          694 t
ORIGIN      
        1 ggtccaaaag aggagtctgc tgtggccatc ggtagtgata gtgacagtga agttaattgg
       61 ctcaatgagg taattgcaaa agaaatcaaa gacgatcagt aacagattgt tagtaagagg
      121 tattctattt tttgattttt aacctcatgc ttatcggtct gtcagaatag caaatagcgc
      181 acacataata tcaacatata tgtaacaaga tttgaattgc tactagctaa taatagaaat
      241 gaaaaataaa atagtaaatt tttgtttgtt tatttgaatt acttttcttc ttttgctgtt
      301 gtctgaagaa gctcgcctat ttcattatgc atcttaagga agtttaatcc tttctcagta
      361 gtcttataag tctgtgaccc ctctaaatat tccagaaggt tgttttcaat aagtacagaa
      421 agatattctc ttagttgagc gtaactaaga aatgccttgt acatgatttt tgtttttgtt
      481 gctccgccat ttgcagcttc taggatcatg gctactattt ctgttctgct tctgtatttc
      541 acattttaaa tacattgaat ttgtttattt taatatattg atgcaataca atataacaat
      601 attatagagt ttgaactcat cagctatatc tattaactag aaaataagtt aagtggtaga
      661 tgacagtcag tagaaataag tggtatttac tacaaaattt aggtaaacaa ctaaaagttg
      721 actaaaaaat aaaagttaag gaattctttg aagattaacc ttcttcccag ccctttgcga
      781 acagaccgtt cttctttaat ggaattggtt gacctggtgt gtagtccatt ggcctcatcc
      841 agaatattgc ctttgttgga cagacgccga tacatgcacc atctgagatg catctctctg
      901 gatagaagac aaatgcctta cctcgcttcc atccttcgac tggttttact cttaatacat
      961 ctggaccaag agccgtacaa atctcgacac acagtgcaca gcctatacag tgttgttcgc
     1021 taatatccgg aagtattgct actggcattt aattctcaaa aacaatccat agcgaaacta
     1081 tttaaacact atgtcatttt tataacactg atataaaaat tgcgtaattt gatgactttg
     1141 attgttaatt tcctaagcaa catacaaatg tttttaaaat agggttatgg tgtggtcagc
     1201 aagactaggg ttttattgcc attaattgta ggaacggttg tattaggaac ccttggtcta
     1261 ttgttcattc ccgagtctat tagagacaaa aacataggtt ttccaaatgg tactttaagc
     1321 atagataata aaatagtcaa ggtagaagtg gcagattctc ctgtagctaa acagaggtgg
     1381 ttaacgttta gagaagataa acttccattt gactctgcta tgatattggt gtacaacaaa
     1441 tctgacctat atcctgtttg gcttttgaat attgagttca atgttgactt actttggctt
     1501 gatgagcaag caaatattgt gtatattgtg aagaatgcgc caccgtgtaa aacggcatta
     1561 gatgctactg gctgtactta taaaaataca aaacctgcaa aatatattct tgcagctacc
     1621 gcaggcttta tagactttta taacatcacc aatcattcta gaatcaagat aatttctata
     1681 tgaaccatta attcatctac aaatcgttat tcgcttagtt ttctttgatg ctaaatagga
     1741 gttgtatttt gagatcaaat aaataagcta ggagtgctag caggaggaca tcattttctc
     1801 aatgtgttgt gtaaatcatg atatgcctgc tttatctctt caactgatgc ctcatcttca
     1861 agggtactta catcaccaat gctgtccgag ttagcagata tagactttag taatctccgc
     1921 attatctttc cactgcgtgt ctttggaagg cgtgcaacaa aatgaatttc gtctggtgta
     1981 gctattgatc cgattgtatt tcgtatatgt ttgattagat cttggcg
//
LOCUS       DASSIK010000365         2116 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_671882, whole genome shotgun sequence.
ACCESSION   DASSIK010000365 DASSIK010000000
VERSION     DASSIK010000365.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2116)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2116)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2116
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_671882"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..192
                     /locus_tag="VFI64_06780"
     CDS             <1..192
                     /locus_tag="VFI64_06780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243030.1"
                     /translation="KTSSFPSGFTVNKTGTQQLLTNLLNSTVQNITAVTTFTNLGKTL
                     AMSNPLKVSLNLGQLTKGP"
     gene            complement(1275..>2116)
                     /locus_tag="VFI64_06785"
     CDS             complement(1275..>2116)
                     /locus_tag="VFI64_06785"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HET7243031.1"
                     /translation="SGGEPDGRSGILRVTQDGQPVGEGILGNEMPLRLYYAYGIRNSF
                     GIGFDPVTGKLWDSENGPGDSDEINLVEPGFNSGWQEVQGLSSLENGFDPSTLVDFGG
                     KGKYREPELVWQNTVGPTSVAFLNSDKYGSNYQNDMFVGDVHNGRIYHFDLTQDRTHL
                     MLNGLLASKLIKNPRMEGLDQIIFGEGFGGITDIKVGPDGYLYVVSIGLGKIFKIIPS
                     ISDSSSASSSKQSYNNSSGKYPIENSAGEVKTGSSIENKESTKVPITSNVPESKVPGN
                     PFG"
BASE COUNT          656 a          447 c          362 g          651 t
ORIGIN      
        1 aagacctcat cgtttccatc tggatttaca gtcaacaaga caggtaccca gcaactttta
       61 accaacttac tgaattcaac agttcagaat attacggctg tgaccacttt tacgaacttg
      121 ggcaagacgc tggcaatgtc caatcccctt aaggtctctc tcaatttagg acaattgaca
      181 aagggcccat aaatagtcaa taacgatatg acatcctatc gatgtcaagt atcgtagcta
      241 atttgatata attagatcaa tagtgtaaac gtgaatgctc aatgtaattt ctgtcatcct
      301 cagcaagaat taattctcta tgacactttt cgcatacgaa gtacttgaca tcggacttta
      361 gcgcctcccg acaaacccta cagtagcgtc tcacatgatc attttgggag tggtcttctt
      421 taagagtttg tacgagacta taagatttag aatctactgt tgaccaacta cgtcttgttt
      481 cctgtttcaa tacacgcttt cactgataat ggaaatggtt catcttgaca tatactgact
      541 gactgattga ttgattggtt agtttattcc agatagataa aataataata accagtgagc
      601 cggtattcgt gagaaacact catgtttttg ttcttattta atcactttct ccaaaaaaat
      661 acttacatac attgcgttta gaattgacat tgaacttcga aggaagcaaa actatgtgac
      721 aatgacgaat aaaacaaaaa caaataacaa attcctaggg aactaaagtt acaaagaatc
      781 tacagtaatt ttaagtccat ctgcttactg aataaactaa ttgaaagaag tagcaactag
      841 ttttaatagc taaacagacc gacgaataat gtgcaaatat ccaacaagac aaggagtaat
      901 aggtgcttta acgaaattag ctacaacttt aggacaaaga tgttcgagag caagaacaca
      961 tcttatacta catacagcca ggcaagctta agccgatgga aatgtgacaa atgtagcaag
     1021 atgtttgcta cctttaagga actgaagagt cacaagaatg agtttcactc ttattaactg
     1081 gataaaaatc taaattaatt tttattctcg gtcccgaaaa acaagtgaaa aatcgaaagt
     1141 aaccatgatt gcatattctc gtacggttgc gttatgttga caatggtccc tctaaaagta
     1201 tctaaacgct acaagcaaaa atcaatttgc ctttgtttgt gtgacaacta tggtgcttat
     1261 agagggattt gacgttatcc aaatggattt cctggcacct tcgattctgg gacgttactc
     1321 gttatcggta ctttggttga ttccttattc tcaattgaag aacctgtctt tacctctcct
     1381 gctgaatttt caattggata ttttccgcta ctattattat aactttgttt gcttgaagat
     1441 gcactggaac tgtcagaaat tgatggtatt attttaaata tcttacccag tcctatcgaa
     1501 acaacgtata gatatccatc aggccctact ttgatgtccg taataccacc aaagccctct
     1561 ccaaatatta tttggtcaag cccctccatt ctgggattct ttatcaattt gcttgccagt
     1621 agtccattga gcataagatg tgttctatct tgggtgaggt caaagtgata tattctcccg
     1681 ttatgaacgt cacctacaaa catatcgttc tgataatttg agccatactt gtcagaattt
     1741 agaaatgcaa ctgaagtagg acctacggta ttttgccaga ctaattcagg ttcacgatat
     1801 ttaccttttc caccgaaatc taccagggtc gatggatcaa agccattttc caaggaactt
     1861 aaaccctgta cctcctgcca gccgctgtta aagcctggct ccaccagatt aatctcgtca
     1921 ctgtctccag gaccattttc tgaatcccat agcttacctg tcacagggtc gaatcctatg
     1981 ccgaagctgt tccttattcc ataagcatag taaagacgta aaggcatttc attacctaat
     2041 ataccttccc cgaccggctg accatcttgt gttactctca atataccgct tcttccgtct
     2101 ggttctcccc cagaat
//
LOCUS       DASSIK010000366         4604 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_581370, whole genome shotgun sequence.
ACCESSION   DASSIK010000366 DASSIK010000000
VERSION     DASSIK010000366.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4604)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4604)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4604
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_581370"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..414
                     /locus_tag="VFI64_06790"
     CDS             <1..414
                     /locus_tag="VFI64_06790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243032.1"
                     /translation="FDPAGGVAYMAHIGGFVVGLGTGYLWKTLIFQNPVSFQPKRQIF
                     KNRPNMAEMGIGTQPEIIKGPDFYEIIAEVRGLTGISEIKTDYNPDTKIMNIYTPRSN
                     EPEVSVKLPDDASDLKVDQVQYLNGILRIRLVKQI"
     gene            complement(651..1019)
                     /locus_tag="VFI64_06795"
     CDS             complement(651..1019)
                     /locus_tag="VFI64_06795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243033.1"
                     /translation="MDYHKSFVKHPLSNTDGLTVEDVLHLFFDVITGNDYPDGDEWFG
                     IEYLFPHNIKLPDNLVGAEYFTTIYVAETKHYWRHRELVRFKYGKSKKLSESLEFINR
                     KYRELSKALYDSSVMDQITK"
     gene            complement(1250..2317)
                     /locus_tag="VFI64_06800"
     CDS             complement(1250..2317)
                     /locus_tag="VFI64_06800"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HET7243034.1"
                     /translation="MMRNTSISFNPISYVSVFIVVVTSVCLFGIGSIQSQIINAQPQP
                     QANLTSTEQQHLLDGISFQIDNVTFSHHMATVNGIQLHYVMGGKGEPVVLLHGYPQSW
                     YEWRHVMPALAKNYTVVAVDLRGFGDSSKPMTGYDGKTIAEDIYQLMTQLGFNKIFLA
                     AHDVGSQPAFSYTAEHPNNVTKLVIMDFPYPGFLPAAFGQNGPWWFSFYQTRDIPEAL
                     IQGKEREYISWFMRGLAYNPAAITDQDVDVWASHLVAPGGLRGSLEHFRAFPIDAEQN
                     KETAKAKITTPVLALGGDIYPALGGDYPGNFAYSSLQSLASNVTGITVPLSGHWIPEE
                     QPAFTIDQLFKFYGNSNNGSK"
     gene            2660..3517
                     /locus_tag="VFI64_06805"
     CDS             2660..3517
                     /locus_tag="VFI64_06805"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HET7243035.1"
                     /translation="MSATDPKQYKETQRHSWDSVAHGWEKWWRAIEIGAGKVSKRLIE
                     LASIKIGSKVLDISTGIGEPAITAAREVGNTGQVLATDISSEMLSIAKQRAINAGLQN
                     VIVFKQGDTGTIELSNSTFDAALCRFGLMFLPDLDTALLNIYSSLVNGGRFAAAVWAS
                     PEKDGLFTSTMNTIMKETHTSPPPAGAPGPFSLSDASMLRNYFVNAGFKDVTIERMIV
                     TFDFASSKEYASFVHETAGPLHEMLSNESPDRRQKILEAVSESARKFADNTGIVKFSN
                     DAICIMGQK"
     gene            3660..4073
                     /locus_tag="VFI64_06810"
     CDS             3660..4073
                     /locus_tag="VFI64_06810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243036.1"
                     /translation="MYGIVGLIVLLPLIGLLAVSLLPISTYAITNDNNTGDFVVSNTT
                     ILSPQNNDKAITTQTILGILKNPSNKSIDNVDVFIQAFDSNNGLIGFNNSTLSSIIDS
                     LGVREELLRTLQSPFQISVDTSVDDIFDHYKLMID"
     gene            4239..>4604
                     /locus_tag="VFI64_06815"
     CDS             4239..>4604
                     /locus_tag="VFI64_06815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243037.1"
                     /translation="MNNFISFAVVVFMLSVPLFSLSAFGADNVTSNKSQITEDQFVTY
                     DNSTRGIKIDYPKGWTVIDQFGLGFFSPKENDSDTFREGLLVSKGPHGNQSIDKLAAG
                     VLAIYNSSLPNFKLIESKGL"
BASE COUNT         1528 a          868 c          866 g         1342 t
ORIGIN      
        1 tttgatccag cgggtggtgt agcttatatg gctcatatag gaggtttcgt agttggcttg
       61 ggaacaggat atttatggaa aacgctcata ttccaaaacc ccgtctcttt tcaacccaag
      121 cggcaaattt tcaagaatcg acctaatatg gccgagatgg gaattggtac ccaacctgaa
      181 ataataaaag gaccagattt ttatgaaata attgcagagg tacgaggctt gactggaatc
      241 tcggaaatta aaacagatta caatcccgat acaaaaataa tgaatatata tacgccaaga
      301 tcaaatgagc ctgaagtcag tgtaaaattg ccagatgacg catcggatct aaaagtagat
      361 caagttcaat atctaaatgg aatattgcgg atccgtttgg taaaacaaat ttaggccttg
      421 accaaaaaat ttactatact acgaacgtta tctgaatata tgacataatc tgaatacata
      481 caacataata ggataattgg cgaatctatc gatctatcta tctatgaatg gtaacaatat
      541 gtcttttcag gcgcgcaagg tcaatatgat caatatgatg atttactact tgtaacatgt
      601 aatgagataa aaactaccca acaataataa ttcactcaac agtctggaat ttactttgta
      661 atttggtcca tgactgaaga atcatagagc gctttgctta attccctata tttcctattt
      721 atgaactcca gtgattcaga aagtttcttt gacttaccat acttaaatcg aaccaactct
      781 ctgtgtctcc aataatgctt tgtttctgca acataaattg ttgtaaaata ttcagctcca
      841 acaaggttat cgggcaattt aatattatgc ggaaataggt attcgattcc aaaccactca
      901 tctccatcag gataatcgtt gccagtaatt acgtcaaaaa atagatgcaa aacatcttca
      961 acagttaaac catcagtatt actcaaagga tgcttaacaa aggatttatg ataatccata
     1021 ttcattaatt ccacctcaaa gtatgttttt attatagctc ggcgaaagat ttcattcgac
     1081 tctttgaggt tcaaagatag tataagaagg aaattactat tttataatct attaacaagg
     1141 aggagtaagt tattgacata tcactagtga tacttgatta attttaattt gatacagcta
     1201 tgaatgaaat tacaccatta tattctcata aagtgctact tgaattcact catttactgc
     1261 cattattact atttccatag aatttgaata gctggtctat tgtaaaggct ggctgctctt
     1321 ctggaatcca atgtcctgaa agtgggactg tgatgccagt tacatttgag gctaacgatt
     1381 gtagtgaact gtatgcaaag ttaccaggat aatcgccgcc taaagctgga taaatatcgc
     1441 cacccagtgc taatacgggc gttgttatct tggccttggc tgtttctttg ttctgctctg
     1501 catcaatagg aaaagctctg aaatgctcaa gcgatccgcg taatccaccg ggagctacaa
     1561 ggtggcttgc ccatacgtca acatcttggt ccgtaattgc agccggatta taagctaatc
     1621 ccctcataaa ccatgaaata tattctcgct ctttaccttg tataagagct tctggtatgt
     1681 cacgtgtttg gtaaaaagaa aaccaccaag gcccattctg accgaatgct gcaggtagaa
     1741 agccggggta tgggaaatcc atgatcacca atttggttac gttattcgga tgctccgcgg
     1801 tatatgaaaa cgctggctga cttccgacat catgtgctgc taggaaaatt ttattaaaac
     1861 ctaactgagt catcaattga taaatgtctt cagcaatagt cttgccatca taaccagtca
     1921 ttggttttga agaatcaccg aatccccgaa gatcgactgc aactacagta taattcttgg
     1981 ccaaagctgg cataacatgt cgccattcat accacgattg tggatatcca tgcaataaaa
     2041 caacgggttc tcctttacca cccatcacat agtgcaactg aattccattc acagttgcca
     2101 tatggtgtga aaaagtcaca ttatcaatct gaaaagatat accatccagt agatgttgtt
     2161 gttcagtgga cgttagatta gcttgcggct gtggttgtgc gttaataatt tgagactgga
     2221 ttgatccgat tccaaaaaga cagacgcttg ttacaacaac tatgaaaact gaaacataag
     2281 agatgggatt gaatgagata gaggtatttc tcatcatact attggttcga tatttgtatt
     2341 taagtattat caggattcaa taaaaataga ctatatgagt acccaaagac ttttggaaat
     2401 caaaaaccaa aaacatgacc accgtcattt actaatatga cgatacattt tttagcatac
     2461 aagaagccta ctcaatagtc ccagctagtc tatgttacct tctatgagta actatctatc
     2521 taagttaata tgacgaaaca aactcaacat ttgcctttct tgctacacgg ttcaaagaat
     2581 gaagagattc caagttaact aatgtagtat gaaccaaaaa tgatattaac gatagacacc
     2641 ctgtcagact agaaattaat tgtcggccac agaccctaag cagtataagg agactcaacg
     2701 ccatagctgg gatagcgtag ctcatggttg ggaaaagtgg tggagggcaa ttgagatagg
     2761 tgctggaaaa gttagcaagc ggttaataga acttgcttca ataaaaatag gttctaaggt
     2821 cctagacata tcaacaggta ttggagaacc agccattact gccgcaagag aggtaggcaa
     2881 tactggtcaa gtattagcta cagacatttc atcagagatg ctgtctattg cgaaacagag
     2941 agccatcaat gccgggttac agaatgtgat tgtattcaaa caaggagata cagggacaat
     3001 cgaattatca aattcaacat ttgatgcggc actatgcaga ttcggattga tgtttttacc
     3061 tgatcttgac actgccttat tgaatattta ctcatcattg gtaaatggcg gtcgctttgc
     3121 agctgctgtc tgggcgtcac cagaaaaaga tggtctattt acctcgacaa tgaataccat
     3181 aatgaaagaa actcatactt cgccgcctcc agcaggggcc cctggaccct tcagcctatc
     3241 tgatgcgagt atgcttagaa attattttgt caacgctgga tttaaggacg ttactattga
     3301 aagaatgatc gtgacgttcg attttgcatc atcgaaggag tatgcaagct ttgtacatga
     3361 aacggccggt cctcttcacg aaatgctatc gaatgaaagt cctgatagaa gacaaaagat
     3421 attagaggca gtttctgaat cagcgagaaa atttgcggat aacacaggca tagtcaaatt
     3481 cagtaatgat gctatatgta taatgggaca aaaataacca aactcgagta actaactgtg
     3541 ttttacctat ttcggctgac ctttgttaac aacattcagt ggtctcaaga caaaatcaaa
     3601 ggaagacaca gatcgtcgtc tacagaaaat ttaaagacta gcagaacaga cagtagttta
     3661 tgtatggaat tgtaggttta atcgtactct tacctttaat tgggctattg gctgtgtcac
     3721 ttctgccaat atcgacatat gctataacaa acgataacaa tactggagat ttcgtagttt
     3781 ctaatacaac aattttgagc ccccagaata atgacaaagc tatcacaaca cagactatct
     3841 tgggcatact gaaaaatccg tccaacaaaa gtattgataa tgtggatgta ttcatacaag
     3901 cctttgattc gaataatgga ttaattggat tcaataactc cacgctgtca tcaataatag
     3961 attcgttagg cgtaagagaa gaattactta gaacgctcca atcaccattt caaatatctg
     4021 ttgatacaag tgttgatgat attttcgacc attacaagtt aatgatagac taggcacgtc
     4081 ctcacaaaac attaccttgt taccaatggt attgtcagca cagatgctat aaagtttgta
     4141 taatgtcaac cagactttcg gattaaggta agaacctacc aacaaaaggg tctttcaata
     4201 agcttaactt atatatacaa aaaattatct tcccgtaaat gaataatttc atatcatttg
     4261 cagtagttgt ttttatgcta tcagtaccac tattttctct atcagcattt ggagcagata
     4321 atgtcacctc gaataaaagt caaataactg aggatcagtt cgttacgtac gataattcta
     4381 cacggggaat aaagatagat tatccaaaag gatggactgt aatagatcaa ttcggtttgg
     4441 gatttttctc cccaaaagaa aatgattctg acacgttccg agaaggatta ctcgtatcca
     4501 aagggcctca tggaaaccag tcaatagata agttggcagc tggagtactg gcaatctaca
     4561 attcatcgtt accaaacttc aaactcatag aatcaaaggg attg
//
LOCUS       DASSIK010000367         2129 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1374585, whole genome shotgun sequence.
ACCESSION   DASSIK010000367 DASSIK010000000
VERSION     DASSIK010000367.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2129)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2129)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2129
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1374585"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..615
                     /locus_tag="VFI64_06820"
     CDS             <1..615
                     /locus_tag="VFI64_06820"
                     /inference="COORDINATES: protein motif:HMM:NF039315.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5996 family protein"
                     /protein_id="HET7243038.1"
                     /translation="EFYQETMAALRSLDMPVTIWTTPVEVQDRTPFEEDQKHAAYDPE
                     YAQRVWRILVQTSRVLTEFRCQFIGKVSPVHFFWGAFDLAVTRFSGRTAPSHPGAPNM
                     ARFVAIEAYSHEVSSCGFWPGGGPVDEPVFYAYAYPEPQGFKDYSIQPPEAFYHTGMA
                     EFLLPYDVVRTAKSPDAVLLSFLQSTYEAEAMTAKWDRHALERH"
     gene            complement(728..1126)
                     /locus_tag="VFI64_06825"
     CDS             complement(728..1126)
                     /locus_tag="VFI64_06825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243039.1"
                     /translation="MSGDDNLSDKDDRLIQRYDTILKESALLTTFSGILFGFLLNISV
                     NTSRNFSLIDIIVTIIALYSITIAASLFVMPVIYHHVQYPYGNWHKFKVRSHRFILSG
                     LIPAGVTLYLGLFFFICYSGLEKDKIIRVQ"
     gene            1903..>2129
                     /locus_tag="VFI64_06830"
     CDS             1903..>2129
                     /locus_tag="VFI64_06830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243040.1"
                     /translation="MVLLFPNDFIDILAQEIETWKGFADTLRGDNRSLFLQMLEQCCQ
                     YEIAINSKGEYYSAESFLMALIFLKHKIINI"
BASE COUNT          667 a          377 c          415 g          670 t
ORIGIN      
        1 gaattttatc aggaaactat ggccgccttg cgatcgcttg atatgcctgt aaccatctgg
       61 actacgccag tcgaagtgca agatcgaacc ccatttgagg aggatcaaaa acatgcggcc
      121 tatgatcctg aatatgcgca gcgagtctgg cgaattcttg tgcagactag tagggtgctt
      181 acggagtttc gttgccaatt cataggtaag gtgagtccag tacatttttt ctggggggct
      241 tttgatctag ccgtcactcg cttttcggga cgtacggcgc cttcgcatcc aggagctccc
      301 aatatggcac gttttgtagc aatcgaagcc tattcgcacg aggtgagtag ttgtggtttc
      361 tggcctggcg gcgggcctgt agacgagcca gttttctatg catacgccta tccagagcct
      421 cagggcttca aggactactc catccagccg cctgaggcat tctaccatac agggatggca
      481 gagttccttc taccctacga tgtggtccgc accgcgaagt cacctgatgc agtcttgtta
      541 tctttcttgc agagtaccta tgaagcagag gcaatgactg ccaagtggga tcgacatgca
      601 ttggaacgtc attaaatggt gtagtatttc tccatagcgt aaaataagat aggaaacgat
      661 aatattgtta ttttctaaaa catagtaaca ttacttcgca ttcgtgttct cttcaaagat
      721 cccgaaatta ttgaactctg ataattttat ccttttctag ccctgaataa caaataaaga
      781 agaataaacc caaatataga gtgacacctg caggaattaa gccagaaaga ataaacctat
      841 gacttctaac tttgaatttg tgccaatttc cataaggata ttgtacatga tgatatatta
      901 caggcatgac aaatagagac gcagcaatgg taatagaata taaagcaata atcgtgacta
      961 taatgtcaat aaggctaaaa ttgcgagatg tgtttactga tatatttagt aaaaatccaa
     1021 agagtattcc tgaaaaagta gttaatagtg cactttcttt tagtatggtg tcataacgtt
     1081 gaatgagtct gtcatcttta tctgacaagt tgtcatctcc agacatcgta actcttccat
     1141 attcaaagtg aaatccatag ttgatataat ttgcgcaact tatgttcgtc tttattcctc
     1201 gtaaacaaga ataattaaat aaattacatc gttaagcccc tcgaccattg gatgaggtta
     1261 aatgtttttc aactttgggt attgatgtta tatgtgggga gtgattgaga atcaatattc
     1321 ctacatattt tgaatgttcg agtccttcca ttaagtgatt gtttaatcgt gtatcgataa
     1381 ggaaatgcga gttggaaaaa tatgtaagat gttaatttgg tatttgataa cataaatacg
     1441 ccatattatt ccggacttcg gatcttacct gctataatgg cagaagggtc tagaattttc
     1501 acagacgcaa ataataaaaa aattcagata tggccttcgc ttcctctcat atcctctccc
     1561 tctctttcgg tagttcttcc atttaatagt ataaaataga ctagaattaa gctcatgtca
     1621 aactataaaa tgatagatgt aaagaaatct atctccatcc aacacaaaca atcttgataa
     1681 aaatgatagg aagatattcg atgagctgtt ttcaatttca cgtctttatg atagcgcttg
     1741 ctcaaattgt gctagaccgt tggtaataca gtgtatcttg atgtcaatta tatttcatta
     1801 ttataggcag ttgataggat caagtaaaga taaactatat cacaaaaaag aaagtatcaa
     1861 accaaaactc gatgaactaa tcaattttaa ttagttgaga ttatggtgtt attatttcct
     1921 aatgatttta ttgatatttt agcacaagaa atagaaacat ggaagggttt tgctgataca
     1981 ctgcgtggag ataataggag tttattttta caaatgcttg aacaatgttg tcaatatgaa
     2041 atagcgatta attcaaaggg agaatattac tctgccgaat ctttcttaat ggctttgatt
     2101 tttctgaaac ataagataat taatatatt
//
LOCUS       DASSIK010000368         3720 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_77290, whole genome shotgun sequence.
ACCESSION   DASSIK010000368 DASSIK010000000
VERSION     DASSIK010000368.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3720)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3720)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3720
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_77290"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1345
                     /locus_tag="VFI64_06835"
     CDS             <1..1345
                     /locus_tag="VFI64_06835"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HET7243041.1"
                     /translation="FVNKYFPDEIDLKESIRNSANAFFQTSNKLVDLRQSALASVPTL
                     SPSHILDALTIAKETAENALFKAIDSAIANEIGEVQDRSKAVDEAINSSSLVTLSSII
                     VSVIVAVVFGLFFSRYISIPISNLKQASIQIGKGDYVTACKFLSKTHRGDEIGKLSSE
                     IEKMRQSIESMKTNLDALVDQRTKELEIKNQELFEREKDLERINIELVKTELAKEEFV
                     SMVSHELKTPLTPLKMYAEILLKTNRFGVLNEKQLKAVKMILNNVSKLELLINDIFDV
                     YKLDIGRLKLNKKSIEVSRLVQENVAELEPLTDDKQIEFKTEIIPPSDKVNVLCDQKR
                     IEQVIANLVKNSIDFVPKTGGRITIRAETDETTQNVTFTVEDNGIGIPVDKMDNLFKT
                     FYQVDTSLTRKHGGTGLGLVICKGIIENHGGNLWIDRNYTHGKSIKFTLPIASNL"
     gene            1696..2229
                     /locus_tag="VFI64_06840"
     CDS             1696..2229
                     /locus_tag="VFI64_06840"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HET7243042.1"
                     /translation="MKMEQLELVHTSRFISIMLFCALSALLVSTPAFAQQTNFGAILS
                     GKNLSPPVKTIASGTAKFNVDAQGNMSYQLDVKNIKGVIGAHIGLQNGTDLAQVFNPY
                     IEIAGKSEIPTGVVNGQLSKGVLTTRDLSGTLEGKNVTDLTKLLNTGSVYVTVRTQAN
                     ENGEIQGQVTPSNTTGQ"
     gene            complement(2270..3058)
                     /locus_tag="VFI64_06845"
     CDS             complement(2270..3058)
                     /locus_tag="VFI64_06845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243043.1"
                     /translation="MNKFGFVISALLSFMVIYSLFSHAYAHNFYKNQASIFFTLVKQF
                     EIEDNLASDNLHSNKSISLRHSENAANLLKHIASFNNRMTDNANFVKKYNIIFDGLNL
                     TTKALVAANLGDEALKEYGLSQGLDVTQASSLLNMTMNTGTTMKMGENITMPSGPTSQ
                     ALNLAKKHVIDQANFDTSTMIAKSLKILFLRSLKNATIDKSNGLMQIPIEMKTESVKN
                     LEQGIDNLMSALNRKAPLLEVSSIVHGQIHPNLFLVYDLKLKGE"
     gene            3354..>3720
                     /locus_tag="VFI64_06850"
     CDS             3354..>3720
                     /locus_tag="VFI64_06850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243044.1"
                     /translation="MQKSLSLGITAITAAIMIGSMTIEHQVFASIECKSCITQFQILT
                     RSFGADAGKIILTDKSTPISQFIQLNLQFEKNIIKAVYAGHVNTPNDPVIRDLVTKYG
                     DDLLKLNPPDQVKPLLEAYQ"
BASE COUNT         1256 a          640 c          682 g         1142 t
ORIGIN      
        1 ttttgtcaac aaatactttc cagatgaaat agatttgaaa gaatcgattc gcaactctgc
       61 taacgctttc tttcaaactt ctaataaact ggtggaccta agacagagtg cgctagcgtc
      121 ggttcccact ttatcaccat cccacattct agatgcttta actattgcaa aagagactgc
      181 agaaaatgca ttattcaaag cgatagacag cgcaatcgca aatgaaatag gtgaggtgca
      241 agatagaagc aaggctgtgg atgaggcaat taacagttct tctctggtaa cgttatctag
      301 tattatcgtg tctgtaatag ttgcggtagt ttttggtttg tttttttctc ggtatatctc
      361 tattccaatt tcaaatttaa agcaagcgtc tatccagatt ggaaagggag actatgttac
      421 tgcttgcaaa tttctgtcca agacacatag aggtgacgag ataggtaaac tctcttcgga
      481 aattgaaaaa atgaggcaaa gtattgaatc aatgaagact aacttggatg cgcttgtaga
      541 ccaaagaaca aaggaacttg aaatcaagaa tcaggaatta tttgaaagag aaaaagacct
      601 agaaagaatt aacatagaac ttgttaaaac tgaactagcc aaagaagagt tcgtatcaat
      661 ggtcagtcat gaactaaaaa cgcctcttac tccattaaag atgtatgctg aaatccttct
      721 aaaaacaaac aggtttggag ttctaaatga gaaacaactg aaagcagtga aaatgattct
      781 aaataatgta tctaagcttg aattgctgat aaacgatatc ttcgatgttt ataaactcga
      841 cattggaaga ttaaaattga ataagaaatc cattgaagta tcaaggctgg ttcaagagaa
      901 tgtcgccgaa ttagaaccgc tcacagatga taaacaaatt gaattcaaaa ctgaaattat
      961 accaccatct gataaagtca acgtactttg tgaccaaaaa cgtatcgagc aagtcatagc
     1021 caatctggtc aaaaattcta ttgattttgt tcctaagacc ggtggaagaa taacaataag
     1081 agcagagact gatgaaacca ctcagaatgt aacgtttact gttgaagata atggtatagg
     1141 aatacctgtt gataaaatgg ataatctttt caaaacattt tatcaagttg acacctctct
     1201 aacacggaaa cacggaggta ccggacttgg tttggttatc tgtaaaggca ttatcgagaa
     1261 tcatggtggt aatctgtgga tagacagaaa ttatactcat ggcaaatcta tcaagttcac
     1321 tcttccaatt gcgagtaatc tatagctatc ttgatactat cacatcactt atacgattgt
     1381 cacaacttaa cagtaggaat acatggagct tgttgcacta atttaagtac aaatacaata
     1441 gctatttgca caagccatgg atctagaata gttaattttg tagggatacg tcattgcact
     1501 gaacaacatt gtcagctgaa tatcttccta aatattttga gcaatttgaa tagatttatt
     1561 ataaaattaa attgtcaaaa gcctaatagt aaaccagcta aattcacatt tatattttgt
     1621 tattattcag aagatattaa aactgactta acaatagtaa ggaagagtct tatagatttg
     1681 ggtgtattaa tatgtatgaa aatggaacaa ttagaattgg tccacactag tagattcatt
     1741 tcaataatgt tattttgtgc attgtcagca ttgctagtat caactcctgc ttttgcgcaa
     1801 cagacgaatt ttggtgctat cctgtcagga aaaaatctct caccaccggt gaaaactatt
     1861 gcctcaggca cggccaaatt taatgtagat gcccagggga atatgtcata ccagttagat
     1921 gtaaaaaaca ttaaaggcgt cataggagct catattggtc ttcagaacgg aactgatctt
     1981 gcccaagtat tcaatccata catcgagatt gctggcaaat ccgaaattcc tactggagtg
     2041 gtaaatggtc aactatcaaa aggagtcctg acaactagag atctcagtgg tacactagaa
     2101 ggtaaaaacg ttacagatct aaccaaatta ctgaatactg ggtcagtcta cgttactgtt
     2161 cggacgcaag ctaatgagaa cggagagatc cagggtcaag taactccatc aaacacaact
     2221 gggcagtaaa gaataagata gggttattat gagatgcaca tcctagacct tattcgcctt
     2281 taagtttcaa gtcatatacc agaaatagat taggatgtat ttgaccgtgt acgatactgg
     2341 atacctctaa taaaggtgct tttctattta atgctgacat gagattgtct attccctgtt
     2401 caagattttt caccgattcc gttttcatct ctattggaat ttgcatcaag ccattggatt
     2461 tatctattgt agcatttttc aagcttctca agaataatat ttttaacgat ttcgcaatca
     2521 ttgtagaggt atcaaaattt gcctgatcga taacgtgttt cttggctaga ttcagtgctt
     2581 gacttgtagg cccgctaggc atagtgatat tttctcccat tttcatcgta gtccccgtat
     2641 tcatcgtcat attcagaaga ctagacgctt gtgttacatc gagtccttga gagagaccat
     2701 attctttaag tgcttcgtct ccaagattgg ctgcaacaag ggcttttgtt gttaggttaa
     2761 gaccatcgaa aattatatta tattttttaa caaaattagc gttatcagtc atcctattat
     2821 tgaaagaggc aatatgtttc aataagttag ctgcattttc tgagtgcctt aatgaaatag
     2881 acttgttgct gtgaaggtta tccgacgcaa gattatcttc aatttcgaat tgctttacta
     2941 atgtaaaaaa tattgaagct tgatttttat agaagttatg agcatatgcg tgactaaata
     3001 gtgaatagat taccatgaaa cttagcaaag ctgaaattac aaatccaaat ttgttcattc
     3061 gttgatcaaa ataatccatg taataataag gtattttcat tgtgcgttat gacagagatt
     3121 atttgcagat ggaaaaaagt tggctatcaa caagtcctga taatcgtggt catattacct
     3181 atcgctgcac cctccccggc actgattcta tttcattacc tccaaatacg agatccatgc
     3241 tattgttcat ataccacggt caaccatatt ctacaagttt caagaataat ttgacatatc
     3301 atttttccga gatgcttaat tattattcat actcggagat aacgtagtct aaaatgcaaa
     3361 agagtttatc gttgggaatt acagcaataa ctgcagcaat tatgatagga tctatgacga
     3421 tagaacatca ggtttttgcg tctatagaat gcaaaagttg tattacacag tttcaaattc
     3481 ttactcgatc atttggagca gatgctggaa aaatcatttt aactgataaa tcaactccaa
     3541 tttcgcaatt tattcaatta aatcttcaat ttgagaaaaa catcataaaa gcagtatatg
     3601 ccggtcacgt aaacactcca aatgatccag taataagaga tctagtgact aaatatggtg
     3661 atgatttatt gaaattaaat ccgcctgatc aggtaaagcc gttgttggag gcctaccaag
//
LOCUS       DASSIK010000369         4376 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_170188, whole genome shotgun sequence.
ACCESSION   DASSIK010000369 DASSIK010000000
VERSION     DASSIK010000369.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4376)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4376)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4376
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_170188"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            429..1118
                     /locus_tag="VFI64_06855"
     CDS             429..1118
                     /locus_tag="VFI64_06855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243045.1"
                     /translation="MDKEIKLRIINSMTAIVHDESACILPSIIKLILLGELLRIQGRV
                     RLSDLIIVVLVLAIFLQIGEDKALLFSLYAPAHAHFFGATKTVNGYQIVFQPAPSVPL
                     AGDNSTLLNFSVLDKDNQNVNNIFASLIIKEKNSGNVVKVFPFKFYEFSDLTFPFSFK
                     KIGDYVVTLQTRINGDPIYGDNPLSVDFDLSAGNPNQIIPFDELITYYVIPASIVILA
                     IAIYLRRKNKI"
     gene            complement(1424..1663)
                     /locus_tag="VFI64_06860"
     CDS             complement(1424..1663)
                     /locus_tag="VFI64_06860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243046.1"
                     /translation="MTQVQPLALTMGSSERLEDVEKICIKCGRKNSEHPATGRFNTIV
                     LYGPECAWNPDDEFRDFVMNSLKSSGYNLNDFGYD"
     gene            complement(1822..1980)
                     /locus_tag="VFI64_06865"
     CDS             complement(1822..1980)
                     /locus_tag="VFI64_06865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243047.1"
                     /translation="MSYSEQIGIFSYSDSGVNKDDHNGGMIAVSSINKLTHCYDNLSV
                     RRPIRYAT"
     gene            complement(1984..2658)
                     /locus_tag="VFI64_06870"
     CDS             complement(1984..2658)
                     /locus_tag="VFI64_06870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243048.1"
                     /translation="MSSFTIAFLLYYSYIPTYGHLTKKFGNVTILVGWVNEPALLGDL
                     NNVLIEIQKGSGNGISPVLNAFSNLSASVKYGTLTKNLDLLPSETTDGSYEGKLIPTR
                     VGTYSIVLKGDVQGQKINGEIQLDAVEGKQGISFPDSSPADASTNNALVSKVEGTLSQ
                     LSNDLQDAQENIGQLGKNLQNVQNSINSINQSADRTYMISVTAIGVGLAGIIIAGFSL
                     SRKTKI"
     gene            2809..>4376
                     /locus_tag="VFI64_06875"
     CDS             2809..>4376
                     /locus_tag="VFI64_06875"
                     /inference="COORDINATES: protein motif:HMM:NF017262.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein CopC"
                     /protein_id="HET7243049.1"
                     /translation="MSVRVNYFTKQRYRNLLLTVFVLAIASFLICGTMEKSYGHAFLT
                     NSNPGASQSLSSPPGKIEAFFSEPVDIKYSQVKVLDPNGKEVDNKDIHHIDGDQSSLS
                     VTLPRLEDGVYTVSTNVLSQTDGHVTKSAFVFAVGQAAIPSNLSSTNSESSIIYVPEA
                     IARFPTLVGQVIIVGGAFSVLWLWRPFSKIQWLSDILLETRKNIDKRLVSLFLLGSII
                     LVVSDFAIVVFQAFAISATLLDVLTTRFGMVLVARIFLSLTLLGVSLFEFRRFRKFRT
                     VLSKGEMTGIISLGVTLLLTTSLIGHGAANNQFSSIAIDFVHNLTASIWIGGIIYLAF
                     VLIPKLKGEHSLNEYTKIAFLTILIPRFSTSVIVVLGFIVITGPFLLYILENRIDLLI
                     SSLYGKTIIVKLTLATIMLALGAYNQLIIYRDSMKYTSLPITVAEGHKGSKASPDFDP
                     PPGKRQNKPTGKSRDIVSRFSRSTKIESVVGIILLASVAFLVNTGLPQSEFQNQFRQQ
                     ESSSGVTSYVTGVE"
BASE COUNT         1339 a          853 c          784 g         1400 t
ORIGIN      
        1 aacgataatt cactatgtgc ctaaggataa ttcccttttt gaaatctcaa acaacaatgg
       61 aacagagaga gataattgat tgatgaaatt tattatattc gtcaagtaac aatttatgtc
      121 aggtccacta ttactagtga ataaaattaa taatattgat ccagaacatc ttaaccaaat
      181 ttacttactc tcattggtgg atactgacta ctaaagcaac ttttcagtat tttatttgaa
      241 agcatggtca acggaaaaag catatttatt aacttaagtc acatttacac tttcttccga
      301 tagaaattta aaaatgaacc tttagtctac cctattccac tatcattttc caaattccac
      361 tcgtcgccga actgatcatc gtagaataat tcaatgctag acaaaggcga atgagagctg
      421 acatcaatat ggataaggaa ataaaattac gtattattaa tagtatgacg gcaatagtac
      481 atgatgagtc agcatgtatt ttacctagta ttattaagct catattgctg ggcgaattgt
      541 taagaattca aggaagagta agattatcag atcttatcat tgtggttcta gttttggcaa
      601 tatttctgca gattggagag gacaaagcgt tactttttag tctttatgcg ccggctcacg
      661 ctcacttttt tggtgctaca aaaaccgtga atggttatca gatagttttt caaccagccc
      721 cttctgttcc cctagctgga gacaattcta cactacttaa tttcagtgtc cttgataagg
      781 ataatcaaaa tgtaaacaat atctttgctt ccctgataat caaagagaaa aattcgggca
      841 atgtggtcaa ggtctttcca ttcaaatttt atgaatttag tgacctcacc tttcccttta
      901 gtttcaagaa gataggtgac tacgtcgtaa ctcttcaaac taggataaac ggcgacccga
      961 tctatggaga caatcctctt tctgtagatt ttgatttgtc tgctggcaat ccgaatcaga
     1021 taataccatt cgatgaatta ataacatact atgtcattcc agcatccata gtaattttgg
     1081 ccattgcaat ttatttgaga cgaaaaaaca agatctaatt tgataatttc aataaccaat
     1141 tctaacttat atgttatccc ccttcagcaa agaaatatga tgatgagatt ctattcacaa
     1201 atagtctttt tgaaaaaaag attcgatttg tccactacac aatgttttac attaccctga
     1261 aatagaaatg gtttgggtaa atcctagata ataaggaatt tcatcaaggc taatgcgaga
     1321 gttatcttag gaaggaaaca agatgaaaag tcaacagact tctatattct tttcaaaaaa
     1381 attaagactt tctttaagaa cctgaagagt ctctaattac tatttaatca tatccaaaat
     1441 cgtttaaatt atagccagag ctcttcaatg agttcattac aaagtctcta aattcatcgt
     1501 caggattcca agcgcattcc ggaccgtaca aaactatggt gttgaaacgt cccgttgcgg
     1561 gatgttcgga attctttctt ccgcatttga tgcatatttt ttcgacatct tccaatctct
     1621 cgctagatcc catagtcaac gccaatggct gtacctgagt caccgtgcat atactttact
     1681 ggcaaaatat cactcatatt ctcccgactc agtaaaagac cctacgagct taactgaatg
     1741 gcaatgttgg tgtgagatac tttaatttcg gaaattaatt aattaggact gtcattactc
     1801 ctattcaaga gtattgtcta ttcaggtcgc gtatcttatt ggccgcctta cagacaaatt
     1861 gtcataacag tgagtaagtt tgttaatgct gctcactgca atcatccctc cattatgatc
     1921 gtccttgttc acaccagaat ctgaataact gaaaataccg atttgttcag aatagctcaa
     1981 gaactatatt tttgtcttgc gtgataatga aaagccggca attattatac ccgccaatcc
     2041 cactccgatg gcagtcacac tgatcatgta tgttcgatct gcgctctgat tgatagaatt
     2101 aattgagttt tgtacatttt gaagattctt tccaagttgt ccaatattct cttgcgcatc
     2161 ctgtagatca ttggataatt gacttagagt tccctcaact tttgaaacta gagcattgtt
     2221 agtgctagcg tcagcgggtg aactatctgg gaatgaaatt ccttgcttac cttccactgc
     2281 atcgagctga atttctccat tgatcttctg tccctgaaca tcgcccttaa gaactatgga
     2341 atatgtacca actcgtgtag gaattaactt gccttcatat gaaccatcag tcgtttctga
     2401 aggcagaaga tctagattct ttgttaatgt cccatatttt actgaagctg ataaattgga
     2461 gaatgcattc aacactggag agataccatt tcccgacccc ttttggattt caatcaatac
     2521 gttatttaaa tcgcctaaaa gagcaggctc atttacccag ccgacgagaa tagtaacgtt
     2581 tccaaacttt ttggttaaat gaccataggt gggtatgtaa ctgtaataaa gcaaaaatgc
     2641 gattgtgaat gacgacaaca aaaacataac caatatgaaa cgaatagact tcaattttaa
     2701 gtatcatcta tcatattcga cgcttaaatc tttccccaat attcgacgac tgtatcagtt
     2761 atgagggaaa taataaaata cactatgcgt gtgtatacca gatgctactt gtctgttaga
     2821 gttaactatt ttacaaagca gcgatatagg aatctacttc taacagtatt tgtattggca
     2881 attgcttcat ttcttatctg tggtacgatg gagaaatcat atggccatgc gtttcttaca
     2941 aatagtaatc cgggggcttc tcaatcatta tcttctcccc ctggaaagat agaagccttc
     3001 tttagtgaac cagtcgatat caaatatagc caagtaaaag ttcttgatcc caatgggaaa
     3061 gaagtggata acaaagatat ccaccacatt gatggagacc agtcctcact aagtgttaca
     3121 ctaccacggc tagaggacgg agtgtacacc gtgtctacaa atgtactgtc acaaactgat
     3181 ggccatgtta caaaaagtgc ttttgtattt gctgttggcc aggccgcgat tccttcgaac
     3241 ttgtcaagca ctaattcgga atcatctatc atatatgtac ctgaagcaat tgcaagattt
     3301 cctacccttg taggacaggt catcatagtg ggtggcgcat tcagtgtgct ttggctatgg
     3361 aggccctttt caaagataca atggctttca gatatccttc tggaaactag aaagaatatt
     3421 gacaaaaggt tggtttcctt gttcctacta ggatctataa ttttagtcgt atcagatttc
     3481 gctatagtcg tttttcaagc atttgcaatc tctgctactt tgttagatgt tcttactact
     3541 agatttggca tggtgttggt tgcaaggatc tttttatcac ttacactctt gggagtatcc
     3601 ttgtttgaat ttcgtaggtt cagaaaattc aggacggttt tatccaaagg agaaatgaca
     3661 ggaataattt cactgggtgt taccttactt cttacaacta gtctgatcgg tcatggcgct
     3721 gctaataacc agttttcgtc tatagctatt gattttgtgc acaacctgac ggcatcaata
     3781 tggattgggg gcattatcta cttggcgttt gttctcattc ctaaactcaa aggcgaacat
     3841 tctctcaacg aatacacaaa aattgcattt ctcacaatac ttatcccaag attttcaacc
     3901 tctgtgatag ttgtgcttgg ctttatcgta ataaccggtc ctttcctact atacattctt
     3961 gaaaaccgta ttgacctgct aatatcttcg ctctatggta agaccataat agtaaagctt
     4021 actttagcta caataatgtt ggcgctgggg gcatataatc aattaataat ttacagggac
     4081 tctatgaagt atacatcctt gccgataact gtggcagaag gtcataaagg atcaaaggct
     4141 agtccggatt tcgatcctcc tccaggtaag agacaaaaca aacctactgg aaaaagtcgt
     4201 gacatagttt ctagattttc taggagcaca aaaatagaaa gcgttgtcgg gattattctt
     4261 ttagcgtcgg ttgcatttct tgtaaataca ggattgcctc aaagtgaatt tcagaatcaa
     4321 tttcgacaac aagagtcctc cagcggtgtg acatcctatg tgaccggggt cgagag
//
LOCUS       DASSIK010000370         2515 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_488226, whole genome shotgun sequence.
