LOCUS       DASUMD010000001         3295 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_774620, whole genome shotgun sequence.
ACCESSION   DASUMD010000001 DASUMD010000000
VERSION     DASUMD010000001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3295)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3295)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3295
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_774620"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1398)
                     /locus_tag="VFX26_00005"
     CDS             complement(<1..1398)
                     /locus_tag="VFX26_00005"
                     /inference="COORDINATES: protein motif:HMM:NF024808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEX5572887.1"
                     /translation="MRKTEYIGRDKDVKTIYGRTMTHKYFGKDFKIILVLALVAVVLS
                     ASSLSPLRMVQGQQPNQVTITAIVAEPKERWDALFADALTKLRENHPNMTIDIDYSVL
                     PYADTRKQILTAMAGRTPIDLISVDQIWLGEFAEGGFLSDLTDLTNSWNRSSDWYKTN
                     WDGGIYNGKVYGIWAWTDVRSMWYWKDLLNQSDVNPESLKTWAGYLEAAKKLENSTKG
                     KGIEAMHLVGASHSPDMWYPYLWMQGGEIVKQKTGHPEKGTYWFPSYNSTEGVKALQF
                     LKDQVSAGIKPQINHFWGQEFADKKFAVMLEGSWLLGHFNRTEWNSLDKNVGMIPMFP
                     VPKSGDTTATMMGGWMLGIPSTSSNKELSWELLKIMVQPDVLAPMLEEYAYLPTQKPI
                     AEGQYSGQLANTIPYYKELISMLSLGHSRPSIAEYPQIADNIRQAIDEVYLGAKEPKQ
                     ALDDAAKKSAEVLGWS"
     gene            1613..2785
                     /locus_tag="VFX26_00010"
     CDS             1613..2785
                     /locus_tag="VFX26_00010"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX5572888.1"
                     /translation="MQIKSIQTEGIILTTLSIRNLTKTYGHLIALENFSLEISSGEFM
                     VLLGPSGCGKTTVLRCIAGLTDITSGEIYIGGEFVNKLPPKDRDVAMVFQNYSLYPHM
                     NVYDNIAFPLKMRRVQKTKINESVQKIAKLLDIDNLLERKPKEISGGQMQRVALGRAL
                     VREPKIFLMDEPLSNLDAKLRTEMRVEIKKLQEKVGITTLYITHDQAEAMSMADNVGI
                     MDSGKLLQLDSPQKVYTEPANRFVAGFIGVPPMNFLKFKIIRESSLFLKFDGNNSYQQ
                     DNRSIIKIPDTLAGNLNNILEETIMLGIRPKDIILLGDGEDFDGLILKGETAYVESLG
                     DDSIAEVKVGESLLKISNVTSRNETPIVGKQAKIGIKYDKIKLFTNSGERIHIKLI"
     gene            2900..>3295
                     /locus_tag="VFX26_00015"
     CDS             2900..>3295
                     /locus_tag="VFX26_00015"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX5572889.1"
                     /translation="MSTVSRISAVTLLIKDMETSCSFYSKIPGFKLTFGGYHHDFFTT
                     YEIGQNTSVYLNLELFKLNDHSKYEHSKNFVKIILHVNDVDKLYHYFKNDRIISNLIS
                     FENEPTDASWGERYFHIRDPDGYLLSFAQL"
BASE COUNT         1028 a          622 c          621 g         1024 t
ORIGIN      
        1 agaccaacca agtacttctg cagatttctt ggcagcatca tctaatgctt gttttggttc
       61 ctttgctcca agataaactt catcgattgc ctgtcttatg ttatcagcaa tttgaggata
      121 ttcagctatg ctgggtctac tgtgccctaa tgataacatc gaaatgagtt ccttgtaata
      181 tggtatggta ttagcaagct ggcctgaata ttgcccttcg gcgattggtt tttgagttgg
      241 gagatatgcg tattcttcca acattggtgc aagcacatct ggttgaacca ttattttgag
      301 caattcccat gagagttcct tatttgaaga agtactaggt atgccgagca tccaaccgcc
      361 catcattgtc gctgtcgtgt caccagattt aggaactgga aacatcggaa tcatgccaac
      421 gtttttgtca agactattcc attcagtacg attaaagtgt cctagtaacc atgaaccttc
      481 caacataaca gcaaatttct tgtctgcaaa ctcctggccc caaaaatgat ttatttgagg
      541 tttaattcct gcacttactt gatccttcaa aaactggagg gcttttacac cttcagtact
      601 gttgtaggat ggaaaccaat aggtaccttt ctcaggatgg ccagtttttt gtttgactat
      661 ctccccgcct tgcatccata gataagggta ccacatatca ggagaatggc ttgcccccac
      721 tagatgcatg gcctcaattc cttttccttt agtcgagttt tcaagcttct ttgctgcctc
      781 aaggtagcca gcccatgttt taagcgattc aggatttaca tcactttggt ttaggaggtc
      841 tttccagtac cacatagacc tcacatctgt ccaagcccaa atcccgtata ctttaccatt
      901 gtaaatacca ccatcccaat tagtcttata ccaatcagaa gatcgattcc atgaatttgt
      961 taaatcggta agatcggata gaaacccacc ttcagcaaac tcaccaagcc atatctgatc
     1021 aactgaaata agatcaattg gggtccttcc agccattgca gttagaattt gttttcgcgt
     1081 atctgcatat ggtaacacac tataatcaat gtctatagtc atgtttggat gattttctct
     1141 taatttagtt aatgcatcag caaataaagc atcccatctt tcttttggct ctgccactat
     1201 cgcggtaatt gtaacttggt taggttgttg tccttgaacc attctaagtg gtgacaagct
     1261 tgatgcactc aaaacaacgg ctactaaagc caatactaaa ataattttaa aatccttgcc
     1321 gaagtattta tgagtcatag ttctgccgta tattgttttt acatctttat cgcgtccaat
     1381 atactcggtt tttctcatta tccatattta gaacggctac ttttaagtat tggcacatgt
     1441 gtgaaccgaa atatgctgtc atgttgctat atgtcaagaa tgtaatctgc cggcactgga
     1501 acatacattc gggttaaccg ttgtcaccat cagtgataaa aataattaat tgaagatttt
     1561 tctagtggac agactactat acttccaacc agacaattaa aattaatatg atatgcaaat
     1621 aaagtcaatt caaacagaag ggattatttt gacaactctt agcataagaa atttaactaa
     1681 aacgtatggg cacttgattg cattagaaaa cttttcgcta gaaataagct ctggtgagtt
     1741 tatggtgcta cttggacctt caggatgtgg taagacaacg gtactgaggt gcattgcggg
     1801 cttgactgat attactagtg gagagatcta tattggaggg gaattcgtga acaaacttcc
     1861 cccgaaagat cgtgatgtgg cgatggtttt tcaaaactat tcactttatc ctcacatgaa
     1921 tgtgtatgat aacattgctt ttccgttaaa aatgagaaga gtacaaaaaa ccaagataaa
     1981 tgaaagtgtt caaaaaattg caaaacttct tgacatagat aatttacttg aaaggaaacc
     2041 aaaggaaatt agcggcggtc aaatgcagag ggtggctctg ggtagggccc tggttagaga
     2101 accaaaaatc ttcttgatgg atgaaccact tagtaatctt gatgccaaat tgcgcactga
     2161 aatgagggtg gagataaaga aattacaaga aaaagtagga ataactacac tttacattac
     2221 gcatgatcag gctgaggcaa tgagcatggc tgacaatgtt ggtataatgg attcgggaaa
     2281 attacttcaa ctagattcgc cacagaaagt atacactgag cctgctaatc gatttgtcgc
     2341 tggtttcatc ggcgttcccc ccatgaattt tctaaaattt aagataatca gagaaagttc
     2401 attgttcctc aaatttgacg gtaataattc ttatcaacaa gataacaggt ctataatcaa
     2461 aatccctgat acacttgcag ggaatctaaa caatattctt gaggaaacaa taatgctagg
     2521 gataagacca aaggacatca ttctgttagg agatggtgag gattttgatg gtttaatact
     2581 aaaaggagaa actgcatatg tcgagtcgct tggggacgac tcaattgcgg aagttaaagt
     2641 tggagaaagc ttgctcaaaa tatctaacgt aacttccaga aatgagactc ctattgttgg
     2701 aaaacaagca aagattggta taaagtatga caaaataaag ttatttacca attcaggtga
     2761 aaggattcat attaagttaa tatgattaac atcaaataac tttcgtccca tttggcttaa
     2821 cctggttata atctgtcttg ttaccattat aagaagtact taataatgat agattgatcg
     2881 ttacattgat ctactgatta tgtcgacggt gtctagaatt tctgcagtaa cgttattaat
     2941 taaggacatg gagacatcgt gtagttttta ttccaaaata ccaggcttca aactaacctt
     3001 tggtggatat caccacgatt ttttcaccac ctatgaaatc ggtcaaaata cttctgtcta
     3061 tctaaatctt gaattattca agctaaatga ccatagcaaa tatgaacact caaaaaattt
     3121 cgtaaaaatt atcctacatg tgaatgatgt ggataaatta tatcattatt tcaaaaacga
     3181 tcgaatcatt tctaacttga tatcatttga aaatgaacca actgatgcgt cttgggggga
     3241 gagatatttc cacatacggg atccagacgg ttatcttctt tcatttgctc aattg
//
LOCUS       DASUMD010000002         2651 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1106433, whole genome shotgun sequence.
ACCESSION   DASUMD010000002 DASUMD010000000
VERSION     DASUMD010000002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2651)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2651)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2651
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1106433"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(403..1188)
                     /locus_tag="VFX26_00020"
     CDS             complement(403..1188)
                     /locus_tag="VFX26_00020"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: protein motif:HMM:NF010587.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008795 - NAD+ synthase activity [Evidence
                     IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HEX5572890.1"
                     /translation="MSQDFISLNYEKIVHQITKFILEQVKSRKKNGVVIGISGGLDSS
                     VCLVLASKALGKNRIFGLIMPERGQTPQKDIDNARDLVYKLRIKYKEIHFERAKKILL
                     SNLPNDKLSGGNLSARLRMALLYHFAGKSNLLVLGTSDKSELMIGYFTKFGDGGADLL
                     PLGGLYKSQVKILGKKLGLSEQIINQPSSPRFWKGHVAEKELGLAYHEIDAILQYYVD
                     NDLDSCNLSNKKKKLVTDMIRKSRHKREQIPVCNLPEFDFYTV"
     gene            complement(1191..2540)
                     /locus_tag="VFX26_00025"
     CDS             complement(1191..2540)
                     /locus_tag="VFX26_00025"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEX5572891.1"
                     /translation="MTGMGSNPFKKCINPSCNLTYEINNNTLVCKCGSFLDIIYQNNF
                     SRELIQVFYQRRNHGENIYNESGVWRFRELINFAHLDTEDFEQCSKILVSLDGSEGRQ
                     SKPYKMKKVSEYCLIDYDSLLLQPEGYNPSGSFKDNGMSTAVTHAKMINMNRIICAST
                     GNTSASAAMYAANENIECEVFVPKGEIAPGKLGQAFQFGAQVIEIDGNFDDALSYSLN
                     EAQQLGAYTVNSINPFRIEGQKTIVYRALEYLDWNPPDWIVYPGGALGNTSSCGKALI
                     ELYNLGWIKKIPRLLVVNAEGANTLYELTNGLFGGKKLTWNSGSPDMSLIKEYYNEKD
                     KKGIKPHTKATAIQIGKPANLIKALRSIHFTNGIVTQVSDKEMSDGMALVGLNGFDCE
                     MASGAVPAGIRKLRKQEIIKKDDVVVGILTGKQKDPRLSIDYHSNQNNTFSKPPVAK"
BASE COUNT          743 a          535 c          455 g          918 t
ORIGIN      
        1 gacaccatca gctgacttcg ataaagtata cagctactcg agaataaaaa gcacatacgt
       61 aggaggagga atatgggata ttggcgaaaa ggcctccaaa gcgatgtgga aggcaacaat
      121 catacttctt gcttcacttg cctcaatggc tctactgata ctgttccttc cttagataag
      181 tactaggtct tattgccttt tttttgacaa tggttgctta ttttttttag tatacttata
      241 ccaaaaaaaa gctgcaaggc ctaaatttgc aattgaagtg aacagaaata ttggagaatt
      301 tatctgtata aataccacaa gtccgtaaat ccctactaca gttgcaacga tggaaattat
      361 ctttaactga ctactagata ttggcaacct tattctaagg ttttaaacag tataaaagtc
      421 aaactctggc aggttacata ctggtatctg ttccctcttg tgtcgagatt ttctaatcat
      481 atcggttacc aattttttct tcttgttgct caaattacag ctatccaaat cattgtcaac
      541 atagtattgt aaaattgcat ctatctcatg atacgcaagt ccaagttctt tttctgctac
      601 atgtcccttc caaaatctgg gactgcttgg ctgattaata atttgttcag atagtcccaa
      661 tttttttccc aatatcttga cttgactctt gtacaatcca ccaagaggaa gtagatcagc
      721 tccgccatca ccaaatttgg taaaataacc aatcatcagt tcactcttgt ctgaggttcc
      781 tagtaccaat agattgcttt taccagcaaa gtggtatagc aaggccattc taagtcttgc
      841 tgaaagattc ccgccagaga gtttgtcatt tggcaagtta cttaacaata ttttttttgc
      901 gcgttcgaaa tggatttcct tatacttaat tctcaacttg tataccagat cacgagcatt
      961 gtcaatgtct ttttgaggtg tctgtcctct ttctggcatg ataagaccaa atatcctatt
     1021 ctttcctagt gctttggaag ctagtacaag gcacacggaa gaatcgagac caccacttat
     1081 tcctataacc acgccatttt tctttcttga ttttacttgt tccaaaatga attttgtaat
     1141 ttgatgaact attttctcgt aatttaggga tataaaatcc tgagacattc ctatttcgct
     1201 actggaggtt ttgaaaatgt attgttttga ttcgaatgat aatcaataga taatctggga
     1261 tccttttgtt tgccagtcaa tattcccact actacgtcgt ccttttttat tatctcctgt
     1321 ttcctcagtt ttcttattcc tgccggtaca gcacctgagg ccatctcgca gtcaaagccg
     1381 ttcaacccaa ctaatgccat tccatcgctc atttccttat cggaaacttg cgtaactatg
     1441 ccattagtaa agtgtatgga tcttaatgcc ttgatcaaat ttgctggttt gcctatttgt
     1501 attgcggtgg ctttagtatg tggtttgata cccttcttgt ctttttcatt atagtattct
     1561 ttaatcaagc tcatgtccgg actcccacta ttccaagtta gtttcttgcc tccaaacaaa
     1621 ccatttgtta attcatataa tgtgtttgct ccttctgcat ttaccaccag taatcttgga
     1681 atttttttta tccaacctag attgtatagt tcaattaggg cctttccgca actagaagta
     1741 tttcctaagg caccacccgg ataaacgatc caatcaggtg gattccaatc caggtattct
     1801 agagctctat atacgattgt tttttgtcct tcaatcctaa atggattaat ggagtttacc
     1861 gtgtacgcac ctaattgttg ggcttcattc aatgaatatg ataaggcatc gtcaaaattg
     1921 ccatcaattt caattacttg tgcgccaaat tggaatgctt gaccaagttt gccaggtgca
     1981 atctctccct ttggtacaaa aacttcacat tcaatatttt catttgcggc atacattgca
     2041 gcagatgctg atgtatttcc agtggaggca cagatgattc tattcatgtt tatcattttg
     2101 gcatgagtta cggcggttga cattccatta tccttaaaag agccactggg attgtaacct
     2161 tctggttgca ataaaagcga atcgtaatca attaggcaat attctgatac ttttttcatt
     2221 ttgtagggct ttgattgcct cccttcagac ccatcaagtg aaaccaggat ctttgagcat
     2281 tgttcaaaat cttctgtatc caaatgggca aaattaatta attctcgaaa tctccatact
     2341 ccactttcgt tgtaaatatt ttcaccatgg tttctacgtt ggtagaatac ctggattaat
     2401 tcccgcgaaa aattattttg ataaataata tccaaaaatg agccgcattt acagacgagt
     2461 gtattgttat taatttcata tgtgaggtta catgaggggt taatgcattt cttaaatgga
     2521 ttgcttccca taccagtcat agattatttc ctaaaaaaaa gatatttaga cgtttacggt
     2581 ttgttgcagc gtgaacagaa ggaattcaga taggcggaaa agctccgcat gtatagcaat
     2641 atttggggta c
//
LOCUS       DASUMD010000003         2941 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_222014, whole genome shotgun sequence.
ACCESSION   DASUMD010000003 DASUMD010000000
VERSION     DASUMD010000003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2941)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2941)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2941
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222014"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            120..554
                     /locus_tag="VFX26_00030"
     CDS             120..554
                     /locus_tag="VFX26_00030"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEX5572892.1"
                     /translation="MKQISDIMSTKLETIQTSDSAKDAAKKMLDKNVSSLVVVDESGQ
                     SIGIITERDITRGVCTHDILSKEFMIHHLMTSPLTTINSNSSVEMAANLMLQKKVRHL
                     IVREGNKTVGIVTATNFIDYLNEKLDPIDPNAKVLKTLKDEI"
     gene            complement(666..1085)
                     /locus_tag="VFX26_00035"
     CDS             complement(666..1085)
                     /locus_tag="VFX26_00035"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX5572893.1"
                     /translation="MSNIERIVSIVDDEIHIAKLFHEALLENINGISVFSFVDPVIAF
                     QHFTENHESYALVISDLRMPSLNGLELLKKVKTLNPKVRTILMSAYNFEEEELYQKYM
                     KEAVINSTIEKPVTMNRLYQRVRDELSVYHIGIREKK"
     gene            1357..1755
                     /locus_tag="VFX26_00040"
     CDS             1357..1755
                     /locus_tag="VFX26_00040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572894.1"
                     /translation="MLKIFFIFLLVLILPIFQAHATTYTTVPNPPAPSELIARCDTGN
                     YSSTACDIAEEMISLLPSDIATYGLADQDSKVIQQTLELLDNVTLNKVLQSITTEELT
                     KLRQKLTNQTFDNIVPEPLRERLLNRLSLN"
     gene            1965..2459
                     /locus_tag="VFX26_00045"
     CDS             1965..2459
                     /locus_tag="VFX26_00045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572895.1"
                     /translation="MKDKPIFCRICGKKLKPKGELRNCPKCDADLTDYTRQPSSSVEN
                     LSYKNPGTTALLAFIGGMIALPGIGHIYVGKVGMGVGILIGGFILYALTFSIIISVTS
                     ARAYEAQYSPTGNASPLPIDMIVANLVLLIGYTVLFIYQIITATRLANKFNRLAKTTG
                     TNPW"
BASE COUNT         1021 a          497 c          479 g          944 t
ORIGIN      
        1 ccgcaattga atatctgtta gtaaccaggc atgaaagcta tctgtctttg cgaagtattt
       61 aacaaattat actgtttgtt tggaatcaaa atatattaaa ctttgatgtt acgaagtcta
      121 tgaaacagat aagcgatatt atgtcaacga aattagagac cattcaaaca tctgatagtg
      181 caaaggatgc tgcaaagaag atgctggaca aaaacgtaag ctcactcgta gtagtcgatg
      241 aaagtggcca atcaatagga atcattactg agcgtgatat cacaaggggt gtttgtaccc
      301 atgatatact aagcaaggaa tttatgatac atcatcttat gacctcaccg ttaacaacaa
      361 ttaattctaa ttcgtctgta gaaatggcag caaatctaat gttacagaag aaggtaagac
      421 atcttattgt cagggaagga aacaagactg taggtatagt aactgcgact aactttatcg
      481 attatttaaa cgaaaaattg gatcctattg atccgaacgc aaaggtgctt aaaacattga
      541 aagatgaaat atgaagtgca aagtatgatt gcgattcaaa aagtaagagc aatcgactat
      601 tagattagtg tttatggttc atcaatagct cctaatctaa aaatacggat cagacttatc
      661 aaatcttatt ttttttctct tatgcctata tgataaacac tcaattcatc ccttactctt
      721 tggtatagtc tattcatcgt gacaggcttc tcaatagttg agtttatcac agcttctttc
      781 atgtatttct ggtacaattc ttcttcctca aaattgtaag cactcatcaa tatcgttctt
      841 actttaggat ttaacgtctt tacttttttg agcaattcta aaccatttag acttggcatt
      901 cttaaatcag aaataactaa ggcatagctc tcatggttct cagtaaagtg ctgaaatgcg
      961 atgacgggat caacgaaaga gaaaactgaa attccattaa tattttctag caaggcctcg
     1021 tgaaagagtt tagcaatgtg aatttcatca tctactatgc taacaattct ctcgatgtta
     1081 gacaagtctt atactccaat acgatataat agccataacc acccaccttg acctatacta
     1141 atatggccat ttctgctagt taagttttta gaatttaata tcgttcgaga atttacaata
     1201 cagccagcat actcttgaat tttttatcac ccgtactgat ctgaaacttg attgcataaa
     1261 agaaaaaaat aatgtcgcat gatcttgttt ttgaattacc ataatagagg gttgtttatc
     1321 aaaaaaacta tattatctag gtgattaaga tactaggtgt tgaaaatttt ttttattttc
     1381 cttcttgtac tcatcttacc aatcttccaa gcacatgcaa ctacttatac aactgtgcct
     1441 aacccacctg cgcccagtga gcttatagca agatgtgata ctgggaatta ctcatctact
     1501 gcgtgcgata ttgcggagga aatgatatct cttttaccaa gcgatattgc cacgtatgga
     1561 ttggccgatc aggattccaa agttattcag cagacactcg aacttttgga caatgtgacc
     1621 ttaaataaag tattgcaaag tatcacaaca gaggaactta ctaaattaag acaaaaatta
     1681 acaaaccaaa cttttgataa tattgttcct gaacctttgc gtgaaaggtt actgaataga
     1741 ttatctctga attagcaaat atcttgattg tcatttttag atggtataga tctagttaac
     1801 aacatagtct atatcaactc atgtgataaa tttttataaa aagcaagtcg tagtaatatt
     1861 taatcctaaa aaacaaaaac ttgccaaaat ttaactcaaa aatacttcat ttaacccact
     1921 tgggtctaaa ctattttaat aaattgaatg ttataagggt atgaatgaaa gataagccaa
     1981 tattctgtag aatctgtggt aagaaattaa agccaaaagg agagttaaga aactgcccaa
     2041 aatgtgatgc ggatcttaca gattataccc gtcagccatc ttcgtctgtg gaaaacttgt
     2101 cttacaagaa tcccggaaca actgcacttt tagcatttat tggtggtatg atagctttac
     2161 caggaatagg tcacatctat gttggaaaag tgggaatggg tgttggaata ttaattggtg
     2221 gatttatcct ttatgctctt actttttcaa taataatatc tgtaacctca gctagagctt
     2281 atgaagcaca atatagtcca actggaaatg cgtcaccttt acccatagat atgattgttg
     2341 ctaatcttgt cctactaata ggctatactg tgttatttat atatcaaata attactgcca
     2401 caaggttggc aaataaattc aacagactcg caaagacaac aggaaccaat ccatggtaaa
     2461 actttcgact ctgattgttt aggaacattt gttatattta tactaaatag atgcccactt
     2521 tctagcatgt caatgtatca agtatacatt acaataattt aaaataacaa atgtcctata
     2581 ggtgtactta acaatatcag aagaatataa ttggttggtg catatccggt gaaagtaagc
     2641 accaaccagg gattttatcc atctgccttt aacgatgaat tcaagatgga caaaactcca
     2701 atcattaaga ttttatttaa attttctaat acagataact aattgaaaaa tatataaaat
     2761 aaaaaattag aaatattaag aattcctatg tattcaaagt aactgaatac attttatatt
     2821 catatcactt cattaggcat agatggcact aagatagttt tgttttttaa caaatcccca
     2881 aacgaggtaa tacttgtgga attggaagcc gttgttttgc atggttcatc attgacacaa
     2941 a
//
LOCUS       DASUMD010000004         3209 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_111578, whole genome shotgun sequence.
ACCESSION   DASUMD010000004 DASUMD010000000
VERSION     DASUMD010000004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3209)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3209)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3209
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_111578"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            41..289
                     /locus_tag="VFX26_00050"
     CDS             41..289
                     /locus_tag="VFX26_00050"
                     /inference="COORDINATES: protein motif:HMM:NF039193.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5679 domain-containing protein"
                     /protein_id="HEX5572896.1"
                     /translation="MLATEGYCVKCKAKRQMKGESQVIMKNGRPATKGTCSVCGTKMF
                     KIGGGPSKAVKKGKAKPKSKAKPKSKAKPKSKAKARRR"
     gene            complement(360..1430)
                     /gene="trpD"
                     /locus_tag="VFX26_00055"
     CDS             complement(360..1430)
                     /gene="trpD"
                     /locus_tag="VFX26_00055"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: protein motif:HMM:TIGR01245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004048 - anthranilate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HEX5572897.1"
                     /translation="MSTEYLQKQTRKILSKEDIDVIDFRNSVNLIFLDEIPDSTIASF
                     LTALTFRGVNHDELRIIRDIMLGHSIQITPKVNGALIDNCGTGGDMANSFNISTAASL
                     VASASGINVAKHGNRSASGMFGSADFFEYIGFDLNMPEKRDIESLERLGYAFLFAPKF
                     HPKLKRISGIRKRLGFRTIFNIIGPLCNPCTNITAQVIGISDPNFFELVSNAMINSTI
                     KKIFLIHSLDGMDELSNTSRNIMFIVKSGKVEKHEVDPELLDLKIVRKDQVQIKSAED
                     SVKTTLQTIYGKSTPAKQDIVALNAAVALIAGEKTSDMNGGIKIARELVKSEVPRNKL
                     RELISSYGNIQKLDLIEKKFSL"
     gene            complement(1430..2008)
                     /locus_tag="VFX26_00060"
     CDS             complement(1430..2008)
                     /locus_tag="VFX26_00060"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004049 - anthranilate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046820 - 4-amino-4-deoxychorismate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HEX5572898.1"
                     /translation="MIIDNYDSFVYNIAQLFGKLSTRPIVFRNNKITIKDIRKMQPDG
                     IVLSPGPGHPADKKSFGICGDIIETIGPKIPVLGVCLGHQGIVHVYGGKVINAHVVRH
                     GKTSKIKYLDNELFEKLANPFVATRYHSLVASRENFPACLEVTAISLDDSEIMGLKHK
                     KYPIYGVQFHPESVLTKNGYHILENFIDILKK"
     gene            2190..>3209
                     /locus_tag="VFX26_00065"
     CDS             2190..>3209
                     /locus_tag="VFX26_00065"
                     /EC_number="1.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018039363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II glyceraldehyde-3-phosphate
                     dehydrogenase"
                     /protein_id="HEX5572899.1"
                     /translation="MVRVFINGYGNIGRRVASAFSHDKDIQFVGIGKYSIDEKLDEAI
                     TKKFPVYVPEEKMPEFRQRGYDISGTISDAIKGSDLVIDAAKDGFGFSNKVNLYIPMN
                     KPAIFQGGEDRTGEKKVADIIHNSRINYDKVVNQKYVIQGSCNVSGMGRIMQPMIEKF
                     ADKIQRYDVTLIRRWADLEDTKEVKDSIEWDKNPHHQDDVKSFLPSVKLYVEAYKVPS
                     RMMHLHQMTIRFKDKVPYFDSLSDIYHDEFGVAVFSKAKGTADIRLKAREFGFEHDDT
                     NMVHIHEETMRKSDDTLKILYSDDQTGIVIPENHLLFQSMMFGRPKNEAYERTDSLFQ
                     ISKKRN"
BASE COUNT         1080 a          537 c          568 g         1024 t
ORIGIN      
        1 cagagagcta ctcttataag gtaccaccgt agacttgaat atgttggcaa ctgaaggtta
       61 ttgtgtaaaa tgtaaagcaa aaaggcagat gaaaggcgag tcacaggtca tcatgaaaaa
      121 tggtagacct gcaacaaagg gaacatgctc agtttgtgga accaagatgt tcaagatagg
      181 cggtggtcca agcaaagcag taaagaaagg aaaggcaaaa ccaaaatcaa aggcaaaacc
      241 aaaatcaaag gcaaaaccaa aatcaaaggc aaaggcaaga agacgataaa atcctaaatt
      301 tcttttttat cttttttatt ctaagaattg tcaattattg aataaatgta taattccatc
      361 tataaagaaa attttttttc gataagatct aatttttgaa tgtttccgta agaagatatc
      421 aactcacgta atttatttct tggaacttca gattttacta attcccttgc tatttttatt
      481 ccgccattca tgtcactagt tttttctcct gcaattaagg ctactgctgc attgagagct
      541 actatatctt gctttgcagg agtagatttt ccatagatag tttgtagtgt tgtcttaact
      601 gagtcttccg ccgatttaat ttgtacctga tcttttcgta caatcttcag atccaataat
      661 tcgggatcca cttcatgttt ttcaactttg cctgatttaa caatgaacat gatatttctt
      721 gaagtatttg acagctcatc cattccatct aatgaatgaa taagaaaaat ttttttgata
      781 gtagaattga tcatcgcgtt cgatacaagt tcgaaaaaat tgggatcaga aattccaatc
      841 acttgtgccg taatatttgt acatggattg cataatggcc caataatgtt aaaaattgtc
      901 ctaaagccaa gccgctttct gatgccagaa atccttttta atttaggatg aaattttggt
      961 gcgaataaga atgcgtaacc aagtctctca agtgattcaa tgtccctttt ttcaggcata
     1021 ttcaaatcaa atcctatgta ttcaaaaaaa tctgcacttc caaacattcc actagcagat
     1081 ctgttcccat gttttgctac atttattcct gaagcagacg caacaagtga tgcagcagta
     1141 ctgatattaa aagaattagc catatcgccg cccgtaccgc aattatcaat tagtgcaccg
     1201 ttaacttttg gagttatttg aatggaatgt ccaagcatga tatctcttat tattcttaac
     1261 tcatcgtggt taacacccct aaatgttaac gcagtaagaa acgaagctat agtagagtct
     1321 ggaatctcgt ctaagaaaat aagatttact gagtttctaa aatcaatcac atcaatatct
     1381 tcctttgata aaatttttct cgtttgtttt tgtagatatt cagtggacat tattttttca
     1441 aaatatctat gaaattttcc aatatgtgat aaccattttt tgttagtacg gattcaggat
     1501 gaaattgaac accgtagata ggatattttt tgtgtttcag acccataatc tcggaatcat
     1561 caagtgaaat tgccgttact tctaagcaag caggaaaatt ttctcttgat gctacgagcg
     1621 aatgatacct tgttgcaaca aatggatttg ccagtttttc aaatagttca ttatccaaat
     1681 attttatttt gctcgttttt ccgtgtctta caacatgtgc gttgataact ttgccgccat
     1741 acacgtgaac tataccttga tgaccaagac atacgcctaa tactggaatt tttggtccta
     1801 tagtttcaat aatatctcca catatcccaa aagacttctt atctgccgga tgccctggac
     1861 cgggcgacag cactattcca tcaggctgca tttttcttat atctttgata gtaattttgt
     1921 tattccgaaa aacgattggc cttgtggata gcttaccgaa aagttgagca atattgtaaa
     1981 caaatgaatc ataattatca attatcaaaa tctttttcat atcaagacac cgtgatttat
     2041 gatttcatct cgtaatgtta gattttagca actattgata tttaatgttt ataaattgag
     2101 tatacataga attttttctc tggaaatgag ttgtaaaaca attaataata cattaaataa
     2161 tccttcattt ccagtaaaaa cattgagaaa tggtaagagt attcataaat ggatatggaa
     2221 atattggtag gagagtagca tctgcatttt ctcatgacaa agatattcaa tttgttggta
     2281 tagggaagta ttcaattgat gagaaattag atgaagccat tacaaagaaa tttccagtct
     2341 atgttcctga agaaaaaatg ccagagttta gacaaagagg ttatgatatt tctgggacaa
     2401 tctctgatgc aattaaagga tctgaccttg taatcgatgc tgccaaggat ggatttggtt
     2461 ttagcaataa agtaaatctc tatataccca tgaacaaacc tgctattttt caaggaggcg
     2521 aagataggac gggtgaaaaa aaagttgctg atatcattca caattcgagg atcaattatg
     2581 acaaggtcgt taatcaaaaa tatgttatac aaggcagctg caatgtctca gggatgggta
     2641 gaataatgca acctatgatc gaaaagtttg cagataaaat acagcgatac gatgttacac
     2701 taataaggag atgggcagat ttggaggata caaaagaagt taaggattct atagagtggg
     2761 ataaaaatcc acatcatcaa gatgacgtta aatcgtttct tccatcagta aaactatatg
     2821 tcgaagcata taaggttcca tcaaggatga tgcatcttca tcaaatgaca attagattca
     2881 aagacaaagt accttatttt gattcgttat ctgacattta tcatgacgag ttcggagtag
     2941 ctgttttcag taaagcaaaa ggtacagcag atattcgcct taaagcacgt gagtttggtt
     3001 ttgaacatga tgataccaat atggtccaca ttcacgagga gacaatgagg aaaagtgatg
     3061 atactctaaa aattctttac tccgatgatc aaacaggtat tgtaattcct gaaaatcacc
     3121 ttctgtttca atcgatgatg tttggcagac caaagaatga agcatatgag cgaactgatt
     3181 cgctattcca aataagtaag aagagaaac
//
LOCUS       DASUMD010000005         3538 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_775387, whole genome shotgun sequence.
ACCESSION   DASUMD010000005 DASUMD010000000
VERSION     DASUMD010000005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3538)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3538)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3538
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_775387"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(106..1479)
                     /locus_tag="VFX26_00070"
     CDS             complement(106..1479)
                     /locus_tag="VFX26_00070"
                     /EC_number="2.8.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase"
                     /protein_id="HEX5572900.1"
                     /translation="MEKVNHLATISCNCSVHLQNSKSNNKKVWVEAFGCSANIADAEI
                     IKGILCNNGYELTSIRKNSDVSILVTCAVKDATEHRMISKIKRYSKEKPLVVAGCLPK
                     TSQKLIESFSPGCSLMGPQSLDSTLQVVDASLNGRKVVALEDSMSTKVNFPRLRLNPV
                     VSIIEISSGCLSECSFCQTKLAKGSLKSYRIGEIVRQMEDDVAANCKEIWLTSTDNGC
                     YGLDLKTDLVELLEKCSNIEGEYKIRVGMMNPMYVPRFLDRLISLYRKNDKVFKFLHM
                     PVQSGSERILRKMKRGHTAKIFLDVVKELRKKIPEITIATDIITGFPSESESDFEETL
                     NLIGESQLDVVNSSRYSPRPGTVASKYPRLDTKIVKERSTRLHETIKKTSKSRNQMWY
                     GWNGKILIDELLENGKIQGRNYAYRPVIINLSRAEKIDPKRLLGHYLSVQVVEISNYS
                     LLGKLIF"
     gene            complement(1600..2952)
                     /locus_tag="VFX26_00075"
     CDS             complement(1600..2952)
                     /locus_tag="VFX26_00075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEX5572901.1"
                     /translation="MTSNSLNDLYKKKTPNSRKSYDNSVRIFPGGISHNIRFFRPYPF
                     FVNKARDKHLFDIDGNKYIDYWMGHWALILGHSPNVVVKKLDRQIHQGTLYGTANDIS
                     IKLGETIKKSVPISELLRFCTTGSEATMYAIRLARAVTKKRIICKTIGGWHGFNTDLM
                     QSVNYPFEVDEGVGMTGREGDFVESIPFNDLDRSIKLLDSVKDDLACIILEPVLGGGG
                     CIPADINYLKGLEEYCKRNDIVFVLDEIVTGFRLNFGSVSSLYRLNPDIITLGKIVGG
                     GLPIGVVCGKKEIMKLANPVENRYKEQLCYIGGGTFSSNPLTMTAGYATLDYIRENRR
                     KFYDKINKLGDITRNGLTKLFSEYGLKTQVTGIGSLFLTHFLSNRVNEIRSANDVALC
                     DYQMLTKYHFSLMTKYGIFFLPHKMGAISIVHNEKDIQSLINATEKIIQSDILIKVKN
                     "
     gene            complement(3116..>3538)
                     /locus_tag="VFX26_00080"
     rRNA            complement(3116..>3538)
                     /locus_tag="VFX26_00080"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02540"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02540"
BASE COUNT         1038 a          741 c          585 g         1174 t
ORIGIN      
        1 caatcaaatc aactcctaat cagaacattg agtattagaa taaaaattta gttgattaaa
       61 tcaagtatca tatttggtac aaaaatgttg ataagattat gggaattaga aaattaattt
      121 ccctaataag gaataatttg aaatttctac aacttgtact gatagataat gtcctagtaa
      181 ccgctttgga tcaatttttt ctgcccttga taaatttatt attactggtc tgtatgcgta
      241 atttctacct tgtatcttgc cattttctaa aagttcatct atcaaaattt taccgttcca
      301 tccataccac atttgatttc tactctttga ggttttcttg attgtctcgt gtagtctagt
      361 acttctttct tttacaatct ttgtatctag tcttggatat ttggaggcga ctgttccagg
      421 acgaggacta tatctggaag aatttacaac gtctagttga ctttctccaa taaggtttag
      481 agtctcttca aagtcgctct cggattctga cggaaagcca gtaattatat ctgtggcaat
      541 tgttatttct ggtatttttt ttctcagttc ttttactacg tcaagaaaaa tctttgcagt
      601 atgacccctc ttcattttac gcagaattct ctcgcttcca ctttgcaccg gcatatgaag
      661 gaacttgaaa accttgtcgt ttttgcggta aagtgaaatt aatctgtcca aaaaccttgg
      721 aacatacatg ggattcatca taccgacacg aattttatat tctccctcaa tattggagca
      781 cttttcaagt agttcaacta ggtcagtttt caaatccaat ccataacatc cattgtcagt
      841 ggaagttaac caaatttcct tgcaatttgc tgccacgtca tcttccattt gccttacaat
      901 ttcaccaatt ctatagctct ttaacgatcc ttttgctaat ttcgtttgac aaaagctaca
      961 ttcgcttagg catccactgg agatttcaat aatactgact actggattta atcttagtct
     1021 tggaaaattt acctttgttg acatggagtc ttctaatgcc acaacttttc gaccgttcaa
     1081 agaagcatca acaacttgaa gcgtactatc tagggactgc ggccccatga gtgagcaacc
     1141 aggagagaag gattcaatca atttctggct tgtttttgga agacacccag caacaacaag
     1201 cggtttttct tttgagtatc tttttatttt tgaaatcatt ctatgttcag tggcatcctt
     1261 cacagcacat gtgactagga tgctgacatc cgaattcttt ctaatagaag tcaactcata
     1321 tccgttattg caaagtattc ctttgattat ttctgcatct gcaatgttag cagagcaccc
     1381 aaatgcttct acccatactt ttttgttatt tgatttagaa ttttgtagat gaacactaca
     1441 gttacatgaa atagttgcga ggtgatttac cttttccaaa tgtagtcaac tataatggaa
     1501 aatattggta ctatatcaat taatttatct ttattgatga atgactcaca gtgatgtagt
     1561 cttcccagtc agctcaccac atgcgcaaga gcgttatgac tagtttttta cttttatcaa
     1621 tatatctgat tgaattattt tttcggtagc attaatgaga ctctgaatat ccttttcgtt
     1681 atgaacgatt gagatagcac ccatcttatg tggtaggaaa aatattccat attttgtcat
     1741 caacgagaag tgatatttag taagcatttg ataatcacat aaagctacat catttgcact
     1801 ccttatttcg tttactctat ttgaaagaaa gtgtgttagg aaaagggaac caataccggt
     1861 tacttgtgtt ttcaatccat attcggaaaa taattttgtt aaaccattcc tagttatatc
     1921 tcctaatttg ttaatcttgt cataaaattt tctacgattt tctctgatat aatcaagggt
     1981 ggcgtatccg gcagtcatag taagaggatt tgaagagaat gtcccaccac caatgtagca
     2041 tagctgttcc ttatatctgt tctcaacagg attagctagt ttcattattt cctttttacc
     2101 acatactact ccaattggaa gaccccctcc cacaattttt ccaagggtaa ttatatctgg
     2161 gtttaaacga tatagggatg aaacgctgcc aaaattgagt ctaaatccag taacgatttc
     2221 atctaagaca aacactatat catttctttt acaatactct tcgaggccct tcaagtaatt
     2281 gatatctgca ggtatacaac ctccacctcc caatacgggt tctagaatga tacacgctaa
     2341 atcatctttt acgctgtcca ataatttgat agatcgatct agatcattaa atggaattga
     2401 ttcaacgaaa tcaccctccc tgccagtcat acctactcct tcatcaacct caaatggata
     2461 attcacggac tgcatcaaat cggtattaaa tccatgccag ccaccaatag ttttacaaat
     2521 aatccttttt ttagtcacgg ccctagctaa tcgaatcgcg tacattgtag cttcggagcc
     2581 ggtagtgcag aatcttaaaa gctcactaat agggaccgat ttttttatgg tttctcctag
     2641 cttgatacta atatcatttg cagtaccata tagtgtaccc tgatgtattt gtctatcaag
     2701 tttcttaact actacatttg gagaatgacc tagaattagc gcccaatgcc ccatccagta
     2761 gtcaatgtac ttgttaccat caatatcaaa gaggtgttta tctcttgcct tatttacaaa
     2821 aaacggatag ggcctaaaaa atcgaatatt atgactaata cctccaggaa agatccttac
     2881 agaattatca taggatttcc ttgagttggg agtttttttt ttatacagat cgttcagact
     2941 gttagatgtc actactacaa tcctttacaa gacctattta ttacgattat gaaatatcaa
     3001 aaagaaacaa aaaagattgt catacaaaag aacaatttga cgaactgacg aactgaacaa
     3061 aacagtgaat tctatcgtat tgaataatac tgaatccatc atctagttag tctgtaaatc
     3121 aggtgcgttg ggctattagt aatggcaggc tgaacatctc gcaaaaagct cgatgcgtac
     3181 acctccattc tatcaacgct atcttctata gctgcccttc tccttacaga aggttgtctt
     3241 ttctcgggaa aggtttcctc cttagatgct ttcaggagtt atcctaaaca gcttagcggc
     3301 tcagcctgcc ctgtcggaca actgataaac cagaggctgc gctgccctgt tcctctcgta
     3361 ctatgggcaa cttcccctca aacaactaca cccctgtcag gcagagaccg acctgtctca
     3421 cgacggtcta aacccagctc acgttcccct ttaatgggcg agcagcccca cccttggctc
     3481 ctgctgcaga accaggatgg gaagagccga catcgaggta ccaaaccgcg gggtcgat
//
LOCUS       DASUMD010000006         2747 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_222724, whole genome shotgun sequence.
ACCESSION   DASUMD010000006 DASUMD010000000
VERSION     DASUMD010000006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2747)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2747)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2747
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222724"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1587)
                     /locus_tag="VFX26_00085"
     CDS             complement(<1..1587)
                     /locus_tag="VFX26_00085"
                     /inference="COORDINATES: protein motif:HMM:NF013647.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0033179 - proton-transporting V-type
                     ATPase, V0 domain [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_function: GO:0046961 - proton-transporting ATPase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATPase 116kDa subunit family protein"
                     /protein_id="HEX5572902.1"
                     /translation="MGQAKLLKSTVILPRIETHEVVSKLAELEWFHPLQNPSDHSNPY
                     FDDLLLNAQKLFQEVDEVIRSLGIPLETGVMATLFKGAPQEKTEYKINDIQNFIVELE
                     KKSKVLLEEPMSLLKTQQQIEKELEEYRNALDAIGSASKLKMELSGLRNLKTFFAEIF
                     IVNTKDIREIQNSLSDLIVHPFKLNDQKSSITVIGSQEDSEKIMKVLRSFNVHPIQIP
                     SDLPQNPSLAYDKCQKVCKDLEKKSTEVTKKIEKLKVTLLSKLLSLYESSKIAKDVLE
                     VTRKPGGTKNFAVIQGYIPVSMAKRFDVLTKSYVSITEPAYADMNANNQLPTLLVNNR
                     YAKTFEVITDTQGIPSPGEVDPTPIIAFVWPMLYGLMFADFGHGLLLFGLGMFLRYRA
                     NGNLKTWATLLAASGAAAAIAGLGVGEMFGFHILEIPGLALIFEPLDGLVGILNVSEL
                     TFDQVVNILAVSVAIGIMHLLMAMFLKLRADILERNKLAVLTHDIPYIFQFLAVVALI
                     LAAIGSGYDIIGMFGITGVTH"
     gene            complement(1833..2162)
                     /locus_tag="VFX26_00090"
     CDS             complement(1833..2162)
                     /locus_tag="VFX26_00090"
                     /inference="COORDINATES: protein motif:HMM:NF012365.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase subunit C"
                     /protein_id="HEX5572903.1"
                     /translation="MMSVDREKVSIILLTIAITSSILLFYNNWVYAQAETEGTSDAGS
                     KFIGAGMAFGLAAAGSGIGLGFVGAAGLAAISDNPKMQSRVFIFVGMVESIAIYGIVM
                     MFIILGQ"
     gene            complement(2405..2536)
                     /locus_tag="VFX26_00095"
     CDS             complement(2405..2536)
                     /locus_tag="VFX26_00095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572904.1"
                     /translation="MDNDIIAEYFRKSKQNLQSEHDSMVENVKNDISSYKKKAMSNV"
     gene            complement(2570..>2747)
                     /locus_tag="VFX26_00100"
     CDS             complement(2570..>2747)
                     /locus_tag="VFX26_00100"
                     /inference="COORDINATES: protein motif:HMM:NF013935.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0046961 - proton-transporting ATPase
                     activity, rotational mechanism [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="V-type ATP synthase subunit D"
                     /protein_id="HEX5572905.1"
                     /translation="AKELEKTQKLINALEFVIIPQYQNAIAFIKGTLEEREREEFVRL
                     KKVKVVLDKKKNIE"
BASE COUNT          840 a          557 c          439 g          911 t
ORIGIN      
        1 atgagtaact cccgttattc caaacatgcc tattatatcg tatccagaac ctatcgcagc
       61 aagtatcaat gctactacgg caagaaactg aaatatatat gggatatcat gtgtcagaac
      121 ggctagttta ttccgttcca atatatcagc tctaagtttc aggaacattg ccatcaataa
      181 atgcataata ccaatagcaa ccgacaccgc tagtatgttt actacctgat caaatgttaa
      241 ttctgacaca tttaggatgc ccactaaacc atctaatggt tcaaaaatga gtgccaaacc
      301 tggtatttcc aatatatgaa aaccaaacat ctcccctaca cctaaaccgg ctatggcagc
      361 tgctgcacca cttgcagcca atagcgtcgc ccatgtcttc aaattcccat ttgctctata
      421 cctaagaaac atacccaagc cgaaaagcaa caggccatgc ccaaaatctg caaacataag
      481 gccgtataac ataggccata caaaggcaat aatcggagtt gggtcaactt caccaggcga
      541 gggaataccc tgcgtatcag ttattacttc aaaagtcttc gcatatctat tattaacgag
      601 tagtgttgga agctgattgt tagcattcat atcagcatag gcaggttccg tgatagagac
      661 ataacttttt gtgaggacat caaacctttt cgccatgctg actgggatat atccctgaat
      721 aactgcaaaa ttctttgtac ctccaggctt tcttgtgact tccaaaacat ctttcgctat
      781 tttagatgac tcatacaatg aaagtaattt tgacaagagt gttaccttta gcttttcaat
      841 ttttttagta acttctgtgg acttcttctc aagatcctta cacactttct ggcatttatc
      901 atatgctaaa cttggatttt gtggcaaatc agaggggatt tgaataggat gtacattgaa
      961 gcttctaagc accttcatga ttttttcgga atcctcttgt gagccgatga cagtaataga
     1021 agatttctga tcattaagtt tgaatggatg gacaatcaga tcactcagac tattttgaat
     1081 ttccctaatg tctttggtat taacaataaa aatttctgca aaaaatgttt tcaggttacg
     1141 gagtccagat agttccatct tgagctttga agcactacca attgcgtcca atgcatttcg
     1201 gtactcttca agttccttct caatttgctg ttgagttttc agtaaggaca ttggttcttc
     1261 taatagaacc ttacttttct tttctaattc aacaatgaaa ttttgaatat catttatctt
     1321 gtattcagtt ttttcttgag gagcaccctt gaagagagtc gccattacac cagtttcaag
     1381 cggtatcccc aaagatctta tgacttcatc aacctcttga aacaattttt gagcgtttaa
     1441 caaaaggtca tcaaaatacg gattactatg gtcagaagga ttttgtaacg gatgaaacca
     1501 ttccaattcg gccaacttac ttacgacttc atgagtctca attcttggaa gaatcacagt
     1561 tgactttaaa agtttagcct gccccattgt attgaattgt ttgattatta attctcctta
     1621 aaatctttcc ctttcatact gttcaacaat caacaagtga tagaatgttt ttaattgtca
     1681 attaatggct ccttgatatt ctaattcctc ttactcaaca atagaaataa tacttttgtt
     1741 gattccatgg acaacaaaat tggctgtgat ctagtccaag gtaccacgtt ctctacggaa
     1801 aaaagaatcc cgtcgaggac gtattcttct cgtcattgac ccaggataat gaacatcatt
     1861 acaataccat agattgcaat ggattctacc atacctacaa atatgaagac tcttgattgc
     1921 atctttggat tatcgcttat cgcagctaaa ccagcagcac ctacaaatcc taagcctatt
     1981 cctgatccag cagctgcaag accaaacgcc attcctgcac caataaattt ggaacctgca
     2041 tcggaggtgc cttctgtttc cgcttgtgca taaacccagt tgttataaaa taatagtatg
     2101 ctagatgtta tagcaatggt cagaagaata atactaactt tttctctgtc aacactcatc
     2161 atacagtggt tccaaattga aggccatatt taattataac taagaaaatt caaaaagtca
     2221 ccgaattcaa ggcgtcatta ataaataaga cgataaaaga aattggcaat ttcttaatag
     2281 gattattgta agttattaca aacttcacaa caagaaattt cttagttgag gatattagtt
     2341 ctaaatcaaa ataattaatt gagatatttg aacatcgtac attggaaaag attccggtag
     2401 ttacttaaac gtttgacatt gctttcttct tgtaagagga aatatcgttt tttacatttt
     2461 caaccattga atcatgctct gactgtaagt tttgttttga ttttctaaag tattctgcga
     2521 ttatatcgtt gtccatcttg cttgccacca tcaatatgca ttgttttgcc tattctatat
     2581 tctttttctt gtccagaaca actttcactt ttttgagtct tacaaattct tctctttcac
     2641 gttcttccaa tgttccttta atgaaggcta tggcattctg atactgtgga attataacaa
     2701 attcaagtgc attgattaat ttctgtgttt tttcaagttc tttggct
//
LOCUS       DASUMD010000007         2128 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_665217, whole genome shotgun sequence.
ACCESSION   DASUMD010000007 DASUMD010000000
VERSION     DASUMD010000007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2128)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2128)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2128
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_665217"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..218
                     /locus_tag="VFX26_00105"
     CDS             <1..218
                     /locus_tag="VFX26_00105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEX5572906.1"
                     /translation="SIMPQIDYGKCVFCGLCVDACPFYALYMTNDYELSSFTKEHLIY
                     TPLQLAIKPKYDGDVELKIGKRGADHG"
     gene            317..1156
                     /locus_tag="VFX26_00110"
     CDS             317..1156
                     /locus_tag="VFX26_00110"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HEX5572907.1"
                     /translation="MNYSHPEVLVDTKWVEDHLNDPKVRIAEVDYDPTANYVLGHVPG
                     SVLLDWKVDINDPVARNILSKEACQELLQKIGVNDDTTLVLYGDFNNWFAAFAFWALT
                     YYGCKNMKLMNGGRKKWLEEDKALTKDIPTYPRGNFKSSGPDNNIRVFLRYVSDTLGS
                     KALVDVRSPKEFTGEILAPPEYPTEHAQRGGHIPGAANIPWAQAVNDDGTFKSAEELT
                     KIYHAKGITPDKEIISYCRIGERSSHTWFVLKYLLGYPNVKNYDGSWTEWGNMIDNPI
                     EKQ"
     gene            complement(1238..1927)
                     /locus_tag="VFX26_00115"
     CDS             complement(1238..1927)
                     /locus_tag="VFX26_00115"
                     /inference="COORDINATES: protein motif:HMM:NF013743.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572908.1"
                     /translation="MRISHCEFPEGILYDLNNFVWIKRNDNDHYVVTLGLTPILISLA
                     GKLTKIKLKEIGTIIEKSKSVGSIESPRYFGMVRCPVNGEIVEVNNTLTDKPKTVNDF
                     PYNEGWFVKIKIQNSDSSIDSELKSDCLKFIDECHDEIKKIMEKLHVRCFSAFPDYEM
                     FEIGVECAATLTKLDELIGKINMGNVVHVVSDDTSADLEMIRWSEEKGQDLLETRKEG
                     NLFHFIVKKIK"
BASE COUNT          670 a          369 c          379 g          710 t
ORIGIN      
        1 aatctataat gccacaaatt gattatggaa aatgtgtatt ttgtggtctt tgtgttgatg
       61 catgtccatt ttatgcactg tacatgacaa acgactatga attatcgtca tttacaaagg
      121 agcatctaat atatactcca ttacagcttg ctatcaaacc aaaatatgac ggcgatgtag
      181 aattaaagat aggaaaaagg ggtgctgatc atggctaaat catctgctac tcttttattt
      241 ttgttcaatc ttgattaatg gaaatttatg aaaaactaat ataagataaa cgtaaattcg
      301 atctaggtgt tatgaattga attattctca tccagaagtt ctggtagata ctaaatgggt
      361 cgaagatcat ctaaatgatc caaaggttcg aatcgcagaa gtagactatg atcctactgc
      421 taactatgtc ttgggacatg tcccgggatc agtcctacta gattggaaag ttgacataaa
      481 tgatcctgtt gcaagaaata ttctaagtaa ggaagcatgt caagaattgt tgcaaaaaat
      541 aggagtaaat gatgatacta cactagtcct ctatggcgac tttaataatt ggtttgctgc
      601 tttcgcattc tgggcactta cttattatgg atgcaaaaat atgaaattga tgaacggcgg
      661 tagaaaaaaa tggttggagg aagacaaagc acttacaaag gatataccaa cttatccgcg
      721 tggaaatttc aagagttctg gtcctgataa taacatacgc gtgtttctaa gatatgtgag
      781 tgatacactt ggtagtaagg ctcttgttga tgttagaagt ccaaaagaat tcacaggaga
      841 gatattggcg cctccagaat accctacaga acatgctcaa agggggggac atattcctgg
      901 tgcagctaat attccatggg cccaggcagt aaatgatgac ggaacattca agtcagctga
      961 ggagctaaca aagatttatc atgcaaaagg gattactccg gataaggaaa tcatttcata
     1021 ttgtagaatt ggtgaaagat cttcgcatac gtggtttgta ctaaaatatc tgctgggata
     1081 ccctaacgtc aagaactatg acgggtcatg gactgaatgg ggtaacatga tagacaatcc
     1141 aattgaaaag cagtaggata gaatattata tccttccaca tactttttga tttgaaatat
     1201 tattttaatc catttatttc attttagccg tattatttta ttttattttc tttactataa
     1261 agtgaaaaag gtttccttcc tttctagttt ctaagagatc ttgtcctttt tcttccgacc
     1321 atcttatcat ttcaagatcg gcagaagtat catcagaaac gacatggaca acatttccca
     1381 tattgatttt gccaattagt tcatccagct ttgtaagtgt cgcagcgcac tctacaccaa
     1441 tttcgaacat ctcgtaatca ggaaacgccg agaaacatct tacatgaagt ttttccatta
     1501 ttttttttat ttcatcatga cattcatcaa taaattttag acaatcactc tttaattctg
     1561 aatcgatact tgagtctgaa ttctgaatct ttatctttac aaaccaacct tcattgtatg
     1621 gaaaatcatt aacagttttt ggtttatcag tgagtgtatt atttacctca actatctccc
     1681 cattgacagg acatctaacc ataccaaagt atcgagggct ttcaattgat ccaacactct
     1741 tgcttttctc gatgatggtt ccaatttctt ttagttttat ctttgtgagt tttcctgcca
     1801 gtgagataag aattggcgtc aatcctaacg tgactacgta atggtcattg tcatttctct
     1861 ttatccacac aaaattgtta aggtcgtaca gtattccttc gggaaattca caatggctta
     1921 ttcgcatgtc attggtctta ttgacggagt gggtttattt ttctattgaa ttaataaaaa
     1981 taagagtaga atcctcacat atttgcgcaa ttctaagttt tgagtttcta gtttcattca
     2041 tttaaacaag attctatggt tttttatacc tttaaacccc attatatacc aaacacatat
     2101 atacccttta ataccattga atggtgaa
//
LOCUS       DASUMD010000008         2180 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_112492, whole genome shotgun sequence.
ACCESSION   DASUMD010000008 DASUMD010000000
VERSION     DASUMD010000008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2180)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2180)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2180
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_112492"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..356)
                     /locus_tag="VFX26_00120"
     CDS             complement(<1..356)
                     /locus_tag="VFX26_00120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX5572909.1"
                     /translation="MSNTLFSELEHDARALLTDLQKQGGPPIYTLSPDQARGVLSGLQ
                     ASSPVQKLPADVDNRTIPGGSNSKDVSITIVRPQNSRNDTLPVVVFTHGGGWVLGGFD
                     THERLVREIANKANVVV"
     gene            complement(577..1986)
                     /locus_tag="VFX26_00125"
     CDS             complement(577..1986)
                     /locus_tag="VFX26_00125"
                     /inference="COORDINATES: protein motif:HMM:NF012398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HEX5572910.1"
                     /translation="MNGTEIETKLMTLNPATEEILKEYEIMTKEKIHECVKKAREAFS
                     EWKKDIHKRSDFLYAFANEFRKNKEILAKTATQEMGKAIKESRSEVDKCAWTMEYFAD
                     NGKAFASEEVVNTDARKSIVTYEPLGVIGSIMPWNFPYWQALRFAAPSLMVGNTIILK
                     PASATMQCGIEIENIFRKAGVPAGIFQTLIGNSSIAETLIDSDINAVTFTGSVPVGAK
                     VAMRATSQLKKTVLELGGSDPFIVCEDADIEKTSTGAVKGRFINCGQSCIASKRFIVV
                     TSVAKEFIERFVQKTEKLKIGDPLSDDTDIGPLVNAKSLNNMESLVTDSVREGAEIIT
                     GGERAYSKGFYYRPTIMKNVSPKMNIATEEVFGPIAPIITVDDEREAMKIANDSKYGL
                     GASIWTQDLDKAEKLSRAVESGIVTVNNVVVSDPRVPFGGIKNSGFGRELSRFGMLEF
                     VNIKSVRFYDQLIHNHHVE"
BASE COUNT          600 a          466 c          391 g          723 t
ORIGIN      
        1 acaactacat ttgctttatt tgctatctct cttaccagtc tttcgtgagt atcgaaccca
       61 ccaaggaccc atccgcctcc atgggtgaag actacaactg gtaaagtatc atttctacta
      121 ttttgggggc gaactatggt aatagataca tctttggaat tagatccacc tggtatggta
      181 cgattgtcta catccgccgg aagtttttgg accggagaac tagcctgaag cccggataaa
      241 acaccacgag cttggtctgg ggacagtgta taaatcggtg gtcctccttg cttctgcaaa
      301 tcagtcagaa gagctcgagc atcgtgttca agttcgctaa atagcgtgtt gctcataaac
      361 aggatatagg tttttcaggt tattacaggt ttcgattatt tgacaataat tctgtttagc
      421 tttgatcatt gtcttaagtg atcagaccat gagcgagcaa acagttctga tgattaatta
      481 tacatatgag taacgacttt tcgcaaaaca aatgaactgc taatatttat gtcgtttctg
      541 ccatcttgct gtgtgtttaa ttgagttgta tacaattcat tccacatggt gattatgaat
      601 caattgatca tagaatctga ctgactttat attaacaaat tctaacatgc caaatctgga
      661 taactccctg ccaaatccgc tatttttgat acctccgaaa ggaaccctag gatctgatac
      721 tactacattg ttcacagtaa caatgccgga ctcgacagct cttgataact tttcagcttt
      781 atctagatct tgtgtccaga tacttgctcc aaggccatac ttagaatcat ttgcaatttt
      841 cattgcctct ctttcatcat cgactgtaat tatgggagca ataggaccaa acacttcttc
      901 ggttgctatg ttcatctttg gagaaacgtt tttcataatt gttggacgat agtagaaacc
      961 cttgctgtac gcacgctctc cgcctgtaat tatttcagca ccctccctca cagaatctgt
     1021 gacgagggat tccatattat tgagactttt ggcattaaca agtggaccaa tatcagtatc
     1081 atctgaaaga ggatctccta tcttcagctt ttcagttttt tgcacaaacc tttctataaa
     1141 ctcctttgca acacttgtta ctacaataaa cctttttgaa gcaatacagc tttgcccaca
     1201 attgataaag cgtcctttga ctgctccagt tgatgttttt tcgatgtcag catcttcaca
     1261 aactatgaat ggatcgcttc ctcctaattc aagaacagtt tttttcaatt gggatgtagc
     1321 ccgcatagca acttttgcgc ccactggaac actaccagta aatgttactg cattaatatc
     1381 tgaatcgata agggtttcag caatactcga atttcctatt agagtctgga aaatgccagc
     1441 cggtactccg gcttttctaa aaatattctc gatctcaatc ccacattgca ttgtagcact
     1501 tgccggtttt aaaataatgg tattgccaac cattaatgaa ggagctgcaa atcgtagcgc
     1561 ttgccaatat ggaaaattcc aaggcattat gctgccaatt actccaagag gttcataggt
     1621 tacgatgctc tttcttgcgt cggtgttgac tacttcctct gaggcaaaag cttttccatt
     1681 atctgcgaag tattccattg tccaggcaca tttgtctact tcagaccttg attctttgat
     1741 agcctttccc atttcttgtg tggcagtctt agctagaatt tccttattct ttctaaattc
     1801 gtttgcaaag gcatagagaa aatctgacct tttatgtatg tcttttttcc actctgaaaa
     1861 tgcttctctt gccttcttga cgcattcgtg gattttttct ttagtcatga tttcatactc
     1921 cttaaggatc tcctccgttg ctggatttag cgtcatcaat tttgtttcaa tttcagtccc
     1981 gttcaaggat acatcatccc gtcaccccag tattttgcca taactggaaa aaccgcattg
     2041 tgggatataa atgtggaata ttttgttaca atagtgagtt aaggcttcat cagaaataaa
     2101 atatgtcaaa ttgaacaaag tacatttaaa gaaagggaaa aggaggcaaa ataccgattt
     2161 ggtgtaactc ttatcatcaa
//
LOCUS       DASUMD010000009         4242 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_775952, whole genome shotgun sequence.
ACCESSION   DASUMD010000009 DASUMD010000000
VERSION     DASUMD010000009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4242)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4242)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4242
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_775952"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..978
                     /locus_tag="VFX26_00130"
     CDS             <1..978
                     /locus_tag="VFX26_00130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572911.1"
                     /translation="KTSTIIKFSNMLENEFKKSGLTLKVAYINLKLQGGNKYAVYRFL
                     LETIAPELPSQGLSAEEMLRYLLSYLYENKLYTLIILDEIEFLLRSNKDSGIIYDFTR
                     LNEFDLSKHCNVIGVIFIARSTDFHDKIDSSELSTLGRIPIEFLPYSIEQISDILVRR
                     SSESFNPNIVGTDIIDEVSLITTSSQVDGDVRYALDLLLYAGNLAEANGSDRITLEQI
                     RKVHGYNKPSITMQDLKELPKTHLITLMAILKVQNKRKKQYIELKEIRTYALELADEH
                     KMKKFEFEDYMNDLLDRKIIEMKSLKEIGMNITSLAELEPLLEQQINKK"
     gene            978..1268
                     /locus_tag="VFX26_00135"
     CDS             978..1268
                     /locus_tag="VFX26_00135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572912.1"
                     /translation="MDYDSKTIIENGIGTIGKIKIIKALAEENKMVTIYVLHKRTGLK
                     REDIKRNLKDLRSIDWIKEKKMANTMYHLNKDNEYVNAILGFFANVGYIGQA"
     gene            1390..3012
                     /gene="pyrG"
                     /locus_tag="VFX26_00140"
     CDS             1390..3012
                     /gene="pyrG"
                     /locus_tag="VFX26_00140"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase (glutamine hydrolyzing)"
                     /protein_id="HEX5572913.1"
                     /translation="MRYRQSKPSNKFPKFIFITGGVMSGLGKGIVASSVAKLLQLTGL
                     RVTCTKIDPYVNYDAGTMNPTAHGEVFVTDDGGECDMDMGNYERFLNTPMTKWHNITT
                     GRIYSDVIKAEREGKYLGQCVQIIPHVTDVIKNSLKNLAKGYDALVVECGGTVGDIES
                     LPFLESFRQMELEEGDTETLFVHVTLAPILDVVGEQKTKPTQHSVQELRRIGIHPYIL
                     AVRCQKPLNREARHKISMFASIREQCVISCHDCSSIYDVPEILKDQGIIDVISDKLDL
                     KNRNIRWAEWKKVTNSFFNFSGNVNIGIVGKYVNLPDSYVSVYQALLHSSAKLGKKLS
                     VEWIDSERFENGNNDEVKFLNKFDGILVPGGFGARGSEGIINSINYARQKDIPFLGIC
                     FGFQLSLIEFARNQCGLVDASSQEFNPNDNNSLVKFMPEQEHTVNLGGSMRLGKHDIT
                     IIPQTLADSIYQNKKIERRHRHRYEFNQDYRQAIEENGMVLSGHSDKGRRIEILEFPS
                     NKFFFAVQYHSEFSSIPGRPEQAFEAFITSCI"
     gene            complement(3014..4021)
                     /locus_tag="VFX26_00145"
     CDS             complement(3014..4021)
                     /locus_tag="VFX26_00145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003951 - NAD+ kinase activity [Evidence
                     IEA];
                     GO_process: GO:0006741 - NADP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+)/NADH kinase"
                     /protein_id="HEX5572914.1"
                     /translation="MKVAISSLSSRDDSLIDKIKKILDDENIDSEIIKRSDKMTTSNV
                     DVVITAGGDRAILDYSHYIKEFSVPVLGIYESDSTGFLGQIEVSDLKKSIGRIKKGDY
                     EIDNVCRLSVIVDGKEIEPVLNDISLFPRKSATLMEYILKINGTDLWHDNSDGVIIST
                     PIGSTAYCMSAGGPMVLQRSQVFVIVPVNSMDNTRRPLIVPNTDRLEIEDILCRYLCE
                     VILDGGKRVAVRKNIVCEKHEFPAKFVRLIKDSPMDIIAKKVKLAEDLLDMPPSAKLI
                     LKTLEYEGELSQKDLSKRTMLPERTIRLSLSHLIQRGYVKKKTSLRDARQKTYELNLK
                     L"
BASE COUNT         1463 a          712 c          789 g         1278 t
ORIGIN      
        1 aagacatcta caataataaa attttcaaac atgttggaaa atgaattcaa aaaatctggg
       61 ttaacactca aggttgccta cataaatcta aaacttcagg gtggaaataa atatgcagtt
      121 tataggtttc tattggaaac aattgctccc gaacttcctt cacagggact tagtgcggag
      181 gagatgttaa gataccttct ttcatatttg tatgagaaca agttatacac tttgattatt
      241 ttggatgaaa tagagttcct gttacgctcc aacaaagaca gtggcataat ttatgacttt
      301 acacgcctca atgaatttga tctatcaaaa cactgtaatg ttataggtgt aatcttcata
      361 gcaaggagta ctgattttca tgacaaaatc gatagttcag aactaagtac tctgggaaga
      421 ataccaattg agtttctacc ttattctata gaacaaataa gtgatattct agttagaaga
      481 tcttccgaat cattcaatcc gaacattgta ggtactgaca taattgatga agtatcactt
      541 attacaacat cttcgcaagt tgatggggat gttagatatg ctttagacct actactgtat
      601 gcaggaaatc tggcagaagc aaacggaagc gatcgaatca cattagaaca aattcgtaaa
      661 gtccatggct acaacaaacc atccattacg atgcaggatt tgaaagaact tcccaagact
      721 catctgatta cgctaatggc cattttaaaa gtacaaaata aaagaaaaaa gcaatacatt
      781 gagcttaagg aaattcggac ctatgcactt gaattagcag atgaacacaa gatgaagaaa
      841 tttgaatttg aggattacat gaatgatctt ctcgatagaa aaataatcga aatgaaatca
      901 ttaaaggaaa taggaatgaa cataacctcg ttggctgaat tagaaccttt attagaacaa
      961 cagataaata aaaaataatg gattatgata gcaaaaccat tatagaaaac ggaattggaa
     1021 cgatcggcaa aatcaagata ataaaagccc tagccgaaga aaataaaatg gtaactattt
     1081 atgttctcca taaaagaacc ggattaaaga gagaagatat caaacgaaat ctaaaagatt
     1141 tgcgcagtat tgattggata aaggaaaaaa aaatggcaaa tacgatgtat catcttaaca
     1201 aggacaacga atatgtgaat gccatccttg gtttttttgc taatgtgggc tatattggac
     1261 aagcttgaaa ttagtttcca ggtgcacagg atctagaaaa ttatatcttt gctgttgatt
     1321 ttggactcat ttgctcaaat tacgagatag tctgaaaacg attaaaaagg tgagaaaata
     1381 aagtctaatg tgcggtatag acaaagcaaa cccagtaaca aatttccaaa gttcatcttt
     1441 attactggtg gagtaatgtc aggtcttgga aaaggaatag ttgcttcttc ggttgcaaag
     1501 ttattacagc taactggttt aagagtaacc tgcacaaaaa ttgatccata tgtgaattac
     1561 gatgcaggaa cgatgaaccc aactgcacat ggagaggtct ttgttacgga tgatggggga
     1621 gagtgtgata tggatatggg aaactatgaa agatttctta atacaccgat gacaaaatgg
     1681 cataatatta ctactggaag gatctattct gatgtaataa aggctgaaag agaaggcaag
     1741 tatctgggcc aatgtgttca gataatacct catgtaactg acgtaataaa gaatagttta
     1801 aagaatctag ctaaaggcta tgacgcttta gttgttgaat gtggtggtac ggtgggtgat
     1861 atagaaagtc ttccattcct ggaatctttt agacagatgg aattagaaga aggcgataca
     1921 gaaaccctat tcgtacatgt aacattagca ccaattttgg atgtggtagg agaacagaaa
     1981 acaaaaccca cacagcacag cgttcaggag ctccgaagga ttggaattca tccatatatc
     2041 ctagcagtca gatgccaaaa gccactgaat agagaagcaa gacataagat ttcgatgttt
     2101 gctagcatta gagagcaatg tgttatttca tgtcatgatt gttcttcgat ttatgatgtc
     2161 ccagaaatat taaaagacca aggaataatt gatgtaatct ctgataagct tgatctaaaa
     2221 aaccgtaaca taaggtgggc tgaatggaaa aaggtaacaa attctttctt taacttttca
     2281 ggaaatgtaa acataggtat tgttggtaaa tatgtaaatt taccagatag ctatgtgagt
     2341 gtatatcaag cgttgctgca ttcatcagca aaactgggca agaaattaag tgttgaatgg
     2401 attgattctg aaagatttga aaatggtaat aacgatgaag tgaaattctt gaacaagttt
     2461 gatggaattc ttgttccggg aggatttgga gcaagaggaa gtgaaggaat aataaattca
     2521 attaattatg ctagacaaaa ggatatacca tttttaggaa tctgttttgg atttcaactt
     2581 tcgttaattg aattcgcaag aaatcaatgt gggttagtcg atgccagttc acaggaattt
     2641 aaccctaatg ataacaattc attggtaaaa ttcatgcccg aacaggaaca tactgttaac
     2701 cttggcggtt ctatgagact tggaaaacat gatataacca taatacccca gacattggcc
     2761 gatagcatat accagaataa gaaaattgag cgaagacaca ggcataggta cgaatttaat
     2821 caggattaca gacaagctat agaagaaaat ggcatggtgt tatccggtca ttccgataaa
     2881 gggagaagaa tagaaattct agaatttcca tcaaacaagt tctttttcgc tgttcagtat
     2941 cattcggaat ttagcagcat accaggtaga ccggaacaag catttgaagc attcataaca
     3001 tcttgcatct agctcaaagt tttaggttta actcgtaagt tttttgtctg gcatcacgca
     3061 aagatgtctt cttcttgaca tacccgcgtt ggataaggtg actcaaggac aatcttatag
     3121 ttctctctgg tagcatcgtt ctcttgctca gatccttttg gctcaattcg ccttcatact
     3181 ctagagtttt taagatcaat ttagcactgg gtggcatatc aagcaggtct tctgccaatt
     3241 ttaccttttt agcgatgata tccataggag aatccttgat taatctcaca aattttgctg
     3301 gaaattcatg tttttcgcat acaatatttt tccgaacagc tacccttttt cctccatcta
     3361 ggattacctc acacagatat ctacagagta tatcctcaat ttccaaccta tcagtattag
     3421 ggactataag aggcctacga gtattgtcca tagaattaac tggaacgata acaaaaacct
     3481 gcgacctttg taaaaccatc ggcccccctg cagacataca ataagctgta gacccaattg
     3541 gcgtggaaat gattacacca tcactgttat catgccagag atcagttcca ttaatcttta
     3601 atatatattc cataagagta gcgctttttc ttgggaagag agaaatatca tttaagactg
     3661 gttcaatttc tttaccatca acaataactg aaagtcggca tacattgtct atttcatagt
     3721 cacctttttt tattctgcct atagattttt ttaaatcact cacctcaatt tgtcccaaaa
     3781 atcctgttga atctgattca tatattccca gaacaggtac agagaattct ttaatatagt
     3841 gtgaataatc aagtatcgct cgatctccac cagcagtaat cacaacatct acattcgaag
     3901 tcgtcatttt gtcggatctt tttattatct ctgaatcaat attttcatcg tctaaaattt
     3961 tcttgatttt gtctattaga ctatcgtccc tggagcttag acttgagata gccactttca
     4021 ttgtaactat taaaagtcaa cagacactca aatttaaacc tgatttatga catgtctaaa
     4081 ttattttaaa tttcattgta ttgtaattat atgaagcgtt ttcttctatt gcggatttgg
     4141 agggtatttt tttaattcca atctcatttg tttgtattgc cgcaattaac gcccccactg
     4201 caaaacaaaa tgcccaaata gaatcttttt ctttaacaat ag
//
LOCUS       DASUMD010000010         2867 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1439447, whole genome shotgun sequence.
ACCESSION   DASUMD010000010 DASUMD010000000
VERSION     DASUMD010000010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2867)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2867)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2867
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1439447"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..629
                     /locus_tag="VFX26_00150"
     CDS             <1..629
                     /locus_tag="VFX26_00150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEX5572915.1"
                     /translation="CFKIISSGETINFDGNFFKLKNIKIMHPSQRREIPVFLGAVNPG
                     MIRLATEIADGIILYLSPLDELKKTVERIKSLTSRKSKSFEICSVFITAISNKYPDLA
                     RERAAKTLAFYVAVGKYYNEFLSSHGFKSQVDQITTEYQNQGIENISKFVTDPMLDSL
                     TIYGTTEDCIKSLKRFVSCGVSLPILQVNPVKDNLQSISDSLLLVENV"
     gene            622..1725
                     /locus_tag="VFX26_00155"
     CDS             622..1725
                     /locus_tag="VFX26_00155"
                     /inference="COORDINATES: protein motif:HMM:NF012336.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiolase family protein"
                     /protein_id="HEX5572916.1"
                     /translation="MSRVAIVDQSTSKFTKETSLSVQELACDPCKAILQKYKDMDVRV
                     DSVILSTTADVQYGSTIISESLGIKPAISQRLDNLCNSGTNAIVSAYSLIKSGLCKNA
                     LVVGADIKQTNGSQLVWDISRGSFTLPVYWAALFAKSHMRKYGTTEEQMASVAVKNRK
                     NAYLNHNALFRKKISVKDVMNSKKLVEPLKLLDCSYVCNGASAIFLSNEEESKKYTDV
                     PVWIEGIGSSVEAASFSNVSSDLSSIHSTRIASNMAFSMTNIKPEQIDVVELHDAFTI
                     MEIMAYEDMGFCKKGEGGKFVFQKNISINPRGGLLGTGHPLGATGVAQTVEICEQLKG
                     LAGSRQIKGCKRGLVHNMSAAGSSSLVLIISKT"
     gene            1947..2156
                     /locus_tag="VFX26_00160"
     CDS             1947..2156
                     /locus_tag="VFX26_00160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572917.1"
                     /translation="MSKSEMRGQLIEHSSSFIGNSKKLGLVEMSGIRIIGILSEGNMN
                     PGSTVKLIKCGVDKDNLPYFEFSSA"
     gene            2207..2566
                     /locus_tag="VFX26_00165"
     CDS             2207..2566
                     /locus_tag="VFX26_00165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572918.1"
                     /translation="MSYDRFVDDRLLTSRDVLNRKQIKIKLVDYDESARDFSQRFGSR
                     ILVRKVLLTIKKTDTEEIEEKELDVEELEKRIRKERLWSSSNRWISKSELKNGYIVAS
                     RHLDLLANAIALDIIQF"
     gene            complement(2740..2841)
                     /locus_tag="VFX26_00170"
     tRNA            complement(join(2740..2785,2814..2841))
                     /locus_tag="VFX26_00170"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2777..2779),aa:Asn,seq:gtt)
BASE COUNT          978 a          473 c          560 g          856 t
ORIGIN      
        1 cctgttttaa aatcatctct agtggggaaa caatcaactt cgacggaaat ttcttcaaat
       61 taaaaaatat aaagataatg cacccgtcgc aaaggaggga gatacctgtt tttctaggtg
      121 cggtaaatcc aggaatgatt aggctggcga cagaaatagc cgatgggata atcttatatc
      181 ttagtcccct agatgagctc aagaaaacag tagaacgtat caaatcatta acatcaagaa
      241 agtccaaaag ttttgaaatt tgttctgtct ttatcacagc catatcaaat aaatacccag
      301 atctggcccg tgaaagggcc gctaaaacac tggctttcta tgttgctgta gggaaatatt
      361 ataatgaatt cttgtcgtct catgggttca aaagtcaagt ggatcaaata actactgaat
      421 atcaaaacca aggtattgaa aatatcagta aatttgtaac agatcctatg cttgattcat
      481 taactatcta tggaactact gaggactgca ttaagtcgct aaaacgtttt gtttcatgtg
      541 gagtatcact tccaatattg caggtaaatc cagtgaagga taatttgcaa tcgatcagcg
      601 actctcttct tttggtagaa aatgtctaga gtagcaatag tcgatcaatc aacttcaaaa
      661 ttcaccaaag aaacttcact atctgtacaa gagctggcgt gcgatccttg taaagctatc
      721 ttgcaaaaat acaaagatat ggacgtacga gttgattcgg tcattttatc cacaaccgct
      781 gatgttcaat atggatcaac tattatttca gaatccttgg gcataaaacc agctatttct
      841 caaagactgg acaacctgtg caattctggc actaatgcca ttgtttcagc atattcattg
      901 ataaaatcag ggttgtgtaa aaatgcgttg gttgtcggcg cagacattaa acaaactaat
      961 ggatcacagt tagtatggga tatctcaaga ggatctttta ccttgcctgt ttactgggct
     1021 gcactctttg ctaagtctca catgcgtaaa tatggaacga ctgaagaaca aatggcatcg
     1081 gtagcagtaa agaatagaaa aaatgcttac ttaaatcaca atgcactatt tagaaaaaag
     1141 atatctgtca aggatgtcat gaattcgaaa aaattggttg agccattaaa gttactggac
     1201 tgttcatacg tatgtaatgg agcctcagct atattccttt ccaacgaaga agagtctaaa
     1261 aagtatacag acgtcccagt ttggatcgaa ggaataggaa gctctgttga agctgcgagt
     1321 tttagtaacg ttagctctga cctctcaagc atacattcaa ctagaattgc atccaatatg
     1381 gccttttcaa tgacaaacat caaacctgaa cagatagatg ttgtagagct tcacgacgca
     1441 ttcacaataa tggaaattat ggcctatgaa gacatgggtt tttgtaaaaa aggggaaggg
     1501 ggtaaattcg tattccaaaa aaacatatca atcaatcccc gtggaggact attaggtaca
     1561 ggtcatccct tgggtgctac cggtgttgct cagactgtcg aaatctgtga gcagctaaag
     1621 ggattggctg gaagtagaca gattaaaggc tgcaaaaggg gattagtgca taatatgtct
     1681 gcagcaggtt cctcttcatt agttctgata atatctaaaa cataagtaat tgttgcagtt
     1741 tgtccattgt ccatagtatt tgaaatctct tcaatgtaat caattattga tcattttaat
     1801 tatgtgaatg ttcttaaatt ggcatgaaag aattcattga tttcctaaga aggggaaaat
     1861 tcagaattcc gatttgtaat agttgtaatt caaaaatctg gccgccttca aatatttgta
     1921 ataattgcta ttcaaaaaaa atcaggatgt caaaatcgga aatgagaggg caattaattg
     1981 aacattcatc atcatttatt gggaattcta agaaattagg attagtcgaa atgtcaggga
     2041 tcaggattat cggtatcttg agtgaaggaa acatgaaccc agggagcacg gtaaaattga
     2101 tcaaatgtgg ggttgataag gataacttac cttattttga attctcatct gcttgatacg
     2161 tactgaatga tttaattaat caataattct aagtagacat atcgagatgt catatgatag
     2221 atttgttgat gatagacttc tgacaagtag ggatgtacta aataggaaac agattaagat
     2281 aaaacttgtt gattatgatg agtctgctag ggatttctct caaagatttg gcagtagaat
     2341 tctagttaga aaggtcttgc taacgataaa aaaaactgac acagaggaaa tcgaagaaaa
     2401 agaactagat gttgaagaac tggagaaaag aattaggaaa gaacgacttt ggtcttcctc
     2461 aaatagatgg atttcaaaaa gcgaattaaa aaatggctac attgttgctt ccaggcatct
     2521 tgatcttctt gcaaacgcaa tcgcgttgga tattattcaa ttctagaaat aattttgaat
     2581 gctcacctgt aacaaaaaat aatagtataa aacatgaatt gttatattcc taaattcgaa
     2641 ttttgaaata tttagttatt gtcatgtttg atataaatat tagtaacaac aatcattgat
     2701 gccgcaactt gtccctgttt attcaggtat taattaaagc gccgctgatc agacttgaac
     2761 tgatggccca ctggttaaca gccagttaag ctccaaagta accatctttg aatttgctct
     2821 accatgctga gctacagcgg cgcatatttt acaaaaatta ttacttt
//
LOCUS       DASUMD010000011         4993 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_776030, whole genome shotgun sequence.
ACCESSION   DASUMD010000011 DASUMD010000000
VERSION     DASUMD010000011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4993)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4993)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4993
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_776030"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            242..586
                     /locus_tag="VFX26_00175"
     CDS             242..586
                     /locus_tag="VFX26_00175"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX5572919.1"
                     /translation="MLVDDEIDIIGLFTEILTLNGINVRPFTNSEEALREFEQNHSYY
                     KLVISDVRMSPMSGIEFIKKLREIDANIKVILMTAFEMERSQLREIDTDEFFNKPIAM
                     NNLVQIVKKYVG"
     gene            complement(635..1009)
                     /locus_tag="VFX26_00180"
     CDS             complement(635..1009)
                     /locus_tag="VFX26_00180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572920.1"
                     /translation="MFKDDVSGYMLMRRVHFSHSNTAEDNFSTENVGEDHIHGKNIRP
                     IRLSHLIAFNIKENDDEISGILTIDFEYYSSDGSINYHDMHYSDPRLIKHIEGNPGVM
                     KNIDSYLRKSLLESEYGFKLIS"
     gene            1017..1319
                     /locus_tag="VFX26_00185"
     CDS             1017..1319
                     /locus_tag="VFX26_00185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572921.1"
                     /translation="MKTERVGYYYIFVVIQNSLEKPNIYKYFVVHSALMIQPLLGSEK
                     KPDVYDLAVADGIKEMLVMHGFTRDKILNTMVSNLAETLHIDYYVALIIYNSAKKM"
     gene            1769..3496
                     /locus_tag="VFX26_00190"
     CDS             1769..3496
                     /locus_tag="VFX26_00190"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthetase B"
                     /protein_id="HEX5572922.1"
                     /translation="MCGIAGILNKNNAGVTDDLILMLTCMHNRGPDGVAIQVGQNEIN
                     SLESSESSVPYADGRFGLGHVRLAIVGGQLGRQPFTSCDGRLTLEHNGEIYNYKQIKN
                     RLRSQHRFVSNSDSEVILHFLEEQLVRSGSLVEALTKMAKILDGVYSIAVKDQKTGDI
                     ALVRDLLGVRQLYYSEDPEQVTFASEQKAIWLLGGNKSVKRVMPGHAVIISNKGTLRE
                     YRIADPPRTLDSNKKNFRYNTLEEALKAYKKSLISAMRKRTEGLDRIGIIFSGGIDSV
                     LVAWLAKDMVKEVICYNAGTLDSSDILFADRVAKDLELTLKVNVITKKSTEEMLPKII
                     YAIEDSDALQVEVALPIYSAMALAKKDHVKVVFSGQGVDEIFGGYTWYPKIVASEGYS
                     SLRDHMMEDLFLLYKETLEREDKTTMAHGIEMREPYLDKQVIKTAFDINPRLNVTGPN
                     DKLGKQVHRILADQLGVPKEIAYRSKDAAQHGSGIHFIIDQIARENNFDESRISSDYL
                     RDLEKREVLGSSRRYGFKYGNKELWLTSPHIQLYLDRIFEGVFGKSNSFIDTSDEEYL
                     LTNRIIKKT"
     gene            complement(3553..3948)
                     /locus_tag="VFX26_00195"
     CDS             complement(3553..3948)
                     /locus_tag="VFX26_00195"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX5572923.1"
                     /translation="MVKKEKKQFSIMIIEDEQDILLLYKDYLLSRGHNVVATSTTANE
                     IMSDYDRIRPDVAIIDYKLPADKNGLDAAIQIIEKYPSAAILIVTAYETVTKEIAKIS
                     LFDNKRVEVLIKPLRLAQLENSIVNIVNK"
     gene            complement(4160..>4993)
                     /gene="tfb"
                     /locus_tag="VFX26_00200"
     CDS             complement(4160..>4993)
                     /gene="tfb"
                     /locus_tag="VFX26_00200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019310.1"
                     /note="stabilizes TBP binding to an archaeal box-A
                     promoter; responsible for recruiting RNA polymerase II to
                     the pre-initiation complex; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription initiation factor IIB"
                     /protein_id="HEX5572924.1"
                     /translation="GCGIVLSVEREYIDPLLDTNTNLSNMNLGTPSSLAHHDKNLSTM
                     ISYSNVDADGVAISVDQRSAIQRMRRWNKISNNNRSYHRNLKNAFAVLIRIKDKLSLS
                     ETIIEKSAYYYRKILDQNLIKGRSIKGFVVACVYVSCREMNVPRTIEEIAEISNTDKI
                     FAGKCYRLLVRKLKVRLPSIDSTSHLGRIANNAGISERTLRHAVQMMSQIKDDPISFG
                     KDPCAIAVAVLYGACLDKGEKTSQSRISLAGNVSVVTLRKRFLDIKKIFPQIPNGPND
                     K"
BASE COUNT         1663 a          835 c          899 g         1596 t
ORIGIN      
        1 cgacatttac ttttacactt cccattgata aaaaggataa aaaatagaat tctaattcta
       61 taagtgttag atgaaactaa caaattcatg aatcctgaat tttgcaaata ctttactaat
      121 cacataatca catgcaaatt agaactacaa tttgacaaaa tacttaataa aattgtagcc
      181 tcagaaaaat tatttattct tgaatattat aatgattatg ttgaatcatc gaaccctcgt
      241 gatgttagta gatgatgaaa tcgacattat aggtctattt acagaaattt taacactcaa
      301 cggcattaat gttcgtccat ttacaaattc tgaagaagct ctcagagaat ttgaacaaaa
      361 tcattcgtac tataaactcg taatatctga tgtaaggatg agcccaatgt caggtattga
      421 atttatcaag aaacttaggg aaattgatgc aaatattaaa gtaattttaa tgaccgcttt
      481 tgagatggag aggagtcaac ttagagagat cgatacagac gaattcttca acaaacctat
      541 cgcgatgaat aatctagtcc aaattgtaaa aaaatacgtt ggctaattat tgattttcga
      601 ttctcattta gagacctaat taggctaaat tctatcatga tatcaatttg aaaccatact
      661 cagattctaa cagacttttt ctcagatacg aatctatgtt cttcattaca ccagggttgc
      721 cttcaatgtg ctttatcaat ctgggatcac tataatgcat atcatgataa tttatgctgc
      781 catcagatga ataatattca aaatctattg tcagaattcc agagatttca tcatcatttt
      841 ccttgatatt gaatgcaatt aagtgactaa gcctaattgg gcgaatattc tttccatgga
      901 tatgatcttc accaacattt tcagtagaga aattgtcttc agcagtgtta gagtgactga
      961 aatgcactct acgcattaac atgtaaccgc tcacatcgtc tttaaacatt actggaatga
     1021 aaacagaacg tgtaggatat tactacattt ttgttgttat ccaaaattca cttgagaaac
     1081 ctaacatcta taaatatttt gttgtgcact cggcattaat gatccaacct ttactgggta
     1141 gcgaaaagaa gccagatgtt tatgatttag cggttgcaga tgggatcaag gagatgttag
     1201 tcatgcatgg atttacaaga gataaaattc ttaatacgat ggtgagcaac ttggccgaaa
     1261 cccttcacat cgattattat gtagcgctta ttatttacaa ctcggcaaaa aaaatgtagg
     1321 ctccttttcc atgttttaat tccaacactc ttcaagctgt tagcagtatg ttactatgct
     1381 aagataccat actatttttc taatttctta ttagattcca tttaccctga atttttaaag
     1441 aattttgtat attcctttta attagataca ctgttttata aaatgttctt caagaagata
     1501 taattttttg acatatttca tcatcagaat acacatcttt ccgagatcta acagcaagcg
     1561 atgcctgaaa aaagactatt atataaatta ttttgatcag tgatatatct tggtaatgat
     1621 taatatttaa cctctgttct aatatatata tgaatagtac tgaaaaaacg agatgcgatg
     1681 taacactgat aaatcatgtt gaagagtagt ttgttagggg agatcatttg aattattata
     1741 tacatttgga cgttaattgg agtaaaaaat gtgcggaata gctggtatac taaataaaaa
     1801 taatgcaggt gtaactgacg atcttatcct catgttaact tgtatgcata atcgaggtcc
     1861 tgatggtgtt gcaatacaag tcggacaaaa tgaaatcaat tcattggaat catcagaatc
     1921 ttccgtccct tacgctgatg gcaggtttgg actaggtcat gtaaggctag caatagtggg
     1981 tggtcaatta ggaaggcagc catttacgag ctgtgatgga agactaacat tggaacataa
     2041 cggcgaaatt tataattata aacaaatcaa gaatagattg aggtctcaac atcgttttgt
     2101 tagtaattca gacagcgaag taatactaca cttcttagaa gaacaattag tacgatcagg
     2161 aagtttggtt gaagcattga ccaaaatggc aaaaatatta gatggagtgt atagtattgc
     2221 ggtaaaagat cagaaaacag gagatatagc acttgttaga gatctcttag gagttaggca
     2281 gctttactat agtgaggatc ctgagcaagt aacatttgca tctgagcaga aagctatctg
     2341 gctgttagga ggaaataaat cggtcaagag agttatgccg ggtcatgcag tcataataag
     2401 caataagggg actttaagag aatatagaat cgcagatcct cctaggacat tagattccaa
     2461 caagaaaaat ttccgataca acacccttga agaggccctc aaggcatata agaaatcgct
     2521 gatttcagca atgagaaagc gtacagaagg acttgatagg ataggaataa tattttcagg
     2581 tgggattgat agtgtcctag ttgcatggtt agctaaagat atggtaaagg aagttatttg
     2641 ttataatgca ggtactcttg attcatcgga tattctattt gcagatagag tagccaaaga
     2701 tctcgagttg acacttaagg taaatgttat taccaaaaag agtactgaag aaatgttacc
     2761 aaaaataatt tatgcaattg aagatagtga tgcattgcaa gttgaagttg ctctacctat
     2821 atattctgca atggctttgg caaagaagga tcatgttaaa gtggtattct ctggccaagg
     2881 tgtagatgaa atatttggag gttatacttg gtatccgaaa atagtagcaa gtgaagggta
     2941 ttcatctctc cgggatcaca tgatggaaga tctattttta ctctacaagg aaacattaga
     3001 aagagaagat aaaacaacta tggcacatgg gattgaaatg agggaaccct atttggacaa
     3061 acaagtcatt aaaaccgctt ttgacataaa tccaagactc aatgtaacgg gaccaaatga
     3121 taagcttgga aaacaagttc atagaatatt agcagatcaa ttaggagttc ctaaggaaat
     3181 agcttataga agtaaggatg ccgcacaaca cggatcagga atacatttca ttatcgatca
     3241 aatagcaagg gaaaacaatt ttgatgaaag tagaatctcc tctgactatc tgcgcgacct
     3301 tgaaaagaga gaggtactcg gaagttcacg acggtatgga ttcaaatatg gaaataagga
     3361 attatggtta acttctccac atattcagct gtatttggac aggatatttg aaggcgtttt
     3421 tggaaaatcg aatagtttta tcgatacctc agacgaagaa tatttgttga ccaacaggat
     3481 aataaagaaa acctagatcc ttttgatcaa attaccccga tcaaattgga tgaatggaaa
     3541 ctaggtgtaa ttctacttgt tcacaatgtt gacaatagaa ttttctagtt gtgcgagcct
     3601 cagtggcttt atcaaaactt ccactcgttt gttgtcaaaa agagaaattt ttgcaatctc
     3661 tttagttaca gtctcatatg cagtaactat cagaattgca gcggacggat atttctctat
     3721 aatttgaatt gctgcgtcta gtccattctt atcagcaggt agcttataat caattattgc
     3781 aacatcgggc ctaatcctat catagtccga catgatttcg tttgcggttg tagatgtggc
     3841 aactacatta tgacctctac tcaaaagata atccttatag agcagaagga tatcttgttc
     3901 atcttctata atcataatac tgaattgttt tttttctttc ttgaccattt gtaagtgttt
     3961 ttgtgtaagc tataatatta ctttaatgtc gccataacag taaaaataaa ataataacgc
     4021 ccaatatgaa attcgtttaa tattaggata gaatataaat caatgtcacc tgtcaccttt
     4081 gtaactacac ggaacaccta gcttccaaat accaatttaa taattatcct cggctgagaa
     4141 ttatgaccta agtcatttgt cacttatcgt taggaccatt tgggatttga ggaaaaattt
     4201 tcttgatgtc aagaaatctt ttcctaagtg ttactacact tacgtttccg gccaatgata
     4261 ttctagattg actcgtcttt tctcctttat caagacatgc tccatataat accgcaacgg
     4321 cgattgcaca cggatctttt ccaaaggaaa taggatcatc ttttatctgt gacatcatct
     4381 ggactgcgtg tctaagagtc ctttcactaa tgcctgcgtt attggctatc cttcccagat
     4441 gagacgtaga atctattgaa ggaagtcgaa ctttgagttt cctaacgagg agtctatagc
     4501 actttcctgc aaaaatcttg tctgtattgg atatttcagc aatttcttct atagttcgtg
     4561 gcacattcat ctccctacag gacacatata cacaagcaac tacaaacccc tttattgatc
     4621 tcccttttat tagattttga tctaggatct tcctgtagta ataggctgat ttttctataa
     4681 tggtctcact tagggaaagt ttatctttta ttcttatgag aacagcgaaa gcattcttaa
     4741 gatttctatg ataactccta ttattgttgg atatcttatt ccatcttctc attctctgta
     4801 ttgccgatcg ctgatcaaca cttattgcaa caccatctgc atccacgttc gaataagaaa
     4861 tcattgttga cagattttta tcatgatgcg ccaatgatga tggagtgccc aaattcatgt
     4921 tacttaaatt tgtatttgta tctaacaatg ggtcaatata ttcccgttcc acagaaagta
     4981 caattccgca gcc
//
LOCUS       DASUMD010000012         3032 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_776139, whole genome shotgun sequence.
ACCESSION   DASUMD010000012 DASUMD010000000
VERSION     DASUMD010000012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3032
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_776139"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            142..927
                     /locus_tag="VFX26_00205"
     CDS             142..927
                     /locus_tag="VFX26_00205"
                     /inference="COORDINATES: protein motif:HMM:TIGR02772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0045027 - DNA end binding [Evidence IEA];
                     GO_process: GO:0006303 - double-strand break repair via
                     nonhomologous end joining [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ku protein"
                     /protein_id="HEX5572925.1"
                     /translation="MPARSLWQGSISFGLVNIPVKLYTATNSREYVFNQLCQKGHRIR
                     YKKWCPEEEREVPYSEIKKGYEIEKDNYIVFEKEELNKVKLKTTHSIDIKEFIEYKEL
                     DPILIDNSYYVATDPKKGNEKAYALLVKILNDNNLVAIGKVILKDRENVVALRPYQRG
                     LVMHVLNYLDDMKPVDEIPEMGNTKSKLDPQELSLGKILVQKYRSKEFDIGDYSDTYV
                     QELRKLIEAKSKGKKFVSSAPKETKPTKDLLEALKASIETKKN"
     gene            complement(1112..1543)
                     /locus_tag="VFX26_00210"
     CDS             complement(1112..1543)
                     /locus_tag="VFX26_00210"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ester cyclase"
                     /protein_id="HEX5572926.1"
                     /translation="MSVEENMKLMKTLDDAWNSQDWETFGERHADDVIVRWPGQPPTI
                     GIEEHKIEGEYFFRAFPDNHVENNPYKVFFGQGDWTCSIADFTGTHKGLMKGLDDEMI
                     PATNKKFKIDFCTVARWKDGRIVEENLFYDTVGMMRQLGLI"
     gene            1921..2196
                     /locus_tag="VFX26_00215"
     CDS             1921..2196
                     /locus_tag="VFX26_00215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572927.1"
                     /translation="MGRAILTIFIVAAGILSILSGVMLTHVISQNMMDLDIKGLNIIN
                     TTNDERETGSNPIAQYAPSPPVTEENENIGRIANLPNKCLGSALCPD"
     gene            complement(2351..>3032)
                     /locus_tag="VFX26_00220"
     CDS             complement(2351..>3032)
                     /locus_tag="VFX26_00220"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX5572928.1"
                     /translation="ENLPIEIIQLDVTSDESVSHAIESILSESGTINVLVNNAGYGLV
                     GAFEELGMDEIKQQYETNFFGVIRVTQAVIPIMKEQKSGIIVNISSGAGRFGYPGGSA
                     YVSTKFALEGLSESMAYELDRFGIKVALVEPGFVRTNFSNVIAKRSQEPNSEYSKMME
                     IMARRIEDMRKNSSSPELVANTVLEAVTSKNPNLRYLAGKDVEQWIRQKKKLSDKEFF
                     NMIKESML"
BASE COUNT         1009 a          579 c          498 g          946 t
ORIGIN      
        1 ttattgtgat caagttattt aagatattaa gatatagctt taccagagca gtagataatg
       61 tctgaaggcg aattttatgg aagtaaatca aatgcattta tggtgagctg ttataatctt
      121 tgttgaccac aattataata catgccagct agaagcttat ggcaaggtag tatctccttt
      181 gggcttgtga atatcccggt taaactatat acggcaacaa acagcaggga atacgtcttt
      241 aatcaactat gtcaaaaggg tcacagaatt agatacaaaa aatggtgtcc agaggaagaa
      301 agagaagttc cttattctga aataaaaaaa ggttatgaaa tcgaaaaaga caattacata
      361 gtattcgaaa aggaagaact aaacaaggta aaattaaaga caacccattc catagatatt
      421 aaggaattca ttgaatacaa ggaactagat ccgatcctta tagataacag ttattacgta
      481 gccactgatc caaaaaaagg aaacgaaaag gcttacgcac ttttagtgaa aatattaaac
      541 gacaataatt tggtggcaat aggtaaggtc attcttaaag atagggaaaa cgtggtagcc
      601 ttgagacctt accagagggg tcttgttatg catgtcttaa attacctgga tgacatgaaa
      661 cccgtagatg aaataccaga aatggggaac acaaagtcaa aactagaccc gcaagaactt
      721 tcgcttggca aaatactggt gcaaaaatat cgcagcaagg aatttgatat tggtgattat
      781 tccgacactt atgttcaaga acttagaaag cttatagagg caaaaagcaa agggaaaaaa
      841 tttgtttcat ccgctcctaa ggagacaaag cccaccaagg atcttcttga ggccctcaag
      901 gccagcatcg aaacaaagaa gaattaagat tttgttacct tttactacag atacttaatt
      961 ttaatatcaa agtactttgt attatgtttc tatcacagca tattatttta ttattttggc
     1021 tagagatcag atagcaaaaa ttaatgtaat ctcaaatgat tttgtgaatt ccaattctga
     1081 tactagactt cagatttcct ttgtttatca tttatatcaa accaagttgt ctcatcattc
     1141 cgaccgtatc atagaataga ttttcctcaa caattctacc gtccttccaa cgagcgaccg
     1201 tgcagaaatc tatcttgaat ttcttgtttg tagctggaat catctcgtca tcaagaccct
     1261 tcataagacc cttgtgagta cctgtaaaat cggctatcga acaagtccaa tcgccctgac
     1321 cgaagaaaac cttatacgga ttgttctcta catgattatc aggaaatgct ctgaaaaaat
     1381 actcgccctc aattttatgc tcttctattc ctatagtagg tggttgaccc ggccatctta
     1441 ctatcacgtc atcagcatga cgttcaccaa aagtttccca gtcctgtgaa ttccatgcat
     1501 catctaaagt cttcatcaac ttcatatttt cttcaacgct catgaacaac atatcactca
     1561 aaaatagaaa agtctttcat gaattaactt cagtattcgt ggtttttgct ggctatataa
     1621 gtcctctata atcataaaaa ttctaaatgt catgcgatga cccgaataca tgcacggttc
     1681 aaatcccgac ggaataatga aataaaattc taatatcaaa cataccaatg gtttggtatt
     1741 agtaaagaag acatcttact agacttaaag tgttcgattc accatctata acttgtgaag
     1801 ctaaaaataa gtgaaatgga gctaattaaa atgaagatat tactagatac ttcgttctta
     1861 ggacaatatc aaattacaaa atcaaaacat ggagaaccaa acaccttaga gttgaaataa
     1921 atgggcagag ctatcctaac gatttttatc gtagcagcag ggatactctc aatcctttct
     1981 ggtgtgatgc ttacacacgt aatttcacaa aatatgatgg atcttgatat taaaggactg
     2041 aatataatca atacaacaaa tgatgaaagg gagaccggct caaatcccat tgcacaatat
     2101 gcaccgtcac ccccagtgac agaagaaaat gagaacattg gtagaattgc aaatctgccg
     2161 aataaatgct taggttccgc actttgtcca gactaggatc aaagttcgtt gcgtgattta
     2221 atttttcgaa gaataatact cactaaatag ttttattttc tttcatataa ttattgtcct
     2281 tacagcattt tggacaattc atgttcacaa gtccttttga aatagtgtct gacaaaatat
     2341 tctctttttt tcataacatg gattctttaa tcatattaaa aaattcctta tccgataatt
     2401 tcttcttctg tcttatccat tgctcaacat cttttccagc cagatatctc agattaggat
     2461 ttttagatgt tactgcttct aatactgtat ttgctacgag ttctggtgaa gagctatttt
     2521 tcctcatatc ctctattctt ctagccatta tttccatcat ttttgagtat tccgaatttg
     2581 gctcttgtga tctcttagct attacattgg aaaagttagt tctaacgaat cccggttcca
     2641 ccaaggcaac ttttatgcca aaacgatcaa gttcgtacgc catagactca ctaaggcctt
     2701 ctaacgcaaa tttggtacta acatatgcag agccaccggg gtagccaaat ctaccagcac
     2761 ctgaacttat atttactatt attccggatt tttgttcctt cattatggga atgacagctt
     2821 gggttactct tattactcca aagaagttgg tctcatattg ttgttttatc tcatccatcc
     2881 caagctcttc aaatgctcct accaatccat agccagcatt attaactaat acatttatcg
     2941 ttcctgattc tgatagaatt gattcgatcg catggcttac tgattcgtca ctagtaacat
     3001 caagctgaat aatttcaatt ggcaagtttt ct
//
LOCUS       DASUMD010000013         4309 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_667041, whole genome shotgun sequence.