ACCESSION   DASSIK010000370 DASSIK010000000
VERSION     DASSIK010000370.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2515)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2515)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2515
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_488226"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1129
                     /locus_tag="VFI64_06880"
     CDS             <1..1129
                     /locus_tag="VFI64_06880"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HET7243050.1"
                     /translation="WAIEYFADNGKIFASDEVVNTDARKSIITFQPIGVIGSIMPWNF
                     PYWQALRFAAPSLMVGNTIVLKPASSTMQCGIEIEKTFRKVGTSDGIFQTLVGDSSIA
                     ETLIDSDINAVTFTGSVSVGAKVAQRATSQLKKTVLELGGSDPFIVCGDADVEKASTG
                     AVKGRFINCGQSCIASKRFIVVKNIANEFTEQFVIKAKKLKVGDPLLDDTDIGPLVNI
                     NSLKNMESLVAESVKEGAEIVAGGERTNTKGFFYLPTIMKNVSPTMRIATEEVFGPIA
                     PIIVADDEKEAIRLANDSKYGLGASIWTQDLDKAEKLSKVIESGIVTVNNVVISDPRV
                     PFGGIKNSGFGREMSRYGMLEFTNIKSVRLYDQLAPNHHVE"
     gene            1126..2469
                     /locus_tag="VFI64_06885"
     CDS             1126..2469
                     /locus_tag="VFI64_06885"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HET7243051.1"
                     /translation="MIRLAKHGNKTIRAMKDTTSSARVDEGRTDSKKDGAQNATSSSS
                     GNNNAIENVLILQGGGSLGAFGCGVFKALAEKNMKINIVAGTSIGGVNAAIIAGSKNE
                     GRPEQLLEEFWLELTDSFVDLENTHFRSISPQLEQMISNYYFYYTSSLGEKKNESLRK
                     MKEYRDKSIMSFLSSAIFGNSKMFKPRWALEYSLTDPEYFQPSKWTYLYDHSPLAKTL
                     EKYIDYDKLKPGGNPNSRLIMTAVNVLTSEPLTFDSSRQQISPKHILATCAYSSYNFP
                     WVEVEKDVYAWDGSLLSNTPLREVIEASPVNDKRIFLVENYPKKIVHLPENLAEVHHR
                     TRDIIFCDKTLSTVQMSKVITRYLRYIDELYQLVENNIDLTKVDKIQLEKIRRKYKKY
                     KQDTGAEIKGVYYISRDEPVHSIYENADFSPKAIKDSIKEGEQKTIRILDEIAKK"
BASE COUNT          842 a          422 c          568 g          683 t
ORIGIN      
        1 ttgggccatt gaatattttg cagataacgg aaaaatcttt gcatcagatg aagtggtaaa
       61 cactgatgca agaaagagta tcataacatt tcaaccaatc ggggtcattg gaagtataat
      121 gccatggaat tttccttatt ggcaggccct acgatttgcg gccccttcac tgatggttgg
      181 taatactatt gtattgaagc cagcaagttc cacaatgcaa tgtgggatcg aaatcgaaaa
      241 gacgttcaga aaggttggaa cttcagacgg tatttttcaa acactcgtag gagactcgag
      301 tatcgcagaa acccttattg attcggatat taacgctgtc acatttacgg gtagcgtttc
      361 tgtgggtgcg aaagtggcac aaagggctac ttcgcaatta aaaaagacag ttctagaatt
      421 gggagggagt gatccattca tagtatgtgg agatgcagac gtagaaaagg catctaccgg
      481 agcagttaaa ggccgcttca tcaattgcgg tcagagttgt attgcatcaa agagatttat
      541 tgtggtaaaa aacattgcta acgaattcac cgaacaattt gttatcaagg caaagaaact
      601 taaggtcgga gatcctcttt tggatgatac ggatattggt cctcttgtta atatcaatag
      661 tttgaagaat atggaatctc tagttgcaga atcggtaaag gaaggagcag aaattgttgc
      721 aggtggagaa cgtacaaata ctaaaggttt cttctaccta ccaactatta tgaagaatgt
      781 ttctccaacg atgcgtatcg caacggaaga agtatttggt cctattgccc cgataatagt
      841 ggctgatgac gaaaaggaag cgattagact tgctaacgac tcaaaatatg gccttggtgc
      901 aagcatctgg actcaggatc ttgataaagc agaaaagttg tcaaaagtta tagaatctgg
      961 tattgtgact gtaaataatg tagtcatatc ggatcctaga gttccattcg gaggtatcaa
     1021 aaatagtgga tttggcagag agatgtcaag atatggaatg ttggaattta ctaacataaa
     1081 atcagtaagg ttgtatgatc aattggcgcc caatcatcat gtggagtgat acgtctggct
     1141 aaacatggta ataaaactat acgtgcaatg aaagatacga cgtcatcggc cagagtcgat
     1201 gaaggtagga cagattctaa aaaagatggg gcccagaatg ccacatcgtc atcatctggc
     1261 aataacaatg caatcgaaaa tgtattgatt cttcaaggcg gcggatcgtt gggcgctttt
     1321 ggctgcgggg tattcaaggc ccttgcagaa aaaaatatga agatcaatat cgttgcagga
     1381 acgtcaattg gaggggtgaa tgcggcaatc atagctggga gtaagaatga gggacggcca
     1441 gaacaacttt tagaagaatt ctggctagag ctgacagata gcttcgtaga tttagagaac
     1501 actcattttc gttctatatc tccgcagttg gaacagatga tatcgaacta ttatttttat
     1561 tatacttcat cactaggaga aaagaaaaat gagtcactaa gaaagatgaa agaatacaga
     1621 gataaatcta taatgtcttt cttaagttcg gcaatatttg gaaattccaa gatgtttaag
     1681 cctcgatggg cattagaata ttcattaaca gacccagaat attttcaacc ttcaaaatgg
     1741 acctatcttt acgatcattc tcctctagca aaaactttag aaaagtatat tgactatgac
     1801 aaattgaagc ctggtggaaa tcctaactcg cgattgataa tgactgctgt aaatgtgcta
     1861 acatcagaac ctctgacatt cgatagttcc cgacaacaga taagtccaaa acatatactt
     1921 gcaacctgtg catattcgtc atacaatttc ccttgggtgg aagttgaaaa agatgtatac
     1981 gcgtgggatg ggagtttact cagtaatact ccgttaagag aggtcataga ggcgtctccc
     2041 gtaaatgata agcgcatatt tttggtggaa aattatccaa aaaagattgt tcacctgcct
     2101 gagaacttgg ctgaggttca tcacagaact agagacatta tcttttgtga caagactctg
     2161 agtacggtcc aaatgtctaa agtgataact cgatatctcc gttatattga tgaactgtat
     2221 caactggttg aaaataatat tgatttgaca aaggtcgata agatacaact cgaaaagatt
     2281 cgcagaaagt ataaaaaata taaacaggat acgggggcgg aaataaaagg tgtgtattac
     2341 atttctcgcg atgaacctgt tcattctatt tatgagaacg cagacttttc accaaaggct
     2401 atcaaagatt caattaaaga aggagagcaa aagacaatta gaatccttga cgaaattgcg
     2461 aaaaaatagg cagggaattg aaactgatcg cttgttaacg ataggcagag cttgc
//
LOCUS       DASSIK010000371         2426 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_584430, whole genome shotgun sequence.
ACCESSION   DASSIK010000371 DASSIK010000000
VERSION     DASSIK010000371.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2426)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2426)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2426
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_584430"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(484..873)
                     /locus_tag="VFI64_06890"
     CDS             complement(484..873)
                     /locus_tag="VFI64_06890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243052.1"
                     /translation="MKEDQLSDLLGLLSDRKSRELLNIMVEPGFDTITLRKKSKMTRK
                     QIYSRTCKMLKIGLISRSKGKLSVTIFGKAILQNLQFSQKLLEDKWKFKAIDAIDLQD
                     MSIEEHKKLVHSILNDAKIEKILWNVR"
     gene            1492..1956
                     /locus_tag="VFI64_06895"
     CDS             1492..1956
                     /locus_tag="VFI64_06895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243053.1"
                     /translation="MVLLIANSVNLLVFDIIAAQENSTDTIIENKTGTRSVLRSALSQ
                     GYALANQITVTTDKQTYDPGETVNITIKNVGTQPIHFSGVDSDIKITNQESGKSFIPS
                     PLLLTALIPSGSSKIVVWNQQDYVGQLVGSGNYTALVSIGQIAANTTFAISP"
     gene            complement(2214..>2426)
                     /locus_tag="VFI64_06900"
     CDS             complement(2214..>2426)
                     /locus_tag="VFI64_06900"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0030638 - polyketide metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ester cyclase"
                     /protein_id="HET7243054.1"
                     /translation="VDIVKTHHSDDAVILEVRMKGTHLGDWAGLKPTGRLMDIPVACI
                     FEFDSDRLVCEKVYFDMATLMNQLNA"
BASE COUNT          804 a          462 c          381 g          779 t
ORIGIN      
        1 aactgattcc aaatattctt cttcagatgt cataagttag tgtagccaac aaagtataaa
       61 aaagattaat tctggagtgc atcccaaata ttcaaccact ttttaaaatg aataccataa
      121 gatgatttaa gtgacctaca atttttgaac tttcatttaa tcaatgtttg aaataaaaac
      181 ctggtagaca tatcaatgac gaattcactc ccttttcttt tacatggcag gataaaccaa
      241 atactttttt gttcgtatct atgaacccat gcaaggaaca caaatgagaa tagtaagctt
      301 gttcacatga atattaccaa ctcagtattg gaagaggctt ccgactagac gccccggata
      361 ttaaattagt ttgctcaaag gttctatatg taataaatac atttgaagaa agtgtttgca
      421 ccttgggcta taagttcaca caattgaacg ctgaagccct caaagaacaa cttgtcaata
      481 gaactatctt acattccata atattttctc tatttttgca tcattaagga tagaatgcac
      541 cagcttttta tgttcttcaa tgctcatatc ctgtagatca attgcgtcaa tagctttaaa
      601 cttccactta tcttccaaaa gtttttggct aaattgtaag ttttgcaaaa tggctttacc
      661 aaaaatagta actgataact tacctttcga cctactaatt agtcctatct tcaacatctt
      721 acacgttcga gaatatatct gctttctagt catcttgctc tttttcctta gcgtaatagt
      781 atcaaagcca ggctcgacca ttatatttag caattctctt gattttctgt cagacaacag
      841 tcccagaaga tctgaaagtt ggtcttcctt caatatcaac tttgattgga attatctata
      901 tatgaactct ttcgcctttg tctgatatca tgtacgtttt gtgccaaaaa gggtgtttta
      961 ctaaaattct tacataatct tgcttaatca taagaaatta tgttctgagg atattcactc
     1021 agatttacat attcattgaa tttcatgatt ccacagtcac ctcacaaatt tgactttcaa
     1081 acatcgaagc aggaaaaatc atttttggat catatagtga cctaccgcag gctataaaat
     1141 aaagatgaga ctttatgaaa tttcattatt caaatttcgg ccatcaatgc aatttacttt
     1201 atactctaaa actaatttca tagcagattt tgtcaagtag gataggaccg tagaccttaa
     1261 agatagacga atttctatat tgataccaga ttaataaaaa gagaatttct aatatcattt
     1321 cataaaatta caggttaggg gtgactttct caacgtttat gaatggatag tttactgact
     1381 ataaaatcgc agcaagatct ttaagtactt acattgtcta cacaaaactg acatatgtat
     1441 tcccgtaggt gcatagcaac aacgttaaca actgttctag taataggtct gttggtacta
     1501 ctgattgcaa attctgtcaa tcttttggta tttgatatta tagcggcaca agagaactcc
     1561 actgatacta tcattgagaa taagacaggt actagatctg tgttgcggtc agccctgagt
     1621 caaggttatg cgcttgcaaa tcagataact gtgaccacag ataagcagac atatgaccca
     1681 ggagagacag tcaacattac tataaaaaac gtcggcactc aaccaataca tttttctgga
     1741 gttgattctg acataaaaat aacgaaccag gagtctggca agagtttcat accttcgcct
     1801 ttgctgttaa cagccctaat tccgtcaggt tcatccaaaa tagtagtatg gaaccaacaa
     1861 gattatgtcg gccaactagt aggttctggc aactacactg ctttggtatc tataggtcaa
     1921 atagctgcta acacaacatt cgctatttcc ccatagtaaa tacacttaat tagttactta
     1981 gtaacgatgt ttgattattg gtataatcga ttcttcgtta aaagtgaaaa tggagctaaa
     2041 ctagagttac aaagaatacg tgtaatagtg ttcgctatac caacgggtct aaagacaata
     2101 ggatatctct actagaagat cgagatatca aagagtcaat ttttcaaata tcaagttaaa
     2161 ttccaagata cagactcgct tctgtaacaa caaattttgt agactgacat atattaagca
     2221 ttcagctgat tcatcaacgt agccatatca aagtaaacct tttcgcacac taatcggtca
     2281 ctatcaaatt caaagatgca tgcaactggt atatccatca atcgtcctgt aggtttaaga
     2341 ccagcccagt caccaagatg cgttcctttc attcttactt caaggattac tgcatcatca
     2401 gaatggtgtg tcttgacgat atcaac
//
LOCUS       DASSIK010000372         2365 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_271077, whole genome shotgun sequence.
ACCESSION   DASSIK010000372 DASSIK010000000
VERSION     DASSIK010000372.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2365)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2365)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2365
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271077"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..761)
                     /locus_tag="VFI64_06905"
     CDS             complement(<1..761)
                     /locus_tag="VFI64_06905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243055.1"
                     /translation="MLVVAGLNLTNAFAKSSEVKGVESANSNADIKIPSVKLSYGGHT
                     YEMLPFVMVEGDQVRKLNFPQLPDDFQPVVKLPSEGTFNFDFGEKPRETNAFVIDYDA
                     DITAISPVNNLGKNRYSVNDVYGPKTLEVRTIYADGKYVTYTLLIDISRIDSTSGLSS
                     SSPKSIKSVSADVNSNPNSNNIKTNPNNINTDYSNYNGSPATIADRIIKEYGGMIKMD
                     TPISRTQPDTQPQAHPSEQGSNGCIDSEIPVKGVTT"
     gene            1067..2242
                     /locus_tag="VFI64_06910"
     CDS             1067..2242
                     /locus_tag="VFI64_06910"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF013015.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006261 - DNA-templated DNA replication
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HET7243056.1"
                     /translation="MFKNPADNNIVSRLIFHLDLDYFYAQCEEIRSPELRNHPLVVCV
                     YSGRNPDAGVVSTSNYKSREFGVKSGMPIKIAKSRLANEDAEFLPIDMSYYNHLSKLA
                     MESVRKIADAYEYVGIDECYADFSRYLGSDFSRARKIADFIKSEIKVSTNLTCSIGVG
                     PNKLIAKIASNFQKPDAITIINPQEVKEFIARCDIEDIPGIGPKNRIKLESSGVESVS
                     HLAKFDLFRLKELFGYKIATYLQNAACGVDDTPIRPHVNKQIGRIVTLKNDVINIENM
                     FPILSSLSSLVYDTLMTRQLSFKTIIVRVVLHNLRQVTCSRNLKLSSTSLEELQNIAR
                     SLFLEAIHLHSLSFLDVRRLGITLSDLSSYTGQNKILQYFAEGSRNGNQENNKNNKL"
BASE COUNT          740 a          441 c          439 g          745 t
ORIGIN      
        1 gttgttacac ctttgacggg aatttccgaa tctatgcaac cgttgctacc ttgttcactc
       61 ggatgagctt gcggttgagt atccggttga gtgcgactaa taggtgtatc catcttgatc
      121 attccaccat attccttgat aattctgtct gctattgtgg cgggtgatcc gttatagtta
      181 ctataatccg tattaatatt atttggatta gttttaatat tattactatt tggattgctg
      241 tttacatctg cagaaacgct tttaatcgac ttaggtgatg aactagaaag ccctgaagta
      301 gagtcaatcc tacttatgtc aatgagtagt gtataggtga catattttcc atcggcatat
      361 atagttcgta cttccagagt tttgggaccg tagacatcat tgacactata tctattcttt
      421 cccaggttat taacaggact tattgctgtg atatcagcat catagtcaat cacaaatgca
      481 ttagtttccc tcggtttttc accaaaatca aaattaaatg taccctctga ggggagcttt
      541 actaccggtt gaaagtcatc tggaagctgg ggaaaattca acttcctgac ttgatcccct
      601 tccaccataa caaatggaag catctcgtaa gtatgaccac cataagataa ttttactgac
      661 gggattttaa tatctgcatt actattagcg ctttcaacac ccttgacttc actggatttg
      721 gcaaacgcat tagttagatt caaaccggcg actaccaaca aaattaagct tgctcccaag
      781 atacaattga aaatccattt attgtcatac tttgtgcgtg ttattttact cttcaagcaa
      841 gcttccaaga aatacactgt ttataggtat ttacgtaatg ccgaacaaat tactaaaatg
      901 aattctacgt acatgaattc attaaatata aaaaatttca gatatattga gtgatgcaaa
      961 tataagccac cataattttt aattcggaca gcgagaatag attgttgcct gatgcacgag
     1021 acactcttga cattattagg taaatataaa aaatgggaac agccttttgt ttaagaatcc
     1081 cgcagacaat aatattgttt cgcgcttaat ttttcacctc gatcttgact acttctatgc
     1141 gcaatgtgaa gagataagaa gtcctgaact ccgaaatcat ccattagtgg tatgtgtcta
     1201 ctctggaaga aaccctgacg ctggagtagt aagtacttcc aattacaaat ctcgtgaatt
     1261 cggtgtcaag tccggtatgc ccataaaaat agctaaatct aggctggcca atgaagacgc
     1321 tgagttcctt cctattgaca tgtcttatta taatcacctt tcgaaattag ctatggagtc
     1381 cgttagaaaa atagccgatg catacgaata tgttggaatt gatgaatgtt atgctgattt
     1441 cagtaggtat ttaggatctg acttttcaag ggctagaaaa attgctgatt tcatcaaaag
     1501 tgagataaaa gtttcaacca atctgacttg ttcaattggt gttgggccca ataaactcat
     1561 tgccaagatt gcttctaatt ttcaaaaacc tgacgccata acgatcataa atcctcaaga
     1621 agtcaaagag tttatcgcga ggtgtgatat tgaagatatc ccgggcattg gtcccaagaa
     1681 caggatcaaa ctggaaagtt cgggcgtcga gtctgtgagc cacttagcca agtttgatct
     1741 attccgatta aaggaattat ttggttacaa gattgcaact tatcttcaaa atgcagcgtg
     1801 cggagttgat gatacaccaa taagaccaca cgtaaataaa cagatcggca gaattgtgac
     1861 acttaaaaat gatgtcatca atatcgaaaa tatgttcccg atcttgagtt cactttcttc
     1921 attagtttat gacactctca tgacgaggca gttatcattt aagacgatca ttgtcagggt
     1981 agtcttacat aatctcagac aagttacttg ttcacgaaat ctaaagttat cctctacttc
     2041 cctggaggaa ttacaaaata tagcaagatc acttttctta gaggcgatac atcttcattc
     2101 tctatctttt cttgatgtta gaaggttagg aattacacta tcggacctat caagctatac
     2161 aggacagaat aaaatattac aatactttgc ggaagggtcg aggaatggaa atcaagaaaa
     2221 taacaagaat aataaattgt agtgagattt catatcaaaa aattcattta taccgttgga
     2281 gtaattgatt gcaggaatat cacccagagt tcgagttgaa attttcctca gccttactag
     2341 agtacgagta tgatcgttgg ctact
//
LOCUS       DASSIK010000373         2590 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_271090, whole genome shotgun sequence.
ACCESSION   DASSIK010000373 DASSIK010000000
VERSION     DASSIK010000373.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2590)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2590)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2590
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271090"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            92..991
                     /locus_tag="VFI64_06915"
     CDS             92..991
                     /locus_tag="VFI64_06915"
                     /inference="COORDINATES: protein motif:HMM:TIGR03026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003979 - UDP-glucose 6-dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HET7243057.1"
                     /translation="MGTSKISIIGSGIVGTATGRGFHKLGHDVIFYDIASEKIRPLKN
                     LGYNVASTLEEAMSQTGISFICVNTPTNNGQQDLSQIMSVLYQLSNFLNNSDGFHLLV
                     FRSTMLPGTMSNFVVNYLERHCTKKRGIHYEVCYNPEFLRQNSALDDFFSPDRVILGE
                     DRKGISESLISMYKELTDKIIVTSFEAAELIKYASNCFLSLKISFFNEIGMICRSVGV
                     DDKIVSLGVSLDKRIGKYGTEAGRPFDGMCLPKDTQALASFMKQHDIEPDLLQVVLDI
                     NKKIEDITATRQIVSGIRESVQV"
     gene            1146..2300
                     /locus_tag="VFI64_06920"
     CDS             1146..2300
                     /locus_tag="VFI64_06920"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase family glycosylhydrolase"
                     /protein_id="HET7243058.1"
                     /translation="MTVLFSISHFQAQAAPYKPHLIGVDMLGYYTSMPQTREFKDPLP
                     ENYFDDSFKLISQAGLNHIRFVYYWESYVKDPLAFINELKFVASTADKYGLKVIYDNH
                     QFHTSSWLNPQRGTGFPSFFFQNNTQYAFGSGGGPKYPTASIWWGNWWNRQITDLNGT
                     DGWTLLDQFLKKVVDTVDSHASTVGYEILSEPQVHSSDQWEKIGAFNSFITDQLRTVT
                     AKDIVFSMTIPVDLKSPIGVNATNLAKMTPSDKTNVVFKFSLYGLPKPGSYQEQRLKM
                     FVNTGQIAGVPIYVGEWNNVDRDLTVNEEGDVVFEINPQTSNITPADTSLILNKFNEV
                     KVYGWAFWYWNFRSHRVDNFNLVIAEPNGSLKPTQYYDILKNAINATYGR"
BASE COUNT          821 a          474 c          532 g          763 t
ORIGIN      
        1 aagcatatca aggtagaaga gacaggattg tatatatatg attccttaca aacggataca
       61 attataatga cattaaaagg gataggaggg tgtgggaacg agtaaaatca gcataattgg
      121 ctccggcatt gttggaactg caacaggtcg agggtttcat aagttaggac atgacgtaat
      181 cttttatgat attgcaagtg aaaagatcag acctctcaaa aacctaggat acaatgtcgc
      241 atctactcta gaagaagcta tgtctcaaac tggaatctcg tttatttgtg taaatactcc
      301 cactaataat ggacagcaag atctgtcgca aatcatgtct gtgctttatc aactttcaaa
      361 tttcctcaac aatagcgatg gatttcatct tctggtattc agaagtacaa tgttgccagg
      421 aactatgagc aattttgtag taaattattt agaaagacat tgtactaaga agagagggat
      481 tcactatgaa gtatgctata atccagagtt tttgagacaa aattcggcat tggatgattt
      541 tttctctcca gacagagtca tattgggcga ggatcgcaaa ggaatatcag aatcactaat
      601 atcaatgtat aaggaattaa ccgacaagat tattgttaca tctttcgagg cggctgagct
      661 gataaaatat gcctcaaatt gcttcctctc actaaagatt tcatttttca atgaaattgg
      721 catgatttgc agaagtgtgg gggtcgacga caagatagtc agtttgggag tttctctaga
      781 taagaggata ggaaagtacg gaactgaagc tgggagaccg tttgatggaa tgtgcttacc
      841 aaaggatact caagctctgg cttcgtttat gaaacaacac gatatagaac ctgatttact
      901 ccaggtagtg ctcgacatta acaagaagat tgaagatatt actgccacaa gacaaattgt
      961 atcaggaatt agggagtcgg tacaagttta attgtcgaca catatcattt aattataaca
     1021 ttttgtttgt ataatattcc actagctggg ccaatcgaca tttagtaaat ttatatttgg
     1081 tagaagaccg tttcgccttg atggttttgt cgcgtattac attttctcta tcaatcttct
     1141 tgattatgac agttttattc tctataagtc attttcaggc acaggctgct ccctataaac
     1201 cacatttgat aggtgtggac atgcttggat attatacgag tatgccgcag accagggaat
     1261 tcaaagatcc gttgccagag aattattttg atgatagttt caaattaatt agccaagcag
     1321 gactgaacca catacggttt gtgtactact gggaatcgta tgtgaaagat ccgcttgcat
     1381 tcattaacga actaaagttc gtggcgtcta cggcagataa atacggtctc aaagttattt
     1441 atgataacca tcaatttcac acatcatcgt ggcttaaccc tcaaagagga actggttttc
     1501 catctttctt ttttcagaat aatactcagt atgcatttgg tagtggagga ggtcccaaat
     1561 accctacggc ctctatatgg tgggggaact ggtggaatag acagataaca gatttgaatg
     1621 gtaccgacgg atggacgctg ttagatcaat ttctaaagaa agttgtagat accgtagact
     1681 ctcacgccag cactgtaggc tatgagatct taagtgaacc tcaagtacat agctctgacc
     1741 aatgggaaaa aataggtgca ttcaattcat tcataacaga tcagctcagg accgtaactg
     1801 caaaggacat tgtcttcagc atgactattc cagttgatct aaagagcccc attggggtaa
     1861 atgctacaaa ccttgcaaaa atgaccccaa gtgacaagac aaacgttgtt ttcaagttca
     1921 gcttgtatgg cttacccaaa cctggaagct atcaagaaca acgacttaag atgtttgtaa
     1981 acactggaca aatagcaggc gtacctatct atgttggaga atggaataat gttgacagag
     2041 accttactgt taatgaagag ggagatgtgg tttttgagat aaatcctcaa actagtaata
     2101 ttacaccagc ggacacgtct cttattctca acaagtttaa cgaagttaag gtatatggat
     2161 gggcattttg gtattggaat ttccgttcgc atagagtcga taatttcaac ctcgtgatcg
     2221 cagaaccaaa cggttctttg aaaccaactc agtattatga tatactcaag aatgccataa
     2281 atgctaccta tggacgataa gttaggccta gtgccaaatt tctctcaatc gaatatcata
     2341 actgagccag caagtcatta ctttttctca ttattgaatt tcaatatatt ccagaagatt
     2401 tatttccgaa tgataatgat ctagaagctg acgaagggca caggcgttga ctacacaact
     2461 atcactaaaa aagaaaagca agttatggcc cattgtcttt gttgctattc cccttttgct
     2521 ttccgcctac actcatttat ggaatccagc cgggtttccc tcgcagcacg tagatgaagg
     2581 gcattacctt
//
LOCUS       DASSIK010000374         2140 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_673455, whole genome shotgun sequence.
ACCESSION   DASSIK010000374 DASSIK010000000
VERSION     DASSIK010000374.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2140)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2140)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2140
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_673455"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(336..620)
                     /locus_tag="VFI64_06925"
     CDS             complement(336..620)
                     /locus_tag="VFI64_06925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243059.1"
                     /translation="MSKVDPHSQDNHTGDSHDEGETETVKLMKLNEVFAFEIQKAGIN
                     AEAVPIGSLQLEKEEYYNNDLGRSPRIVTNKGCIKLKSSTIDLVQLIQRN"
     gene            745..>2140
                     /locus_tag="VFI64_06930"
     CDS             745..>2140
                     /locus_tag="VFI64_06930"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HET7243060.1"
                     /translation="MEGTPSRNSLGFGGKVVVVTGSGTGIGQSIAKRFAENGASVIIL
                     GRRVEPLEKTASDLRQIISKVGSKGTVRIFPGVDVSDENAINEMFQSIKEEAGNVDIL
                     VNNAGVSGPVKTFTNSDFNEFKECVAIHLTGTFWTTMKCLQTMKNGSKIITISTFFTE
                     ENRYEQRPYRFRTPYTSAQGAKNRLAEALAWELVQDGIRSVATNPGPVHSERIYKTVY
                     PKAAVEFLRIGGYPGLTSSEIDRISPMLLSLLGENAETIKEGLMKISKTMRESTTQKD
                     KKVEETSLTLKGLLEKIQEIAEKVQTNTKKMIVDEEFLSQDEVADMVLNLSQDSISKL
                     INGRVIPNDRVFYPVKPIVSTSPHIQDEPKLSDRVVVMIINSTADKDHQRAKIMASCL
                     DGKVKQLVVLTREKKDLAHYKEYHSHSLDLSQGDAVSKIFQTAKTRFASVHGVIMLTG
                     EFDYSTPLLSMNRRR"
BASE COUNT          686 a          395 c          437 g          622 t
ORIGIN      
        1 tattttcaat ttgagccacc gtgttttcaa atttgtattt cacggcctct tggattgcaa
       61 acttgaagat ttcttcgaat ttttcgaggt gtttgtctac aaattgttca ttaccttcca
      121 attctacgct cccttctttg acatttatct tgaactttgc ttcgggggca ctcaatgttg
      181 agtctgtgag atatgtattt tattaaggtg tcggtacaat accgtaacgc aatattgact
      241 atccaaaagc tatcgttatc aactaactaa ggccactcaa atagaatccg acgctatttc
      301 ttagtacatc atctctcatc gagaatcaaa ataatttaat ttctttgtat gagttggact
      361 agatctattg tggagctctt caatttgatg catcccttat tggtaacaat acgaggtgat
      421 cttcctagat cattattata gtattcctct ttttcaagct gtagtgaacc aatcggaact
      481 gcctctgcgt taattccggc tttttgaatc tcaaatgcaa atacttcatt taatttcatc
      541 agttttacag tttcagtctc gccttcatca tgagaatcac ctgtatgatt atcttgtgaa
      601 tgaggatcca ctttggacat accgatgata tttatacttc tattaattaa atgatgtgaa
      661 gtaattgcta aaatcaaagc ccaatctcca cttcctaccg cataattaag ttatatttaa
      721 tagggcagga attgtgcgaa aattatggaa ggaactccgt caagaaattc cttaggattt
      781 ggtggaaaag ttgtagtagt tactggtagt ggaacaggca ttggacaatc aattgcgaag
      841 aggtttgccg aaaacggggc tagtgttata attctaggga gaagagttga gcctcttgaa
      901 aaaacagctt cagacctcag acaaataatc tccaaagtcg gctcaaaagg tactgtcaga
      961 atttttcccg gtgtagatgt atctgacgag aatgcgataa acgaaatgtt tcaatcgata
     1021 aaggaagagg caggtaatgt cgacattttg gtcaataatg cgggagtttc tgggccggta
     1081 aaaactttta ctaactcaga ttttaatgaa ttcaaagagt gcgttgcaat tcatcttacg
     1141 ggaacttttt ggactaccat gaagtgtctc caaaccatga aaaatggatc caaaataatt
     1201 acaatctcta cattctttac ggaggagaat cgatatgaac aaagaccata caggtttaga
     1261 actccataca caagtgcgca gggggccaaa aatagactcg cagaagcgct tgcttgggaa
     1321 ttagtgcagg acggaataag atctgtcgcc acaaatcccg gaccagtgca ttccgaaagg
     1381 atctataaaa cggtctatcc aaaggccgcg gtggaatttt taagaatagg cggctatcca
     1441 ggccttacct cgtccgagat agacagaatc tcgccgatgt tgttatcact attgggtgaa
     1501 aatgcagaaa caatcaagga aggattgatg aaaatatcaa agacgatgag ggaaagcact
     1561 actcaaaagg ataagaaagt cgaggaaaca tctctcacac ttaaaggact cttagaaaaa
     1621 attcaagaaa ttgctgaaaa agtccagacg aataccaaga aaatgattgt cgatgaagaa
     1681 tttctttctc aagatgaagt tgcagatatg gttctaaatc tttctcagga ttcaattagc
     1741 aaattgatta atggtagagt catcccaaat gatcgcgtgt tttaccctgt caagccaatc
     1801 gtaagtacct ctccccatat tcaagatgaa ccaaaattat ccgacagggt cgttgtgatg
     1861 atcatcaatt caacagctga taaagatcat caaagagcaa agattatggc tagttgccta
     1921 gatgggaagg taaaacaatt ggtagtgtta actcgtgaaa agaaggatct cgcgcattac
     1981 aaagagtatc atagccattc cttggatttg tcacaggggg atgcagtgag caagatattt
     2041 caaactgcga aaacgaggtt tgcctcagtg cacggggtaa taatgctaac aggtgaattt
     2101 gactatagca ctccgctatt atcaatgaac agaagacgat
//
LOCUS       DASSIK010000375         2058 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_368779, whole genome shotgun sequence.
ACCESSION   DASSIK010000375 DASSIK010000000
VERSION     DASSIK010000375.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2058)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2058)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_368779"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..814)
                     /locus_tag="VFI64_06935"
     CDS             complement(<1..814)
                     /locus_tag="VFI64_06935"
                     /inference="COORDINATES: protein motif:HMM:NF024376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhnD/SsuA/transferrin family substrate-binding
                     protein"
                     /protein_id="HET7243061.1"
                     /translation="MLLSKMMIAVTAILLTVFILVPLKNGLAQSESNVTLGIINLEGD
                     EVIGKTDIADKQRFSQDLINYVASNLGNGTNPNLMTVDNISAMVNLLKEQKVDLFIDS
                     PFISALVDNKSGATPFLAIWGEKKPAYSSLIITKKSSPIIYHLYDLNGGKSIGFTSGE
                     SSVGYLLPKSFLIGNGVKFSPPSSPADMIYIFTGSENDTLYKVLKGTLDAGVLSSSFF
                     NALPSSTSSQLKTVGKTMEIPLGIISHRSDFSSQLTDQLSNILMNMKTDAKAS"
     gene            1062..1484
                     /locus_tag="VFI64_06940"
     CDS             1062..1484
                     /locus_tag="VFI64_06940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243062.1"
                     /translation="MYKKYTAVISLCFIVSAIVAATILQLNYAYAQKAETLDFLETVR
                     NIAHDDVFVQLKITGGTTQNFTIDGNPSFTDAPTIQIVKFTLPRQSATPGIPPLKIGD
                     EYFACLSLKSTEASCLRGTIDSLTIAQAKALDVKVIPQ"
     gene            complement(1666..>2058)
                     /locus_tag="VFI64_06945"
     CDS             complement(1666..>2058)
                     /locus_tag="VFI64_06945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243063.1"
                     /translation="TQTLQTTQAQILQTQTSNPLLEEEEFDITVTNIKNSDIKVSITI
                     DGLKNSTIIPGNPPNITLPTTKVVVFKFDRHENAGTPGVLPIKLGDEYTPCIAFANNE
                     DKASCLRASIDSITQPQKKALDANYIPF"
BASE COUNT          641 a          375 c          351 g          691 t
ORIGIN      
        1 ctgatgcttt ggcatccgtc ttcatgttca tcaaaatatt acttagttga tcagtcaatt
       61 gagaactaaa atcggatcta tgagaaatta ttccaagagg gatctccata gtctttccaa
      121 cggttttcaa ttgtgagcta gttgaagatg gtaatgcatt aaaaaaagat gaagacaaga
      181 caccggcgtc taatgttccc ttcaaaactt tgtataaagt atcgttttca cttccagtaa
      241 aaatgtatat catgtcggcc ggagagctag gaggagaaaa ctttacacca tttccaatca
      301 aaaatgattt tggtaggaga tagccgacac tagattcgcc agatgtaaat cctatactct
      361 ttcctccatt taggtcgtat agatggtata taatcggaga agattttttt gtgataatca
      421 aggagctgta cgccggtttc ttttctcccc aaatcgctaa gaacggcgtt gctccacttt
      481 tgttatcgac taatgccgag ataaaaggag aatcaatgaa aagatcaacc ttttgttcct
      541 tcaataaatt aaccatggca ctaatattgt caacagtcat aaggttaggg ttggttccat
      601 tgcccagatt tgaggcaacg taattaatta aatcctgact aaaacgttgt ttatcagcaa
      661 tatcagtttt tcctattact tcatcaccct ccaaattaat tatacctaat gtaacgtttg
      721 attcagattg cgctaaccca tttttaagag gaactaatat gaaaacagtc aacaatatag
      781 cagttacggc aatcatcatt ttactcaata acatttttta aactgattgt aaaaatcgga
      841 ttattatcct ttatctatag acaacatgga cttctatatt tgatccggtg atctatatat
      901 ttattaattc cgagtctttg taatagtatc actctaattc acatttgtta ttattacaaa
      961 catataatga gatctgtatt agggtaacac taaagtaaca gtagtttatt ctgataattt
     1021 caacctagct tttaaataat tagtttcttt agtgtgaatc gatgtataaa aaatacacag
     1081 ccgtgatcag cctatgcttt attgtctcgg caatagttgc agcgacaatt ttgcaattga
     1141 actacgctta tgcacaaaag gccgaaaccc tagatttttt agaaacagtc agaaatatcg
     1201 cgcacgatga cgtctttgta caattgaaaa taactggcgg tacgacgcaa aattttacca
     1261 ttgacggaaa tccaagcttc actgatgctc caacaattca aatcgtcaaa ttcacacttc
     1321 cgagacaaag tgctactcca ggaatacctc cattaaaaat aggtgatgaa tatttcgcct
     1381 gtctgtctct aaagagtaca gaagctagct gtctgcgggg gacaatagat tcgcttacca
     1441 tagcacaagc caaggcctta gatgtaaaag tcatacctca ataaaataca tcttccctaa
     1501 tttttaaaat attgaaatta atgttttttg ttcttaggtt cttttgtagg ggaaatcaaa
     1561 actcacatat tcaaaagttg cccaatcatt agatgtctat taatacacat taaatctctt
     1621 ttgctactaa ctagatcaaa aaagagaggg atttttctta gctctttaaa agggtatgta
     1681 attcgcatca agtgctttct tttgtggctg tgtaatcgaa tctatacttg ctcttaaaca
     1741 acttgccttg tcttcattat ttgcaaatgc tatgcatggc gtatattcat cacctaattt
     1801 tatgggcaat actccaggag tgcctgcatt ctcgtgtcta tcaaacttga atactactac
     1861 tttagtagtt ggaagtgtta tatttggtgg gttgccagga attatcgttg agttcttcaa
     1921 tccatcgatt gttattgaaa cctttatgtc actattcttg atattggtca cagtaatatc
     1981 gaattcttct tcctcaagta aaggatttga tgtttgcgtt tgtaatattt gggcttgtgt
     2041 ggtctgcaaa gtctgtgt
//
LOCUS       DASSIK010000376         2781 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_674197, whole genome shotgun sequence.
ACCESSION   DASSIK010000376 DASSIK010000000
VERSION     DASSIK010000376.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2781)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2781)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2781
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_674197"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..367
                     /locus_tag="VFI64_06950"
     CDS             <1..367
                     /locus_tag="VFI64_06950"
                     /inference="COORDINATES: protein motif:HMM:NF013462.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ribosomal protein L13e"
                     /protein_id="HET7243064.1"
                     /translation="NVEDPIVKIFHHGMRRTRTGRGFSKAELVQVGILNVYTAASKGI
                     HLDKWRKTLHPENVERLTKFLSYQKANSNTVSTVTKTRSSKSTATKEENKKKITNKRK
                     PEKSKKSRGIAKIIRRKNS"
     gene            644..1183
                     /locus_tag="VFI64_06955"
     CDS             644..1183
                     /locus_tag="VFI64_06955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243065.1"
                     /translation="MKNRPVFNSRIVNTYTVLILSFLLLIQTSLDYPETFADSVIIHG
                     GGSGSIECTDGSQAPSDIAFIVLVVNGSASGNWTLDNFNDPVNPGTVLSKGTIYSGNA
                     SISQYAMIGDTHNIKEEIKLCNPPLFTPISLTGVCGQNVVITVQLRSNNPLGIEDTFN
                     GDVICNSIAQESMQSATTG"
     gene            1568..2434
                     /locus_tag="VFI64_06960"
     CDS             1568..2434
                     /locus_tag="VFI64_06960"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: protein motif:HMM:NF025053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004722 - protein serine/threonine
                     phosphatase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PP2C family serine/threonine-protein
                     phosphatase"
                     /protein_id="HET7243066.1"
                     /translation="MSKSSFYCFGKSVRGREHRLSGLPNQDAFRIYIGKYNNPVIIAL
                     ADGHGSPVHFRSEVGSKMAVDTAVDILSSVRETDIRVPNKISKYPALITREWNSRVLL
                     DHKNKKFSSDELVALYDEVKNESIVDYVRLDPKIGYGTTLIVVASYGDFMLYLQIGDG
                     DILVVDDTGNVRKPLRDDVQFSRYQTKSLCTHGASDDFRIAVEKNNGANPVLVLASTD
                     GYSNSFKSYQEFFKVGIAYLDLIRILGCDFLEDILEDLLCKTSSQGSGDDITVGLACS
                     SDLASDHGFIFP"
BASE COUNT          900 a          461 c          541 g          879 t
ORIGIN      
        1 caatgtagaa gatccgattg tgaaaatttt ccatcatggg atgcgtcgta ccaggacagg
       61 acggggtttc tcaaaagccg agcttgttca ggttggtatt ttgaacgttt acactgcggc
      121 tagcaaagga attcatttag ataagtggag gaaaacattg catccggaga atgttgagag
      181 attaactaag ttcttaagtt accagaaggc taacagcaat acagtatcta ctgtaacaaa
      241 aactagatcg tcaaaatcaa cagcaacaaa ggaagaaaac aagaaaaaaa ttaccaataa
      301 aaggaagcct gaaaaatcca aaaagagcag aggcattgcc aaaataataa gaaggaaaaa
      361 ttcatagcct gagaccatca gctggttaac ctagaataat ttaccatgat tttagtcttc
      421 tttttgagat ttttatgatt tcccttttct gatgatagat accactgagt acatccctca
      481 gtctatcttt gaattggaac atatccgaat aaattattga attagggtaa aaagttatca
      541 caatgtcaca atggacggat ttgaaaagta gctatgataa tatgagaatg atgctacttt
      601 tcaaaggaat cttttataag ttgcaaatta actccacaag tagttgaaaa acagaccggt
      661 atttaatagt cgaatagtaa acacatatac agttctaatt ttatcttttc tgttactcat
      721 tcagacttcg ttagattatc ccgaaacatt tgccgattcg gtcatcattc atgggggagg
      781 ctcaggaagt attgaatgca ctgatggttc gcaagcccca tccgacattg cgttcatagt
      841 gcttgttgta aatggatcgg catcaggaaa ttggacgttg gataatttta acgatcctgt
      901 taacccaggg acggttttaa gtaaaggtac gatctatagc ggcaatgcct caatcagtca
      961 gtacgctatg attggtgata cgcacaacat taaggaagaa atcaagttat gtaatcctcc
     1021 tctgtttact cccatctcac tcaccggcgt atgcggacaa aatgttgtaa ttactgtgca
     1081 attacggtct aataatcctc ttggtattga agatactttt aatggcgatg tgatttgcaa
     1141 ttctattgcc caagaatcga tgcagagcgc tacaactgga tagctgagtg ttaccatggc
     1201 tgaataagta catttaaaaa acgaaagaca tgggatgacc aaatagagaa atgtaaagga
     1261 ttttattatt cctctggctt agaaatagta aatagccctt tagtgcattt aatattcaaa
     1321 ctaattcttg ttaccaattt agttagtaat caaattgtgc acatatttcc tttgatttta
     1381 atttgttatt agatttacgt ttattgcaag tctataaaaa ttccaaccga ttttagattg
     1441 tatcttctgc gaaattaatt gatttcaaaa atattattgt tcatttatta tctgaagaat
     1501 taaaaaatgt tagcaatggt tttgtaataa agcacaaata atgcattcca tcattattca
     1561 gttaaaattg agtaaatctt ctttttattg ttttggcaag agtgttcgtg ggcgtgagca
     1621 caggttatcc ggtctgccga atcaggatgc ttttagaatt tacatcggca aatacaataa
     1681 ccctgtcata attgccttgg cagatggtca cgggtctcca gtccattttc gtagtgaagt
     1741 gggttctaaa atggccgttg atactgccgt tgacatactt tcatcagtca gggagacaga
     1801 cataagagtt cctaataaga taagcaaata tcctgcatta attactagag aatggaatag
     1861 cagagttcta cttgatcaca agaataagaa attctcatca gatgaattag tcgctttgta
     1921 tgatgaagta aagaatgagt cgattgtgga ctacgtcaga ttagacccta aaatcggtta
     1981 cggaaccact ctaattgtgg ttgcatccta tggagatttt atgttgtatc tccagattgg
     2041 agatggagat attttggtgg tagatgacac ggggaatgtc aggaagccgc tacgtgatga
     2101 tgtgcaattt tcacgttatc agactaaatc tctatgtacg cacggagcat ccgatgattt
     2161 caggattgct gttgaaaaaa ataacggagc aaatcctgtg cttgtgcttg catcgacaga
     2221 tggatattca aactcgttta agagttatca agagttcttt aaggttggaa ttgcttatct
     2281 agacttgata aggatccttg gctgcgattt tctagaggat attctggaag atttactttg
     2341 taaaacttct tcgcagggta gcggtgacga tataacagtt gggttagctt gcagttctga
     2401 tttagcaagt gatcatggtt tcatttttcc ttaattagct agcaaattat acgaaattac
     2461 aatattcaaa ataactgcac gatacaatca agctgccgga ctttatatat ctaatactgc
     2521 aaattggtaa cgagatcaat gagaacctca ctctgaaatt ttatttgtct tgagtgtgac
     2581 taatgttcta tttaacttct gggtattcaa aatgcattgt tattcccaaa taatcttact
     2641 gagatttaat atgaatcatc tctgatagtt tcctttgtaa tttatcacat gattctccat
     2701 ctcctacgaa taaaagctat aagactaaac acttacagtg gtagagtaga tgtagatcaa
     2761 aacttcccct tatgtaaaat a
//
LOCUS       DASSIK010000377         2284 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1263437, whole genome shotgun sequence.