ACCESSION   DASUMD010000013 DASUMD010000000
VERSION     DASUMD010000013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4309)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4309)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4309
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_667041"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(39..1589)
                     /locus_tag="VFX26_00225"
     CDS             complement(39..1589)
                     /locus_tag="VFX26_00225"
                     /EC_number="6.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016874 - ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA carboxylase subunit beta"
                     /protein_id="HEX5572929.1"
                     /translation="MINSGTMNSELDTKRKVHHLGGGKEKQDQQRKKGKLNAFERTGA
                     IFDPGTFVELDPFVLHDCDEFGLEDKKNLGDGVLTGYGLIDGRLVYSFLHDFTVLGGS
                     LGLAFSSKVCKIMDLAMKQGAPIIGINDSGGARIQEGVRSLAGYADIFHRNVQASGVV
                     PQISVIVGPCAGGAVYSPAITDFIIMTKSAYMFVTGPEVVKEVTKENVNFNDLGGASV
                     HNEKSGVAHFVAEDELDCFTLLRRLLSFFPSNNLENPPRIEPQDDPKRQNEELNSVLP
                     SSSHQPYDMHEIIRKIVDNYDFLEVQRHWAKNIIIGLARLDGNTVGVVANNPQVLAGV
                     LDIDSCDKAARFVRFCDCFNIPLIALVDVPGFLPGTSQEWGGIIRHGAKLLYAFSEAT
                     VPKFSIITRKAYGGAYCVLNSKHIGADYNFAWPSAEIAVMGPEAACNIIFKKEISESQ
                     TPDQRRKEFAEDYRIKFSNPYVAASRGYIDDVIEPEQTRPRLISSLKSIYKKRIGRPL
                     RKHGNIPV"
     gene            complement(1939..3573)
                     /locus_tag="VFX26_00230"
     CDS             complement(1939..3573)
                     /locus_tag="VFX26_00230"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF013323.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-transferase"
                     /protein_id="HEX5572930.1"
                     /translation="MSMMNKVTESASVFSQIKDNCVIAISGFNLATTPEYLILELYRH
                     YNEFGHPKNMFIVSDALPAVPNRALDSIAETISKDENQEFLRGMLMPFLGFSPWLQKL
                     VIDDRIEFYGWPIGITAYWFREVASGRPGLITKIGIGTFLDPRKEGGALNEMATRKMS
                     CKINIINIENQDYLLYQAPKPDYALIRATTADESGNLSMEDEGIRGTVLAIAQATKAR
                     PNQGTVFAQTRWLTKMSTINPRDVDIPSPLVDYIIISPQKYHWQSGTIEYDPRISYRT
                     IPPITEKLVAEINTKPIVQFERIIARRILIELIKLFKVKGSPVLVNLGIGIPALVSSV
                     AAEENLADFIVTVIESGPWGGIALSGTNFGQAISPFALSTIPDMFSNFEGGIIDVASL
                     GFLQVDKYGNVNPSILSDRIFGPGGFPVIAGGAPKNYFAGAFTAGPKVIDIVNNRLSI
                     VHDGSPKFVDNVYKIIFSGDEAMKYEKEILYVTERAVFKLTEKGLTLEEVSPGVDIDR
                     DILSKMEFRPIIATPLKLMDERLFGAGKLGLREEIF"
     gene            3701..3973
                     /locus_tag="VFX26_00235"
     CDS             3701..3973
                     /locus_tag="VFX26_00235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572931.1"
                     /translation="MGDRKSTSERVQGKEKVEANPLKKLVYSIPMNVEDKVVLEDMIN
                     KLSQEADTMLYIINDIPKRHQKQVLLGYKTMLQSVVEGVNHRLKSL"
     gene            complement(4085..>4309)
                     /locus_tag="VFX26_00240"
     CDS             complement(4085..>4309)
                     /locus_tag="VFX26_00240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572932.1"
                     /translation="VLVEKVLEFAKDGVTKKDIMEKFNLSRPIVRRLTAELVGKDLLR
                     QHVALNLLVTTARGNVYLKRVRSRKQNSIL"
BASE COUNT         1283 a          882 c          799 g         1345 t
ORIGIN      
        1 gggtttggct acttttcaac ggaacaaaat aagtaggcct aaacaggaat attaccatgt
       61 tttctgagcg gcctaccgat ccttttttta taaattgact tgagagaaga tatcaatcta
      121 ggacgtgtct gttccggttc tattacatca tcaatatatc cacgcgatgc agctacgtat
      181 ggatttgaga atttaatcct atagtcttca gcaaactcct ttcttctttg atccggtgtt
      241 tgtgattcgg atatttcttt cttgaagatt atgttacaag ccgcttcagg acccataacc
      301 gcaatttcgg cgctaggcca tgcaaagtta tagtctgctc ctatgtgctt gctgtttaat
      361 acacaataag ctccaccgta agctttacgc gttatgatac taaatttcgg aacggtggct
      421 tccgaaaaag cgtacagaag ctttgctccg tgccttatta ttcctcccca ctcctgagag
      481 gttccaggta gaaaaccagg gacatcaact aatgctatta gagggatatt aaaacagtca
      541 cagaatctaa caaaccgcgc agctttatcg caagagtcaa tatctagtac ccctgcaaga
      601 acctgaggat tgttagccac gacgccaacg gtattgccat caagtcttgc taatcctatt
      661 atgatgttct ttgcccagtg tctctggacc tcgagaaaat cgtaattatc aacgattttc
      721 ctaataattt cgtgcatatc atatggctgg tgtgagctgg aaggaaggac tgaatttaat
      781 tcttcattct gtcgcttagg gtcgtcttga ggttctattc gtggtgggtt ttcaagatta
      841 tttgaaggaa aaaaagaaag taatcttcga agaagtgtaa aacaatctag ctcatcctcc
      901 gcaacaaaat gtgcaacacc acttttttcg ttatggactg aagcacctcc aagatcatta
      961 aagtttacat tttcttttgt tacctccttt actacctccg gtcctgtgac aaacatgtat
     1021 gccgacttgg tcatgattat aaaatctgtt atcgcaggag agtaaactgc tcctcctgca
     1081 caagggccta ctataactga aatttgaggt actactcccg atgcttgaac gttcctgtgg
     1141 aaaatatcag cataacctgc aagacttcta actccctcct gaatacgggc tcctccagaa
     1201 tcattgatcc ctataatggg tgcgccctgt ttcattgcaa gatccattat cttgcagacc
     1261 tttgaagaaa atgcgagacc caaagatcct cctagtacag taaaatcatg taggaatgag
     1321 tagaccaaac ggccatcaat caaaccgtat ccagttagta ctccatctcc cagatttttt
     1381 ttatcttcca gtccaaattc atcgcaatcg tgaagtacga acggatcaag ctcaacgaaa
     1441 gttcctggat cgaaaatcgc accggtcctt tcaaaagcat tgagcttgcc cttcttccgt
     1501 tgctgatcct gtttttcttt gcctcctcct aaatgatgca cctttctttt agtgtcaagt
     1561 tcagaattca ttgttccaga attaatcatg aacactaaaa ggttttttga tgactttcaa
     1621 gtcaaggtaa gcggcgaatg cccattctaa gtgataaaat aatgataata tattgcatta
     1681 gataggataa tcaatttgga taaatctgga attgtgagaa cgtatagcca caatccattt
     1741 gggaagtagt ctattagaag gaaatctaag aaaatgtaat taaatacgat ctatttaaca
     1801 tctcaacaac attaaatcct aatttagcag gcaacttgca aattagcaaa tgacttgatt
     1861 cgcctgcttt gactttggct acacatgggt aagtgttcga gggatgagaa catccgaaac
     1921 aagaatcaaa ttctaaaact aaaaaatctc ctctctcaga cctaatttac cagcaccgaa
     1981 aagtctctcg tccattagct ttaatggagt agctatgata ggcctaaatt ccattttaga
     2041 cagtatatct ctgtcaatat caacgcctgg tgaaacttct tcgagagtca gccctttttc
     2101 ggtcaactta aagacagctc tttctgttac atatagaatt tctttttcat atttcatagc
     2161 ctcgtctccg ctaaaaataa tcttatagac gttatcaacg aatttcggag aaccgtcatg
     2221 gacaatggat aatctgttat ttacaatatc aattactttt ggtccagcag taaatgcccc
     2281 tgcgaaatag ttttttggag ctccaccggc gattaccgga aatcctcctg gaccgaagat
     2341 tctatcggat aatattgaag gattaacgtt tccatattta tcaacttgaa gaaaacccag
     2401 ggaggcgacg tcaattatcc ctccttcaaa attagagaac atatcgggga tggtcgaaag
     2461 agcaaaaggg cttatggcct gaccaaaatt agttcctgac aatgcgatac cgccccaagg
     2521 accagattca attactgtta caatgaaatc cgctaaattc tcctctgcgg caactgatga
     2581 tactaaggcc gggatgccaa ttcccaagtt tactaacaca ggagaacctt taactttgaa
     2641 tagctttatt agttcgatga ggattctcct ggctattatc ctttcaaact gaacaattgg
     2701 ttttgtattg atttctgcga ctagtttttc ggtaataggt ggtatcgttc ggtaagagat
     2761 acgaggatcg tattctatgg ttccagattg ccagtgatac ttttgtgggg aaataataat
     2821 ataatccacg agaggactcg gaatatctac atctcgaggg ttaatagtgg acatcttggt
     2881 taaccatctt gtttgagcga aaacagtacc ttgatttggt ctggcctttg ttgcttgagc
     2941 tatagcaagt actgttcctc tgataccttc atcctccatt gacaagttac cactttcatc
     3001 ggctgttgtt gccctaatta aggcataatc aggtttaggg gcttgataga gtaggtaatc
     3061 ctggttctca atgtttatta tgttaatttt gcaggacatc tttctggttg ccatttcatt
     3121 taaggctccg ccctcttttc ttggatccaa gaatgtaccg atgcctattt ttgttattaa
     3181 tcctggtcgc cctgacgcca cttctctaaa ccagtacgca gttatgccaa tcggccatcc
     3241 atagaactca attctgtcat caatcacaag cttttgaagc catggtgaaa atcccagaaa
     3301 aggcatcaac ataccccgta gaaattcttg attttcatct ttggatatgg tttcagcaat
     3361 tgagtcaaga gccctgttag gtactgcagg aagtgcatct gacacaataa acatattctt
     3421 tggatgtcca aattcattgt agtgtctgta tagttcaaga ataagatatt caggggtggt
     3481 ggctaggtta aagccagaaa ttgcaattac gcaattgtct ttgatttgtg aaaaaacaga
     3541 ggcggactca gtaaccttat tcatcattga catattcggt aatggtgacc aatattttaa
     3601 gaatctgcca taaaaaggcc aatcctaata catgtatgat tacttattcg taactataga
     3661 aaatagataa atcctatgtg tttcgtatta ttcaattaat atgggagacc gtaaatcaac
     3721 cagcgaaagg gttcaaggga aagaaaaagt tgaagccaat cctctaaaaa aattggttta
     3781 ttcaattccc atgaacgtgg aggataaagt cgtattggag gacatgataa acaaattatc
     3841 tcaagaagct gatactatgt tgtatatcat aaatgatatt cctaaacgac accaaaagca
     3901 agtattgctt ggatataaaa caatgttaca aagtgttgtc gaaggcgtaa atcatagact
     3961 taaaagttta tgagccattc tattatatgg cttttttcaa agatattggc atttgcttat
     4021 gacccatttt cattttctgt tactagtgat aatataggat tccgacaaga attaaatgtt
     4081 cagattacag tattgaattt tgttttctag agcgcactct tttaagatat acattgcccc
     4141 tcgctgttgt taccaacaag tttagggcaa catgttgtct caataaatct ttaccaacaa
     4201 gctccgctgt aagcctccta actataggtc gcgacaaatt gaatttttcc attatgtctt
     4261 tcttggttac tccatccttt gcaaattcta aaactttttc tactagcac
//
LOCUS       DASUMD010000014         2984 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_224898, whole genome shotgun sequence.
ACCESSION   DASUMD010000014 DASUMD010000000
VERSION     DASUMD010000014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2984)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2984)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2984
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_224898"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            266..340
                     /locus_tag="VFX26_00245"
     tRNA            266..340
                     /locus_tag="VFX26_00245"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:301..303,aa:Val,seq:tac)
     gene            398..2200
                     /locus_tag="VFX26_00250"
     CDS             398..2200
                     /locus_tag="VFX26_00250"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX5572933.1"
                     /translation="MTLISGKLMYIGVISVIIIAVASYGLFFFFQRVNEKSIRESVFE
                     QELERQINSTKSISLHVSSDLRLVTSMLQDLADSIYLQNEMLSGDKVSKVLEEKFKQL
                     NSVTKVDSLLITDNEGIITIHKASKGLETFVNIDISSNEYMKQTKESLQPVYSDGFTG
                     IDGKYRIVITYPITSVDDGHYIGTVVANLPTIEFFKNYGNVNDINSQFLVAFDTKGNL
                     LAVGASGDLVGKNFFGNETQQFINYNKELNNLTQYLLAGNIGHAMYDYGRGERLNTQS
                     PILVETKPIYFLQVVTPTDRIYLKINSVLFTEGIKMFSLLTGTTAAIIVLVFLLRKWY
                     SILQEEVTKRTRDLNESNYKLMKANESLKIKDEAQNQFINVAAHELRTPIQPILNAIY
                     LLQSSNLSILKKNQYMDIIKRNTEKLGSLAEDILDVTRIESNSLKLMNEQLNLYDLIL
                     NSIEEYRRDIQLIYKDLTVNYENSNKSIYVRGDKMRLSQVLHNLLDNAGKFTKKGSIT
                     VTTVIKSDKVQVTVKDTGIGIHPEIFPKLFSKFVTKSDRGTGLGLFISKSIIEAHGGN
                     IWAESDSQQKGATFIFTLPLLNQDNIEHQNDRNE"
     gene            2184..>2984
                     /locus_tag="VFX26_00255"
     CDS             2184..>2984
                     /locus_tag="VFX26_00255"
                     /inference="COORDINATES: protein motif:HMM:NF014647.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMP family protein"
                     /protein_id="HEX5572934.1"
                     /translation="MTGMNKGIRIGHLLAQKSFVGITIIITLSLLVVMCHCDFFQDAY
                     AQIQNQSIQTSIPDDKPPRIAYLTDGRFSDAGWGAFAYNAGQEIISKYGYEVSFLDNV
                     SISNIETTLKSYADSNYDIIIAQGYEWGDPVIKVAKEYPDIKFVVFTGLVKSENVASI
                     FPKQQEATYLLGALASMLSKNHTIGFVGGDEKYPNLKNIYEGYKQGALHVNSTTKVLV
                     TYLSDWDNETKGKLAALSQIKQGADFILHVADTSGQGVINAAKEKGIYA"
BASE COUNT         1059 a          464 c          557 g          904 t
ORIGIN      
        1 ttgtaaagtt gagcatcatc aataaaagat tcataatggt cttgagtctc gtttactaat
       61 tgttttaatt tttcactcaa aactccaagc gtatcgacac caaatgacat aattagtgaa
      121 ttagctatgc agtttaataa aagtttgaat ccaataaaaa aaacaattaa aaatacttaa
      181 attggaaaca tgtaatgctc aatgttttga ttaattcaaa tagcccctga atattatatt
      241 ttgtttgacc aggattcaaa ttgatggagg ggtggtctag actggttatg atacctgcct
      301 tacacgcagg tggtcatggg ttcaaatccc atcccctcca tactgataac gattaataca
      361 gattaaatac cgctgtgaaa catcaactgg atatctaatg acactaattt ctggtaaact
      421 gatgtatata ggtgtcatat ctgtaattat aattgctgtc gcttcatatg gattattttt
      481 tttctttcaa agagtcaacg aaaagagtat tagagaaagt gtattcgaac aggaactgga
      541 gaggcagata aattctacca agtcaatttc actgcatgtt agctccgatc ttcgcttagt
      601 tacttctatg ttacaggatt tggctgattc aatatattta caaaatgaaa tgttatcagg
      661 agacaaggtt agtaaggtac ttgaagaaaa atttaagcag cttaattctg tcacgaaagt
      721 agatagtctt ttaattacag ataatgaagg catcataact atccacaagg catcaaaggg
      781 cttggagact tttgtgaata tagatatctc atctaatgag tatatgaaac aaacaaaaga
      841 aagtcttcaa cctgtatact ctgatggctt tacaggaata gacggtaagt ataggatagt
      901 gataacctat ccaataacaa gtgtagatga tggtcattat ataggaacag tagtggcaaa
      961 tctacctacc attgaatttt tcaagaatta tggaaatgtc aatgatataa attcacagtt
     1021 tttagttgcc ttcgatacaa agggaaatct tcttgccgtg ggagcaagtg gcgatcttgt
     1081 gggaaagaat ttctttggca atgaaacaca acagtttatc aattacaata aggaattgaa
     1141 caatctgaca caatatttgt tggctgggaa tattggacat gcaatgtatg attatggaag
     1201 gggggagaga ctgaatactc aatccccaat attagttgaa acaaaaccta tatatttcct
     1261 tcaagtagta acgccaacgg atagaatata tttgaaaata aattcagtcc ttttcacaga
     1321 agggataaag atgttctcat tacttactgg aactactgcc gcaataatag ttttagtttt
     1381 tcttttaaga aaatggtata gcatattaca ggaagaagtt acaaaacgaa ctcgcgattt
     1441 gaatgagtca aattacaaat tgatgaaagc aaatgaatct cttaagatta aggatgaggc
     1501 acaaaatcag tttatcaatg ttgcagctca cgagcttcgg actcccatac agcctatcct
     1561 caatgccatt taccttttgc aatcttcaaa tttgagcata ttgaagaaaa atcaatatat
     1621 ggatatcata aagagaaata ccgaaaaatt aggaagcctt gcagaggata tacttgatgt
     1681 taccagaata gagagcaatt ctttaaaatt aatgaatgaa caacttaatt tgtacgatct
     1741 aatattaaac agtattgaag aatataggag agatattcag cttatttata aggatcttac
     1801 ggtaaattat gaaaattcaa ataaatcaat ctatgtgaga ggtgacaaga tgagattaag
     1861 tcaggtattg cataaccttc ttgataatgc tggcaaattt accaaaaaag gatcaattac
     1921 ggtcacaaca gtaatcaaat cagataaagt tcaggttact gtaaaagata ctggaattgg
     1981 aatacatcct gaaatatttc ccaaattatt ttccaaattt gtaacaaaat ccgacagggg
     2041 aactgggctg ggtttattta tttcaaaaag cattatcgaa gcacatggcg gcaatatttg
     2101 ggccgaaagt gattcccagc aaaaaggggc tacttttatc tttacactac cacttttaaa
     2161 tcaggacaat attgaacatc aaaatgaccg gaatgaataa aggaatacga attggacatt
     2221 tgttggctca aaaatcattc gttggcatta ccataattat tacacttagt ttgcttgtag
     2281 tgatgtgcca ttgtgatttt tttcaagatg cgtacgcgca gattcaaaac caatcaattc
     2341 aaacttctat tccagatgat aaacctccaa ggattgctta tttaactgat ggtcgtttta
     2401 gcgatgccgg ctggggagca ttcgcttaca acgctggaca agaaataatt tctaaatatg
     2461 gttacgaagt tagtttcttg gataacgtat caatatcaaa tatagaaacg actcttaaaa
     2521 gttatgcaga tagtaattat gatattatca tagctcaagg atacgaatgg ggagatcctg
     2581 ttattaaggt cgcaaaagaa tatcctgata taaaatttgt cgtatttacc ggactagtaa
     2641 aatctgaaaa tgtggcttca attttcccaa aacaacagga agctacatat cttcttggag
     2701 cacttgcaag tatgctctca aaaaaccata ctattggttt cgtcggagga gacgagaaat
     2761 atcctaattt aaagaatatt tacgaaggtt ataaacaggg agctttgcat gtcaattcta
     2821 ctaccaaggt acttgtgact tacttgagtg attgggataa tgaaactaaa ggaaagttgg
     2881 cagcattgtc tcagattaaa caaggtgcag attttatttt gcatgtagct gatacatctg
     2941 gccagggagt gatcaacgca gctaaagaga aaggaatcta tgca
//
LOCUS       DASUMD010000015         3685 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_998810, whole genome shotgun sequence.
ACCESSION   DASUMD010000015 DASUMD010000000
VERSION     DASUMD010000015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3685)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3685)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3685
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_998810"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(5..427)
                     /locus_tag="VFX26_00260"
     CDS             complement(5..427)
                     /locus_tag="VFX26_00260"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX5572935.1"
                     /translation="MQHVIIKACTKIQGPIDLTDVSMKIMVIDDDQDILNLFTDFLSK
                     TGYDVASYLDPLVAVKEIEDNPHRYALVITDIRMPGISGIELIKRVCELNTDIKIILM
                     SAFEINGDDLKELRYDKQVQKPIHLRALVQTIDKLLKN"
     gene            complement(770..1000)
                     /locus_tag="VFX26_00265"
     CDS             complement(770..1000)
                     /locus_tag="VFX26_00265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572936.1"
                     /translation="MSNITNWDDIVKKEARGINDYDLGEVHEVDPEIVVTKKGLVDKD
                     KFYLPKSLVERYDGHKVYFSITKEDAQNYRKD"
     gene            1209..2210
                     /locus_tag="VFX26_00270"
     CDS             1209..2210
                     /locus_tag="VFX26_00270"
                     /inference="COORDINATES: protein motif:HMM:NF013694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CorA family divalent cation transporter"
                     /protein_id="HEX5572937.1"
                     /translation="MSTILSYNKDQVKVDGSIEDLKEGFSVWVDVIDPDEKELENLSQ
                     KFSLNQDAIQTCVNKSKKPEIRQLDSHTFTVVVDMKNKDPETLLIEAVYFFLGKNWLL
                     TIHSNEVNLKQIGERLFNIQNETIKQRRIDALYYNILAGLVSKYEQLLTALELSVNEY
                     QRRSFVRPFPAIFESIDILSRQAIMLRRQFWHVRNIINFLLHMEKDKEDVKYIEMVYD
                     DISQLIDFVESYEGTINSIRELYVAKVSLQINETMRILTIFTVILLPLALIAGIYGMN
                     GIDLKNITEIPLGFLVVLVTMVFMVVGFVLFFIKKRWILVGRENSEKESKSVNKSAD"
     gene            2716..>3685
                     /locus_tag="VFX26_00275"
     CDS             2716..>3685
                     /locus_tag="VFX26_00275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572938.1"
                     /translation="MSSPYQEKTQVVTNRKQSDIIADVISNAEQTLNICGDSASPDFT
                     LTGRIRKALQQAKLKGIKIRYVTEITKDNMSSCKQLMKFAEVRHLDKVVGNFLVSDKE
                     YFGRSSGNNFLSNQVYNDNHGMVEQQNYIFEILWNNAVTQHDKISSIEVGVDPDEVKV
                     LSDPFEIRRTYLNLIQSANSEISLIIATPKALQRNYRGGIISMLVEASEKKNVSVNLV
                     IPTYENDKIQDDFLHTKSLAKNFRFRIKSIVPTTTQTHKIKTTFLITDKKSVLIIDVK
                     DDNKDNFIEAVGYATFHTSKSRTESYNFIFDTIWRQADLYESLREAN"
BASE COUNT         1279 a          599 c          637 g         1170 t
ORIGIN      
        1 ctacttaatt tttcaatagc ttgtcaatgg tctgaacaag ggcccgcagg tgtatgggct
       61 tttgaacttg tttatcatac cttaactcct tcagatcgtc cccatttatc tcaaaagcac
      121 tcattagtat tattttaata tctgtattta gttcgcagac tcttttgatt aactcaattc
      181 cagagatacc aggcattcga atgtctgtaa taacaagtgc gtagcggtga gggttatctt
      241 caatttcctt tacagctaca agtggatcca agtacgaagc aacatcatat cctgttttac
      301 taaggaagtc agtaaataag ttcaaaatat cttgatcatc atcaataacc ataattttca
      361 ttgatacatc agtcaagtcg attggtcctt gtatttttgt acaagccttg atgatgacat
      421 gctgcaattt tgattatggg attgacgagg tatatcaaca aataatcgcg atattaccaa
      481 tacatagtat ctttgactca gaactataat aattttacta caaagccgga aaatgtagaa
      541 gaaattgtta gactattttt tggtcagaag gcataataaa ttatgtaaaa caagactatc
      601 aatagtttct ttgattgtta aatgaaatcc aatttaatta tccctaactt gaaacaatcc
      661 gaaaaatctg aatatgagag aaatattgtt tctatggtaa ggtagtattc ctcgtcgtgc
      721 agattttatc ctctagttaa aataaaaaaa atggacccat aagatagaat tagtctttcc
      781 tatagttttg ggcgtcctct tttgtaatgg agaagtaaac tttatggcca tcgtagcgct
      841 ctactagact ttttgggaga taaaatttgt ctttgtctac aagtcctttt tttgtaacga
      901 caatttctgg atctacctcg tgcacctcac ccaagtcata gtcatttata cctcgtgcct
      961 ctttctttac gatatcgtcc cagttagtta tgttgctcat gagatatatg gttcaacatt
     1021 tgtaataagc attcaagtca ctcggatggc aatgggcaat gtcgtcaaag aattttcaat
     1081 ggtgaaaatt ttcttcaaaa cattctataa ttgcccctat tgtttattgc agtgctaaaa
     1141 aaatcaggta tattttcccc atcacaattt ttatattttg ttgatgatat taaatacaaa
     1201 gatttgaatt gagtactata ctttcttaca ataaggacca agtaaaagta gatggttcta
     1261 ttgaagattt aaaagaagga tttagcgtct gggtggatgt gatagatccg gatgagaagg
     1321 aactcgagaa tttatctcag aaatttagtt taaatcagga tgctattcaa acctgcgtta
     1381 ataaatcaaa aaaaccagaa attcgtcaac tagatagcca tacttttaca gtcgtagtag
     1441 atatgaaaaa taaggatcca gaaactttgc ttatagaagc cgtttatttt ttccttggaa
     1501 aaaattggtt actaacaatc cattctaacg aggttaacct taaacaaatt ggggaaagat
     1561 tatttaacat acaaaatgaa accataaagc agagacgtat agatgctcta tattataata
     1621 tcttggctgg acttgttagc aaatatgaac aacttttgac ggcgttagaa ctgtctgtaa
     1681 atgagtatca gagaagatct tttgtacgcc ccttcccagc tatattcgaa agtattgata
     1741 tcctatctag gcaagcaatt atgttgcgca gacaattttg gcatgtgaga aacataatta
     1801 attttctcct gcacatggag aaggacaaag aggatgtgaa atatatagaa atggtttatg
     1861 atgatatttc gcaactgatt gattttgtcg agtcatacga aggtactatt aattctatta
     1921 gagaattata tgttgcaaaa gtatctctcc aaattaatga aacaatgaga atccttacca
     1981 tattcacagt catattactt ccacttgcct taattgcagg aatatatggt atgaatggta
     2041 tagatctaaa aaatatcaca gaaataccac taggcttttt ggttgtattg gtaacaatgg
     2101 ttttcatggt agttggtttt gtcttgtttt tcataaagaa acgctggata ttagtaggga
     2161 gagaaaattc ggagaaagaa tcaaagtcag taaacaaatc tgctgattag taaatgtaga
     2221 ctaaattaaa atcaatacgt gtcatattaa acgtaaaaca tccgacatac tgcaaggtgc
     2281 caaatatatc ttaagaaata agtaagtaat aaaacattaa aaatagaagt ctaaaaccta
     2341 gaaaagtgga tttgtagtcc ttccaacgtc gataattaat ttagaatcca gatttcatcc
     2401 agctaacctt tgttttcgca tctgcaatgt tcttagctgg cctcatttta taatacttgc
     2461 gtcggataga gaatagcaaa ccggttaaga aaacaaaact cgccacgaca atcccataaa
     2521 ttattagtga atcggccatt ctatcagatt aattatacat aaataaaaat ctaggttcca
     2581 ttgtcaacag ggagtttaat ctggcttttt caaatgataa caaatgattt gcaaatttaa
     2641 atttagattt tcaaatattt agtgatttta ctttacagca ttggtttaaa tcttattatg
     2701 agctagaagt accggatgtc ttcaccgtac caagaaaaga cccaggtggt tactaacaga
     2761 aagcagtcag acatcatagc tgatgttata tcaaatgcag agcaaacctt gaatatctgc
     2821 ggtgattctg catcaccaga tttcacactt actggacgaa taagaaaagc tttgcaacaa
     2881 gcaaagctca aaggcataaa aattagatat gtaacagaaa ttacaaagga caatatgagc
     2941 tcatgtaaac aattaatgaa gtttgccgaa gtccgtcact tagacaaggt tgttggaaat
     3001 tttttagtaa gtgataaaga gtattttggc cggtcctccg gaaataattt tctatcaaat
     3061 caagtttata atgacaacca tggcatggtg gagcagcaga attacatctt tgaaatacta
     3121 tggaataacg ctgtcactca acatgataag atttcaagca tagaggtggg agtggatccg
     3181 gacgaagtta aagtcttgtc cgatcctttt gaaattcgta gaacttactt aaatctcatt
     3241 cagtctgcaa actctgaaat atctctgata atagcaactc caaaggctct gcaaagaaac
     3301 tacagaggag gaataatatc aatgttagtt gaggcttcag aaaaaaagaa cgtttctgtc
     3361 aatttggtaa ttcctactta tgagaacgat aaaatacaag atgactttct gcacaccaaa
     3421 tcacttgcta agaattttag atttagaata aaatcaatag ttccaaccac tactcagacc
     3481 cataaaataa agactacgtt tttgataaca gataaaaaat cggttcttat aatagacgtg
     3541 aaagacgata ataaagataa tttcatagaa gctgttggat atgccacttt ccatactagc
     3601 aaatcacgta ccgagtctta taattttatt tttgatacta tttggagaca agctgatttg
     3661 tacgaatcat taagggaggc aaata
//
LOCUS       DASUMD010000016         4595 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_888587, whole genome shotgun sequence.
ACCESSION   DASUMD010000016 DASUMD010000000
VERSION     DASUMD010000016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4595)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4595)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4595
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_888587"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(150..1934)
                     /gene="infB"
                     /locus_tag="VFX26_00280"
     CDS             complement(150..1934)
                     /gene="infB"
                     /locus_tag="VFX26_00280"
                     /inference="COORDINATES: protein motif:HMM:NF003078.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HEX5572939.1"
                     /translation="MELRQPVVVVLGHVDSGKTSLLDKIRGTAVQSREVGGITQHIGA
                     SYFPIETIKEITGKLFDKLSKSENPVPGLLVIDTPGHEVFANLRMRGGSAADIAIVVV
                     DVNKGLEAQTIESLDILKNRKVPFVIALNKIDQLSGWKKNSSILIAEQLKIQDPTILS
                     FLDEKVYTVVGALSRLGYSSEAFWRVKDFTKELAIVPVSAAKGTGIPELLAVLVGLTQ
                     QYMSKRLERHETEAKGIVLEVNDEIGLGPAANIILLDGTLKQGDRIVVGKKDSVTTTK
                     IKALLLPKPLDEMRDPRDKFRHVDKVIAAAGLKITSPDLEGVLAGSPLYVVKNPEDEE
                     KLRSSVESEIRSAIIQTESNGVILRCDTIGSIEAITELLKKENIPIRSADLGNIIRRD
                     ILSASAVREKDRYLGVVLGFNVKVLEDAEKEAFERKIKIFNEKIIYNLVRSYSEWVTY
                     EKVHEDSIIFNEISPVCKFQFLKGYVFRRNNPAVFGAEILIGKLRQKISVMNEKGKKI
                     GVIHQIQDEGKNLEVADKGTQVALSIKGPTVGRQINEGDIFYTDLNSREARILLERFA
                     DRFNEEELQVFNFILSKKREVDPAFGYI"
     gene            complement(1935..2345)
                     /gene="ndk"
                     /locus_tag="VFX26_00285"
     CDS             complement(1935..2345)
                     /gene="ndk"
                     /locus_tag="VFX26_00285"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004550 - nucleoside diphosphate kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HEX5572940.1"
                     /translation="MMSKLEQTLIVVKPDGFKKGLVGKIISRFEEKGLQIVSLKSFQF
                     DENTARKFYEVHKDKHFFNELVSFICSGMTVGCILEGTNAISTVRLMVGNTKSTEALP
                     GTIRGDFGIGFTDNIIHASDSAESFIKESKILFN"
     gene            complement(2351..2560)
                     /locus_tag="VFX26_00290"
     CDS             complement(2351..2560)
                     /locus_tag="VFX26_00290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24e"
                     /protein_id="HEX5572941.1"
                     /translation="MSKAATSLRNCFFCGKHIPTHEGMMLIKNDGSIQWTCSPKCKKN
                     MRLKRDPRKFKWTRKYVKGGIKVKK"
     gene            complement(2570..2785)
                     /locus_tag="VFX26_00295"
     CDS             complement(2570..2785)
                     /locus_tag="VFX26_00295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S28e"
                     /protein_id="HEX5572942.1"
                     /translation="MSKAAEVRVTPAEVIQIVGRTGIAGEVIQVRVKVLEGKDKGRIL
                     TRNVKGSVRMKDILMLRETEREARKIK"
     gene            complement(2794..3174)
                     /gene="rpl7ae"
                     /locus_tag="VFX26_00300"
     CDS             complement(2794..3174)
                     /gene="rpl7ae"
                     /locus_tag="VFX26_00300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7Ae"
                     /protein_id="HEX5572943.1"
                     /translation="MSKPFYVKFETPKDLVNAVYEAVRVAKQSGSVRKGTNETTKAIE
                     RGIGKLVVIAEDVQPPEVVAHLPIICEERNTPYIFVPSKQQLGESLGIEVGSAAATII
                     DAGEGQHIVDQVVGTLSSIKDKKE"
     gene            complement(3258..>4595)
                     /gene="glmM"
                     /locus_tag="VFX26_00305"
     CDS             complement(3258..>4595)
                     /gene="glmM"
                     /locus_tag="VFX26_00305"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008966 - phosphoglucosamine mutase
                     activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HEX5572944.1"
                     /translation="GIRGVFGQDLSLDFLLDITQSLAAYYKEGSILVGRDGRNSNNIM
                     FNIVTAVLNSNGLDTVDAGVLPTPCLQYATKKNQYVGGIMITASHNPPEYNGVKPIAS
                     DGVELSREDELVVEQIFENKSFISSSTLGRNFKEEMIVDDYINDVLKLVNADKIKKRK
                     FNVTMDLGNGVQAIVAPQLAKKLGCTVITVNGTVDGNFPGRGSEPTPSNLSLLSFIAK
                     ETKSDIGAAYDGDGDRSIFCDEQGIVHWGDKTGTLLAKYLISDKHPKAKIVCPVNTTH
                     ILTKIAEDNGSEIIHTKVGSVEVSREMVKKDAIIGMEENGGFMYGLLNQVRDGALTTA
                     LMLDLLASEGKTLSELLSSLPRVYQYKSKFQCAEMGLIQKVMDTLKNHGSPMKIETLD
                     GVKIWFDKESWLMLRPSGTEPLIRIYGESTDELLINSKVNEYTRLVKEALGEK"
BASE COUNT         1263 a         1020 c          719 g         1593 t
ORIGIN      
        1 tcattgtctt tatgaatgga aaacttgttg aaaaagctgt aggcgcagtt ggtgaaaaag
       61 gactagaagg attattggaa aagtaccagt aatagaagta attacaaatt ccaacgcatg
      121 taactagttg tatattaaag aaccttatct tatatatatc caaacgcagg atctacttca
      181 cgtttcttgg acaatatgaa attaaaaact tgcagttctt cttcattaaa cctatccgcg
      241 aatctttcta gcaatattct tgcttccctg ctattaaggt cagtataaaa tatatcgcct
      301 tcgtttatct gtctaccgac agtaggtcct tttatggaga gtgctacctg cgttccttta
      361 tctgcaactt cgagattttt gccttcatct tgtatttgat gtattactcc tattttctta
      421 cctttttcat tcatcacgga aatcttttgt ctcagtttac cgatcaaaat ttcggcacca
      481 aataccgcag ggttatttct tctgaaaaca taacctttca agaactgaaa tttacagact
      541 ggggatattt cattaaatat aattgaatcc tcatgaacct tttcatatgt tacccattct
      601 gagtaacttc ttactaagtt atatattatt ttttcattga aaatttttat ctttctttca
      661 aatgcttcct tctctgcatc ttcaaggacc ttcacattga atcctagcac tactccaagg
      721 taacgatctt tttccctgac cgcagaagca gaaagaatat ctctgcgtat aatattaccc
      781 agatccgctg atctaattgg aatattttct tttttcaata gttcagtaat agcttcaata
      841 gatcctatcg tatcgcatct tagaattacc ccatttgatt ctgtctgtat tattgctgat
      901 cttatctcag attcaacact agatcttagc ttttcttcat cctctggatt tttgacaaca
      961 tagagcggac taccagcaag tacgccttca aggtcgggag aagtgatttt taaccccgca
     1021 gctgcaataa ccttgtcaac atgtctgaat ttatcccttg gatccctcat ctcatcgagc
     1081 ggttttggca acaataaggc cttgattttg gtagtggtaa cactatcttt tttaccaacc
     1141 acaattctat ccccttgttt tagggtaccg tctagaagga taatatttgc tgctggccct
     1201 agtccaattt catcattaac ttccagaaca attccctttg cttcggtttc atgacgttct
     1261 aatctttttg acatatattg ttgagtcaac ccaacaagaa cggctaatag ctctggtatc
     1321 ccagttcctt ttgcagcact taccggaaca atcgcgagtt cctttgtaaa atctttgaca
     1381 cgccaaaatg cctcagaact atatcctaat cgagacagag caccaaccac agtgtagact
     1441 ttttcatcca gaaacgacaa aattgttggg tcttgtattt tcaattgttc tgcaattaga
     1501 atagagctgt tttttttcca gccagataat tggtctatct tattaagtgc gatcacaaag
     1561 ggtacttttc tattttttaa tatatccaaa ctttcaattg tttgggcttc aagtccttta
     1621 tttacgtcta ccaccactat tgcaatatct gcagccgaac cacctctcat gcgaagattt
     1681 gcaaagactt cgtgaccggg agtatcaatt acaagtaaac cgggaacagg attttctgac
     1741 tttgataatt tatcaaataa ttttcctgtt atttctttga tcgtttcaat tgggaaataa
     1801 cttgcaccaa tatgctgcgt tatcccacct acttctctgg attgaactgc tgttccacga
     1861 atcttatcaa gtagggatgt tttaccagaa tctacatgac ccaaaactac aacaactggt
     1921 tggcgaagtt ccacttaatt aaaaaggatt ttagactctt ttatgaagct ttcagccgag
     1981 tcagaagcat gtattatgtt gtcggtaaag ccgatcccaa aatctcctct gatagttcct
     2041 ggcagggctt ctgttgactt agtgtttcca accatcagcc ttacagttga aattgcattt
     2101 gttccttcta atatacaccc aacagtcatg ccagaacaaa tgaatgaaac tagctcatta
     2161 aaaaaatgct tgtccttgtg tacctcataa aactttcttg ctgtgttttc atcaaattga
     2221 aatgatttga gactcactat ctgcaagcct ttctcctcga accttgaaat aatttttcca
     2281 accagcccct ttttaaagcc atcaggcttt acaacaatga gggtttgttc taatttagac
     2341 atcattattc ctatttttta accttaattc cgcccttgac gtactttcgt gtccacttga
     2401 attttctggg atcacgtttt aacctcatgt ttttcttaca ttttggggaa cacgtccatt
     2461 gaatagaccc gtcgtttttt atcaacatca taccttcatg cgtaggtata tgttttccac
     2521 aaaagaaaca attacgaaga gaagtggctg ctttactcat tggataacac tattttatct
     2581 ttctggcctc tctttcagtc tctctcagca tgaggatatc tttcattcta acggagcctt
     2641 taacatttct agtaagaatt cgacctttgt cttttccttc taagaccttt acccttactt
     2701 ggattacttc accagcgatg cctgttctac caactatttg gataacttct gctggggtta
     2761 ctcttacttc tgcagcttta ctcaataata atatcactcc ttcttgtctt taatactaga
     2821 taatgttcca actacctggt cgacaatatg ttgaccttca cctgcatcaa ttattgttgc
     2881 tgcagcagac ccaacttcaa ttcccagtga ttctcctaat tgttgcttac ttggtacaaa
     2941 aatgtacgga gtgttcctct cttcacatat aatagggaga tgtgcgacga cctccggggg
     3001 ttgaacatcc tcagctatta ccactagttt gccaattcct ctttctattg cctttgtggt
     3061 ttcattggtt ccttttctaa cacttccgct ttgtttggct actctaactg cctcgtacac
     3121 tgcattcaca agatcttttg gagtttcaaa ttttacataa aacggtttac tcattttata
     3181 atccatcacc cattgggatc atctttaatc tactgaataa aagtagaggc gtattaaaaa
     3241 tgttcccgag caaaatatta tttttcacct agagcttcct taactagtcg cgtgtattca
     3301 ttaactttgg aattaatgag taattcgtca gtagattctc cataaattct gattaaaggt
     3361 tcagtaccac tggggcgaag catcaaccag ctttctttat caaaccaaat cttcacccca
     3421 tcaagtgttt caatcttcat cggactacca tgatttttca atgtatccat cactttttga
     3481 atcaatccca tttcagcaca ttgaaatttg gacttgtatt ggtaaacccg aggaagagaa
     3541 gagagtagtt ctgagagggt ctttccttct gatgccaaca aatccaacat caatgcggtt
     3601 gtgagtgcgc catctctcac ctgatttaat agtccataca taaaaccccc gttttcctcc
     3661 attcctatga tagcgtcttt cttaaccatt tcccgagaga cctcaacact tccaactttc
     3721 gtatgaataa tctctgaacc attatcttct gcaatttttg tcagaatatg agtggtgttt
     3781 actggacaaa ctattttcgc tttcgggtgt ttatctgaga tcaagtattt ggccaacaag
     3841 gttcctgtct tgtcacccca atgaacgatt ccctgttcat cacaaaatat ggatctatct
     3901 ccatctccat cataggcagc gccaatatca gatttagttt cctttgcaat aaaacttagt
     3961 agactgaggt tcgatggtgt aggctctgat cctcttccag gaaaatttcc atcgacagtt
     4021 ccattaactg ttattacagt acatccaagt tttttggcca gctgtggcgc gactatcgct
     4081 tggactccat ttcctaaatc catagtcaca ttgaactttc gtttcttaat tttgtccgcg
     4141 tttactaatt ttaaaacatc attaatatag tcatcaacta tcatttcttc cttgaaattt
     4201 cgacctaacg tgcttgaact aataaacgat ttattttcaa aaatctgttc gaccactaac
     4261 tcgtcttctc ttgataattc tactccatca ctggctattg gttttacacc attgtattcc
     4321 ggagggttat gtgatgctgt tatcataatg ccgcctacat attgattttt tttagttgca
     4381 tactgaagac aaggtgtggg caaaacacct gcatccaccg tatccagacc atttgaattc
     4441 aggacggcag taacaatgtt aaacatgata ttatttgagt ttcggccatc tcttccgacc
     4501 aaaatggaac cttctttgta ataagctgca agtgactgag taatatccag taagaaatca
     4561 agagaaagat cttgaccaaa aactcctcta attcc
//
LOCUS       DASUMD010000017         3068 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_888698, whole genome shotgun sequence.