ACCESSION   DASSIK010000377 DASSIK010000000
VERSION     DASSIK010000377.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2284)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2284)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2284
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1263437"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..353)
                     /locus_tag="VFI64_06965"
     CDS             complement(<1..353)
                     /locus_tag="VFI64_06965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243067.1"
                     /translation="MNMRKGLNDAVLCLMIITATLLIINHRQSPTYVMALAQDVENNT
                     IAVNNSMNSMLGELIYESSGKIVSQKVVDTGDIYYPSAKVELSYSGSGYMQGIGNVTE
                     TWTFVNTHLKNNITQG"
     gene            complement(494..811)
                     /locus_tag="VFI64_06970"
     CDS             complement(494..811)
                     /locus_tag="VFI64_06970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243068.1"
                     /translation="MIEDSFHSGKYPVEDQQKNFTDFVEVINRSNTEDLKSNDIKIEV
                     RIQNLYTINNYVPNIQHLPGVIEMDVLDSFRMLCRRSTRVGSDKSGDDIALSKETLHN
                     SKA"
     gene            complement(1150..1887)
                     /locus_tag="VFI64_06975"
     CDS             complement(1150..1887)
                     /locus_tag="VFI64_06975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243069.1"
                     /translation="MSFGFNHDDEQIEEAEGTYYAKCLGGSLELGQPQSLLIFIYPDR
                     IFLDRFRITIHYSSMTEVQMIDPRNEGDSEKVSWGVVALPLVAWSLIKKLKCGATVIK
                     YLESGQSKSLILDFGKNFRYAHRLIYDRMIKFRPLIKSDKPAMCISVKLRTLQVSMGD
                     VQNFLLYVRDKKSNEVLQNVKITGEVFYPTGGLARFEEDVTDKEGFLSYSWEISQNIR
                     KGIYTAKFSGEAAGFKNGSTSISFEVI"
BASE COUNT          677 a          437 c          377 g          793 t
ORIGIN      
        1 ccttgggtaa tattgttttt tagatgtgta tttacaaatg tccatgtttc ggtcacattt
       61 ccaatacctt gcatgtatcc actaccagag tatgagagtt ctacctttgc tgacggataa
      121 taaatatctc cggtatctac aactttttga cttacgatct tacccgagga ttcgtaaatc
      181 aattcaccca gcatagaatt catactatta ttaacggcaa tggtattatt ttcgacatct
      241 tgggctagtg ccattacata agttggtgat tgtctatgat ttataattag taacgtcgca
      301 gtaataatca tcaaacataa tacagcgtcg tttaaaccct tcctcatatt catttttttc
      361 ctgcagtact ttttatttat tcgcttttta aagtagaaaa atggaaaaaa cattctattc
      421 tatgtctctc caaagatgat ctaacgttca gacttatgat atctgattac cacatgattc
      481 tttaactatt cttttaggct ttgctattat gcaaggtctc ttttgacaac gctatatcat
      541 cgccagattt atctgaccca accctggttg agcgtctaca taacattcta aaagaatcta
      601 aaacatccat ttctattacc cctggcaaat gttgtatgtt gggtacatag ttatttatgg
      661 tatatagatt ctgtatcctg acttctattt tgatgtcatt gcttttcaga tcttcggtgt
      721 ttgatcgatt tataacctct acaaaatccg tgaaattttt ctgttgatct tctacaggat
      781 attttccaga atgaaaagag tcttcaatca ttttacataa atctgaaatt ttcacaattt
      841 atgttgttat tctaaggcaa ttaaatttat tggagtcaag tgttaggaac attcgtgata
      901 aggtaagtct ttcggttcta tttacctgag aaatgaagat tataggtatt tatcgatgca
      961 ctcgattatg ggaaaggaat taccatcagc gcgtagtaga tttaaaatgt tttcttaaag
     1021 gcagaactgg tgagtcatgt ttgggatact tccggaggtg actatggggc caccagttga
     1081 aatgacgacg acggagtaaa attaagtgtg caatatttct aataagagtt atagccattg
     1141 tttgagaaat tagatcactt caaaactgat tgatgtagag ccgttcttaa atcctgcagc
     1201 ttcacctgag aatttggctg tatagatccc ttttcgaata ttctgtgata tctcccatga
     1261 gtaggataga aatccttctt tatcagtaac atcttcttca aatcttgcta aacctcctgt
     1321 aggataaaaa acctcgcctg ttatcttgac attttgcaga acttcatttg attttttgtc
     1381 acgaacatat aataaaaaat tctgaacatc tcccatactt acttgtagag tccttagttt
     1441 gaccgaaata cacatcgcgg gtttgtccga ctttattaga ggccgaaact tgatcattcg
     1501 atcgtaaatt aatcgatgag catacctgaa gttttttcca aaatccagaa tgagggattt
     1561 gctttgccca ctttctaaat attttataac agtagctcca catttcaatt tcttaatgag
     1621 gctccatgct acgaggggta aagcaacaac gccccaactc accttttccg agtcgccttc
     1681 attgcgtgga tcaatcatct gtacctcggt catcgaagag taatggattg ttattctaaa
     1741 acgatctagg aatatcctgt ctggatatat gaatatcaaa agactctgtg gctgtcctaa
     1801 ttccaaactc ccacctagac acttggcgta atacgtacct tcagcctctt cgatctgctc
     1861 atcatcatgg ttgaatccaa atgacatctt aaaaattgta ctccaatgag tgaccatcat
     1921 aattaagagt tagtaacctc tttaccaact catcgcccaa atgacataag tatattagga
     1981 tcgtagcaac tgtttcagtc ttctaataat ggagattata gatggtcctt aacaccctta
     2041 ttttttattc acttgcatcg attgtgtccc ggctagtaaa aataacttaa cgagtttaag
     2101 aatttccaat gacccgatca taccattaat aagcaagtga aatatagtga attaaatgtc
     2161 aaggcataat cataaatgtc attatggtca ttcaagcctg ctggtgttag cgatagtagt
     2221 ttcttcttct ttgtcactca tattcttttt gttaaatgac atctatgccc agaatgaatc
     2281 taat
//
LOCUS       DASSIK010000378         3591 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_675752, whole genome shotgun sequence.
ACCESSION   DASSIK010000378 DASSIK010000000
VERSION     DASSIK010000378.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3591)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3591)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3591
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_675752"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1201)
                     /locus_tag="VFI64_06980"
     CDS             complement(<1..1201)
                     /locus_tag="VFI64_06980"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HET7243070.1"
                     /translation="MNKSQKFVILVSFLIISTLSFLYSWHYVTPLFARAKTSIEGPSI
                     NDTHLKSQLITSGLKAPTAMTFIGQDDILITEKNTGNVMRIMNGVASQQPLLHVEVAK
                     KDERGLLGVAISKNTETGKRYVFLYYTEAQRNDLGGVTPDPEGNRLYRYELVKDKLTN
                     PKLLLDLPALPEPRHNGGKITIGSDNSLYIAIGDVGGSFVAKDSETKAQNYVNGSEPD
                     GRAAIIRITQDGNPVGNGIIGSVSMSNLYYAYGIKNSFGFDFDPVTGKMWDTENGPTF
                     GDEINLVDPGFNSGWARVQGIWFVQSQEGAKTEPGKGERVPENPQGLVGFGGKGKYSS
                     PEFTWDKSVAPTALKFLTSSKLGAQYANDMLVGDANFGNIYHFGLNQNRAGLSLDGPL
                     VDKVADKV"
     gene            complement(1228..2538)
                     /locus_tag="VFI64_06985"
     CDS             complement(1228..2538)
                     /locus_tag="VFI64_06985"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HET7243071.1"
                     /translation="MSRSTFIFLISFLAILVSVVVCSGDVSSVYAKKKLKSYEGISII
                     EPGLTFQPLVSGFAFPTGMAFVDPDNILVIEKNTGRVIQIRNGTEMKEPLLDVNVANM
                     SERGLLGIAIAHNNNNISAPPYVFLYYTETEGKDGTKILGNRLYRYELVNNTLINPKL
                     LLDLPYLPGPSHDGGVVKIGPDNKSVYLVIGNLNFMQNETYMTKAQNVKDGPAPDGRG
                     GILRVTFDGDVVGGKGILGDSEMLNKYYGYGLRNSFGIGFDPVTGNLWDTENGQSMND
                     EINLVKPGFNSGWRIIQGPSFLQKDFDKKALEDFDGKGVYRDPEFDWLQTIAPTSVLF
                     FNSDKMGKKYENDLFVASVKNGTIYHFDLNEARTHLDLDGPLADKVADNSNELQSITF
                     AKGFGIITDLAMGPDGHLYILADYRRDGTIFRINQIFNSTNSTK"
     gene            2980..>3591
                     /locus_tag="VFI64_06990"
     CDS             2980..>3591
                     /locus_tag="VFI64_06990"
                     /inference="COORDINATES: protein motif:HMM:NF014017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HET7243072.1"
                     /translation="MDDMGQVLIGCSGWSYPDQPEKGGWTKVFYPSTETKRLAYYSQF
                     FNTAEMDSTFYEKFYTQMTKATFVGMARTTPDNFQFSVKVPETVTHVKRLNVMAGAIS
                     ALEEFLEKISPLKLANKLGAILIQLPPSFTVKDFKNTEEFLDRLPAGYDYAVEFRHPS
                     WETEGPWDMLKHYNIAAVMTDSPSLDRLQFLSEVIVTANHSFIR"
BASE COUNT         1043 a          769 c          623 g         1156 t
ORIGIN      
        1 caactttatc agcgaccttg tccacgagag gaccatctaa acttaatcct gccctatttt
       61 gatttaggcc aaagtgatat atatttccaa aatttgcatc tcccacaagc atgtcatttg
      121 catattgagc tccgagttta cttgaagtga gaaacttgag agcagttgga gccacagatt
      181 tatcccacgt gaattctgga gaactgtatt tgcccttacc tccgaaaccg acaagaccct
      241 gaggattttc aggtactctt tcaccctttc ctggctcagt ttttgctcct tcctgcgatt
      301 gcacaaacca aatgccttga actcttgccc aaccgctgtt aaatcctgga tccacgaggt
      361 ttatctcatc cccaaaagta ggaccatttt cagtatccca catttttcct gttacaggat
      421 caaagtcaaa tccaaagcta ttttttatcc cgtatgcgta atacagattt gacattgaaa
      481 cactaccgat tattccatta ccgacaggat taccatcttg ggtaatccta atgatagcag
      541 ctcttccgtc aggttccgaa ccattcacat aattttgagc tttcgtttcg ctatcttttg
      601 ctacgaatga ccccccgaca tcacctattg caatatagag actattatct gatccgattg
      661 ttattttacc tccgttgtgt cgcggttcag gcaacgctgg caagtcaaga agaagtttag
      721 gatttgtcaa cttgtctttt acaagttcat atctgtataa gcgattgccc tcagggtcgg
      781 gggtaacgcc tcccagatca tttcgctgag cttccgtata gtataagaag acatatcttt
      841 ttccagtttc ggtatttttt gaaattgcta ctcctaatag tcctctctca tctttttttg
      901 ctacctcgac atgaagtaaa ggttgttgtg aagctactcc attcataatt ctcataacat
      961 ttcctgtatt cttttctgta atcagtatat catcttgacc aatgaatgtc atggcagttg
     1021 gcgctttaag gccactcgtt attaattgag atttcaagtg cgtatcattg atagacggcc
     1081 cctctatgga ggtctttgct ctagcgaata gtggagtgac ataatgccaa gaatacaaga
     1141 atgaaagagt cgatattatg aggaatgata caagaatcac aaatttttga gatttattca
     1201 ttttcactta cttcgtataa tgctggatca tttagtggaa ttggtagaat taaagatttg
     1261 atttattcta aatattgtcc catccctacg gtagtctgct aatatataca gatggccatc
     1321 tggtcccatt gctaagtcag taattattcc aaatcccttt gcaaatgtga tactttgtaa
     1381 ttcattcgaa ttatctgcta ccttgtccgc aagtggacca tcaaggtcca agtgtgttct
     1441 agcctcattc aaatcaaagt gataaattgt cccattcttt acacttgcta caaataggtc
     1501 attttcatac tttttgccca tcttatcaga attaaagaac agaactgaag taggggctat
     1561 ggtttgaagc caatcaaatt ctggatccct ataaactcct tttccatcaa aatcctctaa
     1621 agccttctta tcaaagtctt tttggagaaa tgatgggccc tgaataatcc tccaaccact
     1681 gttaaagcct ggtttcacaa gattaatttc atcattcatg ctctgtccat tttcagtgtc
     1741 ccataaatta cctgtcaccg gatcaaaacc aattccaaaa ctatttctca gcccataacc
     1801 gtagtatttg ttaagcattt cagaatctcc cagtattccc tttccaccta caacatcgcc
     1861 atcgaaggta actcttagta tgcctcctct tccatcaggt gctggtccgt ccttgacgtt
     1921 ttgagctttt gtcatatatg tctcattttg cataaaatta aggttaccaa taaccagata
     1981 tacactcttg ttatcgggac ctatcttcac tacgccgccg tcgtgtgaag gtccaggtaa
     2041 atatggaagg tccaaaagta attttggatt aattaatgtg ttattaacca actcatacct
     2101 gtatagtcga ttacccaata ttttagtacc atctttaccc tcagtctcag tgtagtataa
     2161 aaatacgtaa ggaggagcgc tgatattgtt attattgtgt gcaatagcta tacccaacag
     2221 gcctctttca ctcatatttg caacattaac atcaagcaat ggttccttca tttcagtgcc
     2281 atttctaatc tggattaccc ttcccgtatt cttttctata actaggatat tgtcaggatc
     2341 cacgaatgcc attcccgtag gaaatgcaaa cccagagact aaaggctgaa atgttaagcc
     2401 cggttcaatt atactaattc cctcatacga tttaagcttc ttcttggcat aaactgaaga
     2461 aacatcacca gaacatacaa caacagaaac tagaatagca aggaaggaaa ttagaaagat
     2521 gaaggttgaa cgtgacacta tactggataa agactgcact ttttaatatc ggagataatt
     2581 agttatattt ttagctttgt ctacttccat ctcgtattga tgtttgtcta ccgttcttgg
     2641 tagttaaacc taaatggctt aacttttttt tatttaagga atctcttgcc taaccatttt
     2701 attagtctga tgagactaga atcttttgtt tgatccaaaa accatcttat ccttgaagcg
     2761 agattagttt cattcaaata cagcttcaat ctctgcccga gtgccctcaa ctttcttatg
     2821 gatattagac aagtatgggc atttatgatg gaacagataa agtcccgtta caataaattt
     2881 ttaactaact ggataactca tgctaaaaca acgagacggt ataggagctc caataaccca
     2941 tgataatacg atatatttaa tgcaactaat atctcatgta tggacgacat gggtcaagta
     3001 cttataggat gttctggttg gagttatcct gaccagcctg aaaaaggagg gtggaccaaa
     3061 gttttttatc catccaccga aacaaagagg ctagcatatt attcacaatt ttttaatact
     3121 gctgaaatgg actccacatt ttatgaaaag ttctacaccc agatgactaa agcaactttc
     3181 gtggggatgg cacgaacaac gcctgataat tttcagtttt cggtaaaagt accggaaaca
     3241 gtaacacatg tcaaaagatt gaatgtaatg gcaggcgcca tttctgccct tgaggagttt
     3301 ctggaaaaaa tatctccttt aaaattggca aataaattgg gtgcgatact aattcagctc
     3361 cctccaagct tcacagttaa ggattttaag aatacggagg aatttctaga tagactacct
     3421 gctggttatg attatgctgt agagtttcgt cacccttcgt gggaaactga aggaccttgg
     3481 gatatgctca agcattataa cattgccgct gtcatgacag attctccctc gctagacagg
     3541 ttgcaatttc tatcggaagt tattgtcaca gctaaccact cttttattag a
//
LOCUS       DASSIK010000379         2843 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1264766, whole genome shotgun sequence.
ACCESSION   DASSIK010000379 DASSIK010000000
VERSION     DASSIK010000379.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2843)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2843)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2843
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1264766"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            53..376
                     /locus_tag="VFI64_06995"
     CDS             53..376
                     /locus_tag="VFI64_06995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243073.1"
                     /translation="MLQISDVKYAMQFNERCKKGQRVKALKMIDDFYNSNIGRVKGFK
                     GYLLRESLEDPPSIVNITFWDAKEDMDSYYNGTNYSEFLEKIKPLLEQLPEKSEYRIF
                     DFRLS"
     gene            663..2174
                     /locus_tag="VFI64_07000"
     CDS             663..2174
                     /locus_tag="VFI64_07000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243074.1"
                     /translation="MYINHERLSYPVSGNGDDMKKQPRFNPLAQEAIPRWYEFYKRVK
                     LLPWWIRYNVGIARESILKDKIIELCENIGLNKTHARRLIRHAVSEFSKNGLGSDYYG
                     YHNINHELEVTYFTLLAIIGLQKKYENRFNQKDIETLFVAALFHDYDPLKRFDKPHED
                     DVESFIRGDDKIRKLVQPFKIDLDIAIALIHRTAYPFKDSIAEYARKRMSDLFIEAGI
                     PENDINTRQHYEELGWFLSICDRIAGYCLGNFEYSKELARLNAHAMGWHPSVINEKSV
                     NYFTALKEEKSMLEPVLQAIPEEFKKNFYDNVAGFREAWENEVQIRAMLRRKELNLVT
                     TVENTDYILTNLINSIMKMYKEIHAPISPNEVDFKKSLCAKETILITLRTNTQSGHVV
                     GYVNGGPLERYKLRRGTHDENFGRKNTVYMEWIRIKPEYLGETGGHLLRSGFLHEARR
                     RRYEFVSSYVHRDVIASRMNKGESIETVQKYDPDKLDYYRADLSKLVRPMPLV"
BASE COUNT          996 a          484 c          524 g          839 t
ORIGIN      
        1 gtaaaagaaa gaaaatgctt atcaatttcc tctatattta gtaataaaca aaatgctaca
       61 aatatctgat gtcaagtatg caatgcaatt taacgaacgt tgtaagaagg gacaacgcgt
      121 aaaagcctta aagatgattg atgactttta caatagcaat ataggaaggg tgaagggctt
      181 taagggatac cttttaaggg aaagtttgga ggacccacca tctatagtta acattacatt
      241 ctgggacgca aaagaagata tggattctta ttacaatggg acgaattact cggaatttct
      301 ggaaaaaata aagcctttgc tagaacaatt accagaaaaa agtgaatacc gcatattcga
      361 ttttagattg tcttgatgaa aaagtgatta ataccacact agattctttg agcgatttcc
      421 acagattgtc cacacttggc catttatcct agacatggac aaagcataat ttttctaaat
      481 attgcagtta ccacatttta ccgattcaag acatataatc aaaaatttag ggtcgcacta
      541 acggatctat ctatttcctt ccagttcacc ttccagaaat ctttaaaaga tttacaatga
      601 tttatgtaca taattaaatt atttgaggtg agtaaatcca aaataaacca tttatactca
      661 gtatgtatat taatcatgaa agattgtcct atcctgtaag cggaaatgga gatgatatga
      721 aaaagcagcc acgatttaat cctctcgcac aagaagcaat tccgcgttgg tatgaattct
      781 ataagagagt taagctactt ccatggtgga tcagatacaa tgtaggaata gccagagaat
      841 cgatcttaaa ggataaaatt attgaacttt gtgagaatat cggacttaat aagacacatg
      901 cacgaaggct tatacgacat gctgtttccg aattttcaaa aaatggtctt ggttcggact
      961 attatggata tcacaatatc aatcatgaat tggaagtcac ctatttcact ttacttgcaa
     1021 taatagggtt acagaaaaag tacgaaaata gattcaatca aaaggacatc gaaacgctct
     1081 ttgttgccgc gctctttcat gattatgatc cactaaagcg ctttgacaag cctcatgaag
     1141 acgatgtcga gtcattcatc agaggtgatg acaaaatcag aaaacttgta caaccattta
     1201 aaatagatct cgatatcgct attgctttaa tacatcgtac tgcatatcca ttcaaagata
     1261 gtattgcaga atacgcacga aaaagaatgt ccgatttatt tattgaagct ggcattcctg
     1321 aaaatgatat caacacccga cagcattatg aagaactagg atggttcttg tcaatttgcg
     1381 atcgtatcgc cggttattgc ttgggcaatt ttgaatactc aaaggaattg gctagactta
     1441 acgcacacgc tatgggatgg catccatccg tcataaatga gaagtctgta aattacttta
     1501 cggcattgaa ggaagaaaaa agcatgctcg agccagtact tcaagcaata cctgaagagt
     1561 tcaagaaaaa tttttatgat aacgttgctg gtttcagaga ggcatgggaa aatgaagtac
     1621 aaatacgagc tatgttacga agaaaggaac tgaacctagt aactacagtg gaaaacaccg
     1681 attatatact cactaattta attaattcaa tcatgaaaat gtataaagaa attcacgctc
     1741 ccatatctcc aaacgaagta gatttcaaga agtcattatg tgcaaaggag actattttga
     1801 ttacactcag aacaaatacc caaagtggac atgtcgttgg ttatgtaaat gggggtccac
     1861 tcgaaagata taagcttaga cgaggtacac atgatgaaaa tttcggcaga aagaatactg
     1921 tctacatgga atggataaga attaaacctg aatacttggg agaaactgga ggacaccttc
     1981 tacggtctgg ttttctccac gaagcaagac gtcgtcgata tgaatttgtt agtagttatg
     2041 tccatagaga cgtaatagca agtagaatga ataaaggcga atcgattgaa acagtgcaga
     2101 aatacgatcc cgataaactt gattactata gagcggattt atccaagtta gttagaccaa
     2161 tgcctttagt gtgattctcg aaagacgagt cgctttcctc aaaaataaaa ccattggtat
     2221 ttgttcatga tgactttaga acatatacca ctggaaatta ttcgacaggt gtattgattc
     2281 ggagccatac atcatatagt aatctacgat ggtaaagtca tgtcaatcta ccattagtcg
     2341 tctgacacaa gagatgccat tatctaatgt tttgggccta gtcgatctgc aactcaatgc
     2401 aaataatttt atgaatcatt ggctcgaaat ctttttgatc ttcaaatgct ggttagcaaa
     2461 atgataattc acacttatac aacgatagct aattagccta ctaacagtct atttttgatc
     2521 cctgttcatt gaaggaggga gataacgact gaagtgatat ttggctaaat acgcggtgct
     2581 gcacccaata attattggaa aacttgtaga aaactgattt tagagataat tatttgtgta
     2641 aatccacaaa caattaaata tgctgcaatt gtactgtgat tcattcactt actttttagt
     2701 gataatctct ttattttatc gatactaaag ttataccgac ttcgactcaa aatgccatgt
     2761 gtacaatatt acatatcata tgttctactt agtaatataa ggaatattct gtccttgttc
     2821 aggcatgtac tctagtcaaa cca
//
LOCUS       DASSIK010000380         3505 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1265456, whole genome shotgun sequence.
ACCESSION   DASSIK010000380 DASSIK010000000
VERSION     DASSIK010000380.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3505)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3505)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3505
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1265456"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            456..2276
                     /locus_tag="VFI64_07005"
     CDS             456..2276
                     /locus_tag="VFI64_07005"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HET7243075.1"
                     /translation="MSHEMTMLTYDAMKLGKWNLADLVPSSTAKEVGELLSNIESKVS
                     RFEGMRPFLKPEISVDVFVEMIHMIEEISEELSILAAFAHLQYYADTSSNDAAAFMTR
                     IEKFCSEIGNRLIFFDLWFKKDLDNTNALRLIDGAPRDYKEYLRHKRLAAKYSLTEPE
                     EKIINTLEVSGTGALVKIYDRMTNGFDFTISMKKGKKTFKKTITNKEKLLSMVRSHIA
                     KERENAYKALWKTYEKNNGTLGEIYHNLVLEWYDENVSLRGFKSPISVRNLSNNLNDG
                     TVDALLSVCKRNSSIFQEYFIEKADILGIKQLRRYDLYAPISSKSSNVQKYRFGKAAE
                     LVLETFRSFDRKFFEFAQRLFTDDHVDSEIRKGKLSGAFCYTVSPKRTPYVLLNFDGK
                     TRDVSTMAHEFGHAIHSMAAADKPILVSHAPLPLAETASVFAEMLLTDTLLKRLSGKE
                     RRILLAEQIDDMYATVMRQSYFTLFEIEAHDAIVKENATIDTVAERYLNNITHQFGNS
                     VAVSPDFKWEWLYIPHFYHTPFYCYAYSFGNLLVLSLYQEYIKEGDSFVPKYLEILHA
                     GGSQKPEELLRRIGMDITKESFWQQGFDFIEMKVKELKES"
     gene            2532..>3505
                     /locus_tag="VFI64_07010"
     CDS             2532..>3505
                     /locus_tag="VFI64_07010"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HET7243076.1"
                     /translation="MSILASRSFFLLAIMILLSTISSINLPAGAQEEFRQHEFVENGS
                     PHVTADSNLSVKVVAEGLDLPTTMAFLGPNDILVLEKDKGTVQRVVGGKVSSQPLLDV
                     SVANSIERCMCGIAVSKQSSTTYVFLYYTEINGADGDDRQGKQPAGNRLYRYELVNNK
                     LVNPKLLLDLPAYPGPRHNGGAIIIGPDNNLYIPVGDVDGSFKKTDSETETQNYNSGG
                     EPDGRSGILRVTQDGQPVGQGILGNGMPLRLYYAYGIRNSFGIGFDPVTGKLWDSENG
                     PGDSDEINLVEPGFNSGWQEVQGLSSMENGFDPTTLVDFGGKGKYREP"
BASE COUNT         1114 a          686 c          755 g          950 t
ORIGIN      
        1 taaacaagtc caaaagtcaa catagaatag gaaggcatct gcaaacctgt ccacaggaaa
       61 gtcctattca gagcaggcat attgtttgcc cattcccttg cgttccatgc tgaaacccga
      121 ttaagggatt ttaaattacg aactagtcat atataaccat agctgaatcc ttcttaatat
      181 caaaagtccg cggatattgg ctctggccga atatcgtcag taatcctctt ctacaatgtt
      241 tctgttctta tcttccactc aagaatactt tatgcccgat gtcgaggtac aactaactgt
      301 cattcttcct tagttcatct gtaagagctt ttcgaactca tccatacact gatgtacacc
      361 atgctactat caatttttca agaagtctaa acaaaaaaaa gggattagca agacgtaaga
      421 tgcaaaataa ataatagacg agataaatca aacatttgtc acacgaaatg actatgttaa
      481 cttacgatgc aatgaaatta ggaaaatgga atttggcgga cctagtccca agttccactg
      541 ccaaggaagt aggagagctc ctttctaaca tagaatcaaa agtgagtcgg ttcgaaggaa
      601 tgcgtccctt tctgaaaccc gagatttctg ttgatgtttt cgttgaaatg atccatatga
      661 ttgaagaaat atctgaagaa ctcagtatcc ttgctgcctt cgctcattta cagtattatg
      721 ctgatacgtc atcgaatgac gcggctgcat ttatgacaag gattgaaaaa ttctgctcag
      781 agattggaaa taggctgatt tttttcgact tgtggttcaa gaaggatctt gacaatacta
      841 atgcattaag attaattgat ggcgcgcccc gtgactacaa agaatacctt cgccacaaga
      901 gattggcagc caagtattcc ctgactgaac ctgaagagaa gataattaac acgcttgaag
      961 tgagtgggac aggcgcatta gtgaagattt acgacaggat gacaaatggt tttgacttca
     1021 caatttcgat gaaaaaaggc aagaagactt tcaagaaaac tatcaccaac aaggaaaagc
     1081 ttctttccat ggtacgaagt catatcgcga aggaaagaga aaacgcttac aaggctctgt
     1141 ggaagactta tgaaaagaac aatggaactc taggagagat ctatcataac ctagtattag
     1201 aatggtatga cgaaaatgta tctttgaggg gattcaaatc tccaatatcc gtaagaaacc
     1261 tctctaacaa tttaaatgat ggtacggtgg atgcgctcct ctccgtatgc aaaaggaatt
     1321 cttcgatatt tcaagaatat tttattgaga aggcagatat tcttggcata aagcaactca
     1381 gaagatatga tctttacgct ccgatttcgt caaaatcttc gaatgtgcaa aaataccgat
     1441 tcggcaaggc agcagagcta gtactcgaaa cgtttaggtc ctttgaccgc aaattttttg
     1501 aatttgctca gagactgttc accgacgatc acgttgattc cgaaattaga aaaggaaaac
     1561 ttagtggggc cttctgttat accgtctctc caaagagaac accttatgtg ctgcttaatt
     1621 ttgacggaaa aacgagagac gtttcaacca tggctcatga attcggacat gcaatacata
     1681 gcatggctgc tgctgacaag cctattctcg tgtcccacgc acccctccct ttagcagaga
     1741 cagcgtcagt ttttgcagag atgctgctga cagatacttt gctaaagagg ttatcaggca
     1801 aagaaaggcg cattctccta gctgagcaga tagatgatat gtatgccaca gtaatgagac
     1861 agagttactt cacactattt gaaatcgaag cccatgatgc tatagtcaaa gagaatgcta
     1921 caatagatac tgtagccgaa agatatctga acaatattac acatcaattt ggaaattcag
     1981 ttgctgtttc tcctgacttt aaatgggaat ggctctacat tcctcatttt tatcacacac
     2041 ctttttactg ctatgcatac tcatttggaa acctacttgt cttatccctt taccaagaat
     2101 acataaaaga aggagattca tttgtcccca agtatcttga aatacttcat gcgggaggat
     2161 cacagaagcc agaagaattg ctcagaagga taggaatgga tattacgaaa gaatccttct
     2221 ggcaacaggg atttgatttc atagaaatga aagttaagga gttaaaagaa tcttgatttt
     2281 ttcactattg gatttctgat ctcatatcat cttaccttca cagcttatcc agttattagt
     2341 ctgcttggcg catcgactca aagtgaataa gtctgtgatc ggccgcgtca caaaatcaag
     2401 aaggtcagcc cgcagtcgca gacacttgca gttacgggag attataaacc aggtgtatcc
     2461 aaaactgtag acaaatcagt aatggatatt tgtctcagtc acataaatta agtgttgaga
     2521 aacagtaagg gatgagtatt ctggccagtc ggtcattttt tttgctagca ataatgatct
     2581 tactttccac aatatcttca attaatctgc cagctggtgc tcaagaggaa tttaggcagc
     2641 atgaatttgt cgagaacggg agtccccatg tcactgctga ctctaacctg tcagtgaaag
     2701 ttgtagcaga aggacttgac ctacccacaa cgatggcgtt cctaggacca aatgatattc
     2761 tcgtcctgga aaaggacaag ggtacagtgc aaagagtagt tggtgggaag gtgtcgagtc
     2821 agccattgtt ggacgtgagt gtagcaaatt ccatcgagag atgcatgtgt ggaattgctg
     2881 tgtcaaaaca atcttccacc acttacgttt tcctctatta tactgaaata aatggagcgg
     2941 acggtgatga tagacaaggt aaacaaccag caggtaatcg gctctacaga tatgaactgg
     3001 tcaacaataa gctcgtaaac ccaaagttgt tactggatct gcccgcatat ccgggacctc
     3061 gtcataatgg tggggctatc ataattggtc ccgacaacaa tctgtacatt ccggtaggtg
     3121 acgtagacgg atcatttaaa aaaactgatt ctgaaaccga aacacaaaac tataattctg
     3181 ggggagaacc agacggaaga agcggtatat tgagagtaac acaagatggt cagccggtcg
     3241 ggcaaggaat attaggtaat ggaatgcctt tacgtcttta ctatgcgtat ggaataagga
     3301 acagcttcgg cataggattc gaccctgtga caggtaagtt atgggattca gaaaatggtc
     3361 ctggagacag tgatgagatt aatctggtgg agccgggctt taacagcggc tggcaggagg
     3421 tacagggatt aagttccatg gaaaatggct ttgatccaac gaccctcgta gatttcggtg
     3481 gaaaaggtaa atatcgtgaa cctga
//
LOCUS       DASSIK010000381         2853 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_977434, whole genome shotgun sequence.
ACCESSION   DASSIK010000381 DASSIK010000000
VERSION     DASSIK010000381.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2853)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2853)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2853
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_977434"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..639)
                     /locus_tag="VFI64_07015"
     CDS             complement(<1..639)
                     /locus_tag="VFI64_07015"
                     /inference="COORDINATES: protein motif:HMM:NF020366.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DcrB-related protein"
                     /protein_id="HET7243077.1"
                     /translation="MSEYPNTVPVYLSVFAQDNDAYFPDYLLTNNSETTNNDSNQSSE
                     SEGPLPQDSTASEGSGCVPSTLQNSNECFLPYENSTYGIKINYPSTWNKVTPYSDEKY
                     TTVFVQEFDKPDSSAYVIVGVDYFNFEATPSTYLARLIQNYRTQLKDFTLLSSDLNSV
                     QLAGIPGYEILYTYTGNNDEVILTRQLGAVIPGTSTAYQITYSAEVTEYPGSE"
     gene            1295..2482
                     /locus_tag="VFI64_07020"
     CDS             1295..2482
                     /locus_tag="VFI64_07020"
                     /inference="COORDINATES: protein motif:HMM:NF012956.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="discoidin domain-containing protein"
                     /protein_id="HET7243078.1"
                     /translation="MALTTFIGYFYLTLSMISVASLSMSFDIFSIARGQMEMPLPLPS
                     LSSNTSQAPLFPPQLPSPQITHPQVPSSDQDHFPQVQPPLINSTTLANNKIDLSNFLR
                     DYSANFSSCNQLAVSNIIASGSQSSSPARNAIDNNINTRWSNLGLGSLITFDFGAERF
                     LCNIDIAWYRGNERVINFTISASNDSQSWKSLVLNSSSGTSSESESYDLPDIAARYLQ
                     ITVTGSSLSDWVSISEAKVFGSLVPNSSATVSNSGPSSPIKTLSRTPLVITTVKASGS
                     QADFPPQNVSDNNVTTRWANHDPKSSITLDLGKEAELCSINVSWYKGNERTTDFTISG
                     SNDSNSFTDVLTHTSAGSTPDFEGYNLPDIVSRYVRITVTGSTESGWVSISEIKIFGT
                     QVS"
BASE COUNT          860 a          556 c          556 g          881 t
ORIGIN      
        1 ttcagatcca ggatactctg ttacttcagc tgagtaagta atttgatatg ccgtggaagt
       61 tcctggaatc actgcgccta gctgccttgt caagattact tcgtcattgt tgcctgtata
      121 tgtataaaga atttcgtaac ctggaatacc tgccagttga acagaattca aatctgaaga
      181 aagtagtgtg aaatctttga gctgtgttct ataattttga atcagtctgg caagataagt
      241 tgaaggagtg gcctcgaaat tgaaataatc tacgcccact ataacgtaag cgctggagtc
      301 tggtttgtcg aattcttgta caaatacagt tgtatacttt tcatcagaat acggagtaac
      361 tttattccac gtacttggat agttaatttt aattccgtat gtagaattct catatggtaa
      421 aaaacattca ttgctatttt gcagagtgga aggtacgcag ccacttcctt ctgaagcagt
      481 tgaatcttgg ggcaaaggac cttcagattc tgaggactga tttgaatcat tattggttgt
      541 ttctgaatta ttggttaaca agtaatcagg aaaatatgcg tcattgtcct gagcaaatac
      601 ggacagatat acaggaactg tgtttgggta ttctgacata aaaaaaattg cgcataatag
      661 agacaaggaa atgagagttg agagcatgaa aattctgaag tccatatgca ttttatctga
      721 atattaaccc attaatgaag atatgtccca aaccaagaac aatgaagctg ccgatgttaa
      781 tgttattgct aaagtcagta cgatcaataa aatggaatac aagattattt ctacctatat
      841 tcaatactcc aaaatttgta acttaattaa gtttagatca gggaagtgtt tctcaggata
      901 tttggagcat ggcatgatga tatttttctg actccaaccc gcccgacgga ctccccgctg
      961 tacatgaaac aattatacca atcaagaaaa taaaataaag aaacttgtta aaagttagct
     1021 ttcgcctaac ttgcagccac taatgattag ccgggtatac tgtcgtcatt ttccttgaga
     1081 gcaaggaaca aacaatttgg gcagggaaat aatttaagta gtacccatga aagattgccg
     1141 tagctgtatg caaggttatg tgagtggagc ttccgctatg atcgatctag aacttaccat
     1201 agacaaactg gttcgactgc aaactatcac taactaaatt gactagatga ttgcacaatt
     1261 cgtctgataa agccatgccg gaatatgtaa acaaatggca cttacaactt tcattggata
     1321 cttttacctc actttgtcca tgatctccgt cgcctcatta agcatgagtt ttgatatttt
     1381 ttcgatcgcc aggggtcaga tggaaatgcc tttaccttta ccttccctta gtagtaatac
     1441 ttcgcaagcc cctctatttc cacctcagct gccttcacct caaataaccc atcctcaagt
     1501 tccatcttca gatcaagatc actttccaca agttcagcct cctctcataa attctactac
     1561 tttagctaac aacaagattg atctctcaaa tttcttgaga gactattctg ctaactttag
     1621 ctcgtgtaat cagttggcgg tatctaatat tattgcgagt ggaagtcagt ctagttcacc
     1681 ggcaaggaac gcgattgata ataatatcaa tactagatgg tcaaatctag ggctgggttc
     1741 actcataacg ttcgattttg gtgcagaaag attcctgtgt aatattgata ttgcctggta
     1801 tagagggaat gaacgtgtaa ttaattttac gatatcggct tcaaatgata gtcaatcatg
     1861 gaagtctcta gttttgaatt caagcagcgg aacctcttca gaatctgaaa gttatgatct
     1921 tccagacata gccgcaagat atctgcagat aacagtgact ggttcttctc taagtgattg
     1981 ggtgagtatc tcggaagcta aagttttcgg cagtcttgtt cccaactcat cggctactgt
     2041 atctaatagt ggaccttcat caccaatcaa aactctttca cgcactccgt tagtgataac
     2101 taccgtcaaa gcttctggaa gccaagctga tttcccccca cagaatgtca gtgataataa
     2161 cgtcacaaca agatgggcaa atcatgatcc caaatcctct attactctgg atttgggtaa
     2221 ggaagctgaa ttgtgtagca tcaatgtctc ttggtataaa ggaaatgagc gcacaactga
     2281 ttttactatt tcgggctcta acgacagtaa ctcattcact gatgttctga ctcacacaag
     2341 tgctggaagt actccagatt tcgaagggta taacctgcct gatatagttt caaggtacgt
     2401 acggatcaca gttactggat ccactgaaag tggttgggtg agtatctcag agataaagat
     2461 ttttggaact caagtctcat agtcacaaat tttggcttta cgactcttaa tagtgtaaga
     2521 tggtccccct ccccacatta gacggtacaa ttagacgcag tataccataa attatggcaa
     2581 tatcaaaatg tttgtaactc tgcaacgaat taagccaact gcttatgggg attgttttcc
     2641 atttttagaa aacgaatcta tttgttatcg atctcttttt ttagattctg caaataactc
     2701 ctcagggccc agatgtgcat ttacgtgatc cccgtagtgg cattggttag ttgtcattga
     2761 aattggtata cagctactcc taaggtaaga gtaaagctag gatcatgcta tgggcttttt
     2821 ttgaggcctc acaaattgag ctatcttatt tac
//
LOCUS       DASSIK010000382         2378 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_977469, whole genome shotgun sequence.
ACCESSION   DASSIK010000382 DASSIK010000000
VERSION     DASSIK010000382.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2378)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2378)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2378
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_977469"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..490)
                     /locus_tag="VFI64_07025"
     CDS             complement(<1..490)
                     /locus_tag="VFI64_07025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HET7243079.1"
                     /translation="METHSTSTHRVAVLDEDLCKPKKCGLECIVYCPVNKTGGECIIQ
                     REDDGKAVISEDLCTGCGICVKKCPFEAIVIVNLAKELGDHKIHQYGINSFRVYHLPT
                     PKKGTVIGLLGRNGMGKSTIINILSGNIRPNLGKYDNHQLAWDDILDNFRGTELKSHF
                     EKI"
     gene            680..799
                     /gene="rrf"
                     /locus_tag="VFI64_07030"
     rRNA            680..799
                     /gene="rrf"
                     /locus_tag="VFI64_07030"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(905..1480)
                     /locus_tag="VFI64_07035"
     CDS             complement(905..1480)
                     /locus_tag="VFI64_07035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243080.1"
                     /translation="MPILQIKEIIDMLCGLGIQSRVGVMESDIDELYKPYYEQWLANR
                     DGFIKILTGNIDYVGTEEIMRLGPFHNMYCLIHNSHLMETHPDHPKLLNALPCYKLNK
                     GKVDEIGWNGSILAERLNKDNILCSRISRNIVDEEVRSISIRVVNYGCLIQTKVWDPK
                     GFVTIYDIIESIGKSVKNLLEEIHIGEEISN"
     gene            complement(1551..>2378)
                     /locus_tag="VFI64_07040"
     CDS             complement(1551..>2378)
                     /locus_tag="VFI64_07040"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0030145 - manganese ion binding [Evidence
                     IEA];
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HET7243081.1"
                     /translation="NGIIAVGGGSDHLPKLIIMEYFGTKDKEVRCLLVGKAVTFDTGG
                     ISLKPSEKMDEMKFDKCGGCNVIAIIKAIAQLSLPINVVGIIPAVENMPSGSSYRPGD
                     IIRMYNGKTVEVGNTDAEGRIILADALSYGVKTYSPAAIIDMATLTGASIIALGSNVA
                     ALLGNDPRLVDKLIYAANQSGEKLWQLPIFEEHEEQMKSSIADMKNIGGRSAGAITAA
                     VFLSNFVDSTPWVHLDIAGTAWFQEGSSEKSYIPKGATGFGIRTIIRLLMEMSNLQA"
BASE COUNT          670 a          510 c          412 g          786 t
ORIGIN      
        1 aaattttttc aaaatgagat tttagttctg tgccacgaaa attatccaga atatcatccc
       61 acgctaattg gtgattatca tattttccta aattgggtct aatgtttcct gatagaatat
      121 ttattattgt agacttaccc ataccattcc ttcctaagag accaatcaca gtacctttct
      181 tgggtgtagg taagtggtat actctgaaag aattgattcc gtattgatga atcttatgat
      241 ctccaagttc ctttgcaaga ttgactatta caatagcttc aaagggacat ttcttaacac
      301 aaattccgca tcctgtgcag agatcttctg aaataactgc ctttccgtca tcttctctct
      361 gaattataca ttcacctcca gttttgttta ctggacagta gacaatgcat tctagaccac
      421 acttctttgg tttacatagg tcttcgtcta ataccgctac acgatgtgta gaggtagaat
      481 gggtttccat tattattgaa aaattgatat tggcaagata ttatattcgt tgagtttcta
      541 gttctagagc gcatttggat aacatttatt atctaaaatt ggctttatag aaaaacctcc
      601 tactctgtta agaaattcct ttctcatttt gggtgtgttt aacacaatag gattaaatta
      661 ggagaaggca aaagacagat aagccggcca tagcgatagg gcgcgacccg gtccctttcc
      721 gaacccggaa gtcaaaccta tcgtcgctgc tgtgttactg atctgcgtga gcggttggga
      781 agcagcagtg ctggcatcag atttggaact aatccaattt gtatttgaat caacatcaca
      841 aactcgacct agcttgcagt aaatgatgat ttggtactcg aaatcatttt ttcgagtttt
      901 agagtcaatt gctaatttct tcacctatat gaatctcttc taacaaattc ttgacacttt
      961 tcccgatact ttcaataatg tcgtatatag tcacaaaacc tttggggtcc catactttag
     1021 tctgaatgag acatccatag ttaactactc gtatagagat tgatctaact tcttcatcga
     1081 caatgtttct actaattcta gagcataaaa tgttatcctt gtttagtcgc tcggcaagaa
     1141 tacttccatt ccaaccgatc tcatccactt ttcctttgtt caacttgtaa catggaagag
     1201 cattcaacaa tttagggtga tcggggtgag tctccatcaa atggctattg tgtataagac
     1261 agtacatatt gtgaaaaggt ccaagtctca ttatctcctc ggtaccaaca taatcaatat
     1321 tcccagttag tatttttatg aaaccatccc tatttgccaa ccactgctca taatatggtt
     1381 tgtaaagttc gtcaatgtca gattccatga cgcccactct gctctgaatc cccaatccac
     1441 acagcatatc aattatctct ttaatttgta gaattggcat taatgaataa ttgttattga
     1501 tgtactttaa ttttttaaca attcaaactc gaggcgttat cattatatcg ttatgcctgc
     1561 aagttggaca tttccattaa tagtctaatg attgtccgaa ttccgaatcc cgttgctcct
     1621 ttcggaatat agcttttctc agaagatcct tcttggaacc aagccgttcc agcaatatct
     1681 aagtggaccc atggggtact atcaacgaaa tttgagagaa agaccgcagc ggttatagca
     1741 cctgcggatc ttcctccaat atttttcatg tctgcaatag agcttttcat ttgttcttca
     1801 tgttcctcga agatggggag ttgccacaat ttttcacctg attggttcgc agcataaatt
     1861 aatttatcga ctaatctcgg atcattgcct aataatgcgg ccacgtttga tcctagtgca
     1921 atgatggaag cgcctgttag tgttgccata tcaatgatag cggcaggtga atatgtcttt
     1981 actccatatg acaaggcatc agccaaaatt atcctacctt ccgcatcagt gtttcccact
     2041 tccacagttt ttccattata catcctaatg atatcccccg gtctatacga agaccctgaa
     2101 ggcatattct ctactgcggg tatgatgcca acaacgttaa tcggtagaga aagctgagct
     2161 attgccttaa ttattgcaat aacgttacag ccgccgcatt tgtcaaattt catttcatcc
     2221 atcttctctg atggcttaag ggaaatcccg ccagtatcaa aagtcactgc cttgcctacg
     2281 agaaggcaac ggacttcttt gtctttggtt ccaaagtatt ccattatgat taacttagga
     2341 agatgatcac ttcctccacc aacggcaata attccatt
//
LOCUS       DASSIK010000383         9949 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1266356, whole genome shotgun sequence.
ACCESSION   DASSIK010000383 DASSIK010000000
VERSION     DASSIK010000383.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 9949)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9949)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9949
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1266356"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..377
                     /locus_tag="VFI64_07045"
     CDS             <1..377
                     /locus_tag="VFI64_07045"
                     /inference="COORDINATES: protein motif:HMM:NF013994.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="RNA-binding domain-containing protein"
                     /protein_id="HET7243082.1"
                     /translation="DKVISKIVKVLSLNSARFQEFNTRGHWGNQIVLLNLSLGQTLAG
                     KILKTIYTSLGDNKKTAFLSSLEQSIDEKYNLYVRIDKQSICREEISLSDQDSIKIKF
                     RPSKFRQSNKSETYRELLSSGQ"
     gene            419..919
                     /locus_tag="VFI64_07050"
     CDS             419..919
                     /locus_tag="VFI64_07050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243083.1"
                     /translation="MARRLNIETIGVKNTPDLNSSCDVVLRVKNRSPMQGNIRQLVVC
                     EDISGISSKTDLLTIQDFSRIRNNLTKKIRPNLGLEISIADARRLDANALGRWLSQAK
                     YVYRLCRSTRCQFIISSGAKSIFGMVSSRTFESILTMLNISPANYWAELSAWLDSKDT
                     VRSYVC"
     gene            913..1227
                     /locus_tag="VFI64_07055"
     CDS             913..1227
                     /locus_tag="VFI64_07055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_component: GO:0030677 - ribonuclease P complex
                     [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0001682 - tRNA 5'-leader removal [Evidence
                     IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rpp14/Pop5 family protein"
                     /protein_id="HET7243084.1"
                     /translation="MLRRKNKRRYLAVMYDPNTSQTQVKGDIQGRFMELFGSIATELA
                     YLRAYHSIQNGILIMSCDLEYLERILFTIAMMEQPMTVVMMSGTIRKLRERLIQSEIS
                     LN"
     gene            1540..2421
                     /locus_tag="VFI64_07060"
     CDS             1540..2421
                     /locus_tag="VFI64_07060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HET7243085.1"
                     /translation="MDLSYDYPLYRPPSEANSLIFQVTLGCSFNKCSFCNMYRTKQYV
                     ERSWGEIKNEIDIAHESQPDASRIFLADGDALSLSTSRLIQILEYLQGKFSKLERISC
                     YAMPRNLIQKDPSALSQLRRAGLGMLYVGIETGNDLLLKRVTKGATSRGIIQGCIRAK
                     ECGFTLSCMVILGLGGKKYTQDHIKDTARVLSDISPHYLGALTLILEEGIYAEFMTKF
                     GEKFEHLDDFEILDELQRLIEFLQPNSPIVFRANHASNIYSVGGTLPEDKGRLTSLIM
                     ELRRHPEMLKPKVLRRF"
     gene            complement(2535..3809)
                     /gene="serS"
                     /locus_tag="VFI64_07065"
     CDS             complement(2535..3809)
                     /gene="serS"
                     /locus_tag="VFI64_07065"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004828 - serine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006434 - seryl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HET7243086.1"
                     /translation="MIDPRILKENPQIIRDMLEKRNVEFPLKDRVDLDKNRRDLIVKT
                     QELRHKKNVLSKQISDKKKEKHHISNELLEMKEIGSELRNLDLQMSATETKFNELIFS
                     VPNLLDESVPIGKNSEDNVLVKVFGDIKKKNFRYQDHVDLSNSLGLLDLDRAAKVAGA
                     RFYFLKNDLVKLNQALINYALDYLAENGYTLIQPPFMIRRDAIKGAVILNDFQDVIYK
                     IDQEDLYMIGTSEHAIASMHMEEILDGKKLPIRYAGLSPCFRKEAGAHGKDMKGIFRV
                     HQFEKVEQFVYSNPESSSAEHERMLSLTEKFYQNLNLPYRVMLLCSGDTGKISSKTYD
                     LEAWMPGQDAYREIVSCSNCKEYQARRLSIRYRDRIDQETQFVHTLNSTLVATERTMV
                     AILENYQTADGDIIIPEALRKYMSGISEIRPK"
     gene            complement(3802..4059)
                     /locus_tag="VFI64_07070"
     CDS             complement(3802..4059)
                     /locus_tag="VFI64_07070"
                     /inference="COORDINATES: protein motif:HMM:NF011470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KEOPS complex subunit Pcc1"
                     /protein_id="HET7243087.1"
                     /translation="MIEKNLEITILMEISFASRKLLKAIMESLRPDNIGAPQGLSVDM
                     KDNGELLVIKISCHSGIATLINTVDEILEHISIAKAVLRND"
     gene            complement(4040..5476)
                     /locus_tag="VFI64_07075"
     CDS             complement(4040..5476)
                     /locus_tag="VFI64_07075"
                     /inference="COORDINATES: protein motif:HMM:NF044564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243088.1"
                     /translation="MGRKEFHRTLTTSAEKLKTQICSGKDISITAQNNSDGVASAGIL
                     THAIFNSGGRCSVRFVHDLTREMILKTKSEDHEFHVFVDLGVGLSKELRNSFGGNWLA
                     LNHDKISKEEITTDDENSILNPWKFGIDGDTEISSGGISYLIAKAIDKKYQMLSPLSI
                     VSALGENQDDGEKRSFVGLNSELCDESVGLGTLNIEIDILFTWRDSKPIHLSLSNTLF
                     PYIHGLTWNDKNCLEFIRNTGIPLKVNGRWRTSSETSQEEKFVLIEAITKYINEHSTT
                     GHQNLENLLAGFSYTLVHEEEGTPLRDAREFSFLLECCCAQSRPSIGLAVCAGNRNKD
                     LLEANHCLADLELEIKNSVKTIMSERWRISDDGTNIWVIGDNVARDYNFHVISSLLSS
                     YSEFYGKILIVRAETINDSYKYSVRKSRGCQFKRDLGLMLNQLSAELGCSTSGNDSCA
                     ECIVPFSKIDDFTTIFRRFTKFDDREES"
     gene            complement(5485..5946)
                     /locus_tag="VFI64_07080"
     CDS             complement(5485..5946)
                     /locus_tag="VFI64_07080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HET7243089.1"
                     /translation="MALWMARIHAHTHGRSHSTRPSSHNLPSWVSNNPSDLSSIIIQF
                     SKDGLSPSEIGTKLRDVHGVPLAKQILGKSITHLLTDNNIVTELPEDLSQLVKKALGL
                     QKHLRAHNTDRRNIRSLELIEAKIHRLSKYYKRIGKLQKKWKYAAIIAQLE"
     gene            6564..6884
                     /locus_tag="VFI64_07085"
     CDS             6564..6884
                     /locus_tag="VFI64_07085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243090.1"
                     /translation="MNKPVVMALVAVTVVMGTLIALPVFKIVNAQYGGGTGQNIEEQL
                     QLAKEKVANAKAQGAYGSGTPMLGVNIDQTAIFVGVLVAIFGGVAAAFFAMSRSKKSV
                     GATS"
     gene            7165..7443
                     /locus_tag="VFI64_07090"
     CDS             7165..7443
                     /locus_tag="VFI64_07090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243091.1"
                     /translation="MSAILGLTTVLTNAFHNLIGQIGPAYDPLFYDVMVYIFGTMLFA
                     VFLLSVIAFYLRKKGIGGGSAKEKWVSELDKYFDREQIGLIPDELHHW"
     gene            complement(8665..9258)
                     /locus_tag="VFI64_07095"
     CDS             complement(8665..9258)
                     /locus_tag="VFI64_07095"
                     /inference="COORDINATES: protein motif:HMM:NF016619.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methane monooxygenase/ammonia monooxygenase
                     subunit B"
                     /protein_id="HET7243092.1"
                     /translation="MFVFSGKPRCRVTTGIKTTIIVLIGAVIILSTVASIAPRVEAHG
                     VQAQLQSRFVRIQDETFSAQTVNNGDTITVSGTLQSLVNRPLRGWMSLFSESTNAGNR
                     WEFVSRDPPGNIIDIPAQGTLPYSITAKALEPGIYHVHTQLNLEHIGPGLGPGQTIQV
                     TGAPIFKPVPWGNVAYQVILIGAGLGVTFATRPWQVI"
BASE COUNT         2966 a         1913 c         1893 g         3177 t
ORIGIN      
        1 aagacaaagt gatatctaaa atagtcaagg tactttctct taattccgct aggtttcagg
       61 aatttaatac aagaggccat tgggggaatc aaatcgttct gttgaacctt agcttgggac
      121 agacacttgc cggcaaaata ttaaagacaa tatatacttc attaggtgat aataaaaaga
      181 ccgccttctt aagctcgcta gagcagtcaa tcgacgagaa atataatttg tatgtccgga
      241 tagataaaca gagtatttgt agagaagaaa tatctctgtc agatcaagat tcgattaaaa
      301 ttaaatttag gccatctaaa tttagacaaa gtaataaatc tgagacttac agggaattgc
      361 tatcatcagg gcaatagatc ttggaataga ttttgatagt attggagagg ctattataat
      421 ggctaggaga cttaatattg aaactatagg agtgaaaaat acccccgact taaattcgag
      481 ctgcgatgtc gtattacggg taaaaaatag atctcccatg caaggtaata ttcgtcaatt
      541 ggtcgtttgt gaagacatat ccggtattag tagcaagact gatcttttga caattcagga
      601 tttctcgaga attcgtaata accttacgaa gaaaatcagg ccaaacttgg gcttagaaat
      661 ttctattgct gacgccagga ggctagatgc aaacgcttta ggacggtggt tgtcgcaagc
      721 taaatatgtt taccgacttt gtaggtcaac tcgatgtcag ttcataattt caagtggcgc
      781 taaatcgatc ttcgggatgg tatcatcacg tacatttgaa tccatcctga caatgttaaa
      841 tatatctcct gcgaattact gggccgaatt atcagcgtgg ttagactcaa aagatacggt
      901 aagatcttac gtatgttaag gagaaaaaat aagcgtcgtt atcttgcagt aatgtacgat
      961 ccaaatacat ctcaaaccca agtgaagggg gatatacagg gacgttttat ggaacttttt
     1021 gggagcatag ccacggaatt ggcatattta agggcgtacc attcaataca aaatgggatt
     1081 ctgattatga gttgtgattt ggagtacctt gaaagaatcc tttttacgat agcaatgatg
     1141 gagcagccaa tgactgttgt gatgatgtca ggaactataa ggaagcttcg ggaacgtctg
     1201 attcaaagtg aaattagtct aaactgaacg cttaaaaatg tgataggatt tgtacccatg
     1261 gggatgaagt gagtatatgc tgctccagtc tgagttttac acgatgacga actcgcgacg
     1321 aactgacccg aaaataatag catatttcat tacactatgt caagcagaaa accagggtat
     1381 taaattatcg gcaaaatcta gtgataactc acctcaagta gaagacaaat gaaaccatat
     1441 catggtctac acctctttga ggtaccgtag ataagaaatc cagattttat ttgggcattc
     1501 gcataggtta aatgtgatgc caactgattt taaatcctta tggacttatc ttatgattat
     1561 ccgttgtata gacctccttc tgaagctaat tcattgatct ttcaagtcac tttggggtgt
     1621 tctttcaaca aatgttcctt ttgcaacatg tacagaacta aacagtatgt tgaaagatca
     1681 tggggagaaa ttaaaaatga aatagatata gcccacgagt cacagcctga cgctagcaga
     1741 atatttctcg ccgatggaga cgcattaagt ctttctacgt ccagattaat ccaaatactt
     1801 gagtatctcc aaggaaaatt ctccaaattg gagcggatat cttgttacgc catgcctaga
     1861 aatctcatcc aaaaagaccc gtctgcgtta tctcaattgc gacgcgcagg attgggtatg
     1921 ctatatgtag ggatagaaac tggcaatgat ttgttgctca agagggttac aaaaggggct
     1981 acgtctcgtg gaataattca aggatgtatt cgagccaagg aatgcggatt taccctttct
     2041 tgcatggtaa tcttaggcct gggaggaaaa aaatacaccc aagatcatat aaaagatacg
     2101 gcgagagtat tgagtgacat atctccacat tatcttggtg cattaacgtt gatcttggaa
     2161 gaagggattt atgccgaatt catgacaaaa ttcggtgaaa aatttgaaca tctagatgat
     2221 tttgagatac tcgatgaact ccaaagattg atagagttct tgcagccaaa ctcgccaatt
     2281 gttttcaggg caaaccatgc ttcaaacata tattctgttg gaggaacact acccgaagac
     2341 aagggtagat taacatcttt aataatggaa ttaaggcggc acccggaaat gctaaaacct
     2401 aaggtattga gaaggttcta acgatcagag aacttcccca cgtccgatat atcctcctag
     2461 attttttggt acaattacct attacaggag gattgtttca cacaagtcgt gtgcgacaca
     2521 tcacgggcaa catgttattt tggtctaatt tcagaaatac cggacatgta tttgcgaagg
     2581 gcttctggaa taatgatatc tccatcagct gtttgataat tttcgagaat ggcgaccatt
     2641 gttcgttcag tggctactaa agtgctattg agggtatgaa caaactgggt ctcttgatct
     2701 atcctatctc tataccgtat gcttaaccta cgcgcctgat attctttgca attcgagcaa
     2761 gaaactatct ctctataggc gtcctgtccg ggcatccatg cttctaaatc ataagttttg
     2821 gatgaaatct tgcctgtgtc tccgctacat aatagcatca cccgataagg taggttgagg
     2881 ttctgataga atttttcagt aagggataac attctctcat gctccgcgct agaactttct
     2941 ggatttgaat acacaaattg ttctaccttt tcaaactgat gaaccctgaa aatccctttc
     3001 atgtccttgc catgagcccc cgcctccttt ctaaaacatg gacttaaacc agcgtaccta
     3061 attggcagct tttttccgtc caatatttct tccatatgca tcgacgcaat agcgtgttcc
     3121 gaagtcccta tcatgtaaag gtcttcttga tcaattttgt aaattacatc ctgaaaatcg
     3181 ttcaagatca cagctccctt tatcgcatct cgccttatca tgaatggtgg ttggatcaaa
     3241 gtatacccat tctctgcaag atagtccagt gcataattga ttaatgcttg atttaactta
     3301 actagatcat ttttcagaaa gtaaaatctc gcaccggcga cctttgctgc gcggtccaga
     3361 tcaagcaaac ccagggaatt agacaagtct acgtgatctt gatacctgaa attctttttt
     3421 ttaatgtcac caaaaacttt cacgagaacg ttatcctctg aattcttgcc gatgggtacc
     3481 gactcatcta acagattggg aacagaaaag ataagctcat taaattttgt ttcggtagcg
     3541 gacatttgaa gatctaaatt tcttaactcg ctcccaattt ctttcatttc taaaagttca
     3601 ttggatatat gatgtttctc ctttttttta tcggatattt gtttagaaag gacgttcttt
     3661 ttgtgcctta attcctgagt tttgactatt aaatctctcc tattcttgtc taagtctact
     3721 ctatccttta aagggaactc aacgttcctt ttttctaaca tatctcttat aatttgaggg
     3781 ttttccttta gtattcgagg atcaatcatt acgcaaaacc gcctttgcga tggaaatatg
     3841 ttcaaggatc tcgtccactg tattgattag tgtcgctatc ccggaatgac aggaaatctt
     3901 gatgactaga agttccccat tatctttcat atcaactgat aagccctgtg gagctccaat
     3961 attatctggt cttaaagatt ccattattgc cttcaataat tttctactcg caaatgatat
     4021 ttccatcagt attgtaattt caagattctt ctctatcatc aaatttggta aacctcctaa
     4081 aaattgtagt gaaatcgtca atctttgaga atgggactat gcattccgca caggaatcgt
     4141 taccactagt gctgcatcct aattcagcag ataactgatt caacattaaa cccagatctc
     4201 gtttgaattg gcatcctcgt gacttcctta ctgaatactt ataactgtca tttatcgtct
     4261 cggctctgac aattagtatc ttaccataga attcactata acttgaaagt aaagatgata
     4321 taacatgaaa attgtaatct ctagctacat tgtcaccaat tacccagata tttgttccat
     4381 catcagagat ccgccatctt tctgacatta ttgtctttac agagttcttg atctctagct
     4441 caagatcggc tagacaatga tttgcttcta atagatcctt atttctatta ccagcgcata
     4501 ccgccagacc aatacttggt ctagattgag cacaacaaca ttcaagtaag aatgaaaatt
     4561 ccctggcgtc tctaagtgga gtaccttctt cttcgtgaac tagcgtatac gaaaatcctg
     4621 cgaggagatt ctcaagattc tgatgtccag tcgtagagtg ttcattgata tattttgtta
     4681 ttgcctcaat taagacgaac ttctcttctt gactggtttc agatgaagtg cgccatcgtc
     4741 cattgacctt caatggaatc cctgtatttc taatgaattc taggcaattc ttatcattcc
     4801 aagtcaatcc gtgaatgtac ggaaatagcg tgttcgaaag agaaagatgt atgggtttag
     4861 aatctctcca agtgaacaat atatcgattt ctatatttag agtcccaagc cccacacttt
     4921 catcgcataa ttcagagttc agaccaacga atgatctctt ttctccatca tcttgattct
     4981 cacctaacgc agatacaatc gataaaggtg ataacatttg atatttttta tctattgctt
     5041 ttgcaatcaa gtatgagatg ccacccgatg aaatctctgt atcaccatca atgccaaatt
     5101 tccagggatt taatatacta ttttcatcgt cagtggttat ttcttctttc gatatcttgt
     5161 cgtgattaag ggctagccag ttacccccaa atgagtttct aagttctttt gacaaaccaa
     5221 cgcccagatc cacaaaaacg tggaattcat gatcttcact cttggttttc aaaatcattt
     5281 cacgagtaag gtcgtgaaca aatcgtacag agcatcgacc ccctgagtta aatattgcat
     5341 gtgtcaaaat acctgctgag gctacgccat cagagttatt ttgagcagtt atcgatatgt
     5401 cttttccgct gcagatttgg gtttttaatt tttcggccga cgttgttagg gttctatgga
     5461 attctttgcg gcccatttaa ttgattattc caattgagct ataattgcgg catacttcca
     5521 tttcttttgt aattttccga tcctcttata atatttggat aacctgtgaa tcttagcctc
     5581 tatcaactcc aatgatcgga tatttcttct gtctgtgtta tgagctctca gatgtttttg
     5641 aagaccaagc gcttttttaa ctaattgaga caggtcttcg ggcaattcgg tgacgatatt
     5701 attgtcagta agtaaatgcg tgatgctttt gcctagaatt tgttttgcaa gtggaactcc
     5761 atggacatct ctgagttttg tgcctatttc actaggactc aaaccgtctt ttgaaaattg
     5821 aattattatc gatgataagt ctgacggatt atttgaaacc caagaaggta aattatgcga
     5881 ggagggacga gtagaatgag atctaccgtg agtatgggca tgtatccttg ccatccataa
     5941 tgccataaaa taacgcatat cttaatgtta cttagcatta tagttgccac aaaattttaa
     6001 gcgtcagagc atttatgaat tctatctatg tcgctacaaa tcttgctgag gatttgatag
     6061 taaaaaggtg tggtattttt gtttgtcgtc tctgtcggag ttgcagttta ttttcgtcat
     6121 gaactaattg ccaaacccca attatctgca aggtggaaac cagccaataa tggtatgcat
     6181 cgtccgagtc gtgttggtga ttaaatgtat tttccaacat gtcttcttat cttttatgtg
     6241 cacattgatg gtattgattc cacagtacaa tattccgcaa tactagcaca agttgcttag
     6301 gcatcgagtt aacaaaaaac ttttttttat ttattatatc tagttcattt taataataaa
     6361 tatcatttct agaaagtgtt ggcgttttag aatggtccac atcaattatc tagactaaca
     6421 gaaaagcgat cctctttcta agaaatgtag ttgtaatcat attgcaagta taatctgaat
     6481 cagcctaaag ttacaagcat tcacctatct gtgaatctag tgacataaag gttaaataat
     6541 tgggttcggc catagggtat agtatgaata agccagtagt aatggctctc gtggctgtaa
     6601 cagtggttat gggaactttg atagcactac ctgtttttaa gatagtaaat gcgcaatacg
     6661 gaggcggaac aggacagaat atagaggaac aactacagtt ggctaaagag aaggtagcca
     6721 acgcaaaagc acagggtgca tatggttcag gtacccctat gttgggagtt aatatagatc
     6781 agactgctat attcgtagga gtactagttg ctatatttgg tggagttgca gcagcattct
     6841 ttgcgatgag cagaagtaaa aaatcagtag gcgcaacaag ctaatcctac accatttttt
     6901 tgttctagtt tttttgaatt tttgatactt tgtgcccata atctctattt ccgcacgtgt
     6961 atttttgttt gagcttaggt ttccagatgg gatatgccgc ttagtaaatc gtttcaagct
     7021 gaatttaatt caccaagttg gtattcaacc taatcgttac tgtttcgagt ttattcccaa
     7081 atgagaagtt taaatcctct actgggttta cgattagaac aataaccaaa atgtatatat
     7141 catagcgtag agttgctaaa tgtgatgagc gctattctgg gacttacgac agtgctaacc
     7201 aacgcatttc ataacctaat aggtcagata ggtccagcat atgacccctt gttctacgac
     7261 gtaatggtct acatattcgg tacaatgctg tttgcggtgt tcctgttatc cgtgattgca
     7321 ttctatttgc gaaagaaagg tatcggtggt ggttccgcga aggaaaagtg ggtaagcgaa
     7381 ctggacaagt actttgatcg cgagcagatc ggattaattc cagacgaatt gcatcactgg
     7441 tagctgaggg aagaaatcaa aaattcccaa taccttcatt tctcataaat tctatctttt
     7501 ctttttttca tgatatgtct cattcgtcta cccgttatgg tgggccattt tggttgacta
     7561 ctataacgtc cgagttcttc tatgtttaaa aaactataaa actcataatt cttcaaagtc
     7621 tatattttga tatactcgac aacaagctcg tcatagacgt tggtaaaatg cttttcgctc
     7681 aagctataag tttatcctga accgtgcggt tgtctatcgt gtggtttaca tttttgtaga
     7741 tgagcatcgg attagagggt cagcgtatcg gatgaaaaaa gtatgcaggt aattgcttat
     7801 actttgtaag ataagcaaac tttatgatta aagatgaagt agcatgcagg aaaagcatag
     7861 gaacatgacc ataagataaa tatcaaataa caatgtttta ggacaaaaaa ctgacatctg
     7921 ttaaagaatt ataaatcgat gaaatgttat tcgggacagt gataagagcc ttttactagg
     7981 atcttgtctg tgataggaat tagctaaaaa gtgacccaaa ttaggtcgct cataaatttt
     8041 cactgaattt caaaaaagct tctccgataa tagcagttat cagcctaaac aattcattta
     8101 actttatacc agggttttta ctatggagta aaggaaacca tcccgacgcc cccagtcata
     8161 ccacagatgc agcgaaatcc ttagaatttt cagtttgacc cctacaacat atttccaaac
     8221 caaaacgccc agccgcagca accaccggta atgctcaccg cagcagagat acccatacat
     8281 ccacagccga tgcttaccgt cgattcttat gacggagatg aaaatgtatg tctatatatc
     8341 cttatacgct tgcaggaata tttaccatac aatataacag aatcttttct tgtcgtctgt
     8401 tttttgaagg ttcccagtgg ttcgttacaa acgatccgtt ggtatgtgat atttacaaag
     8461 ttagcatcag cttcataact tcatcgaagg ttttttcaat gatgcataat cattgtctac
     8521 acctatacta gaacaaaatt tctaatgtac cttgagcagg ggaagagcaa aagattgatg
     8581 gcttcactag gtggattcat cttgcaatta ttacataagt taaaataaaa attgaaggta
     8641 aaaataaagg ggttttggtt tttcttagat tacttgccac ggtcttgttg caaatgtgac
     8701 tccaagtcca gcgcctatta gtatgacctg gtatgctaca ttgccccatg gaactggctt
     8761 gaatattggt gcgccagtaa cttgtatagt ctggccaggg ccgagtccag gacctatatg
     8821 ctcaaggttc aattgggtat gcacatgata tattcctggc tctagtgcct ttgctgtgat
     8881 cgagtaaggt aaagttcctt gagctggtat atcaataata tttcccggtg gatctctaga
     8941 aacgaattcc catctattgc ccgcattggt tgattcactg aacaatgaca tccatcctct
     9001 caaaggtcta tttacaagac tttgaagggt accgctgaca gtaatggtat ctccattgtt
     9061 tacagtctgt gctgaaaatg tctcatcttg gatcctgacg aatctacttt gaagttgcgc
     9121 ctgtacaccg tgagcctcta ctcgaggtgc tatggatgcg accgtagata gaataatgac
     9181 tgcccctatt aatacaatta ttgttgtctt aattcccgtc gtaactctac acctaggctt
     9241 accagaaaaa acaaagatat atgctttgct gttagtggcc ctgctaactt cgtgttggtc
     9301 gtcaacctca ccgtcatgtt tgtaactttt ggcggattcg ccaccaaaaa ctacttacaa
     9361 tgaactcgta tcaacatccc acgccatttt gaaaatacca taaatttgaa aattttgcta
     9421 aacagataca tgttagtaga ctaatctgaa aactttgatt ggtatgatta tgtagcgtga
     9481 atttaagaga taaacatggc taaatttggt tgatttatgt gaattcggac gtattgattt
     9541 aaatatccat tttgccatga ggtatttatc caaaaagtaa ggggggaatg gatatttgtt
     9601 taaagccact cctgaatttt tgattttatc ttactctcaa aatcattgcc atacatcaat
     9661 ttaagacatt gaacaaacgg tgaataaatt cccccaaatg ccttacaagt tgtttgatac
     9721 cctgctcact aatttctcct tactcatctg ctcgtttcag tggggtaata ccttctacta
     9781 atgtaaataa ctctctctta taacgtcaaa aaattcttcg attcattctc atcctataaa
     9841 gctaaacgta caagatttct gtcagttccc atatgttttc agacaggaat ttttatcatt
     9901 tgaccttcgt acttttgctc tccttttttc gtgtaagtga acgataacc
//
LOCUS       DASSIK010000384         3745 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_680282, whole genome shotgun sequence.
ACCESSION   DASSIK010000384 DASSIK010000000
VERSION     DASSIK010000384.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3745)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3745)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3745
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_680282"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            307..2301
                     /locus_tag="VFI64_07100"
     CDS             307..2301
                     /locus_tag="VFI64_07100"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HET7243093.1"
                     /translation="MNKRKATEIRVDFSLKREVLFVVIGAMLGAVSMLIPTVFEVGMG
                     IPYYVTWVAFGHVIGVYSSNAAFAGIVIHAITAISIGIVIGVFLYKTGILNISKISNG
                     FLYGLLAGSVILVVFFIPVYFLILLPEINRTIETMTQSSYSEYETTSPSYSFPLVIAS
                     YVIMHLVFGITVGLTSSTLSIKFGSRYRCSKCDVSFSRIDSYQKHLELIHGEKPIRLT
                     RILILGGGFAGIEVLRQLQKTFQNDIGIDITLVSRDNFFLFTPMLPEISSGMIETRHI
                     VTPLRVFCNRAKFYEANIESIDLDNKQVVISHQIGKQTNPIEWRSHILKYDYLIIALG
                     NETNFFGMDGAAKQAFTLKSLGDAIVLRNHVINMLEQADIEHADLDLRKSLLTFVVVG
                     GGFSGVEIVGELNDFVLDSIKHFYHNLQKTYTRIVLVNSGGRILPEVTEELAEFALQK
                     IRKNGVEVLLNTRVIDVTSYSVRLDNGIDISTQTIIWAGGGKPPSLLSALSCEHDKSG
                     RIVTNNFLEVLGYTDSIMALGDCACITDPNTGKPCPPTAQHAIRQGKVAAINLISRIK
                     DQENSKKAFDYKTKGVMTLIGRRNGVGILLGFKVHGFTAWWFWRSYYLLNLPTVEKKL
                     RVMVDWFIDLFFKRDVTRLKSTTEEPPLRSKASDHSSVKV"
     gene            complement(2347..3426)
                     /locus_tag="VFI64_07105"
     CDS             complement(2347..3426)
                     /locus_tag="VFI64_07105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243094.1"
                     /translation="MSKDNLPYFSKIVKLVVIMSVLVILSSGFGRLAAADNNWYVGQG
                     VKANMYVTYKIQSHDTNQGQPFTMTIYFKEFNSTGHYWVAPVYVNDQGAIINGTFHLS
                     DLDLTALGSSQIPPSMSPYRSAYESSLQWLAAFVAKPGQSLSAAYWGKIASIGGPPIS
                     PTGQEKVSVPAGSFDTTVISWHKGVDNKIWINKDMPYPVKAQTFADVTAGNPPVLYQF
                     ELLSTGQGQPPVPKNQPEIPKPPITLQTGRGTYYIELLWQPPSIKSGTPTQFGILFMD
                     SSQTTVPGVSYSFKVTGLNNSVLEDLHDQKALDGTGTQTVKFDKPGPVDVVVSVDGVQ
                     GQNLGDFVERSDFNLIVVPSGNTTK"
BASE COUNT         1150 a          672 c          762 g         1161 t
ORIGIN      
        1 atccaaatat cacgatgtaa gcaaatcaga tcacatcgca gtataggatt tgagctcaaa
       61 tttggtaatt ataatatcat agcatcaaaa attctaaaga ctacctcatt taatagcgat
      121 gttgtaacta tcattcctta gaatagctcg atcagtgtgt gataatacac tttaatttca
      181 aaatgaatgg tggttgtata gttcctgtag gaccatgaac cttatctatg aaggggacta
      241 tcaaattaat taataagtct ctaacatgtg taatcatata gcgtgaagct gcggaagtaa
      301 ttaataatga acaagagaaa agcaacagaa atcagagtag atttttctct taaacgcgag
      361 gtattattcg ttgtaatagg ggcaatgtta ggggcagtat ctatgcttat tccaactgtt
      421 tttgaagttg gaatgggcat accctattat gttacatggg tagcatttgg tcatgtcata
      481 ggggtttact cttctaatgc ggcttttgca ggaatagtaa ttcatgcaat aactgctatt
      541 tcaataggca ttgttatcgg agtttttctc tacaaaactg gaatattgaa cattagtaag
      601 atttcaaatg gttttcttta tgggttactc gcgggttccg taatcctagt tgtttttttc
      661 atacctgttt actttttaat attgctacca gagataaatc gtacgataga aaccatgacg
      721 caatcatcct atagtgaata tgagacaaca tcacctagtt acagcttccc tttagtgatc
      781 gcaagttatg ttattatgca tctagttttt ggtatcactg taggacttac ttcgtctact
      841 ttatcaataa agtttggtag ccggtataga tgttcaaaat gtgacgtttc cttttctagg
      901 atcgattcat atcaaaaaca tctagaactt attcatggag agaagccaat tcggttaact
      961 cgcattttga ttttgggagg aggatttgca ggaattgaag ttcttcggca gcttcagaaa
     1021 acatttcaga atgatatagg aatagatata acactcgtaa gtagagacaa ctttttcctc
     1081 tttacaccca tgttacctga gatatcatca ggaatgatag agacaaggca tatcgtaaca
     1141 cccttgagag tcttttgcaa tagagcaaaa ttttatgagg ctaatataga atcaattgat
     1201 ctggacaata agcaagttgt tataagccat caaatcggaa agcaaacaaa tcctattgag
     1261 tggcgtagcc atatcctgaa atatgattac ttaatcatag cattaggaaa tgagacgaac
     1321 ttctttggga tggatggggc agctaaacaa gcatttacac taaagagcct aggtgatgcg
     1381 atagtattac gcaatcatgt aataaatatg ttagaacagg ctgatattga acatgcagat
     1441 cttgacctca ggaaaagctt gttgactttt gtggtggttg gaggagggtt ttccggtgtt
     1501 gaaattgtcg gggaattaaa tgactttgta cttgattcaa taaaacattt ttaccacaat
     1561 ctacaaaaaa cttatacgag gatagttctt gtgaattcgg gtggaaggat ccttcctgag
     1621 gtaactgagg aactagcaga gtttgcatta caaaaaataa gaaaaaatgg agtcgaagta
     1681 ttgttgaata cacgtgtgat cgatgtaacg tcctatagtg ttagactaga taatgggatc
     1741 gatatttcaa cccagacaat tatctgggct ggaggaggaa agcctccaag cttactatcg
     1801 gctctctcat gcgagcacga taagtctggg agaatagtaa ccaacaattt tcttgaggtt
     1861 cttggataca ctgattccat tatggcgcta ggtgactgtg catgtattac cgatcccaat
     1921 acgggaaagc cttgtccacc aacagctcaa catgcaataa gacagggaaa ggttgcggcg
     1981 attaatctaa tctctagaat caaagatcag gaaaatagta agaaggcatt tgattacaag
     2041 acaaaagggg ttatgacatt gataggtagg agaaatggtg ttggtatttt acttggattt
     2101 aaggttcatg gatttacagc ttggtggttt tggcgctcat actatctcct gaaccttccc
     2161 accgtagaga aaaaattgcg ggtaatggtt gactggttta tagacctatt cttcaaacga
     2221 gatgtaacca ggcttaaatc aaccaccgaa gaaccgcctc ttagatcgaa agcatctgat
     2281 cattcatcag tcaaagtatg atgaatctgc tatctacaca ataatatgct ctcaatttaa
     2341 ccatacttat tttgtcgtat ttcctgaagg tacaacaatt agattaaagt ctgagcgttc
     2401 aacaaagtct cctaaatttt gtccttgcac tccatctaca cttactacga catcaactgg
     2461 accaggttta tcaaacttca ctgtttgggt tcccgtgcca tcaagtgcct tttgatcatg
     2521 tagatcttct agcacgctat tgttgagccc agtaactttg aaactgtaac taacgcctgg
     2581 gacagtagtt tgagagctgt ccataaacag aatgccaaat tgtgttggag ttccagattt
     2641 tattgacggt ggttgccaca gtaactctat gtagtatgtg ccacgacctg tttgcaaagt
     2701 tattggtggc tttggaattt caggttgatt tttcggtaca ggaggctgac cttgtccggt
     2761 tgatagaagt tcgaattgat acagaacagg aggatttcct gcagttacat cagcgaaggt
     2821 ctgtgcctta actggataag gcatgtcttt atttatccaa attttgttgt cgacaccttt
     2881 gtgccacgat atgacagtag tgtcaaaaga tccagcaggc acggaaacct tttcctgccc
     2941 agttggagaa attggcgggc ctcctattga tgctatcttt ccccagtaag cagcacttaa
     3001 cgactgacct ggctttgcaa caaaggctgc aagccactgt agtgaacttt cataggcact
     3061 tctataagga gacatggatg gcggaatctg cgaactgccc aaagctgtta gatccaaatc
     3121 acttagatgg aacgttccgt ttattattgc tccttggtca ttgacataca ccggagctac
     3181 ccaataatga cctgtactgt taaattcttt aaaatatata gtcattgtaa atggctgccc
     3241 ctgatttgtg tcgtgacttt gtattttata tgtaacatac atgttggctt ttactccttg
     3301 accaacgtac caattgttat cagccgcggc caaccgacca aaaccagaac tcaaaattac
     3361 aagcacgctc ataatcacaa ctaatttaac tatcttacta aagtacggta agttgtcctt
     3421 actcattgta ttctatattg gcgttcaaaa ttatatatct taggtaacta tgttatctct
     3481 atactggact gcttagtttc tattagttac catttatgaa aaaaatgagt caaatgccat
     3541 atcacctgaa ctagtagccg gagttattct aaaagtggtc aaatccgact gccgtgactt
     3601 tagaaatatt gtagctgagg atgcgaaatt gatttaagac gttagaagta ataattctga
     3661 taaggaattt caaacgttca tggaaaaaag caatggcatc tgggcttgtt tcatgagata
     3721 aaatcaacac gtcttgtgat tttac
//
LOCUS       DASSIK010000385         3173 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1268209, whole genome shotgun sequence.
ACCESSION   DASSIK010000385 DASSIK010000000
VERSION     DASSIK010000385.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3173)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3173)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3173
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1268209"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(480..839)
                     /locus_tag="VFI64_07110"
     CDS             complement(480..839)
                     /locus_tag="VFI64_07110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243095.1"
                     /translation="MKGYRKLTLITAMLGLVILVPFVVGYAYVNSLIGLPILGLFLGW
                     LLLYVFLLLIVNFASLYIAFRIKNTKIAGILLIVCGVVILASTNYFGIPSFVLFCIAG
                     VLALREKPTFSHLIKKE"
     gene            1060..2034
                     /locus_tag="VFI64_07115"
     CDS             1060..2034
                     /locus_tag="VFI64_07115"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HET7243096.1"
                     /translation="MKPIIRALKEVDLDEADRISRIAFGTFLGLLDPGTFYGDADFVR
                     TRFKADPSLSLAAEMYGQLVGSNFVANWGSVGFFGPLTVRPDLWDKGIGKNLLNKTLE
                     IFERLGTKHIGLFTFSHSPKHIHFYQKYDFWPRFLTNVMSKPVGSASKTKEHEAPTPT
                     SWFKYSDVPHDRKSTILGNCSSLTNSIYKGLDLRNEIVSITTQKLGEVILLKANAKND
                     LGGLAVCHCGPRTEAGSGTCYVKFGMAANEGQSAPDNFDHLLEACERYAASQGLMTLL
                     AGVNIGNLGAYRKMISKGFKTEYQGVMMTKNNDPGYHKEDVYAIDDWR"
     gene            2133..2951
                     /locus_tag="VFI64_07120"
     CDS             2133..2951
                     /locus_tag="VFI64_07120"
                     /inference="COORDINATES: protein motif:HMM:TIGR01486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIB family hydrolase"
                     /protein_id="HET7243097.1"
                     /translation="MSQGVVFTDIDGTLIDIFTGQFDATRLLVKKLTESKIPLILCSS
                     KTKVEQELIREEAELSEPFIVENGGAIFLPLSYFDGTLNFKARKTDNYQVIELGKPAA
                     IIMSKLKELRENYDLDFRAASEMSIDELCKIALMEKEAALRMIQREYGETIVEINNRD
                     FGKFVTKVEDIGLKVISGGRFMDVTGGNNKGTAVKVLIELFKHKYKNKVVFFGIGDSP
                     NDESMLQLVDFPMLVQRTDGTWQSSHIERIMRLKGVGPEGWKLAFNEIMNYFKR"
BASE COUNT         1071 a          562 c          627 g          913 t
ORIGIN      
        1 ctattggaat ttttgttatt ctcgttaaaa tggtggcatt accacatact gccgattcct
       61 cacactatcc tcaggtgggt cttaaggact accagcaaga gtttgtagaa tcatatcaag
      121 taaaagtcaa gtcaagatag ccaagatagt tagttacgaa atagttaacc agattctgac
      181 ccttaattta ggatatgaac tttgctaatt catatactac aggattgggg ttgaatgtga
      241 aaattgaatg tataacagaa agtttatcag catagttcca ataaataaat aaattactat
      301 cgacaggcat aagtagcacc agcatgccgc caactatatt tcaggaatat gcgtgaaatc
      361 atggagtcgt acacttaaaa gttcaaacag gtttatactc ctcaagatca gtaacataaa
      421 aattttacta tgcgaaataa aaggcactct tcttgtttgt ctttccttca agcccacctc
      481 tattcttttt tgatcagatg ggagaatgtt ggtttctctc ttaatgcaag tactcccgca
      541 atacaaaata agacaaacga gggaattccg aagtaatttg tcgaagcgag tataacaacc
      601 ccgcatacta ttaacaggat accagcaatc ttcgtattct ttattctaaa ggcaatatag
      661 agactggcaa aatttacaat aaggagaaga aatacataaa gtaatagcca gccaagaaag
      721 agacctaaaa ttgggagtcc aattaaacta ttgacatatg cgtagcctac tacgaacggt
      781 actagaataa ccaatcctag cattgcagta atcagtgtaa gttttcgata tcccttcact
      841 tcactttatc ctcaaacctt ataccataat aattacttgt ctctctttta gttaccccat
      901 ggatatgtga tcaatgcaat accaattttc ctatgagtga agatctttaa gagctataaa
      961 gtccaatcac atcgatatta atgccgattc atattgatat actcttcaag aggagatttc
     1021 tcaaaacgtt agtaaagcag aaacccatac gtactaacaa tgaaacctat aatccgagcg
     1081 ctcaaagagg ttgatctaga cgaagcggat agaatctcta gaattgcttt tggtacattt
     1141 cttggattac ttgatccagg gactttttat ggggatgcag attttgtcag gactcgtttc
     1201 aaagcagatc cctcattatc tttagcagct gaaatgtatg ggcaattggt aggatcgaat
     1261 tttgttgcga attggggtag tgtgggattt tttggaccgc tcacggtacg tccagacttg
     1321 tgggataaag ggatcggaaa aaatctgctg aataagacat tggaaatatt tgaaagactg
     1381 ggaacaaaac atatcgggtt attcacattt tctcacagtc ctaaacatat ccatttctat
     1441 caaaaatatg acttctggcc taggtttctc actaacgtga tgtcaaaacc tgttggctca
     1501 gctagcaaaa caaaagaaca tgaagctccg actccgacaa gttggttcaa atattccgac
     1561 gtcccacatg acagaaaatc aacaatcctc gggaattgta gttcgctcac taattcaatc
     1621 tataaaggtt tggatcttag gaatgaaata gtctctatca ctacacagaa gcttggtgaa
     1681 gttatccttc ttaaggctaa tgcaaagaat gatttaggag gtctagcggt atgtcactgc
     1741 ggaccaagaa cggaagcggg aagtggtaca tgctatgtta aatttggaat ggcagcaaat
     1801 gaaggccaat ccgcccccga taattttgac catcttctcg aagcttgcga acgctatgct
     1861 gcatcgcaag gactaatgac acttctcgct ggcgtcaata ttggtaactt gggtgcatac
     1921 agaaaaatga tatcgaaggg tttcaagaca gaatatcaag gagttatgat gactaaaaat
     1981 aatgatccag gttaccataa agaagatgtc tatgcaatag acgattggag ataatccaaa
     2041 tatgaaaccg cgcagttttc taccatgaaa gtcgacttta ctctaatgta attaattata
     2101 aatggtacat cttaatcaat taacgcaacc aaatgtctca gggagttgtc tttacggata
     2161 ttgatggaac actaatagat atttttactg gtcaatttga tgcgacaagg cttctcgtaa
     2221 aaaaacttac tgagagtaaa attcccttaa tattatgctc atccaaaact aaggtagaac
     2281 aggagcttat cagggaagaa gccgagcttt ctgaaccatt tattgtggaa aatggtggtg
     2341 ctatattcct tcccttatcc tattttgatg gtactttgaa ttttaaagca agaaaaactg
     2401 acaattatca agtcatagaa ctaggaaaac cggctgcgat aatcatgtca aaacttaaag
     2461 aattacgcga aaattatgat ttggatttca gagcagcatc ggagatgtca atagatgaac
     2521 tttgtaaaat agcactgatg gaaaaagagg ccgcactgag aatgattcaa agagagtacg
     2581 gagaaactat agtagaaatc aataatcgtg atttcggtaa attcgttact aaggtggaag
     2641 acattggtct aaaggtaatt tctgggggaa gattcatgga tgttacggga ggaaataaca
     2701 aaggcacagc cgtgaaagta ctaatcgaac tgttcaaaca caaatacaaa aacaaggttg
     2761 tattctttgg tattggagat agtcccaatg acgaatcaat gctgcagcta gtcgatttcc
     2821 ctatgttagt tcaacgaact gatgggactt ggcaaagctc acatattgaa aggataatga
     2881 gattaaaagg agttggacct gaaggatgga aattagcatt caatgaaata atgaattatt
     2941 tcaaaagata accagcattc cacaatagag acactaaaat tttaataaag taagagatat
     3001 gtcttcttgt gatctatgac aaggtggatc ttgattcagt cgggaatact cgttccgagg
     3061 gctgataata tacatcctgg taagcctttg tcataatttc aaagtatttc gtgggttgga
     3121 tctttcctgc tccagttgct ttgtcataca tgatatcgac cagattgaag ttt
//
LOCUS       DASSIK010000386         2976 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_375368, whole genome shotgun sequence.
ACCESSION   DASSIK010000386 DASSIK010000000
VERSION     DASSIK010000386.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2976)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2976)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2976
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_375368"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..402
                     /gene="pfdA"
                     /locus_tag="VFI64_07125"
     CDS             <1..402
                     /gene="pfdA"
                     /locus_tag="VFI64_07125"
                     /inference="COORDINATES: protein motif:HMM:TIGR00293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prefoldin subunit alpha"
                     /protein_id="HET7243098.1"
                     /translation="VADMVQQSKMLESYLNDILTRESALSRLIEEANLASEALQALSG
                     ESDTDSMIPLGIGIYARSTIGTLGNLLVNIGAGITVEKSKASTIDYVESRIKEFELGI
                     RQLTLQKQQVTARLNQIQNEINAVIQNSTNK"
     gene            450..1823
                     /gene="ftsY"
                     /locus_tag="VFI64_07130"
     CDS             450..1823
                     /gene="ftsY"
                     /locus_tag="VFI64_07130"
                     /inference="COORDINATES: protein motif:HMM:TIGR00064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005047 - signal recognition particle
                     binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HET7243099.1"
                     /translation="MFDKLKKALSEVAKNLGQKELSEKDLDRILEELFLSLLESDVAE
                     QVALSIIDNIKSDLTQNRLEKSSGSEQIVKSRLVIMLSDLFSASGKMDLIQKIIEKKN
                     SKLGPYVIVFLGINGTGKTTTVAKFSNLLHKQGLSVIMAAADTHRAGAIEQLSQHGTN
                     LGIKIISQRYGADPSAVARDAVEHAKKNYIDTVLIDTAGRMQTSKNLMEEVSKIVRVI
                     KPDAKIFVGDSLAGNDTVNQAKEFFQYTNFDGAILTKSDADSKGGAAISIVHVTTKPI
                     LYLGIGQQYDDLVKFDSEKFLVSVLGDIHSDHKVNAEQKQGGKIASVSDSAIEAIEEN
                     EENFNDVSMGQIGTLTSKDTSACKPETGADLIEPIVGDANIQTDTLQKPDTISRDSTP
                     EVQKPKNKGFFSGLLRRDRKENQDSLIPNKVGNQEQKDRPKKNELSGGNDEVVYLNDQ
                     DIDDLIE"
     gene            1816..2754
                     /gene="argF"
                     /locus_tag="VFI64_07135"
     CDS             1816..2754
                     /gene="argF"
                     /locus_tag="VFI64_07135"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004585 - ornithine carbamoyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HET7243100.1"
                     /translation="MNKKDVLSTQDLDESEITSLIRKGTDFKSGKIESVDLLKGKTLG
                     LIFQKPSTRTRVSFEIAMFQLGGNTIYLNSNDLQMSRGESVEDTAKTVSLYVDCIVAR
                     VFSHVDLQDLARFSKVPVINGLSDLFHPCQVLADLMTIMECKHHFKGLHLAWIGDGNN
                     VCSDLLIGCMKTGISVVAAIPKGFEPPNSVLDVVRSVGYKNNCSFDVTREPTEAVKNA
                     DIVVTDTFVSIGTENEREARRAVFLPKYQVSSSLMESAKADSIFMHCLPAKRGEEVTA
                     DVIDGKSSVVWIEAENRLHMQKALLEYVLTNSVRMS"
     gene            2794..>2976
                     /locus_tag="VFI64_07140"
     CDS             2794..>2976
                     /locus_tag="VFI64_07140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243101.1"
                     /translation="MQNAMKLPRNIIENDPSWFSLPSEDDYTMKWINKGLELMAQCNS
                     NDNFCLVFSTSMNRHSL"
BASE COUNT         1027 a          523 c          623 g          803 t
ORIGIN      
        1 gtcgcagata tggtccaaca atcaaaaatg cttgaatcat acttgaatga tattttgact
       61 agagaatctg cactcagcag attgattgag gaagctaatc tcgcttcaga agccctccaa
      121 gcactttctg gggagtctga cactgattct atgattccac tgggaattgg aatttatgct
      181 agatctacaa ttggtacgtt agggaacctt ttagttaaca ttggggctgg cattacagtt
      241 gaaaaatcta aagcatctac tatagactat gttgaatcta gaatcaagga gtttgaactt
      301 ggaataagac agttaacttt acaaaagcaa caggtaactg ccagattgaa ccaaattcaa
      361 aacgagatta atgctgttat tcagaattca accaataagt gaaacataat gataatgagg
      421 atgagaccgt ataggaaggt tcaacctaat tgtttgataa gctaaaaaaa gccctatcag
      481 aagttgcaaa aaaccttggt caaaaggagt tatctgaaaa ggatctcgat cggatacttg
      541 aagaattatt tctctcgtta ctagaaagcg acgttgccga gcaagttgct ttatcaataa
      601 tagacaacat aaaatctgat ctcactcaaa atcggcttga aaagagtagt ggttctgaac
      661 aaatcgtgaa gtcaagacta gttattatgc ttagtgacct tttttcggca agtggcaaaa
      721 tggatctaat tcagaaaata attgaaaaaa agaattcaaa gctaggacca tacgtgattg
      781 tttttttagg cataaatggt actggcaaaa caactaccgt tgcgaaattt tccaatttgt
      841 tacacaaaca gggcttatcg gttattatgg cagcagcaga tacacacaga gcaggtgcaa
      901 tagaacagtt gtcacaacat ggtactaatc tcggtataaa aataatttct caaagatatg
      961 gggcagaccc atcagctgta gcgagagatg ccgtggagca tgcaaaaaaa aattatattg
     1021 atacggtgct tattgatacc gcaggacgaa tgcaaacatc aaagaatctc atggaagagg
     1081 taagtaagat tgtcagagta atcaaaccag atgctaaaat ttttgtagga gattccttgg
     1141 ctggtaacga tactgtcaat caagcaaagg aattttttca gtacaccaat tttgatggag
     1201 caatattgac aaaaagtgat gctgactcaa aagggggtgc tgctatttca atagtgcatg
     1261 tgactacgaa acccattcta tatcttggaa tagggcaaca atacgatgat ttagtgaagt
     1321 ttgactctga aaaatttctt gtatctgtac ttggcgatat acattcagat cataaagtca
     1381 acgcagaaca aaaacaaggt ggaaaaatcg cttcggttag cgactctgca atagaagcta
     1441 ttgaagagaa tgaagaaaat ttcaatgatg tcagtatggg acaaatagga actcttactt
     1501 caaaagacac gagtgcatgc aagccagaga caggcgctga cttgattgaa ccgatagtgg
     1561 gtgatgcaaa tatacaaact gacaccttgc aaaagcctga cactatttct cgcgattcca
     1621 cacctgaagt acaaaaacct aaaaataaag gctttttcag cggattatta aggcgagata
     1681 gaaaagaaaa tcaagacagt ctaatcccaa ataaagtagg gaatcaagaa caaaaggatc
     1741 gtcctaaaaa gaacgaactc tcaggaggaa acgacgaagt agtctatctt aatgatcaag
     1801 atatcgatga tcttattgaa taagaaagat gtactgagca cacaggatct tgacgaatca
     1861 gaaataacat ccctaatccg taagggaaca gattttaaaa gtggaaaaat tgaatcagta
     1921 gacctattaa aaggaaaaac tctcggatta atttttcaaa aaccgtctac cagaactcgt
     1981 gtaagttttg aaatagcgat gtttcagctt ggtggaaaca ctatatacct caactcaaat
     2041 gatcttcaaa tgtctcgtgg agagtctgtt gaagataccg cgaaaacagt atcactctat
     2101 gttgattgta tcgtagctag agttttttct catgtggatt tacaggattt ggctcgtttt
     2161 tctaaagtgc ctgtaataaa cggactatct gatctgtttc atccatgtca ggtcttggct
     2221 gacctaatga cgatcatgga gtgtaagcat catttcaaag gtttgcacct agcctggata
     2281 ggtgatggga ataacgtctg tagtgattta ctcattggct gcatgaaaac cggcatctcg
     2341 gttgtcgctg caatccctaa gggctttgaa cccccaaatt ccgtattaga tgttgtaaga
     2401 agtgttgggt ataagaataa ttgttcattt gacgtcacaa gagagccaac tgaggcggta
     2461 aaaaacgccg atatcgttgt gacagacact ttcgtttcga ttggcaccga aaatgaacga
     2521 gaagctagaa gagcggtatt tcttccaaaa tatcaagtta gttccagttt gatggagtcg
     2581 gccaaagctg attccatttt catgcattgc ctgccagcca aaagaggaga ggaggttaca
     2641 gcggatgtaa tagatggaaa atcctccgta gtgtggatag aagctgagaa tagattacat
     2701 atgcagaagg cgcttctaga atacgtactt actaacagcg tcaggatgtc ctaagtccga
     2761 atcttaatta aacacctccg aaattaagta tgtatgcaaa atgcaatgaa actccccagg
     2821 aacatcattg aaaatgatcc cagttggttt tctctgccat ccgaggacga ttataccatg
     2881 aaatggatta acaaaggact agaattaatg gctcagtgta atagtaatga caatttctgt
     2941 ctcgttttct caacttcaat gaatagacac tcccta
//
LOCUS       DASSIK010000387         3330 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_375726, whole genome shotgun sequence.