ACCESSION   DASUMD010000017 DASUMD010000000
VERSION     DASUMD010000017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3068)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3068)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3068
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_888698"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..472)
                     /locus_tag="VFX26_00310"
     CDS             complement(<1..472)
                     /locus_tag="VFX26_00310"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEX5572945.1"
                     /translation="MKLPSDWKFESSQKIYSNKYIELYEDVLNIRNKRKIYTRAKRKN
                     YSTIVPFVSDNEILVIKSYRHLVNSYQIEAPSGYIENGETSFEAANRELKEETGYGAN
                     NIISLGSYTLDYTMFEQTGNLFVGYDLVNERKQELGMMEIIETTILTIDEIKKLL"
     gene            complement(604..921)
                     /locus_tag="VFX26_00315"
     CDS             complement(604..921)
                     /locus_tag="VFX26_00315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572946.1"
                     /translation="MRSDKRANIWLKNNEGNWRDTTCPCGSNFHFNGDIDELFSWERI
                     HLRHMSSDPENHAMLSLYPTDMVIFYHSASGYIVEIRKHKPHEIKDLQNACLYGNVKL
                     AGV"
     gene            complement(1019..2893)
                     /locus_tag="VFX26_00320"
     CDS             complement(1019..2893)
                     /locus_tag="VFX26_00320"
                     /inference="COORDINATES: protein motif:HMM:NF017442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF790 family protein"
                     /protein_id="HEX5572947.1"
                     /translation="MLPIELLRVRVSSKMNQIRPVFCDYENELSLPSKIIKMYEEMAE
                     KKVSKANVDENVSKIEAKYVDYKLVRGLCHLLEQRCVYASYASSNIAFSDNGNNNNTN
                     NAIYLRRNIFEESSRNGYPVTENERKYILQKVASKNNLTIDELELAMWNDLDKNKYLK
                     NFDSLTSLQLVAWYNISIIQTVLLNCVKLEFSVYGGFNWKKILRKIKQLGLMYFLYSE
                     PNLKLASNNQIKNQDMLLGSNNDKRIICTVDGPLSIVRLTDKYGMAMAKLIPLIIFTE
                     RWSIDATILRKSMNGIKKTYNFQLSNRDKDLPIFDASHITSHTHVQSERDSEIGLSFN
                     KYIMDSFDSNVEKKFMDKFLTFSTDWQLAREPDPLILSDGKAFIPDFVFEKHGVKVYL
                     EIVGFWTKDYLKRKLEKIKDLTTNPVTAEGAADLLIAANMDNYISENGEKIRIDSIFS
                     KFIAKKNLIFYKKDEIPFGPIIKYLKDIDSKIIDDISINFYDTIAREIEKIIQNKQSK
                     VIFLKEISDKHNIPLESVLKTIRNLQSNNNNSKQATTNGIKNFLLVDNYMISNDKINE
                     LLPELDKINKLHDAIWFLCENNIPEECITLLIPKIGFEIVWNGIDSNNALIQRQVIKD
                     "
BASE COUNT          918 a          552 c          423 g         1175 t
ORIGIN      
        1 atagtaactt ttttatttca tcaattgtta gaattgtggt ctctattatc tccatcatcc
       61 ccaattcttg tttcctttca ttaactaaat cataaccgac aaataaattg cctgtttgtt
      121 caaacatagt ataatctaat gtatatgaac ccaagctgat aatattattt gctccatagc
      181 cagtttcttc cttcaattct ctgttggccg cttcgaatga cgtttcacca ttctcaatat
      241 aaccagatgg agcttcaatt tggtaggaat tgaccaaatg tctgtaactc ttaatcacca
      301 gaatttcatt atcagaaaca aacggtacta ttgtggaata attttttctt tttgctcttg
      361 tgtagatctt ccttttattc ctgatgttca atacgtcctc gtataattcg atatatttat
      421 tggagtatat tttctgtgat gattcaaact tccaatcaga tggtagtttc atggttttat
      481 tcattttctt cccgttattt gccttttgta aactgcttta gtaagtttgc taaagcggta
      541 tcttaaattt ttaataattc ctacttaaga tttagaatta aagcttgtac ctaaactcaa
      601 gtgttagact cctgcaagct tgacatttcc atataagcag gcattttgca aatccttaat
      661 ctcatgaggc ttgtgctttc tgatttctac aatatatcca ctcgcggaat gataaaaaat
      721 taccatatca gttggataaa gcgatagcat agcgtgattt tcaggatctg acgacatgtg
      781 tctcagatgt atccgttccc atgaaaataa ctcatcaata tctccattaa agtggaaatt
      841 actaccacat gggcaagttg tatctctcca atttccttcg ttgtttttaa gccatatgtt
      901 tgctcttttg tcggaccgca atacctcaag tgtattgtgt cctcaacata tatactatat
      961 ctatatccat agcaaacttc gatatcaaac tgaagtcatc atttttcaaa tcaatctatt
     1021 agtcctttat tacttgtcgt tgtattaacg cattattaga gtcaatacca ttccaaacaa
     1081 tctcaaatcc aatttttgga ataagcaagg taatacattc ttctggaata ttattttcac
     1141 atagaaacca aattgcatca tgtaatttgt taattttatc aagttctggt aacaattcgt
     1201 taattttatc attagatatc atataattat caactaataa gaaattcttg attccatttg
     1261 ttgtagcctg ttttgaatta ttattgttag attgaaggtt tcttatagtc ttcaagacag
     1321 actcaagcgg aatattatgc ttatctgata tttctttaag aaagataact ttactttgtt
     1381 tgttttgaat tattttttct atctctctag caatcgtatc atagaagtta attgaaatat
     1441 catcaataat tttagagtca atatccttca aatatttaat tattggtcca aatggaattt
     1501 catctttctt ataaaagatt aggttttttt tagctataaa ctttgaaaat attgaatcta
     1561 tccttatctt ttctccattt tcagaaatat agttatccat attcgcagct atcaataagt
     1621 cagcagcacc ctctgcagta accggattcg tagtcaagtc ttttattttc tctaattttc
     1681 gctttaagta gtccttagtc cagaaaccta ctatctctaa atacacttta actccatgtt
     1741 tttcaaatac aaaatctggt atgaatgcct taccatctga tagaatcaat ggatccggct
     1801 ctctggcgag ttgccaatca gtagaaaacg tgagaaattt atccataaat ttcttttcaa
     1861 cgttactatc aaagctatcc atgatatatt tgttaaatga taatccaatt tctgagtcac
     1921 gctctgactg aacatgagta tgtgatgtaa tatgcgatgc atcaaaaatg gggagatcct
     1981 tatctctgtt tgagagttga aagttatagg ttttttttat accattcatg gattttctta
     2041 atattgttgc atcaatggac cacctttcag taaatattat taatggaatt agtttggcca
     2101 ttgccatgcc atacttatct gttaatctta ctatgctaag gggaccatcc acagtacata
     2161 taattctctt atcgttattg ctcccaagta acatatcttg attttttatt tgattatttg
     2221 atgctaattt cagattgggt tcgctgtaca gaaagtacat caatccaagc tgttttattt
     2281 tacgcaaaat tttcttccag ttgaagccac catagacact gaattctagt ttaacgcaat
     2341 taagtaatac ggtctgaata atggaaatgt tataccatgc aactaattgt agtgaagtca
     2401 atgaatcaaa gtttttcagg tatttattct tatcaagatc gttccacatc gcaagttcca
     2461 actcgtcgat tgttagattg ttttttgaag caactttttg gagtatatat tttctctcat
     2521 tttcggttac tggataacca ttgcgagaag attcttcaaa tatgtttctt ctcagatata
     2581 tagcattatt tgtattatta ttgttcccat tatcagaaaa tgcaatatta gatgatgcat
     2641 atgatgcata tacacatctt tgttctaaaa gatgacagag acctctgaca agtttataat
     2701 ctacgtattt agcttctatt tttgagacat tctcatctac atttgccttg gacacctttt
     2761 tctcagccat ttcttcatac atcttgatta tttttgaggg caaagataat tcgttctcat
     2821 agtcacaaaa tacaggtctt atctgattca ttttgcttga tacacgtact ctcaataatt
     2881 caattggcaa catttacaat cattacctca cttggtgata ctgttagatc ttaatcatct
     2941 ctacctaaat aattcttatt ctattatgcc taaaattcaa ttattgatgt aaaatgtaag
     3001 tttaattaga ttcaaattct aagctactga atctgtaata atgacccacc caccctcctt
     3061 tcagtgtc
//
LOCUS       DASUMD010000018         5675 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1110915, whole genome shotgun sequence.
ACCESSION   DASUMD010000018 DASUMD010000000
VERSION     DASUMD010000018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5675)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5675)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5675
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1110915"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..257)
                     /locus_tag="VFX26_00325"
     CDS             complement(<1..257)
                     /locus_tag="VFX26_00325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572948.1"
                     /translation="MRKNITVAFLMLITLGSISYTVWTHFSNIVYAQDGTKNNISSLY
                     ELANSGILAKILSGNLVNYLNESASILEITSMIPEVSNAQYA"
     gene            complement(417..1181)
                     /locus_tag="VFX26_00330"
     CDS             complement(417..1181)
                     /locus_tag="VFX26_00330"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HEX5572949.1"
                     /translation="MQKTIDVVVTSPPYNIGVRYNRYKDTLPRNDYLRFLSDVGGAIK
                     KVLSDDGSFFINIGSKPSDPWIPLDAANVLRKYFTLQNVIVWIKSIAIPKSDVGKYPS
                     VISDIAVGHFKPLVSDKYLNDCSEFIFHFTKNGNVKLDKLSIGVPYQDKTNIGRWKRA
                     TRDLRDRGNTWFIPYETIWDKEQRPHPSTFPSKLPEMCIKLHGVSRCRIVLDPFVGIG
                     STAIASIRSGVSCIGFDIDKTYLETSKQRILSYQSS"
     gene            complement(1355..1771)
                     /locus_tag="VFX26_00335"
     CDS             complement(1355..1771)
                     /locus_tag="VFX26_00335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572950.1"
                     /translation="MDSKSAIFVAVSSLLVMAIYSPIMNFVSAEVTTECFGRSADTYY
                     CVITWTGPGGRVETWVMECTPDACNVLGPKAKPPGIDQLIQNAINEETQTNTNDPKFP
                     RGDILPDEDEPTINDPQTTTEPNIKEPGKIEMPNLK"
     gene            2052..2534
                     /locus_tag="VFX26_00340"
     CDS             2052..2534
                     /locus_tag="VFX26_00340"
                     /inference="COORDINATES: protein motif:HMM:NF012573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005509 - calcium ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HEX5572951.1"
                     /translation="MIEFSIQRTTLLAIGTVSVIMLFSSLFPTTSNYSERLVFAETIS
                     CDSAINPCVGTSEDDRMNGDNGINIMRGGAGNDVMNGKGINDDIFGEEGNDKIDGGPG
                     HDEIDAGSGNDEIIGGSGPDFLEGREGADSFNCGSGEDGVDDFHPEEGDTKTKDCEFF
                     "
     gene            complement(2624..2995)
                     /locus_tag="VFX26_00345"
     CDS             complement(2624..2995)
                     /locus_tag="VFX26_00345"
                     /inference="COORDINATES: protein motif:HMM:NF012753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030234 - enzyme regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006808 - regulation of nitrogen
                     utilization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HEX5572952.1"
                     /translation="MGKDNTTLPFEVTYAEMPGKESRTMKRLAVLVKAENVSDILTSL
                     KELNLEATIYDVKGVTKDKETVASGRGSGTVELAYNSRKVIATVVNSSDVKEVVSRMK
                     KSLAGNKAVVMISAVDDLVLI"
     gene            3159..3617
                     /locus_tag="VFX26_00350"
     CDS             3159..3617
                     /locus_tag="VFX26_00350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572953.1"
                     /translation="MESNHFIKTMIVTSFIFTIVLVNANLLAKATAETGVGKDVFKVI
                     VTLFGITNSTKDITTIVNVKDQTKVKVFNAENPESEVEDKVSYTMTFPNLTVDDGDPY
                     SVCTVSVEDFELNCVEGNNSPLNRPEFVDIDVSGGGSSEGDQEEGSNEED"
     gene            3706..4086
                     /locus_tag="VFX26_00355"
     CDS             3706..4086
                     /locus_tag="VFX26_00355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572954.1"
                     /translation="MNMNRTMKSLVYGAGASTLIAGVLHLALVPMFFNQMTPDVIIFF
                     IGSGLAQLFWIIPTVKRWIFPWYYIGIGGTIILIIMWIIAIPGSGYPIGVMDVAIEVS
                     QIAFVILSVIVIKKNREELNKYSM"
     gene            complement(4235..4615)
                     /locus_tag="VFX26_00360"
     CDS             complement(4235..4615)
                     /locus_tag="VFX26_00360"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX5572955.1"
                     /translation="MIFKNTKAFSSFSVNDLEEAKKFYGQTLGLEVSESEEGLNLQIK
                     GGNDVFIYPKPDHVPATFTVLNFVVDDVDRTVDELSKLGIRFQIYNNGELKTDDKGIF
                     QGKPKIAWFKDPAGNFLSILENDS"
     gene            complement(5150..>5675)
                     /locus_tag="VFX26_00365"
     CDS             complement(5150..>5675)
                     /locus_tag="VFX26_00365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX5572956.1"
                     /translation="GIIRKIDKISFLPRSENKIKKKRSKMINNRVMITGAIPRVTDFE
                     KGFPLQYKEEKNECDLVPDPLVNDDQALIMNVRKKGLIILTGCGHAGIINTIKFAKKV
                     TGVRKIYCVIGGFHLSGHGYEESIPLTISELKREDPQYVVPCHCTGWKAANEIINKMP
                     GKFIQPSVGSTFCF"
BASE COUNT         1752 a          970 c         1040 g         1913 t
ORIGIN      
        1 gcatattgtg cgttgctaac ttctggtatc atactagtta tttccaaaat cgaggccgac
       61 tcatttagat aattaactaa attaccagac aaaattttcg ctaatatgcc actatttgcc
      121 agttcataaa gagaggagat gttattttta gtaccgtcct gtgcatatac aatattcgaa
      181 aagtgagtcc aaaccgtgta gctgatagac ccaagagtta ttagcataag gaaagccacg
      241 gtgatgtttt tccgcatacc ctacagagtg tgtgataaca tgtatttaat tattaagttt
      301 gaataattaa cagcatttat ggtaataacc aaattcatta ttgtcttttt ggttagcaac
      361 ggtctacgga agttttcgat tactctgatt cacaataact tctggaggga cgaacattaa
      421 ctggattggt agctcagtat cctttgttta cttgtttcta gataggtctt gtctatatca
      481 aaacctatac atgaaacccc tgatcttatt gatgctattg cagttgaacc tattcccacg
      541 aatgggtcca gcactattct acacctacta actccatgta atttgatgca catttctgga
      601 agcttacttg gaaaagtgga aggatgtggt ctctgttctt tatcccaaat ggtctcatat
      661 ggtataaacc aagtgttacc acgatctctc agatcgcggg ttgccctttt ccaacgtcca
      721 atatttgttt tatcttggta gggaacccca atggaaagtt tatctaactt gacattaccg
      781 tttttagtaa aatgaaagat gaattcagaa caatcattta gatatttatc actaacaagt
      841 ggtttaaaat gaccaacggc tatgtctgat attacagatg gatattttcc aacatcagat
      901 tttggaatgg ctatggactt tatccatacg atgacgtttt gtaatgtgaa atactttctc
      961 aaaacattag cagcatctaa aggtatccaa ggatcagacg gcttgctgcc aatatttata
     1021 aaaaaagaac catcatctga cagaactttt ttaattgctc cacccacatc cgataggaat
     1081 ctcaagtaat catttctcgg cagtgtatcc ttgtagcgat tatacctgac accaatatta
     1141 tatggaggag atgtgacaac tacatcaatt gttttctgca ataaatgatt ttcaattcca
     1201 ctgatacagt caccatggta taactttatg aagatacctt tcctctttaa ttcaagaaat
     1261 tttaccggga tatcttgctt aattttgatt caacttcttt tcagagattc ggaggcaaaa
     1321 gtcaaattaa tttgtattaa tcttatagaa actgctattt tagattaggc atttcgattt
     1381 ttccgggttc cttaatattt ggttcagtag ttgtttgtgg atcatttata gtgggctcgt
     1441 cctcgtcagg aagaatatct ccgcgtggaa attttggatc gttagtattt gtttgcgtct
     1501 cttcgttaat agcattctgt attaactgat cgattccggg aggctttgct tttggaccta
     1561 atacattaca agcatccgga gtacattcca tgacccaagt ctctacacga ccacctggac
     1621 cggtccatgt gataacacaa tagtatgtat ccgcactcct tccaaagcat tcagttgtca
     1681 cttctgctga tacaaaattc ataattggac tatagattgc cataacaagt aaggagctca
     1741 cagcgacaaa gatcgcggac tttgaatcca tgcaggttct aaaagaagga tcgtatttaa
     1801 gactatgtga aacacgagtg tttattcggc taaatttgaa agtaagcaag ttattgataa
     1861 attaaattaa attaaagtaa aatggtgatg gcgataagtt tgtcgaatgg tattgtgata
     1921 agtgttttaa aagatgggta gacaaagagt tagagcagat ataaaacaga attgcgtgaa
     1981 tgaatctccc gtaagatttg aagtaatcaa aataactctt aaataataga ataaatactc
     2041 atgattgcat aatgatcgaa tttagtatac aaagaacaac tttactcgct ataggaactg
     2101 tatctgttat catgctgttc tcatcgcttt ttcctacaac atcaaattat tctgagagat
     2161 tagtatttgc agagacaata tcatgtgatt ctgcaatcaa tccatgtgta ggaacctccg
     2221 aggatgatcg tatgaacggt gataatggta ttaatattat gaggggagga gccgggaatg
     2281 atgtcatgaa tggtaaaggt atcaacgatg atatttttgg tgaagaaggt aatgataaaa
     2341 tagatggtgg tcctggtcat gacgaaatag acgcagggtc tggcaacgat gaaataattg
     2401 gtggttcagg tcctgatttc cttgaaggac gtgaaggagc ggactctttt aattgcggtt
     2461 ctggagaaga tggcgttgat gactttcatc cggaagaagg ggatacaaaa actaaagatt
     2521 gtgaattctt ctagaatcaa ttaagcaact taccaatcca ataattgctt catatatatg
     2581 aaagaaggta gaagtaagaa agaatcaata atttaagatg ttctcagatc aatacaagat
     2641 catctactgc ggatatcata acaacagctt tatttcctgc tagacttttc ttcattctgc
     2701 ttaccacttc tttgacatca gaagaattta caacagtagc tataactttt ctagaattgt
     2761 atgcgagttc aactgtacca cttcctctac ctgatgcgac tgtttcttta tctttggtta
     2821 cgccctttac gtcataaatt gtggcttcaa gattcaattc ctttaatgaa gtgaggatat
     2881 cactaacatt ttccgctttt acgagtacag ccagtctctt catagttctc gattcttttc
     2941 cgggcatttc tgcgtatgtt acctcaaatg gcaaggtcgt attgtcttta cccatttctt
     3001 tagagtagaa atgcgaagta taaaaagttg atgtaaatat gaaattggga tcaagtgttg
     3061 cggtagacaa atgatacttt ttttgatata attttcttta ttaagatacg aaattattgt
     3121 tgtaaatatt tatttatgtt gttgatacta ctacttttat ggaaagtaac cattttataa
     3181 aaacaatgat tgtaacaagt ttcattttca caatagtgtt ggtaaacgcc aatttattgg
     3241 ctaaagcaac tgcagaaact ggagttggaa aagatgtatt taaagtgatt gtcacgttat
     3301 ttggcataac aaattcaaca aaagacatta cgacaattgt taacgtgaag gatcaaacta
     3361 aggtaaaggt gttcaacgcc gaaaatcccg aaagcgaagt agaggataaa gttagttaca
     3421 caatgacctt tcctaatttg acagtagacg atggggatcc gtacagtgta tgtacagtga
     3481 gcgttgaaga ttttgagctt aactgtgtag aaggaaacaa ttctcccttg aatagaccag
     3541 aatttgttga tatagacgta tcgggaggag gcagtagcga aggagatcaa gaggaaggtt
     3601 ctaatgaaga agattgaatg cttccttcaa tgaacagaaa tacgcataga caagatcagt
     3661 ttttcattta tatcgatata gcaatttgtg ggattaacaa ctttaatgaa tatgaataga
     3721 acaatgaaat cgctagttta tggtgctggc gcatctactc ttatagcagg agtattacat
     3781 cttgctcttg ttccaatgtt cttcaatcaa atgacgccag atgtaataat attctttata
     3841 ggttctggtc ttgctcagct cttctggatt atacctaccg tcaagagatg gatattcccc
     3901 tggtattata tcggtatagg tggaacgatt atcttgatca taatgtggat aattgcaata
     3961 cctggaagcg gatatccgat aggtgtgatg gatgtggcta tcgaagtctc acagatcgct
     4021 ttcgtaattt tgagcgtaat agtaatcaag aaaaatagag aagaattgaa taagtatagt
     4081 atgtagactg tagactatga catctttacc ctatactaaa acattcctcc tatgttacta
     4141 caaaatgaac tcgaagtata cttgctatgg taacattata caacatcatg cgtataatta
     4201 atgtttacca taactgggta tttgaaccta agtcctaaga atcattttca agtatggaca
     4261 agaaatttcc ggcaggatct ttaaaccatg ctatctttgg tttaccttgg aaaatacctt
     4321 tgtcatcagt ttttagctca ccattgttgt agatttgaaa acgaattcct aatttactga
     4381 gttcgtctac tgttcgatca acgtcatcaa ctacaaaatt aagtacggta aaagtcgcag
     4441 gaacgtgatc gggtttggga taaatgaata catcgttacc tcctttaatt tgtaagttta
     4501 gcccttcctc cgactctgat acctcaagtc ccaaagtttg tccgtaaaac ttcttggctt
     4561 cttctaaatc attaacggaa aaactagaaa aagcttttgt gtttttgaaa atcatatacc
     4621 aacattagag taaaataact ataaagagtt atactatttg cctcaatttg accagttttg
     4681 agttaggcga gtatcattgg actaaccgat ggttttggct cgacaacttt cgtagttagt
     4741 gctggagtaa catttgcaat atctatatta tcgtttagaa cttctaagaa tgaaatagtg
     4801 tacgctttta gttgtttaca ttttatggaa ttaaatttct agctagtaga tattctttag
     4861 tcctgaagat tgcttactaa gattgtctgt ggatttgatc tttgcaaatc gtaacacttt
     4921 ggacagatca tgcttccgaa ccagtatttg atcgagctcg ttttcttttc acataattca
     4981 catcttgcaa agttaaacat ttctttagta tgttagatat catcttatat aaaacttttc
     5041 tagtagattt agatggatgg aactcggaat tccgggttga aattttattt taggatatga
     5101 ttggcttcta ataccgtttt atgtctttaa tgaccattga agtttgtgtt caaaaacaga
     5161 aagttgaacc cacactaggc tggatgaatt ttcctggcat tttgtttata atttcatttg
     5221 ctgctttcca acccgtacag tgacatggaa caacatattg tggatcttcc cttttcagct
     5281 cagatattgt caaaggaatg gattcttcat atccatgacc tgataaatga aatccaccga
     5341 taacacaata tatctttctc acaccagtaa ctttttttgc aaatttaatt gtgtttatta
     5401 tcccagcatg tccacagcca gtcagaatta tcagtccctt ttttcttacg ttcatgatta
     5461 aagcctgatc atcatttacc aacggatcag gtactaagtc acattcattt ttttcttcct
     5521 tatattgtaa tggaaatcct ttctcaaaat cagtaactct tggtatagct ccagttatca
     5581 tgactctgtt atttatcatc ttgcttcttt tctttttgat tttgttttca ctccttggga
     5641 ggaaacttat cttgtctatt tttcttataa ttcca
//
LOCUS       DASUMD010000019         2516 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1221475, whole genome shotgun sequence.
ACCESSION   DASUMD010000019 DASUMD010000000
VERSION     DASUMD010000019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2516
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1221475"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..403
                     /locus_tag="VFX26_00370"
     CDS             <1..403
                     /locus_tag="VFX26_00370"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: protein motif:HMM:NF024848.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ribonuclease HI family protein"
                     /protein_id="HEX5572957.1"
                     /translation="EIYIDGSSRGNPGLSGIGIIGINESKRVFSYREFIGIKTNNQAE
                     YFALKRALQISSFQTKNVRIKSDSILLVNQRSKKYKIRNMELKNMSMEIANLEKLFDI
                     VEYRHIMRPENYDADLQANSAIDDYVKYQKK"
     gene            541..1059
                     /locus_tag="VFX26_00375"
     CDS             541..1059
                     /locus_tag="VFX26_00375"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: protein motif:HMM:TIGR02228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEX5572958.1"
                     /translation="MLDEKSRLPTLIKNVIVFVLGVLIIVSLYHYLETEFDNPLPFFV
                     IYSDTMTPSLKINDLIIVGDGHMFNNTNVGDIIVFNKPAGEDRIIVHRITEITSENGR
                     RVIITKGDASPVSIPGVDFPVNSHNFIGRIKFVIPQIGFLFIPPLNYVLLGVIISTVA
                     FVIFIYERKRSK"
     gene            1251..2297
                     /locus_tag="VFX26_00380"
     CDS             1251..2297
                     /locus_tag="VFX26_00380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HEX5572959.1"
                     /translation="MNKATEFHIGILKAKIAKLRREQDENRHGKNVSSGKENEGFNVR
                     KSGDASVVLVGLPSVGKSTLLNALTNANSRTGSYQFTTLTAVPGMMEYNGSKIQILDL
                     PGIVEGASKGKGLGRKVLSVARNADLVLMVLDVFQPELLEILVNELHEVGIRINKKFP
                     EVFIEKAHYGGLSIHNQFSNIPSHLVKEVLRINGISNGRVLIKEPNLTVEQLIDVVTG
                     NRIYLPALVVLNKIDLVDGKFISQIEKKVQNFIPISADRKMNIDRLKRSIYEKLAFIR
                     IYLKPRGDKIDEEPLIMNQKCTIRDVCLKIHRNFVKDFKHAYVWGSSVKFSSQKVGLD
                     HILNDKDVLRIILK"
BASE COUNT          905 a          389 c          487 g          735 t
ORIGIN      
        1 tgaaatctat atcgacggtt caagcagagg aaatccgggt ctttcgggaa taggaataat
       61 tggaatcaac gaaagcaaaa gagtatttag ttatagagaa tttattggaa taaagacaaa
      121 taatcaagct gaatattttg ccctaaaaag agcactgcag attagcagtt ttcaaaccaa
      181 aaatgttaga atcaaatcag atagcatttt gttggttaat cagcgatcaa aaaaatacaa
      241 gatcagaaat atggaattaa aaaacatgtc aatggagata gcaaatcttg agaaattgtt
      301 tgacatagtc gaatacagac atattatgag acctgaaaat tatgatgcag atcttcaagc
      361 aaattcagct atagacgatt atgttaaata tcaaaaaaag taaagtagat agtggcagcg
      421 gtgaagattc agagttattc taagaatcat ctaatatgat gaaaaggcat tagactgagc
      481 tgccaattta ctataaaaat ctaaagattt atctaatcta cataaataat ttttgatgaa
      541 ttgctagatg aaaaatcacg gcttcctacg ctaataaaaa atgttatagt ttttgttcta
      601 ggagttctaa taatcgtttc actttaccat tatctcgaaa ctgaatttga caatccgttg
      661 ccatttttcg ttatatatag tgacacaatg actccgtccc taaagattaa tgatctgata
      721 attgttggtg acggacatat gttcaataac accaatgtag gagacatcat agtcttcaat
      781 aaacccgctg gcgaagatag gataatagta catcgtataa ctgaaataac ctcagaaaat
      841 gggagaaggg tgataataac aaaaggggat gcaagtccag tatcaatacc aggggttgat
      901 ttccctgtga acagccacaa ttttattggc agaattaaat tcgttatccc acagattggt
      961 tttctattca ttcctccatt gaattatgta ctgcttggag taataatttc aactgtagca
     1021 tttgttatat ttatttatga aagaaaaagg agcaagtagc aatagaaatt tttgggtttc
     1081 tcagatgtag gtaagaaact tgttaatatt gggttccttc agatataacg ctataatgaa
     1141 tcatgagcaa agatatttat cgaatgaaag aaaaattaac gtagggggtt ttatccctgg
     1201 gaattcctga aaaaattaaa gctatacaag aagaaattca taggactcaa ataaataagg
     1261 caactgaatt tcatattgga attctcaagg caaaaatagc aaaactcagg cgcgagcaag
     1321 atgaaaacag gcacggcaaa aatgtttctt ctggaaagga aaatgaaggg ttcaacgtta
     1381 gaaaatctgg agacgcatca gtagtacttg tgggattacc tagtgtaggt aaatcgactt
     1441 tgcttaatgc tttaacaaac gcgaactccc gtaccggctc ttatcagttt actacactaa
     1501 ctgcggttcc gggtatgatg gaatataatg gttccaaaat tcagatactt gatcttcctg
     1561 gaatagtaga gggtgcgtct aagggtaaag gcctaggaag aaaagtacta tcagttgcaa
     1621 gaaatgcaga tctagttctc atggtattgg atgtttttca accagaactt ttagagatat
     1681 tggttaatga gcttcacgaa gtgggtataa gaattaacaa gaaatttcca gaagtattca
     1741 tcgaaaaagc acattatgga ggactctcga ttcataatca gttttctaat attccaagtc
     1801 atttagtgaa ggaagttcta aggataaatg gtattagtaa tggccgcgta ttaatcaagg
     1861 aaccaaacct gacggtagaa cagttgatag atgttgttac tgggaatagg atttacctac
     1921 ctgcacttgt agtattaaat aaaatcgatc tcgttgatgg taaattcatt tcacagatag
     1981 aaaaaaaggt acaaaatttt attcccatct ctgctgatcg caaaatgaac attgaccgtt
     2041 tgaagagatc aatttatgaa aaactagcgt tcattagaat ttatctcaag cctagaggcg
     2101 acaaaattga tgaggaacca ctaatcatga atcaaaaatg tacaattcgt gatgtatgtc
     2161 taaaaataca caggaatttt gtaaaggact tcaaacatgc ttatgtttgg ggcagcagcg
     2221 tcaaatttag ttctcagaag gtaggattag atcacatact aaatgacaag gacgttctga
     2281 gaatcattct aaagtaagag tttctaaaaa agttcttcaa atttggaaaa cttaaaatct
     2341 atgcctttga ggtatgtata agggactctt gaaatatcca aaggttgttc ttaccgcaga
     2401 tcgcactctt atgtcaccgt atagaggcat ttcgttagca tcatttttcg gctgcgcgcc
     2461 agctattgat ccaaacaggt cacacgacac gttactctac aaaattcttc gcaatc
//
LOCUS       DASUMD010000020         2242 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_558375, whole genome shotgun sequence.
ACCESSION   DASUMD010000020 DASUMD010000000
VERSION     DASUMD010000020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2242)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2242)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2242
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_558375"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..110)
                     /locus_tag="VFX26_00385"
     CDS             complement(<1..110)
                     /locus_tag="VFX26_00385"
                     /inference="COORDINATES: protein motif:HMM:NF014713.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcdA"
                     /protein_id="HEX5572960.1"
                     /translation="MVDVGILISALAGAGSFFSPCILPILPAFISYLSGTT"
     gene            complement(261..884)
                     /locus_tag="VFX26_00390"
     CDS             complement(261..884)
                     /locus_tag="VFX26_00390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572961.1"
                     /translation="MKQNKKKDNNIKKDKPLNPKKERDDRSYFAVTRKRRNRNLMIIV
                     PAVIVLFGIMAYAVTVYSGNLDRPSQNFGPLGSEHVHAAFAVKINGEKLDFSQEKYQV
                     KSQYIHVENNDGNTLHRHATGVPVGEFFASLGMNVTDSCFTLENKTSYCSNGNSNLEF
                     YVNGNKTNSIANYVLKEDDRILIVYGNKNAIETQQDLDALRLTEIKK"
     gene            complement(998..>2242)
                     /locus_tag="VFX26_00395"
     CDS             complement(998..>2242)
                     /locus_tag="VFX26_00395"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEX5572962.1"
                     /translation="IELFDMKGGNFKSLFVNPVLLYETPDEKSLEETLMQIASYLSDI
                     RADESQDQHSSAMENNDNIVYFAMDSLNHFCDIFELSSIKKFLARLILQLKKRKTIGI
                     FTIDSPISTEYQPIVSFCDGIMEMKFEESNDSLIRKIRLLSMAGHAMTKPTWIQFSID
                     KYGRFTFAGDLLKCTLDGRVIQHSPVYYLDLPFHSEGCARTYRKFMSVFKDLDPKYEV
                     LNYNFCFIDIVGLSNPELAVHRQKEKIVRLNEFISSCNSFRKISDDLKIILPAGDGMA
                     IGYENNPELPYKLSVELHGFLRKYNKRMAHDNQIKVRIGLSSGPVFTVYDISNRLNVW
                     GPGIIMARRVMDLGDSWHILITENFAMQLKPLYEEYKNNIRFIGSYEIKHGEKLNVYS
                     AYSDDYGNPELPEKFKQIYTRP"
BASE COUNT          690 a          424 c          366 g          762 t
ORIGIN      
        1 gtagtgcccg atagatacga aataaaggca ggtaaaattg gtaatataca tggcgaaaaa
       61 aaagatcctg caccggcgag tgcagaaata agtatgccaa catcgaccat ataaataaat
      121 agtgactcta ttttggatta atacttttgt ccatattggc accagattta ttacaaattc
      181 aaaatcaaaa tattatttat cgttttacaa ttcatacgac cccaataaaa aaaattggag
      241 atagaaaatt ttgatgatga ttatttcttt atctcggtaa gtcttagtgc atccaagtct
      301 tgttgtgttt ctattgcatt cttatttcca taaacgatca atattctgtc atcttctttg
      361 aggacatagt ttgcaattga gtttgtttta ttaccattaa cataaaattc tagatttgaa
      421 tttccgttac tgcaataact tgttttattt tcaagagtaa aacagctgtc cgtgacattc
      481 atacctaggc tagcaaagaa ttccccaact ggaacgccag ttgcatgtct atgtaatgta
      541 ttgccatcat tattctcaac atggatatat tgggatttca cctggtattt ttcttgacta
      601 aaatctaatt tttcgccatt aatctttacc gcaaatgctg catgaacatg ttcagaacca
      661 agagggccaa aattttgact tggtctatcc aaattgccag aatatacagt taccgcataa
      721 gccataatcc caaaaagcac tatcacggca ggcacaatta tcatcagatt cctatttctc
      781 cgcttgcgag ttacagcaaa gtagctccta tcatccctct cttttttcgg attgagaggc
      841 ttgtccttct ttatgttatt gtccttcttt ttattctgct tcattatcaa ccaacaactg
      901 acgatttatt cataaaaact ttgagggata atttaaagaa atctttatca gaattcctag
      961 aaagttcgga atgggtgaaa gctgcaagtc aagtcaatta tggcctcgtg tagatttgct
     1021 tgaatttttc tggcaattcc gggttcccat agtcatcaga atatgcagaa tagacgttta
     1081 acttctcacc atgtttgatt tcatacgatc caatgaatct gatattattt ttgtattctt
     1141 cgtaaagcgg ttttagttgc atagcaaagt tctcggtaat tagaatgtgc caactgtcac
     1201 ccaggtccat gacccttctg gccattatta ttccaggacc ccaaacgtta agtctatttg
     1261 atatatcata aacagtgaac actggtccag aacttagtcc aattctgact ttgatctggt
     1321 tatcatgagc cattcgtttg ttatatttgc gtagaaatcc atgtaattcg acactaagtt
     1381 tgtatggcaa ttcaggattg ttctcgtaac ctatagccat accatctccg gcaggaagaa
     1441 ttatcttcag gtcgtcagaa atcttcctaa atgaattaca agaactgata aattcgttta
     1501 gccttactat cttttccttc tgtctatgga ctgccagctc cggattggat aatcctacga
     1561 tatcaataaa gcaaaaatta taattcaaaa cttcatattt tgggtctaga tccttaaaaa
     1621 cagacataaa ttttctatat gttcttgcgc atccttctga atggaatggt agatcaaggt
     1681 aataaactgg agaatgttga atgactctcc catctagtgt acatttaagt agatcgcctg
     1741 caaatgtgaa ccttccatat ttatcgatac taaattgtat ccaagttggt tttgtcattg
     1801 catgacctgc cattgaaagt aatcggatct ttctaattag agagtcgttt gattcttcaa
     1861 atttcatttc cattattcca tcacaaaaag agacaatggg ttgatactct gttgatattg
     1921 gtgaatcaat agtaaagatt ccaatagttt ttcttttctt taactggaga atcaatcgtg
     1981 ccaaaaactt cttgattgaa cttagttcaa atatgtcaca aaaatgattt aacgaatcca
     2041 tggcaaaata aacaatgttg tcattgtttt ccatcgcgct actatgttga tcctgtgatt
     2101 catcagctcg aatatcggaa agatatgaag ctatttgcat caacgtctct tctagagatt
     2161 tttcatcggg agtctcgtat aagagaaccg gattgacaaa taacgatttg aaattcccac
     2221 ccttcatatc gaataattca at
//
LOCUS       DASUMD010000021         8282 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1000975, whole genome shotgun sequence.
ACCESSION   DASUMD010000021 DASUMD010000000
VERSION     DASUMD010000021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 8282)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8282)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8282
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1000975"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1664
                     /gene="acs"
                     /locus_tag="VFX26_00400"
     CDS             <1..1664
                     /gene="acs"
                     /locus_tag="VFX26_00400"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003987 - acetate-CoA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0019427 - acetyl-CoA biosynthetic process
                     from acetate [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HEX5572963.1"
                     /translation="SESGDVRTLTYNQLYVEVNKFANALRNLGIRKGDRVTIYLPMVP
                     ELLIAMLACSRIGATHIVVFSGFSSQALTDRINDSKSKVIITADQGIRRGKILELKKI
                     VDSAIASTPSIENVIVLKRAIAEIEMNEKDLLWHELVKKEKSYCKPEIVESTHPLYIL
                     YTSGTTGKPKGVLHSTGGYLTHIYATAKWVFDYKNEDIFFCTADIGWVTGHSYMVYAP
                     LLHGVTSVIYEGTPDFPTPDRYWALIEKHRATILYTTPTALRIYMKYDLSIPSSFDLS
                     SLRLLGTVGEAINPEVWLWYFRVIGKEKCPIVDTWWQTETGGIMISQCLGIDAIPMKP
                     GSGTFPVPGVDIGIVDEKGMDVNPNNKGYLVIKRPWPGMLMTLWNNDDKYIKTYWNKF
                     QGFYYSGDFALLDQDNYIWLLGRSDDVLKIAGHRLGTMELESAFVSFNAIAEAAVISK
                     PDEEKGEAIVAFLVLKAGYKESPEMRTDLVNHIRKTVGPIATPNEIYFTNKLPKTRSG
                     KIMRRLLKSISTNSEIIGDTSTLEDEASVEEIKQVYRDFQDNTKR"
     gene            complement(1695..2186)
                     /locus_tag="VFX26_00405"
     CDS             complement(1695..2186)
                     /locus_tag="VFX26_00405"
                     /inference="COORDINATES: protein motif:HMM:NF014678.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF192 domain-containing protein"
                     /protein_id="HEX5572964.1"
                     /translation="MVRKITVLVPVIIGCVILGVLGLTFVPEGIKNRNIDFSKGTIVI
                     NNHSISTEIAETPAERQRWLTFRSEELPLNSTLLLVYDKSDLYSVWLLNIQFNLDLIW
                     LDGAGNIVYMKQDALPCKNTLDAAQCTYKNTKPARYILAATAGFINYHNITKDSKIKL
                     VSV"
     gene            2336..2629
                     /locus_tag="VFX26_00410"
     CDS             2336..2629
                     /locus_tag="VFX26_00410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEX5572965.1"
                     /translation="MPVAIIPDISEQHCIGCALCVEICTALGPDVLRVKPVEGWKRGK
                     AFVFYPERCISDGACIGVCPTKAIFWMRPMDYTPGQPIPLKKNGLFAKGWEEG"
     gene            complement(2751..3020)
                     /locus_tag="VFX26_00415"
     CDS             complement(2751..3020)
                     /locus_tag="VFX26_00415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572966.1"
                     /translation="MNVSTVISVLNVGVLLTLLLIYTKIYIKSRAVFTIGLMFFTVML
                     MLHNLIAVYAYLVMAPLYPNDLLPYFVAIHIAELVGIVSLLRVTL"
     gene            3170..4198
                     /gene="fen"
                     /locus_tag="VFX26_00420"
     CDS             3170..4198
                     /gene="fen"
                     /locus_tag="VFX26_00420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flap endonuclease-1"
                     /protein_id="HEX5572967.1"
                     /translation="MGLDLKPILTHTNLKLSDLSNKIIAVDAFNTIHQFLATIRGSTG
                     ELLANFHGEITSHLSGLFYRNINLLAEGIKLVYVFDGVSSPLKTNEIQRRHQIKEIAT
                     EKYEKALVQGKLEEARKYSQATSVLTNNMIEESKRLLSLLGIPTIQAPSEGEATAANL
                     TNTDLVQICASQDYDSILFGARRLVRNITISGKRKVPNRNAYIDVPLEIFHLEDILNQ
                     TKLTNEQLVDVGILIGTDYNIGGIPGIGPKTALKLIQKYSKLENIDQLQEPLSNVPYE
                     EIRELFLKPKIANVTSNDIKFEPVDYDKLVEFLCTEKNFSSDRVNSALQKVQNSDKNK
                     NQSLEKWF"
     gene            complement(4242..5891)
                     /locus_tag="VFX26_00425"
     CDS             complement(4242..5891)
                     /locus_tag="VFX26_00425"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050797 - thymidylate synthase (FAD)
                     activity [Evidence IEA];
                     GO_process: GO:0006231 - dTMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HEX5572968.1"
                     /translation="MNFNTEYDFSDKEKSILDQHFSNSDKHVFAITTPRQVDRGALMS
                     RYSRSDKTMRKIFLDEFVANPNRGQEFYSKILSEYGDDSVAELGEAQIAVEWISNIAA
                     KKIEDQRIGLSYLEKSSRYIPFDKKVGNMYKYYRDERILKSKYADLYIESCDHSFNVY
                     SKSIRVMQRFISEMEPIDDFMYFDSISKSEKPFSKLRNDQDIESAKKVYHSTVRSQTL
                     DILRNLLPASTLTNLGITGNGRAFEYLLTRLYCSELNELKDLAHLLNSELDCVIPSFI
                     KRVNEKHGKSLQSFMINTNKEISKLTDKYLEDIKPDFSPVDVRLIDYMDSKDAELKVI
                     SAILYENAKGQSLHDITKLVKSFPQARRNEIILAYTKFRGNRRQRPGRAFEMVEYMFE
                     MFTNFGMFRDLHRHRILTMERQLLSTKHGYDIPKEIIDSGIEKDFKDCMYLSSNTYQN
                     IVKTMPVEAQYAVNFAYKYPYFMKINLRELYHVIELRTTAQGHPDYRYICQQMFKKIN
                     DIHPLLMKGMKFVDLNQYGLGRFDTEKRKEMKRRELLSSKS"
     gene            6037..6828
                     /locus_tag="VFX26_00430"
     CDS             6037..6828
                     /locus_tag="VFX26_00430"
                     /inference="COORDINATES: protein motif:HMM:NF037920.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CdvA-like protein"
                     /protein_id="HEX5572969.1"
                     /translation="MSDIKLEFVGKQVKDMYGAYVGKVIGLVTDIDGSIESVGVDCGS
                     TGLQKLSYEQLLVQGDYVIFIPKWRMDAQKLLRQKNLTLKRVKALENLVAENDLMKDD
                     AEVLHLIYEKRLVDLESNEQDVVNTLNSRLRELHVQSTTIKTIIFDAKLQYRSNDIIE
                     ETYLQINTNSNELLERIQLEKDEINSFLSRITQPYSEIVSNESEDKDISKSQEDEDHV
                     SEMEMESDIVDTENTKNQRPTVSSDAQDGETEGNWLNEVLTKDTA"
     gene            6999..7265
                     /locus_tag="VFX26_00435"
     CDS             6999..7265
                     /locus_tag="VFX26_00435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEX5572970.1"
                     /translation="MKYRSRTEIVAMILEAANGGATKTRIMYKAFLSYAQLREYLSVL
                     IENNLLEYLEGSQNYKTTEKGLNFLKMHNEIGELLQTSIKEQRI"
     gene            7483..7623
                     /locus_tag="VFX26_00440"
     CDS             7483..7623
                     /locus_tag="VFX26_00440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572971.1"
                     /translation="MKCGICKEEIIREKRREHLRYHKLDDTLVEWIIETDDDLISSYE
                     KH"
     gene            7724..7858
                     /locus_tag="VFX26_00445"
     CDS             7724..7858
                     /locus_tag="VFX26_00445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572972.1"
                     /translation="MSDNPQVSCPYCSSKFSNNEELSKHIDRIHGDSGLLEGDRRQWK
                     "
BASE COUNT         2906 a         1417 c         1421 g         2538 t
ORIGIN      
        1 aaagcgagtc tggtgacgtt cgtaccctta catataacca attgtatgta gaggtaaata
       61 aattcgcaaa cgctttgcgt aatttgggaa taagaaaagg tgatagggtc acaatttacc
      121 tcccaatggt tcccgaattg cttattgcaa tgttggcttg tagcagaata ggagctacac
      181 acatcgttgt tttttctgga tttagttcgc aggcactaac tgatcgcata aacgattcaa
      241 aatctaaagt aatcataaca gctgatcaag gaataaggcg cggaaaaata cttgaactga
      301 aaaaaattgt cgatagtgcg attgcatcaa ctccctctat agaaaatgta attgtcctca
      361 aaagagcaat tgctgaaatc gaaatgaatg aaaaagacct tctgtggcat gaattagtaa
      421 agaaagaaaa atcctactgc aaacctgaaa ttgtcgaaag tactcatcca ctttacatcc
      481 tgtacacttc cggcactact ggaaaaccaa aaggcgtact gcatagtacc ggaggatatc
      541 ttactcatat ctatgcaaca gccaaatggg tctttgatta taaaaatgag gacatttttt
      601 tctgcactgc agacataggt tgggttacag gacatagtta catggtgtat gctcctctat
      661 tacatggagt gacaagtgtt atctatgagg gaactcctga tttcccgaca cctgatagat
      721 actgggcact gatcgaaaaa catagagcca caattctgta caccactcca accgcactgc
      781 gtatatacat gaaatacgac ctgtcaatac ctagtagttt tgatttgtca tcattgcgtc
      841 ttttaggtac cgttggtgaa gcaattaacc ctgaagtatg gttatggtat tttagagtga
      901 ttggaaaaga aaaatgtccc atcgttgaca catggtggca gaccgaaaca ggtggaatca
      961 tgataagtca atgtttaggt attgatgcaa tacccatgaa acctggatct ggaacttttc
     1021 cagtaccagg agttgatatt ggcatagtgg atgaaaaagg aatggatgtt aatcccaata
     1081 acaaaggata cctggttatt aagagaccgt ggccaggcat gttaatgaca ttgtggaaca
     1141 atgatgataa atatattaaa acatactgga acaaatttca aggattttat tattctggtg
     1201 attttgccct tttagatcag gataattata tttggttact aggcagatct gacgatgtac
     1261 tcaagattgc aggtcatcga ctaggtacca tggagttaga gagtgcattt gtatcattca
     1321 atgcaatagc cgaggcagca gtaatcagta aacctgatga ggaaaaagga gaagcaatag
     1381 tcgcatttct agtccttaaa gctggttaca aagagtctcc agaaatgaga acagatcttg
     1441 tcaatcacat tcgaaagaca gttggcccaa ttgctactcc aaatgaaatt tatttcacca
     1501 acaaattgcc aaagactaga agtggaaaaa taatgagaag attactaaaa tcaataagta
     1561 caaactctga gataattggt gacacaagca cacttgagga cgaagcttca gttgaagaaa
     1621 taaaacaagt gtatagagat tttcaagaca acactaaacg ataattacat cagaccaaaa
     1681 ttcaatatag cattttatac tgaaactaat tttatcttgg aatcttttgt gatattatga
     1741 taattgataa atcccgctgt tgctgccaaa atatatcttg ctggttttgt attcttatag
     1801 gtacattgtg cagcatccaa agtattctta catggtagtg catcctgttt catataaaca
     1861 atattgcctg caccatctaa ccaaattaga tccaaattga attgtatatt caacagccat
     1921 acggaataca gatcagattt gtcataaaca agaagaagag tggaattcag cggcagttct
     1981 tcgcttctaa aagtcaacca cctctgtcgt tcagctggcg tttcagcaat ttcggtgctt
     2041 attgagtgat tgtttataac tatcgtacct tttgaaaaat ctatattcct attcttaata
     2101 ccctctggaa cgaatgttaa acccaaaaca cccaatatta cacatccaat aataactggt
     2161 accagtaccg tgattttacg aaccacgtgt aaagctcttc aaaaatataa tttctacctt
     2221 ttgatttata ttctcactac acaaatcgac tcaaaattta ggatttttat atcggtgtta
     2281 taaaatagca cagtgtttaa atagtttcga atttacttct gtttaagtga attaaatgcc
     2341 agtagcaata attccagata ttagcgaaca acattgtatc ggctgtgctc tatgtgtcga
     2401 aatctgtact gctcttggtc cagacgtatt gagggtaaaa ccagttgagg gatggaagag
     2461 aggtaaagct tttgtattct atcctgaaag atgcatttca gatggtgcat gcataggggt
     2521 ttgcccaact aaagcaatat tttggatgag accaatggat tatacaccag gtcagcctat
     2581 tccactaaag aagaatggcc tgttcgcgaa gggatgggaa gaaggttaag ccaatacccc
     2641 aatattcatt tttttacaat ttttaaattt aataatttta atcatcgagt ctattgcata
     2701 ttattgtaat caattagtaa aatactgatt cattttgaga ttatttacgc tcaaagagtt
     2761 actcttaaca atgaaacaat tccaacaagt tctgctatat gtatagctac aaaataaggc
     2821 agtaaatcat ttggataaag tggggccata actaagtagg cgtatacagc tattaaatta
     2881 tgaagcatta acatgaccgt aaagaacatt agaccaattg taaataccgc tctacttttg
     2941 atgtatatct ttgtataaat cagtaacaat gtcaataaaa caccaacatt caacacgctt
     3001 atcaccgtac ttacattcat aaggaaactc atagttgagc aatacaataa tcaaattact
     3061 ttatctactt ttttccagat cccatccaat tcaattcatc tacgcatcga cataaaaaag
     3121 aaaaatagaa aaaaaataaa acaaagatca tgcaattata atccgatcaa tgggcttaga
     3181 tctaaaacca atcctgacac atactaattt aaaattaagt gatctttcaa acaagataat
     3241 tgctgtagat gctttcaata cgattcatca atttctagct acaattcgtg gatctacggg
     3301 agaacttctt gctaactttc atggagaaat aacaagccac ttgagcggac tattctatcg
     3361 taatatcaat ttacttgcgg aaggtatcaa actagtctat gtctttgacg gagtatccag
     3421 cccactaaaa actaatgaaa ttcaacgcag acatcaaatt aaggaaatag ctaccgaaaa
     3481 atatgagaaa gcacttgttc agggcaaact agaagaagca agaaaatata gtcaagcaac
     3541 atcagtcttg accaataaca tgatagaaga atcaaagaga ttgctttctt tattaggaat
     3601 acctacaata caagctccat ccgaaggaga agcgactgca gcaaacttaa ccaataccga
     3661 tctagtgcaa atttgcgcaa gtcaggatta tgattctatt ttatttggtg caaggcgact
     3721 cgtaagaaat atcacaataa gtggtaaaag aaaagttccc aacagaaatg cctacatcga
     3781 tgttccccta gaaatatttc atcttgaaga tatacttaac cagactaaat tgacgaatga
     3841 gcagctagtt gatgtaggaa tcttaatagg aacggactat aacattggag gtataccggg
     3901 aataggtcca aagaccgcat tgaaattaat acaaaaatat tcaaagttgg aaaatatcga
     3961 tcaacttcaa gaacctttgt ctaatgttcc ttatgaagaa attagagaac tgtttttgaa
     4021 accaaagatt gcgaatgtta caagcaatga tattaaattt gagcctgttg attatgacaa
     4081 gctagttgaa tttttatgta cggaaaaaaa cttttcatca gatcgtgtta attcagcctt
     4141 acaaaaggtc caaaattcag acaaaaataa gaaccaatca ttggaaaaat ggttctaatt
     4201 ctattctaat ttttgcataa ttatttttca tgagcatttt actaactttt tgaagataat
     4261 aattcccttc tcttcatttc ttttctcttt tcggtatcaa atcttccaag cccatattga
     4321 ttcagatcca caaatttcat ccctttcata agaagtgggt gaatatcatt gattttttta
     4381 aacatttgtt gacatatgta gcgataatca ggatgtcctt gtgccgtagt acgtaattca
     4441 atcacatggt acaattctct caaatttatc ttcataaaat atgggtattt ataggcaaaa
     4501 ttaacggcgt actgagcttc aaccggcata gtctttacaa tattttgata agtattactg
     4561 gaaagataca tgcaatcttt gaaatccttt tcaatacctg aatcaataat ttctttagga
     4621 atgtcatacc catgcttagt agaaagcaat tgtctttcca tagtaagaat tctatgacga
     4681 tgcaaatcac ggaacatccc aaagttagta aacatttcga acatatattc aaccatctca
     4741 aacgctctac ctggcctttg ccttctattt ccacgaaatt ttgtataggc caagattatt
     4801 tcatttcttc ttgcttgtgg aaatgatttg actaattttg ttatatcatg gagtgattgc
     4861 ccttttgcat tttcatataa tattgcagaa ataaccttca gttctgcatc tttactatcc
     4921 atataatcaa ttaatctcac atccacagga gaaaaatcag gcttaatatc ctccagatat
     4981 ttgtctgtca attttgatat ctccttgttg gtatttatca tgaatgattg aagagatttt
     5041 ccatgttttt catttacacg tttgataaaa gatggtataa cacagtcgag ttcagaattc
     5101 aataaatggg ctaaatcctt gagctcattc agttcggagc aatacaacct tgttaaaagg
     5161 tattcaaatg ctctaccatt tccagttata cctaaattgg taagagtaga ggcgggcagc
     5221 aaattacgaa gaatatcaag ggtttgggat cttaccgtac tgtgatatac cttcttagct
     5281 gattctatgt cttgatcgtt ccttagtttg gaaaagggtt tttctgattt tgaaattgaa
     5341 tcaaaataca taaaatcatc gattggttcc atttctgaga taaatctctg cattaccctg
     5401 atacttttac tataaacatt aaaggagtga tcacaagact ctatatatag atctgcgtat
     5461 tttgatttaa gtattctctc atccctataa tatttataca tgttaccaac tttcttatca
     5521 aaaggtatat accgagaaga tttttctaaa taggataatc caattctttg atcctctatc
     5581 ttttttgctg caatgtttga aatccactct acagcaattt gcgcttctcc caattccgca
     5641 acagaatcat caccatattc tgacaatatc ttactataga attcctgtcc tctgttcggg
     5701 tttgctacaa attcatccaa aaaaatcttt ctcattgttt tatcagatcg agaatatctc
     5761 gacatcagtg cacctctgtc gacttgtcta ggagttgtaa tcgcaaagac atgcttatct
     5821 gaattagaaa aatgttggtc gagtattgat ttttctttgt ccgaaaaatc atactcagtg
     5881 ttgaaattca taatattaat acaaaataat ccttatacat atttattcag ttttcaataa
     5941 tttcaaaata cttgcacatc aagtattaaa acatctacta aattattgat tatttttaac
     6001 attgccatca ttatatccat atatctactc aatctcatga gcgacataaa gctcgagttt
     6061 gtagggaaac aggtaaagga catgtatggc gcatacgtgg gtaaggtaat cggattagtc
     6121 accgatatcg atggttctat agagtcggtt ggtgtggatt gtggttcaac tggattgcag
     6181 aagctatcat acgaacagct gctcgtccag ggagactatg tgattttcat accaaagtgg
     6241 cgaatggacg cgcagaaatt actgagacaa aaaaatctta ctctcaagag ggttaaggca
     6301 cttgaaaact tggtagcaga aaacgatcta atgaaggatg acgctgaagt tctgcattta
     6361 atatatgaga agagattagt tgatttggaa agtaacgaac aggatgttgt aaatactttg
     6421 aattcaaggc tacgagaact gcatgtacaa agtactacca tcaaaacaat tattttcgat
     6481 gcaaagttac aatataggag taatgatatt attgaagaaa cgtatctaca aatcaataca
     6541 aattctaacg aattattaga gcgtattcaa ctggaaaaag atgaaataaa cagctttctc
     6601 tcaagaatta ctcaaccata ctcagagata gtctcaaatg aatcagaaga taaggacatt
     6661 agcaaaagtc aagaagatga agaccatgtt agtgaaatgg aaatggaatc tgacattgtt
     6721 gacactgaga acaccaaaaa ccaaaggccg acggtctcca gcgatgctca agatggtgag
     6781 acggaaggta attggctaaa tgaagtgctt actaaagata cagcttaatg gaccgcaaat
     6841 gaactaaacg aattaatatc atttcttttt taggcatatt attacagtaa attattcaga
     6901 tatataccgt ataacaatcc aagatgtagc gtgaatgtag ttatgttcta gattattgtg
     6961 ccaatacatt aaaataaata agtttagtgt atcttgatat gaaatacaga agtagaacag
     7021 aaatagtagc aatgatccta gaagcagcaa atggtggggc aacaaaaacc agaatcatgt
     7081 acaaagcctt tcttagctat gctcaattga gggagtacct ctctgtactt attgaaaata
     7141 atttactaga atatttagaa ggctcacaaa actacaaaac tacagaaaaa ggattgaatt
     7201 tcctgaagat gcataacgaa attggcgagc ttctacaaac ctcaataaag gaacaaagaa
     7261 tataagaaat aagctacttt ttcctttttt tactttattt ttttattttt tatatttaaa
     7321 gactaagaat tcttataaaa atgccatctg atatcgacct gagattcagc attaattaat
     7381 ttgtaattga cttactgtgg aataccattc taaatctaag aatatcacta gtgatatata
     7441 tgttaaaatt atactttgac attaccactc ccaaatcttt tcatgaaatg cggaatctgt
     7501 aaagaagaaa taattagaga aaaacgaaga gaacatctaa gataccataa attggatgat
     7561 acgctggtag aatggataat agaaaccgac gatgatttga tctcatctta cgaaaaacat
     7621 tagataattc gcgttggcaa gatatccaat ttttttagca tcttatcaag tattgatgca
     7681 ataaacaaaa gaattaattt gaacagatcc agatactatc atcatgtcag ataatcctca
     7741 agtctcatgt ccttattgct catcaaaatt tagcaataac gaagagttat ccaaacatat
     7801 tgatagaata catggtgatt ctggtttatt agaaggcgac cgaagacagt ggaaatagat
     7861 catgaatcaa ataacatatc caacacaatc acaagttctc cagattagtt ttataagatt
     7921 cacactacct ggttataatc tgacattaga ttaccactga cattagatta ccacaatatc
     7981 aaatatcata ttatagtatc aataacatgc cgaccgaaac aattgtaaat tatcttttaa
     8041 catgtcatga agaacgatat gcattttggt attatgataa aaaagagtta tatttccgat
     8101 tcaatatagt ttaggtagat agaaatgagt tcccgactga tcgggaaaaa aaacaaatac
     8161 caaaaacatg agtatttgag aaacagtatt gagttggaat atagagaatg caagtcgtgt
     8221 aaagtgagaa cacaatttgc ctgtgttgtt tgtgggtttt gctggagctg tcactggaaa
     8281 gt
//
LOCUS       DASUMD010000022         4148 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1222088, whole genome shotgun sequence.