ACCESSION   DASSIK010000387 DASSIK010000000
VERSION     DASSIK010000387.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3330)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3330)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3330
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_375726"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(226..408)
                     /locus_tag="VFI64_07145"
     CDS             complement(226..408)
                     /locus_tag="VFI64_07145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243102.1"
                     /translation="MIKDANGDGIYDLQVYPGGPTTIVGVGDNHLGYVGFRSTSNSKV
                     LLDDGAMDVIVKDWRR"
     gene            complement(492..565)
                     /locus_tag="VFI64_07150"
     tRNA            complement(492..565)
                     /locus_tag="VFI64_07150"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(529..531),aa:Pro,seq:cgg)
     gene            complement(670..1968)
                     /locus_tag="VFI64_07155"
     CDS             complement(670..1968)
                     /locus_tag="VFI64_07155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HET7243103.1"
                     /translation="MQQLHYDVAIIGGGILGCSIAYFLASFSNASAVVIEQENNFGMH
                     ASRRNTGKVHAPFLYDPAKRSLTAKAALKGFDMLRKYCKVNSLPFKEDGVMEVATSEG
                     QIDTLHRYLEWGYKNGLTEDQLKFLAKEEVAKVEPNVSCHSAIVCFRDASTDYELITK
                     QLICDAQKFGCRVMPNSRFRNFAHNNHLIIRTEGTEKEIIANYVINAGGGYSLNIAHG
                     VGLATEYRDLYFRGEYWQAPHEYSDLTHMSIYSVPKYSEYPFLNPHWIIRADGRREVG
                     PNAVPVFSPYSYEWTDDLKNSMAKIFQSSTSIGVMRLMMNSQFIRLASKEFWSSISKR
                     AMVNRVRQFLPSLKPSAFTTRGVAGIRSSLTDKEGNFVPEMLILENDYSLHILNYNSP
                     GATGALPVGAKIVSGLLEKGYLHKSSMKGESLWDISEILE"
     gene            complement(2081..2245)
                     /locus_tag="VFI64_07160"
     CDS             complement(2081..2245)
                     /locus_tag="VFI64_07160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243104.1"
                     /translation="MASTMIGSDAITNYKEGQLKQSRILDRDVLLGWNGIDSKVDYVF
                     ILAYLLRLTL"
     gene            3082..>3330
                     /locus_tag="VFI64_07165"
     CDS             3082..>3330
                     /locus_tag="VFI64_07165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HET7243105.1"
                     /translation="MSKYHYPAGAVDVIIEKDDKLLLIRRKNEPFKGLLAIPGGFVNE
                     GEKVEDTAVREMTEETNLTIEPTDILGVYSDPKRDPRGH"
BASE COUNT         1046 a          667 c          588 g         1029 t
ORIGIN      
        1 cttggctaga gtaattgtca ctttgacata actctgtacg tccaagtcgc taatttgata
       61 cttgcacttt aatctaatac tttaatctaa ttatttacgt tgaaaaactc tggtaacgac
      121 tcttgcgaaa aaaagttgtt gccacgcgta caaaaaatca tgaccaactt tccatcgtgt
      181 atccgctcgt ttgatttttc ctcagcatag catccgagac gcaagttacc ttctccagtc
      241 cttaactatg acatccattg caccgtcatc caatagtacc tttgagttag atgtgcttct
      301 aaagccgaca taacctaaat gattgtcgcc cacgccaaca attgtcgtgg gtccgcctgg
      361 atacacttgt aaatcataga tgccatcacc attagcatcc tttatcattt taatttgggg
      421 cctaacatct ctttgttcat agttatctgg taagaagatg tagggttggg ctccattatt
      481 attattttta ctggggttgg ccggatttga accggcgacc tccagcgccc gaggctggca
      541 tcataccaag ctagacaaca accccaatat cgaaagcaac tatcacgccc tattataaga
      601 tattacgttt cttttcaaaa tacaatcaat aataatgagg atgaagaagg atgaaaagtc
      661 aaattcagtt cattctaaaa tttcactaat atcccataag gattctcctt tcatagaaga
      721 tttatgcaag tagcctttct caagtaatcc cgatactatt tttgctccaa caggtagcgc
      781 gccggtagct cctggagagt tatagttcaa gatatgcaga gaataatcat tttctagaat
      841 taacatctct ggtacaaaat ttccttcttt atctgttaaa gaagatctaa taccagctac
      901 acctcgtgta gtaaacgcag atggtttcag acttggaaga aattgtctta ccctatttac
      961 catcgctctt ttagatatag agctccaaaa ctccttggat gcaagtcgta tgaactgtga
     1021 attcatcatt agtctcatta cgcctatgct ggtagatgat tggaaaattt ttgccataga
     1081 gttttttaaa tcatccgtcc attcatatga ataagggcta aataccggca ctgcatttgg
     1141 tcctacttct cttctaccat cggctcttat tatccaatgg ggattgagga atggatattc
     1201 tgaatacttg ggaacggaat aaatgctcat atgagtcaga tcagagtatt catgtggggc
     1261 ctgccaatat tcgcctctga aatagagatc tctgtattct gtagccaggc ctacaccatg
     1321 agcaatattt aaggaatatc ctccaccagc gtttataaca taatttgcaa taatttcttt
     1381 ttcggttccc tcagtcctaa taatcagatg gttattatgc gcaaagttcc tgaatctgct
     1441 attgggcatc acacggcatc cgaacttttg ggcatcgcat atgagttgct tcgtaatgag
     1501 ctcgtagtct gttgacgcat ctctaaaaca aacaattgca gaatggcaac tgacattagg
     1561 ttcaactttt gctacttctt ctttggctag aaatttcaat tgatcttctg tcaggccgtt
     1621 tttgtaaccc cattctaagt atctatgcaa agtgtctatt tgcccctcag aggttgcgac
     1681 ttccattacc ccatcttctt tgaatggcag gctattcact ttacagtatt ttcttagcat
     1741 atcaaatccc tttagtgcag ctttggcagt gagacttcgt ttggccggat catagagaaa
     1801 cggagcatgg accttacctg tatttcttct acttgcatgc attccaaaat tgttttcttg
     1861 ctcaataaca accgcggaag catttgagaa agaagctaaa aaataggcaa tagagcaacc
     1921 taatattcct ccacctataa ttgcgacatc ataatgaagc tgctgcaaat aattgattac
     1981 gtattatgat atacagatac atatttgata tggtgtaatc attgatgaat tacggaccag
     2041 ggtataatat gatatctagt aaatctattg taattgtgac ctaaagtgtc agacgcaata
     2101 aataagccaa gatgaaaaca taatctactt tagagtcaat accattccag cctagcagca
     2161 catcgcggtc taaaattctt gattgtttta actgaccttc tttgtaattg gtgatagcat
     2221 cactgccaat catggttgac gccattgtag aaagaaatga tgggcatcaa gatcctaaca
     2281 ccgtttgaat tcaatataga taaaacttca attattaact cgacggatgg aaaagaacaa
     2341 cattggcaaa aaagcattat gtagtcgatg tacataagag aaaatcatag cttctaacgg
     2401 attcggtagc gaaccatacg gagatctctg tgctgattgt ctagaggctt ctagtaacta
     2461 tgcatgtgat atttgtgaca aggaattaag atgcgatgct tacgaatcac atttacttca
     2521 agagcatagt agagaacaaa tggcgaaata catatcaatg actcaaaaag attcaaggat
     2581 tccatgattc tttccttccg gcttaacata tagcgtttaa acgtttagcc gtaactcacc
     2641 gtgcataatg actttgtcac tctttgcttg cttaactttc ttaaatatcc taatcaaaat
     2701 gacgctttag catgatgaaa ctcattcgta catccttatt ttctatctat gaactgttct
     2761 taaatggtta tcgaactcct ctccagttcc caaagttcta ccacataaat aacatttcaa
     2821 gataggttca ggtttaagaa aaaaacgctt taagaattca aggattcctc ccattgataa
     2881 tgaatatact acaaatttaa taagagttcc acttcaatga taattctcct ttaatggcat
     2941 tattcacctt ttaaacacaa tatattttgg atctaataga tgttcaaatt atggcattaa
     3001 tcgtgttcaa gtcaaagact gaagaaaaag caataatgga gaattagaca aaaacaaata
     3061 atcaaccaca cttgtaagta tatgagcaaa tatcattatc ccgcaggtgc cgttgatgtt
     3121 ataattgaaa aagacgataa actgcttctc ataagaagaa agaatgaacc attcaaaggt
     3181 ttgcttgcca ttccaggtgg ttttgtgaat gaaggagaaa aggttgaaga tacagcggta
     3241 agagagatga cggaagagac gaacctcact atagaaccaa cagacatttt aggtgtatat
     3301 tccgacccta aaagagatcc acgtggacat
//
LOCUS       DASSIK010000388         3202 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_178266, whole genome shotgun sequence.
ACCESSION   DASSIK010000388 DASSIK010000000
VERSION     DASSIK010000388.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3202)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3202)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3202
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_178266"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            398..1042
                     /locus_tag="VFI64_07170"
     CDS             398..1042
                     /locus_tag="VFI64_07170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243106.1"
                     /translation="MTTSDQTEIIIRRTVSEDIPKIVNLQKESFPYLARYGNIWHPDE
                     LESHLRIFPEGQSVADLHGEIVGSASSLIVHLDPEYADHTWKEITADGMMTSHNPQGD
                     SLYGADISTAPKYRHEHIGKRLYDFRKETVIKFNLRRMIGGGRLFNYCDYADKMSAVE
                     YAQRVINGEFKDPVLSFELENGFKFIKILPNYLDDVRSLNYASFIEWLNPSYGK"
     gene            1015..1842
                     /locus_tag="VFI64_07175"
     CDS             1015..1842
                     /locus_tag="VFI64_07175"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HET7243107.1"
                     /translation="MAKSKLRQVMSMRAIDCHVHLNSYNDSKGSIDEILVELLQSMGV
                     CDIDASIVISSYKVNKDRPSTDKIIRITEKHDNLAVVGGYSIENHTIEDFRNYRKWLL
                     ENKLKGIKIYCGYEHYFPTDKKYQKIYDLCTEFEVPLMVHCGDTFASDAKLKYAHPLN
                     VDEVATDNPELKIVICHLGNPWILDCQEVLYKNRNVYADISGLFFGPVSDYYEQCLIT
                     KIKELLSYTSSPHHLLFGSDWPISDVRLCIRLVNKLGLSRKDCDLLMFGNTQKIFKV"
     gene            complement(2063..2962)
                     /locus_tag="VFI64_07180"
     CDS             complement(2063..2962)
                     /locus_tag="VFI64_07180"
                     /inference="COORDINATES: protein motif:HMM:TIGR01297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HET7243108.1"
                     /translation="MESQRTAAVHRGKKLKIVLLLTSSYFAIQLAGGIMAGSLALIAD
                     AGHMLTDVAGLLLSLLAIGFTRKPATPQKTYGFYRMEILATLTNSVVLISISFYIIYE
                     AYQRIFHPQEVQGIPVILIASVGLVVNLVSLRLLSHSSLHEHKGGQENLNIKSASLEV
                     FSDTLGSAAVMVTAIIIIYTGFYLADPIASIAISLFILPRTWSLMKKSVHILMEGVPP
                     NISHDEVKKAIMQIKGVTGIFELHIWSITSGMDALSAHVVIIDPSKSLAILKEINSIV
                     EKQFGISNITIQIETYHPEADRF"
BASE COUNT         1052 a          583 c          615 g          952 t
ORIGIN      
        1 tcattcgtgg tggatgagac gcattacacc gccaaattct ggacatgatc aacttcttga
       61 agctgatcaa tgccgcaaat tgatccagcc ctaacagagg ggtatttaac cacctagcgc
      121 tgtcaaagat tttccattgg atagataaaa gcacccctcg aaccagaaat cattaatatt
      181 cgataaaaat caaaacggca atctgccttt ttgcccacat gatttaatct ttactatcgg
      241 ttggtgttgg ccggatcgcg cctgtcatat tattgttagt gtcatcaatg ttctagcttt
      301 atgaaacttc cattaaattg gcttctccta cctgataaga taaaagtcag acatgttcta
      361 cacaagaatt atatcaatca aatttcaaac ttgaattatg acaacatcag atcaaacaga
      421 gataattatc agaagaactg ttagtgaaga tattccaaaa atagtaaatt tgcaaaaaga
      481 atcatttcct tacttggctc gatacggtaa catatggcat cctgacgaac ttgagagtca
      541 tcttcgcatc tttcctgaag gacagtctgt cgccgaccta catggtgaaa tagtgggttc
      601 agcaagcagc cttattgttc atttagaccc agagtatgcg gaccacacat ggaaagaaat
      661 cactgcagat ggtatgatga caagtcataa ccctcaagga gatagcctgt atggtgcaga
      721 catatccacg gccccgaaat atagacatga acatattggc aagcgattgt atgattttag
      781 aaaagagaca gtaataaaat tcaatttacg aaggatgata ggtggcggta gacttttcaa
      841 ctactgtgat tatgctgaca agatgtcagc ggtagagtat gcacaaaggg taatcaatgg
      901 agaatttaaa gatcctgttc tttctttcga attggaaaac ggattcaaat tcataaaaat
      961 attgcccaac tacttagatg atgtgcgttc attgaactat gctagcttca tcgaatggct
     1021 aaatccaagt tacggcaagt aatgtctatg agggccatag attgtcatgt gcatctaaat
     1081 tcatataatg attcgaaggg atcaatagac gagattctag ttgaactgct tcaaagtatg
     1141 ggtgtgtgcg acatagatgc ctcaattgtc atatcgtcat ataaggtaaa caaagatcgc
     1201 ccctccaccg ataaaataat tcgaataaca gaaaagcacg ataatctcgc agtagtgggc
     1261 ggctattcta ttgaaaacca cactattgag gattttagaa attatagaaa gtggctatta
     1321 gagaataagt tgaaaggaat caagatttac tgcggatatg aacattactt cccgacagac
     1381 aaaaaatatc aaaagatcta tgacctatgt acagagtttg aggtaccact tatggtacat
     1441 tgtggagata catttgctag cgatgcaaag cttaagtatg ctcatccttt gaacgttgat
     1501 gaagttgcaa ctgataatcc agaactaaaa atcgtaattt gtcatttggg aaatccttgg
     1561 attctcgact gccaggaagt attatacaag aacagaaatg tgtacgcaga catttctggg
     1621 cttttctttg gtcctgtaag tgactattat gaacaatgct tgataacaaa aataaaagag
     1681 ctgcttagtt atacttcaag tccacaccat ttactttttg gaagtgattg gcccatatca
     1741 gatgtaagac tttgcattag gcttgtgaac aaactgggtc tttccagaaa agattgtgat
     1801 ttacttatgt ttggtaacac ccagaagata ttcaaggtgt aacaaaagac acacaggcag
     1861 ataattcgac tagctacaat aaaataattt taagcatcag aaatttatca atattttatt
     1921 ataaaatatt atgcgacata ctatgaattg ttcggtatat tttttaagtt cccaaatatt
     1981 tcttcaagta aacaaagatc tgaacagcgt ccggtaggcg ggcttctatc agataaatcc
     2041 tgctccatgc taaaaaaata agtcagaacc tgtcagcttc tggatgataa gtttcaatct
     2101 gaatagtaat attgcttatt ccaaattgtt tttcaactat tgaatttatc tcttttagaa
     2161 tggctagtga tttacttgga tctattatta ctacgtgtgc tgacaatgca tccatgcccg
     2221 aagtaatact ccagatatgc aattcaaaaa taccagtaac cccttttatt tgcatgatag
     2281 ctttctttac ttcatcatgg gatatgtttg gcggaacacc ttccatcaat atatgaactg
     2341 attttttcat tagcgaccat gtccgtggaa gtataaaaag agaaatagca atgctagcta
     2401 ttggatcggc cagataaaat ccagtgtaga tgataataat cgcggtgacc ataacagcag
     2461 cggaacctag tgtatcacta aatacttcta aagaagcgct tttaatattc aggttttctt
     2521 gacctccctt gtgttcatgc aaacttgaat gtgacaatag tctcagggat actagattca
     2581 ctacgaggcc tacgcttgca ataagaatca caggtatgcc ttgcacttct tgcggatgga
     2641 aaatgcgctg atacgcctca tatataatgt agaaggagat tgatattagc acgacactat
     2701 ttgttaaggt ggcaagtatc tccattctgt agaatccata tgttttttga ggagttgcgg
     2761 gtttacgggt gaaaccaatt gccagaagag aaagtaacaa tcctgctaca tcagtaagca
     2821 tgtgaccagc atcggcaatc aaagccaaac taccagccat tatacccccc gcgagctgta
     2881 ttgcaaaata agaagatgta agaagtaaga cgatctttag cttctttcct ctatgcactg
     2941 cagctgtcct ttggctttcc acgataacat cattattgtc ttatgaattg ttttaaattt
     3001 agctttctat tttttttgaa caggaacatc atgatcagaa cttgatatta atatttgatc
     3061 ggatgtctac tatagaaact gtaggagtca accaaacctg caaattagta tacatagcta
     3121 tcacatgtga tccagatgga attattcaaa taagactgta acaagtggtt agtgtatgac
     3181 tgaggaagct gataaggagg aa
//
LOCUS       DASSIK010000389         2173 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_682717, whole genome shotgun sequence.
ACCESSION   DASSIK010000389 DASSIK010000000
VERSION     DASSIK010000389.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2173)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2173)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2173
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_682717"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(14..307)
                     /locus_tag="VFI64_07185"
     CDS             complement(14..307)
                     /locus_tag="VFI64_07185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243109.1"
                     /translation="MHIILIIREHLESCMIPPNCTIIIEGKQCGLTSTCVISVATDGE
                     EYMIATLCDEHFVDFKKQIKYMQEIGKLPKGNVRFQMIKPVGTDCVLNSKNCS"
     gene            753..1715
                     /gene="tfb"
                     /locus_tag="VFI64_07190"
     CDS             753..1715
                     /gene="tfb"
                     /locus_tag="VFI64_07190"
                     /inference="COORDINATES: protein motif:HMM:NF012600.4"
                     /note="stabilizes TBP binding to an archaeal box-A
                     promoter; responsible for recruiting RNA polymerase II to
                     the pre-initiation complex; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription initiation factor IIB"
                     /protein_id="HET7243110.1"
                     /translation="MEIRVDKSLQAETSAANSNSAKTNDALCCGQCNNDTLIFDMLSS
                     EYVCSTCGCVSTERLYNGEDNSYSSRTGYSDRSRTGMPESLAIHHKGLSTLIGMNDTD
                     ARGKVLDPIQRVSIQRLRTWNNRSQLNDSISRNLEKALKFLNNFGDKLYLSQAVMESA
                     AYIYRKAAVKKLAKGRSTLGLVGAAIYAACRETATPKTVSDIASVCNLTSKDVMSHYK
                     LILRELSLQIPVLHGTDYVTLIANRLRLSEKTKRDALRIYSLVQDNGISIGKNPRALA
                     GAVIYLASQNCNEFLRQVEICQVADISTVSLRKRCKEIKSAVHI"
     gene            1959..>2173
                     /locus_tag="VFI64_07195"
     CDS             1959..>2173
                     /locus_tag="VFI64_07195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243111.1"
                     /translation="MDPLDKAILVSIYSSGFDSGITPYDYFKSRTVVPEDLFNSRLKK
                     LNKLGFVDLTNPVSLSFLGRGSIKVVLV"
BASE COUNT          696 a          398 c          412 g          667 t
ORIGIN      
        1 cgtaataact attctaagag caattcttag aatttaagac gcaatcagtc ccgaccggtt
       61 taatcatttg aaaccgaacg ttgcctttgg gaagctttcc aatttcctgc atatatttta
      121 tttgcttctt aaaatccaca aagtgttcat cacataaagt tgctatcatg tattcttcac
      181 catctgtcgc aactgatatt acacaagtag aagttagtcc acattgctta ccttcaatga
      241 taattgtgca attaggtgga atcatacaag attcaagatg ttcacgtatt ataagaatta
      301 tatgcatttt agcatcagaa gggttccata ataaaatgaa actgagttcc ttttgcctct
      361 atttcgttct tttgaatgaa cttcgattta catccatgaa tcagtacaaa ttccgtttcg
      421 aagagtttga gttgatggag tactcattac aaaaaaggtt tcataccatc accttgaaag
      481 atggattttt ttaacaagtc ctttaacgtg ataactacaa gtgttatttg aatgagaggc
      541 tgtgatggtc aaaatgcaga ttaggctctt gtctcctcgc tcctcaggac acagtttata
      601 tatcactgta ggatacaatt tcaagaatat taagatatta aaagtttttc ggtactgtaa
      661 tcagaaaacc taacaaagta tccttcgaaa ctagaaattt ctgatttcta gaaaaactat
      721 ggataataga agtactgatc atctccgtct aaatggaaat aagggtggat aagtctcttc
      781 aagctgaaac tagtgctgct aattccaact ctgccaaaac taacgatgca ttgtgttgcg
      841 gtcaatgcaa caatgatacg ttaatctttg atatgttgtc tagcgaatac gtttgcagca
      901 cttgtggctg tgtatccact gagcgacttt acaatggtga agacaactcg tattcttcta
      961 gaacaggata cagtgataga tcacggacgg ggatgccaga atcccttgct atacatcaca
     1021 agggactttc aactttgata ggcatgaatg atactgatgc tcgaggaaag gtacttgatc
     1081 ctattcagag agtgagcatt caaagattga ggacctggaa caatcgttca caactcaatg
     1141 attcaatttc cagaaacttg gaaaaggcat tgaaattcct aaacaatttt ggtgacaaat
     1201 tatatcttag tcaagcagtt atggaaagtg cagcatacat ttacagaaag gccgctgtta
     1261 aaaagctagc aaaaggaaga tcaaccttag gtttagtcgg ggcggcgata tacgcggctt
     1321 gtagggaaac tgcgaccccg aaaacagtct ccgatatagc atcagtttgt aatctaacta
     1381 gcaaagatgt catgtctcat tacaaattaa tattgcggga actctcgttg caaattccgg
     1441 tacttcatgg cactgattat gtaacgctca tagccaatcg attgaggctt tctgaaaaga
     1501 caaaaaggga cgctctgaga atatactcgc ttgtgcaaga caatggaatc tctattggaa
     1561 agaacccaag agctcttgca ggagctgtaa tatatcttgc atcccaaaat tgtaatgagt
     1621 ttctcagaca ggtggaaata tgccaagttg cagatatctc tacggtttct ttaagaaaaa
     1681 gatgcaaaga aatcaagtca gctgtgcata tttaacgcgt ttgcgctcag ttagcagttg
     1741 tttgttctat tatagaacca tttcgcaccg aggaaaacgg cagatatcta atggtgatct
     1801 cacttcatca taggaatcca tcttttagtt taaaaacccc aatctagggc attaattcac
     1861 tcatatatcg ttctgtcatg acatgtctac ggtgcttgca aatcaataaa tatgaactaa
     1921 ataggaatga aaaataatta cattgggaac ggcttactat ggaccctctt gataaagcta
     1981 tcttggtatc aatttattct tcaggatttg attcaggcat tacaccttat gactatttta
     2041 aaagtagaac agtggttccc gaagatctct tcaactctcg attgaagaaa ctgaacaaat
     2101 taggatttgt tgatcttact aatcctgttt cattatcatt tcttggcaga ggttcaatta
     2161 aggtagtgtt agt
//
LOCUS       DASSIK010000390         2168 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_982526, whole genome shotgun sequence.
ACCESSION   DASSIK010000390 DASSIK010000000
VERSION     DASSIK010000390.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2168)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2168)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2168
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_982526"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            340..1458
                     /locus_tag="VFI64_07200"
     CDS             340..1458
                     /locus_tag="VFI64_07200"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HET7243112.1"
                     /translation="MSHGANGFEIHNSLTIVRGYAICDMDNDFSNYMIDVINKGSLSI
                     MLSVGHRTKLFDILSALPPSSAKEIALKAKLNERYVREWLGAMVTGKIIEYDSVKDKF
                     WFTKEKSQYLTRENNIYNFAASMQWIPILSQVEDEIIECFKKGGGVPYSSYKRFHEVM
                     AEESYQTVVIGLIDHILPLVPNLVADLERGIRVLDIGCGKGKAVNLMAKHFPKSIFHG
                     YDLSKEAIDGATKEGKEMNNSNVFFKVQDILDLSLKNEFDLITAFDAIHDQPKPDLVL
                     KNINQSLSDKGVFLMQDILASTPLKDNISHPLGTFLYTISCMHCMSVSLSQNGAGLGA
                     MWGKEKALSMLKEAGFVNVQVKTLPHDFQNYYYCAYKD"
     gene            1554..>2168
                     /locus_tag="VFI64_07205"
     CDS             1554..>2168
                     /locus_tag="VFI64_07205"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HET7243113.1"
                     /translation="MIQNNKLLMIVLFTSVLSVGSVSILLNTVNAQEGQSFSATLSGS
                     DEVPPTESNSTGTAKFQVNENNSQVSYWVNITGIKKVNQAHIHNGTTGENGDIVVTLS
                     KGKSAKGNDRPPQIGFAGNITKDDLQGPLKDKDISDLVSLMSAGNAYVNVHTDKYPDG
                     AIRGQVTSGSASTDTSASTNENENANATTASTDTGAGANATSTPS"
BASE COUNT          745 a          392 c          426 g          605 t
ORIGIN      
        1 ggtcagccaa tgcagagctt atcatttgca agtttcacga ggcattggca cagatagaaa
       61 ctacaagtaa atctagagat cgggctagaa acggtatcaa ggcgtgatga tcgccagccg
      121 ttaacggaaa agaatgacgg actagcacag ctagtcaacc atagacactc gacagaagaa
      181 gactagctat aataagaaag tgcctatttt tcaaattgat agcacaacac cattaatcaa
      241 aacttgatga acatcaaact cttttctact atgtatacgc acaattaggt aattaccatt
      301 tacagtatcg ttgctctaca ggtatagaaa aagccataat tgtctcatgg cgcaaatggt
      361 ttcgaaatac ataatagttt gactatagta cgaggttatg cgatatgcga tatggataat
      421 gacttttcta actatatgat tgacgtaata aacaaaggtt ctttatctat catgttatcg
      481 gtagggcata ggacaaaatt atttgatata ctctcggcac tcccaccttc ttcagctaaa
      541 gaaattgcac taaaggcaaa actgaatgaa agatatgtcc gggaatggct aggagcgatg
      601 gtaactggaa agatcattga atatgattct gttaaagaca aattttggtt tacaaaagaa
      661 aagtcccaat atttgactcg agaaaataac atttataatt ttgcagcctc catgcagtgg
      721 attcctattt tatctcaagt ggaagatgaa attattgaat gttttaagaa gggtggaggt
      781 gttccctatt cttcatacaa acgatttcat gaagtaatgg ccgaggaaag ttatcaaaca
      841 gtagtaatcg gtttaattga tcacatctta cctctagttc ccaatcttgt tgctgatctt
      901 gaaaggggaa ttcgagttct tgatatagga tgtggcaaag gaaaagcagt caatcttatg
      961 gcaaagcatt ttccaaaaag tatctttcat ggatatgatc tctcaaagga ggctatcgac
     1021 ggtgccacaa aagaaggaaa agaaatgaat aattccaatg tttttttcaa agttcaagac
     1081 attttagatt taagtttaaa aaatgaattt gatctgatca cagcatttga tgcaatacac
     1141 gatcaaccta aaccagacct tgtgctaaaa aatatcaatc agtcactttc tgataaagga
     1201 gtttttctta tgcaggatat tcttgcttca actccattga aagacaatat ttcccatccg
     1261 ttaggaacgt ttctttacac catttcttgc atgcattgca tgagtgtttc attgtctcaa
     1321 aatggggcag gtctgggagc catgtgggga aaagaaaaag cactctcgat gttaaaggaa
     1381 gccggatttg ttaacgtaca agtaaaaaca ttaccacatg actttcaaaa ctattattat
     1441 tgtgcttaca aggattaatg cgataaatga tccatatagg taaatagatc atatagggaa
     1501 ccgtgcttga atttttaaaa agtcttataa atcatgaagc acactaagga ataatgatac
     1561 aaaataacaa acttctcatg atcgttctgt tcacttctgt cctgtctgtc ggttctgtat
     1621 ccattctttt gaatacagta aatgctcagg agggccaaag cttttctgcc acactctccg
     1681 gtagtgatga agttcctcca actgagtcaa attcaactgg aactgctaaa ttccaagtaa
     1741 atgaaaataa ttctcaagtc tcttactggg taaacattac tggaatcaag aaagtaaacc
     1801 aagctcacat tcataatgga acgacaggtg aaaatggaga tattgtagtc accctatcaa
     1861 agggaaaatc cgcgaaagga aatgatcgtc caccacagat agggtttgct ggaaatataa
     1921 caaaagatga cttgcaaggt ccgctcaagg acaaggatat ttctgaccta gtcagtctca
     1981 tgagtgccgg aaatgcctat gtaaacgtgc acacagacaa gtatcctgat ggagcgattc
     2041 gaggccaggt aactagtggt tcagcgagta cagacactag tgctagtaca aatgaaaatg
     2101 aaaatgcaaa cgcaactact gcaagtacag acacaggtgc cggtgcaaat gcaactagta
     2161 ctccctca
//
LOCUS       DASSIK010000391         2159 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_683113, whole genome shotgun sequence.
ACCESSION   DASSIK010000391 DASSIK010000000
VERSION     DASSIK010000391.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2159)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2159)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2159
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_683113"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            228..674
                     /locus_tag="VFI64_07210"
     CDS             228..674
                     /locus_tag="VFI64_07210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent transcriptional regulator"
                     /protein_id="HET7243114.1"
                     /translation="MNQEEELFVGTAELEHIEMYLKAIWHIREKKEQVKVSSIAKILN
                     VTQPSVVQMLHKLNDSKLVEYRKGNTIMEMTLEGEKIGERMIRNTRLLEVMMKESLKI
                     EIDEEMVCGIEHHMKDIFTDALCTLLKHPRKCPHDFDIPMGNCCKN"
     gene            785..1855
                     /locus_tag="VFI64_07215"
     CDS             785..1855
                     /locus_tag="VFI64_07215"
                     /inference="COORDINATES: protein motif:HMM:NF024753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-binding-like beta-propeller repeat protein"
                     /protein_id="HET7243115.1"
                     /translation="MFRGNSQRTGVSRSKPIIRPSLLWVTEVGPTIASPVFDRGSLYV
                     ATVTGRIFSLNILERMIRWNTNFGPLISSPLITDSLLIGGTFNGWVKGKKFGDNSIFA
                     ISRNDGHTMWDVKIAGDFFSSPCLVNEAIVIGSLDHKVYCIDLRGNMLWDHVTDGEVW
                     SSPSLDGEYIFVGSDDGNIYSLNIDGSLRWKTKLNGMIRSSSPCLSLEEKILFCGTHE
                     GGMYCLDSYTGSIKWSKEIPKPVLSSPTLIQNKVIFATSNNTVYCLDSGDGKRVWEFE
                     TGDKVWSSPSLVENDKMLFFGCLDSHIYGVNISLGKQEWKFPTMGMVDSSPCIADGHL
                     FMPSRDGLLYVFGLSPLPSYIR"
BASE COUNT          663 a          378 c          456 g          662 t
ORIGIN      
        1 catttgatac aaaatggctt catgaatttt accacgatat gcgacatgca gctggatttc
       61 cttgtcattg attagatata ttttatccag agtagtattg ctacgtcatt gtgattaaca
      121 cgatgtgaga tttcttcttt gttttcatac tcacggcttc acaaagatca aagcagaaat
      181 gaccttaatg atattctcta cgagaaccct aaggataggt ttttgacatg aatcaagaag
      241 aagaactttt cgttggtact gcggaattag agcacataga aatgtatctt aaggcgattt
      301 ggcatatacg tgagaagaag gaacaagtga aggttagctc catagccaag attcttaatg
      361 taacccaacc ttcggtggtt caaatgctac ataagctaaa cgattctaag ttggttgagt
      421 ataggaaagg caatacaata atggaaatga ctcttgaagg cgagaagata ggggagagaa
      481 tgatcaggaa tactagacta ttagaggtta tgatgaaaga gtcgttaaaa atcgagatcg
      541 acgaagaaat ggtgtgtgga atagagcatc acatgaaaga tattttcact gacgcgctat
      601 gtacactact taagcatcca cgaaaatgtc cccatgattt tgatattcca atggggaact
      661 gttgtaaaaa ctaatagatc aatattattc gaatctatgt ttctcccaaa ttttatgcta
      721 catatcaaat caacaaaaca gatagcttat gaaaaacata aatcttgatg tgcattcctg
      781 gccgatgttt agaggaaact cacagagaac aggagtctct agatctaagc ctataataag
      841 accatcgctt ctgtgggtaa cagaagtcgg acctaccatt gcctccccag tctttgatag
      901 aggcagtttg tatgttgcaa cagtaacagg aagaatattt tctttgaaca ttcttgagag
      961 gatgataaga tggaacacaa attttggccc tttgatttca tcaccgttaa ttacagattc
     1021 tctattaatt ggcggaacat tcaatggctg ggtcaaagga aaaaaatttg gggataatag
     1081 catttttgct attagtagaa atgatggaca tacgatgtgg gatgttaaaa ttgcaggaga
     1141 ttttttttcg tcaccctgtc tagtgaatga agctatagtt attggttccc tagatcataa
     1201 agtatattgt atagacttga gggggaacat gctctgggat catgtgactg atggcgaagt
     1261 ctggtcttca ccttctctgg atggggaata catattcgta ggctcagatg acggtaacat
     1321 ctattcctta aatatagatg gttctcttag atggaaaact aagctaaatg gaatgattag
     1381 atcatcctcg ccatgtttgt cactagagga gaagatatta ttttgtggta cccatgaagg
     1441 tggaatgtat tgtttagact catacacagg ttcaataaaa tggagtaaag aaattcccaa
     1501 accggtactt tcgtcaccga ccctgattca aaacaaagta atctttgcta cttccaacaa
     1561 tactgtatac tgtcttgatt ctggtgacgg taaaagggta tgggaatttg aaactgggga
     1621 taaggtgtgg tcgtcaccat ctttagtgga gaatgataaa atgcttttct ttggctgcct
     1681 tgattcccac atttacgggg taaacatcag tttaggaaaa caggagtgga aatttcctac
     1741 tatgggtatg gtcgattcct caccatgtat cgctgatggc catctattca tgccgtccag
     1801 ggatggatta ctatatgtct tcggcttatc acctttacct tcttacatac gctgacaatt
     1861 agtcttctca agcggatagg aaagcaatac gacttggtaa gtaaatttga tccatttcat
     1921 ttccgaggat ccctttctga tatatctggc atcgcattca ttggatattg aattaactat
     1981 tttgggaaat tcttagacca agtgtagaat agctttggat ggcttctttg gctcaaccgg
     2041 taatttgact agtaagtgat tccaaaaagc tatccacccc tttggtcttc tgtcgcaact
     2101 tggaattatc cgcgcaatct gaaccttgtt gatgtccagt acaggcattc ccctcaatt
//
LOCUS       DASSIK010000392         5055 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_683838, whole genome shotgun sequence.
ACCESSION   DASSIK010000392 DASSIK010000000
VERSION     DASSIK010000392.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5055)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5055)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5055
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_683838"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            83..802
                     /locus_tag="VFI64_07220"
     CDS             83..802
                     /locus_tag="VFI64_07220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243116.1"
                     /translation="MVELKSELLVMFVAMGLFSQALMINPVQSLIQSPEASDIISTKN
                     SEGFTLSFLASNADRKNPVVYSFAKPIPTNWQLVIQNNLTYSHYSNAKTIIKIQEPYP
                     SEKFIELGMFGGESARFWAAVNTKDSGYIRIYERDSDGWSRDQPIFVAHANNQGLTIT
                     NGKRIIIDRLSINDFVVGSISVYGKDRPEDPSNVIGGKISFNIIFGNPANSPLYYLPL
                     GVSIVMAGIIVTLLVKKKREA"
     gene            complement(768..1463)
                     /gene="nth"
                     /locus_tag="VFI64_07225"
     CDS             complement(768..1463)
                     /gene="nth"
                     /locus_tag="VFI64_07225"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0140078 - class I DNA-(apurinic or
                     apyrimidinic site) endonuclease activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HET7243117.1"
                     /translation="MVTNTNTILNLMRKTLQENKLTRLTALKNLQQQEQRDPFKILIG
                     TILSARTRDENTTRVLKYLFDKFRDIDGISKAELKDIRDSIHSIGFYNIKAKRIKQVV
                     QLLIEKFDSKVPSNLEELLTLPGVGRKTANCVLVYAFNQPAIPVDVHVHRISNRLGIV
                     NTRKVEETELELCNIIDKEMWIEVNDTFVTYGQNVCLPIKPKCNVCQLKKMCKFYKSN
                     VKVKPPSSSSREE"
     gene            complement(1555..2286)
                     /locus_tag="VFI64_07230"
     CDS             complement(1555..2286)
                     /locus_tag="VFI64_07230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HET7243118.1"
                     /translation="MGKRTLVRRRGRGGKQFRAIIVGKIAPSKYPNFKFPEKHFGSVV
                     DIVHERGRDAPLAKVRFDNKTVSYVPATDGIAVGNSIQIGYDIPAASNNILALESIPD
                     GTLICNMEKNIGDGGKLVKASGSSALVFSHSPQGVTVKLPSGKFITLSPNCKAMVGVV
                     AGAGRKEKPFLRAGNRAKYMKAKGKLYPTVRGIAQAAVYHPHGGGRHQHIGHPSSVGR
                     STPPGAKVGNIAPRKTGRARLKDRR"
     gene            2529..4697
                     /locus_tag="VFI64_07235"
     CDS             2529..4697
                     /locus_tag="VFI64_07235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDC48 family AAA ATPase"
                     /protein_id="HET7243119.1"
                     /translation="MSQNTLSLKVLEAYTRDVGRGVARIDYDSMDSLSASTGDVIEIR
                     GKRRTVAKCLPLYPSDEGKGIVRVDGLVRNNAGVAIGDTVIVRKIKAVPAEKVIVAPL
                     EAIPPIDERYLADALESVPLIKGDNVMVPYFGGRLTFQVIGVTPASDAVLVTQKTIFH
                     IAEKGETLRGVPQVTYEDIGGLKEEIQKVREMIELPLRHPEIFEKLGIEAPKGVLLYG
                     PPGTGKTLLAKAVANESNAHFISISGPEIMSKFYGESEARLREIFKEAKEKAPSIIFI
                     DEIDSIAPKREEVTGEVERRVVSQLLSLMDGLEARGKVIVIAATNRPNAIDPALRRPG
                     RFDREIEIKVPDKRGRLEILQIHTRNMPLDTDVEQDRVAAVTHGFVGADLEYLCKEAA
                     MKCLRRLLPELNLEDEKLSPEVLNKLIVTMADFENAVKEVMPSAMREVYLESPDVPWS
                     SIGGLEEVKRELQEAVEWPLRYPELYTKLGHSMPKGLLMHGPSGTGKTLLAKAVATES
                     EANFISVRGPELLSKWVGESERGIREIFRRARQAAPCVVFFDEIDSIAPTRGMGGDSM
                     VTERVVSQLLTELDGIQALSGVVVLAATNRADIIDPALLRPGRFDKIVFVPMPDKLAR
                     QKILEIHSKDKPLGPDVNLVRVAELTEGFSGADASSVANTAVSLVLHEYLAKYPTPEE
                     AAKHVSEAHVMMRHFEESVKKIKTQREGKPGEKVAVPYYR"
     gene            complement(4780..>5055)
                     /locus_tag="VFI64_07240"
     CDS             complement(4780..>5055)
                     /locus_tag="VFI64_07240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243120.1"
                     /translation="EDLDEVRTIFAPAKSFEGTIKEGLSKITINMPTDMQNTYSILST
                     VSYILSSSQIPLYNAFFSHDEITLILNVSDAAKAYEIIREELAGMRE"
BASE COUNT         1527 a          952 c         1080 g         1496 t
ORIGIN      
        1 aggccagaag tatcacaatt aataatttcg tctgatgatc catttgtaaa ggaataacta
       61 gtgtctagaa taattaatga tcttggtaga attgaaatca gaactccttg taatgtttgt
      121 tgctatgggt ttatttagtc aggcattgat gatcaaccct gttcaaagtc tcatacagtc
      181 tccggaagcc agcgacatta taagcacaaa gaatagtgaa ggttttactc tttctttttt
      241 ggcctctaat gccgacagaa agaatccagt agtatattca ttcgcaaaac ctattcctac
      301 taactggcag ttggtaattc agaataacct aacttattct cattacagta acgcaaaaac
      361 gataataaaa atccaagaac cttatccaag cgaaaaattc atagagctgg gtatgtttgg
      421 aggagaatct gccagattct gggcagcagt caacaccaaa gattctggtt acattagaat
      481 atatgaacgt gatagcgatg ggtggtcaag agatcagcca atatttgtag cacatgcaaa
      541 caatcagggc ctgaccatca caaacgggaa aagaattatc atagaccgac tctctattaa
      601 tgactttgtt gttggttcaa tatctgtata tggaaaggac aggccagaag atccttctaa
      661 tgtcattgga ggaaaaattt cattcaacat tatttttggt aatcctgcca attcgccatt
      721 atactatctt cctctgggag tgtcaatagt aatggcgggg attattgtta ctcttctcgt
      781 gaagaagaag agggaggctt aaccttaaca ttacttttgt aaaatttaca cattttttta
      841 agttggcata cattacactt tggtttaatt ggaagacata cattttgtcc ataagtaacg
      901 aaagtatcat ttacctcaat ccacatttct ttatcgatga tattgcataa ttccaattcg
      961 gtctcttcca cttttcttgt attcactatg cccaatctat ttgatatcct gtgcacatga
     1021 acatccacgg gaatggccgg ctggttgaaa gcatagacaa gaacacaatt tgcagtcttt
     1081 ctcccgactc ccggcaacgt cagtaattcc tccaaattag aaggtacttt actatcaaac
     1141 ttttcaatca gtaactgcac cacctgtttt attctctttg ccttgatgtt ataaaatcca
     1201 atactgtgaa tcgaatctct tatatctttt aactcggctt tggatattcc atcgatgtct
     1261 ctaaacttat cgaatagata tttcaagacc cgagttgtat tctcatctct agtacgtgca
     1321 gataatatag ttccaatcaa gattttgaaa gggtctcttt gctcttgttg ttgcaaattt
     1381 tttagtgctg tgagtctagt cagtttgttt tcttgaaggg tcttcctcat aagatttagg
     1441 attgtattag tatttgttac caatctaaca atcttggaaa taaaaaaggc tcgtattacg
     1501 gcaactcata cgtttccaca ataatagtac tggatgatat tgatctatta accctcatct
     1561 tctgtcttta agccttgctc gtccagtctt tctaggtgca atattgccca cttttgctcc
     1621 aggaggtgta cttcttccaa ctgaagacgg atgcccaatg tgttgatgtc ttccgccgcc
     1681 atggggatga tacacagctg cctgtgctat tcccctaact gtgggatata atttcccttt
     1741 tgccttcatg tatttagctc tatttcctgc tctgaggaat ggcttttctt ttcttcctgc
     1801 acctgctacc acgccaacca ttgccttaca attggggctg agagtaatga acttacccga
     1861 cgggagcttc accgtaacac cttgtggtga atgtgaaaaa accaatgccg aagagccgga
     1921 agcctttact agcttaccac catctccaat atttttttcc atattacaaa ttaaagttcc
     1981 atcaggtatc gattccagag ccaagatatt gttgcttgca gctggaatat catatcctat
     2041 ttggatgcta tttcctactg caataccgtc ggtggcagga acataactaa cagttttgtt
     2101 gtcgaaacgt acctttgcca acggggcatc cctacctctc tcatgaacga tatctacaac
     2161 agatccaaaa tgcttttcgg gaaacttgaa attgggatat ttagaaggtg caatctttcc
     2221 tactatgatg gctctaaatt gttttcctcc tcgtcctctt cttcgtacta gagttctttt
     2281 tcccaatgct cttcgttcaa tttgagaagt gtggtgattt taagcttttg ataaagtttt
     2341 tttgttattg agatattgag aaagtgcaga atctcaacgg aaatgatgaa ttaggaactt
     2401 tgaatactat ttcttggatc tgacagaagc cgcgcactat aatagtaaat tgggaagatt
     2461 tcactccttt ttcttgctat tattattcta acaaaggtat aaagataagt aaagtcgtaa
     2521 gtgatattgt gagtcagaat actctatcat tgaaggtact cgaagcttac actcgagatg
     2581 tgggccgcgg cgttgcccgt atcgattatg attctatgga ttctttgagt gcatctacag
     2641 gcgatgtgat tgaaattagg ggtaaacgta gaacagttgc gaaatgttta ccattatatc
     2701 catctgatga aggaaaaggg attgttagag tagacggttt agtcagaaat aatgccggag
     2761 ttgccatagg agatacagta attgttagaa aaattaaagc ggtccctgca gagaaagtaa
     2821 tagtcgctcc tttggaagct attccgccta tagatgagag ataccttgct gacgcacttg
     2881 agagtgtgcc tctgataaag ggtgacaacg taatggtacc ctactttggg ggaagactta
     2941 cgtttcaagt aattggagtt acaccagctt ctgatgcagt tttggtaact caaaaaacta
     3001 tttttcacat tgcagagaaa ggtgaaacgc ttagaggagt tcctcaggtt acgtatgaag
     3061 atattggtgg cctaaaggaa gaaattcaaa aagttcggga aatgatcgag ctacccctaa
     3121 gacatcctga aatatttgag aagttaggga tcgaagctcc aaaaggtgta ttgttgtacg
     3181 gtcccccggg gactgggaag acgttattag cgaaagcagt agctaacgaa agcaacgcac
     3241 atttcataag tatctcgggg ccagaaataa tgagcaaatt ctatggtgaa tccgaagcac
     3301 gcctcagaga aatctttaaa gaggcaaagg agaaagctcc ctcaatcata tttatagatg
     3361 aaattgattc tatcgctcca aaaagagaag aagttactgg agaagtagaa agaagagtag
     3421 tttcacaact tttgtcacta atggacggtc tagaagccag gggcaaagtg attgtcattg
     3481 cagccactaa cagaccaaat gcaattgacc cggctttacg tagacccggc agatttgata
     3541 gggaaataga aataaaggta cccgacaagc gaggacgatt agagatactt caaatccaca
     3601 ctagaaatat gcctctcgat acggatgtcg aacaagatcg agtggctgca gttacacacg
     3661 gatttgttgg agctgatttg gaatatttgt gtaaggaagc agccatgaaa tgtttaagac
     3721 gattattgcc agaactaaac ttagaggatg agaagctttc tccagaagta ttaaataaac
     3781 taatagtaac tatggcagat ttcgaaaatg ctgtgaagga agtgatgcca tcagctatgc
     3841 gagaagttta tttggaatct ccagatgttc cttggtcttc tataggcgga ctggaagagg
     3901 taaaacgaga attgcaagag gccgtagaat ggccattacg atatcctgag ctgtacacta
     3961 agttgggtca ttccatgcct aaaggattat taatgcacgg accatctggt acaggtaaaa
     4021 cacttcttgc aaaggccgtt gccacagaat cggaggcaaa tttcataagt gtaagaggtc
     4081 ctgaactttt aagcaagtgg gtcggagaat ccgaacgagg cataagggaa atattcagga
     4141 gggcaaggca ggctgctcct tgtgtagtat tttttgatga aattgattcg atagctccta
     4201 cgagaggaat gggtggagat agtatggtta ctgaaagggt agtatcacaa ttactaactg
     4261 aacttgacgg aatccaggca ctttctggcg tagtcgtttt agcggcaaca aatagggcag
     4321 atataataga tcccgctcta ttgaggcctg gtagatttga taaaatagta tttgttccaa
     4381 tgccagacaa gcttgcacga caaaagattt tggaaataca ctcaaaagat aagccgttag
     4441 gtccagatgt aaatttggta cgggttgcag aacttaccga aggattcagt ggagccgatg
     4501 caagttccgt agcgaacacc gctgtttctc tcgttttgca tgaatacttg gcaaaatacc
     4561 ctacaccaga agaagcagca aagcacgttt cggaggcaca tgtaatgatg cgtcattttg
     4621 aagagagtgt aaagaaaata aagactcaaa gagaggggaa accgggagag aaggtggcag
     4681 ttccgtatta caggtgaatc gagaatcaaa ttaccactta gtagctaatg aaaaaaaatc
     4741 agtagtgtcc caactgtgta tatggtacta gtcctaattt cactcccgca tgcctgctaa
     4801 ctcttctctg attatctcgt aggctttagc ggcgtcactg acattcagta tcagcgtaat
     4861 ttcatcatga gaaaagaaag cattgtacaa tgggatttgg ctgctagaaa ggatatagga
     4921 tactgtcgag aggatgctat atgtattctg catgtctgtg ggcatattaa tagtgatttt
     4981 cgataagcct tctttgattg tgccttcaaa acttttagcg ggagcaaaaa tcgtacgaac
     5041 ttcatcgagg tcctc
//
LOCUS       DASSIK010000393         2534 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1271175, whole genome shotgun sequence.
ACCESSION   DASSIK010000393 DASSIK010000000
VERSION     DASSIK010000393.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2534
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1271175"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            495..932
                     /locus_tag="VFI64_07245"
     CDS             495..932
                     /locus_tag="VFI64_07245"
                     /inference="COORDINATES: protein motif:HMM:NF020123.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HET7243121.1"
                     /translation="MRLVVFICNHCPYIKACINDLINLQNSFATSELEVVGINSNDSG
                     YPDEGFDNMVKFAEKYELNFPYLIDDTQTVARAYGGACTPDPFLFDHQKRLVFHGRIN
                     DATDPEAIPKIPITKNNVKKVLAGKTLKKDFDPSIGYSIKWRT"
     gene            complement(929..>2534)
                     /locus_tag="VFI64_07250"
     CDS             complement(929..>2534)
                     /locus_tag="VFI64_07250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="electron transfer flavoprotein"
                     /protein_id="HET7243122.1"
                     /translation="NKIFTLDLTPAHEYQTNFGYSVLLNKLNSWFASVASESAEKQGG
                     GIVTGVHVRDIQWSNENKTLIHTDELEEFQVKAIIAADGVNSEIAYLTGARQKFAPNE
                     VYQGVKVVIKLPEETIEERFEIDSSGGAAHLFAGDVTLNHIGGGFLYTNRDTLSLGAV
                     YHYESLFSKPTEPSTLVNALIQNPFVSELIKDEVITIDIDRELSKEEQLRKRFALTKL
                     VKTFEELRYSCYSSSGRARLIDSGKFKNFEEMKAKLDSIRQELIEKYNTKFVTNYVEL
                     EYSAKLVPDGKRCRMKKPYHRNILFVGDAAGRGIFIGPRIEGLNVGIDDAVRASLAIS
                     RSIDKNNFAEDYMGQYYTSLVEQSPYTRDMKEIDKEYLKIFLESTKSIPKEIVGSRYG
                     FIFKIMSSGKLRGLAVGIANLLGYEKILPLVESEETYVQVPIELASKLGKKLSSSYTP
                     VPPSVEERVARLRYNDDPISHIIVREPESEFLRKLVVLCPTRCYYQEDNKVMLQHEGC
                     IECGSCAKGTEWRHPRGEKGVIFSYG"
BASE COUNT          749 a          542 c          443 g          800 t
ORIGIN      
        1 aagaatattt tattataaaa ttattgactc aacgttagta tgcaacgtag gttacattga
       61 taggtaactc ttctctacta tgattctaaa agaacaaacc catattcttt gaagttctag
      121 caacttccat aatgaccgta ctcataagtt gtcaaaaatg gcaagaattt ttccgagatt
      181 ctcttactcg caagttaaat tgatacaaaa atacaggcat tcattatttg tgacacgtgt
      241 tactatgaaa agtagctggg agaaatcatt agcatgtgca gataagcaac ggacaaggaa
      301 aaaaaagcaa gtactggcca ctagagttta acgcataatt tttaggcaaa gcatgattta
      361 ataacctatt atccggagca tctttggcta aaacactttc aactcaagtt ttgaaaacta
      421 atgaaaaggc tccccacatt taagctaaaa gacgtagatg gtaaaatgta ttcacttgaa
      481 gatttcaatt gtaaatgcgc cttgttgttt tcatatgtaa ccattgtcca tacataaagg
      541 cgtgcattaa cgatctaata aatttgcaga atagttttgc tacatcagaa ttggaagtag
      601 taggaattaa cagcaatgat tctggctatc cagacgaggg attcgataat atggtcaagt
      661 tcgcagaaaa atatgagtta aactttccat acttaatcga tgatacacaa acggtcgcga
      721 gagcatatgg aggggcttgc acgcccgacc cattcttatt tgatcatcag aagaggctag
      781 tattccatgg aagaataaat gatgctactg atcctgaagc aattccaaaa attcccataa
      841 cgaaaaacaa cgtaaagaag gttcttgcgg gcaaaactct gaagaaggac ttcgatccgt
      901 ccataggata ctcaatcaag tggaggactt aaccataact aaatatcacg cctttttctc
      961 cccgtggatg cctccattcc gtacccttgg cacacgatcc acattctatg catccctcgt
     1021 gctgtaacat gaccttattg tcttcttggt agtaacatct tgtcgggcag agtacaacca
     1081 gctttcttaa gaattcgctt tctggctcac gtactattat atgggaaatt gggtcatcgt
     1141 tataccttaa cctggcaacc ctttcttcta ccgaaggtgg taccggggtg taggaagatg
     1201 aaagtttttt gcctagtttc gaagccaact ctatgggcac ctgtacatag gtttcctccg
     1261 attccactaa cggcaggatc ttttcgtatc ccaagagatt agctatacct accgctaatc
     1321 ctctcaattt tccacttgac atgattttga atatgaatcc atatctcgat ccaacgattt
     1381 cctttggtat actctttgtc gattcaagaa atatcttgag gtactcttta tctatttcct
     1441 tcatgtcgcg agtatatgga ctctgctcta ccagtgatgt atagtactgt cccatgtaat
     1501 cctcagcaaa gttattcttg tctatagatc gtgaaatagc aagcgaagcc cttacggcat
     1561 cgtcgattcc gacgttcaaa ccctcaatcc tgggtcctat gaatatgcct ctacctgcag
     1621 catcgcccac aaacaggatg tttctatgat atggtttctt catcctacat cgctttccat
     1681 caggaacaag ctttgcacta tattctaatt ccacataatt ggtaacgaat ttagtattat
     1741 atttttcaat aagctcctgc ctaatagaat ctagctttgc cttcatctct tcaaaattct
     1801 tgaattttcc ggaatctatt aaacgcgccc tgcctgaact agaataacat gaatatctaa
     1861 gttcttcaaa ggtctttacg agtttagtca gtgcaaaccg ttttcttaac tgttcttctt
     1921 ttgaaagttc tctatcgata tcaattgtaa ttacttcatc cttaattaat tcactaacaa
     1981 atggattttg aattaatgca ttgacgagag ttgatggttc tgtcggctta gaaaatagcg
     2041 attcgtagtg atatactgct ccaagggata gagtatccct gttagtataa aggaatcctc
     2101 cacctatgtg gtttagagtt acgtcaccag caaaaagatg agcggccccc ccagaggagt
     2161 ctatctcaaa cctttcttct atggtctcct caggtaattt tattacaact ttgactccct
     2221 gatacacttc atttggagca aatttttgtc tcgcaccagt caaatacgca atttcagaat
     2281 ttactccatc agcagcaatt atcgccttta cctggaattc ctctaactcg tctgtatgaa
     2341 ttagcgtttt attctcgtta gaccattgga tgtctcgaac atggacccct gttactattc
     2401 cgcctccttg tttttctgca ctttctgacg ccacacttgc aaaccacgaa ttcaatttgt
     2461 tcagtaatac tgaatatcca aagtttgtct gatattcgtg agcaggagta aggtccaatg
     2521 taaaaatctt gttc
//
LOCUS       DASSIK010000394         4078 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_684786, whole genome shotgun sequence.
ACCESSION   DASSIK010000394 DASSIK010000000
VERSION     DASSIK010000394.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4078)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4078)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4078
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_684786"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..586
                     /locus_tag="VFI64_07255"
     CDS             <1..586
                     /locus_tag="VFI64_07255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243123.1"
                     /translation="WLNEPPIAGDMNSVTVQVQKGPEAKLQPVFNALANVTSSIKYGT
                     LTKNLDFVPSETTDGLYEAKTIPSRSGSSYAVVLNGGVESQNINAEIALDNVESRQAY
                     SFPDSSTADTSSSGGNLGAKVQGVLSQLSNTVQNTQGGLDQVEKDLQSTKSSIGSFGT
                     DLSKTYFIALSSIGVGLAGIIIAAFSLSRKTKIQ"
     gene            complement(649..771)
                     /locus_tag="VFI64_07260"
     CDS             complement(649..771)
                     /locus_tag="VFI64_07260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243124.1"
                     /translation="MYILNDGYGFAPISGGSAFPVSNDGVENNTNLKAIRIIKE"
     gene            complement(818..2182)
                     /locus_tag="VFI64_07265"
     CDS             complement(818..2182)
                     /locus_tag="VFI64_07265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243125.1"
                     /translation="MLRCTKCDVVVEILLILNIATFVFFLPLEQKDNQNARGDGFAQE
                     TLPPFNLNGEKLLLYTKVNPSIIQAEDRQNRYLDIMVTDYDTEELVQNATYKIMIYKD
                     NRIIMEGKFHSELGPLKITIEPMDDNLKVTKFTSLSNGTWTTETGDITIQGPVFINPG
                     LYHLSITILGLGNTKDVMEVPSSGLVFDTWLSVADAKNNIVEYEGTKYNIAVISYYDL
                     IDGFSFIPPTKTILWTMPFDWNMSRIKHQNILVHEEVKVPSSLFNGSVSQYGASVNDI
                     PIFGRSLTIDPFSSQNNTIVHILINKQDISKFLNQGIINVNDRKMSFKLTLLQSAQLE
                     SSSELETENGAVSISLVTIPEKLTVGSKADLILRFNDPAASVPINADVTYGLKILAPD
                     GKPIVNQTSQTAIYNTTGKIQVTFPTKGIYQIVISIDGLAPIDSDTLDTSRNSIARGY
                     LLVE"
     gene            complement(2206..2427)
                     /locus_tag="VFI64_07270"
     CDS             complement(2206..2427)
                     /locus_tag="VFI64_07270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243126.1"
                     /translation="MLKKRAIKLSYKLISYPDISMSSFAASVVFLGLVNNSSVANAQI
                     SADYLVTDLERQLLLNWIHHKPNYQEYGT"
     gene            2549..3367
                     /locus_tag="VFI64_07275"
     CDS             2549..3367
                     /locus_tag="VFI64_07275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243127.1"
                     /translation="MSMRKLIITFLILSIVSSVAVSNPLNRAFAHTFSGDESATFLAL
                     LEMIKTEAHLAQQNLGTNVTLAHEHAEATTEHLDANQTKEISERNTRVSNELNDSLTA
                     LKDAFNSTSPPTASDIKDKVSNVDAILGEVLSVRIDKNQLNNVTVKASTINDLVGETL
                     EHYGEAVGHEDTNKSSESNSTTNASSSAVKIVNEAAYQTAQALSSRVIELYKDVNSKA
                     LNSTAAENAQSGLEMLKSDIDKKVPFDSLDKLIDSTISPALNSGYDLKLKLEEG"
     gene            3573..>4078
                     /locus_tag="VFI64_07280"
     CDS             3573..>4078
                     /locus_tag="VFI64_07280"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HET7243128.1"
                     /translation="MSLKMKRLELLRFGRYIPIVSLCILSISLISIPVFAQQMSFTAS
                     LSGQSLTPPVSTTATGTAKFNVDTQGNMSYQLDVKNIKGVIGAHISLQNGTDLAQVFN
                     PYVEIAGKSEIPTGEVNGQLSKGVLTTSDLSGTLEGKNITDLTNLMNNGSVYVVVRTQ
                     ANENGEIQG"
BASE COUNT         1310 a          767 c          809 g         1192 t
ORIGIN      
        1 atggttaaat gaaccaccaa tcgccggtga tatgaatagc gttaccgtac aggttcagaa
       61 agggcccgag gcaaaactcc aaccggtgtt taatgccttg gcaaatgtta cctcatccat
      121 aaagtacgga acattaacga aaaatttgga ctttgtacca tccgaaacta cggatggact
      181 gtatgaagct aagacgatcc cctcacggtc aggatcttct tatgctgtag ttctgaatgg
      241 gggcgtagaa agccaaaata taaatgcgga aatagctctt gacaacgtgg aaagcagaca
      301 agcatattca tttcctgata gcagtacagc ggatacaagt tcgtcagggg gtaacttggg
      361 agcaaaagta cagggagttc tgagtcaact gtccaatact gtacagaata cgcaaggtgg
      421 acttgaccaa gtggagaaag atctgcagag tacaaaatct tcaatcggta gttttggaac
      481 tgatttaagc aaaacatact tcatagcttt aagtagcata ggggtcgggt tagcagggat
      541 aattatagct gccttttctc tttcgcgaaa gacaaagatt caatgataat gaggcaaagg
      601 gactacaaat attaaaatta aaaactgaaa gtattgacag gtgacacgtt actcttttat
      661 tattctgatc gcctttagat tagtgttatt ttctacccca tcattgctaa cggggaatgc
      721 cgagccacca cttattgggg caaaaccata tccatcattg agtatataca tcagataaca
      781 tatacagcaa ctcactggag ttacaaagtc cattttacta ttctacaagt aagtatcccc
      841 ttgcgatact attgcgacta gtatcgagtg tgtctgaatc tatgggtgcc aaaccatcta
      901 tcgatatgac tatttgatat attcctttgg tagggaacgt aacttgaatt ttacctgtcg
      961 tattataaat ggccgtctga ctagtttgat ttacaattgg cttcccatct ggggctagaa
     1021 tttttagtcc atacgtgacg tctgcgttga ttgggacgct tgccgcagga tcattgaagc
     1081 gaagtatcaa atctgccttg gaaccaacag ttaatttttc tggaatcgta actagagata
     1141 ttgatactgc accgttctct gtttcaagtt cagaagagct ttctagctgg gcagattgca
     1201 agagtgtcaa cttaaacgac attttcctat cattaacgtt aattattcct tgattcagaa
     1261 atttcgaaat gtcttgtttg ttgatcaata tatgaacaat cgtattattc tgtgaagaaa
     1321 acggatctat tgtaagagat ctcccaaata ttggtatgtc attaacggaa gctccatatt
     1381 gcgaaacgga gccattaaaa agagagctag gaactttaac ttcttcatga actaaaatat
     1441 tttggtgttt tattctcgac atgttccaat caaacggcat tgtccataag atagtcttag
     1501 tgggaggaat gaaagaaaag ccgtctataa gatcatagta agaaataacg gcgatattgt
     1561 actttgtgcc ttcatattct acaatattat tttttgcgtc ggctacgctc agccaagtat
     1621 caaaaacgag cccacttgat ggaacttcca ttacatcttt ggtatttcct agacctaata
     1681 tggtaattga aaggtgatat aatcccggat taatgaatac tggtccttga attgtaatat
     1741 cccctgtctc cgtggtccaa gtgccgtttg aaagagaagt aaatttggtt accttaagat
     1801 tgtcatccat aggttcaatt gttattttca acggacctaa ttcagaatga aacttccctt
     1861 ccatgatgat cctgttatct ttatagatca taattttata agtggcattc tgaactagtt
     1921 cctctgtgtc ataatcagta accatgatgt ccaagtatcg attctgtctg tcttcagcct
     1981 ggataatact agggttcact ttagtataga ggagcaattt ttctccattt agattgaagg
     2041 gaggaagagt ttcttgagca aagccatcgc cacgtgcatt ttgattatcc ttctgttcta
     2101 gcggtaaaaa aaatacaaaa gtagcaatgt tcaagatcaa aagaatctct acaacaacat
     2161 cacattttgt acatctcaac atacttccta cgccaaccta tatagttacg taccgtattc
     2221 ttgataatta ggtttatgat gaatccaatt aagtagaagc tgcctttcga gatcggtaac
     2281 tagatagtca gcagaaatct gagcgttagc tactgaggag ttatttacta aaccaaggaa
     2341 gacaaccgaa gcggcaaatg atgacatcga tatatcggga tacgatatta gtttgtaact
     2401 gagttttata gcccgcttct ttaacaaaaa aatattagcc ttctgatttt taattggggt
     2461 tatatgagat ccttttcgat atgtgtacta taatctttcg atgtgtgtac cataaggctt
     2521 aaggatgggt gcatggtaat aaaataagat gtcaatgagg aaattaataa ttacctttct
     2581 aatactatcg atagtatcgt cagtcgcagt atcaaatcca ctcaataggg cttttgctca
     2641 cacattctct ggagatgaaa gtgctacatt tcttgcccta ttagagatga tcaaaactga
     2701 agcccatctt gctcagcaaa acctaggaac aaatgttacc ctcgctcatg aacatgctga
     2761 agctactact gagcatttag atgcaaatca gacaaaagag atatcagaaa ggaacacaag
     2821 ggtatctaat gaattgaacg attccctgac ggctcttaaa gatgcattta attctacgag
     2881 cccaccaaca gcttcggata tcaaagataa agttagcaat gtcgatgcaa ttttgggaga
     2941 agttttgagc gttcggattg ataagaatca actaaataat gtaaccgtaa aggcatcaac
     3001 aattaatgat ttggtaggag agaccctcga gcactatggt gaggcagtgg gacatgaaga
     3061 cacaaacaag agttcagaat ctaatagtac tactaatgca tcaagctcag ctgtgaagat
     3121 tgtaaatgaa gcagcatatc aaactgcgca ggctctttct tccagagtca ttgaactgta
     3181 taaggatgta aactcaaaag ctttaaactc aacagccgct gaaaatgctc aaagcggatt
     3241 agagatgttg aagagtgata tagacaaaaa agttccgttc gattcgttag acaaactaat
     3301 cgacagcact attagtcctg ctcttaattc aggatatgat ctcaagttga aactggaaga
     3361 aggctaatat ctcgggataa cctcgtatcc cgctatagta gggatgccca cgattccagg
     3421 cagtttagta cattgtctca agcatactac tatattttgt agctgccata ctattactaa
     3481 ttttatatag ttaccatcca gccgttcatt aagatagctt aacaacatta aacaaagaga
     3541 attatagatt taggcatata aaatagtctt aaatgtctct aaaaatgaaa cgattggagc
     3601 tgctccgctt tggaagatac atcccaatag tttccctctg tatattatcc atatctctaa
     3661 tatcaattcc agtgtttgcg caacaaatga gctttactgc tagtttgtcc ggccagagtc
     3721 taacaccgcc agtcagtact actgctacag ggactgccaa atttaatgta gatacccagg
     3781 ggaatatgtc ataccagtta gatgtaaaaa acattaaagg agtcatagga gctcatatta
     3841 gtcttcagaa cggaactgat cttgcccaag tattcaatcc atacgtcgag attgctggca
     3901 aatcagaaat tcctacagga gaggtaaatg gccaactatc aaaaggagtc ctgacaacta
     3961 gtgatctcag tggtactctg gaaggtaaaa acattacaga tctaaccaac ctaatgaata
     4021 atggctcagt ctacgttgtt gttcggacgc aagctaatga gaacggagag attcaggg
//
LOCUS       DASSIK010000395         2386 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_90312, whole genome shotgun sequence.
ACCESSION   DASSIK010000395 DASSIK010000000
VERSION     DASSIK010000395.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2386)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2386)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2386
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_90312"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..205)
                     /locus_tag="VFI64_07285"
     CDS             complement(<1..205)
                     /locus_tag="VFI64_07285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243129.1"
                     /translation="MNITTNLLNLTFVIASVLTVICASSLLTIFPSTMTAADNMMSEN
                     MTAADNMMSENMTAADNMMSENMT"
     gene            731..1603
                     /locus_tag="VFI64_07290"
     CDS             731..1603
                     /locus_tag="VFI64_07290"
                     /inference="COORDINATES: protein motif:HMM:NF014017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HET7243130.1"
                     /translation="MQFYIGTSGWSYSSWQGVFYPEKLEQKWWLPYYSQVFEYVEIDS
                     TFYQIPSKTMVKLWNARTSPKFRFSAKFPRVITHEKKFRNCQKELEMFYNAMEPLKNK
                     LLTLLIQFPPYLKIKEGLEALRQYDFFFDETYRYAIEVRHPSWFSDLAYNFFKNNNIS
                     LVWNQLDIIQTPPVVTSDFVYIRLIGDRSIHESDFGSIQRDRIQEMAKWAVRLKEVQK
                     YERNVKMGMVAANNHYAGFGPSTSNAFREMLGLNPVEWGIDKDLPTKVEFEEVRDHKK
                     RPVKQTSLSDFIPK"
BASE COUNT          838 a          381 c          431 g          736 t
ORIGIN      
        1 cagtcatgtt ttcagacatc atgttatctg cagcagtcat gttttcagac atcatgttat
       61 ctgcagcagt catgttttca gacatcatgt tatctgcagc agtcattgta ctgggaaata
      121 ttgttaatag agatgaggca cagataactg tgaggactga agctatcaca aaggtgagat
      181 ttaatagatt tgtcgtaata ttcatgctgt tataatggga gatttaagta ttaaactagg
      241 aggctataac actatgaaca atgcaattat ggatcatgtt tgtgggttct cttagctaca
      301 aaattaactt taatatcaac gcaggatata ttcaacagtc cagaaaatat tgaaacatcc
      361 tggtggcatt acataactat ccagatatat tagataaacc tgcctattgg aaaatcataa
      421 caaaatatgt caggggataa gaaatttcaa ttcaaatacc gtaaatagac gatcgatctg
      481 aattaaaatt caaacgaagt taactctaca atgcatataa tatcaatcat taaactatca
      541 ttttgaagtt tttatttcgg aaatgtcgct agttgacatg cttgatgtac catacaagtt
      601 tttttgttgt tgccgatctt tcaataaaaa aataataaat aatccctcga aataatacat
      661 gacacactca cactcacact cacaaacata acgaaaattt taactcagtg taatgtcttt
      721 tatacagtaa ttgcaattct atattgggac ttctggatgg agctactcat cctggcaagg
      781 tgtattctat ccagagaaac ttgagcaaaa gtggtggttg ccatattact ctcaagtttt
      841 tgaatatgta gagattgatt ctacctttta ccaaatacct tctaaaacca tggtcaagct
      901 ctggaacgcc agaacttcac cgaagttcag atttagtgcc aaatttccta gagtaataac
      961 gcatgagaag aagtttcgaa attgtcagaa agaactagaa atgttttata atgctatgga
     1021 accattgaaa aacaagctat taacattatt aattcagttt ccaccttatc ttaaaatcaa
     1081 agaaggattg gaagcactaa gacaatatga tttctttttc gatgaaactt ataggtatgc
     1141 catagaagtc aggcatcctt cttggttttc agatttagct tataatttct tcaagaataa
     1201 taatatcagt ctagtctgga atcagctaga tattatccag acacctccag tagtaacgag
     1261 tgattttgta tatataaggc ttataggaga tcgtagtatc catgaaagcg actttggaag
     1321 tattcaaaga gatagaatcc aagaaatggc caagtgggct gttaggttaa aagaggttca
     1381 gaaatatgaa cgaaatgtga aaatgggaat ggtggctgcg aacaatcatt atgcaggatt
     1441 tggaccttca acctcaaacg cgtttaggga gatgttaggt ttaaatccag ttgaatgggg
     1501 aattgataag gaccttccca caaaagtaga gtttgaagaa gttagagatc ataaaaagag
     1561 gcccgtcaaa caaacttctt tgtctgattt cattccaaag tgactatcat aacccagtaa
     1621 ccaagaatgg ttacgacaac taatttttcc cgattggaaa gaatctataa gaagagtttt
     1681 atagtacaat tgaagtacta gggatgacat gcaaaccaac atgagatgtc aactgtgtgg
     1741 caggagaaca catgaattgc tctattggtt cgataagatg gtttgtagta attgttaccg
     1801 cataagtcga gccagatcgg aacttattct ggaagcatct gctaataaat aaccttgcct
     1861 tttcatttta tttcctgatt gcctaaggtt ttctaagcta gcaagaatga tgccaattaa
     1921 gttaaaacct caggaaaatc aaatgagtat accaacaagt tccgtttatt ccaggaaatc
     1981 gaaaattcga tatataagaa tagtctagta ggatgacaaa atcaacaagg ccattcttct
     2041 gtttacgaat aatttagttg attcaataaa tttacgaaat caagtccacg ggaatcaaaa
     2101 taatttgaat tactttctga atcaacaaca atgtaattat ttagagactt gtaccacatt
     2161 atttatttat ctaaataatt ctattttgga ggtacaaatg aatttaagta taatttgcgc
     2221 tatattctca acatctgaag tttttatagc aataatgaga agttaattgc cagttgtgga
     2281 aattatgccg agaatcgatg tctgcaggga gcaaaatcat tactggagca catgtctttc
     2341 agatgtaaat gtttacgtta ccgataggaa aaacaataat atacag
//
LOCUS       DASSIK010000396         2412 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1273503, whole genome shotgun sequence.
ACCESSION   DASSIK010000396 DASSIK010000000
VERSION     DASSIK010000396.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2412)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2412)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2412
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1273503"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..225
                     /locus_tag="VFI64_07295"
     CDS             <1..225
                     /locus_tag="VFI64_07295"
                     /inference="COORDINATES: protein motif:HMM:NF037020.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol-disulfide isomerase"
                     /protein_id="HET7243131.1"
                     /translation="AGGTGNATVSEDGIKPGSQRNSNSTGGSDLNENGLFKIDGQRLY
                     NIADHADYGNHYIIIDAKGKGFQAYTFTFG"
     gene            complement(254..952)
                     /locus_tag="VFI64_07300"
     CDS             complement(254..952)
                     /locus_tag="VFI64_07300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243132.1"
                     /translation="MYLNTLPVTQAVRQVLLKNRVYSQVLEMGIANLTALAQHIKPEV
                     EMMVGSQVNTNTIVVAIKRLVDSIEQEKAIKKSYRAIPATNEVRMSLTDSVIDINCGL
                     LESQDISAVLDQFFEKKDFSFNLYHTAKQFRLFADNKDAYNFIDQAITKQFRHDKEKK
                     LSKITISFSTGQHENLNSLLFTISNIIYSTQIAIHSAFFTSSEIVLILEDRNATELYD
                     SLRKELTVRNPKLT"
     gene            1058..1588
                     /gene="hsp20"
                     /locus_tag="VFI64_07305"
     CDS             1058..1588
                     /gene="hsp20"
                     /locus_tag="VFI64_07305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaeal heat shock protein Hsp20"
                     /protein_id="HET7243133.1"
                     /translation="MWKEPWGFSTRIFEEMDKEFAELSRLFSGIQESGSSAGGRLPYY
                     YGYQVTVGPDGKPHVMEFGNVRPSSRGLVGQVAQTPSVREPLVDAILDEKQNTLVITA
                     EMPGITKEDIKIHLGEGVVTLHAEKGEKKYHKEIPVEYELDEHSAKAAYTNGIVELKI
                     KLKAPAKKKGRDVKIE"
     gene            1661..>2412
                     /locus_tag="VFI64_07310"
     CDS             1661..>2412
                     /locus_tag="VFI64_07310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HET7243134.1"
                     /translation="MTENKASLRVAETDPKFVGRGIALVDQRITADLDLKTGDVIEIT
                     GNRCKTHALLWSGQQSDSGKALIRIDGYTRSNLGIGIDDNVIVRKVSARKAEQIVLSP
                     GEDLNIIGLEEHLPDLLEGRVVTKGDSIPVNIMGRKIGFLVSSTTPSENASIVSGDTE
                     FVIGSVPKTVARGVPRVTYEDIGGLKNEIQKVREMIELPIRHPEIFERIGIEAPKGVL
                     LYGPPGTGKNMLAKAVASETNASFFSIGGPEI"
BASE COUNT          792 a          430 c          538 g          652 t
ORIGIN      
        1 gctggcggaa cggggaacgc cacagtttca gaagatggta tcaagccagg gtctcagcgg
       61 aactcaaatt caactggtgg gtctgatcta aatgaaaatg gactctttaa gatagacgga
      121 caaagactat acaacatagc agatcatgct gattatggaa atcattacat tatcattgat
      181 gcaaagggca agggttttca agcatataca tttacgtttg gctagagata caatcaatta
      241 gttaattcga atatcaagtc aattttggat ttcgaactgt taactctttc cttaacgaat
      301 cgtataactc tgtagcgttt ctatcttcta aaatcaacac tatttcactg gaagtaaaga
      361 atgcactgtg aattgctatt tgggtgctgt atatgatatt ggagatagtg aatagcaggc
      421 tgtttaggtt ttcgtgctga ccagtcgaga aggaaatagt aatcttcgaa agcttctttt
      481 ctttgtcatg acgaaattgc tttgtaattg cctggtcaat aaaattgtaa gcatctttat
      541 tgtctgcaaa caacctaaac tgttttgccg tatggtaaag attaaaacta aaatccttct
      601 tttcaaagaa ctggtctaat acagctgata tatcctgaga ttcaagcaga ccgcagttta
      661 tatcaatgac gctgtcggtt agtgacatcc taacttcatt ggttgcggga attgctcgat
      721 agctcttttt tatggctttt tcttgttcga tactgtctac cagcctcttg atcgccacga
      781 ctatagtgtt agtattcacc tgggaaccaa ccatcatttc cacctcgggt ttgatatgct
      841 gcgctaaggc agtcaagttg gcaataccca tctccaatac ctgagagtac actctattct
      901 ttagtaggac ctgtcttaca gcctgtgtca cgggtaacgt atttaagtac ataactctca
      961 tcacatgtat atattatgaa ctcaggtcat aaaaggatat cttcttcata gaaaaatata
     1021 tataatgtaa tacacattac ataatgttag atttaaaatg tggaaagaac catggggatt
     1081 cagtacaaga atctttgaag agatggataa ggaatttgca gagttgagta gattgttcag
     1141 cggtattcag gagtctggat catcagcagg tggcagattg ccatactatt atggatacca
     1201 agtaactgtc ggaccagatg gaaaaccgca tgtgatggaa tttggaaatg tcagaccatc
     1261 ctcaagagga ctagtcgggc aagtcgcaca aacaccttcc gtaagggaac cattagttga
     1321 cgccatactg gatgaaaagc aaaatactct agtaatcact gcagagatgc cgggaataac
     1381 taaagaggac ataaagatac acctcggaga aggagttgta actttacatg ctgagaaagg
     1441 cgagaaaaaa tatcataaag aaattccggt agagtatgag ttagatgaac attctgcaaa
     1501 ggctgcatac acaaatggca tagtggagct aaagataaaa ctaaaggctc cagcaaagaa
     1561 aaagggccga gacgtaaaga tagagtagtg gaccaagaag tagtccaaac catctcaaaa
     1621 ctttcttttt ttataatcat acattaaagg agaaaaaaat atgactgaaa ataaagcgtc
     1681 tttaagggtc gctgaaacag acccaaaatt tgttggtaga ggaatagcat tagtagacca
     1741 aaggataacg gccgaccttg atctcaagac tggggatgtg atagaaataa cgggcaacag
     1801 atgtaagaca catgcactgt tgtggtcagg tcaacaatct gattctggta aggcactgat
     1861 aaggatagac ggttatacgc gtagtaacct tgggataggc attgatgaca acgtaatagt
     1921 tagaaaggtg tctgcacgaa aagccgaaca gatagtactt tctccaggcg aagatttgaa
     1981 catcataggc ttggaagaac atcttcctga tcttctagaa ggtcgtgttg ttaccaaagg
     2041 tgattctatc cctgttaata tcatgggacg aaaaatcggg tttctagtta gtagtactac
     2101 tccatcagag aatgcctcta tagtatcagg cgatacggaa tttgtaatag gatctgttcc
     2161 aaaaacagta gccagaggag tgccgcgtgt tacttatgag gacataggcg gtctaaagaa
     2221 cgagattcaa aaggtaaggg aaatgataga gcttccaata cgacatcctg aaatatttga
     2281 gagaatagga atcgaggcgc caaaaggtgt gctgctctac ggtccaccag gcactggcaa
     2341 aaatatgtta gcgaaggcag tagcaagtga gaccaacgca agcttctttt ctatcggcgg
     2401 gccagaaata at
//
LOCUS       DASSIK010000397         2480 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1273778, whole genome shotgun sequence.
ACCESSION   DASSIK010000397 DASSIK010000000
VERSION     DASSIK010000397.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2480)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2480)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2480
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1273778"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..497
                     /locus_tag="VFI64_07315"
     CDS             <1..497
                     /locus_tag="VFI64_07315"
                     /inference="COORDINATES: protein motif:HMM:NF021883.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HET7243135.1"
                     /translation="ILRSLLSVAMENIPLWHERDLTNSANERFTFPMSFILIDEMLNT
                     MLRIFEGLKVNPQRIKENINKTKGQIYSEFLLEALVKKGIPRFSAYRDIQRIAFDALE
                     NEEDFQVIVMKDPSIMKNLTFAELKKIFNPSNHLSASERIITNVSNGVKKTISKLGSG
                     GKIK"
     gene            complement(490..1242)
                     /locus_tag="VFI64_07320"
     CDS             complement(490..1242)
                     /locus_tag="VFI64_07320"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase C-terminal domain-containing
                     protein"
                     /protein_id="HET7243136.1"
                     /translation="MLKTDLKNAIFESVRQSILNINTIGIAFSGGVDSALLASICRNL
                     EANAILLTVGFPNSHDIVYSKLISSKMNMVHLILEINYDDFLRTSRRIQKEISCKNRS
                     HVENCIAFYYVAKLASTYGIKAILTANGFDELFCGYNSYRLIFNQGDSYINKAITDKI
                     ANEFELMSEINQTIQAFNIQVKQPFLSEKFISVAMEIPVSHKIQGSTDFLRKHILRKI
                     ALSLDVPEDSVIHRKKAFQYGTLIHKNYKDII"
     gene            complement(1525..1872)
                     /locus_tag="VFI64_07325"
     CDS             complement(1525..1872)
                     /locus_tag="VFI64_07325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243137.1"
                     /translation="MNKNNQRIILAMLLIIVTIGSISTLPASAFTDTVKCKNNGDNNC
                     NNTTIVQKITINNNCNIINENKDHSDHNQNVNQLTCTNQYANIYGSLINAPIFNTIFG
                     NGNIMEDPFAPIT"
BASE COUNT          825 a          396 c          447 g          812 t
ORIGIN      
        1 gaattcttcg ttctttattg tctgttgcta tggaaaatat ccctttgtgg catgaaagag
       61 accttacaaa ttcagccaat gaacgattca catttccgat gtcgtttatt cttatagatg
      121 aaatgctcaa tactatgtta aggatatttg agggtctgaa agttaatcct caaagaatca
      181 aggaaaatat caataaaact aaggggcaga tctactcaga attcttactc gaggcgctcg
      241 taaaaaaggg gatcccaaga ttttctgcat atcgggatat tcaacggatt gcatttgatg
      301 ctctcgaaaa tgaagaagat ttccaagtta tagtaatgaa agatccttca atcatgaaga
      361 acctaacctt cgcagaatta aagaagattt ttaatccatc aaatcatttg tctgcttcag
      421 aaagaattat aacaaacgta tcgaacggag tgaagaagac tatttccaaa ttaggatctg
      481 ggggtaaaat taaatgatgt ccttgtaatt cttgtggatt aaagtgccgt attgaaaagc
      541 ctttttgcga tgtataactg aatcttcagg aacatcaagc gatagagcaa tttttcttaa
      601 aatatgcttt cgtaaaaaat cagtcgatcc ttgtatctta tgacttaccg gtatctccat
      661 tgcaactgaa atgaattttt cagaaaggaa aggttgctta acttgtatat taaaagcttg
      721 aatggtttgg tttatctcgc tcattagttc gaattcattt gcaatcttat ctgttatggc
      781 cttgttgata tatgaatctc cctgattaaa aatcagtctg taactattat atccgcaaaa
      841 gagctcatca aaaccatttg ccgttaagat ggccttaatt ccataggtgg aagctaattt
      901 ggcaacataa taaaatgcga tacaattttc aacatgagat ctgtttttac atgaaatttc
      961 cttttgaatt ctacgagagg ttctaaggaa atcatcgtag ttaatttcta gaatcaaatg
     1021 gaccatattc attttagatg atattaattt ggaatataca atatcatgag aatttggaaa
     1081 gcctacggtt agtaagattg catttgcttc aaggtttcgg catatacttg ctaataaggc
     1141 actgtcgacc ccaccagaaa aagcaattcc tatagtattg atgttcaaaa tactctgcct
     1201 tacgctttca aaaatggcgt tttttaaatc ggtcttcaac aatctagatc agattctttg
     1261 tgtacattta gtccttagag gccatataaa gaacatatgt agaacgctca ataagatcac
     1321 tctgaaatcc cttaattatg gcaacttgcg ataatccttc tgacaactaa gatccggaga
     1381 gtaaatattt gacatgaggg ggaattcccg agaccggata agactataat cgattaacta
     1441 aggaaataat aagtaacatt gaatattgaa ttcgaattta cctgctcata agaaattaca
     1501 ggaaaatagt aagattgatg aatattatgt aattggcgca aacggatctt ccattatatt
     1561 gccattacca aatatcgtat taaatatagg tgcgttaatc agtgatccgt agatgttggc
     1621 atattgattt gtacaggtta gctgattcac attttggtta tgatcactat ggtctttgtt
     1681 ttcattgatt atgttgcagt tgttattgat tgtaattttc tggacaattg ttgtgttgtt
     1741 gcagttatta tccccgttat ttttacattt tacggtatct gtaaacgcag atgcaggaag
     1801 agtactaata cttccaattg ttactattat tagtaacatg gccaatatta tccgttgatt
     1861 atttttattc attgataatt gccaatttgt tatcataagc atagtataag tagagtgtga
     1921 aatggtgaat aataagaaac aaagagattc agactaacta aggaactact gaatctaata
     1981 ctagagtttt agcatgagaa attattgtag agtctcactc cagaattgta cccaacttat
     2041 tacaataaaa ttgaaccctt ctctgacaaa gtgttgggtc gagcgaccaa attcggccca
     2101 caacttaatt tatctataaa cagtgattaa ctgtaatcaa aagattctta atgaatctag
     2161 tttcgtatct gtgcttattt tttgtatcat cggaatgcat gtcagaagta catagcaaaa
     2221 acgttcgcta aatattctac cattaatttt ggatttatga ctatgtaagg aatttgaaag
     2281 acgaaatgca acgccttaat atacctgtgg ctttctagaa gcaaaagatc tgtgaaatgt
     2341 ctgaagaggg tatcgcaagc caagtacttc aagaaaatgt tggtaagtcc gtactagtca
     2401 agttgaaagg cagaaagatt attcggggta agctcaaatc ctttgacaaa caaatgaacc
     2461 tattgctcca agaggcgata
//
LOCUS       DASSIK010000398         4764 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_380899, whole genome shotgun sequence.
ACCESSION   DASSIK010000398 DASSIK010000000
VERSION     DASSIK010000398.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4764)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4764)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4764
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_380899"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            438..842
                     /locus_tag="VFI64_07330"
     CDS             438..842
                     /locus_tag="VFI64_07330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243138.1"
                     /translation="MPIDYEFLYSFSEQLLRFEKSIRWIGIANKYGVLLNVEYRDNLT
                     PFMTEEENEEYAANAVKRYKTRLKFQTKIGMLNYAFGRYEKISRVTIPINQDYYLLLT
                     LDADEKNYDNLIMNKIIPFINKYKEKFILEEE"
     gene            complement(879..2231)
                     /locus_tag="VFI64_07335"
     CDS             complement(879..2231)
                     /locus_tag="VFI64_07335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HET7243139.1"
                     /translation="MAKIEFVIPSVLTKGAGEKKIPLEATNLEDAFTKISDQMGEDFK
                     RRVLDLNGKPRSLINIYINGKNMRFSSDGMATVLHENDSIYILPAVAGGSELKTEDLQ
                     RYSRQIMLDEIGFVGMEKIRKARVCVVGVGGIGNPVVTQLTAMGVGTIKIVDRDVVEI
                     SNLHRQHLYTEDDIGRVKVEAARERLRQINPSVEIEALPISVTRYNAEKIIDGFDIVV
                     DALDSIDARYALNDACIKLNIPLIYAGALGMLGSVCTIIPNESACLRCMFPALAEDDM
                     PTCSTEGVHPSILYLVGGIQVSEVVKIITGENPTLVNKLLYVDLNDLCLEKIQMYRHD
                     ECPSCGSKRKLEDSVLRQQLLIEELCGRDRGKRTYTVTPSEVSSPLSLLGVERNAEQL
                     GYKVKTRGKLGLTAISNGSEREQLSVSFMTSGAATIVGAKDQQDALSIYKRFVNGSNI
                     "
     gene            complement(2264..3490)
                     /gene="thrC"
                     /locus_tag="VFI64_07340"
     CDS             complement(2264..3490)
                     /gene="thrC"
                     /locus_tag="VFI64_07340"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HET7243140.1"
                     /translation="MGVIQSLKCRECSAEYEPQFRYICEECFGPLDVIYNFPSDLNKE
                     VFSSRQEKSYWRYFELLPISNKNNIINLHAGFTPLQEADELGKQIGGLKNLFIKNDSV
                     NPTFSFKDRPAGVAVSRAKETKLRAVGCASTGNLASATAAHAAKARLPCYIFAPSDIE
                     SPKISQALAYGAEFVAVQGTYDDANRVASIIGDSKGIGIVNINMRPYYVEGSKTLAFE
                     VAEQLNWQVPDHLIIPVGSGAMLNAICKGFEELHEFGFVEDISNLRITAAQPHGCAPI
                     VNAFKRHDSDIVPIERPETIAKSLAIGDPGDGMYVLRRLKQYRGVAEEATDAEIVDGI
                     LMLARTEGIFTEPAGGVSVAVLKKLVEDGIIERDEKVVCYVTGNGLKSPEAIADKLPK
                     LNIVKPDIQLVSAMIT"
     gene            complement(3672..4010)
                     /gene="hisI"
                     /locus_tag="VFI64_07345"
     CDS             complement(3672..4010)
                     /gene="hisI"
                     /locus_tag="VFI64_07345"
                     /EC_number="3.5.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004635 - phosphoribosyl-AMP
                     cyclohydrolase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-AMP cyclohydrolase"
                     /protein_id="HET7243141.1"
                     /translation="MMHGTKSPIELDFVKRKGLVPVIVQDLKTKDVLMLAYANKAALK
                     NTIETGKAWFWSTSNNRLWMKGEESGNIQLVREILVDCDSDALIYLVDSSNPACHTGK
                     RSCFHNKLVV"
     gene            4151..4600
                     /locus_tag="VFI64_07350"
     CDS             4151..4600
                     /locus_tag="VFI64_07350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243142.1"
                     /translation="MKGYYKTAISLLMISGLVLVGSQGLLYANHGQEIVISVNNAHFT
                     SLSGSGSHQVKVVANYSVSNSSMVGQKINAVMKVYSPNGTLLKTSSFPSGFTVNKTGT
                     QQLLTNLLNSTVQNITAVTTFTNLGKTLAMSNPLKVSLNLGQLTKGP"
BASE COUNT         1437 a          998 c          843 g         1486 t
ORIGIN      
        1 catgaaggag gtaatcaagg agtataaacc tgaaaatgat cagttggtaa aagttttgga
       61 ttatcatttc gaggtaatag attgtatgtg attatactct actcaaaacc ctacctttga
      121 gttcactctg gcatatggaa acagacgagg ttccttaatg aatggcaaat tgaagtggag
      181 taaaaataaa actgttactt aaattaatgc attcccctgt taggggtttg agggaaatac
      241 tttagatttt acttcattga taacaccaat gataacaaaa aaacgcgatt ttcatttaat
      301 tctttttcac ttacagttat tttcctcaca gatcttgcat tccatagttg ttatatcaaa
      361 caaaatggat gcacgtccat aatgtaaact agatatacct tttattacta cctacaacaa
      421 attgagagtg acggtaaatg cccatagatt atgagtttct ttactctttc agtgaacaac
      481 tacttcgttt tgagaaatct attagatgga ttggtatagc aaacaagtat ggggtcttgc
      541 tcaatgtcga atatcgtgat aatctaactc cattcatgac tgaggaagaa aatgaagaat
      601 atgcggctaa tgccgtaaaa aggtacaaga cgagattaaa atttcagaca aagattggaa
      661 tgttaaatta tgcctttggg agatatgaga agattagtag agtgaccatc cctataaatc
      721 aagattacta tttacttttg actcttgatg cggatgaaaa aaactatgac aatctaatta
      781 tgaacaagat aattccattc attaataaat ataaggaaaa atttatcctt gaagaggaat
      841 agggacagga agagcgctat caacttctta attcttcgtt atatgttcga tccgtttaca
      901 aatcttttgt aaatagagag tgcatcttgt tgatcttttg ccccaactat tgtagcagca
      961 ccacttgtca taaagcttac agataactgt tctcgttctg acccattact tatggccgtc
     1021 aaaccaagtt tgccccgagt ttttacttta taccctagct gttctgcatt tctttcgaca
     1081 cccaacaggc tgagaggaga tgacacctca gatggagtaa ctgtgtatgt tctcttgcct
     1141 ctgtctctac cacacagttc ttcaatcaaa agctgttgac gcagaacaga atcttccaat
     1201 tttctttttg atccacaaga cgggcattca tcgtgtcggt acatctgaat tttttccaag
     1261 cagagatcat tcaaatcaac atacagcaac ttattgacaa gtgttggatt ttctcccgta
     1321 atgatcttta ccacttcaga gacctgaatg cctccaacca agtacaatat ggatggatgt
     1381 acaccttccg tactgcatgt tggcatatca tcttctgcca atgctgggaa catacacctc
     1441 aagcatgcag attcatttgg tattatggta cagaccgatc ccaacatccc tagagcacca
     1501 gcgtaaatca gcggaatatt tagcttaata caagcatcat ttaatgcata acgtgcatca
     1561 atactgtcaa gtgcatccac aacgatatcg aaaccatcaa taattttctc agcattatat
     1621 ctagtaactg agataggaag tgcctcaatc tctacgcttg gattaatctg tcttaatcgt
     1681 tctcgagctg cctctacctt tactcgccct atatcgtcct cagtatagag atgctgacgg
     1741 tgaagattag aaatctcgac tacatctctg tcaacaatct ttattgttcc aacccccatt
     1801 gcggtaagtt gagtgacgac cggattacca attcctccaa caccgactac gcagaccctt
     1861 gccttccgaa ttttttccat tccaacaaat ccgatttcgt cgagcattat ttgcctcgaa
     1921 tatcgctgta aatcttcagt tttgagttct gaaccgccgg ctactgctgg aagaatgtag
     1981 attgaatcat tttcgtgaag aacggtagcc ataccatcac tgctaaatcg catattcttc
     2041 ccattgatgt agatgttaat tagagatcga ggttttccgt ttaaatctaa tactcttcgc
     2101 ttaaaatctt cacccatttg gtccgaaatc tttgtgaagg catcttcaag atttgttgct
     2161 tccagcggga tctttttctc tccagcgcct tttgtcagta ctgaaggaat tacaaattca
     2221 atttttgcca atctctgtca ccacatatga tgcatatcaa taactatgta atcattgccg
     2281 agaccaactg aatgtctggt tttacgatat tgagcttcgg gagtttgtct gctattgctt
     2341 ctggactctt taatccgttg ccggtaacgt agcaaactac tttttcatct cgttctatga
     2401 tcccatcttc gactaacttt ttaagtacgg ccactgaaac gccgcctgct ggctccgtaa
     2461 agatcccctc cgttctagca agcatcaaaa ttccatctac tatttcagca tctgtggctt
     2521 cttcagctac acctctgtac tgcttcaatc ttctcaatac atacatacca tcccctggat
     2581 cgcctatcgc taaactttta gctattgtct ctggtctttc aataggcaca atatcagaat
     2641 cgtgtctttt aaaagcatta actattggag cacagccatg aggttgtgcc gcagtaatgc
     2701 gcaagttaga gatgtcctct acaaaaccaa attcatgtag ctcctcaaat cccttacaga
     2761 tagcatttaa catagctccg cttcctacgg ggattatcaa atgatccgga acttgccagt
     2821 tgagttgttc tgccacttcg aaagcaagtg tttttgaacc ttcgacgtag tatggccgca
     2881 tattaatatt tacaattccg ataccctttg aatccccaat tattgaggct accctgtttg
     2941 cgtcatcata agttccttgt actgcaacaa actccgcacc atatgctaga gcttgtgata
     3001 tcttagggct ctcaatatca gagggagcaa aaatataaca aggcaaacga gcctttgcag
     3061 cgtgagctgc agttgcagaa gctagattgc cggtggatgc acatcctact gctcttaatt
     3121 tagtttcttt tgccctagaa acagccacac ctgctggtct atccttaaat gaaaatgttg
     3181 gattgactga gtcatttttg atgaataaat tcttcagtcc gccaatttgc ttgccaagtt
     3241 cgtctgcctc ttgcaggggt gtaaagcctg catgaagatt gatgatgtta ttcttgttag
     3301 aaataggcaa gagttcgaaa taacgccaat acgacttctc ctgcctagat gaaaaaactt
     3361 ccttattcaa atcagaagga aaattgtata taacatcaag aggcccaaaa cactcttcac
     3421 atatgtatct aaattgtggt tcgtactctg cagaacattc tctgcacttt aaagattgga
     3481 ttactcccat agttaacgat caacattctt gtatcgtgat aaataagagt ctctaatagg
     3541 aaattaagta atacttaact tttagaagtc aaaatatgta tactactgaa taacaatctt
     3601 gagtgaaaat atctacttat atttataaac tcataattat tacaaaattt gtagttgaaa
     3661 atcagaaaat ctcatactac caacttgttg tgaaagcagg atcgtttccc cgtgtgacaa
     3721 gcaggattgc tggagtcaac cagataaata agtgcgtctg aatcacaatc tacaagtatc
     3781 tctctaacta gctgaatatt tccggactcc tcgcctttca tccacaatct attattcgaa
     3841 gtactccaga accaggcttt gcctgtctca atcgtatttt tgagagctgc tttatttgca
     3901 taggcgagca tcagaacatc ctttgtcttt agatcttgaa ctatcacggg aactaatcct
     3961 ttccgtttta caaaatcaag ttcaattggc gacttagtcc catgcatcat tgatgactat
     4021 aagtgatgct gagtagaaaa taattctatt ggttatagaa aatttgagaa tcgaatctaa
     4081 tacgcataaa taaggataat tcggatatat caagtcaaat ggcatgcgta tttatggaga
     4141 ataatttggc atgaagggat attacaaaac tgcgatatca cttctaatga ttagtggctt
     4201 ggttttggta ggtagccaag ggctcctgta tgcgaaccat ggacaggaga ttgttatatc
     4261 tgtgaataat gcccatttta cttccctctc tggaagcggc agtcatcaag ttaaagttgt
     4321 agctaattac tctgtatcca actcttcgat ggtaggtcag aagatcaatg ctgttatgaa
     4381 ggtatattca ccaaatggaa cattattgaa gacctcatcg tttccatctg gatttacagt
     4441 caacaagaca ggtacccagc aacttttaac caacttactg aattcaacag ttcagaatat
     4501 aacggctgtg accactttta cgaacttggg caagacgctg gcaatgtcca accccctaaa
     4561 ggtctctctc aatttaggac aattgacaaa gggcccataa atagtcaata acgatatgtc
     4621 atcctaccga tgtcaaatat cgtagctaat gtgatataat tagatcaata atgtagacgt
     4681 gaatgctcaa tgtaatttct gtcatcatca gcaagaatta attctctatg acacttttcg
     4741 catacgaagt acttggcatc ggac
//
LOCUS       DASSIK010000399         3327 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_381338, whole genome shotgun sequence.