ACCESSION   DASUMD010000022 DASUMD010000000
VERSION     DASUMD010000022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4148)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4148)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4148
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1222088"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(82..408)
                     /locus_tag="VFX26_00450"
     CDS             complement(82..408)
                     /locus_tag="VFX26_00450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572973.1"
                     /translation="MIATHHMIIEIKYIHIDIGFVVIRKPVLLIDDTENSRLAKELLE
                     NNSVKFVEYHIRKFEENCCVDLPTTKAPALFAPEGIFRNLEGIKEYLTIEKKSTTSEL
                     SESAYW"
     gene            687..2000
                     /locus_tag="VFX26_00455"
     CDS             687..2000
                     /locus_tag="VFX26_00455"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF016724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEX5572974.1"
                     /translation="MLTAILNLKFPFELKDDQRMAVDAWLNNNFKGSIIYSTGTGKTE
                     IAFECARRLAEINDNNIVALSPKSESYNKPNQDFRILFLVPRIVLIEQNVNRLINYGL
                     SRESIGTFFGEQKDIREITIGTYQSVINHLDLIRDSDMLILDEIHLLSETAKEFSKIF
                     DTIKEDPTKAILGLTATINENDPRYDTIIRTLPPVKKYMIRDAVSDGRLAKPHVVSIP
                     VSFTESEKKIYIETTNKISFLSRKLGAFDPKKISIFLFKGGYNAKLAKLWFENVRKRK
                     ELLSSAQNKMLSAANIVKNHHSEPIMIFSETIDSIMKLEKTLESSGIASRSIHNKIPV
                     TQRKKILEDWGKEYFPLLSVHTLEIGYDIPDVRIAIIISNSSNFNQVAQRIGRVIRKT
                     SKKNYALIYVIYIRDSKDNSTLKMVKSTIDFSDKNNQLKLTSFGT"
     gene            complement(2054..3415)
                     /locus_tag="VFX26_00460"
     CDS             complement(2054..3415)
                     /locus_tag="VFX26_00460"
                     /inference="COORDINATES: protein motif:HMM:NF016724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HEX5572975.1"
                     /translation="MSSKSVTLEYHRGTIVIKGLDSLPYSTIDSRTNSLYSFGKYYKK
                     ITEYLDEKNIKYEDRVLDLLPLGHLPKIKVKLRDYQKEAIEHWRKQKTGAIVLPTGAG
                     KTIVGLKIIEIVNSPTLIVVPTLDLVKQWTKILSQSFNIEIGNIGGGTENIQAITVST
                     YDSAYIKAQSIGNKFLLIVFDEVHHLPAPSYRLIAETFVAPYRLGLTATIEREDHLEE
                     DFPNLIGKSTFRIAADELAKNNYLANYTIERKQTYMSKEEYLEYKENMTIYHTCLKKI
                     GLKMNSYNSFKRLIMISSRNNMARHAFVARNKAIDIALNSRSKMNEIAKILYENRDIK
                     TIIFTQYNKQVYEISNDFLIPFITYKSTKEEREDVLSGFKDGRYKAIVTSKVLDEGID
                     VPDAQLGILVSGTGSSREFIQRLGRLLRPKNNNKKARLIEIVSSGTSEKLTSERRHRN
                     MLK"
     gene            complement(3590..3838)
                     /locus_tag="VFX26_00465"
     CDS             complement(3590..3838)
                     /locus_tag="VFX26_00465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572976.1"
                     /translation="MSSKVDHLENHPDLAGELRDFLRNFGSNKESDEAIKGVKNKDKS
                     PTNMKMIDSNKTPREKINIEIDLIQRTTVFSSYPSMWI"
BASE COUNT         1351 a          688 c          679 g         1430 t
ORIGIN      
        1 tatttagttc gcgttttccg aactatgtga gttaggcaaa tgaaacgtgc aaacaattat
       61 gagtctcatt ttcgatgcag attaccagta agcactctca ctaagttcac ttgtagtact
      121 ctttttttca atagtaagat attctttaat tccttcgaga ttcctaaata taccttcagg
      181 tgcaaataat gctggggcct ttgtggttgg taggtccaca cagcaatttt cttcaaattt
      241 tcttatatga tattcaacaa atttgacact gttgttttcc agaagttctt tagcaagccg
      301 ggaattctct gtgtcatcaa tcaacagaac aggtttgcga ataaccacaa atccaatatc
      361 tatatggatg tatttaattt caattatcat atgatgtgtt gcaatcatgg tttgactaat
      421 tcgacctaaa gcacaatggc tacaaaaatt agaaacaggc aatatcttat tttattttat
      481 ttattagata tacaatgcac taagtagata ctagctaata acaagctctc caattgtttc
      541 aaagttacta tcttaacaag aatgaattga gcctgtgagt tctcaaattt tacactgtta
      601 gagactttgt agaatcaaga ttttatgaat tagaaatagg ttggcaggta gcagtaaaga
      661 atttagaaga tagatccgaa tttagagtgt tgactgctat cctaaatctc aagttccctt
      721 ttgaactcaa ggatgatcaa cggatggctg tcgatgcgtg gttaaataat aattttaagg
      781 gttcaataat ctatagtact ggaactggaa aaactgaaat tgcatttgaa tgcgcgcgga
      841 gattagcaga aataaatgat aacaatatcg ttgcattatc tcctaaatct gaaagttata
      901 acaaaccaaa ccaagatttt aggattttat ttcttgtacc aagaattgtt cttattgagc
      961 agaatgtgaa tcgtctaatt aactacggtt tgtcaagaga atccattggc acattttttg
     1021 gcgaacagaa agacataagg gaaattacta tcgggactta tcaaagcgtt ataaatcatt
     1081 tagacctcat cagagattcc gacatgctaa ttcttgatga aatacatttg ctgagtgaaa
     1141 cagccaaaga atttagcaaa atatttgata caataaagga agatccaact aaagcgattt
     1201 tgggattaac tgctaccata aatgagaatg atccacgcta tgacacaata attagaactt
     1261 tacctcctgt taagaaatat atgattagag atgcagtatc agacggaaga ttggctaaac
     1321 cacatgttgt ttctataccc gtgagtttta cggaatctga aaaaaaaatc tatatcgaga
     1381 ctacgaacaa gatatctttc ttatcacgga aactaggagc atttgatcca aaaaaaattt
     1441 caatcttctt attcaaagga ggttataacg caaaattagc aaaattgtgg tttgagaacg
     1501 ttagaaaaag aaaagaatta ctcagctcgg cccaaaacaa gatgttgtct gctgcaaata
     1561 tagtaaaaaa ccatcattca gaaccgataa tgatatttag tgagactatt gactcaataa
     1621 tgaagttaga aaaaacatta gaatcgtccg gaatagcttc tagatctatt cataacaaga
     1681 tacccgttac tcaaagaaag aaaatcttag aagattgggg gaaagagtac tttccgttgc
     1741 tatctgttca tacgcttgag attggatatg acatacctga cgtcagaata gcaataataa
     1801 tttcaaatag ctcaaatttt aatcaggtag cacaaagaat tggtagagtg ataagaaaaa
     1861 caagcaagaa aaactacgca ttgatatatg tgatttatat aagagattcc aaagacaata
     1921 gtactcttaa aatggtaaag tctactattg acttttccga taaaaataac caactaaagt
     1981 tgacatcatt tggaacctaa tatttggttc tatttcggaa taaaaattat aaatcgagtt
     2041 aagatctgta aatttatttc agcatatttc tatgtcttct ttcactagtt aatttttctg
     2101 atgtaccact ggatacaatc tcaattaatc ttgctttttt attattattc tttggtctca
     2161 agagtctgcc caatctttgt atgaactctc tactactacc agtcccacta accaaaatcc
     2221 ccagttgtgc atcaggaaca tcgattcctt catccaatac ctttgaggta acaattgcct
     2281 tatatctacc gtccttaaaa ccgctaagga cgtcttctct ttcctcttta gtagacttgt
     2341 atgtaataaa cgggataaga aaatcatttg atatttcata tacctgtttg ttatactgtg
     2401 taaagattat tgttttgata tctctatttt catataatat tttcgcaatc tcattcattt
     2461 tagatctgct attgagggct atgtcaattg ctttgtttct tgctacaaag gcgtgtctgg
     2521 ccatattgtt tcttgatgag atcatgatta atcgtttgaa ggagttatag gaattcatct
     2581 ttaacccaat tttttttaga catgtgtgat atatggtcat attttcttta tactccagat
     2641 attcttcttt tgacatgtat gtttgttttc tttctatagt atagtttgct agataattgt
     2701 ttttggctag ctcatctgct gcaattcgaa atgtggattt tccaatcaaa tttggaaaat
     2761 cctcctccaa atgatcttcg cgttctatag tagctgttaa acctaatctg taaggtgcta
     2821 cgaatgtttc tgcaattagt ctatatgatg gtgctggcaa atgatgaacc tcgtcaaata
     2881 ctattaagag gaacttgttc ccaatcgatt gggctttaat atacgctgaa tcatatgttg
     2941 atacggtaat tgcttgaata ttctcggtac ctccaccgat atttcctatt tcaatattga
     3001 aactttgtga gagaattttg gtccactgtt tgacaagatc aagtgtaggg acgacgatca
     3061 gcgttggaga atttacaatt tcaataattt ttaaaccaac tatggttttt cccgctcctg
     3121 taggaagaac tatggctccc gttttttgtt tacgccaatg ctctattgct tctttttgat
     3181 aatcgcgtag cttgacctta atttttggaa gatgtccgag aggtaacaga tccaatacac
     3241 gatcctcata ttttatgttc ttttcatcaa gatattcagt tattttttta tagtatttgc
     3301 caaatgagta caaggaattt gtccttgaat ctattgttga gtaaggtaaa ctatcaagcc
     3361 cctttatcac tattgttcct ctatgatatt ctaatgtaac cgatttagaa ctcaattagt
     3421 taatttctaa ttaatgatca tttttaaatc atatcagata gacaaatggt aactacgatg
     3481 attgtctcag aatcgtttac gtgtagtgtg tccggttact ccaaaatatt ctagctatca
     3541 ggaaaaaatc aatataattc agaactgctg cacagtaatt atcatgaact caaatccaca
     3601 tagatggata actactgaaa accgttgttc tctgaattag atctatttca atattgattt
     3661 tttcgcgagg tgttttgttc gaatctatca ttttcatgtt cgttggagat ttatccttat
     3721 ttttaacccc cttgattgcc tcatcgctct ctttattact cccaaaattc ctcagaaaat
     3781 ctctcaattc tcccgctaag tctggatgat tttccaaatg atctactttt gaactcatcg
     3841 tattacaaaa tacataatat gttaataatg atcaatagtt aaaactattt gtcaaagcga
     3901 gtaatgaaat tgaattagtt gatacttcct ttcaagtatg attaaattgt gttgcatttg
     3961 tgaatcgtat taactagatc caattttatc ctcaatgata ccatagtata atgaatagag
     4021 agtccataat aattttttca agatgcgaag tacgataata taagcaagtt tcaatattaa
     4081 ggaatagtat aaaggacatg ggtatttcta acgattcaat cgatcggata aaattagagg
     4141 ttatcaat
//
LOCUS       DASUMD010000023         5176 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_6099, whole genome shotgun sequence.
ACCESSION   DASUMD010000023 DASUMD010000000
VERSION     DASUMD010000023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5176)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5176)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5176
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6099"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..310
                     /locus_tag="VFX26_00470"
     CDS             <1..310
                     /locus_tag="VFX26_00470"
                     /inference="COORDINATES: protein motif:HMM:NF024864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HEX5572977.1"
                     /translation="NQTASSGTEIIISPGSSAPTATKFYDPPTLTVPAGTTVTWKNAD
                     STLHTVTSGSAESGESGSAFDSSYLAAGKTFPWTFSTAGTFDYYCTLHPFMKGQVVVN
                     "
     gene            complement(435..2345)
                     /locus_tag="VFX26_00475"
     CDS             complement(435..2345)
                     /locus_tag="VFX26_00475"
                     /inference="COORDINATES: protein motif:HMM:NF012861.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HEX5572978.1"
                     /translation="MGRFDWTTLDLVYLRKWTVIGVIIGVLSGLLVITAYEAIRIFSS
                     FFLSDIVRYIQPYPEDVANLSSEYSLYVLKPWLIPVILGLIGLIIGILSMKLSTAIGK
                     NGIDEISDEFHNKKNQFSLKISSLRSFSSFLAIGSGMSGGVEDSLAHTGSTLASIIGR
                     IFKLDQEEIRIAIAAGMGSTIGGILRLPFGGAIFSLELLYRRDFIIKSLYPAFLASIT
                     SYIISGIVLDWPSFLYIPQEFITKTSLQSIAAYGMIAAIIGIIGIGYVKTVQIFQRHF
                     ENMRVPLYFKPALGGVIIGMFAIGFPEILGTGYGWLQLAALGNHQIFPLWIMFPVIVM
                     KIFATSVSNASRNSTGLLGPSLVIGGLVGSALITLFHSFGIFMFIDTTSATLISIFAF
                     FTASTRTPISAIVIGIEMVGSYTLLIPTVISVIISNIISGKNNYIYKNYVTNIRTQLL
                     NAKKHDSKLRNYLVRDVMNSDFYNINHNATISDAVQIMRDLNVKSLVVTNNEDKFEGM
                     VYFEDLSSVSKIQENMTVKSIMVDDPPMLRPLDTIMDYFELISKTAVSEIPVISPDDD
                     KLVLSILSLRDINKLLNNINDPIFPDLEKSNSKLQKVINSDTFHNLSEDEEFNKLDKD
                     NKIISRLKDYWS"
     gene            2577..2756
                     /locus_tag="VFX26_00480"
     CDS             2577..2756
                     /locus_tag="VFX26_00480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572979.1"
                     /translation="MNLLLLVSAIFCIVLLLFIAYAFINNSDFKLIDDSANSGTLPEI
                     DTSSENDTTNETENQ"
     gene            complement(2828..3397)
                     /locus_tag="VFX26_00485"
     CDS             complement(2828..3397)
                     /locus_tag="VFX26_00485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572980.1"
                     /translation="MSKKISVVFILVCFFFTILVIIPTLKESGFGFLQTSDLSNNTNA
                     TVANSTQISTNATVANSTQISKTVQITAADSKAATDGNSVDIDLQIQPYPISKNVDSQ
                     FMITFLQPSSQTVQVHVDYDFAITNNDTEVYRASTKTGQPLLHTAEGIVKIPYKFDQG
                     GEYSLQVSVMGINFIPIKTEQALFDLKVS"
     gene            3736..4839
                     /locus_tag="VFX26_00490"
     CDS             3736..4839
                     /locus_tag="VFX26_00490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572981.1"
                     /translation="MSRSSCTAHFTIISLSLILMGTTVLQSGSSQVPNTFSVSSIILG
                     NDKPISVAIDEKTSKIYGTFATDSGAKNLIYVIDTAQNKVIDTIKIGSENNDFLSNIA
                     LDPSRGVLYATGQHIVNENDTTIAYDTLYVINSTDNKFKRIQLYGETEEGKEGSLAGI
                     SINPVTNQIYVGSLYPEGGKPGIYVIDGNSLQSVYIDKWQYGIKDILLDPESNLLYAG
                     AKYDNMISVIDQSNNQIVDNITVQSPIALTLNPEKKILYEAGTDGKVNAIDLSTKKNL
                     SGIQGEFVKNILYNPNDKLLYIIDQNMTNILSKNSNGTKSMAIAVNTTNNVINKFETD
                     FIVENILIDSSTDQAYLFGYDGNNSKLFVAKSH"
BASE COUNT         1752 a          900 c          827 g         1697 t
ORIGIN      
        1 aaaccaaaca gcatcatctg gtactgaaat aatcatttct ccaggatcct ctgctccaac
       61 tgctaccaaa ttctatgatc ctccaacttt aacggtacca gcaggtacca cagtaacttg
      121 gaaaaatgca gattctactc tccatactgt aacttcaggc agtgctgaaa gtggcgaatc
      181 tggttcagca ttcgactcaa gttatctggc ggcaggaaaa acatttccat ggacattcag
      241 taccgcagga acatttgact actattgtac tcttcatcct tttatgaagg gtcaagtagt
      301 ggtaaactaa attctttttt tctctttttt ataaaataaa attcacatct tattattttc
      361 tatctagaat tagtaattag gtttacaaga taaaactagg ttaaggtata ctatattcat
      421 aaagtcttgt cttatcaaga ccagtagtct tttaacctgc ttatgatttt attatcctta
      481 tcgagcttat tgaactcttc gtcctcagac aaattgtgaa aagtatcact attgataacc
      541 ttttgcaatt tgctgttact cttttctaaa tcaggaaaga ttggatcatt gatattgttc
      601 aataatttgt ttatatcacg tagtgataat attgacagga ctaatttatc atcatcgggt
      661 gaaattactg gaatttcaga cacagcagtt ttacttatca attcaaaata gtccataatt
      721 gtatccaaag ggcgaagcat gggtggatca tctaccatga tagatttaac agtcatattc
      781 tcttgaattt ttgagacact tgataaatct tcaaaataaa ccatgccttc aaatttatct
      841 tcattattag taacaactag tgatttgaca tttaagtctc tcattatctg cacagcatca
      901 cttatcgttg cattatgatt tatgttatag aaatctgaat tcatcacatc tcttaccagg
      961 taatttctta acttcgaatc atgtttcttt gcatttaaca attgcgtcct tatattagta
     1021 acatagtttt tgtagatata gttattttta ccagatataa tatttgatat gatcaccgat
     1081 atgacggtgg gaatgagcaa agtataactc ccgaccatct caatcccaat tactattgca
     1141 gaaatcggag ttctagtact tgcggtaaag aaagcaaata ttgatatcaa agtagcagac
     1201 gttgtgtcta taaacatgaa aattccaaaa gagtgaaata atgtaattaa tgccgagcca
     1261 acaagaccgc ctataaccaa tgaagggcca agtagacccg tactattccg tgaagcatta
     1321 gaaacagatg tcgcaaagat tttcatcaca attactggga acataatcca cagcggaaag
     1381 atttgatgat taccaagagc tgcaagttgt aaccatccat accctgtacc tagtatttcg
     1441 ggaaaaccaa ttgcaaacat gccaataata actccaccaa gtgcaggctt gaaataaagt
     1501 gggactctca tattttcaaa atgtctctga aaaatctgta ccgttttcac atatccaatt
     1561 cctattattc ctatgatagc agcaatcata ccatatgctg ctatggattg aagacttgtt
     1621 tttgtgataa actcttgtgg gatatatagg aaagaaggcc aatccaaaac aattcctgaa
     1681 ataatgtaac ttgttattga tgctaggaac gctggataca gcgatttaat aatgaaatct
     1741 ctacgatata gtaattctaa actaaaaatt gctcccccaa agggtaacct taagatacct
     1801 ccaatcgttg aacccattcc ggcagcaatc gcaatacgaa tttcctcctg gtcaagtttg
     1861 aaaattctac ctattattga tgcaagtgtg gaaccagtat gcgctaagga atcctcaacc
     1921 ccaccactca ttccactccc tatagcaaga aaactggaga atgatcttaa ggatgaaatc
     1981 ttcagactaa attgattttt cttgttatga aattcatcac tgatctcatc tatgccgttt
     2041 ttaccaatcg ccgttgataa cttcattgaa agtattccaa tgattaaacc aattaatcct
     2101 aaaattactg gaataagcca tggttttaag acatataaag aatattccga agacaagttt
     2161 gctacatctt ctggatatgg ttggatgtat ctcactatat cactaaggaa aaatgatgaa
     2221 aaaatcctga tagcttcata agccgtaatt actaataatc cggatagaac tcctatgatt
     2281 acgccgataa ctgtccattt cctcaggtat acaagatcaa gggttgtcca gtcaaatcta
     2341 cccacaaatc tttctatata tcttgataaa ttcaatttga tttatggaca ttgtgatgat
     2401 attattggct gatattcatt gagctcagtt aatatttaca atttttgtta aaattattat
     2461 cctcatgtat atctcaagaa catatttcat gtgaatcata attcgtgttt tgaatttaca
     2521 taactctctc aatttttaat actaatttaa attactcaaa aatatccaat acagcaatga
     2581 atttgcttct actagttagt gcgatattct gcatagtact attactgttt atcgcctatg
     2641 cgtttatcaa caatagtgat ttcaaattaa ttgatgattc tgcaaattct ggtactcttc
     2701 cagaaattga tacatcatct gagaatgaca caacaaatga gacagaaaat caataatttg
     2761 tataatttat gtaattctag ttgactttag ctttggttgg agtaatccca attggtatcg
     2821 gtttggttca gctcactttc aaatcaaata gcgcctgctc tgtttttatt ggaataaaat
     2881 taattcccat gacgcttact tgtagtgaat attctcctcc ttgatcgaat ttatatggaa
     2941 ttttgacgat tccttcggct gtgtgaagca aaggttgtcc ggttttcgta gatgctctat
     3001 agacctcggt atcgttattg gttattgcaa aatcatagtc cacatggact tgcactgttt
     3061 gcgatgatgg ttgtaaaaat gtaatcataa attgcgagtc tacgtttttt gatattggat
     3121 aaggttgaat ttgcaaatca atatctacac tatttccatc tgtagccgcc ttagaatcag
     3181 cagcagtaat ttgcacagtt tttgaaattt gcgtactatt agccactgtc gcattagttg
     3241 aaatttgcgt actattagcc actgtcgcgt tagtattatt cgacaaatct gaagtctgca
     3301 aaaaaccaaa acctgattcc tttagagtgg gaataataac aagtattgta aagaagaaac
     3361 aaactagaat gaatactaca ctaatttttt tactcattat ttaagataaa aataattgtc
     3421 taataaatct tacaatatcc aaacctgtaa aaattttatt tagctttaat ttcaagacct
     3481 gatgcgttca ggactcaact caatttttga tttttgaggt aattgtctga tgtactctag
     3541 ctctcttggt gtgcgtattg gtgattaagg tgttaggcaa actttaatgg gatccagatc
     3601 ccgttctata atgtcaatta ttcagtttta gaatattact gaaaatccaa agaagaatta
     3661 atagcaacaa acatttttcc attattaagt ttctatatct ttaataagta aattctaata
     3721 atcattgata tgaatatgtc taggagttcc tgtactgcac attttaccat aatttctctc
     3781 agtttgatat tgatgggaac gactgtatta caatcaggct cttcgcaagt tcctaacacg
     3841 ttttcggtat cttcaatcat tcttggaaat gataaaccaa tctctgtggc aattgatgaa
     3901 aaaacaagca aaatctatgg gacatttgcg accgatagtg gagcaaagaa cttgatctat
     3961 gttatcgata ctgctcagaa caaagtaata gacacaatta agattggatc cgaaaataac
     4021 gactttcttt ccaatattgc attagatcct agcagaggag ttttgtatgc aacaggtcag
     4081 catattgtta acgaaaatga taccactatt gcatatgata ctttgtatgt tatcaactca
     4141 actgacaata aattcaagag aattcaattg tacggtgaaa ctgaagaagg caaagaaggt
     4201 tcactggcag ggatatctat taatcctgtt accaatcaaa tatatgttgg ttcgttatat
     4261 cctgagggtg gtaagcccgg aatttatgta atagatggaa attcgttaca atctgtctat
     4321 atagataaat ggcaatatgg tataaaagat attctattag atccggaatc taatttatta
     4381 tatgcaggtg caaaatacga caatatgatt tccgtaatag atcagtcaaa taaccaaatt
     4441 gttgataaca taacagtgca aagtccaata gcactaactc ttaaccccga gaaaaagatt
     4501 ttgtacgaag caggcactga cggaaaagtt aatgctatag atctttcaac caagaaaaac
     4561 ctatcaggta tacaaggcga atttgtaaaa aatatcttgt ataatccaaa tgacaaatta
     4621 ctctatataa tcgaccaaaa catgactaac attttgtcca aaaattcaaa cggcaccaaa
     4681 agtatggcta tagcagtaaa tacgaccaac aatgttatca ataaatttga aacagatttc
     4741 attgttgaga atatcctcat agattcctca acagatcagg catatctttt cggttatgac
     4801 ggtaataatt caaaactatt tgttgcaaaa tcacattaaa aaactcaaga tcaaaaactg
     4861 ctcaaatatc atgttactct catagccttc agtatccagt agacaaaatc gagtagaaaa
     4921 tgtattcagt gtcaggaaga atgatgattt ctaatagaac tctttttgtc cattcagatc
     4981 aagtgctgac ggtatcataa agatatacta tgatatcttt gattaataga atgataaatc
     5041 atatgcaaaa aagatacttt tgttttgaat gtggtacaaa tgttcttgca gaaaagatgg
     5101 aaaatagaat agcggattgg tttggtatct gtaaacgatg taataagaat aatatttatt
     5161 cagttgatta aatcaa
//
LOCUS       DASUMD010000024         2919 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1001015, whole genome shotgun sequence.
ACCESSION   DASUMD010000024 DASUMD010000000
VERSION     DASUMD010000024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2919)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2919)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2919
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1001015"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..745
                     /locus_tag="VFX26_00495"
     CDS             <1..745
                     /locus_tag="VFX26_00495"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX5572982.1"
                     /translation="RLPTITYRVSVDFGKVERTRFDGFDSEDLFGSTINVCSKMNLYA
                     QPNGIVVGNDLYRVIRSFKQLDDGYAFHEMDSYYCGTGKYSYPLYSLSRMKQTNVAPV
                     NPLNSSLHDIKKYMINGVRSLRIPKILLIDDELDDLFVLEKFLINAGFEVNPFSSPRE
                     ALRHYANADPLSYDLVISDIRMPEINGFQLYHKLRAINDNVKIVFATCLEIVEEISAL
                     LPEFKEEQLIRKPVEKEKFIEIVKKNMSK"
     gene            793..993
                     /locus_tag="VFX26_00500"
     CDS             793..993
                     /locus_tag="VFX26_00500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572983.1"
                     /translation="MVSFENVLESIAKCFYIAHDKIVKAMVLTSNNLSNSWVPCLLYF
                     GDCVSEKNLYEAEEKEISNILY"
     gene            1135..2811
                     /locus_tag="VFX26_00505"
     CDS             1135..2811
                     /locus_tag="VFX26_00505"
                     /inference="COORDINATES: protein motif:HMM:NF014763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEX5572984.1"
                     /translation="MAEQIDRQQAASKSLSQHIGSDLSLVMTVLDGLTNSVYIQNGNI
                     YDVKNTNGLLIDKYGLIDDIIDKIFVLDKNDIVTAGVSQVGMDKYLGADFSQREWVKD
                     AKQNQTAVFSKGFERQGIYSIYIAVPIINREDGHYVGLIGATIPTERFFARYGNVHDI
                     NSQFLVIFDKDGTILAVGADRSLVGKDFFGTTVQNFIDHNEVLNNLTRTLLKGNSAYA
                     IYDYGKTERINTAQPIIVGNKPTYFLEVVTPTKTVFSKMSETLFTERLKGYSLLVAVF
                     ASVGSLTIFLLKWSNTMEKEVVKRTNALNKSNLKLGFMSQQLKKSNLSLQNANEQLKQ
                     HDKIQKEFINMAAHELRTPIQPILGLTDVLRDHISDSHQVQLLDVIMRNARRLQRLSR
                     DILDVSKIESSLLKLSKTSFELNDKIKTVLNDIEHGNDNEGNNNKILFESKELITVFA
                     DRDRIYQVLTNLLNNALKFTKNGTITVNTSLNDSKEVIVTIIDTGIGIPPEIVPKLFS
                     KFVTTSNQGTGLGLFISKGIIEAHGGRIWAENNSDGVGARISFSLPITEP"
BASE COUNT         1023 a          463 c          551 g          882 t
ORIGIN      
        1 gcgattacca acgatcacat atagggtaag tgttgatttt ggaaaagtgg agagaacgcg
       61 attcgatgga tttgatagtg aggatctatt tggatcaaca ataaatgtgt gctctaaaat
      121 gaatttatat gcacaaccca atggtattgt agtaggaaac gatctttatc gagtaataag
      181 atcattcaag caacttgatg atggatatgc atttcacgaa atggatagtt attattgcgg
      241 tactggaaag tactcctacc ccctttattc actttcaaga atgaagcaga caaacgtagc
      301 gcctgtaaat cctctaaact cctctttgca tgatataaaa aaatatatga tcaatggggt
      361 taggtcatta cgaattccaa aaattttact catagatgat gaattagatg atctattcgt
      421 gttagaaaaa tttctaatca atgcgggatt cgaagttaat ccattttcaa gtcccaggga
      481 agcactcaga cattatgcaa atgcagatcc cttgtcttac gacctggtaa ttagtgatat
      541 aagaatgccg gaaatcaacg gttttcagct ctatcacaaa ttaagagcca ttaatgacaa
      601 tgtgaagata gttttcgcca catgtctaga aatagtcgaa gaaatctcag cattgctccc
      661 tgaattcaaa gaggaacaac taataagaaa gcccgtagag aaggaaaaat ttatcgaaat
      721 agtgaaaaaa aatatgagta aatagttcta tcatgaaatt ggacctcaag aataaaagac
      781 aggaggaaaa ttatggtgtc ttttgaaaat gtacttgaaa gtattgcaaa atgcttctat
      841 atcgctcatg ataaaattgt caaggccatg gtgctgacga gtaacaatct atcaaattca
      901 tgggttcctt gccttttata ttttggcgac tgcgtttctg aaaaaaactt gtacgaagca
      961 gaggaaaagg aaattagtaa catactttat taatagaaat gtaactacat gcgtttatca
     1021 ttaccacgga tttataggat tggaattatc tctgtgattt caattgtcat attttcattt
     1081 gctttatttt attacattca aactgtaaca gagaataatc tgagaaacag tcttatggct
     1141 gagcaaattg atcgacagca ggctgcttca aaaagtctgt ctcaacatat aggttcagat
     1201 ctttcgttgg ttatgactgt ccttgacggt ttgacaaatt ctgtatacat tcagaatgga
     1261 aatatctacg atgtaaaaaa tacaaacgga ttgctaattg ataagtatgg gttaatagat
     1321 gatataatag acaaaatttt tgtattggac aaaaatgata ttgtaactgc tggtgtatct
     1381 caagttggta tggataaata ccttggcgcc gatttttcgc aaagagaatg ggtaaaggac
     1441 gccaaacaaa atcaaacggc tgtattttct aaaggttttg aaagacaggg tatatactca
     1501 atctatattg ccgttcccat cataaatagg gaagatggac attacgttgg attaataggc
     1561 gccacaatac caactgaaag attttttgca cggtatggaa acgtacatga tataaattcc
     1621 caatttttgg taatatttga taaggatggg actatccttg ccgtaggcgc tgataggagc
     1681 cttgtcggaa aagatttttt tggtactaca gttcagaact ttatagatca taacgaggtt
     1741 ctgaacaatc tgacgcgaac tctccttaaa gggaattctg cctatgccat atatgattat
     1801 gggaagacag aaaggatcaa tactgcacag cccattattg tgggaaataa accaacatac
     1861 tttcttgagg tagtaacgcc aactaaaaca gttttttcaa agatgtcaga gacactattt
     1921 acagaaagac taaagggcta ttctctacta gtcgcagttt ttgcttctgt tggatcctta
     1981 acaatatttt tacttaaatg gagtaatact atggaaaagg aggtagtcaa aagaactaat
     2041 gcccttaaca aatctaatct caaactaggt ttcatgtccc aacagcttaa aaaatctaat
     2101 ctttcattgc agaatgctaa tgaacaattg aaacaacatg acaagataca aaaagagttt
     2161 ataaacatgg ctgcacatga gttgcgtact ccaattcaac ctatcctggg acttaccgac
     2221 gttttacggg atcacatatc cgactctcat caggtgcaac ttttggatgt cataatgagg
     2281 aacgcaagaa gacttcaaag actatctcgt gatattttgg acgtatcgaa gattgaaagc
     2341 agtttattga agctttccaa aacttcattt gaacttaatg ataaaattaa aactgtatta
     2401 aatgatattg aacatggtaa tgataatgaa ggcaataata ataagatact tttcgaatct
     2461 aaagaactaa ttactgtatt tgcagataga gacagaattt atcaagtact taccaattta
     2521 ctgaataatg cactgaagtt tactaaaaac gggacgatta ccgtaaatac tagtttaaat
     2581 gacagtaagg aggtaattgt tactataata gatacaggta ttggtattcc tccagaaata
     2641 gtgccaaagc ttttttcaaa gtttgttact acatcaaatc aaggtacggg cttgggactt
     2701 tttatttcaa aaggtatcat agaggcacat ggaggaagga tatgggctga aaataactca
     2761 gatggtgtgg gtgcaagaat ttcattcagc ttgcctatta cagaacctta attaaatcca
     2821 aggatattat tatgaaacac atctttacta gttttccatc tctaggcaat cgacgctaga
     2881 tatttaatat ttaataatga cttaaacaag acagattga
//
LOCUS       DASUMD010000025         4617 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1222173, whole genome shotgun sequence.
ACCESSION   DASUMD010000025 DASUMD010000000
VERSION     DASUMD010000025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4617)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4617)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4617
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1222173"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..245
                     /locus_tag="VFX26_00510"
     CDS             <1..245
                     /locus_tag="VFX26_00510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572985.1"
                     /translation="PEGTCVPAKGEGVVCTEVQGTETAEGAENQTEADAQAEGETGEN
                     GNGDGANANGNEGNGNGESEVTQNATMLNTRSSNMN"
     gene            610..2082
                     /locus_tag="VFX26_00515"
     CDS             610..2082
                     /locus_tag="VFX26_00515"
                     /EC_number="6.5.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008452 - RNA ligase activity [Evidence
                     IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RtcB family protein"
                     /protein_id="HEX5572986.1"
                     /translation="MKNLITRVGNHEIVNEGDFKYVIKKDESRGMRVPVTIYADENLV
                     SKMALDRTIDQAANVATLRGVMKHVVVLPDGHEGYGFPVGGVAGMDLEEGVISPGGVG
                     YDINCGVRLIRTNLSEQEVRPKLKDLVNELFHAIPSGVGSSSSRKVTGSELDELLIEG
                     VKWTVQKGYGRESDIDVCEENGCMKGADPTQVSDLARKRGGPQLGTLGSGNHFLEVQK
                     VDKIFDEKAAGAMGIEEGQVTILIHCGSRGFGHQVCSDYLKISEKKIRESGMKIIDRE
                     LACVPNNSEEGENYRKAMYSALNFAWSNRQMITHSTRNTFEKVMGMTEGDADMNLVYD
                     VSHNIAKVERHTIDGEGTRDLVIHRKGATRAFPAGDNHIPDKYRNIGQPVFIPGSMGT
                     ASWILLGNSKSLELSFGSTAHGAGRTMSRTAARRNYTTDSVRKNLESKGVYIKALSRE
                     GMVEETPEAYKDVDSVVEVSHSLAIATKVARLVPIGVIKG"
     gene            2079..2477
                     /locus_tag="VFX26_00520"
     CDS             2079..2477
                     /locus_tag="VFX26_00520"
                     /inference="COORDINATES: protein motif:HMM:NF014086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HEX5572987.1"
                     /translation="MSQEEDPELAIIKARKMKQLKEKAALSEKIREDEKKTNMTKMDD
                     KEILLKYLYDRGDEVLRLADSQFPVQTRIIVKRIVELIKSGEIDSLISGGELLAIFRS
                     VGLRIRVDTNIRIEDHGKYISFGEKLKEGI"
     gene            2587..3645
                     /locus_tag="VFX26_00525"
     CDS             2587..3645
                     /locus_tag="VFX26_00525"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HEX5572988.1"
                     /translation="MLPEKNHSAVFSGPKNFEIKYLPISSKDSNVLLKTLSCAVCGYD
                     VRVFKEGHKKVQPPIVLGHEICARTLNKLNLPNNQIIPEDSRVIVSPLIPCLNCHYCS
                     AGYFNSCNDLNEIGSSVNGGFADYINIPQNNILINGIIPITNNIRDDEASLIEPLSCC
                     LNAHLNFNIPINDEFVIIIGDGPIGLIHLQISKLYGAKTIVVGKIPSRLKEAKSIGAD
                     VVILNNDPKESIKTIWDYTYGKGGKLVIVATSNPEAIDLALKVAGKNSIVSLFAGISK
                     NKILRIDPNLLHYNQIALSGSFSSTPKIMKKAMDLVHEQKIDLKRLITHRFSLYEIDK
                     AFNLTEACNGLRSVINSF"
     gene            complement(3648..4448)
                     /gene="cobJ"
                     /locus_tag="VFX26_00530"
     CDS             complement(3648..4448)
                     /gene="cobJ"
                     /locus_tag="VFX26_00530"
                     /EC_number="2.1.1.131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030789 - precorrin-3B
                     C17-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-3B C(17)-methyltransferase"
                     /protein_id="HEX5572989.1"
                     /translation="MQNTRGRLYVVGVGPGHHDHMTFRAKQVIEESEIIVGYETYVSL
                     IEDLIQGKEVYRYPMTQEVDRANQAIEFAEKGRIVSLVSSGDPGIYGMVGLIYEILAD
                     KKWKHNDGIYVECVPGVSSLNSCSALVGSPLMTDFAVVSMSDLLVPWEIIVKRVEAAA
                     LGDYVTVIYNPASKKRIHQLRDTRDIFLKYRKPETPVAIVKGAFRETQKIVVTTLENL
                     LDYNDMLGMITTVIVGNSSTFNYNGLMINPRGYKSKYELVPETTKTVN"
BASE COUNT         1617 a          750 c          948 g         1302 t
ORIGIN      
        1 atccagaagg aacatgtgtc ccagcaaaag gtgaaggcgt agtatgcaca gaagtacaag
       61 gtacagaaac agctgaaggc gctgaaaacc aaacagaagc agatgcacaa gctgaaggtg
      121 aaaccggcga aaatggaaat ggtgatggtg caaatgcaaa tggaaatgaa ggaaatggaa
      181 atggtgaaag tgaagtaaca caaaacgcta caatgctcaa taccagaagc agtaacatga
      241 actgataacg gaacaatgat ggctggaaat atgaccggcg acatgggtgg aaattccacc
      301 atgggcagct agtcattaat ttcttctttt ttctcttttt tattataaaa taaaattcaa
      361 ggattaactt aatctgatcc atctagacag acttcggaac aatatctgaa attaattgca
      421 tgtgttcgaa aattggatgg aatcataagt catatactta aaataataat ccataatctg
      481 actctttgaa gacaaatatt attttgagcc aagtcaaaaa aaaatcgcag actttggtct
      541 aagttggatg ttttccacat agaaaattga aaagaatata atgactgtat attttaaatt
      601 ctaagaccca tgaaaaacct gataacgcga gtaggaaacc atgaaatagt aaatgaagga
      661 gatttcaaat atgtaattaa aaaagacgaa tctagaggga tgagggttcc agttacaatt
      721 tatgcagatg agaatctggt ttcaaaaatg gcgttagata gaacgattga tcaggctgca
      781 aatgttgcta cattaagggg tgttatgaaa cacgtggtgg tattgcccga tggacatgaa
      841 ggttatggtt ttccagtggg cggcgtcgca gggatggatt tggaggaagg tgtgataagt
      901 cctgggggag tcggatacga cattaactgt ggtgttagat taatacgaac taatttgagc
      961 gaacaagaag taagaccaaa gctcaaagat cttgtaaatg aattatttca tgcaattccg
     1021 tctggagtag gcagctcaag ttcaagaaaa gtcacaggat cagaactaga tgagctgctt
     1081 attgaagggg tgaagtggac tgttcaaaaa ggatatggtc gggaatctga tattgacgtg
     1141 tgtgaagaaa atggttgtat gaaaggtgcg gatcctacac aggtctcgga tcttgcccgg
     1201 aaaagaggag ggccccaatt aggcacgctt ggttcaggca atcattttct tgaggtacaa
     1261 aaagtagaca aaattttcga tgaaaaagca gcaggagcaa tgggaattga agaaggtcaa
     1321 gttactattt tgatacactg tggttccagg ggatttggac accaggtttg cagcgactat
     1381 ttgaaaattt ctgaaaaaaa aataagggaa tcaggaatga aaatcataga tagagagtta
     1441 gcatgcgttc ctaacaactc tgaagaaggc gagaactata ggaaagcaat gtattctgca
     1501 ttgaattttg catggtctaa cagacaaatg attacacact cgacaagaaa tacctttgaa
     1561 aaggtaatgg gaatgacaga aggcgatgct gatatgaatt tagtttatga tgtttcacat
     1621 aacatagcta aagtggaaag gcatactata gatggtgaag gaacaaggga tctagtgata
     1681 catagaaagg gagcgacaag ggcctttcca gcaggtgata atcatattcc agacaaatat
     1741 cgcaatattg gtcaaccagt ttttattcca ggatcaatgg gcacagcaag ttggatactc
     1801 ctcggaaatt caaaatcatt agaattaagt tttggatcta cagcccacgg tgccggaaga
     1861 acaatgtcaa gaactgctgc taggcgaaac tatacaacag atagcgtaag aaagaattta
     1921 gagtcaaaag gagtctacat aaaagcactt agcagagaag gaatggttga agagacaccg
     1981 gaggcataca aagacgtaga ttcagttgta gaggtatcac actctctagc tattgcaaca
     2041 aaggttgcac gtttagttcc aattggggtg attaaaggat gagtcaagaa gaagatccgg
     2101 aacttgcaat aattaaggcc cgaaaaatga aacaattgaa agagaaagcc gcattaagtg
     2161 aaaaaattag ggaagatgag aaaaaaacga acatgacaaa aatggacgat aaagaaatac
     2221 tcctaaaata cttgtatgat agaggtgacg aagtcctccg attggcggac tcacaatttc
     2281 cagttcagac aaggatcata gtgaagagaa ttgttgaatt gatcaaatcc ggtgaaatag
     2341 attcccttat atcaggaggc gaattgttgg caatattccg ttctgtggga ctacgtattc
     2401 gagttgatac taatattaga attgaagatc atggaaagta catctcattt ggagagaaat
     2461 taaaggaagg aatctgaata tcttatgata tttgaaatgg tgattttatt aaaaataata
     2521 ttgctaaatt ccagaactaa tcaaactaat ggatcagaac taatcatacc aatgaattga
     2581 aaaaaaatgt tacccgaaaa aaatcactca gcagttttca gtgggcctaa gaattttgaa
     2641 attaagtatt tgcctatatc tagtaaagat agtaatgtat tactaaagac tctgtcatgt
     2701 gcagtttgcg gatatgacgt tagagtgttt aaagaaggtc ataaaaaagt tcaacctcca
     2761 attgttttag gacatgagat atgtgcaagg accttgaata agctaaattt accaaataat
     2821 cagataatac ctgaggatag cagagttatt gtttctccac taattccatg tttaaattgt
     2881 cattattgca gcgcaggcta ttttaattct tgtaatgacc ttaacgaaat tggatcaagt
     2941 gtcaacggtg gatttgctga ctacataaat attcctcaaa ataatatact aattaatggt
     3001 atcattccta ttacaaataa catccgtgat gatgaagcat cactcataga acctctatct
     3061 tgctgtctga acgcacacct gaatttcaat attccaatta atgatgaatt tgtcataatt
     3121 atcggagatg gcccgattgg attaatccac cttcaaatat caaaactgta tggtgcgaag
     3181 actattgttg ttggcaaaat tccatcaaga ttaaaagagg caaaatcaat tggtgcagat
     3241 gttgtaattt tgaataatga tccgaaggaa tcaataaaaa caatatggga ctatacatat
     3301 gggaaagggg ggaaattggt tattgtggcc actagcaatc ctgaagcaat agacctggcc
     3361 ctaaaagttg caggaaaaaa ttcaattgtt agtttgttcg caggaatatc caagaataaa
     3421 attctgcgaa ttgatccaaa cttacttcat tataatcaaa tagctttaag tggaagcttt
     3481 agttctactc ccaagataat gaaaaaggcc atggatttgg tgcatgagca aaagattgat
     3541 ttaaagaggc tgattactca tagattttca ctatatgaaa ttgacaaagc atttaatcta
     3601 actgaggctt gcaacggatt aaggtcagtg ataaattcct tttaagctca atttacagtt
     3661 tttgtcgtct ctggtacaag ctcatatttg gatttgtatc ctctcggatt tatcatgagt
     3721 ccattgtaat taaaggttga cgagttgcct acaattacag ttgtaatcat ccctagcata
     3781 tcattgtaat ccagcaagtt ctctaatgtg gtaactacta ttttctgagt ctcgcggaat
     3841 gcacccttga caatcgcaac aggtgtttct ggttttcgat atttgagaaa aatgtctctc
     3901 gtatccctaa gctgatgaat cctctttttg ctagcagggt tgtagattac agttacataa
     3961 tcccctaatg cagcagcctc aactctcttg acaataattt cccatggcac aagtagatca
     4021 ctcatgctta ctactgcaaa atcagtcatc aaaggagagc caaccagtgc agaacaagag
     4081 tttaaagacg aaacgcctgg aacacattca acataaattc cgtcattatg tttccacttt
     4141 ttgtcagcaa gaatttcata aattagacct accatcccat aaattccagg atctcctgat
     4201 gaaaccaatg agactattct tcccttttca gcaaattcaa tagcttgatt ggctctatca
     4261 acttcttgag tcatgggata tcgataaact tctttaccct gaattagatc ttctattagt
     4321 gaaacatagg tttcatatcc tacgattatt tcgctctctt ctataacttg ttttgccctg
     4381 aaggtcatat gatcatgatg tcctggacca acgcctacca catacaatct tcccctagta
     4441 ttttgcatat ctacattaca gactgtagaa taatataata ttatttctaa ttttgatagt
     4501 tttaaaagtg atcttccata tttctatgca gctcatttat caacttgcat agaaaatctt
     4561 aaaatggaat caaaattatt gtcataatat ggcagatttg gatgaattca ctaaatt
//
LOCUS       DASUMD010000026         6305 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_117094, whole genome shotgun sequence.