ACCESSION   DASSIK010000399 DASSIK010000000
VERSION     DASSIK010000399.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3327)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3327)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3327
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_381338"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..383)
                     /locus_tag="VFI64_07355"
     CDS             complement(<1..383)
                     /locus_tag="VFI64_07355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243143.1"
                     /translation="MNKDENSISDIQISLSKDSVMTSELLTLDLRFKIVGKIREVFDQ
                     KNWERAYDKHDNSFRVTIQLEVRSGRRTVLATKFVRKASLFWTRNPKIPYRIWATIIK
                     DEGTLIPSSTEEARSLLFNIDKSIE"
     gene            436..729
                     /locus_tag="VFI64_07360"
     CDS             436..729
                     /locus_tag="VFI64_07360"
                     /inference="COORDINATES: protein motif:HMM:NF025040.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RpoL/Rpb11 RNA polymerase subunit family
                     protein"
                     /protein_id="HET7243144.1"
                     /translation="MLVEIEQDDHRAIELKIKEEDISVMYIIQHEILKDKNTEFAGVV
                     LKHALIRDYVMRIISKSGSSMSILHKSLESAANSLEELKGMLSAEFKKEEVAN"
     gene            731..1069
                     /locus_tag="VFI64_07365"
     CDS             731..1069
                     /locus_tag="VFI64_07365"
                     /inference="COORDINATES: protein motif:HMM:TIGR01384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription factor S"
                     /protein_id="HET7243145.1"
                     /translation="MKFCPTCETRMKSRHEENVLLCPKCGFSTNREEVEIGISSTATS
                     NFDHGSGSVLKVLDTDKAPDALPTTSTDCPKCGNNLAFWWMLQTRSADEATTQFYRCT
                     KCNHTWRNYS"
     gene            1392..2144
                     /gene="pcn"
                     /locus_tag="VFI64_07370"
     CDS             1392..2144
                     /gene="pcn"
                     /locus_tag="VFI64_07370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030337 - DNA polymerase processivity
                     factor activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proliferating cell nuclear antigen (pcna)"
                     /protein_id="HET7243146.1"
                     /translation="MVFIAKTKSPDEWKAVTSAISTLVDEATFEATTEGLSFRGMDPS
                     HVALIDISWPNSAFDAYESDSALKFGVRIDEFSKLIKRADKKDLVEISIGDDSMLHVR
                     ISNGYVRGYKMRLIESTASSTPLPKLTFNSKVVMSPAAFDKILSDVQVFSEYITIDSE
                     KNKVSFFGKGDSGEVDIVLESDSEGLEELNVTENSKATYSLDYLSKITKAISASGGSV
                     IAEFSTKMPLRLEFRVANVGRIHFYLAPRVQD"
     gene            2295..2984
                     /locus_tag="VFI64_07375"
     CDS             2295..2984
                     /locus_tag="VFI64_07375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020267033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HET7243147.1"
                     /translation="MICVDEKEGKSLDDVAGDVIQCSKCPRLSLYIRQVGETKVKRFV
                     NEEYWSKPVPGFGDNDAEVVIVGLAPAAHGGNRTGRMFTGDSSGEWLMKALFDTGYAN
                     MPASISKHDGLILKNVYITSIVKCAPPSNKPSSSEISNCSGYLKAELALLERNTSVII
                     ALGRIAFKTVCDFYGLKGLEFRHGACYEFGKKYLLVSYHPSRQNTNTKKLSWEMWIGI
                     FRKANSLMRSF"
BASE COUNT         1018 a          586 c          711 g         1012 t
ORIGIN      
        1 aattcaatac ttttatcgat attgaacagc aacgatctgg cttcttctgt acttgaagga
       61 attagcgtgc cctcatcttt tatgattgtc gcccaaattc tgtaaggtat ctttggatta
      121 cgtgtccaaa aaagcgatgc cttccttaca aatttagtgg ccaatacggt tcttctccct
      181 gatcgcactt cgagctgaat ggtcactcta aaagaattat catgcttgtc ataagctctc
      241 tcccaattct tttgatcaaa cacttctctt attttgccta ctattttgaa tcttaaatcc
      301 agcgttaaca gttcactggt cataacacta tcttttgaca gagaaatttg tatatcagaa
      361 atggaattct catctttatt caagaatcat catgaatggt atcatttata tcctcaataa
      421 gtagttgtct ctataatgct cgtggagata gaacaagatg atcatcgggc gattgaacta
      481 aaaataaaag aagaagacat ctcagttatg tatattatcc agcatgaaat tttgaaggat
      541 aagaacaccg aattcgctgg agtggtttta aaacacgcac tgattaggga ctacgttatg
      601 aggatcatat caaagagtgg ttcatcaatg agcatcttac acaaatcact ggaatcagcc
      661 gcgaattctt tggaagagct caaaggaatg ttaagcgcag agttcaaaaa ggaagaggtg
      721 gctaattaag ctgaaattct gtccaacttg tgaaactagg atgaaatcta gacatgaaga
      781 gaatgttttg ttatgtccca agtgtggctt ctcgacaaac agggaggaag tagagattgg
      841 tatatcttcg acagcaactt cgaactttga tcacggctca ggaagcgttc tcaaagtact
      901 tgatacggac aaagctcctg atgcattgcc cactactagt actgattgtc ccaagtgtgg
      961 gaacaatctt gcgttttggt ggatgctgca aacaagatct gcagacgaag ccaccactca
     1021 attttataga tgtactaaat gtaaccacac ttggcgaaac tattcataat aaaataaata
     1081 actaaattaa aacaatcgtt catagtatgc tttgcatttg tattgttctg tgttcttaat
     1141 actctggttt ggcgtcgcgt tgagttgagt tgagtttagt ttatatgcga gtaggcgaag
     1201 tgggctttca gtccgtactt tgtaattcat tcagtaatat tttagagaat atggttggta
     1261 cacttttatg gctaccattg ccggagtatt gggcttcttc cctaaagttt cggactgcct
     1321 agctgaatga ctgatctgac acttagagga atgcttaata tctctctctt gctcccaaat
     1381 aatcgataca tttggttttc attgccaaaa cgaagtctcc agatgaatgg aaagccgtga
     1441 cttctgctat ttccacactt gtggatgagg ctacgtttga agcaactaca gaaggtctct
     1501 ccttcagggg aatggatcct tctcatgtgg ctttaattga tatcagttgg cctaactctg
     1561 cttttgatgc atacgagtct gactctgcac ttaagttcgg cgtcaggatc gatgaatttt
     1621 caaagttaat aaaaagagcg gacaagaaag acctagtaga aattagtatt ggggatgata
     1681 gcatgttgca tgtgaggatt tcaaatggct acgtccgggg atataaaatg aggctgatag
     1741 aaagtactgc aagttctacc ccactaccca agttaacttt caattctaaa gtggtaatga
     1801 gccctgctgc ttttgataaa attctttctg acgtgcaagt gttttcagaa tatattacta
     1861 ttgactcgga aaagaacaag gtatcatttt ttggtaaagg tgattcaggt gaggtcgata
     1921 tagtactaga atcggacagc gaaggattgg aggaacttaa cgtaacagaa aatagtaaag
     1981 cgacgtacag ccttgactat ctttcaaaaa taacaaaagc aattagtgca agcggtgggt
     2041 cagtgatcgc ggaattttct actaaaatgc cattgagact cgaatttaga gtggcgaatg
     2101 tgggccgtat tcatttctat cttgcaccgc gtgtacaaga ctgaactaag gtcaaggaga
     2161 attatattat attaaattat gatttcaagc cattatgctt ctgggaaatc aaattttcgc
     2221 attccttagt cgcaattctt tatctggtat cataattttc ttaaaataac cgattcatat
     2281 tttcataagt tgctgtgatc tgcgtggatg aaaaggaagg taaatcactg gacgatgttg
     2341 ctggggacgt aatacaatgt tcaaagtgtc cacgactttc attatatatt cgccaagttg
     2401 gcgaaactaa agtcaaaaga tttgtaaacg aagaatattg gtccaaaccc gtaccgggtt
     2461 ttggcgacaa cgatgctgag gtagtcatcg tgggtctcgc tccggctgct cacggcggga
     2521 acagaactgg aagaatgttc accggtgata gctctggtga atggttgatg aaggcattgt
     2581 ttgatacagg ctatgccaat atgccagcca gcatttcaaa gcatgatggt cttattttaa
     2641 aaaacgtgta tattacttca atagtcaagt gtgctccccc ttcaaataag cctagcagct
     2701 ctgagatttc aaactgttct gggtatctga aagcagagct tgccttactt gaaagaaata
     2761 ctagcgtgat tatcgcactg ggaagaattg cattcaaaac ggtctgtgat ttttacggat
     2821 taaagggctt ggaatttcgg catggggcat gctatgaatt tggcaagaaa tacctacttg
     2881 tctcatatca tccgagtaga cagaatacca acacgaagaa actaagctgg gagatgtgga
     2941 ttggcatttt taggaaagcg aattctctta tgaggtcttt ctagctcgat taatggatac
     3001 atttgccatg cgagcactgt ttgctgataa gtgtctctgt acattagctt ttgcgataaa
     3061 taattgattg agtagcgagc ttcacaattg aatggaagaa tggtttagtg atatggaaat
     3121 ttcaatcaaa aacgcggggt tggatggggc tccaaagcgt acagaaaaga acaagtttaa
     3181 aaaaaagaaa aacttttgac tctcaataat ctagcatgat atagtttgta aattgtagta
     3241 tctaccagta ttactgctag atataatgta tagactatta gtaaagtcat caaaataagc
     3301 taaatcaagg atgcctattt ggtgtga
//
LOCUS       DASSIK010000400         2619 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_93976, whole genome shotgun sequence.
ACCESSION   DASSIK010000400 DASSIK010000000
VERSION     DASSIK010000400.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2619)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2619)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2619
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_93976"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(66..485)
                     /locus_tag="VFI64_07380"
     CDS             complement(66..485)
                     /locus_tag="VFI64_07380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243148.1"
                     /translation="MVKWKYNMAISRLAITVGIGILVTVFVYFGLRDSLNHPSIIRTS
                     IPPEMALNIVRNAFNISQADSVNLKTNYVYLKPNGEVYQLDSETNRIGEFLDKTEPTI
                     TGGSHYALQIKDIRDNKSYYVDYVTGEIVSSSNPHTK"
     gene            complement(626..2014)
                     /locus_tag="VFI64_07385"
     CDS             complement(626..2014)
                     /locus_tag="VFI64_07385"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HET7243149.1"
                     /translation="MSSYRKDTDSLGEVQVPASAYYGPFTVRASSQYNVTGQRSHINM
                     IKAFAMIKRSAALANKDLGVLEAQKADAIVKASDEILSGKLVDQFIIDAINSGAGTAV
                     NMNANEVIANRALEILDKKKGDYLTLSPNDHVNMSQSSNDTYPTAMHIAILLNLQEVK
                     TALTTLTSSLEKKAEEFKEVIKIGRTHLMDAIPVTLGSEFSEYAFSLRRGLEKIDQSC
                     SELEYVALGGTAVGTGANAPRGFKELALKYLAQTSGLNLRPSKNAFFSLQSKFEVAMC
                     SSTLRNVAIELSKIANDTRLMASGPFAGLAEILIPAVHAGSSIMPGKVNPSLSECLNM
                     ICFNIMGNDVSVAFAAQAGQFELNVMLPGMTRAVLDSTDMLKNFLPIYAKNMIDGIKA
                     NEQKLESYVQKSPILVTLLNPFIGYMKAAEVYKESLATNKSIRQIVLEKGLMTEEELN
                     KALSKESILGTH"
BASE COUNT          761 a          517 c          487 g          854 t
ORIGIN      
        1 tatcagtgat ataatttgat tgctctgtca ggaactatca tttattatcg attattcttc
       61 tgactttatt ttgtatgggg attgctggaa gatacaatct cgcctgttac atagtcaacg
      121 taatacgact tgttgtcgcg gatatcttta atctgtaatg cgtaatgact tccacctgtt
      181 attgttggct ccgttttgtc caagaattct cctattctat tagtctcaga atccagttga
      241 tacacttcgc cattgggctt taaataaaca taatttgtct ttagattaac tgaatctgcc
      301 tgtgaaatat taaatgcatt tctaactata ttcagagcca tctctggtgg aatagaagta
      361 cgaataattg aaggatgatt gagagagtcg cgcagcccaa aataaacaaa aacagttaca
      421 agaataccaa tgcccactgt aattgccaag cgtgatattg ccatgttata tttccacttt
      481 accattatgg ttagctttca tttatcttgt gtcgcgagaa aagaaaagaa aagaaaaaaa
      541 gtaagcccct gaaattgtta ttaaatacat attagctctc taacatggga aacactcttt
      601 ttaaattgtt cgtcatcaat tcactttaat gcgtccccaa aatactttct ttagataagg
      661 ccttgttcaa ttcttcttca gtcatcaacc ccttctctaa aacaatttgc cttatgcttt
      721 tatttgtagc taaagattct ttgtatacct cggcagcctt catgtaacct atgaagggat
      781 taagaagggt aacaagaatt gggctttttt gaacataaga ttccagcttt tgttcatttg
      841 cttttattcc atcaatcata ttttttgcat atatgggaag gaaattcttt aacatgtcag
      901 tagaatcaag tactgctcta gtcattccag gtaacattac gttaagttca aactgtcctg
      961 cctgtgctgc aaatgccaca gagacatcat tgcccatgat attgaaacat atcatgttaa
     1021 ggcattctga caacgatgga ttgacctttc caggcattat tgacgaccct gcatgtaccg
     1081 caggaattaa aatttcggca agacctgcga agggtcctga ggccatcaaa cgtgtgtcat
     1141 ttgcaatttt acttaactca attgcgacat ttctcagagt tgaagaacac atggcaactt
     1201 caaacttgct ttgaagtgaa aagaatgcat tttttgaagg tcttaaattt aaaccagacg
     1261 tctgggctaa gtatttcaaa gcaagttctt taaacccacg gggtgcgttg gcaccggtcc
     1321 ctacagccgt tcccccaagt gctacgtact ctagctccga acatgattga tcaattttct
     1381 ccaatcccct tctgagagag aaggcatact ctgaaaattc ggaaccgagt gtgactggta
     1441 ttgcatccat caaatgtgtt cttcctattt ttattacctc cttgaattcc tcagccttct
     1501 tctcaagaga cgaagttaat gttgttaagg cagttttaac ttcttgaagg tttagaagta
     1561 ttgcaatgtg catagcagtc ggatacgtat cattgcttga ttgtgacata ttcacgtgat
     1621 catttgggct taaagtcaga taatctccct ttttcttatc aagaatttcc agggccctat
     1681 tagcaatcac ctcgttggca ttcatattga cagctgttcc tgcgccagaa tttatggcgt
     1741 ctatgataaa ctggtccacg agtttgccag acaaaatctc gtctgaagct ttgactatcg
     1801 cgtccgcttt ttgcgcttct agcactccaa gatctttgtt cgcaagggcg gcagatcttt
     1861 tgatcattgc aaaggccttt atcatgttaa tatgagaacg ctgtcctgtt acattatatt
     1921 gcgaagaggc gcgaactgtg aatggaccgt aataagcaga agcaggaact tgaacttctc
     1981 caagggaatc agtatccttt ctgtacgaac tcatgacaaa cgtaggacca tgaatggtaa
     2041 taaatcaatc gacatttgtt caacaaatga tgtatgtttt gcttttgcta tcgtctgacg
     2101 acaaaacaat gaaaatagca tcttatctca tttgggccca ggatattctg cagcacccaa
     2161 taccttcttg gcgaaacaaa gccaagtgaa attcatggtt gcataatgat aagttcgtca
     2221 ggatagcggt gaacgtggtt ctgtcaatct atcgcgcgta taatgtctgc agctcatata
     2281 ggattttgaa ggatatagtc ctggtgataa tgtgcccaga agattagatt cctttgcatc
     2341 taagttgtga cttccctttt ggtgttcgct catagtagtt acatttgaca tagaaaatat
     2401 gattgtcctt acatgatagt aacatatgtc tctgctgcac ttgataagtt gaataatatc
     2461 ttctacagga tttgtgaaat tcatagagga tgcaatctat gacaaattga tattgcttac
     2521 gccattagtc caaaacaata ttaaaagtta ctagtcttga tcttggtaaa gttaggaacc
     2581 caataactta acttttcgaa atatcctgat tgtccaaag
//
LOCUS       DASSIK010000401         2147 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1275872, whole genome shotgun sequence.
ACCESSION   DASSIK010000401 DASSIK010000000
VERSION     DASSIK010000401.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2147
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1275872"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(281..1204)
                     /locus_tag="VFI64_07390"
     CDS             complement(281..1204)
                     /locus_tag="VFI64_07390"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family cysteine hydrolase"
                     /protein_id="HET7243150.1"
                     /translation="MIGLGGKKLTSNKVKKILNPFPNRDFIEAARDEVLEKAERDYEN
                     FKKTNIIEFPQWLYGPPKGNLFRVEVEDCPRFGDTAYLEFDSARTAFLSVDMQVDFCG
                     PKGYVDVMGYDLGLTSSPIKSIMYVLHTIRNGTDIKVIHTREGHLPDLSDAPYNKILR
                     SKIIGNGVGIGNIPDGGLGRLLVRGEKNWDIIDDLYPVEGEYVIDKAGKGAFGQSNLP
                     LLLRNLGITHLVVTGVTTDVCVHTIMREANDYGYWCLLLKDGTSATDYQNYLAAIKQI
                     KMQGGVFGWVSDSSRFVKGIKSAFSQGGNKK"
     gene            complement(1279..>2147)
                     /locus_tag="VFI64_07395"
     CDS             complement(1279..>2147)
                     /locus_tag="VFI64_07395"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HET7243151.1"
                     /translation="LKPTYGRVSKYGVMQLAPSIDHIGPITRTAWDAAAVLNVIAGYD
                     ELDASSIDSSVPDYVALITENKEKATKFKLGIPKEFFFDLINSKVMDIFEGFVNKLHE
                     VGISTNTVNLEETDKIYDTWRAFRLGESAAVHSEWMKTRREEYGSDVLAMLEKGLEIT
                     AVEYIKAQTTRQILKSAFLKSMKGFDGLLVPTSGITAPLLDQKMVDVNGRSLEVYQVL
                     SRLTTVFDVTGLPVLNVPAGLVDGKLPVGVQLVGRPFDEGSILSMAYIYEKYHRIAQT
                     MVPPIVKESGSE"
BASE COUNT          600 a          500 c          362 g          685 t
ORIGIN      
        1 acaggtacaa caataccatt ccaattcctg ttaatgctac cttatctttt gcccattgcg
       61 atattggcag ccacatacaa gagaagtgta gcaccagcgg ccttagcagt accttatacc
      121 aggggagaaa gataagctta atagttttag ggcacggcga aaaatttcat cgtaacagat
      181 aggtaattgg gaactaaact acactgtaca tcaatgtttg agccaggttc atgtttagga
      241 gtttgctctg ataatacgta attctcccat atgcggggtg ctactttttg ttgccccctt
      301 gcgagaaagc agactttatt ccctttacaa atcttgatga atctgagacc caaccaaata
      361 cgcccccctg catcttgatc tgttttattg ctgctagata attttggtag tccgtagcgc
      421 ttgtaccgtc tttcagaaga aggcaccagt aaccgtaatc attcgcttct ctcattatcg
      481 tatgtacaca cacatcagtt gttaccccag taactactag atgggttatg ccaagatttc
      541 gtaaaagtaa tggtaagttg ctctgaccaa aagctccttt acctgcttta tctattacgt
      601 actctccctc taccggataa agatcatcta ttatatccca gtttttctcc cctcgaacca
      661 gaagccttcc taaaccacca tctggaatat ttccaatacc aactccgtta ccaataatct
      721 tactccgcaa gatcttattg tatggagcat cagaaagatc tggaagatga ccttcccttg
      781 tatggattac tttgatgtct gttccatttc gtattgtatg taaaacgtac atgatagatt
      841 taatcggcga tgaggttaat cccaggtcgt aacccatcac atctacgtat cctttaggcc
      901 cacagaaatc aacctgcata tctacactca gaaaggcagt tcttgcagag tcaaattcaa
      961 gatatgctgt atctccaaaa cgtggacaat cctctacttc tactctaaac agattacctt
     1021 ttggaggacc ataaagccat tgagggaact caattatatt ggtcttcttg aaattttcgt
     1081 aatctctttc ggctttctcc aacacttcat ctctggccgc ttctatgaaa tctctatttg
     1141 ggaatggatt cagaatcttt tttaccttgt ttgaggtcaa ttttttaccg cccagtccta
     1201 tcaatcatgc ctgaatttat agtagtaatg aaacctatca tggtatctat caataatggt
     1261 atacctcata tttttatatt attcacttcc cgactccttg actataggtg gaaccatagt
     1321 ttgggcaatt ctatggtatt tttcataaat gtatgccatg ctaagaatag atccttcatc
     1381 gaatggtctt cctactaatt gaactcccac tggcagcttg ccatccacta atccggcggg
     1441 aacgttaagg acaggcaaac ccgtaacatc gaaaacagtg gttaatctgc taagcacttg
     1501 atagacctcg agactccgtc cattcacatc taccatcttc tggtccaata acggggctgt
     1561 gatgccagag gtagggacca acaagccatc gaatcctttc atagatttta aaaatgcaga
     1621 tttcaaaatt tgcctagtag tttgtgcttt aatatactct actgcagtaa tttctaatcc
     1681 tttttcaagc atagctaaaa cgtcgcttcc atattcttcg cgcctagtct tcatccattc
     1741 actgtgtaca gctgcagact ctccaagtct gaatgccctc caagtatcat atattttatc
     1801 agtttcctct aaattaacag tatttgttga tattccaacc tcatgaagct tgtttacgaa
     1861 tccttcaaaa atatccatta ccttactatt tatcagatca aagaagaact cttttggtat
     1921 tcccaattta aatttggtcg ctttttcttt gttctctgta atgagtgcaa cataatcagg
     1981 cacagatgaa tcaatacttg aagcgtcaag ctcgtcgtag ccggcaataa cattcagaac
     2041 agctgctgca tcccaagcag ttcttgttat tggtccaata tgatcaattg agggtgccaa
     2101 ctgcataact ccatatttgc ttactcttcc atatgtcggc ttgagcc
//
LOCUS       DASSIK010000402         3824 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_1276767, whole genome shotgun sequence.
ACCESSION   DASSIK010000402 DASSIK010000000
VERSION     DASSIK010000402.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3824)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3824)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3824
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1276767"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(255..911)
                     /gene="serB"
                     /locus_tag="VFI64_07400"
     CDS             complement(255..911)
                     /gene="serB"
                     /locus_tag="VFI64_07400"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0036424 - L-phosphoserine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HET7243152.1"
                     /translation="MLIIFDVEGVLLNAEYLPVLAQKFGPQKEKEIWDITKQGIRGEI
                     DWEDGLCKRVNALRGIPYEDALSIGVNLEIMPGAKVLCNALRNAGWKMIAVSGGFTII
                     TDRLKKELLLDKIYSNELVFKDGKLDEVIISVTSDKSKAVNEIIREWGIRKEDIVVVV
                     DGANDLKLFEIAGFTVGFCPVDVVKARADAIIEIRDLTLLLNLLEKKYGKAVLTNTKQ
                     "
     gene            1237..1542
                     /locus_tag="VFI64_07405"
     CDS             1237..1542
                     /locus_tag="VFI64_07405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243153.1"
                     /translation="MSDVPEAKYLVTVKNVEKAIKLDEVAKAELHSVGMMDDKGKLKL
                     KGVSPKMLKRMKLEAVDCPVLSKEVGFVQCYVCSNFHSRISGKVYCKGEPLQLGQAS"
     gene            1568..3016
                     /gene="proS"
                     /locus_tag="VFI64_07410"
     CDS             1568..3016
                     /gene="proS"
                     /locus_tag="VFI64_07410"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004827 - proline-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006433 - prolyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HET7243154.1"
                     /translation="MKKEIGITASRDSDFSEWYLQSVIKAGLADYAPAKGFIVLRPYG
                     YEIWEIIKGILDEKLKNLGHQNGFLPTLIPESLLSKEQDHFAGFMPEVFWVTKAGDND
                     LAEKLAIRPTSETLAYSMFAKWISSHRDLPLKLNFWNSALRAEIKSTKPFIRNSEFLW
                     QEGHTAHTTEEEADIEVRMILDVYKDLVENYLSIPTMSGYKSEKEKFVGAKYTTCLES
                     LMIDGKSLQMATSHQLGQNFAKPFEIKYLGKDMIEHFVWQTSWGISWRLIGAIIMTHG
                     DDKGVIIPPRIAPIQVVIVPIYKDVNKELVVTAARRLKDILGLDGIRAHLDDRDEFTS
                     GWKFNYWETKGVPLRINLGPRDVENNQIELVRRDTKQKDIVANSDAIAEVKSLLAKIQ
                     INLFDQAVKRLDEKTNVTSDLNEAKILLETKTGFISTFWCGNSTCEEKIKDETSADIR
                     LIPFEGQDKLDGKLCISCGLSAKSHVILGRAY"
     gene            3057..3698
                     /locus_tag="VFI64_07415"
     CDS             3057..3698
                     /locus_tag="VFI64_07415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VTT domain-containing protein"
                     /protein_id="HET7243155.1"
                     /translation="MTSIEDLFAFYDDFGYLGILLISFIGSIIVFVPVPYFPILITAA
                     FNKNLDPHLISLFSAIGAVSAKLIIFYASYYGRNILSSRVRSKMLPLQRLLSKYGWGG
                     AFVAALTPIPDDLVYIPLGLAKYSPWKFASATFAGKFIFNEVLVLGAVYFGKPFVDKL
                     ISDTSTPFTLIVGAAVSIIALGIIIYLSYKIDWAKVIGRWFPWTVDKSDGNNE"
BASE COUNT         1212 a          719 c          756 g         1137 t
ORIGIN      
        1 agctatcttt ctagcttcca atgaagggac aatgtctctc agatcaacca acctgccctc
       61 tgattttgat atgattttgt gcgtgataac aaggatatcc ttgtcaatta ggttatgatt
      121 tcccttccta atcgaattca aaattatttc ggcaatatcg tcaccactcc gtatatctcg
      181 cgcaacgaat atcggaatga tttctatgct attcgaatta tgcagtctat gctgtcatcc
      241 ccaataacga aacattattg tttagtgttc gtcagcacag cttttccata ttttttttct
      301 aaaagattta acaagagagt caaatctctg atctcaatta ttgcatctgc tcttgccttt
      361 actacgtcaa cggggcaaaa accaacggta aaacccgcga tttcaaataa tttaaggtca
      421 ttggcaccgt ctacaacgac aacgatgtcc tctttcctta tcccccattc tctaataatc
      481 tcgttgaccg cctttgactt atcagaagtt acactaatta taacctcatc cagttttccg
      541 tctttgaata caagttcatt ggaatatatt ttatctaaca ataattcctt ctttagtcta
      601 tcggtaatta tcgtgaatcc tcccgagact gcaatcatct tccaacctgc atttctcaga
      661 gcattacaaa ggacctttgc tccaggcatt atctcgagat ttactccgat gctcaaagca
      721 tcttcgtatg gaataccacg cagtgcgttc acgcgcttgc acaaaccgtc ttcccagtct
      781 atttctcctc gaataccttg tttcgtaatg tcccaaatct ctttttcttt ttgtggtcca
      841 aatttttgtg ctagtacagg caaatactca gcatttagta gtacgccttc tacatcgaag
      901 ataattaaca tatcaactat tgtacgaaaa tgtccatttc ttagaatata ttaagcttct
      961 ttaaataagt gataaataca cataaatttc gagtgctaga acgcgcctat aacctaaatc
     1021 atttctggat gtacaaattt agctgaacat tttccgccag gcacaaaaca aaagctctaa
     1081 aatattttct attcatatgg cacagggtga atcgtaaacg caaagaattg gtgtaatgtt
     1141 cacaatgcaa ttttgcaagt tgaggtggcg acataatttt gcatatttca tgtgtcggaa
     1201 aggtcatata gcacaatgtt acattaatga acttcaatga gcgatgtgcc agaagcaaaa
     1261 tatctagtga cggtgaaaaa tgttgagaaa gccataaagt tggatgaggt tgcgaaggca
     1321 gaactacata gtgtgggaat gatggatgac aaggggaaac ttaaactgaa aggagtaagt
     1381 cccaaaatgt taaagcgaat gaaacttgag gcagtcgatt gtccagtcct atcaaaagag
     1441 gttggattcg tacagtgtta tgtgtgtagt aactttcaca gtagaataag tggcaaagtc
     1501 tactgtaaag gcgaaccact ccagttagga caagcttcat aaaacaacca aattaagtta
     1561 gtccggtttg aagaaggaaa taggcataac tgcttctcga gattcagatt ttagtgagtg
     1621 gtatctccag tcggtgatca aggcaggttt agcagattat gcacctgcca aaggattcat
     1681 tgtgctcaga ccgtatggtt atgaaatttg ggaaataatc aaagggattt tagacgaaaa
     1741 actaaagaat cttgggcatc aaaacggttt tctacccaca ttaatacctg aaagtctttt
     1801 gtccaaggaa caagatcatt tcgctggctt catgccagaa gtattttggg ttaccaaagc
     1861 aggtgacaat gatcttgccg agaagttagc aatccgacct acttcagaaa ctttagcata
     1921 ctctatgttt gctaaatgga tttccagtca tagggatctt cctctgaaac taaatttctg
     1981 gaatagtgct ctccgagctg aaattaaatc tactaaaccg tttatcagaa attcagaatt
     2041 tttatggcaa gaaggtcata cagcacacac caccgaggaa gaagctgaca ttgaggtcag
     2101 aatgatactt gatgtttaca aagaccttgt ggaaaactac ctcagcatac caactatgtc
     2161 cggttataaa tctgaaaaag aaaaattcgt gggcgcaaaa tacacaactt gcctggaatc
     2221 attgatgata gacggaaaat cattgcagat ggccacttca catcaactag gtcaaaattt
     2281 tgctaagcca ttcgagatca aatacctggg aaaagacatg attgagcatt ttgtgtggca
     2341 gacatcatgg ggcatctctt ggagattgat tggagcaata ataatgactc atggtgatga
     2401 caaaggtgtc ataatacctc cgcggattgc ccctattcag gtggtaattg taccgattta
     2461 caaagatgtt aataaagaat tggtggtgac agctgcacgt cgtctaaagg atattttagg
     2521 tctagacggg atacgagcac atttggatga cagagatgaa tttacatcag gatggaaatt
     2581 taattattgg gaaacaaagg gagtcccatt gcgtataaac ttgggtccta gagatgtcga
     2641 aaacaatcaa atagaattgg tcaggcgaga cactaaacaa aaggatattg tagcaaattc
     2701 agatgcaatt gcagaagtca aatcgttgct cgccaaaata caaatcaacc tttttgatca
     2761 ggccgttaaa agattggatg aaaagacgaa cgttacctca gatttgaatg aggccaaaat
     2821 attactagaa actaaaacag gtttcatttc cacattttgg tgtggaaata gtacatgtga
     2881 agaaaaaata aaagatgaaa catctgcaga tatcaggctg attccatttg aaggacaaga
     2941 taaactcgat ggcaaattat gtatttcctg tggattgagt gcaaaatcac atgtcattct
     3001 aggtagggcg tattaacaag tagatatatg ggagcaaggc taaatcacac tagcagttga
     3061 cttctataga ggatctgttt gcgttctacg atgattttgg atatctcggg atactcttaa
     3121 taagtttcat agggagcata atagttttcg taccagtacc atattttcct atattaataa
     3181 cggccgcatt taataagaat ctagatcctc atttaatctc tcttttcagt gctataggag
     3241 ctgtttctgc gaagctaatt atattttacg caagctatta cggtagaaat atcctgagtt
     3301 ctcgagtgag gagtaaaatg ctacccttgc aaagattgtt aagtaaatat ggctggggtg
     3361 gggcatttgt tgcagcgctt acacctatac ccgacgacct agtgtacatc ccacttggtt
     3421 tagctaagta tagtccgtgg aaatttgcca gcgcgacatt tgcgggaaaa tttattttta
     3481 acgaagtcct tgtgttggga gcagtatact ttggtaagcc atttgtggat aaattaattt
     3541 cagacactag tacgccgttc acattaatcg tcggcgcggc agtaagcatt atcgcactag
     3601 gaataataat atacttatca tacaaaatag attgggccaa agttataggc cgttggtttc
     3661 catggacagt cgataaatca gacggaaata atgagtagtt tgttcacttt tgcatatcgt
     3721 ggtacattga ctaagagtat ccataattct tttattgcat ccgatggagt ttgaaaatat
     3781 tctcagcaac atgaatatca cgtcgcatat tccggaccga atac
//
LOCUS       DASSIK010000403         2952 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_95282, whole genome shotgun sequence.
ACCESSION   DASSIK010000403 DASSIK010000000
VERSION     DASSIK010000403.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2952)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2952)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2952
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95282"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..264
                     /locus_tag="VFI64_07420"
     CDS             <1..264
                     /locus_tag="VFI64_07420"
                     /inference="COORDINATES: protein motif:HMM:NF014089.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AIM24 family protein"
                     /protein_id="HET7243156.1"
                     /translation="FLNAFGGIIRREILIGEKFILNNFHLVALNLDADYKVTKFGSLK
                     STLLGEEGFVMEINGPAVVYFQTKNKPQLVEFLGLNQKDGNSR"
     gene            complement(440..2251)
                     /locus_tag="VFI64_07425"
     CDS             complement(440..2251)
                     /locus_tag="VFI64_07425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HET7243157.1"
                     /translation="MSEYEDMRTADIVAEALLDWKVEVIFGLPGDGINGFMEALRRRK
                     DKIKFILVRHEESAAFMACAYAKYTGKLGVCVATSGPGAIHLLNGLYDAKLDNTPVLS
                     ITGSTYSDLMNSNYQQDVNLLQLFSDVTVYNNMINRPEHAEMTVDIACRSALSLRGVS
                     HLTIPIDVQEMKLKGRYSRHKVPGHTSDFYANITVPERGLLEDAANILNSGRKIVLLV
                     GQGALSAGDEVIQVAEKLEAPVVKALLGKAVIPDDHPLCIGGLGLLGTEPATDAMNEA
                     DTLLMIGTSFPYIDYLPKPGQAKGIQIDIKPNNIGLRYPVEIGLVGDSKLVLSELLPL
                     LQQRSETERGFLKSKQDAMVDWNKLLKEQSSRTDKPIKPQVIADAVSELLEDNAIISV
                     DCGTNTSWAAQYINIRKGMKFSLSGTLATMACGLPYAIAAQIAFPDRQCIAFVGDGGF
                     TMLMGEFATAVQYNLPIKIIVIKNNTLGMIRWEQMAFLGNPEYGVEFTPIDFVKFAEA
                     CGGIGYAIKEPDEISSIMEQAMKMDKDRRKPVIIEASVDPFEPPMPPKVEMEFVTNLA
                     ESFVKGQPYAKRIGLTLFRNQVHNILKNIHTHSVHDE"
     gene            complement(2599..>2952)
                     /locus_tag="VFI64_07430"
     CDS             complement(2599..>2952)
                     /locus_tag="VFI64_07430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243158.1"
                     /translation="IDNDEYLKNEKELYNQNLTSSDQNAEYAFIAADKSVWFIDFIIG
                     IAFKTPIDFYNELNGLEQSGRKYKWFDDILGLQFYLDEIVLGQEIVIETTVNPENGKE
                     NDDPKILWQPKLIPK"
BASE COUNT          898 a          578 c          473 g         1003 t
ORIGIN      
        1 ttcctgaatg cttttggagg cataattagg agagaaatac tgattggtga aaaattcatt
       61 ttaaataatt ttcacctcgt ggctctaaat cttgatgctg actacaaagt gactaaattt
      121 ggaagtctaa aatcaacttt actgggagaa gaaggttttg tcatggagat aaatggtcca
      181 gcagttgtat acttccaaac taagaataaa ccgcaattag tagaattcct tggtttgaat
      241 caaaaagatg gtaattccag ataatatcat acactaaatt tattggacaa tcacactaac
      301 catcgaataa gccatcaatt tttttaattt tttgtatgct aatcagcaaa aactaatcat
      361 tttcattaaa aaaattttgc tctgaattga aattcttatt attctgtata tgtttactct
      421 attcatatca acgaatagat cactcatcat gcactgaatg ggtgtgtata ttttttaaaa
      481 tattatgtac ttggtttcta aatagagtta atcctattct tttagcatat ggttgtcctt
      541 ttacaaagga ttcagccaga ttagtaacaa actccatttc gaccttagga ggcattggag
      601 gttcaaaagg atcgacagat gcttcaatta tgactggttt ccttctatcc ttatccattt
      661 tcatggcttg ttccatgatg gagctgattt catctggttc ttttattgca taacctatac
      721 ctccacaagc ttcagcaaat tttacaaaat ctattggcgt aaactctacg ccatattcag
      781 gattcccaag gaatgccatt tgctcccaac gtatcatacc aagagtatta ttttttatga
      841 cgattatttt gataggaaga ttatattgaa cagccgttgc aaattcaccc attaacattg
      901 taaatccccc atctccaaca aaagcaatac attgtctatc agggaatgcg atctgtgcgg
      961 caattgcgta tggtaagccg catgccatcg tagctaatgt tcctgacaaa gagaatttca
     1021 tcccctttcg aatattgatg tattgtgcgg cccatgaagt atttgtaccg cagtcaacag
     1081 agattatggc attatcttca agtaattctg ataccgcatc tgcaataacc tgtggtttga
     1141 ttggcttgtc agttctacta ctttgttctt tcaataactt attccaatcc accattgcat
     1201 cttgtttaga ttttagaaac ccacgttctg tctcactcct ctgctgcaac aatggtagca
     1261 attctgataa tacaagttta gaatcaccta ctaagccgat ctcaaccgga taacgcaatc
     1321 caatattatt tggtttaata tcaatctgta ttccctttgc ctgtcccggt tttggaaggt
     1381 agtcaatata aggaaatgat gttcctatca ttagtaaggt gtcagcttca ttcatggcat
     1441 ctgttgcagg ttcagttcct aaaagtccta gaccgccgat acagagagga tggtcatctg
     1501 gaattactgc ttttccaagc aatgccttca cgacaggagc ctccagcttt tctgccactt
     1561 gtattacttc atctcctgca ctaagagccc cctgtccaac aaggagcaca attttcctac
     1621 cagaattcaa aatatttgcg gcgtcttcta atagacctct ttctggtacg gttatgttgg
     1681 cataaaagtc cgaagtgtga cctggtactt tatgcctgga gtatcttcct tttagtttca
     1741 tctcttgtac gtcgattgga atagttaagt ggctaacacc ccgcaaagat aatgctgacc
     1801 tgcacgctat atcgactgtc atttcagcgt gctcaggcct atttatcatg ttattataaa
     1861 cagtaacgtc tgagaagagt tgtaaaagat taacatcttg ctgataatta gaattcataa
     1921 gatcagaata agtactgcca gttattgata aaacaggggt gttgtctaac tttgcatcat
     1981 ataatccatt taaaagatgt atggcaccag gtcctgaggt agcaacacac actcctaatt
     2041 ttcccgtata tttcgcataa gcacaagcca taaaggctgc tgattcttca tgtctaacaa
     2101 gaataaattt aattttgtct tttcgtcttc gtaatgcttc cataaatcca tttattccat
     2161 cacctggcag accaaaaata acttcaactt tccaatcaag taaggcctca gcgacaatgt
     2221 cggctgtacg catatcttcg tactcgctca taactcattg aaccacaatg taatataagt
     2281 gagtttatga caatcggaac tgtatattta atttcttaat gaaagctatg aagataagac
     2341 agttcgacaa ctattaattt tcaaattcgt ataatttcat ggtggcctga ctgcactcaa
     2401 tattgccatt agagaagaat ttatgttgaa aaagctgagc aacaagtata gactttatta
     2461 taatataacg tcaaagacct ttttattgac aatataattt gtgaattctt atctctcata
     2521 attgtattat attggtcagt cgaccactaa acaaatgaaa taatctatca cataagacac
     2581 tattttcttt catttctgtt attttggaat caactttggc tgccataaaa ttttagggtc
     2641 atcattttct ttaccatttt caggatttac cgttgtttct attacaattt cttgacctaa
     2701 aacaatttca tcaagataaa attgaagtcc cagaatgtca tcaaaccatt tatactttct
     2761 gcctgattgc tctaggccat ttaattcatt ataaaaatcg ataggcgttt taaatgctat
     2821 tccaatgata aagtcaataa accatacaga tttatcagcg gcaataaatg catattctgc
     2881 gttttggtca ctgctcgtca aattttgatt gtatagttct ttctcattct tcagatattc
     2941 atcattatca at
//
LOCUS       DASSIK010000404         2634 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_95394, whole genome shotgun sequence.