ACCESSION   DASUMD010000026 DASUMD010000000
VERSION     DASUMD010000026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6305)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6305)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6305
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_117094"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..379)
                     /locus_tag="VFX26_00535"
     CDS             complement(<1..379)
                     /locus_tag="VFX26_00535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572990.1"
                     /translation="MRRKIIVLTLIILLLGSTLVLIANVNENNISYAAYVRALPESSG
                     QVLVDPSLKVELFFKDGLKGPATSMAFLAPDDILVLEKNTGKVQRIVNGSLQQNPLLQ
                     VKVGTEVELGMLGIAISKSQQGKT"
     gene            633..2063
                     /locus_tag="VFX26_00540"
     CDS             633..2063
                     /locus_tag="VFX26_00540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SufD family Fe-S cluster assembly protein"
                     /protein_id="HEX5572991.1"
                     /translation="MTTSIISLSSLDDKYVKEKSTTNSEPEWLMEIRNNAFSNYSSLP
                     HEVSPLYKKYSDANLLYPDRVYLSQGTKTYEADGDLKERIRELDKDTSILKIGSSIVH
                     SKVSDKLLKQGVVISDLENAIKDHGNIIKDRMHLSQLDYSEDKFLALELSCFDSGIFV
                     YIPKNIIIDEPIRIIDVLAPDGTSSITRNIVIAESNSKASIVQELYSNKESDDKIQQS
                     LFELLECYVGANAGLEFVTLQAMNEKNSVNFSNRKAFIEKDAKMSWYMGLFGGQLSRY
                     KIDNVMKGEGASAEDVEIIFGINDQSFDVTSNLIHYGPNTRGRVLSKSVMKDNSKSLF
                     KGMIKIDKNGKSAESFLAGHAILLDKGAKSDTIPGLEIETNEVRATHSASVAQIDENQ
                     IFYLMCRGLSNEEAKREIVSGFLEPLSRKMGPTIRAWVNYLMENKWLGKPLMLKTDEA
                     MEHILEVEKSRYRETEDIFEKHYKYR"
     gene            2089..2400
                     /locus_tag="VFX26_00545"
     CDS             2089..2400
                     /locus_tag="VFX26_00545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme iron oxygenase ferredoxin subunit"
                     /protein_id="HEX5572992.1"
                     /translation="MAWIKACELKVVNNGDMIDFDHEDKKILIAKINNKIYATDRICT
                     HAYADLSTGFLNEDENTVTCPLHMSRFNLESGVPENLPAEEPLKTYSTEVRDGWIHIL
                     I"
     gene            complement(2408..2941)
                     /locus_tag="VFX26_00550"
     CDS             complement(2408..2941)
                     /locus_tag="VFX26_00550"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: protein motif:HMM:TIGR02228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEX5572993.1"
                     /translation="MKKNTIYSLIAIAIIIGGGLLSIYTFFGSFNPFYVVVSGSMIPK
                     INIGDIVIIKNNSFDTSFNNLNVGDIIVFRAPEATTEDGKPKVIVHRISEIGTFFGKE
                     VVTTQGDANPYSIPGIDFPIFMENYVGKVVYVIPKIGTISMIITPPINYIIMAIIIGL
                     LIYSIRPKKIKHENETV"
     gene            3042..3455
                     /locus_tag="VFX26_00555"
     CDS             3042..3455
                     /locus_tag="VFX26_00555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572994.1"
                     /translation="MEKKEHNQLSREESIRNKEKCHNLLLLSQKIRYVGMINNFGRTV
                     AGQLRPGLIPLLNVEQAINEHFIEATRNQLRKMFDSTLGTTLYTLTVNEKVLTLNFPL
                     QSGGYYYITLDNDIGREELVKLIDLLAQKINTNSS"
     gene            complement(3464..3922)
                     /locus_tag="VFX26_00560"
     CDS             complement(3464..3922)
                     /locus_tag="VFX26_00560"
                     /inference="COORDINATES: protein motif:HMM:NF003269.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15e"
                     /protein_id="HEX5572995.1"
                     /translation="MHQYMAEMWTKMWKTNSEELKEKAMAWRKEPTIHRIERPSRLDR
                     AHKLGYKAKQGIIVVRTKVGRGGMRKQRPTSGRRPKHLGVVRIKQTDSMKLVAERRVN
                     EKYPNMEVIGSYFLYKDGKNIWYEILLVDPAHSSISRDVEFKKRLKAFAK"
     gene            complement(4024..4956)
                     /locus_tag="VFX26_00565"
     CDS             complement(4024..4956)
                     /locus_tag="VFX26_00565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HEX5572996.1"
                     /translation="MQVEGRVIICDAIDDVGITILKKAGLIVNYKPDIESNEILSAVR
                     ECDVIIVRSRTKITKAVIDAAPNVKIIARVGVGLDNIDTDHAESKGIKVLNAAEAAMN
                     AVSELVIGHMIALSRNIPKASNGIKNGKWLKKELVGGELRGKYLGIIGVGNIGRNVGR
                     IAKCLRMNLIGYDIFPINQEYVREVGMIKTDLMTLLENSDYVTCHVPLTEETRHLINS
                     ETLSHMKPTSFLINTSRGEIIDEHSLFMALSEKRIAGAALDVFEVEPPTNKELVNLPN
                     IICSPHIAAQTKEAQELASIVIAEKVIQTLLTNR"
     gene            complement(5217..5720)
                     /locus_tag="VFX26_00570"
     CDS             complement(5217..5720)
                     /locus_tag="VFX26_00570"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HEX5572997.1"
                     /translation="MKVKGAITSTAVVVLVVLATVMVTASTYGLTELVFAQAVPKFVI
                     NLTGSEEVPPVQTEATGVIEISLMPDSVGYSINATNIDGVTAGHVHLGKKGENGPVVV
                     TLFKYDSPMSEVSENGTITADKFEGPMAGKQLSDYLAAGANGSLYINIHTERNPNGEI
                     RGQSGAN"
BASE COUNT         2011 a         1136 c         1078 g         2080 t
ORIGIN      
        1 aagttttgcc ctgttgactc tttgatatcg ctattcccaa cattcccaat tctacttctg
       61 ttcccacttt tacctgaagc aatgggtttt gttgtagact tccgtttacg atcctctgga
      121 ctttaccagt atttttttcc aatacaagaa tatcatcggg ggcaagaaat gccatgctag
      181 ttgctggtcc cttgaggcca tccttaaaga atagttcaac tttcaaagaa gggtcaacta
      241 gtacctgtcc actactctct ggcaaggctc ttacgtaggc tgcgtaagaa atattgttct
      301 cattaacatt tgcaataaga accaaagttg aacctaaaag caaaattatt aacgtaagaa
      361 caatgatttt ccttctcatc agtagaaaaa attcttttca atcttttatc tgttttgaca
      421 gggagggttt gttaaaatca gtatttatta atttttctca tgataaaatt caatctagtg
      481 gattggcctc tcttcccaaa tactcgaagt atttcaacaa acatcaacca tagtatacac
      541 acccatgata tattcaaaaa ggccctcagg atcgaaagtt agaataaata gaaagataga
      601 taatatgttt attcatattt atcctttaat tcatgacaac tagcattatt tcactatcat
      661 cattggatga caagtatgta aaagaaaaga gtactacaaa ttcagaacca gaatggttga
      721 tggaaataag gaataatgca ttttcaaact attcttcttt accgcatgaa gtttcaccac
      781 tatacaaaaa atattctgat gctaatctcc tatatccaga tcgtgtttat ctttctcaag
      841 ggactaaaac ttacgaagca gatggagatc ttaaggagag aataagagag cttgataagg
      901 atacaagtat tctgaaaatt ggctcctcta tagttcactc caaggtttca gacaagctgc
      961 taaaacaagg cgtagtcatt tcagatcttg aaaatgcgat aaaggatcat ggaaatatta
     1021 ttaaagatag aatgcattta agtcaacttg actattctga agacaagttt cttgccttag
     1081 aattgtcttg ttttgactcg ggtatttttg tgtatatacc aaaaaatatc atcattgatg
     1141 aaccaataag aataatcgat gtgcttgcac cagatggaac atcatccata acaagaaata
     1201 ttgtaattgc agaatcaaat tcaaaagcaa gtatagtaca agaattatat agcaataaag
     1261 aatctgatga taaaattcag caatcactgt ttgaattatt agaatgctat gttggagcaa
     1321 acgcaggact ggaattcgta acacttcaag caatgaatga gaagaattca gttaattttt
     1381 caaatagaaa agcgttcatt gaaaaggatg caaagatgtc atggtatatg ggactttttg
     1441 gaggtcagct ttcaagatat aaaatcgaca atgtaatgaa gggggaagga gcaagcgctg
     1501 aagatgtaga aataattttt ggtattaatg accagtcatt tgatgtaaca tcaaatctga
     1561 ttcattatgg tccaaatacg aggggaagag tgttatcaaa atcagtaatg aaagacaatt
     1621 ccaaatctct ttttaaggga atgataaaaa ttgataaaaa tggaaaatct gccgaatcat
     1681 ttcttgccgg gcatgctatt ctgttggata aaggcgcaaa atcagataca attcctggac
     1741 tggaaattga gacaaatgaa gttagggcca ctcattcagc atctgttgcg cagatagatg
     1801 aaaatcaaat tttctatctt atgtgtaggg gacttagtaa cgaagaagca aaaagagaaa
     1861 ttgtaagtgg gttcttagaa ccattatctc gtaaaatggg ccctactata agagcgtggg
     1921 tgaattattt gatggaaaat aaatggcttg gaaaaccatt aatgctcaaa actgatgaag
     1981 caatggaaca cattcttgaa gtcgaaaaat caagatacag agaaactgag gatatattcg
     2041 aaaaacatta taagtataga tagacgactc tgctaactat gatttgtcat ggcatggatc
     2101 aaggcatgtg aactaaaagt ggtgaataac ggtgatatga tagactttga tcatgaggat
     2161 aaaaaaattc taatagcaaa gataaacaat aagatttatg caactgatag gatatgcact
     2221 cacgcatacg ctgatctttc aacaggattt ttaaatgaag atgaaaatac tgttacttgc
     2281 ccactacata tgtcaagatt taatctagag agcggggtcc ctgagaattt acctgctgaa
     2341 gaacctctca aaacttatag cacagaagtt agagatggtt ggattcatat tctaatctga
     2401 atctatctta cacagtttca ttctcgtgtt ttattttctt tggtcgaatg gaataaatta
     2461 acaatccaat tattattgcc ataattatgt agtttatggg tggggttata atcattgaaa
     2521 ttgttcctat ctttgggatt acatatacta cttttccaac atagttttcc ataaatattg
     2581 gaaagtctat accaggtatg gaatacggat ttgcatctcc ttgtgtcgtc acaacttcct
     2641 ttccaaaaaa agttccgatt tcagatatcc tatgtacaat taccttgggt tttccatctt
     2701 ctgttgttgc ttccggagct ctaaaaacaa taatgtcccc aacattaaga ttattaaatg
     2761 aagtatcaaa agaattattc ttaataatga caatatcgcc aatgtttatc tttggaatca
     2821 tactcccact tactactacg taaaagggat tgaaagatcc aaaaaatgtg tatatagaaa
     2881 gtagacctcc tccaataata atcgcaatcg ctatcaaact atatatcgtg ttttttttca
     2941 ttttagattt attcttctaa tctatcggga tgaccattaa aacttattga tccgttttaa
     3001 cgacattaaa aaatatatct agcaaaattt ctttacttat tatggaaaaa aaagagcaca
     3061 atcaactttc aagagaagag tcaatcagga acaaagaaaa atgtcataat ttactcttat
     3121 tatctcaaaa aatccgttat gttggaatga taaacaattt tggtaggact gttgcaggac
     3181 agttacgccc gggcctcata ccactactta atgttgaaca agcaatcaat gaacatttca
     3241 ttgaggcgac tcgcaaccag cttagaaaaa tgtttgattc aacattaggt accacattgt
     3301 acacacttac cgtaaatgag aaggtattaa ctttgaactt tccgttgcaa tcaggaggat
     3361 attattacat aactctggat aatgacattg ggagggaaga actagtaaaa ttgatagatt
     3421 tgctggctca aaaaattaat actaattcga gttagcatat agcttatttt gcaaaagcct
     3481 ttaacctctt tttaaattcg acgtctcttg aaattgatga atgagcagga tctactaaca
     3541 agatttcata ccaaatgttt ttaccgtctt tgtacaggaa ataagaacca ataacttcca
     3601 tattaggata cttttcattt actcttcttt cagcaactag tttcatacta tctgtttgtt
     3661 tgattctaac tacgcccagg tgttttggtc ttcttccaga tgtgggacgt tgctttctca
     3721 ttccgcctct tccaaccttt gtgcgaacta caattatgcc ctgttttgcc ttgtatccca
     3781 atttatgggc cctatccaat ctactgggtc tttcaattct gtgtatggtt ggttcctttc
     3841 tccatgccat ggctttctcc tttagttctt ctgagttcgt tttccacatt tttgtccaca
     3901 tttcagccat atactgatgc atattacaga taactccaga taagacctta atatctgtat
     3961 tttgttaacc ggaagaacaa gagaacaaga gctacaaact gtgagacttt gatttgatat
     4021 ttttcatcta ttggtgagta aggtctgaat tactttttct gctatcacaa ttgaagcaag
     4081 ttcctgtgcc tctttagttt gagcagcaat atgagggctg caaatgatat ttgggaggtt
     4141 tactagctcc ttattggtgg gaggttccac ttcgaaaaca tcaagcgctg ctccagcgat
     4201 tcttttctca gataacgcca taaataagga atgttcgtct attatttctc cccttgatgt
     4261 attaatcagg aaagaagttg gtttcatatg cgatagtgtc tcagaattaa taagatgtct
     4321 cgtttcttcc gtcaatggta cgtgacatgt tacatagtcc gaattctcca gtagtgtcat
     4381 taaatctgtt tttatcatac caacttccct gacatattct tgatttatcg gaaagatatc
     4441 atatcctatc aggttcatac gaaggcattt tgcaattcgc cctacatttc tacctatatt
     4501 tcctactcct attattccca aatattttcc tcttagttcg ccaccaacaa gttctttttt
     4561 taaccattta ccattcttga ttccattact tgccttggga atatttctgg acaatgctat
     4621 catatggcca attaccagtt ctgatactgc gttcattgca gcttctgcag cattcaaaac
     4681 cttaattcct ttagattcag catgatctgt atctatatta tccaacccga ctcctactct
     4741 tgcaataatt ttgacattgg gagctgcatc aattaccgct tttgttattt ttgttctgct
     4801 tctaactata atcacatcgc actctctaac agcggatagt atttcgtttg attcaatatc
     4861 gggtttgtaa ttgactatta agccggcttt tttcagaatg gttatgccta cgtcatctat
     4921 agcatcgcag ataattactc tcccttcaac ctgcatgaga tatgcaaatt acaggtctta
     4981 taatttggtt gctaaaggaa tttacttgta actaggatta gaaattctaa ttaaaaaatt
     5041 aaaatatgat gtaggtgacg gtgataaact tgtcgaatgg tattgtccat tatattttga
     5101 aagatggtta gaataaggaa agacggtgga cgcaagaaag ttattgataa attaaattaa
     5161 aagaaagcat tgaacaaaaa agatgactat tatctggtat cgtttttatt tttggactaa
     5221 ttagctccac tttgtccacg aatttctcca ttaggatttc gttctgtatg aatattgata
     5281 tataacgaac cattagcacc tgcagctaga tagtcagata attgcttgcc agccattggt
     5341 ccttcaaatt tatcagccgt aattgtaccg ttttccgata cttcactcat aggagaatca
     5401 tatttgaaca atgtaaccac tacgggtcca ttttcgcctt ttttgccaag atgtacatgt
     5461 cctgctgtaa caccgtctat attagtagcg tttatactat atcctaccga atcgggcatt
     5521 aggctgatct cgattacacc tgttgcctct gtttgaaccg gcggtacttc ttcactgcct
     5581 gttaggttta tcacaaattt tggaactgct tgtgcgaaca ccagttcagt caacccatat
     5641 gttgatgctg ttaccattac tgttgctaat accactaaga ctaccactgc agtactagta
     5701 attgcacctt tcactttcat ggtcataaga aaatgtatgt gattcataat atttaaagtt
     5761 aggaatagat acaatagcct aagaaccaat atacagttaa accaatgtgg taagaccatc
     5821 tagtcgaatc gatactctca gacgtttgtt acttctaact tgacaaaaat ccttcttccc
     5881 atcagaccta ttaaaagaat gaatattttg tatgattcta atcattattc tcggttctat
     5941 gaataacggc caaggcttcc tgagttaata tgattttggg tcccgtgaca tttttatcat
     6001 tcgaatctga gttagttgat tgactgtgtt atctgtttca gaaacgtcca ggcccaactt
     6061 ttcgcctact tcatatcgat tgacaattcg aaattctccg ccagtaattt caaaatacga
     6121 ctttgacgaa gatgagttta taggagattc tgttcctgtt ttgaataata gcgatctcgt
     6181 tgaccagtac cgctaacttg acagcaatat atttcgggta agaactaaaa agaattgaat
     6241 taccttttcg ggcaaattat ttttccattc aacgaataac aatcaggtgg caagtagttt
     6301 gtatt
//
LOCUS       DASUMD010000027         6355 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1444224, whole genome shotgun sequence.
ACCESSION   DASUMD010000027 DASUMD010000000
VERSION     DASUMD010000027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6355)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6355)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6355
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1444224"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..244
                     /locus_tag="VFX26_00575"
     CDS             <1..244
                     /locus_tag="VFX26_00575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5572998.1"
                     /translation="ELTNSIIINPNYESLTVNSSTEFNNATIDDSQFIDYITQYTRNV
                     PQKIKDKKKLRRELAKKGVSEENIEDLLTISKLPEE"
     gene            complement(341..958)
                     /locus_tag="VFX26_00580"
     CDS             complement(341..958)
                     /locus_tag="VFX26_00580"
                     /inference="COORDINATES: protein motif:HMM:NF039195.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PsbP-related protein"
                     /protein_id="HEX5572999.1"
                     /translation="MASIFDDINQSRISIALSVLSVFSIFLIIDYLDHHLASGSFHEN
                     PIIPTSSESEFLTYDDLITGFSIKYPHDWDRAQHIDKSVTFHAPKESNSDTNPADLGI
                     MVIQVGSNTTLASITQNQLSTLKKLYPDFQVQESVETIFLGHPAHMIIFTATDNTQNV
                     RKAMQIWFKEDAKAFLVTYKSDNERFSKYLPTIDRMLNTFYTYKK"
     gene            complement(1159..1671)
                     /locus_tag="VFX26_00585"
     CDS             complement(1159..1671)
                     /locus_tag="VFX26_00585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573000.1"
                     /translation="MKKNIKNGTNSEEKVSESVTDEDTNIQNEGSDPEIPTNDYNTKS
                     INSEKTIRKSNSNVKIEDYDLIVNSLKDATNSFKDVILSIGKKAQEIRDKAEETFTVG
                     AKRDARDIQALGGYVENVIKGFEDTMTEIKKRNYRDEEKLLKGYKKLLEEQIHLINAR
                     MQLVKRLKSK"
     gene            1867..2178
                     /locus_tag="VFX26_00590"
     CDS             1867..2178
                     /locus_tag="VFX26_00590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HEX5573001.1"
                     /translation="MSEVQQNTQPQRDGPRDSIYIGKKPLMAYVTSTLIQLANQPSVT
                     IKARGLSIGRAVDVSQIILKRMENAGYTIGDVRIGSETLQAEDGRTRNVSTIEIEVKK
                     A"
     gene            2225..2941
                     /locus_tag="VFX26_00595"
     CDS             2225..2941
                     /locus_tag="VFX26_00595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573002.1"
                     /translation="MEKIAALYLAHLNPVTNSHEKIISQLSKGYHVYVFPVVFVKKGR
                     EVNTRTFPFSYELRKKMLLSLFNDHDNIEILPNYRFISPFIKYLPPILSPYSWSLRRG
                     ILRDVVEDRFISYTGDKAERIALRFYNLHPIKAKRLEISSSNVKELLYREALEYLRKD
                     EFTRNLKNGLDHSIHNHQKKQNGDQVSESSKESWQKMVPKNVVNIIMENWKIVEKYAH
                     SADKTIKIFGMKIPEEGLLN"
     gene            2998..3915
                     /locus_tag="VFX26_00600"
     CDS             2998..3915
                     /locus_tag="VFX26_00600"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transaminase"
                     /protein_id="HEX5573003.1"
                     /translation="MKDKGVDFVWFDGQYLKWEEAKVPIFVHALHYGTAVFEGIRAYR
                     SDDNLSIFRLKEHMDRLRKSANVYSFTTKFSVDELCKAAVDLIRKNGIRESCYIRPLT
                     FVGMHGIDLNVTKNSPTHTTIIIFPFAKYFKGDGISACISSWRRIDDESIPPMAKASG
                     NYLNSVLATQECRRNGYDESILLDRNGTVSEASGENIFVVRNGKLHTPQLSDSILEGI
                     TRDTAITIARELGYDVVERPISRTELYLADEIFLTGTAAEIIAITKIDGNIIGNGREG
                     TMTKSIRENYERIVIGKSEKFMGWLTPTW"
     gene            3894..4877
                     /locus_tag="VFX26_00605"
     CDS             3894..4877
                     /locus_tag="VFX26_00605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEX5573004.1"
                     /translation="MANANLVRKKNSGSKIGVIGVGGWGKNHVRVLYNMGVLGAVCDL
                     STDRAKEIAEKYNTKFYSSIKDLFSNERGLDACLVCTPTQSHLSVVKEVIQNGCHVFV
                     EKPLSFSSRDCEEMTELAGKAKVNLTCGYVERFNPAVQDLKNIIQQQTYGDLLMMEFH
                     RENRMPLHIKDVGVIYDTSVHDIDTAMFLFGKGPKMVFARAGKKFHLFEDFATIMLGF
                     EDQKVAIIASNWVTPRKVRTFSAVCTEGTVNGDFITQEIRIDHGDETIIPRRQQFQEP
                     LVLELQSFVEVIEGRRKQPVVTSVEATNVTKVAEAALLSSETGSPIYLELR"
     gene            4921..5196
                     /locus_tag="VFX26_00610"
     CDS             4921..5196
                     /locus_tag="VFX26_00610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trm112 family protein"
                     /protein_id="HEX5573005.1"
                     /translation="MLDILACPIDKYYPLELIEIDIAEDKIINENVIKEGVLFCSQCS
                     RFYPIIEEIPVMLPDELRDKEKDIQFLQKWQEKIPSKIIKNGNPWHL"
     gene            5280..5765
                     /locus_tag="VFX26_00615"
     CDS             5280..5765
                     /locus_tag="VFX26_00615"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HEX5573006.1"
                     /translation="MNSNNLINFISETAKIGKNVKIWHFSYIGNNSEIGDNVSIGSLV
                     HIDYNVKIGDNTRIEGSVYIPPLTTIGKNVFIGPCATFTNDPYPMSPKMTGVVVEDGA
                     IVGGRAVFKAGVTVGKNSVIAMGAVVTKDVPPNVVVMGHPATVRYSREEYDEKKKNWN
                     S"
BASE COUNT         2114 a         1010 c         1204 g         2027 t
ORIGIN      
        1 tgaactcaca aactcaatta taataaatcc taactatgaa tcgttaaccg taaattccag
       61 tacagaattt aataatgcta caatcgatga ttcccaattt attgattata taacccagta
      121 tactagaaat gtgcctcaga agattaagga taagaagaaa ctgagaagag agttggctaa
      181 aaaaggcgtt agcgaagaaa atatcgaaga cctattgact atttcaaaac ttcctgaaga
      241 atgagatggg taatcgttaa attcatctta agtggttcgt ggtggctatg tatggtcaaa
      301 tttgcaggac actctcgcta tacactcatg actcgtttgg ctatttctta tatgtataaa
      361 atgtatttaa cattctatca atggtcggta gatattttga aaatctctca ttatctgatt
      421 tgtaagtcac caaaaatgcc ttagcgtctt ccttaaacca gatctgcatt gcctttcgca
      481 cattttgtgt gttatcagtt gccgtgaaga ttatcatatg cgctgggtgt cctagaaaaa
      541 ttgtttcaac agattcctgc acttgaaagt ctggataaag ttttttgagg gtactaagtt
      601 ggttctgtgt tatcgaagcc agtgttgtat ttgatcctac ttgtattacc attataccaa
      661 gatctgccgg atttgtatca gaattactct ctttcggagc atgaaatgta actgatttgt
      721 caatatgttg ggccctatcc caatcatgag ggtattttat actaaatcca gtaataagat
      781 catcatatgt aagaaattct gattcagagg acgtaggaat tatcggattt tcatgaaatg
      841 agccggatgc caggtggtga tctagatagt caataatcag aaagattgag aaaactgaaa
      901 gaactgataa tgcaattgat attctgcttt gattaatatc atcaaatatt gatgccatct
      961 attttctagt attgatcatg tacagactct taaatattct tagaaagatt ggttatcata
     1021 ttatcagcaa aatcaaaaat atgaaatgaa tgtatccttt gggtaaagat tgattctaga
     1081 tgacggtaaa ttgtggatga gtatcttggt ctcaatttgg gtgtaaattt cttaaaatat
     1141 tctattagta ccgttaggtc attttgattt aagtctcttt acaagttgca ttctcgcatt
     1201 aattagatga atctgctctt caagtaattt cttgtaaccc ttcaagagct tttcttcatc
     1261 acggtaattt ctctttttaa tttccgtcat agtatcttca aaacccttga ttacattttc
     1321 tacataacca ccaagagctt ggatatccct tgcatctctc tttgctccca cggtaaatgt
     1381 ttcttcagcc ttgtctctga tttcttgagc tttcttgcca atggaaagaa tcacatcttt
     1441 gaatgaatta gtagcatcct ttagactatt tactatcaag tcataatctt cgatcttgac
     1501 gtttgaattt gattttctaa ttgttttttc tgaatttatc gatttagtat tgtagtcgtt
     1561 agttggaatt tcagggtctg acccttcatt ttgaatatta gtatcctcat ccgtaaccga
     1621 ttcactcact ttctcttctg agttagttcc atttttgatg tttttcttca ttgagtaata
     1681 gtacaaatgg taaaccagat atataaccgt gagattgggg catttcaatc ctaatttctt
     1741 gtattatagt tacaagtttt ttctaaaatt gaagtgtggt gaacccgtca caatattagg
     1801 ttgatatttt ttttaatcag ataatgtgtt ttagatttaa attatccttt agactaacgg
     1861 ttttttatgt ctgaagtaca acagaataca caaccacaaa gagatggacc ccgcgattct
     1921 atatacatag gcaagaaacc actgatggca tatgtaacat ccacacttat tcaactagca
     1981 aatcaaccat cagttactat aaaagcaaga ggcttaagta ttggaagagc agtcgatgtt
     2041 tcacaaataa ttctaaagag aatggaaaat gcagggtata caataggcga tgttagaatt
     2101 gggtcagaaa cactccaagc agaagatggc agaacaagga atgtctctac aatagaaatt
     2161 gaagtaaaga aagcatagga gctttctcct tactttttgt tattatatct atcaagtttg
     2221 ataattggaa aaaattgcag cgctttatct tgcccatcta aatccagtta caaattccca
     2281 tgaaaaaata atttctcaac tatctaaagg ttaccatgtg tatgtttttc cagtagtttt
     2341 tgtaaaaaaa ggtagagaag taaatacaag aacatttccg ttttcatatg aattgagaaa
     2401 gaagatgcta ctaagcttgt ttaatgacca tgacaatata gaaattttgc ctaattatag
     2461 gttcatatct ccattcatca aatatcttcc accaattctc tccccatatt catggtcatt
     2521 gcgaagagga atcttgcgtg atgtggtgga agaccgattt atttcgtata ctggcgacaa
     2581 ggctgagagg atagctttgc ggttctataa tcttcatcct ataaaggcaa aaaggctcga
     2641 aatatcttca tcaaatgtaa aagaattatt gtacagagaa gcactagaat acctaagaaa
     2701 ggatgagttt acccgaaatc tgaaaaatgg tttggatcac tcaattcata atcaccagaa
     2761 gaagcagaac ggagatcaag ttagtgaatc ctccaaagaa tcatggcaaa aaatggtacc
     2821 aaagaacgtt gtaaatataa ttatggagaa ctggaaaatt gtcgaaaaat atgcccattc
     2881 tgcagacaaa actatcaaaa tttttggaat gaagatccct gaagaaggtc ttctcaacta
     2941 gaagtcctat atacaaagat ttgaatactt ttattatcca attattgact tgccattatg
     3001 aaggataagg gtgtagactt tgtttggttc gatggacaat atctcaaatg ggaagaggcc
     3061 aaggttccaa tctttgtaca tgcccttcac tatggaacgg cggtctttga aggaatccgt
     3121 gcatatcgat ctgatgacaa tttatccata ttcagactca aggagcatat ggatagactc
     3181 cgtaaatcag ctaatgtcta ttcctttaca actaaatttt ctgttgacga actttgcaaa
     3241 gctgctgtag atttaattcg aaaaaatggt ataagagaat cgtgttacat aaggcctctt
     3301 acatttgttg gtatgcatgg aatagatcta aatgtaacca agaattctcc gacacataca
     3361 acaatcataa ttttcccatt tgcaaaatat tttaagggtg atgggatctc tgcatgcatt
     3421 tcttcttgga gaagaattga tgatgagtcc atacctccga tggcaaaggc ttctggcaat
     3481 tatcttaatt ctgtattagc tactcaagaa tgtagacgaa atggatatga tgaatccata
     3541 cttcttgata ggaatggaac tgtcagcgaa gcatcaggag aaaatatttt tgtagttaga
     3601 aatggaaaac ttcacacacc ccagttatca gattcaatat tagaaggaat tacaagagat
     3661 actgccataa caattgcaag ggagttgggg tacgatgttg ttgaacgtcc catctcgagg
     3721 acagaattgt atcttgctga cgagatattt ctaacgggaa ctgccgctga aataattgca
     3781 attacaaaga tcgatggaaa tataattgga aatggaagag agggaaccat gacaaaaagt
     3841 ataagagaaa attacgaaag aattgtgatt gggaaatctg agaaatttat gggatggcta
     3901 acgccaactt ggtaagaaaa aagaatagtg gttcaaaaat tggtgtaatt ggagtaggcg
     3961 gttggggaaa gaatcacgtt agggttctct acaacatggg agtccttgga gctgtctgtg
     4021 atttgtccac agatcgtgca aaagaaatag cagaaaaata caatacaaaa ttttattctt
     4081 ctataaagga tcttttttct aacgaacgag gattggatgc ctgtctagta tgtacaccta
     4141 ctcaatcaca tctgtcagta gtaaaggagg taattcaaaa tggttgccat gtatttgtgg
     4201 aaaagcctct ttcattttca tcaagggatt gtgaagagat gactgaattg gccggcaaag
     4261 ccaaggtaaa cttgacatgc ggatatgtag aaagatttaa tcctgctgtt caggatttga
     4321 agaatataat tcaacaacag acatacggtg atcttttgat gatggagttc cacagggaaa
     4381 acagaatgcc tctacatatc aaggatgtgg gcgtaattta tgatacctca gttcacgaca
     4441 ttgatactgc aatgtttctt ttcggcaagg gtccaaaaat ggtctttgct agagcgggaa
     4501 aaaaatttca tttgttcgag gatttcgcaa caataatgct gggatttgaa gatcaaaagg
     4561 ttgcgataat tgcatcgaat tgggtgactc caaggaaggt cagaacattc tctgccgtat
     4621 gtacggaagg tactgtaaat ggtgatttta ttacgcaaga gataagaatt gatcatggtg
     4681 acgaaaccat tattcccaga agacaacagt ttcaggaacc tcttgtgtta gaattacaga
     4741 gttttgttga agtaatagaa ggtaggagga aacagccagt tgttacctct gtggaagcca
     4801 caaatgtgac taaagtagcc gaagcagcac ttctatcgag tgaaacaggt tcaccaattt
     4861 atttggaatt gagatgaaat aataagatgt gttaaccatg aagtatccat gagacgatct
     4921 atgctagaca tcctggcatg tcctatagat aagtactatc cattggaatt gattgaaatt
     4981 gatattgctg aagataaaat cattaatgaa aatgtgataa aagagggagt acttttttgt
     5041 tcgcagtgtt caaggtttta tccaattatt gaagaaattc ctgttatgtt gccagatgag
     5101 ctacgtgata aagaaaaaga tattcagttt ttacagaaat ggcaggaaaa aattcccagc
     5161 aaaatcatta aaaatggaaa tccttggcac ttgtaaaggg atttgagaac cgtgaaggaa
     5221 ctataaattg gatatagata tagcatgata ttagatatag gagaaggtaa aatatggaaa
     5281 tgaatagtaa taatttgata aactttattt cagaaactgc gaaaatagga aagaacgtaa
     5341 agatttggca cttcagctac attggtaaca atagtgagat aggggacaat gtttctattg
     5401 gttcacttgt gcacatagat tataatgtaa aaataggaga caatacaaga attgagggat
     5461 ctgtatatat tccgccgtta actaccattg gaaaaaatgt attcatagga ccttgcgcga
     5521 catttacaaa tgatccttat ccaatgagtc caaaaatgac aggagttgta gtagaggatg
     5581 gtgcgatagt tggagggaga gctgtattta aggccggggt aacggttgga aaaaacagtg
     5641 taattgcaat gggagccgtt gtaacaaagg atgtgccccc taatgttgtt gtaatgggcc
     5701 acccggcaac ggtaagatat tcaagagagg aatatgatga aaagaagaag aattggaatt
     5761 cctagatcac aattcattta tgtaatcaaa aataataatt cttgattcat atcattcgat
     5821 attcatgact tctgtccaac aatcattgca gaaatcctca tcatttacaa tttttcgttg
     5881 aagattcaca tctttttcgt catatatttt gagacacata acacaaatag acattatata
     5941 atatacgtgc ttttgacata ttaacattat gtaaaaattt tatgatattt gtttgttttc
     6001 taacttatta ttcatataat aggaaattgg caattttttg cttttaattt atattaaaag
     6061 ctccataaaa tgttattaat aacctggata aaaatattta taaagaaatt acagatgttg
     6121 cctttaattt ttacctactt tttcggtact tctgctagaa accttattgt gaaacgatct
     6181 agatttcaac tctctttctt ccatcatcgg ttatgtaaat tttagtgcgg cctattttct
     6241 ttatacaacc ctcagaaatc aattcgtcta caagattatc catttgcaca tctattattc
     6301 caatatcttt tccaatctca tctctatcga taccttcaat tccattatct acggt
//
LOCUS       DASUMD010000028        10530 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1112191, whole genome shotgun sequence.
ACCESSION   DASUMD010000028 DASUMD010000000
VERSION     DASUMD010000028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 10530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10530
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1112191"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            130..1998
                     /locus_tag="VFX26_00620"
     CDS             130..1998
                     /locus_tag="VFX26_00620"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018039278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HEX5573007.1"
                     /translation="MLHADFIEYQPISKEIQAAEDIPSKSSNKIDEVIVALVAVEKDD
                     DESIIDEVGNELKTYGEMIKCDSLLIYPYAHLSSDLATHTVAQSILNSIEKKTRDLFK
                     IVNRAPFGWTKSFNIKIKGHPLAEHAKTIQKKTDGKTNTESTAESIALKSEEVLNSSW
                     YVLVPEGNLVPINEYTFEKDSAFRKLADYELSKKRTVVEVPPHVKLMKRLAIADYEPS
                     SDGGNMRYYPKGRLMKSLIETYVTKMIHEYGGIEVETPVMYDSNHPSIHSYFNRFPAR
                     QYNIQSDNKQLFLRFAACFGQFLMAKDFQISYKQLPLKLYELTRYSFRREKSGELVGL
                     RRLRAFSMPDCHAFCRDMDQAKEEFVKRFELSLRVIEGLGLSSNDDVDMVIRFTSDFY
                     EQNKEFIKTFAARLEKPILVEMWKERFFYFIVKWEFNFIDSLGKAAALSTDQIDVENG
                     ERYKIEFVDSDGEKKYPIILHNSPSGAIERVIFALLEKTDKDNNTGKVPALPLWLSHT
                     QVRVIPVASKHLEFSEKISDELGKNNIRADIDERELSVAKKIREAESEWIHFILVIGD
                     KEVDGNELVVRERVAKSQYGMALDSLIKKIKLETSDKPYLPLNLPTYLSKQPLIMV"
     gene            2086..2295
                     /locus_tag="VFX26_00625"
     CDS             2086..2295
                     /locus_tag="VFX26_00625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573008.1"
                     /translation="MGRVEKGVNCSVSGCSESAERSISGSKASMAADLEVNTSNKRVY
                     LCRQHYKEWKKATKEDRETERARWG"
     gene            complement(2352..3302)
                     /gene="speB"
                     /locus_tag="VFX26_00630"
     CDS             complement(2352..3302)
                     /gene="speB"
                     /locus_tag="VFX26_00630"
                     /EC_number="3.5.3.11"
                     /inference="COORDINATES: protein motif:HMM:TIGR01230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008783 - agmatinase activity [Evidence
                     IEA];
                     GO_process: GO:0008295 - spermidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="agmatinase"
                     /protein_id="HEX5573009.1"
                     /translation="MTKILDLLDSFFITPERTKAGCSFGDIDTKTSFNESNIVFFGIP
                     LELTTSFGKGTSRGPEAIRSASGRQIETYVYDEKKDIKEIAKIFDLGDIKLPQYHNGK
                     VDSIFSFLNEKVTPLVKELSRTKKKPFVLGGEHTLSYFCFKGLSETHPLLIHFDAHRD
                     LKPEYEGLKLCHTTPFYRLIEEGFIQGENILQVGIRQADQEENSIAEKNGIVTFDPWE
                     IKSNIERVTEYITKVTNNRNIYISFDIDVYDLSYVPCTGTPEPFGLDPFEILKIIKSI
                     NDSANLVGMDLVEVSLKNDDYREGTLATQTLLRIIPRKYV"
     gene            complement(3358..6063)
                     /locus_tag="VFX26_00635"
     CDS             complement(3358..6063)
                     /locus_tag="VFX26_00635"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF004417.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed DNA polymerase I"
                     /protein_id="HEX5573010.1"
                     /translation="MDQSSLLQNDKDKQHLSYWKELPENTRVMLISAIYSGENQKVQL
                     KFYDPNLHVIYFWQDKTDHKPYCYTKLEYQKRAEEIAAIEKKFELKIIPKMDLMSDKE
                     IQTIKIIAPDPLSIGGKGGIREKLNVWEANIKYHENYLYDTRLIPGSYYKREGDEIIE
                     DPYKMSDIVYNALKNFLWDKILESKEARNDKYREYVREWADLLNQPIPEMKRIALDIE
                     VDSEEGRMPVPKEHNRKITAVGLVSNDGFRKVLLLEQDKNPNDGTALIPEAEMCKTEK
                     ELLEKTFDTIWSYSVLVTFNGDDFDLPYLYERSQDPAIDPINHTIIPKEEIPLLVKRD
                     SFIKKGIQAEPVQLKHGVHIDLFRTFQNRSIQIYAFSHKYSEYRLNAISEALLNDSKI
                     EFDGNISDLPIQKLAQYCLKDTELTFRLTSFNDNLLLKLLFAIARISRLSIEDLSRVG
                     VNQWIRGMLFYEHRKINALIPHSEELRYKGQASSEAIIKEKKYRGGLVVEPTPGIHFN
                     VSVVDFASLYPSIIKVHNLSYETVNCPHDSCSQDPDQKITDTSYWTCKEKKGITSLLI
                     GSLRDLRVNYYKQLSKDKTISPEERQLYTVVSQAIKVILNASYGVMGAEIFPLYCLPV
                     ADATAAIGRNIISRTIEKCRESGIAVVYGDTDSLFLRDPSEGNVEEISKWAKTNQGVD
                     LELDKEYRYVVFNNLKKNYIGVLKDGTVDVKGLTGKKSHTPAFIRKTFYSMLDILGKV
                     NTEKDFDTAREKIKDIVKESAKKLESNEYPLEELSFNVMINKSPEKYGKKTSENTRIT
                     SIHGQDSTTNSIKGIPQHIKAARLFSDNGRQIKAGDIISYVKTKTAEGVKPVELSNHK
                     EIDTEKYLEAMESTFDQLLTALDVNFKSIIGKPRQSNLDELFWSN"
     gene            complement(6172..7128)
                     /locus_tag="VFX26_00640"
     CDS             complement(6172..7128)
                     /locus_tag="VFX26_00640"
                     /inference="COORDINATES: protein motif:HMM:NF013097.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HEX5573011.1"
                     /translation="MSTPGMSIAEHFDELRIRLVRIVICIAIITIISMSFGIKTAIVP
                     ITPPFPSQDASQQQNLTLYYLSPDPFNNVALQLTSFMKDTLLPPEVKLIQTAPGQVFF
                     AQIHISLLIGLICSLPIVIREIFGFISPAFYQTKSDGEYDNRDVRNTNTEDDAAQGNA
                     QQTRKEDGKKSKRSFSKIDLFKIISPIFLLFIIGVVFSYVLVIPLTLDFLYKYGESIG
                     AETLLTVNDFIAFVLQFILAFGIAFQLPVLMYVLSLSGLTDSKFWQRNFRYAVIIITI
                     FGAIITPDGTGVTMWFIALPMIGLYAVGIIAIRRKEGNAITV"
     gene            7310..7627
                     /locus_tag="VFX26_00645"
     CDS             7310..7627
                     /locus_tag="VFX26_00645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573012.1"
                     /translation="MQYHKASFIGHERSKKAQLKLFDYTGYAMLTYTVKQDGSGFAPV
                     GEEMLVGKMERESEAMLFLCDNDGYAKAQSKPLPKEKAIEAYKKMLDDGIQEFKGQIK
                     TVT"
     gene            complement(7701..8408)
                     /gene="pyrH"
                     /locus_tag="VFX26_00650"
     CDS             complement(7701..8408)
                     /gene="pyrH"
                     /locus_tag="VFX26_00650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HEX5573013.1"
                     /translation="MSVSKEVSKQKKILVIKLSGSVFNFKTTSKSLKEYAQVLLDIHT
                     KVQPVVVSGGGIIARHYVNLARSLGSDESSLDEMGIEISRLNAMLLSAALGDSVYPVI
                     PSNLEEITIACQSGKIIVSGGLHPGQSTNATAALICEKIKADRFLNATDVDGIYDSDP
                     KKNAKAKMFKEITIKKCLDLLNNESTQAGNYELMDIVAMKVIERSKIPTYVIKSDPNV
                     IRNIIMKNRQSGTKITV"
     gene            complement(8408..9670)
                     /locus_tag="VFX26_00655"
     CDS             complement(8408..9670)
                     /locus_tag="VFX26_00655"
                     /inference="COORDINATES: protein motif:HMM:NF039904.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEX5573014.1"
                     /translation="MALNSLVDMKFVGEIADPIHKFIRFTDLEKKIIDSVVFQRLRRI
                     KQLAGAHLVYPAAQHSRFEHSLGTMHVAGLAGEHLFSIGAMEKESIQELRVASLLHDI
                     GHGPFSHLFEEALKVTGNKNHETIGAEIICKTELSDILSGFGYSPKSISEISFGNSKV
                     KFKNEIISGSLSADLMDYLPRDGFFAGVEYGKVDYNRIINSFRVTDNESLALDISSFY
                     SFESMMISRFEMFRAVYFHKTVRSAEVMLLHSILLSSEALNLSKLSLNDYLKLTDDSI
                     LWKIYSSQNNKIAKEMISNYLERKLLKCVYERFIRKRDNYTKLNRDKIEELRLKIARL
                     ANIDERKIFLDTYGISLVPLAPNKKEMKSILLVSEDEFFKQPVSNLPLVNSITGYLDM
                     IRVYTNHKDRKNITNISKDVLDKELPEK"
     gene            complement(9677..10270)
                     /gene="tmk"
                     /locus_tag="VFX26_00660"
     CDS             complement(9677..10270)
                     /gene="tmk"
                     /locus_tag="VFX26_00660"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR00041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004798 - thymidylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HEX5573015.1"
                     /translation="MYLRKGKIIVIEGIDKAGKTTQAKLLQEKLRTKCIRFDFPDYST
                     PVGKEIKQFLDGKRDYSDEVKMILLSANRWEKKAEIERVIGKGTTIIMNRYFQSNLVY
                     GISKGLKLDWLLTLDKGLPGADLVIVIDIKTNTLVTRSKHGIIDTFEKDLELIRKVKK
                     NYRILANKFNWSIIDGEKSVDDVHYQVLKLVKKIVKI"
BASE COUNT         3241 a         1923 c         1812 g         3554 t
ORIGIN      
        1 agactgagcc ctgaaacccg atttattgaa ctaagaacca actattgatt ttagaatttc
       61 agatttttgt tcccaaacca tttaatttga ccctttaggt tttgttctcg tcattaaatg
      121 cgtatacttt tgttacatgc agattttatt gaataccaac cgatctcaaa ggaaatacaa
      181 gctgcagaag atattccttc gaaatctagt aacaaaatag atgaagtaat agtggcactt
      241 gtcgccgttg aaaaggatga tgatgagtcc ataattgatg aagttggaaa tgaattaaag
      301 acatacggtg agatgataaa atgcgatagt ctgctaatct atccatatgc gcacctaagt
      361 tctgatttgg ctacacatac cgtggcacaa tccatattaa attcaattga aaaaaagaca
      421 agagatctgt ttaagattgt aaatagggct ccgtttggtt ggacaaagtc ctttaacata
      481 aaaataaaag gacatcctct ggcagagcat gctaaaacaa ttcagaaaaa gactgacggc
      541 aaaaccaata cggaatcaac tgccgaatca atcgcattaa aatcagagga agtgctcaat
      601 tcctcatggt atgtgcttgt gcctgaaggt aatcttgttc caataaatga gtatacattt
      661 gaaaaagata gtgcatttag aaaattagct gactatgaat tatcaaaaaa gagaacagta
      721 gttgaggtac ccccccatgt gaaactaatg aagaggctgg ctatagctga ctatgaacct
      781 tcttctgacg gtggaaatat gagatactat cccaagggac gtttaatgaa atcactaatt
      841 gagacgtatg taactaagat gatacacgaa tatggtggaa tagaagtcga aacaccagta
      901 atgtatgatt ccaaccatcc gtcaatccat agctatttca acagatttcc agcaagacag
      961 tataacatac aatcagacaa caagcaactt ttcttgaggt ttgccgcttg ttttggtcag
     1021 tttctgatgg ccaaagattt tcaaatttct tacaagcagc tgccgttgaa actttatgaa
     1081 ttaacaagat attcatttag aagagaaaag agcggcgaat tagtaggcct cagaaggctc
     1141 agagccttta gtatgcccga ttgtcatgct ttctgtaggg atatggatca ggcaaaagag
     1201 gaatttgtca agcgatttga gttatcgtta agagtaatag aaggtctcgg tctttcatca
     1261 aatgacgatg tggatatggt cattcgtttt acatcggact tttatgaaca aaataaagaa
     1321 ttcattaaaa cctttgcagc cagactagag aaaccaatac ttgtagaaat gtggaaagaa
     1381 aggttctttt attttattgt aaaatgggaa tttaatttca tagatagttt gggaaaagct
     1441 gcagctcttt caactgacca gatagatgtt gaaaatgggg aaagatacaa aattgaattt
     1501 gttgatagcg atggtgagaa gaaatatcca attattttgc ataactctcc cagtggagcc
     1561 atagagcgtg tgatattcgc tctgttagag aaaacagaca aagataacaa tacaggaaag
     1621 gttccagcat tacctttatg gctatcacac acacaggtca gggtaattcc tgtagcttca
     1681 aaacatttag aattcagtga aaaaatttcg gacgaactgg gcaagaataa tatcagggcc
     1741 gacatcgatg aaagagaact ttccgttgca aaaaaaatta gagaagcaga atctgaatgg
     1801 atccatttca ttctagtcat tggagacaag gaagtcgacg gaaatgaact ggtagttagg
     1861 gaaagggtag caaaatccca atatggcatg gctctggata gtctgataaa aaaaatcaaa
     1921 cttgaaacct ctgataaacc atatttgcca ttaaacctac ccacctattt gtcaaaacaa
     1981 ccgctaatca tggtataaaa ttagacaaga aaatagtatt ctgtttttaa agatgaattt
     2041 tcattcttta atgtttttat atttcgtaac ttagatccca ttcaaatggg aagagtagag
     2101 aaaggagtaa actgcagcgt aagtggatgc tcagaatctg cagaaagatc cataagtgga
     2161 agtaaggcaa gtatggctgc agatttggaa gttaatactt caaacaagag agtatacttg
     2221 tgcaggcagc actataaaga atggaaaaaa gcaaccaagg aagacagaga gaccgaaagg
     2281 gccagatggg gataatcaaa taaacaagca aataacaaga taataatttg tattcaattc
     2341 caaccaagca tctaaacgta ctttcttgga ataatcctta gaagcgtttg tgttgcaagt
     2401 gttccttccc tgtaatcgtc gttcttgaga gatacctcaa ctaggtccat tcctaccaga
     2461 ttagcagaat cgttaatact tttaattatt tttaatattt caaatggatc caaaccaaat
     2521 ggttctgggg ttcctgtaca aggaacataa gaaaggtcat aaacatcaat gtcaaaggat
     2581 atgtaaatat ttctattatt agtaacttta gttatatatt cagttactct ttctatatta
     2641 ctttttattt cccacggatc aaatgttact ataccatttt tttctgcgat actattttcc
     2701 tcctgatctg cctgtctgat ccctacttga aggatatttt caccctgaat gaatccttct
     2761 tctatcaatc tatagaatgg agtagtatga caaagcttca aaccttcgta ttcaggtttt
     2821 agatctcgat gtgcatcaaa atgaatcagt agagggtgag tttctgaaag acccttgaaa
     2881 caaaaatatg acagggtatg ttctcctcca agcacaaatg gtttcttttt tgttcttgag
     2941 agttccttta ccaggggcgt aactttttca ttcaagaagg aaaatataga atctacctta
     3001 ccattatgat attggggtaa tttaatatca cccaaatcaa aaatttttgc tatttccttg
     3061 atatcctttt tttcatcata aacataggtt tcaatttgac gaccagatgc acttctgatt
     3121 gcttcagggc ccctgctggt cccttttcca aaggaagttg tcagttctaa tggaatccca
     3181 aaaaatacaa tgttggattc gttaaatgag gttttcgtat caatgtcacc aaaggaacag
     3241 ccagctttgg tcctttctgg agtaataaag aaagaatcca aaagatctaa aatctttgtc
     3301 aattctgagc caaatcctga aagtaattat gtttatgttt aaagatagat aatagtacta
     3361 gtttgaccaa aataattcat ccaagttgct ctgtcttggc ttaccaataa tggacttgaa
     3421 atttacatct agtgcagtta aaagctgatc aaaagtagat tccatcgcct caaggtattt
     3481 ttcggtatct atttccttgt gattggatag ttcaacaggt tttactcctt cagcggtctt
     3541 tgtctttaca tatgagatta tatctcccgc cttaatctgt ctgccgttgt cagaaaataa
     3601 tcttgctgcc tttatatgtt gagggattcc cttgattgaa ttggtagttg aatcttgacc
     3661 atgtatggag gttattcttg tgttttcaga tgtctttttt ccatattttt ccggggactt
     3721 gtttatcata acattaaaag aaagttcctc caaaggatat tcatttgatt ctaatttttt
     3781 cgcactttct ttaacaatat ctttaatttt ctctctagca gtatcaaaat ctttttcagt
     3841 attaactttg ccaagtatat ctagcatact gtaaaaagtt tttcttatga aagcgggtgt
     3901 gtgagatttc ttgcctgtta gtccttttac atctacagtc ccatccttga ggactccaat
     3961 ataatttttc tttagattat taaatacaac gtagcgatat tctttatcca gttccaagtc
     4021 tacaccctgg ttagtttttg cccattttga aatttcttct acgttaccct cagaaggatc
     4081 cctcaaaaac aatgaatctg tatccccgta gacgaccgct atgcccgatt ccctgcattt
     4141 ctctatagtt ctagagataa tatttcttcc aatggctgcc gtagcatccg caacgggaag
     4201 gcaatagagt ggaaatattt cagcacccat tactccgtag cttgcgttga gaataacctt
     4261 aattgcctga cttaccaccg tatagagttg tcgttcttca ggtgagattg tcttgtcttt
     4321 tgatagttgt ttatagtaat tgactcgaag gtctcgaagc gaacctatca aaagtgacgt
     4381 tattcctttt ttctccttac atgtccagta tgacgtatca gtgatttttt gatcaggatc
     4441 ctgactgcaa gaatcatggg gacagtttac tgtttcatag gatagattat gaacctttat
     4501 tatacttgga tacagactgg caaaatcaac tactgataca ttgaagtgaa ttcctggtgt
     4561 gggttcaacg acaagacctc ctctatactt tttttctttt attattgcct cggaagatgc
     4621 ttgacccttg tatcgcagct cttcgctgtg gggaatcagc gcatttattt ttcggtgctc
     4681 ataaaatagc attcccctga tccactggtt cacacccacc ctagaaagat cttctattga
     4741 aagtctggaa atcctggcga ttgcaaataa taattttagt aaaagattat cattaaagct
     4801 tgtaagtcta aacgtcaatt ctgtatcttt tagacagtat tgagccaatt tttggattgg
     4861 cagatcgctt atgtttccat caaattcaat cttactatca tttaaaaggg cttctgagat
     4921 cgcatttagt ctgtattcag aatatttgtg gctaaacgca taaatttgaa ttgatctatt
     4981 ttggaatgtt ctaaatagat caatatgtac tccgtgtttc agttggactg gttctgcctg
     5041 gatacccttt ttgataaaag aatctcgttt tacaagtaat gggatttctt cttttggtat
     5101 aatggtgtgg tttataggat caattgctgg atcttgagat ctctcatata gataaggaag
     5161 atcaaaatca tcaccattaa aggtaactaa cacactatat gaccaaattg tatcaaaggt
     5221 tttttccaaa agttcttttt cggtcttgca catttctgcc tctggaatta gggctgttcc
     5281 atcattggga tttttatctt gttcaagaag aagtactttt ctaaagccat catttgatac
     5341 taaccccact gcagtaattt ttctattatg ttccttagga actggcatgc gtccctcctc
     5401 tgaatccact tcgatatcaa gtgctattct tttcatttct ggaataggtt ggttcagtag
     5461 atcagcccac tctctcacgt attctctata cttgtcattt cttgcctcct tgctctctaa
     5521 gatcttatcc catagaaaat ttttcagggc attgtagaca atgtctgaca ttttataagg
     5581 atcttcaatt atttcgtctc cttccctctt gtagtatgaa cctggaatta gcctagtatc
     5641 ataaagatag ttttcatgat attttatgtt ggcttcccat acattgagtt tttctctaat
     5701 gccacccttt ccacctatcg acagtggatc tggtgcaatt atttttattg tttgaatttc
     5761 cttatctgac attagatcca tttttggaat tatctttagc tcaaatttct tttctatggc
     5821 cgcaatttct tctgctcttt tttggtattc cagtttagta taacaatatg gtttgtgatc
     5881 cgttttatcc tgccaaaaat atatcacatg taaattggga tcatagaatt ttaattgaac
     5941 tttttgattt tcaccagaat aaattgctga tattaacatg actcgagtat tttccggaag
     6001 ctccttccaa taactcaaat gttgtttatc tttatcattc tgaagaagtg acgattgatc
     6061 caattttact cactgggaat agtttcaaat atggaaattg gataattatc ttttgctact
     6121 attatcttcc atttttattt gcggaaggta aaatccggct tttgcaatat attaaacagt
     6181 tattgcatta ccttctttac gtctaatagc tataatacca acagcgtata gcccaatcat
     6241 cggtaatgca atgaaccaca tcgtgacacc ggttccatct ggtgttatta tcgcaccaaa
     6301 tatcgttatg attattactg cgtatctaaa atttctttgc cagaattttg aatcagtcag
     6361 accacttaga gataaaacat acatcaggac tggaagctga aatgcaattc caaatgccag
     6421 tatgaattgc agtacaaaag ctataaaatc gttgactgtc agtaatgttt cagcacctat
     6481 tgattcacca tacttgtaga ggaagtcgag agtcaatgga attacaagca catatgagaa
     6541 taccacacca attatgaaca aaagaaatat tggtgatatt attttgaaaa gatctatttt
     6601 tgaaaatgac cttttacttt tttttccatc ttcttttctt gtttgctgtg cattgccttg
     6661 tgccgcgtca tcctctgtat ttgtatttct tacatctctg ttatcatatt ccccgtcact
     6721 ctttgtttgg taaaatgcag gagaaataaa gccaaatatt tctctgatta cgattggcag
     6781 ggagcatatc aagccaatta gcaaggagat gtgaatttga gcaaagaata cctggccggg
     6841 agctgtttga ataagcttta cttctggtgg aagtagcgta tccttcataa aacttgtcag
     6901 ctggagtgct acattgttaa atggatccgg ggatagataa tacagcgtga gattctgttg
     6961 ttgacttgca tcttgggatg gaaatggagg tgtaataggt acaatcgctg tttttatgcc
     7021 aaaactcatt gaaataatgg ttattattgc aatgcaaata acaatgcgaa ccaaccttat
     7081 tctcagttca tcaaaatgtt cagctattga catcccaggt gtagacatta caatgtccga
     7141 caataaacaa tctcgatata ataattatgt tgatatatca ctgcatggct ctgcagagcc
     7201 tgtgttttat caagaataaa ctatttttta aagggaatcg aaccccggta aaaaaatcat
     7261 aatactttgt aggtaaatac ttttagaagg taaaaacata aagatttcaa tgcaatatca
     7321 caaggcttct ttcattggcc atgaaagatc caaaaaggct caattaaagc tgtttgatta
     7381 tactggctat gccatgttaa catatactgt aaaacaagat gggagtggat ttgctccggt
     7441 aggtgaagaa atgctggttg gcaaaatgga aagagaatct gaggcaatgt tatttctatg
     7501 tgataatgat ggttatgcaa aagctcaatc aaaaccgtta ccaaaggaaa aggcaattga
     7561 agcatataag aaaatgctag atgacggtat tcaagaattt aagggccaga ttaaaactgt
     7621 tacataaaca ataacgtatt gtgaaacact tggcaattaa taaattggat gctacattaa
     7681 aaagtaaacg ttactaaatt ctagacagta atcttcgtcc cagattgtct gtttttcatg
     7741 atgatgtttc taataacatt aggatctgat tttattacat atgtaggaat ctttgatctt
     7801 tcaattacct tcattgcaac aatgtccata agttcataat tacctgcctg agtgctctcg
     7861 ttattcaaca ggtctagaca tttttttata gtaatttcct taaacatttt tgcctttgcg
     7921 ttcttctttg gatcagaatc ataaattcca tcgacatctg ttgcattcaa gaatctatca
     7981 gccttgattt tctcgcaaat aagtgctgct gtagcatttg tactctgacc tggatgaagt
     8041 ccaccactga ctattatctt gcctgattgg caagcaatag taatttcctc aagatttgaa
     8101 ggaattactg gataaacaga atctccaaga gctgcagaaa gcaacattgc atttagcctg
     8161 gatatttcta tgcccatttc gtcaagactg ctctcatcag accctaatga tcttgctaaa
     8221 ttaacgtaat gccttgcaat tattcctcca ccagacacca caactggttg cactttggta
     8281 tgtatgtcta gcaaaacttg agcgtattcc tttagagact ttgaagtagt cttaaaatta
     8341 aatacactac cgcttaattt tatgactaga atttttttct gttttgaaac ctctttggag
     8401 acgctcatta tttttctggc agctccttat ctaatacatc ttttgatata tttgtaatgt
     8461 tctttcgatc cttatggtta gtataaactc ttatcatatc aagataacct gttattgaat
     8521 ttaccaaggg gagattagaa actggttgtt taaagaattc gtcctcacta acaagaagta
     8581 ttgatttcat ttctttcttg tttggggcaa gtggaacaag agaaatgcca tacgtatcaa
     8641 gaaaaatttt cctttcatca atatttgcta atcttgctat tttcaatctc aattcctcaa
     8701 ttttatctct atttaatttt gtataattat ctcttttacg aataaatctc tcgtacacac
     8761 atttcagtaa tttcctttct aaatagttag aaatcatttc ttttgcaatt ttgttatttt
     8821 gtgatgaata aatcttccac agtatgctat catcagttag tttcagataa tcatttaatg
     8881 ataatttact caggttcaat gcttcacttg agagcaagat ggaatgaagg agcattactt
     8941 cagcagagcg gactgtcttg tgaaaataga cagcacggaa catttcgaat cttgaaatca
     9001 tcatagattc aaaagagtaa aaggatgaaa tatccagagc caaactttca ttgtcagtta
     9061 ccctgaatga attaataatt ctgttataat ctacttttcc gtattctact cctgcaaaaa
     9121 aaccatccct tggaagatag tccatgagat ctgctgaaag gctccctgaa attatttcgt
     9181 ttttgaattt aacttttgaa ttgccaaaag aaatttcgct tatgcttttt ggagaatacc
     9241 caaagcctga aagaatatcg ctcaattcag ttttacaaat tatttctgct ccgattgttt
     9301 catgattctt gttgcctgta acttttagtg cttcttcaaa cagatgggaa aaaggtccat
     9361 gaccaatatc atgcaagaga gaagctaccc gtagttcttg aattgattct ttctccatag
     9421 ctcctattga aaatagatgt tctcctgcca ggcctgccac atgcattgtt cccagagaat
     9481 gttcaaatct tgaatgctgt gcagcagggt agactaggtg agcacctgcc aattgcttaa
     9541 ttcttctcaa tctctgaaaa acaactgaat caattatttt tttttccaga tctgtaaatc
     9601 taataaactt gtgaatagga tcagcaattt ctccaacgaa tttcatgtcg acaagagaat
     9661 ttaacgccac actgaattaa attttcacaa tcttttttac taatttcagt acttgataat
     9721 gaacatcgtc gactgacttt tctccatcaa taatgctcca gttgaatttg tttgcaagaa
     9781 ttctgtaatt tttctttacc ttcctaatca gctccagatc tttttcaaag gtatcaatta
     9841 taccatgttt agatctggta accagggtgt tagttttgat atctattact attacaaggt
     9901 ctgcgcccgg taagcctttg tccaatgtga ggagccagtc taatttcaat ccttttgata
     9961 ttccatagac cagattagat tgaaaatacc tattcatgat aatcgtagtt cctttaccaa
    10021 ttactctttc tatttcggcc tttttctccc atctatttgc agataggagt atcattttca
    10081 cctcatctga gtagtctctt tttccatcaa ggaattgctt tatctcttta cctacagggg
    10141 tagaatagtc aggaaaatca aacctgatgc acttggtcct taatttttct tgcagtaatt
    10201 ttgcctgtgt tgtttttcca gctttgtcaa ttccctctat aactataatt ttacccttac
    10261 gcaaatacat tctttgaaaa aaatgtcgta aataaaaagt attttaaaaa ttcataattt
    10321 ccaagatgtc ttccttgtat cagagcgtca tttacatgag taagagaatg aactatactt
    10381 aaccacagtc aacatctccc tcaaaagttc ctttccaacc agaatcagct cgaacctgga
    10441 tttttgcttt atttccacaa tctccattta ttgaaatatt tcctttcttg tctaactcac
    10501 aaatattact ggttgtctct ttaccctcca
//
LOCUS       DASUMD010000029         2790 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_7756, whole genome shotgun sequence.
ACCESSION   DASUMD010000029 DASUMD010000000
VERSION     DASUMD010000029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2790)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2790)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2790
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_7756"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..791
                     /locus_tag="VFX26_00665"
     CDS             <1..791
                     /locus_tag="VFX26_00665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573016.1"
                     /translation="KHDDPICSIAFRSSLDRANTFTTSKIVSNKILPLEGYEGYSSFN
                     GTVVNASSNTIFPHILENVTVQETINSINPTVFTTLEGKRVYVLWEQSIFGKGDSEIF
                     LTVSNDYGKSFNSTINISNTSGISRLAHGQLLGEDIYVTWSDTLNNSKTFDVMLRKID
                     SNLAGNVINLSNNSGNSVSPYLLVSNNKIYVTWSDDTNNSSVLLWIGNTFGSPVMKKV
                     VSNGQAEVYSDPLIFDTENKVWIAWTQYDNNNHKIVLLYQEKPL"
     gene            complement(982..1821)
                     /locus_tag="VFX26_00670"
     CDS             complement(982..1821)
                     /locus_tag="VFX26_00670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEX5573017.1"
                     /translation="MEMVFDLIQYGFMQRALISAIAISVICSIVGLFLVLKRHSLFGD
                     ALAHVAFGGISLGLFIGVYPLWTAYIVSILSAVGVNKLRESTKIPPDSSIAVLLTSGL
                     AIGVILISISGGFTLNLFSILFGNILLVSNDDVIMILITAAIVIPVIYILYKKLVLII
                     FDENQAKVSGLNVTWINTLFIILASITIIASIRLVGVLLISSLIVIPNITALMLGKGF
                     KKTLLISCAMSVVSVVFGIVISYYSNVVPSGTIVLTLVSMFLITVIAKNMKIRINKIA
                     VTK"
     gene            complement(1805..2590)
                     /locus_tag="VFX26_00675"
     CDS             complement(1805..2590)
                     /locus_tag="VFX26_00675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HEX5573018.1"
                     /translation="MQPIIKVANLSYYYDSIPTLDHISFTVDKGDFLGIIGPNGAGKT
                     TLFQCMLGIVNNFSGEINLFGFDIRQNKNMLQRIGYVPQKKSVEQAFPATVSEIVSLG
                     MIGRKINRESIDSAIEFVELGAYRNKRIGELSEGQQQRVIIAKALVKQPDLLILDEPT
                     TGIDSAAQQRFYDLLTKLNKDKRITIVWSSHDLNAVEKLASKVACIDRKLFFHGESED
                     FFGNEERMKSYVEFAMQSHMNLHFGNQKNRADDPENKIDGNGI"
     gene            complement(2578..>2790)
                     /locus_tag="VFX26_00680"
     CDS             complement(2578..>2790)
                     /locus_tag="VFX26_00680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX5573019.1"
                     /translation="KSLDLRVVYSEELIDSRYALVIAQEIPNSKVLVLSPIEGLTKNE
                     QDAGIGYIDKMHENIKNLSAGLECNQ"
BASE COUNT          922 a          499 c          456 g          913 t
ORIGIN      
        1 ctaaacatga cgatcccata tgtagtatag catttagaag tagtctggat agagcaaata
       61 cctttacaac ctcaaaaatt gtaagcaata agattctgcc acttgaagga tatgaaggtt
      121 attcttcatt taacgggaca gtagttaatg ctagctcaaa tacgatattt cctcacatat
      181 tggagaatgt aactgtgcaa gagacaatca attctatcaa tccaactgtc tttactacac
      241 tagagggtaa gcgagtatat gttctatggg agcaaagtat atttggaaaa ggcgattctg
      301 aaatatttct tacagttagt aatgattatg gtaagtcgtt caattcaaca attaatataa
      361 gcaatacttc tgggatttcc agacttgcac atggtcagct tctgggagag gacatttatg
      421 taacttggtc cgatacactc aataatagca aaacgtttga cgtcatgtta agaaaaatcg
      481 actcaaacct tgcagggaat gtgataaatt taagcaacaa ttccggcaat tctgtttctc
      541 catatttatt ggtcagtaac aacaagattt atgttacttg gagtgatgat accaataata
      601 gttcagtact tctatggatc ggaaacactt ttggatcacc tgttatgaaa aaggtagtga
      661 gtaatgggca ggcagaagtc tattcagatc ccttgatttt tgatacagaa aataaagtat
      721 ggatagcctg gacacaatat gataataata atcacaaaat agtcttactt tatcaggaaa
      781 aaccattata gctatttcat agtcagtata gattgttttt tctattacaa tccaaataac
      841 tctagaagaa ttaggaatct atattttaag tatttaatac aaattctaat atattacctt
      901 agataaacct aatttgtttc cggataagac tctaaacgga acttgtgatt ttcactgtca
      961 ttgatttagt tgtgtgttct tttatttggt aactgcaatt ttattaattc taattttcat
     1021 attttttgca ataacggtta tcaaaaacat tgataccaat gttaaaacta ttgtaccact
     1081 cggaaccacg tttgaataat atgatatgac tattccaaat acaactgaaa ctacagacat
     1141 tgcacaagaa ataagcaaag tcttcttaaa tcctttgcct agcatcagtg ctgtgatgtt
     1201 tggaataacg attagtgacg agataagcaa aacacctaca agtcttatag aggctattat
     1261 ggttatgctt gcaagaataa tgaataaggt atttatccat gtgacattta atccgctgac
     1321 ctttgcttgg ttctcatcga atattatgag aactagtttc ttgtagagta tatagatgac
     1381 aggaataact atggcggcag tgatcaagat cataattacg tcatcattgc ttacaagaag
     1441 gatatttcca aatagaatac taaataaatt gagtgtaaat cctccggaaa tactaattag
     1501 tataacacct atagccagac cagaagtcaa aagtacagct attgaggaat cgggaggaat
     1561 ctttgttgat tctcttaatt tattcacacc aacagcagac aagatggaaa caatataagc
     1621 ggtccatagt ggataaactc caatgaatag tcctaacgat atgccaccaa atgccacatg
     1681 tgctagagca tcaccaaata gtgaatgccg tttaagtact aagaaaagac ctacaataga
     1741 acaaataact gatatcgcaa tagcagatat cagagctctt tgcataaagc catattgaat
     1801 taaatcaaat accatttcca tcaattttat tttctggatc gtcagctcta tttttttggt
     1861 taccaaaatg gagattcatg tgtgattgca tagcaaattc tacataagat ttcattcgtt
     1921 cctcatttcc aaaaaagtct tctgattccc catgaaaaaa taatttccta tcaatacacg
     1981 cgaccttact tgctaatttt tctacagcgt tcaagtcatg tgaggaccat acaattgtta
     2041 ttcttttatc tttatttaat ttggtcaaaa gatcataaaa tctttgctga gctgctgaat
     2101 cgataccagt agtaggttca tccaatatca ataagtcagg ttgcttcacc aatgctttcg
     2161 caattatgac tctctgttgc tgaccttcag aaagttctcc tattctcttg tttcgatatg
     2221 ctccaagctc tacaaactca attgcactgt cgatagattc tctgttaatt ttccttccta
     2281 tcataccaag tgagacaatt tcactaacag ttgcaggaaa tgcttgttct acagattttt
     2341 tttgtggaac atatccaatt ctttgaagca tattcttatt ttgtcttatg tcgaacccaa
     2401 agagattgat ttcaccagaa aaattattta ctattcctag catacactgg aataaagtcg
     2461 tcttccctgc tccgttgggc ccaattattc caagaaaatc ccccttgtcg accgtgaatg
     2521 aaatatggtc caaagtaggg atcgaatcat agtagtatga taagttggct actttaatta
     2581 ttggttgcat tctagtcccg cagataaatt tttaatattc tcatgcatct tgtcaatata
     2641 tccaattcca gcatcttgtt cattctttgt tagtccttca ataggactta atacaagcac
     2701 tttgctattt ggaatttctt gggcaataac taatgcatag cgagagtcta tcagttcttc
     2761 cgaatagaca acccgaagat ccaaactttt
//
LOCUS       DASUMD010000030         3784 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1113467, whole genome shotgun sequence.
ACCESSION   DASUMD010000030 DASUMD010000000
VERSION     DASUMD010000030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3784)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3784)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3784
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1113467"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..289
                     /locus_tag="VFX26_00685"
     CDS             <1..289
                     /locus_tag="VFX26_00685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573020.1"
                     /translation="NGINISLSLIEDIELESVSQQQLMLEAIDRSISDEEVKKQIKPI
                     LEAILRSQPQTVIKTYPKTVIQINMPRKKYENIGSPTVGKKILIDIKPETK"
     gene            complement(401..703)
                     /locus_tag="VFX26_00690"
     CDS             complement(401..703)
                     /locus_tag="VFX26_00690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573021.1"
                     /translation="MAEDISSTASNTIPFPTLTIVYLVSQAEGLIDEISQKYNNITVE
                     DCNGFFNGGLKRDYKKITIWSQGIDSLWFNALIARIKEIANVDSVPIVSGGIMYSV"
     gene            848..1372
                     /locus_tag="VFX26_00695"
     CDS             848..1372
                     /locus_tag="VFX26_00695"
                     /inference="COORDINATES: protein motif:HMM:NF042555.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6659 family protein"
                     /protein_id="HEX5573022.1"
                     /translation="MNDVDFLNSLLAINPSLRFSGLVEKSGHLSASVIRQGISEHLKG
                     RNPEISYTQSAYIIELRKIFENELGNLNSVIYIYDKVIMFSIPIRNHIVVISSDKDIN
                     IDSVFKQVQSFIKNSETELDLELDVKNISQDKKESVRNLYDSGISEEMIAEQVDLNLA
                     TVKNLIKIITTSTK"
     gene            complement(1459..2202)
                     /locus_tag="VFX26_00700"
     CDS             complement(1459..2202)
                     /locus_tag="VFX26_00700"
                     /inference="COORDINATES: protein motif:HMM:NF021287.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAC2 family protein"
                     /protein_id="HEX5573023.1"
                     /translation="MSNSQPFVIKTLKKMSLKGGTVIDGFATTGITNTIASECILHSI
                     NTQLVATIESSYFSQLSVIRNSIPYFPVRIYANEELKTSIFISEISIDPSLYFFIGNI
                     MLNWAKDNECNLIISSSNIVNPRQQTEPIDSKEYSIAGIGNTVGARNRLKDSKISLLK
                     NGTIGGIPAVLLNQSSELGIDVVILLVKIVEGIPDFRAAAELSTTISRLVPGVTCDVP
                     LLLQEAEKIEKEIGKIKTQDTESELNAYG"
     gene            complement(2301..3035)
                     /locus_tag="VFX26_00705"
     CDS             complement(2301..3035)
                     /locus_tag="VFX26_00705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573024.1"
                     /translation="MDSKNKESLKFLLTYPLFDQDTFESRINELLSLDINGIFSFGNV
                     QLKKICILGKGSVGLVTLARFKMKYFALKIRRTDANRTNMFDEVVYQSLANSVGIGPF
                     LVNFSDNFILMEFIKGSNIVDWYNSVRTSNERILKCTALILEQCYLLDCLKLDHGQLN
                     RLDRHIIISKDDRPTILDFETSSAMRRVSNITSVSQSIFLHGPIYSRLQDSINKDRTQ
                     IMKNIKDYKIQMNHEKFKKILNLLRH"
     gene            complement(3025..>3784)
                     /locus_tag="VFX26_00710"
     CDS             complement(3025..>3784)
                     /locus_tag="VFX26_00710"
                     /inference="COORDINATES: protein motif:HMM:NF045300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573025.1"
                     /translation="AGLEPNHIVSLDSRDEKAVEKFTSPIIIIDPIDSNRNLGAAIST
                     ECLAKFILASRLFLKNPSMDFFTKPQRFNAKIVNQIKYNLLIIEFRIQKRSPDILWGQ
                     LKKKLTSISKQLTNARFEIIKKSCFTDEEEHAVFIFMIEFTNLPRISVNRGPQIYLRT
                     ETDSFINKRGKKSIMIWTDSNRIVSIEGTKNMSIKVHANRIIQNDIGSGSHGGITSDL
                     KKSYSIYLGNERKLSSFVSSAISLMVHDGEFIGQ"
BASE COUNT         1196 a          669 c          612 g         1307 t
ORIGIN      
        1 taatggtatt aacatttctc tgtctctaat tgaagatatc gaattggaat cggtgtcaca
       61 gcagcagtta atgctagaag ctattgatag gtctatttct gatgaggaag taaagaagca
      121 aataaagccc atacttgaag ccatcctgcg ctctcaacca caaactgtta tcaagactta
      181 tccaaagaca gtaattcaga ttaatatgcc aagaaaaaag tatgaaaata taggcagccc
      241 taccgttgga aaaaagattt tgattgatat aaaacctgag accaaataaa atgtatctta
      301 ccgcttattt agaagcctat ttcctttgta atttgtcctt gggaaaacca caatattagt
      361 tgtattttga ataaaaaata attgcaaatc aagttaaaag ttacactgaa tacattattc
      421 caccagatac tataggaact gaatccacat ttgcaatttc ttttatccta gctatcaaag
      481 cattaaacca caggctatca atcccttggc tccagatcgt aatcttcttg taatctcttt
      541 taagaccgcc gttaaaaaag ccgttacaat cttctacagt gatattgtta tacttttggc
      601 ttatctcgtc aatcaatccc tccgcctgac ttacaaggta tactattgtt aacgtaggaa
      661 aagggatagt attcgaagct gttgaagaaa tatcttccgc catactggtt caattaatta
      721 ttaagatcaa tatcttgttt tcgtagttcc gctgacaatg gtggtcttat ttgatagctc
      781 tttccatacg cggcctcaca tcttggccca aacacagata tatttctggg ctactagata
      841 ttgttccatg aatgacgttg atttcttaaa tagtctactg gcaattaacc catctttgag
      901 gttttccggg ttggtcgaaa agtctgggca cctaagcgca agtgtaattc gacagggaat
      961 tagtgaacat cttaaaggta gaaacccgga aattagttat actcaatcgg catatataat
     1021 tgaattaaga aaaatatttg aaaatgagtt ggggaatctt aattcagtaa tttacattta
     1081 tgataaggta attatgttta gcattccaat aagaaatcac atagttgtta tttcatcaga
     1141 caaggatatc aatattgatt ctgtctttaa acaagtacaa tccttcatta agaatagcga
     1201 aaccgagtta gaccttgagt tagatgtcaa aaatattagt caggacaaaa aagaaagtgt
     1261 caggaattta tacgattctg gaatatctga agagatgatt gcagaacagg ttgacctaaa
     1321 tttagctact gtcaaaaact tgataaaaat tatcacaacc agtacaaaat agtacattgc
     1381 cacttagttt agtctaacaa gcccttaatt tgctaattaa attaagacag gattcaatat
     1441 ctacaagctg atggcatttt agccataagc attcaattca ctttctgtat cttgggtctt
     1501 tatcttgcct atttcttttt caatcttttc tgcttcctga agtaatagag ggacatcgca
     1561 tgttacacca gggacaagtc gacttattgt tgtggataat tccgctgctg ccctaaaatc
     1621 aggaattcct tcaacaattt tcaccaacaa aattactacg tcgataccta attcggaact
     1681 ctgatttaaa agaactgctg gaatccctcc tattgtacca tttttgagta atgaaatttt
     1741 cgaatctttc aacctgtttc ttgctcctac tgtatttcca atacctgcga ttgaatattc
     1801 ttttgaatca ataggctctg tctgttgccg tgggttaact atattgctcg agctaattat
     1861 gaggttacat tcgttatcct ttgcccaatt taacatgatg tttccaataa agaagtataa
     1921 tgaagggtct atgcttattt cagagatgaa aattgatgtc ttcaattctt catttgcgta
     1981 tatccttaca ggaaaatatg gaatagaatt cctaataacg gatagttgag aaaaataaga
     2041 tgattctatg gttgctacaa gctgagtatt aattgagtgt aagatacatt cagaagcaat
     2101 agtattagta ataccagtcg tagcaaagcc atctattact gttccacctt tgagactcat
     2161 tttctttaga gtcttaatca caaagggctg ggaattagac atttaattag atttaacggt
     2221 actaccttaa gtatattaat gtacaaaatg caagaatcac tgcacattct tatttgattt
     2281 gcttcatata ccagacaatc ttagtgtctt agcaggttga gaattttttt gaatttttca
     2341 tgattcattt gaattttata gtctttaata tttttcatga tttgtgtcct atctttattg
     2401 attgaatctt gaagtctgga atatattggg ccatgtagaa aaattgattg agatacgctt
     2461 gttatattac tgactctcct cattgcactt gaagtttcaa aatccaaaat tgtaggtctg
     2521 tcatcctttg atattattat atggcggtca agtctattca gctgaccatg atcaagtttc
     2581 aggcaatcaa ggagataaca ttgttcaagg ataagagcag tacatttcaa tattctttca
     2641 tttgaagtcc gtaccgaatt ataccagtct actatgttag aacctttgat aaattccatc
     2701 aatataaaat tatcagaaaa attcacaaga aagggaccaa ttccaactga gtttgcgagt
     2761 gattggtaaa ccacttcatc gaacatattc gttctgttag catcagttct tctaatcttt
     2821 agagcaaaat atttcatctt gaatcttgcc aatgttacca aaccaacaga gcccttccca
     2881 agtatacaaa tcttcttcaa ttgaacattg ccaaaagaga aaatgccgtt tatatccaag
     2941 gataacaatt catttatcct gctttcaaac gtatcttgat caaataaggg gtaagtcaat
     3001 aaaaatttta ggctttcctt atttttactg tccaataaat tctccatcat gaaccatgag
     3061 actaattgca gaggaaacaa aactgctcaa ctttctctca tttcccaaat atattgaata
     3121 gcttttttta agatcggatg taatgccgcc atggcttcct gaaccaatat cgttttgaat
     3181 tattcgattt gcatgtactt ttatcgacat gtttttcgtt ccttcaatac ttacgattct
     3241 attactatcg gtccatatca tgatggattt ctttcccctt ttattgataa aagaatctgt
     3301 ttctgttctt agatatattt gaggtcctct atttacacta attcttggca ggtttgtaaa
     3361 ttctatcatg aaaataaata ctgcatgttc ttcttcatcg gtaaagcaag atttcttgat
     3421 tatttcaaat ctagcatttg tcagctgttt tgaaatgcta gttaattttt tcttaagctg
     3481 accccacaat atgtccggac ttcttttctg gattctaaat tctattatta acaaattata
     3541 tttgatctga ttcacgattt ttgcattgaa tctttgaggc tttgtaaaaa agtccattga
     3601 aggatttttc aaaaataatc ttgatgctaa aataaatttt gcgagacact ctgttgaaat
     3661 tgcagcacca aggtttctat ttgaatcaat agggtcgatt attattatgg ggcttgtaaa
     3721 tttttcaact gccttctcgt ctcgcgaatc gagtgagacg atgtggtttg gttccagtcc
     3781 agca
//
LOCUS       DASUMD010000031         6737 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_892542, whole genome shotgun sequence.
ACCESSION   DASUMD010000031 DASUMD010000000
VERSION     DASUMD010000031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6737)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6737)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6737
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_892542"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            104..598
                     /locus_tag="VFX26_00715"
     CDS             104..598
                     /locus_tag="VFX26_00715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573026.1"
                     /translation="MSRKLEEKEANISDLDRKLLKILLQPNGDLKSSKTLSAKLRIPI
                     TTVRRRRKRLESTFLKLHYVLDIEKFGWKRVDFFIAIRNGMVNAVANKLLDSDEVTYV
                     GKSIGEHTIDLRVETILKDNASVLDILEKIKAMDGVRDVVWSEIVSVVGRKISIPGSI
                     IDKI"
     gene            complement(964..1383)
                     /locus_tag="VFX26_00720"
     CDS             complement(964..1383)
                     /locus_tag="VFX26_00720"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX5573027.1"
                     /translation="MSVENRVVSIVDDDPDIVMLFRDALQSLSGITVLTFTDPILALE
                     HFQLNEYPYVLVIPDYKMPGLNGMEFLKKIKELNRFVRTMLMTAFQIEDKVFREYTKK
                     KIINAFLQKPIGIHDLLKEVDTQLHSYEMQKKFPAIG"
     gene            complement(2285..2917)
                     /locus_tag="VFX26_00725"
     CDS             complement(2285..2917)
                     /locus_tag="VFX26_00725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573028.1"
                     /translation="MTNVKISGKRLIDKKVKSFDGKDVGKVKSITPEFVELKDGDKRY
                     FVPKLHFKEHDKDLYVLLLEDEVKDKYQRKDPPLPSEIQEAERTGEGYTSFHEIIPFM
                     AKEPDLELKGEKSGEILTIPWEDVIHKHVRTTDNIDIGDVDRVGNEFIVVREGVANVH
                     LYYIPKQYITNYDGSSIWIDVASGLVSPKFEREDEPTQEEIDMLLDEVPD"
     gene            2994..3374
                     /locus_tag="VFX26_00730"
     CDS             2994..3374
                     /locus_tag="VFX26_00730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573029.1"
                     /translation="MPEENIEGPTVMWTELDDAKVKTNDGKKLGKIKKISQNHFRVEK
                     GTISKKSFWVPKNLADAYDGDYLWLSNNEEEVHDKFLYGEEPSVDDKIAPIERIKVVK
                     ERMVGISTKPKDSSDPYKNVRDLK"
     gene            3712..4182
                     /locus_tag="VFX26_00735"
     CDS             3712..4182
                     /locus_tag="VFX26_00735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573030.1"
                     /translation="MIQEKIGEALGLEMAAQKAVEELDSRGLLESEHMKKLAKMREEA
                     SDQEEEMQQLVKELADSDGLDPSTIEEKAEETAEKVSKIMETYLGEDPDTQEALEFLC
                     LAEGGEVAHYEVLAAVSKDVKNKKFGTKVRAILKEEKRHLDLCTKLAKSNAASE"
     gene            4340..4588
                     /locus_tag="VFX26_00740"
     CDS             4340..4588
                     /locus_tag="VFX26_00740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573031.1"
                     /translation="MGDTVEEVKDSVEDTVEEVKEGVRKTAEKITDSDTYLGSDDEKE
                     NKDNEVGGKDPMNPDDIAKHEPTAVKRDKNQGSSGDPV"
     gene            4785..5129
                     /locus_tag="VFX26_00745"
     CDS             4785..5129
                     /locus_tag="VFX26_00745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573032.1"
                     /translation="MGEIIRKTNKEPRRSFRTAAVALGISIISDALDYLAAPLFSTPV
                     IGDVFDVITTGILYSITKSKVSVVMNLAEFIPFVGDFLPVYTVSTLIWIVREYGYESS
                     IRKLLGMISNKR"
     gene            complement(5358..5540)
                     /locus_tag="VFX26_00750"
     CDS             complement(5358..5540)
                     /locus_tag="VFX26_00750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573033.1"
                     /translation="MTRIRTDLPLISDKEMEEWAQDIVENTHYRDLKTLRMKLDQAIE
                     SHDNDLDLQPNVTSAN"
     gene            complement(5952..6548)
                     /locus_tag="VFX26_00755"
     CDS             complement(5952..6548)
                     /locus_tag="VFX26_00755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573034.1"
                     /translation="MSSNRQKEKEETEKLKEMLPTEAEKKEIEKLAAEKNKEVRENIN
                     ITLDETKSSVHKTTEEAKKQVPQFTKAMNEYQEESIEATRDIAEDFLESQKQVINSYQ
                     SLWVPYMENVQNTYWSYWASPNRMTENYTRAVSNITDSTIAATRLANNFMFASMESWK
                     TTMQHARNNAIEFSRLNANYAKAYQNAVRDSLRDYRRE"
BASE COUNT         2174 a         1136 c         1294 g         2133 t
ORIGIN      
        1 atctagaaat cttgaatact tatcattaca ttcaaattaa ttacaactaa aaattaatta
       61 cggataaaaa ttatataact ggaattccaa tctataagta aaagtgtcaa ggaagttaga
      121 agaaaaggaa gctaacatat cggatttgga taggaaattg ttaaagattt tactgcagcc
      181 aaatggtgat ttaaaatcta gcaagactct atccgcaaaa ttaaggatcc caattactac
      241 tgttagaagg agacgcaagc ggttagaaag cacatttttg aaattgcact acgtactgga
      301 tatagagaaa tttggatgga aacgtgttga cttttttatt gcgataagaa atggaatggt
      361 aaatgctgtt gccaataaac tgctcgattc tgacgaagta acttatgtag gaaaaagcat
      421 aggagaacat acgattgatt tgagagtaga aacaattctt aaagataatg cttcagttct
      481 tgacattctt gaaaaaataa aggcgatgga tggagttagg gatgtagtat ggagtgaaat
      541 tgtaagtgtt gtaggaagaa aaatatcaat tcctggttcg attattgaca aaatttaata
      601 acaaaactat gaattgtaaa gtcgtgaata agagaacatt tcatcaaata tctttctatc
      661 cttcttgtct aaacttttcc tgaatatttt ccatttgctt ctttcgattt cagttgcgat
      721 tcgataggaa ggaactgttc gacccacaat ttcattatca aaattttgaa tttaaaacct
      781 aaatcactga ggggacggag agatgaggta agacgggatt ggttaaaacg aattgaagaa
      841 tcaaaattgg atttaaaaaa agttgggagt cgatgagcag attttcgtat aaggaagaac
      901 acgaaggtcc tgaaattcaa gcagaaattg gtaaaggcaa tattgtaaat attttatacg
      961 actctagcca atagcaggga attttttctg catttcataa gaatgtaatt gggtatccac
     1021 ttctttaaga agatcgtgta tacctattgg tttttgaaga aatgcgttta tgattttctt
     1081 tttagtatat tcacgaaaca ccttatcttc aatttgaaat gcagtcatta acatcgtcct
     1141 tacaaagcgg ttcaattcct ttatcttttt aagaaattcc ataccattca atccaggcat
     1201 tttgtaatct ggtattacca gcacataggg atactcattt agttgaaaat gctccagtgc
     1261 aagaatagga tctgtaaacg ttaatacagt tattccggat aaagattgca acgcatcacg
     1321 aaaaagcata acaatgtctg gatcgtcatc tacgatacta accaccctat tctcgacaga
     1381 cactatactc caaactctcc atcatcgtat acataactta ttgttactat cggataacaa
     1441 aatataaata atctcatggg ttgggacata tttgttttcc atttatcata tagcaatttg
     1501 gtggtaaata gttagtgctt ccaaagttat tctctaccat aaaaaagaac cacattccaa
     1561 ttataattgc agcaacggaa attattattg ttattactat cagtctcctc ctactgaatt
     1621 tcgacaaaga tgatttactg tcgttgtcgg aaatgtgcac ttattatatt agatgaaata
     1681 ttccttttaa cgctttcata tccgacttac aatatattgt tgtttagtag gatcggcggg
     1741 gcaaagattg ctcatttaaa ctcctccgca ttagtaaagt tggttccagg cagttacaca
     1801 caatctttta ttaggaatga tgcacattca attttaatgt cacaaggtgg tcaaggtcaa
     1861 ttcaaatgtt ctaaatgtgg tcagtccttt aacagccagt ccgagttaga caaccacaat
     1921 aaaaaccagc atggggcata gccccttttt tatccatcat cgatttaaat cttggctcga
     1981 cgtgattccg ccgcattttt tatttgtcct agttgtcaca aaaagttcat tgtaaggata
     2041 caggactttc ggccagtcta gtatttagcc ttccgttcta ctgcaatagt gattcaggga
     2101 acgggaccga aacccgagac accctttata cagaagatga taatgaaggc attctatact
     2161 atgatgattt tataattata caagttctgc cttgccgagg ttacattact aatttgtatt
     2221 tttgctttct gccacgcttt tgcaccttcg gcgaatatca caaatccctg tactctggtt
     2281 atccctaatc aggaacttca tcaagtagca tgtcgatctc ttcctgggtt ggttcatctt
     2341 cgcgttcaaa tttagggctg actaatccac tcgctacgtc aatccatatg gagctcccat
     2401 cataattagt aatgtactgc tttggaatat agtacaaatg tacgtttgct acaccttctc
     2461 tcactacgat aaattcattt cctactctgt ctacatcacc tatgtcgata ttgtccgtgg
     2521 ttctcacatg cttatgtatt acatcctccc aaggaattgt tagaatctca cccgattttt
     2581 ctcctttcaa ttccaaatca ggttcctttg ccataaatgg gatgatttcg tgaaaagaag
     2641 tgtatccctc accggtacgt tctgcttctt gaatttctga cggtagcgga ggatctttcc
     2701 tttgatactt gtctttgact tcatcttcca atagtaatac atacaaatct ttgtcgtgct
     2761 ccttaaagtg caacttagga acaaaatatc gtttatcgcc atcttttaat tccacgaatt
     2821 ctggcgttat acttttgact ttacccacgt ctttaccatc aaacgacttt acctttttgt
     2881 ctattagtct tttgcccgaa atttttacgt tagtcattcg tacaatggtt atgcaatatc
     2941 agatttaatg atttgagttc tttgtttata tttaatgttg gccattacag tacatgcctg
     3001 aagaaaacat tgaaggaccc acagtcatgt ggacggagct tgatgacgca aaggtaaaaa
     3061 ctaatgatgg taaaaaactt ggtaaaataa aaaaaatatc tcagaatcat ttcagagtcg
     3121 aaaaaggaac tattagcaaa aaaagttttt gggtgccaaa gaacctggca gacgcatatg
     3181 acggtgatta tttgtggtta agtaataatg aagaagaagt ccatgataaa ttcctgtacg
     3241 gggaagaacc ttccgttgat gataagattg ctccgattga aagaataaaa gtagtaaaag
     3301 agaggatggt tggaatatcg accaagccta aggactcttc agatccatac aagaatgtta
     3361 gagacctgaa ataaattaaa ttacaaaaat aaggaatacc atggaacgta agaatcctga
     3421 gtgtgttctc tgtcatcatt cgagggaaga tcatgctatt gatgataaac atgactacgg
     3481 ctactgtcta aagtgtggtt gtaataagta taaagaaatt tagaaatttt attgctgcaa
     3541 ttttacatct tttttgtagt ttgtggttat cagtttcgtt gtgtaatcga cgtgatatga
     3601 attctgatat ttactttatc tttaatacct tccaatttat cagaacggaa aaagtggttg
     3661 atattggtat taagagttaa tgtgcatccc taacttatgg cagatcaaga aatgatacaa
     3721 gaaaaaattg gtgaggcctt ggggttggaa atggcagcgc aaaaggcagt agaggaatta
     3781 gattcacgtg gtttactaga atcagaacat atgaaaaaac tagcgaaaat gagagaggag
     3841 gcaagtgatc aagaggaaga aatgcaacaa ttggtcaaag aactggcaga cagtgatgga
     3901 ttggatccgt ctactataga agaaaaggca gaagaaacag cagagaaagt gtcaaaaata
     3961 atggaaacgt atcttggaga agatccggac acgcaagagg ccttagagtt tttatgttta
     4021 gcagaaggag gagaagtagc gcattatgaa gttctggctg ctgtctccaa ggatgtaaaa
     4081 aataagaagt ttggaacaaa agttagagca atactcaagg aagaaaaacg gcatctggat
     4141 ctatgcacca aactggctaa gagcaatgcc gcttccgagt aaccgtccat ttttttattt
     4201 ttgaccgacg tattaccgct tcaccgcttc tacgttcctt ctttaagtaa cgcataaaat
     4261 cgtatagaaa tgcggaaatt atttatgcat taaccgttgg gtgttgaagt gttaaataac
     4321 ttattgtatt acacttatca tgggagacac tgtcgaagaa gtgaaagatt cagtcgaaga
     4381 tactgttgaa gaagtgaaag agggagttag aaagactgca gagaaaatta cagattctga
     4441 tacatatctg ggttcagatg atgagaagga aaataaagat aatgaagtag gtggaaagga
     4501 tccaatgaat ccagacgata tagcaaaaca tgaaccgact gcggtcaaaa gagataagaa
     4561 tcagggaagt tcaggcgacc cggtttaaat tatccctttt ttaggtatct agtagaagta
     4621 actcatactt atttagtgta caaactggtt ctgaagaaaa aactttactc aaagagtagt
     4681 gtcaagagta aaatcgataa tcaaatcaag agtaaaatgg ataatcaaaa cctatgacat
     4741 caatacagac ttaaattgat caattttgta gtaggcaatt caccatgggc gaaataataa
     4801 ggaagacaaa taaggaacct agacgcagtt tcagaactgc tgctgttgcc ctgggtatat
     4861 caattatatc agatgctctc gattacttgg ccgctccact atttagtacc ccagtaatcg
     4921 gcgacgtgtt tgatgttata acaactggca ttttgtattc gataactaaa agtaaggtat
     4981 cagttgttat gaacctcgct gaatttatac cgtttgtagg agactttctg cctgtttata
     5041 cagtatctac attaatctgg atagtgcgag agtatggtta cgaatcatca attagaaagt
     5101 tactgggaat gatatcaaat aaacgctgag aagaaagggt aaaaagcgaa agagtagatt
     5161 ttcaacagct gaacatcaag atccggaaat tcaggccgag ataaacaaag gcagtacagt
     5221 tagaattata cggacacctg atgggtccaa ggagaggctg aaaccaatat ggttgatcta
     5281 gtttacgtta caattaaaca tgaacaataa aaaataaaaa agttaaaagt taactattac
     5341 tgcctgccat gttgttttca attagcagag gtaacatttg gctgcaggtc caagtcattg
     5401 tcatgagact cgatggcttg gtctaatttc atacgcaacg ttttcaggtc tcgataatgt
     5461 gtgttttcaa caatatcctg ggcccattcc tccatctcct tgtcggatat taatggaagg
     5521 tctgttctaa tgcgagtcat ggcagtacaa cggactcatt acttattacg atttaatgtt
     5581 ctttttcgta agtatccaat tttttattta ctggaatttt catgttagta acattagata
     5641 atatacaatg tctatttgat gttataatat gggacattga ataaaggtat taaattccat
     5701 caataaatca taattaagtt acaatgatgg gcccagactg gtatgagatg ggcccaccag
     5761 ggtgtttata actatttatt cctaccagtt caatagtcaa taaattataa aaaagttaaa
     5821 gcctaacgag aaggcagaat cggctagaaa aatagattct tcccctgtca gaccttttaa
     5881 aagaaggaat taatggtaag aaatgggaaa taaagaattt tcttgatcga gttcagttag
     5941 gttgattata cttactctcg tcggtaatct cttaaactgt ccctgactgc attttgatat
     6001 gcctttgcat agttcgcatt taaccgtgaa aattctattg cattatttct tgcatgctgc
     6061 attgttgttt tccaggactc catgcttgca aacatgaagt tgtttgctaa tcttgttgct
     6121 gctattgtac tatctgtgat attgctgact gctcttgtat aattttctgt cattctattc
     6181 ggtgaggccc aatatgacca gtacgtattc tgcacgtttt ccatgtacgg cacccataat
     6241 gattggtacg aattgatgac ctgtttttgc gactccagaa agtcttctgc aatatctctt
     6301 gtcgcttcga tggattcctc ttgatattca ttcatggcct tcgtaaattg tggaacctgc
     6361 ttttttgctt cttctgttgt cttgtgtact gatgatttag tttcgtccaa agtgatgtta
     6421 atgttttccc taacttcttt atttttttcg gccgctaatt tttctatttc ctttttctcg
     6481 gcttctgttg gtaacatttc ttttaatttt tcagtttcct ctttttcttt ctgcctattt
     6541 gacgacatgt acctattcgc tgcacaaaat attatttata agttgaattt tagtcgaacg
     6601 gattgaaaaa gaaaaagatt tagagattaa agcagaacta aaaaaggtaa tactgttaga
     6661 attatacagg cctgatgggt ccaaggagag gctgaaacca atatgtcgag gacccatcag
     6721 ccgattgaga ttttgga
//
LOCUS       DASUMD010000032         6123 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_671868, whole genome shotgun sequence.