ACCESSION   DASSIK010000404 DASSIK010000000
VERSION     DASSIK010000404.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2634)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2634)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2634
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_95394"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..534)
                     /locus_tag="VFI64_07435"
     CDS             complement(<1..534)
                     /locus_tag="VFI64_07435"
                     /inference="COORDINATES: protein motif:HMM:NF013486.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family N-terminal
                     domain-containing protein"
                     /protein_id="HET7243159.1"
                     /translation="MEKKIKANNFIKIVFKCRRERILSYLSDGGFEGAVMFTPENIFY
                     FTGFWGESIAICTHDGVKLFVPQLEVSRAETESFDCEIFQTERGEDSSKSLYPYLSYS
                     KFCSDCNDFKSIDSIHKKISEKNFICDSQPFMDIRSIKDENEIEMIKKSSEIIDKLYQ
                     VCVEEIKVNLSEKELQAK"
     gene            579..1721
                     /locus_tag="VFI64_07440"
     CDS             579..1721
                     /locus_tag="VFI64_07440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--glyoxylate aminotransferase family
                     protein"
                     /protein_id="HET7243160.1"
                     /translation="MDYLVMLPGPTNVPNRVTNAMSSPMINHRSDDFRTLYKDIIAKT
                     KVVFETENDIVLLTTSGTGAVEASVVNLIKKDDAVIVPVNGEFGTRLADLVDNVGGRA
                     IRINAPFGENPSLEKIKEAFEINRNVKALYAIYNETSTGTTLRYMSELGKICEDNDTF
                     FVADAVSILGGDDLPVDKWKVDICVTASQKALAAPPGLAPMSISKEAKKYMIENPPAT
                     QYLNLKRYFKYFEENFETPFTPAISLFYAFREALEIITEEGMRNRIERHRLCAKALYA
                     GLKELGLAPFAQEDARSNVVIAINYLQGMDDKKFREILSSQFRVLLAGGFGELKGKVF
                     RIGCMGEVTSYHVMRTLSAISSTMEMLKVPAQGEGLSVAHEILGAK"
     gene            1785..2555
                     /locus_tag="VFI64_07445"
     CDS             1785..2555
                     /locus_tag="VFI64_07445"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HET7243161.1"
                     /translation="MALEKGSLILIDYTAKTKDTNEVFETTVEDEAKNLQSYDPTVKY
                     EPRLVSVGDGWVIKGLDEALSNSNAGDKIDVEISPDKGFGIRDPSKIRMIAQRKLGEK
                     ADELRPGDIVDIDDRKGIIRFVGSGRVQIDFNHRLAGRTLNYSVNILKMLTLDEEKIK
                     SLIRRRLPIDSEKLRAEINDQSLSITIPEDSTLIEGLQIIRKAIANDLFKYLPTFQNI
                     KFIEEYIRAEKETIEEKKDTPKVEKETIEEKKVSQKKV"
BASE COUNT          860 a          476 c          552 g          746 t
ORIGIN      
        1 ttttgcttga agttcttttt ctgataaatt aaccttaatt tcttcaacac aaacttggta
       61 gagtttatcg ataatttcgg aagacttttt tatcatctct atctcatttt catcttttat
      121 gctcctaata tccatgaagg gttgggaatc acagatgaag tttttctcac ttattttttt
      181 atgaattgaa tcgattgatt taaagtcgtt gcaatctgaa cagaatttgg aatatgacaa
      241 ataagggtac aaggattttg aggaatcttc acctcgctca gtctgaaata tttcacagtc
      301 aaatgattct gtttctgctc gtgaaacttc cagttgaggg acaaagagtt tcacgccgtc
      361 gtgagtacat attgctattg attcacccca aaatcccgtg aagtaaaaga tgttttccgg
      421 tgtaaacata acggcaccct caaaaccacc atctgaaaga taagaaagta tcctttctcg
      481 acgacacttg aacacgattt taataaaatt gttcgctttt atcttttttt ccaaattagt
      541 tttaaatatc gggtatgatt cccatgttct gattaaaatt ggattatctt gtcatgcttc
      601 caggtccgac caatgtacca aatcgtgtaa caaatgcaat gtcaagccct atgatcaatc
      661 accgaagtga cgattttagg acactctata aagacattat agccaaaact aaggtagtct
      721 ttgagactga aaatgatatt gtgcttctca ctacatctgg cactggcgca gtggaagcct
      781 ctgttgttaa tctcataaaa aaagatgatg cagtaatagt tcctgtcaat ggtgaatttg
      841 gaactaggct tgcggatttg gtggataacg tgggcgggag agcaattagg attaatgcgc
      901 cctttgggga gaatccttcg cttgaaaaga tcaaagaagc ttttgaaatc aatcgcaacg
      961 ttaaagccct ctacgcaatt tacaatgaaa cttctacagg cactactctc aggtacatgt
     1021 cagaattagg aaagatttgt gaagacaatg acacattctt cgttgcagat gcagtatcaa
     1081 ttcttggtgg tgacgatcta cccgtagaca agtggaaagt agacatatgt gttactgctt
     1141 cgcaaaaagc tttagcggca ccaccagggt tggctccaat gtcgattagc aaggaagcaa
     1201 aaaagtacat gatagaaaat ccccctgcta ctcagtacct aaacttaaag cgatacttca
     1261 agtattttga ggaaaacttt gaaacgcctt ttactcctgc gataagtcta ttctacgcct
     1321 ttcgggaggc attagaaatc atcactgaag aaggaatgcg taacagaatc gaacgtcaca
     1381 ggctatgtgc aaaagcgctc tacgcaggat tgaaagagct cggattagcg ccatttgctc
     1441 aggaagatgc cagaagtaat gtggttatag ccataaacta tctacagggc atggacgaca
     1501 agaagtttag ggagattctt tcatcacaat ttagggtctt attggctggt ggatttggag
     1561 aattaaaagg caaagtattc agaataggat gtatgggaga agttactagt taccatgtta
     1621 tgagaactct ttccgcaatt tcatcaacta tggaaatgct taaggttcca gcccaaggtg
     1681 aaggcctatc tgtcgctcat gagattcttg gggctaagta attaacttgt gtgttcttat
     1741 ttgttcatta agcttaatat tatggtgacc cgacagcaaa ttccgtggcg ttagagaaag
     1801 gatcactaat tcttattgat tatacagcta aaacaaagga tacgaatgaa gtctttgaaa
     1861 ctacagtaga agatgaggca aaaaatcttc aatcatatga tccgacggtg aagtacgaac
     1921 cccgactggt ttcggttggt gatggttggg tgatcaaagg cctggacgaa gcactgtcta
     1981 actcaaatgc cggtgataag atcgatgtcg aaatctctcc ggataaagga tttggaatta
     2041 gagatcccag caaaatcaga atgattgctc agcgaaaatt gggggaaaaa gcagatgaac
     2101 ttagacctgg tgatattgtt gatattgacg atcgaaaggg gataattaga ttcgtaggtt
     2161 caggtcgtgt acaaattgac ttcaatcaca gactcgctgg caggacgtta aactatagtg
     2221 taaatatcct gaaaatgctt acactcgatg aagagaaaat aaaatcgctc attagaagga
     2281 gattgcctat tgatagtgaa aagctaaggg ccgaaattaa cgatcaaagc ctctctatta
     2341 ccatacctga agactcaacc ttaatcgaag gtcttcagat cataagaaag gcaatagcaa
     2401 acgatctctt caaataccta cccacttttc agaacattaa attcattgaa gaatatatac
     2461 gggctgagaa agagactata gaagaaaaga aagacacacc caaggttgag aaagagacta
     2521 tagaagaaaa gaaagtatct cagaaaaagg tttaaaatgt tattttagca aatagatccc
     2581 agtagatccg aggagatcgg caccggcaga cggatatctg ctcaaaattt aatc
//
LOCUS       DASSIK010000405         2443 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_289041, whole genome shotgun sequence.
ACCESSION   DASSIK010000405 DASSIK010000000
VERSION     DASSIK010000405.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2443)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2443)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2443
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_289041"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1354)
                     /gene="thsA"
                     /locus_tag="VFI64_07450"
     CDS             complement(<1..1354)
                     /gene="thsA"
                     /locus_tag="VFI64_07450"
                     /inference="COORDINATES: protein motif:HMM:NF041082.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thermosome subunit alpha"
                     /protein_id="HET7243162.1"
                     /translation="MQNRQLLGEGVRRSSGGKARRYNLLAARLIADLVKGLLGPLGLE
                     KMFIDIMGETTVTKDGATFLRKIDVEHPAAKLLIEASNAVDNAVGDGTTSVVVLAGAL
                     VERAEELLDMGIPPTIISDGYLNALDMAIEILRAISVESINSNRMIMESLAGTCFASK
                     AFSHITEEMKIVRLIVNAICQIANFSNNYVDVDDIKIEEKMGNISETELVDGIVIDKT
                     IDNSSMPHIIENARVLLLDVDIENEQTKADAQISISVPSDLGRYLEYGTKNTVQKIQN
                     VLDSGANVIFSRGGISPLAQNYFAKKGIMTVRRVKENDLLWLEKATGARITRDLDRIT
                     SDDIGFAAEVCQKFVGDDKMVFVDGCKNPKSVTLLLRASSKVILDEFHRAVLDCLYVL
                     RDFVAMPRIVAGGGAAEAIISHLVKEKSYLISGKEQIVIQKFAEAVEEIPLTIAINAG
                     M"
     gene            1723..2025
                     /locus_tag="VFI64_07455"
     CDS             1723..2025
                     /locus_tag="VFI64_07455"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018003345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009039 - urease activity [Evidence IEA];
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0043419 - urea catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit gamma"
                     /protein_id="HET7243163.1"
                     /translation="MFLAPREMDKLYIFMTAELARKRRGRGLKLNYVESVALIADHIL
                     EGARDGRSVSELMNSGRHVLQRDEVLSGVPELVQSVQVEATFEDGTKLVTVHSPII"
     gene            2045..2407
                     /gene="ureB"
                     /locus_tag="VFI64_07460"
     CDS             2045..2407
                     /gene="ureB"
                     /locus_tag="VFI64_07460"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0035550 - urease complex [Evidence IEA];
                     GO_function: GO:0009039 - urease activity [Evidence IEA];
                     GO_process: GO:0043419 - urea catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit beta"
                     /protein_id="HET7243164.1"
                     /translation="MIPGEYFLSKAPVVANIGRKVIKIKVANTGDRPIQIASHTHFFE
                     VNKALMFTRGRAFGFHLNIPSGTSVRFEPGDSRIVELTEYGGKKIVFGFYGLVNAKLS
                     DKQKKISLEKLKKIGFRE"
BASE COUNT          750 a          486 c          435 g          772 t
ORIGIN      
        1 ccattcctgc gttaatagca atagttaatg gaatttcttc tactgcttcg gcaaattttt
       61 gaataacaat ttgctccttg ccagaaataa gatatgattt ttctttaacc agatgggaaa
      121 ttattgcctc ggctgcgccg ccacctgcca caattcttgg cattgccaca aagtctctca
      181 aaacgtataa acaatcgaga accgcccgat gaaattcatc cagtattacc tttgaacttg
      241 cacgcaaaag caaagttact gattttggat ttttacatcc atcaacaaaa accattttat
      301 cgtctccaac aaacttttgg caaacctccg cagcaaaacc tatgtcatca ctagttatcc
      361 tgtcaagatc tcgggttatc cgtgcaccgg tggctttctc gagccatagc aggtcatttt
      421 ccttgactct tcgcactgtc attatgcctt tctttgcaaa gtaattctgg gccaatggac
      481 tgatacctcc tcgtgaaaaa ataacatttg ctcctgagtc taacacgttt tgaatctttt
      541 gaactgtatt cttagttccg tactcaagat atcgtcctaa gtcacttgga acggatatgc
      601 tgatctgtgc atcagccttg gtctgttcat tttcaatatc aacgtctaat agtaatactc
      661 gtgcattttc aatgatgtgg ggcatagacg aattatcaat tgtcttgtca attactattc
      721 catcaactaa ctctgtctca gaaatattcc ccattttttc ttcgatcttt atatcgtcca
      781 catctacgta attgttcgag aagttagcaa tctggcatat agcattaaca atgagtctaa
      841 ctatcttcat ttcctcggta atgtgagaga acgcttttga agcaaagcat gtgccagcga
      901 gagattccat aatcattcta tttgaattaa tggattctac agaaatcgct ctaagaattt
      961 caattgccat gtctaatgca ttaaggtatc catcagaaat tatcgttgga ggtattccca
     1021 tgtctaacaa ttcctccgct ctttctacaa gagcgcctgc taggactaca actgaagtgg
     1081 tgccatcgcc cacagcattg tctactgcat tggatgcttc gattaataac ttggcagcag
     1141 gatgctccac atcaatttta cgaaggaaag ttgcaccatc tttagtaaca gtagtctctc
     1201 ccataatgtc aataaacatt ttttcaaggc caagaggccc taataatccc ttaaccaaat
     1261 ctgcgattaa tcgtgcagct agtagattgt atcttctggc ttttccgcca gagctcctcc
     1321 ttacaccttc cccaagtaat tgtctatttt gcattttcat atcaacacat aagataacgc
     1381 tgtatttccg taattaagga gtaatttgaa caattcctaa ttgatatcat ataaaacact
     1441 cctgatggat tgttgtacat tgcaatgtag tcatatgtaa cccatatgcg ttttatatga
     1501 accttttaat tcgtaaaata tcaatgatga attgattatc aacctgaacc taatatttac
     1561 tacgaggaat tagatcgata ttaccctatc agcaatttga atatacatta tgatcttcta
     1621 ttaaagaaca aatcttggga ttctaggtaa ttcacgaaaa tgaactttca ttattaagat
     1681 taattatata tacatcaatt tataataaat tttgaattta aaatgtttct tgctccacga
     1741 gaaatggata aattgtacat tttcatgaca gcagaactag cacgcaaaag gagaggcaga
     1801 ggtttgaaac tcaattatgt tgagtcggta gcactaatag ctgaccatat ccttgagggt
     1861 gcccgcgatg gcagatctgt ttctgaactc atgaactctg gaagacatgt cctacagaga
     1921 gatgaagtac tatcaggtgt tccagaacta gtgcaaagtg tacaggttga agctactttt
     1981 gaagatggta ctaaactcgt aactgttcat agcccgataa tttgaattat ggagtaaatg
     2041 gatattgatt cctggagaat attttttgtc taaggcaccg gtagttgcca acataggtag
     2101 aaaagtaata aaaataaagg tagcaaacac gggagataga cctatccaga tagcctcaca
     2161 tacgcatttt ttcgaagtga acaaggctct aatgtttacg agaggaagag cttttggatt
     2221 tcatcttaac attccatctg gtacatcggt ccgatttgaa cccggcgatt caagaattgt
     2281 ggagttaact gaatacggag ggaaaaagat agtctttggt ttttatggcc ttgtcaatgc
     2341 taaactttct gataagcaga agaagatatc acttgaaaag ttaaagaaaa ttggttttcg
     2401 ggaatgaggt aatacatggt tctgaaaatt ccgaaaagac aat
//
LOCUS       DASSIK010000406         2037 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_386100, whole genome shotgun sequence.
ACCESSION   DASSIK010000406 DASSIK010000000
VERSION     DASSIK010000406.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2037)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2037)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2037
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_386100"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(38..256)
                     /locus_tag="VFI64_07465"
     CDS             complement(38..256)
                     /locus_tag="VFI64_07465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243165.1"
                     /translation="MVDIVMNGRINDFENICIKCGKMYSEHPTTGRFSTVILFGHECA
                     WNPDNEFKGFVKSTLKKSGYDLLDFGYK"
     gene            complement(314..736)
                     /locus_tag="VFI64_07470"
     CDS             complement(314..736)
                     /locus_tag="VFI64_07470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243166.1"
                     /translation="MQQCENCTKKGKNVYCNNCIKKADYFDVYSYDSSTRFDKGDIKG
                     RIKAYTWHDVLEYIKDNFFGDHIKGHLNINCEKDFAYLEEIATEQHITSSSTEKSQRE
                     NKFGYKVYLINEEKSFGSPAFTHSNFWDLTTVTANEDT"
     gene            816..1409
                     /locus_tag="VFI64_07475"
     CDS             816..1409
                     /locus_tag="VFI64_07475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243167.1"
                     /translation="MLPKQLSNRTYHFQALVATITLCGLMISVMFNSYIYAQNWSSYT
                     DPNEIYRLQFPSNWDPSGSNKPEDNRPLALSIQSTDVPSNMRTMIISVVPLTKNVNST
                     LETIKDISMNVNSQGLPTFHVLSSPNYTKYTIDNNPAVSYTFAYDLSGKMKELYVGTI
                     INNTVFHIGYAAPLDQFDLFLPTVEKVLDSIKPLKTN"
     gene            1819..>2037
                     /locus_tag="VFI64_07480"
     CDS             1819..>2037
                     /locus_tag="VFI64_07480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HET7243168.1"
                     /translation="MEGLKKDYHKNIHAINGISFNVKYGKVFGFLGPNGAGKTTTIKV
                     LTTLVSPSAGSVQIFGKDIIKFQSEIRKK"
BASE COUNT          677 a          394 c          302 g          664 t
ORIGIN      
        1 aagggaatta gaggttaaat tgacaattgt ctgataacta tttataccca aagtccaaca
       61 aatcatagcc cgatttcttt aaagtactct ttacgaatcc tttaaactca ttgtctggat
      121 tccacgcaca ctcatgtcca aataaaatta ctgtgctaaa tcttccagta gtagggtgtt
      181 cagaatacat tttaccacat ttaatgcata tattttcaaa atcgtttatt ctcccattca
      241 taacaatgtc taccaagtac aacacatccg tagtacttaa actaaacctt caaaagagat
      301 ccccgcttgg ctattatgta tcctcattag cagtaacagt agttagatcc caaaaattgc
      361 tatgtgtaaa tgcaggagat ccaaaagatt tctcttcatt aatcaaatac actttataac
      421 caaacttatt ttccctttgt gacttttcag tactactact agttatatgt tgttcagttg
      481 ctatttcttc taaatatgca aagtcctttt cacaatttat gttaagatgg cctttaatgt
      541 gatcaccaaa aaagttatcc ttaatgtatt ctagcacatc atgccaagta taagctttga
      601 tcctaccttt tatatcacct ttatcaaatc gggtactact gtcgtagcta tagacatcaa
      661 aataatcagc ttttttgata caattgttac aataaacatt ctttcccttt tttgtacaat
      721 tctcgcattg ttgcataatc atgtgtactg tttactttgc aagattaata ttgattattg
      781 tcgaacattt agattctgga gaggattgaa cacttttgct accaaaacag ctatcgaata
      841 gaacttatca tttccaagca ttagtggcaa ccatcacgct ttgtggtcta atgatatccg
      901 tcatgttcaa ttcctatatt tatgcccaaa actggtcgag ttatacggat cctaatgaaa
      961 tataccgtct ccaatttcct tctaactggg atccatccgg ttcgaataaa ccagaagata
     1021 atagaccatt ggccctgagc attcaatcta cagatgttcc atccaatatg agaactatga
     1081 ttatcagtgt tgttccttta acaaaaaatg taaactcgac acttgaaact attaaggata
     1141 tatctatgaa tgtaaatagc cagggcttgc ctactttcca tgtcctttcg agtcccaatt
     1201 ataccaagta tacaatagat aataatcctg cagtttccta cacatttgca tatgaccttt
     1261 caggaaaaat gaaagagctc tatgtcggaa ccataatcaa taatacggta tttcatatag
     1321 gatacgcggc accactagat caatttgatc tctttcttcc tacagttgag aaagtcctcg
     1381 attcaatcaa accattaaaa actaactaaa gaccggtcta caattcaaaa ttatcaattt
     1441 acgcaataat atattgcgcc taaagtcaac taatacagta tacttatcat cgatgcgatg
     1501 ttagataaaa gatgtggcat cgtttcaata ttcgaacctg aaaagtattt gcttcgaaaa
     1561 tatgtttgaa atgtgacaag caagaaacca tacactcgca aggctcttcc catatttttt
     1621 gtaatgcagg caagtaactc atgatcctta attaactgca acgtttttct atcaagatag
     1681 tgtgttcccc ttattggttc cgagaattag acaaatatac ttaattaaaa acattaacgg
     1741 ttggtaaacc tacttatacg acatttttag taaataccat ataatttgtt ggaacagcaa
     1801 aatgagtttt gcatttctgt ggaaggcctt aaaaaagact accataaaaa tattcatgca
     1861 ataaatggta tttcatttaa tgtgaagtat gggaaagtat ttggatttct tggcccaaat
     1921 ggtgcaggca agaccacaac aataaaagtc ctcacaacgc ttgttagtcc atctgcggga
     1981 agtgtgcaga tctttggaaa agatatcatc aagtttcagt ctgagattag aaagaaa
//
LOCUS       DASSIK010000407         2655 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_290791, whole genome shotgun sequence.
ACCESSION   DASSIK010000407 DASSIK010000000
VERSION     DASSIK010000407.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2655)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2655)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2655
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290791"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            276..746
                     /locus_tag="VFI64_07485"
     CDS             276..746
                     /locus_tag="VFI64_07485"
                     /EC_number="1.-.-.-"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: protein motif:HMM:NF024304.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004733 - pyridoxamine phosphate oxidase
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HET7243169.1"
                     /translation="MSKSFMTNLTYYVMTNDNNADNKNIKFSDKEVKFLLNNEVCRVA
                     TVSTGNIPHVVPVSYIFIDNLFFFATDYNTRKYKNLKKSKNVALVIDIYDSTNNRAVV
                     IQGSGEFIERGEDFKKMYYIFYRKFEWVRQEPWNEGEAPFVVVKPFRKISWGLE"
     gene            1517..1801
                     /locus_tag="VFI64_07490"
     CDS             1517..1801
                     /locus_tag="VFI64_07490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018003564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243170.1"
                     /translation="MDGDKICDSRSTTAYKRGKTFEDCKQEAVRNIQLFSKEIQDTGE
                     ISWSRILEIANHDELVYKLSLKFLRLQGYDIGNNKTPRVTRSSKTEPQLP"
     gene            1804..2451
                     /locus_tag="VFI64_07495"
     CDS             1804..2451
                     /locus_tag="VFI64_07495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243171.1"
                     /translation="MQAITIVILIALSSAILISYAISVLRTTNLSVSSFYTSSISDSK
                     GDAKLIALYKSQIIPEVRDFHDILAANVKRTHDNKLVLSLDLAGDPNKNQKYETVYLW
                     VINYTDSLTGNTRFYTVIIPNFPPDSNFKTKNWNLAIFDNVANAFITPLSKLPAMPID
                     KVEAIIDPILLGNPSSFDYMASVMIRVNSTFLSKPPDYLIDSAPDSDTFWLKWFA"
BASE COUNT          906 a          461 c          468 g          820 t
ORIGIN      
        1 attgtctgac ataatacgca acatagccac tcgacattct tatggaatgt tgctggattg
       61 gggtaaaaga gctgatgtgc tcaaacctac cgataaataa gtgctgaaga aagatgcctt
      121 gagccagatt tgcccgttaa aatcggtgat agatgtatca cttataaaat cattaacata
      181 ttcgtagtct ttatagtata cgttgaaaca gctcattctc cttctgattc atattaaaat
      241 ggaacttgta tagttcaaag cgtccttacc tgtgattgag caaatctttt atgactaacc
      301 ttacttatta tgttatgaca aatgacaata acgcagacaa caaaaatatc aaattttctg
      361 ataaggaagt aaagttcctt cttaataatg aagtctgtag agtagcgaca gtgtcaactg
      421 gtaatattcc acatgtggtc cctgtttcct atatatttat agacaatttg ttcttctttg
      481 caacagatta caatacgagg aaatataaaa atctcaaaaa gagtaagaat gtggcacttg
      541 taattgatat ttacgattct acgaataata gagctgtggt tattcaggga tcgggggaat
      601 ttattgaaag aggtgaagat ttcaaaaaaa tgtattacat tttttatcgt aaatttgagt
      661 gggtaagaca agaaccctgg aatgaaggag aagctccatt tgtcgtggta aaaccattta
      721 ggaaaataag ctggggttta gagtaataat ttttaagcgt aaaaagtggg aggagattgt
      781 ttatcaaacg gtaaaaaatt tctcctcttg caaaattaac tcgtttataa tgcctcatcc
      841 cagattcttg ttggccacag aaataatttt aatgctaaaa attaaagaat ttgaacaaca
      901 atcagatatt atgtttccca ttctatctcc agatggtcac aaatgaagta tcccattaat
      961 tgcagtaggg aatgacaagt gaaattgaac cttaaagaag actctgaaca atggagagat
     1021 gggcaagaat attggcaatc ttatgactag cgacacatga accgactaag ggattattgg
     1081 ctagattaat ttgaagacat ttgtccattt ttgaatctca aaaatggtat catcctctgt
     1141 atcctaatgt catttcatgg caggacctgc tatgttcttt ggcttcatgc tctccatcct
     1201 ttttgtctat atcgaaaacg atattgcagg tatagcatcg aatgagtcta accaagtcta
     1261 atgtatttca tactgaactt catataaata tagaggagtt tcatctgggt cagtgaaaaa
     1321 ggcgatacca actagtcgtc cttcaacaac agttggttgg atattacctg ttacgctatc
     1381 tagcaacttt ctaatgtgta ggagcgagta ccaaatacaa agcatatttt aacttatttt
     1441 atggtaaact ggtaaaaatt ggaatttctg ttctttaaat atatgttttt attatttcat
     1501 tacgcacatc atcttgatgg atggggacaa gatatgtgac tcgcgtagta ctactgccta
     1561 caagagagga aagacatttg aagattgtaa acaagaagca gtaagaaata tccaattatt
     1621 ctctaaagag atacaagata ctggtgaaat ctcatggagc cgtatccttg aaattgcaaa
     1681 ccatgacgaa ctggtttaca aactaagctt aaagtttctt agactacaag gatatgacat
     1741 tggtaacaat aagacaccca gagttacacg atcgagcaaa actgaacctc aactgccata
     1801 ataatgcaag ccataacgat agttattcta attgcacttt catcggctat attaatatca
     1861 tatgcaattt ccgtgctcag aaccacgaac ttatcagtct cctcatttta tactagtagt
     1921 attagtgatt ccaagggcga tgctaaactc atcgcgcttt ataaatcaca aataattcct
     1981 gaagtcagag atttccatga tattctcgca gctaatgtca aaagaacaca tgataataaa
     2041 ttagtactat cactagacct tgcaggagac ccaaacaaga atcaaaagta tgaaactgtg
     2101 tatctatggg tcatcaacta taccgactcg ttaactggta atactcgatt ctatacagtc
     2161 ataataccta attttccgcc agattctaac tttaagacaa aaaattggaa tttagcaatc
     2221 tttgataatg ttgctaatgc cttcattacc ccattatcaa aactcccagc catgcccatt
     2281 gataaggttg aagctataat tgaccctatt ttgctaggta acccctcatc ctttgattac
     2341 atggctagcg taatgatacg ggtaaatagt acttttctct ccaagccacc agactacctt
     2401 attgattctg ctcctgacag tgacacattc tggttgaaat ggtttgcata gtatcgttag
     2461 aatcaatttg actctcgaat tcgacatagt ttgtaaatta ataacaagga gcatcagagt
     2521 taaatcacga aacatacaaa gaatttcttg tagataagag acgaaatgaa aataaaatta
     2581 ctacttactg cgtctagcgc cttgaaggaa attatattaa agaatttaga tgaagttaat
     2641 ctaactgcag atgtt
//
LOCUS       DASSIK010000408         2216 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_387078, whole genome shotgun sequence.
ACCESSION   DASSIK010000408 DASSIK010000000
VERSION     DASSIK010000408.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2216)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2216)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2216
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_387078"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(124..1137)
                     /locus_tag="VFI64_07500"
     CDS             complement(124..1137)
                     /locus_tag="VFI64_07500"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HET7243172.1"
                     /translation="MINNNSISCIALTKTYKNFKAVDSLTMDVNQGDIFGFLGPNGAG
                     KTTTIRMLCGLLSPSAGNAKVAGLDIIKDSTTIRKIIGLLPESSGFYNWMNAEEYLLH
                     FAALYKIEGSTAMRRTRELLESVGLADRSSAPIGYYSRGMKQRLGLARSLINEPLIIF
                     LDEPTLGLDPKGQQDIQKILLELNHEKGVTIFLSSHALGEVYSLCNRMAIVDHGEMVA
                     QGGIEELRKLAGGSNGIVVSILNSEELEKKLSNLHYRFEINAGKNNKIIDVFIFEGIS
                     ESINEILDAIKKIDLQIYEVRRSEMSLEDLFFKLTGTKEYSQENTIGNNYKLEAEQSS
                     EYN"
     gene            complement(1130..1459)
                     /locus_tag="VFI64_07505"
     CDS             complement(1130..1459)
                     /locus_tag="VFI64_07505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243173.1"
                     /translation="MDNRQGIDKKLEMKYVVTVFSAVLIFGGLYFKFLYDVPDGAETT
                     NTWVSWILVIFGVIGIMISLMWRTRNPLELDDKNDRNSGRKRKKNPAEKTDISRTRSN
                     QGGPKND"
     gene            complement(1449..>2216)
                     /locus_tag="VFI64_07510"
     CDS             complement(1449..>2216)
                     /locus_tag="VFI64_07510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243174.1"
                     /translation="GIVMIVGFSLYSFMGSNPSSPKAGTKIQPVKTITLPSPISDNRS
                     PPDQKSLPISSNSSIDHGIKQSTVKPSFFNIVSMIPTSNSSLTAYSNTSQTSQEPVKS
                     RPTISTFDVYENRDTPENYYSIGFPGGAYVVHGSKPGSYIASTMPATFLVDLQDIPDD
                     TNVQLYTLTHAEPALKSSLAGYKLISTGHLKVGNNRAWDLVYIWKNSTQNLKSMKVFI
                     EGQDQAGVITFSSPIQDYTTNNSTVTSVLQSFRWLGQ"
BASE COUNT          617 a          460 c          406 g          733 t
ORIGIN      
        1 cttatctgtc aacagtagat atgcgaccag gctatagatg agggaggcag caattatcca
       61 agcgctacca cgccatgaat aaaagctgcc agaaatttcg tgacgataga gcatcatttg
      121 ttttcagtta tactctgaag attgttctgc ttccaatttg taattattac caatagtgtt
      181 ctcttgtgaa tattctttgg tccctgtgag cttgaagaac aaatcttcta aactcatttc
      241 ggatctgcgg acttcgtata tttgtaaatc aattttcttg attgcatcaa gaatttcatt
      301 tatggattca gaaattcctt caaaaataaa tacatctatg atcttattat ttttcccagc
      361 attaatttca aatctatagt ggagattcga tagttttttt tctaattctt cagaattcag
      421 gatgctaacc actattccat ttgaaccgcc agctagtttt ctgagttcct caatacctcc
      481 ttgggctacc atctctccat gatctactat tgccattcta ttacataaag aataaacttc
      541 gcctaatgca tgcgacgata ggaatatcgt aactcctttt tcatgattaa gttccaacag
      601 tattttttgt atatcttgtt gacctttcgg gtccagacct aaggttggtt catctaggaa
      661 aatgattagg ggttcgttta tcaaagatct tgcaagacca agtctctgtt tcattcctct
      721 agaatagtaa ccaatcgggg cagaagacct gtctgctagt ccgacactct ccaagagttc
      781 tcttgttctt ctcatagctg tcgatccttc aattttatac aaagcagcaa agtgtagtaa
      841 atattcttca gcattcatcc aattgtaaaa tccagaactt tcagggagca gccctataat
      901 tttccttatt gttgtactat ccttaataat atctaaacca gcaacctttg cgtttccagc
      961 actaggagat agaaggccac acaacattct aattgtagta gtcttgcctg ccccgttagg
     1021 tccaaggaat ccgaaaatgt cgccctgatt aacatccata gtcaaagagt ctactgcctt
     1081 aaaatttttg taagtctttg tgagggcaat acacgagatg ctgttattat taatcatttt
     1141 taggtccacc ttgattagat cgtgtacgtg aaatgtcggt tttttcggca ggatttttct
     1201 tcctttttct gccactattt cgatcatttt tgtcgtcgag ttctagtgga ttccttgttc
     1261 tccacattaa gctaatcatg attccgatta caccgaaaat tacaagtatc cagctaaccc
     1321 acgtattggt ggtctccgca ccatctggaa catcatacaa gaatttgaaa tacaatcctc
     1381 caaatatcag cacggcggaa aaaaccgtta caacatattt catttccaat tttttatcaa
     1441 taccttgcct attgtccaag ccatctaaag ctctgcaata ccgaagtcac cgttgaatta
     1501 ttagttgtat agtcttgaat cggactcgaa aatgttatga cccctgcttg gtcctgtcct
     1561 tcaataaata ccttcatgga ctttaaattc tgcgtagagt tcttccagat atatacaagg
     1621 tcccacgccc tattgtttcc tactttgaga tgtccggtgc taatcaattt atagccagct
     1681 aaggaagatt tcagagctgg ttccgcatga gttagggtgt atagttggac atttgtatca
     1741 tctggaatat cctggaggtc taccagaaac gtagccggca ttgtacttgc aatataacta
     1801 cccggtttgc taccatgaac tacataggca cctcccggga acccaattga gtaataattc
     1861 tcaggtgtgt ccctattttc atagacatcg aacgtagata ttgtgggccg agactttaca
     1921 ggctcttgtg aagtctgtga tgtattactg taagcagtta aactactgtt ggatgtcggg
     1981 atcatagaaa cgatgttaaa gaaggatggc ttcaccgtgc tctgcttaat accgtgatcg
     2041 attgaactat tgctagagat tggtaacgac ttttgatctg ggggtgaacg gttatcagaa
     2101 ataggtgacg gcaaggttat tgtttttact ggctgtattt ttgttccagc ttttggtgaa
     2161 gacggattag atcccataaa tgaatacaat gaaaatccta cgatcataac aatgcc
//
LOCUS       DASSIK010000409         2215 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_290935, whole genome shotgun sequence.
ACCESSION   DASSIK010000409 DASSIK010000000
VERSION     DASSIK010000409.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2215)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2215)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2215
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_290935"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            406..1020
                     /locus_tag="VFI64_07515"
     CDS             406..1020
                     /locus_tag="VFI64_07515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_process: GO:0007034 - vacuolar transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Snf7 family protein"
                     /protein_id="HET7243175.1"
                     /translation="MEHHRQFQSDLTNATQIVNKQIGRLKTLHKKFSSMDVDFRKQIG
                     ENIKAGNNARAKVLATELANIRRVQHTTQNMGIALEVVVLRCSTINEFAMIMDTITPT
                     VQMIKDIQKDISKVVPTANEVIEDVTKTTSHVLMNYNVNADLGKISTPLDEDSLGILN
                     EVEELLEEETKSRLPDVPENISIEKKVKEPSEMLLEQNRVLVET"
     gene            1129..>2215
                     /locus_tag="VFI64_07520"
     CDS             1129..>2215
                     /locus_tag="VFI64_07520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP cone domain-containing protein"
                     /protein_id="HET7243176.1"
                     /translation="MSQDSLSQSEIRPGGVLQTASRRVRMIFSVMASPNRIDILRILN
                     SKGPLTYSELKSLAGFKSKKESGKFAYHLRKLLRQSLVALNKAERRYTITNLGKLVLS
                     LARQIEERSIIESGKMYVRTSRHSIEEFNSNRIIQSLVREANMPLEQAHKITEEVENK
                     VYKFQTAYLTSSLIRETVNSVLIEHGFEEYRTKLARLGLPTSDVVELFNGSTNGRNEI
                     DSILSEASVAVFSENLLFNTLPKDITDMHLAGELNISNSGLWGLIPDTIFYDSKDLVE
                     NGLDSKGKYLNVSRILPIKKLEDLTTTFPRMVSLLSREAYGEVVFDNLIGSIFNKAQY
                     NFKDVESLFTATLLASSIARSYLPGGYP"
BASE COUNT          744 a          414 c          439 g          618 t
ORIGIN      
        1 gaggatcttg attcttatgc atgggtggtc ttcagtgtag acaacacgcc aataagggca
       61 tcagggtttt tgcctgggat taaagtgcca gctgatttac cgattggttc taaggtcaaa
      121 gttaccggtt atgataagaa acatggtctc tcgcttcaga agctaccgtg agactaacag
      181 aaaaaagcaa ccgaaagttt gtctactagt tttcaaacgt aagagctaca atattatatt
      241 atcataatat ttctttgttg acgtcgttcc gtacaaacaa atagccacta tacaaggatg
      301 atattgcgaa ttatactaga atttctttac atcagcttta tgatactttc tggttcatac
      361 actctaacaa taatccttac attctatccg taacgatctt tatcaatgga gcaccatagg
      421 caattccaga gtgatctgac aaacgcaacc caaatcgtaa acaagcaaat cggtaggcta
      481 aagacgctcc acaaaaagtt ttcctcaatg gatgtagatt tcaggaaaca aataggtgaa
      541 aacatcaaag ccggcaataa tgcgcgtgca aaggtgttag caactgaatt ggcaaatatc
      601 aggagggttc aacacactac tcagaatatg ggtattgccc ttgaagttgt ggttctccgt
      661 tgttctacta taaatgaatt tgcaatgata atggacacga ttacaccaac tgtccagatg
      721 attaaggata ttcaaaaaga catttccaaa gttgttccta cagcaaacga ggttattgaa
      781 gatgttacga agacgacgtc ccatgtccta atgaactaca atgttaatgc tgatttaggt
      841 aaaatctcga ctcccctgga tgaagattct ttaggcattc taaacgaagt ggaagaactt
      901 ctggaggaag agacaaagtc aagactccct gacgtcccag agaatattag tattgaaaag
      961 aaggtaaaag aaccatctga aatgctactt gaacagaata gggtattggt agaaacctga
     1021 tcaaaaatga ggtacaagct gagatgtagg ttcctttata ccattggtaa agaaatattt
     1081 acaaagtagt tttaattagt taattagaat aacggcagcg aggatcattt gagtcaggat
     1141 tctttatctc aatcagaaat tagacccggt ggagttcttc aaactgcatc aagaagggta
     1201 aggatgattt tttctgtcat ggcaagtcca aacagaattg atattcttcg aattctaaat
     1261 tctaaaggcc ctttgaccta ctccgagtta aaatctcttg caggttttaa gtcgaaaaag
     1321 gagtctggga aatttgcata tcatctaaga aaactgctaa gacaatcgct tgttgcatta
     1381 aataaggcag aaagaagata cacaataacg aatttaggaa aacttgtact tagtcttgcc
     1441 agacaaatcg aagagaggtc gataatagag agtggaaaga tgtatgtaag aacatcaaga
     1501 cattctattg aagaattcaa ttcaaacagg atcattcaat ccctagtcag ggaagcgaat
     1561 atgccgctcg aacaggctca caaaattact gaagaggtgg aaaacaaggt ctacaaattc
     1621 cagactgctt acctgacttc atctctcata agagaaactg tgaattccgt actgattgaa
     1681 catggttttg aagagtatag aacaaaactt gctcgacttg gtctaccgac ttccgacgtg
     1741 gtggagctat ttaatggtag tactaacggc cgaaacgaaa tcgacagcat cctttcggag
     1801 gcttcagtag cggttttttc tgaaaacctt ctctttaaca ctctacctaa agacataact
     1861 gacatgcatc ttgcagggga actaaatatc tccaacagtg gtctttgggg actcattcca
     1921 gatactatat tctatgattc taaggatcta gttgaaaatg gactagattc caagggcaaa
     1981 tacttgaacg tttcacggat acttcctatc aaaaaattag aagatttaac tacaaccttt
     2041 ccaagaatgg tatcacttct ttccagagag gcttatggcg aggtagtatt cgataatcta
     2101 attggatcaa ttttcaacaa agctcaatac aacttcaaag atgtagaatc attattcaca
     2161 gccacgttgc ttgcatcctc tattgccaga tcctatttgc cagggggata ccctg
//
LOCUS       DASSIK010000410         3221 bp    DNA     linear   ENV 31-JAN-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1085
            k141_388075, whole genome shotgun sequence.
ACCESSION   DASSIK010000410 DASSIK010000000
VERSION     DASSIK010000410.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37963248
            Sequence Read Archive: SRR25158198
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3221)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3221)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/10/2024 03:41:30
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,510
            CDSs (total)                      :: 1,487
            Genes (coding)                    :: 1,485
            CDSs (with protein)               :: 1,485
            Genes (RNA)                       :: 23
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 20
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 2
            CDSs (without protein)            :: 2
            Pseudo Genes (ambiguous residues) :: 0 of 2
            Pseudo Genes (frameshifted)       :: 0 of 2
            Pseudo Genes (incomplete)         :: 0 of 2
            Pseudo Genes (internal stop)      :: 2 of 2
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3221
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_388075"
                     /isolate="SMAG_U1085"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="42.43138889 N 128.1169444 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..565
                     /locus_tag="VFI64_07525"
     CDS             <1..565
                     /locus_tag="VFI64_07525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243177.1"
                     /translation="FAFGAKGTITQSKVSGNICNHPDCGPDFFNQVQGVAILVIEAAS
                     GSSISHSEISNNDIGIIVAGNSGCCKITNNKLKDNRFFGITIVDGNHTSSHDKISGGN
                     VGVAAIAIDADTTATLVHDKITSTTTPTQELTCCGFTAEIITIPPNSFQATQVKSSQQ
                     TNEIQEFVKKKFGGEDINISSSAVNPF"
     gene            complement(643..1023)
                     /locus_tag="VFI64_07530"
     CDS             complement(643..1023)
                     /locus_tag="VFI64_07530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243178.1"
                     /translation="MVPTAPTNPNSNSAVDTAIKAGVHVTVDKNTGNIVFSADPSSGV
                     EITAMTLERLDQEKKMYETGFFIGYVAGFEHFQKGGKFADLIAGGPLRPLSDNPISDM
                     GVFQGKMSGWRAADLAQSIKIKTK"
     gene            1013..1138
                     /locus_tag="VFI64_07535"
     CDS             1013..1138
                     /locus_tag="VFI64_07535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243179.1"
                     /translation="MGTIGTSAAITIKGGISKQIQNTKLGDNIKEMVLLRILFDR"
     gene            1438..1629
                     /locus_tag="VFI64_07540"
     CDS             1438..1629
                     /locus_tag="VFI64_07540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243180.1"
                     /translation="MRIIIAIIVAVAIVGNASMSSLSPSTIDISKIDCEKVAYSADWG
                     LDKTLEVMRHCTGADKEVH"
     gene            2161..2544
                     /locus_tag="VFI64_07545"
     CDS             2161..2544
                     /locus_tag="VFI64_07545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243181.1"
                     /translation="MKHIRTSISVLLLTTILTITVTTSIQPVFAPRGCNGCAEFRILT
                     GEFVQNVINRQPSPNSDNVGQFRILTAQFERDVINAVINDQPSIIKVLAGKYSEESMP
                     LSLGEPRLLDDYLQAVLRIFCESCI"
     gene            complement(2569..3129)
                     /locus_tag="VFI64_07550"
     CDS             complement(2569..3129)
                     /locus_tag="VFI64_07550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HET7243182.1"
                     /translation="MKSPVIFIIVAVIFGSVYSSSSIVEGVIDGGVSCSPQGGGKTYC
                     CASVKDKDNIYGYTTYCTTCDDTNPPSNCTPREKPMAVLNPGRDLSNALESSVLEGAT
                     TGQWANISIIPEGILQTENNLTFSQADISSNDDSNNTMALDQSDLVSDTVKKPIRTVD
                     EGAEGQDESQTTEEPSDEPVDEDEND"
BASE COUNT          945 a          670 c          601 g         1005 t
ORIGIN      
        1 attcgcgttc ggcgcaaaag gaacaattac acaaagtaaa gttagtggga atatctgtaa
       61 ccatcctgat tgcggtccag atttctttaa tcaagttcaa ggcgttgcaa tacttgttat
      121 tgaggccgca tcgggttcat caatctccca tagcgaaata tcaaataacg atattggaat
      181 tatcgtggct ggaaatagtg gttgttgtaa aataactaac aataaattaa aagacaaccg
      241 attctttggc attactatag ttgatggcaa tcatacgagt tctcatgaca aaatatctgg
      301 tggaaatgtc ggcgtagcag caatagccat tgatgctgat acaactgcga ccctagttca
      361 tgataaaata actagtacga ctactcccac acaggaactg acatgctgtg gattcactgc
      421 tgaaataatc actattcccc ctaactcatt ccaagctaca caagttaaat cttctcaaca
      481 gaccaatgaa atccaagaat ttgtaaagaa aaagttcgga ggcgaagata tcaatatctc
      541 gagttcggct gtcaatccat tttagcatct ttgcatgaaa tccaactagg aataagatat
      601 tcttgtcata acttcccaag tcagtgcctg aaacctagag acttatttgg ttttaatttt
      661 gatgctctgt gccaagtctg ctgcgcgcca tccagacatt ttaccttgaa atacacccat
      721 atcacttatt ggattatccg atagaggtct caaaggtccc ccggctataa ggtctgcaaa
      781 ctttcctcct ttttgaaaat gctcgaaccc cgcgacatat ccaatgaaaa acccagtctc
      841 atacattttc ttctcttgat ccaacctttc aagggtcata gcagttattt ccacacctga
      901 ggacgggtct gcgctgaaca cgatatttcc agtattctta tctacagtca cgtgaacacc
      961 tgcttttatg gcagtatcta ccgcggaatt tgaatttgga tttgtgggag cagtgggaac
     1021 cattgggaca tccgctgcaa ttacaattaa gggcggaata agtaaacaaa tacaaaacac
     1081 caaactaggg gacaatatca aagaaatggt attgcttcgc attctatttg atcgttaggt
     1141 taactatcaa ggaattattt attaagtatt tatcaaatca taaaactggc tctcctgcaa
     1201 agacattctt aacgcacttg tcagttctga aaaatccttg tcctctaatt cggatgtagg
     1261 attactgata gaactatctc tattaagatt atctcatttt agttactgtt tccaatattc
     1321 gacacataat taatctagac tatctatcac ataactgcag ataaatcacc tagagtaatg
     1381 atattagtac attttttcag agaactatat taaggaacac ttgaaattaa aaatatcgtg
     1441 agaatcataa tcgcgataat agttgcggtg gcaatagtag gaaatgcttc aatgtctagt
     1501 ttatctccat ctacgattga catcagcaaa atagattgtg agaaggttgc atactccgcc
     1561 gattggggac ttgataagac tctggaagta atgaggcatt gtaccggcgc ggataaggaa
     1621 gtacattaag gcgatagtct aggaattttc gcgtcacgtt tatctaattg tttgccgata
     1681 ttattgtgct cgttaggagg atgtatggtt tcgaccaatg ttctacttac gggctctggg
     1741 cttgtttgtt gtgtggcatc caattcccgc atcaaacaag tccaatatgt tttttcaaat
     1801 atgatctgat attctaaaac atcctagtta ccaattttca ttattatact tgtcattgtg
     1861 ctttatgtga taatgtattt tattttctat ttccgtgttg gatcttttat cgcactttgt
     1921 gcacacaaca ggttcgctat ctacttcgta tgtctgttcc cacatattca tctaacgcag
     1981 gcatctgtat taaacccgcg taaagccaga ctattattct gatggtccat tcttctaatg
     2041 tttcaactga accggtagta ttgtctaaat gccgcagcgg tgcacgaaaa atgatctaca
     2101 ttcttgatac cagtacatca agttcgaaag cctattagcg ataactctct aatggctata
     2161 ttgaagcata ttaggacatc gatatcggta ctcctactaa ctacgatatt aacgataaca
     2221 gtaacaacta gtattcagcc agtatttgct cctagaggtt gtaatggttg tgctgaattt
     2281 agaatactga ctggtgaatt cgttcagaat gttataaaca ggcaaccatc accaaactct
     2341 gataatgtag gtcaatttag aattttgaca gcccaattcg aaagagacgt tattaacgcc
     2401 gtaattaatg accagccttc cataattaaa gttctggcag gtaaatattc ggaagaatct
     2461 atgccgttat cccttggaga accaaggttg ttagatgact atctacaagc agtattaagg
     2521 attttctgcg aatcatgtat ctaagccatt cagcaatgct atgaactcct aatcgttctc
     2581 gtcttcatct acgggctcat cagacggttc ttcagtggtc tgactttcat cttgtccttc
     2641 tgccccctca tccaccgttc ttatcggttt ttttaccgta tctgacacta gatctgattg
     2701 atccagtgcc atggtattgt tgctatcgtc attactactg atatcagcct gagaaaaagt
     2761 taagttattt tctgtttgca atattccttc gggaattatg gagatgtttg cccactgacc
     2821 tgttgttgcc ccttcaagaa cgctgctctc caaagcattc gacaggtctc tcccaggatt
     2881 taacacagcc attggttttt cgcggggtgt gcaattgcta gggggatttg tgtcatcaca
     2941 agttgtgcag taggtggtat acccgtaaat gttgtccttg tccttcacac tcgcacaaca
     3001 ataggtcttc ccgccaccct ggggagagca actaactcct ccgtcgatta ctccttccac
     3061 tatagaagat gaactataaa ctgatccgaa aatgactgct acaattatga aaataacagg
     3121 tgatttcaca gtcagtctat gccctggtcc tataaaaagc agcacggatt agaatctttt
     3181 gtaactattt cactttgtac atcttacaag cgagtaggag c
//