ACCESSION   DASUMD010000032 DASUMD010000000
VERSION     DASUMD010000032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6123
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_671868"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            160..1002
                     /locus_tag="VFX26_00760"
     CDS             160..1002
                     /locus_tag="VFX26_00760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase family
                     protein"
                     /protein_id="HEX5573035.1"
                     /translation="MTKMLKEVLQKKLDITELEKLSSSFDIIGTIAIIKIPETLTSKK
                     KLIADTLIEEIKPLKTVYCQVSAIEGDYRLRKLELISGENSSITIYREHGCTFKVDVI
                     NTYFSPRLATERLRISKLIEPNEVIVNMFGGVGTFSIIISRSNKSSKIYSIDSNPMAH
                     DICRQNIEINKLTGKVIPILGDAKEEIYNKLRGIATRVLMPLPEKARDFVDAAVSSLA
                     NSKGIVHYFSHVGAENKKNAIQIGIKDTSESFSNFNHMIRNIRVVREVGPRFYQIVSD
                     VEII"
     gene            complement(1236..1733)
                     /gene="rimI"
                     /locus_tag="VFX26_00765"
     CDS             complement(1236..1733)
                     /gene="rimI"
                     /locus_tag="VFX26_00765"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: protein motif:HMM:TIGR01575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008999 -
                     peptide-alanine-alpha-N-acetyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HEX5573036.1"
                     /translation="MQSCLRKNEDYVFYRCGTENLHSVIEINLNSLPEHYTEYFFESI
                     LKELPESFIVAEFGEKIIGYVMCKIEFGFSNFRKLGFVKKGHVVSIAILEEHRGKRVG
                     TILMEEAINGLVSRRTEEVYLEVRVSNSAAIKMYEKLNFKVRSRLKSYYRDGEDAYLM
                     ALELS"
     gene            complement(1808..2917)
                     /locus_tag="VFX26_00770"
     CDS             complement(1808..2917)
                     /locus_tag="VFX26_00770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573037.1"
                     /translation="MPELWLNYGSTDIIVDLKVENLSLIENSRFDTRNTETLDQEIES
                     IPIADTTTLVPLDTSNSTVQLTSRLIALAETRGFKISIESIPSTRRQLSNRIQNQSIG
                     LLEKNSEHFHKLINEKSTIFISKTNIDPFFGYCGTPITLLREFEQEKMNEAFQSRTDN
                     FPHPAVIGPPLEIANKICEEMNAMSVEIISNNSGINNFFYGEILQSFTSAIKKLDSLV
                     IENEQELKSLIVGTNIDTNSSLTLSSSLDLLWNSVNVLKRNAIVVIISENNKGFGVKA
                     IEKFAYGEIKLGDYKNSSYLEGLEHIMFINELKEKYNIAILSALPKYYLKEIFGLKVF
                     SNIQEAADKVLEMNGKSHRISIIQDPNIAIFKKHD"
     gene            complement(2962..3525)
                     /locus_tag="VFX26_00775"
     CDS             complement(2962..3525)
                     /locus_tag="VFX26_00775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TATA-box-binding protein"
                     /protein_id="HEX5573038.1"
                     /translation="MPETKPIVSIENVVASATVNQTVNLNLITQIFPDVEYHPDQFPG
                     LVFRLKSPKTATLIFSSGKMVCTGAKSEEQAIKAVKNVVQKLRKGSIPIENEPQIEIQ
                     NIVASASLGGKIHLELAARVLPRSMYEPEQFPGLIHRMLDPKTVILLFASGKLVCTGA
                     KKESEVYRAVHNLHDLLEEKNLMIYEG"
     gene            complement(3635..3988)
                     /gene="pth2"
                     /locus_tag="VFX26_00780"
     CDS             complement(3635..3988)
                     /gene="pth2"
                     /locus_tag="VFX26_00780"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-tRNA hydrolase Pth2"
                     /protein_id="HEX5573039.1"
                     /translation="MEFKQVIVVRKDLRMGIGKIASQVGHAAVLGVEQSRKLNKLWLR
                     SWFNEGQPKIVVKVNSLEELLQVQRDAEELRISSVMVQDRGLTQIPTGTLTCIGIGPA
                     PSDIIDKVTSELKLL"
     gene            4036..5202
                     /locus_tag="VFX26_00785"
     CDS             4036..5202
                     /locus_tag="VFX26_00785"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEX5573040.1"
                     /translation="MEYCDVLIAGGSVGGLTTARECSSNGPSTIVIEEDHEIGTPEHC
                     GGMVSLGGLQKLGLIVDSNNFQNAVSKARISSKSTSFEIPAEKQSVIVVDRRGLDKQI
                     AKQAQDAGAEIRTRCSFKTLSKNQSTYIVKTSDGEIECKYFVDAKGLGSLKDASNNGI
                     LASAQFEIYANWIDGKTVEILFDSDRYPGFFVWIIPTGEGKGKIGVAGKGINTLVALN
                     EFINSRGKKYSIIRKIFAPIWIGGPRPPFVQERTLVVGDAAGQTKPTTAGGIFSCGMA
                     GILAGKAISKAIENNDNALLFEYEKSWKSMFWNEFNAMLLARRVLERLDNKSIDSIFS
                     SLSKRAINDVSNFSDFDFHSSALDLFLKTRIATNLTKILIGNEFRRVFSTKKDS"
     gene            5294..5488
                     /locus_tag="VFX26_00790"
     CDS             5294..5488
                     /locus_tag="VFX26_00790"
                     /inference="COORDINATES: protein motif:HMM:NF011481.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc finger domain-containing protein"
                     /protein_id="HEX5573041.1"
                     /translation="MNQLFVSKSLQLPVCTSCSRPIIANDECVKYYCPNCGYVLIWRC
                     QSCRQFARSYKCIGCGFEGP"
     gene            5491..5772
                     /locus_tag="VFX26_00795"
     CDS             5491..5772
                     /locus_tag="VFX26_00795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 1-beta"
                     /protein_id="HEX5573042.1"
                     /translation="MTKLVARIKILPSESDSDIDSIPKILNETLPEGFKLLAHKKEPI
                     AFGLNSVLADFTLDDAEGQMELLEESIRKVEAVGEIEVINVSRQSVNIK"
     gene            complement(5850..>6123)
                     /locus_tag="VFX26_00800"
     CDS             complement(5850..>6123)
                     /locus_tag="VFX26_00800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="protoheme IX farnesyltransferase"
                     /protein_id="HEX5573043.1"
                     /translation="VLIGNEKTAGYIFANTAILLPYSLSLYLFGLGVLYFITAAISGS
                     LMLVYHYKLTKYPNPDFAWKAYKITAPYLVVIFVSLAFDSLFYYRF"
BASE COUNT         2007 a         1038 c         1137 g         1941 t
ORIGIN      
        1 gatactggaa tgaataagtt tcttgagaac ttgtccataa cgtacagacg tgatgaaaat
       61 acagggcgac caagaataaa taaattgggt ggaagattgg atagggctca aaaaaattcc
      121 ggcgattact acaagaggac ttgacggatt agtcaaaaaa tgacaaaaat gttaaaagaa
      181 gtattgcaaa aaaaacttga tattacagaa ctcgaaaagc tgtcttcttc atttgatatc
      241 ataggcacta ttgcaataat caaaattcca gaaacactaa cctcaaaaaa gaaattgatt
      301 gcagatacat tgattgagga aattaagcca ttaaaaacgg tatactgtca agtatcagca
      361 attgaaggag attatagatt gaggaagttg gaattgatat ctggcgaaaa ctcgtcaatt
      421 accatttata gggaacatgg atgtactttt aaagtagatg taatcaatac ttacttttcg
      481 ccaagactag caaccgaacg attgaggata tcgaaattga ttgaaccaaa tgaagtgatt
      541 gtaaatatgt ttggaggtgt gggaacgttt tcgatcataa tatcacgtag taacaagtcg
      601 tctaaaattt attcaataga ttcaaatcca atggctcatg acatatgcag gcagaatatt
      661 gaaataaata aattgacggg taaggttatt cctattcttg gtgatgctaa ggaggagata
      721 tacaacaaac ttagagggat tgccacccgg gtgttaatgc ctctaccgga aaaagcaaga
      781 gattttgtag atgctgcagt aagttcactt gcaaatagca aaggtattgt acactatttt
      841 tctcatgtgg gggcagagaa taagaaaaat gccatacaga ttggaatcaa ggatacttca
      901 gaatcattta gtaactttaa ccacatgata agaaatatca gagtcgtaag agaggtagga
      961 cctcgatttt atcaaatcgt ctctgatgta gaaataattt aagtaaaact catttgtctg
     1021 ggggtgcaga agccattgtg taacccatcc aaatgagcac ggtcatgaga attcctacaa
     1081 tgattattaa tgtcgacttc atcacaagaa tatccaaatg tgtaaataac aacaagtatg
     1141 aaaaaaatat gaaaaatatt gacggaacta tgagcaatat tagtccaatt atcttgtttt
     1201 gtttcataat actggttgca ccctactaat cccactcatg ataattctaa tgccatcaag
     1261 taggcatctt ccccatctct atagtaagat ttcagccttg acctcacttt aaaatttagt
     1321 ttttcataca tttttattgc agcagaattg ctaaccctta cttccagata gacctcttct
     1381 gttcgtcttg acacaagtcc atttattgct tcttccataa gtatggtgcc aaccctcttc
     1441 cctcgatgtt cttctagtat ggcaatggaa actacatgtc ccttttttac aaaacctaat
     1501 tttctaaaat tcgaaaatcc aaattcaatt ttgcacatta catatccaat gattttttca
     1561 ccaaattctg caacaataaa tgattcaggt aattctttaa ggattgattc aaaaaaatat
     1621 tcagtataat gttcaggaag tgagttcaaa ttaatctcta ttaccgaatg taggttctct
     1681 gtaccgcacc tgtagaagac ataatcttca tttttgcgta agcagctctg caaattatca
     1741 aataaatgat ctttaattat tttaactttg ggtttccatg aaacttagtt tgtactaatt
     1801 gtcaaatcta gtcatgtttt ttgaatattg caatatttgg atcttgtatt attgaaatcc
     1861 tatgactttt tccattcatt tcaagtactt tatcggctgc ttcttgaata ttagaaaaca
     1921 ccttaaggcc aaatatttcc ttcaggtaat actttggtaa cgctgaaaga atggctatat
     1981 tatatttctc tttcagttca ttgataaaca tgatatgttc caatccttca aggtatgaag
     2041 aattcttgta gtctcctagt tttatttctc cataagcaaa tttttcaatt gctttaaccc
     2101 caaatccctt attattttct gaaataatta ctactatcgc attccttttg agaacattga
     2161 ctgaattcca caataaatcc agagagcttg ataaggtcaa acttgaattc gtatcaatat
     2221 tcgtccccac tatcagagat tttagctcct gttcattttc tattacaagg ctatcaagtt
     2281 tcttaattgc gctagtaaaa gactggagta tctcgccata aaaaaaattg ttaattccgc
     2341 tattattcga aataatttca acagacatcg cattcatctc ttcacatatc ttgtttgcta
     2401 tttctagagg aggtccgatc accgctggat gaggaaagtt atctgttctg gattggaacg
     2461 cttcattcat cttttcctgt tcaaattcgc gtaagagagt gataggtgtc ccacaataac
     2521 caaaaaaagg gtcaatgttt gttttagaaa taaaaatagt gcttttttca tttatgagct
     2581 tatgaaaatg ttcactattc ttttcaagca gaccaatact ttggttttgt atcctgttcg
     2641 ataattgcct tctcgtgctc ggaattgatt caatagatat tttaaatcct ctcgtctctg
     2701 ccagagcaat taatctagaa gtaagttgaa ctgtagaatt tgatgtatca agagggacaa
     2761 gtgtcgtagt atcagctata ggaatagact caatctcttg atctaaggtt tcagtattac
     2821 gtgtatcaaa tcttgaattt tcaataagtg aaagattctc tactttgaga tctactataa
     2881 tgtcagtact accataatta agccataatt caggcatttt cgaatcgaat catgaaaata
     2941 cgccaatgaa ttaaagaaaa tttaaccttc atagatcatt agattttttt cttcgagtaa
     3001 atcatgtaaa ttgtgaaccg ccctgtatac ttctgattct tttttggctc cagtacatac
     3061 taattttcca ctcgcaaata gaaggatgac agttttagga tcaagcatcc tgtgaatcag
     3121 acctggaaat tgttcaggtt catacatact acgaggcaaa actcgcgcag ccagttctaa
     3181 atggattttg ccacctagac ttgcggaggc tacaatattc tgtatctcta tttgtggttc
     3241 attttctata ggaatgctgc cttttcggag tttttgtacc acgtttttta ccgccttaat
     3301 tgcctgttct tctgattttg ctccagtgca taccattttt cctgaactga aaatcaatgt
     3361 tgcagttttg ggtgatttta gtctaaacac aagtcccgga aattgatctg ggtggtattc
     3421 gacatcaggg aatatttgag ttattagatt aagatttaca gtttgattga cagtggcaga
     3481 agcaacaaca ttctctatgc taacaatggg cttagtttca ggcatactag gttggcttta
     3541 taaatggaag tatatataca tgtttggaac actagtcaaa ttacacagga tataaaaaca
     3601 ccgagtaaaa taattcaaaa ttatcaccgc attgttagag taatttaagt tcagaagtca
     3661 ctttatcaat aatatctgat ggagcaggac caattccaat acatgtcagc gtacccgtgg
     3721 gaatttgggt cagacctcta tcctgtacca tgactgacga aatcctgagt tcttcagcat
     3781 ctctttgtac ctggaggagt tcttccaaac tgttcacttt aacaactatc tttggttgtc
     3841 cttcattgaa ccaacttctt agccataatt tattcaattt tctggattgt tcaacgccaa
     3901 ggacggctgc atgaccaacc tgggatgcta ttttacctat ccccatgcga agatcttttc
     3961 ttacaacaat gacttgttta aattccacta caggttagtt aataaaatga tgaaataatt
     4021 gtttccttat aggatatgga atactgtgat gtattaattg cgggagggag cgtaggagga
     4081 cttacaacag caagagaatg ttcatcaaat ggaccgtcca ctattgttat agaagaagat
     4141 catgaaattg gaacgccaga acactgtgga gggatggtca gcctaggggg gctgcaaaaa
     4201 ttaggtctta tagtggactc aaataacttt caaaatgcag tctcaaaggc caggattagt
     4261 tcgaaatcta ctagttttga gatacctgct gaaaaacaaa gtgttattgt agtggatcgc
     4321 agaggactgg acaaacaaat tgctaaacaa gcacaagacg ccggtgctga aatacgaact
     4381 agatgctctt ttaagaccct atctaagaat cagtccacct atatcgtaaa gacctcagat
     4441 ggagaaattg aatgtaaata ctttgttgat gcaaaaggac tgggttctct gaaggacgcc
     4501 agtaataatg gcattttggc ttcagctcaa tttgaaatat atgcaaattg gattgatggt
     4561 aaaacagtag agatcctatt tgattctgat agatatccgg ggttttttgt ttggataatt
     4621 ccaacaggtg aagggaaggg caaaatagga gttgcaggaa aaggaatcaa cacacttgtt
     4681 gcattgaatg aattcataaa ttctagggga aagaaatatt ctataatcag gaaaatcttt
     4741 gcgcctattt ggattggagg tccaagaccg ccttttgtcc aagagagaac tcttgttgtg
     4801 ggggatgccg ctggacaaac taaaccaacc acggcgggag gaatttttag ttgcgggatg
     4861 gcgggtatct tagcaggtaa agcaatctct aaagcaatag aaaataatga taatgcgttg
     4921 ctattcgaat atgaaaaaag ctggaaatct atgttttgga atgaattcaa cgctatgttg
     4981 cttgcaagga gggtgctgga aaggctggat aataagtcca ttgattcgat tttctcctct
     5041 ttgtctaaaa gggcgattaa tgatgtttct aatttttcgg attttgattt tcattctagt
     5101 gccctagatc tttttcttaa aacaagaata gctactaatc taacaaaaat attgattggt
     5161 aatgaatttc ggagagtttt cagtaccaag aaggacagtt aagatatcaa gtttctatca
     5221 atttatagtt aaactttggg tgaaaaaaca gttttcatgt acaatctttc aagcaaaata
     5281 taaattcgga ttaatgaatc agctttttgt gtcaaaatca ttacaattgc ctgtttgtac
     5341 ttcctgtagc aggccaataa ttgcaaacga cgagtgtgta aaatactact gccctaattg
     5401 tggttatgta ttaatttggc gatgtcagag ttgcagacaa tttgctaggt catacaagtg
     5461 tattgggtgt gggtttgaag gtccatagta ttgaccaaat tagttgctag aattaagatt
     5521 cttccttctg aatcagattc ggacatagat tcaattccta aaattttgaa tgaaacgctt
     5581 ccagaagggt tcaaactgct agcacataaa aaagaaccaa tagctttcgg actaaattcc
     5641 gttctggctg attttacact ggatgacgca gagggtcaaa tggaattatt agaagaatct
     5701 ataagaaaag tagaggcagt aggagaaata gaagtaataa acgtaagcag acagtcagtc
     5761 aatataaaat aaaaaaacag caattatcga tatacccact tcatgctggt actaaaaacc
     5821 atatgatttt gatgttttgg agtacgttat caaaacctat agtagaatag agaatcaaat
     5881 gcgagtgaca caaaaataac gaccaaatat ggtgctgtta tcttgtatgc cttccatgca
     5941 aaatcgggat ttggatactt tgttaattta taatggtata ctagcatcaa cgaccctgat
     6001 attgccgcag taataaaata cagtactcct aaaccgaaaa gatataatga taacgagtag
     6061 ggtaacagaa tagcagtgtt cgcaaaaata tatcctgctg ttttttcgtt acctataaga
     6121 acg
//
LOCUS       DASUMD010000033         6350 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_561099, whole genome shotgun sequence.
ACCESSION   DASUMD010000033 DASUMD010000000
VERSION     DASUMD010000033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6350)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6350)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6350
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_561099"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..378
                     /locus_tag="VFX26_00805"
     CDS             <1..378
                     /locus_tag="VFX26_00805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573044.1"
                     /translation="KGKEIISFRTRNIMASMKKDFVVARIEAAQDGSPYVYVGFSDPN
                     DYKNEKPVNPFGSNVMAFSSPEDMMKNLPKAMGNISRMMTGGGASDSPTFKISVREYE
                     DIGIRVGDRVTIEIRKADNNLYT"
     gene            475..1662
                     /locus_tag="VFX26_00810"
     CDS             475..1662
                     /locus_tag="VFX26_00810"
                     /EC_number="2.7.2.3"
                     /inference="COORDINATES: protein motif:HMM:NF012389.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004618 - phosphoglycerate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HEX5573045.1"
                     /translation="MLRSVSDLDDIQFYGKKVLVRVDFNVTIDNGAVTEDYRIRSAIP
                     TIEYLVKRGAKVILASHLGRPKFRDHNNSLAPVATRLKEILNRNVDFVEDCIGSQVSS
                     KIENLRYGNILLLENLRYYSEEQNNDPEFSESISSLADIYVNDAFSTCHRKHASTYGA
                     VKNFDIRLAGFSLKKEIEYLSMIRYNPRKPFTLVVGGSKIKDKIGALENLLPKADKLL
                     IGGGAAYTFLKAKGFKIGNSLFDEEHFDWVKNALSSYGEKILLPVDHVVSSEENSFST
                     VTGDIPDGMCGFDIGNETSKIYSSEIGGNGVGTIFWNGPMGMFEVGQFANGTINVAKS
                     MALAFWRGAMTLVGGGDTIAALKKSAVSESEVTHLSTGGGATLRFLAGDKMPGIEALE
                     RAN"
     gene            complement(1664..3277)
                     /locus_tag="VFX26_00815"
     CDS             complement(1664..3277)
                     /locus_tag="VFX26_00815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573046.1"
                     /translation="MFRTRTNAKAELLCLILTITILFIVVGFNLSVNNNLFAQSDQFS
                     QFENASKNQAILRFQTQFCGMNSTQHSNSFISEYSLPQKCEMPLGILADNDSIWYVSS
                     KLGHLGKLNIKDNNSQEFTIPVWDSRSKPTDISQTWDVKSDSKGNIWFTDEKQNGIWR
                     YAQDNNSFSFFPVPERPSAFGTIYPASIVFNDDEIYFAGIRSKSLWFANVSDLKNNSS
                     EGISNISLPLSSFKGIDPDLVSTGSIEIDRDRNVLWISMLAFGVKGQLFKFDLSSRTF
                     TPFDLPQHLDSPVGISIDEKGNPWITDHGTSIFFMVNSTDGKVTEFSTSPLSRISANI
                     PKDFSYTLPYWIKMDSTGNLWFNEHVGNKIARFNTTDGTLVEYWIPTQNNLWAPCAPN
                     ESSCGISNALQFSIGKNNQIWFSEWTENKLGMLNGSKPPSFVVGTSSPKYNVKRGDTI
                     EIPVIISAKGQVNLKMIASSTFTSTGNFGNSSISFSQDSFSMNPGETKNVTFLVTPSD
                     ELANGDYTIMVGAENEELSYLKSIKVHIS"
     gene            3394..3792
                     /locus_tag="VFX26_00820"
     CDS             3394..3792
                     /locus_tag="VFX26_00820"
                     /inference="COORDINATES: protein motif:HMM:TIGR00149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="secondary thiamine-phosphate synthase enzyme
                     YjbQ"
                     /protein_id="HEX5573047.1"
                     /translation="MTFHTEKRLKFINITQEIEKIVRESAVNEGICLVNSMHITSSVF
                     INDDETGLLQDFEKWLENIAPHAPAEQYLHNDTGEDNADAHLKRQIMGRETVIAITKG
                     KLDFGPWEQIFYGEFDGCRNKRILVKVIGE"
     gene            3879..5267
                     /locus_tag="VFX26_00825"
     CDS             3879..5267
                     /locus_tag="VFX26_00825"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HEX5573048.1"
                     /translation="MESYRLDKDSLGEVKVPSNAYYGPFTVRASNQYKVTGQKPHLSM
                     IRAFAMIKRSAALANRDLNILPAEKADAIVKACDEILSGNLLDQFIVDTINSGAGTAF
                     NMNINEVIANRALEISGHNIGDYSFMNPNDDVNMSQSSNDTFPTAMHIALLMNMKGVT
                     DSLRSLIMALEKKGQEFREVMKIGRTHLMDALPVTLGMEFDVYAFSLKRGLNKVLDVC
                     ADLEYVGLGGTAVGTGANTPSGYNKLVIKYLSQISGLSLKPSQNFFFSLQSKFEITMC
                     SSILRNIAIELIKMSNDIRLMASGPISGLSEITIPAVHAGSSIMPGKVNPSLSECLNM
                     ICFIIVGNDVSVALAAQAGQFELNVMLPGMIKDMLESTDMLKNFLSVFASNMIDGLKA
                     NEQKLESLVEKSPILVTLLNSHIGYLKASEIYKESMATNKSIKELILEKGLMTKEELD
                     NALSKKNILGLK"
     gene            5309..5698
                     /locus_tag="VFX26_00830"
     CDS             5309..5698
                     /locus_tag="VFX26_00830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573049.1"
                     /translation="MIDKRILITLSFGILVTIIVFSGIQDSQNRPSLSRLPISPDIAI
                     LRVVNSFNLSENQIEKSPQYVYVKSDGKVYESNPQLNDVGKNIGITGPTKTGGSHFAW
                     EIIDFERKQKYYVDSVIAEIISNSSYK"
     gene            6035..6286
                     /locus_tag="VFX26_00835"
     CDS             6035..6286
                     /locus_tag="VFX26_00835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573050.1"
                     /translation="MQSHKFGNENIQATLVCPKCDEVFKKEFPLDLEGQITEFKCPVC
                     SSASEADLPSKGLEQREEFEGDLYEVGEENIEEEFDESY"
BASE COUNT         2127 a         1038 c         1263 g         1922 t
ORIGIN      
        1 aagggaaagg aaattatatc ctttaggaca agaaatatta tggcaagtat gaaaaaagac
       61 tttgttgttg cacgcataga agctgcacag gatggaagtc cttacgtata cgttggtttt
      121 agtgatccta atgattacaa gaacgaaaaa ccagtaaatc catttggctc aaacgttatg
      181 gcattttcgt ctccagaaga catgatgaaa aatctcccaa aagcaatggg aaatatatca
      241 agaatgatga caggtggggg cgctagtgat tccccaacat tcaagattag tgtaagggag
      301 tatgaagata ttggaattag agtaggcgat agagttacaa tagaaattag aaaagcggat
      361 aacaatcttt acacttagtt taatatagaa aaactctgtt taactcattc ggattgtgaa
      421 agtgggagaa aagtttatcc tactagccca taaaatcctt atttgtaaaa ataattgctc
      481 agatctgtat cagaccttga tgacattcaa ttctacggaa agaaagtttt agtcagggta
      541 gactttaacg taactattga caatggtgca gtaactgagg actatcgaat tagaagtgca
      601 attccaacta tcgaatatct cgtaaaaaga ggagctaaag tgattttggc ttcccatttg
      661 gggagaccta aattccgtga tcataataat tcacttgccc cggtagcgac aagattgaag
      721 gaaatactca atagaaatgt tgacttcgtc gaagattgca taggtagcca agtgagtagc
      781 aagatagaga atcttaggta tgggaatata ttgctattag agaatttaag atactattct
      841 gaagagcaga acaatgatcc tgaattttca gagtccatat catccttggc tgatatatat
      901 gtaaatgatg cttttagtac atgtcataga aaacatgcct ccacatacgg agctgtaaaa
      961 aattttgata ttcgcttagc tggatttagt ttgaaaaagg aaatagaata tctttccatg
     1021 ataagatata atccaagaaa gccatttact ttggtggtag gaggttccaa gattaaagat
     1081 aagattgggg ctctggaaaa tttgctgcca aaggcagaca aattactaat tggtggcgga
     1141 gcggcttata catttctcaa ggcaaaggga ttcaagattg gtaattcatt atttgatgag
     1201 gaacattttg attgggtgaa gaacgcactt tcttcctatg gtgagaaaat tttacttcca
     1261 gtggatcacg tagtctcctc tgaggagaac tcgttttcaa ctgttactgg cgatataccg
     1321 gatgggatgt gtggatttga tatcggtaac gaaacatcca agatttattc ttcagaaata
     1381 ggcggaaacg gagttggtac tattttttgg aatggtccga tgggaatgtt tgaagtggga
     1441 caatttgcaa acggaacgat aaatgtagca aagagtatgg ctcttgcttt ttggagagga
     1501 gcgatgacac ttgtcggtgg tggtgacacg attgcagccc tgaaaaaatc tgccgtatcg
     1561 gaaagcgaag tgacccactt atcaactggg ggtggagcaa ccttgagatt tttggctgga
     1621 gataaaatgc ccgggattga agctcttgaa agggctaact agattatgaa atatgcactt
     1681 ttattgattt taggtatgat aattcttcat tttctgctcc taccataata gtataatctc
     1741 cgttggcaag ttcatctgaa ggagtaacta aaaacgtaac attctttgtt tcgccaggat
     1801 tcattgaaaa tgaatcctgg ctaaatgaaa tcgatgagtt gccaaagttt cctgtacttg
     1861 tgaaggtgga tgacgcaatc attttgaggt tgacttggcc ctttgctgat atgatcacag
     1921 gtatttcaat agtatctcct ctctttacat tgtactttgg ggagctagtg cccacaacaa
     1981 atgatggagg ttttgaacca tttaacatgc ctagtttatt ttctgtccat tctgaaaacc
     2041 atatttggtt attttttcct atcgaaaact gaagagcatt agaaatccca caagagcttt
     2101 catttggagc acagggagcc cataagttat tttgtgtagg tatccaatac tcaacaagtg
     2161 ttccatctgt agtgttgaat cttgcaatct tgttaccaac atgctcattg aaccagagat
     2221 ttcccgttga atccatcttt atccagtaag gcaatgtgta gctgaaatct tttggaatat
     2281 tagcagagat tctggaaagt ggtgaagtac taaattctgt aactttgcca tctgttgaat
     2341 taaccataaa gaatatgctg gttccgtgat cagtaatcca aggatttccc ttttcatcta
     2401 tagaaattcc taccggcgaa tcaaggtgtt gaggaagatc aaatggcgta aatgttcttg
     2461 aagataaatc aaacttgaat aattggcctt taactccaaa cgcaagcatc gaaatccaca
     2521 aaacattccg atccctgtct atctcaattg agcccgtact gacaagatct ggatctatac
     2581 ctttgaaaga agatagcggt agagaaatat ttgaaatacc ttcagatgaa ttatttttca
     2641 agtctgacac atttgcaaac caaagcgatt ttgatctaat accagcaaaa taaatttcat
     2701 catcgttaaa tactattgaa gcaggataaa tggtgccaaa tgctgaagga cgttcgggga
     2761 ccggaaaaaa gctaaaacta ttattatctt gtgcatatcg ccatattcca ttttgctttt
     2821 catcagtaaa ccagatattg ccttttgagt ccgatttaac gtcccatgtt tgtgaaatat
     2881 cggtcggctt tgaacgacta tcccagacag gaattgtaaa ttcctgacta ttgttatcct
     2941 taatatttaa cttgccaaga tgacctaatt ttgaggatac ataccatatt gagtcattat
     3001 ccgctagaat gccaaggggc atctcgcact tctgagggag tgaatactca gagatgaaag
     3061 aattgctatg ctgagtagaa ttcattccgc aaaattgtgt ttgaaatcgc aaaatcgcct
     3121 gattttttga agcattctca aactgagaaa attgatctga ttgggcgaat aaattattgt
     3181 ttacactcaa gttaaaacct accacaataa acagtattgt aatggtgagt atcaaacaga
     3241 gtaactcagc tttagcatta gttcgagtcc tgaacatact ttagcgactt gaaatatcaa
     3301 gagatctaat aagagttttt ttattcacct gcccttgaat aatttaaata ataaacgcaa
     3361 ttttttagta acatgaagtc aattacaaaa tatttgactt ttcatactga aaagagactt
     3421 aaatttataa acataacgca agagatagaa aaaattgtac gtgagtccgc tgttaatgaa
     3481 ggtatttgtc tggttaattc gatgcatata acgtctagtg tttttataaa tgacgatgaa
     3541 acaggtttgc ttcaggattt tgagaaatgg cttgagaata tagctcccca tgctcctgca
     3601 gaacagtact tgcacaatga tactggagaa gataacgctg atgctcactt aaaacgtcag
     3661 ataatgggcc gagaaacagt aattgccatt acaaaaggta agctagattt tgggccttgg
     3721 gagcaaattt tttatgggga atttgatgga tgccgcaaca agcgaatcct agtcaaagtc
     3781 ataggggagt aaattcaaac tttcattcac tattacaaat gttgtccttt atgcattgag
     3841 tcgattgatt tattagataa acgctggttt tcgtatttat ggagtcgtac cgtcttgata
     3901 aagattctct aggagaggtc aaagttccat ctaatgctta ttatggacca tttacggtta
     3961 gagcttctaa ccaatacaaa gtaacaggtc agaaacctca tctaagcatg ataagggcat
     4021 ttgcaatgat aaaacgatca gcagcacttg caaacagaga tttgaacatt ctgccagcag
     4081 aaaaagctga tgcaatagta aaagcttgtg atgaaatact ctcgggaaat ttacttgacc
     4141 aattcatagt tgatacaatc aattcaggtg caggaacagc atttaacatg aatattaatg
     4201 aagtaattgc aaatagagct cttgaaatta gcggtcataa tattggcgat tattccttca
     4261 tgaatcccaa cgatgatgta aatatgtcac aatctagtaa cgatactttt ccaacagcga
     4321 tgcatatcgc attattgatg aatatgaaag gagttacaga ttcacttagg tcacttatta
     4381 tggctcttga aaaaaaaggt caggaattta gagaggttat gaaaattggt cgaacgcacc
     4441 ttatggatgc tttaccagtc acgttaggta tggaatttga tgtatatgct ttttctctta
     4501 aaagaggcct aaataaagtc ctggatgtat gtgctgactt agaatatgtt ggactaggtg
     4561 gaaccgctgt tggtacgggg gccaatacac cttctggata taataaacta gttatcaagt
     4621 atctatccca gatatctgga ttaagtttaa aaccttctca gaattttttc ttttctttac
     4681 aaagtaaatt tgagataaca atgtgttctt ctattctgag aaacattgca attgagttaa
     4741 taaaaatgtc aaatgatatt agattgatgg catcgggtcc tatatcagga ttatcagaaa
     4801 ttacaattcc agcggtacat gctggatcgt ctataatgcc tggtaaagta aatccttcac
     4861 tatcagaatg tcttaacatg atatgtttta ttatagtagg aaacgatgtt tcggttgctc
     4921 ttgctgctca ggcaggtcaa tttgaattaa atgtaatgtt acctggaatg ataaaagaca
     4981 tgttagagtc aaccgatatg ttaaaaaatt ttctgtcagt ttttgcaagc aatatgatag
     5041 atggattaaa agcaaatgag cagaaacttg aatcattagt ggaaaaaagt ccaatcttgg
     5101 taactctgct caattcccat attggatacc tcaaagcatc ggagatatac aaggagtcaa
     5161 tggcaaccaa taaaagcatt aaagaactga tacttgaaaa aggactcatg acaaaagaag
     5221 aacttgacaa tgccctttca aagaaaaata ttctcggttt aaaataattt tgaaacactg
     5281 gaataaatga aattctgata gaaccaagtt gatagataaa agaatcttaa tcacactttc
     5341 ttttggaata ttagtcacaa ttattgtttt ctccggtatt caggattctc aaaatcgtcc
     5401 ctcgttatct agattgccaa tttcgccaga tattgcgatt ttaagagtgg taaatagctt
     5461 caacctatca gaaaaccaga ttgaaaaatc tccccagtat gtttatgtaa agtctgacgg
     5521 taaagtgtat gaatcaaatc cccaactcaa tgatgtaggt aaaaatattg ggattacagg
     5581 gccaactaag actggcggta gtcattttgc gtgggaaatt attgattttg aaagaaagca
     5641 aaagtactat gttgattcag taatcgccga aataatttcc aattctagtt acaaatgact
     5701 taagtaactt gtaacaattt agaatttcta acagatatta aatctatgtt gccctaactt
     5761 cagtaatgag cgttgaaagt atcacttcgc taaattcatc atattaacga tgtctaaaaa
     5821 ttatgattga ctggtgcgtg ttcggtgaag aaaagcacca accaattgcc taacaatgaa
     5881 ttcaaagata ggcacactgt aacgtactaa gaatctattt aaaatttcta gagtatctaa
     5941 ttcgagcaag taaacttagg taagtcatgt tcttataatc attataaaca ataagtgcaa
     6001 taaagtaaga agaatgacaa agaccctata cctattgcag tcacataagt tcgggaacga
     6061 gaacattcaa gcaaccttag tgtgtccaaa atgcgacgaa gttttcaaaa aagaattccc
     6121 cttagatctc gaaggccaga taacagaatt caaatgtccc gtatgtagtt ctgctagcga
     6181 ggccgatctt ccttccaagg gactcgagca acgagaggaa ttcgaaggcg atctctacga
     6241 ggtgggagag gagaatattg aagaagaatt tgatgaaagt tattgaagta aactaactga
     6301 ttctctgata tccataaagt aaatttttat tatctatttg cgaatattta
//
LOCUS       DASUMD010000034        10680 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_119085, whole genome shotgun sequence.
ACCESSION   DASUMD010000034 DASUMD010000000
VERSION     DASUMD010000034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 10680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10680
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_119085"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            2..159
                     /locus_tag="VFX26_00840"
     tRNA            join(2..35,93..113,145..159)
                     /locus_tag="VFX26_00840"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:32..34,aa:Tyr,seq:gta)
     gene            276..1004
                     /locus_tag="VFX26_00845"
     CDS             276..1004
                     /locus_tag="VFX26_00845"
                     /inference="COORDINATES: protein motif:HMM:NF014090.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VIT1/CCC1 transporter family protein"
                     /protein_id="HEX5573051.1"
                     /translation="MKSTAHVEPHIKESNHIRDFVFGFGDGINTSLGIVAGVGGANSS
                     ADFIILAALVGMFTGAKAMAVQNYLALKSQREILESEIKREEYEMEAYPEKERMEIEE
                     IYRAKDFDEDLVKRVTDKITSNKRVWLKTMLTEELGLNLGIVGNPIKGALIMFASFII
                     GGILPILPYLLSKTGLVPLQFALWIAIAISLTSSFLIGAKKAKLAKKSWVKGGIEMSA
                     LGTGIALLGYGIGAELANANLLNY"
     gene            1024..1728
                     /locus_tag="VFX26_00850"
     CDS             1024..1728
                     /locus_tag="VFX26_00850"
                     /inference="COORDINATES: protein motif:HMM:NF013640.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I 3-dehydroquinate dehydratase"
                     /protein_id="HEX5573052.1"
                     /translation="MVTNKFKVCVSLATDSADKLPKLITRAIQKQADYVEIRFDHTIY
                     KELDYALDISSRIKNRAIFTLRSKDEGGYFDGGHSEHVSLLKKLAGASPMLLDIEISI
                     IKKDKEMRQFLKENKIPILVSSHDFKKTPNLSTLLEKFEDMSKYSNYVKLVTTARTFE
                     DNFKLLSLYDNNTNTKLVAFAMGEHGILSRLLCILYGGSPFTYASLDNPLAPGQLDIV
                     LMKKIYDRIGNNLKSK"
     gene            1725..2570
                     /gene="aroE"
                     /locus_tag="VFX26_00855"
     CDS             1725..2570
                     /gene="aroE"
                     /locus_tag="VFX26_00855"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004764 - shikimate 3-dehydrogenase
                     (NADP+) activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HEX5573053.1"
                     /translation="MSTDFKTYCIIGDPLDHSLSPAIHNAAFNTLGLNCSYIAFRVQE
                     GQLKNSIDSLRSINIGGFNVTMPHKVKVLNYVDRCDKTVQLVGAANTVNNEEGKFCAY
                     NTDVAGFIRPLRKRKVGFNGIEVMILGAGGAARAVVVALSGEKGIANINIFNRNTERS
                     TNLANLVKKLGLNASIISNDDVQKIAYKSDLIVNTTPLGMSNEESLIKSASISKNSIV
                     YDIVYRPINTKLIENAKTAGAQVVYGYEMLLEQATASFKIWLKMDPPIDSMKKVLFGM
                     FGEPT"
     gene            2567..3421
                     /locus_tag="VFX26_00860"
     CDS             2567..3421
                     /locus_tag="VFX26_00860"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: protein motif:HMM:TIGR01920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004765 - shikimate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HEX5573054.1"
                     /translation="MTIKVTSIVHGAISIVNAVATGYGSAMGISLNVKVEIISKKGSG
                     LIFQKGGGSLMIKKIIYDVLQSKYINNNQLLINIKSEVPSGMGLKSSSAVSNAVALAC
                     ISLTNKEISDESVLNSAINASLYAKTTITGAYDDSTACYYGGFVTTDNYKRKIWKREN
                     SPTDISAVIFLPNIKKRGDVTRLKLLSDIYLEAFQLAYSGQYWKAMKLNGVLTSSLLS
                     NSYTITRMCLENGALAASISGNGPAIAAIVRESEVQKIKSVLSNLDGRLIISRTNNQK
                     ASTVREVG"
     gene            3414..4703
                     /gene="aroA"
                     /locus_tag="VFX26_00865"
     CDS             3414..4703
                     /gene="aroA"
                     /locus_tag="VFX26_00865"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: protein motif:HMM:TIGR01356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003866 - 3-phosphoshikimate
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HEX5573055.1"
                     /translation="MGKIVVTRSLLNGNITCPPSKSYTHRAIFISSLANGNSHIINPL
                     ISRDTIATIDACRELGVGIKRTDKGLIVSGKDTLQIPDNVINVENSGTTMRFVTAISS
                     LLNDGYVVITGDDSIRKRPMRPLLAALKQLGVNSFSTRKNGKAPIIVQGRGINGGNIT
                     IDGSISSQFISGILIAGVRAKSGISLSVIGKQVSKSYIQSTLNVMSKFGARVKHSKDY
                     RKYNIFNNRYVPTTFTVPGDFSTASLLLSAGTLVGGEITVSNLDFSLPQGDSKILEIL
                     KKIGAVISIDKRNGTVKTKGIQELDGGEFDLTDTPDLLPVVAILSLKSRNPVRIYGVS
                     HTRYKETDRLKIIASEFRKFGVKTKILPDEITIVSPKKLKSALIDSHNDHRLFMSFVI
                     AAMITEKSVVDGVESVDVSYPSFIQDMKKIGAKFNQS"
     gene            4798..5910
                     /gene="aroC"
                     /locus_tag="VFX26_00870"
     CDS             4798..5910
                     /gene="aroC"
                     /locus_tag="VFX26_00870"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004107 - chorismate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HEX5573056.1"
                     /translation="MTGNTLGEQFTLTSFGESHGRCIGMVLDGCPSGLPLSESDLQFE
                     LDKRKPGQSIITTQRKEEDKVEILSGVFNGYTTSAPICAIIWNKDSDSKPYEVIKNSP
                     RPGHADYPSFVKYGGYADYRGSGRFSGRLTATMVMGGAIAQKLLNHTLGIETIAYTTQ
                     IGQISYKSLSYQESKKNRYANDVRCPNPEIAEKMKSAIIDARKDGDSLGGIVESISVG
                     LPVGLGEPIFSSMESDLSKALFSIPSVKAIEFGSGFSGTKLKGSENNDEYVLSEDNKI
                     ITKTNNSGGILGGLTNGMPLVIRIGFKPASSIAKKQKTVDLVSNSECDIIVPGRHDPC
                     VVPRAIPVVESLVSLILADHAIRWKLIPPILSEGKK"
     gene            5907..7286
                     /locus_tag="VFX26_00875"
     CDS             5907..7286
                     /locus_tag="VFX26_00875"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEX5573057.1"
                     /translation="MSEEKELKLEKLRDDMRIVTAEIIKLVHKRMNIASQIGNIKNNL
                     MMKIEDISVEQEIARYVHDMGTQVGMNNEFIGRLLNLLFLESIKIQKEKTSNKETKLD
                     HMAMFLKAKQLESEGKKIIHLEVGEPDYMPPVSVKHELLKTFEKQRVHYTQTTGIPLL
                     RKSIAKERSVGDDNVIVSPGARFAVFSAMVSSLSVGDEMVIFEPAWPAYRDCANFIGV
                     KVKAIKTTVEQKWDLDLEELEKMITPNTKMIVLNSPNNPTGKIIHQREIEYILKLARK
                     NNIFVLSDEVYSMYSYIPYRSILEFEYDKSIMVSSFSKSHAMTGFRVGYAIASKDIID
                     KISKIQAIAVTSVAEPMQYAAVAAMKSNVTNNATLMKKRLDFIRRELKDIPCDFINPD
                     GGMYYFLRLKNNIDVSKLIFDLLNEGVAVAPGTGFGESYFDFIRISACQPIKLLSDGL
                     KIVREVMNV"
     gene            7291..8163
                     /locus_tag="VFX26_00880"
     CDS             7291..8163
                     /locus_tag="VFX26_00880"
                     /inference="COORDINATES: protein motif:HMM:NF014234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004665 - prephenate dehydrogenase (NADP+)
                     activity [Evidence IEA];
                     GO_function: GO:0008977 - prephenate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_function: GO:0070403 - NAD+ binding [Evidence IEA];
                     GO_process: GO:0006571 - tyrosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase/arogenate dehydrogenase
                     family protein"
                     /protein_id="HEX5573058.1"
                     /translation="MAKSVAIVGVGKMGLWFCNYFSKKNNFKVLLYDKRKIKLDPKKF
                     AGNITVCKSLQHCVSKADIVIVCVPIRITIPVINKCTLMMKKGACIVEISSLKLDIFN
                     SLLNIPDYLIPLSIHPMFGPGAKKLSDTKLLLVPIRNENKEKKLVRSLFKGARTIVIK
                     DPKSHDSIMAIILGMIYYVNLLLASTLSNENITLLKRVSGTTFYLQKLLFESILTDNS
                     SLISSLLADNKQLIKHLKKYNEESARLFDIIIKNKNILEKRINRIKQSYTNKRNIISS
                     YEKMYSIISKMNDE"
     gene            8206..9147
                     /locus_tag="VFX26_00885"
     CDS             8206..9147
                     /locus_tag="VFX26_00885"
                     /inference="COORDINATES: protein motif:HMM:NF013382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEX5573059.1"
                     /translation="MIKKIASDLCCVNNSCKKIGLRLESFLDLKDECIEGFLSCKVCN
                     SKYPIIQGVPILLENFHEYARQRIITYGKWIINSKSSKLKSFLRSEGAKIHSPTYNDR
                     YEENNIWYKSYLNTHQGYPSDDRLLSLLKKQIKPDHIYKMLSNKNLNLNGVGLDIGCS
                     FGSSTFELSKKLTYVFGVDLSFSFILEARKIMHDKKSRNVEFIVADAINLPFESKFFQ
                     SIIALNIVDRVDLYTLISSVNSCIKNHGKLILIDPYHFVNNNGKDKLDSIQIRKIVEK
                     FGYKINNKESYIPWIMKINERSYLFYFVDFIEAKKND"
     gene            complement(9235..10611)
                     /locus_tag="VFX26_00890"
     CDS             complement(9235..10611)
                     /locus_tag="VFX26_00890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX5573060.1"
                     /translation="MQKELLVGLLRSRRGIIGVSIIGFLLLLSAVAPLIIPIESYFMW
                     SNPNYWINNPKTAAPSWTNFFGPKDFEHVSLDMSDAKVISESLEGIRADNYRFEINMQ
                     ADSFPDDIIFLYSVKYGDIPPVLQIDINRPDNNTFTVYYSSLPPASNMNTTFSDRIFS
                     TNEIIRDALNQYQSYFNYSISGLEPQVVIFSDTTEPDVLKGVYQISERFFLFDNYSSV
                     EDAGLILGGKVFGIIGTDDLRRDLAVGIIWGTPIALFIGLTVSIFSVAIGLFYGVVAG
                     YRGKRTDETMMRVNDIFYALPTLPLLILLTIIYGSNIFLIIGFLLIFSWMGTAKVIRS
                     IALQMRNFQYVEAAKLMGQSDLKVIFKHIIPQLLPLTFASVAIAVPAAILTEAALSFL
                     GLGDPSLPTWGQLLHEANTADAASRGIWWWIVPPGLMIALTALAFFLIGNTLDAIANP
                     LRNKNQKL"
BASE COUNT         3777 a         1691 c         2063 g         3149 t
ORIGIN      
        1 gcggtagctc agcctggtag agctttcggc tgtagtagtc ggcaaaaatt gctaacctcg
       61 tgaaacagcc tatcgggcta acatttgcag cgaccgaaga gtcgcaggct caaacagatt
      121 tgatttcaag ctcttctgga gtaaatcctg cccgcgggat acacttcata ttgatatggt
      181 aatggagtct caaaatctaa attatggaat attttatgcc gatgaagcca tattctctgt
      241 tattgttaaa ttaccgaaca tgcgaaatac ttgtgttgaa aagcacagca catgttgaac
      301 cccatatcaa agaatccaat catattagag attttgtatt tggatttggt gatggaataa
      361 atacttcgtt aggaattgtt gctggtgtcg gtggggcaaa cagctcagct gactttatta
      421 tattagctgc ccttgtggga atgttcactg gtgcaaaggc aatggcagta caaaactatt
      481 tggcactaaa gtcccaaagg gagattctag aatctgaaat aaaaagagag gaatacgaaa
      541 tggaagcata tcctgaaaaa gaacgaatgg aaattgaaga aatttatcga gctaaagact
      601 ttgatgaaga tttagtaaag cgtgttacag ataagattac atcgaataaa agagtgtggc
      661 tcaaaactat gttaacggaa gaattgggat tgaacttggg cattgtcggc aaccctatca
      721 aaggagctct tattatgttt gcctctttta tcattggtgg gattttgcca atactaccat
      781 acctactatc taaaacaggt ttagtacctc ttcaatttgc attatggata gctattgcaa
      841 ttagtctcac ttcttcattc ttaatcggtg ccaaaaaagc aaagttagcg aagaaaagtt
      901 gggtgaaagg aggaatagag atgtctgctt taggaactgg aattgcctta ttaggatatg
      961 gtattggagc tgaattggct aacgcaaatc tgctaaatta ttgaatagaa aagcctgatc
     1021 aaattggtta caaataaatt caaagtttgt gtatctctgg cgacagattc ggctgataag
     1081 ttaccaaagt tgattactag ggccatacag aaacaagctg attatgtgga aattagattt
     1141 gaccatacga tttacaagga attagattac gccttagata tatcaagtag gataaaaaat
     1201 agagcaatct ttacattgag atcgaaggat gaaggtggat attttgatgg aggtcacagc
     1261 gaacatgttt cattattaaa gaaattggct ggggcaagcc caatgttact tgatatagag
     1321 atctctatca taaaaaaaga taaagagatg aggcaatttc taaaggaaaa taaaatccca
     1381 atactagtat cttctcatga ctttaaaaaa acaccaaatt tgtcaactct tttagaaaaa
     1441 tttgaagata tgtctaagta cagcaattat gttaaattgg tcaccacagc aagaactttt
     1501 gaagataatt tcaaattact ttcactttac gacaacaaca ccaatacaaa attggttgca
     1561 tttgcaatgg gagaacatgg catattatca aggttattat gcattttgta cggaggctca
     1621 ccgtttactt atgcttcatt ggataatccg ttagccccag gccaacttga cattgtacta
     1681 atgaaaaaaa tatacgatag aattggaaac aatctgaaaa gtaaatgagt acagatttta
     1741 agacttattg cataattggt gatcccttag atcattcgtt atctcccgca attcacaatg
     1801 ctgcattcaa tactctaggg cttaattgca gctatattgc cttcagggtt caagaaggtc
     1861 agttaaaaaa ttctatcgat tctttgcgat ccattaacat cggcgggttt aatgtaacaa
     1921 tgccacacaa agttaaggtt ttgaattatg ttgaccgttg tgacaagaca gttcagttgg
     1981 ttggagcagc aaatacggtc aataatgaag agggaaaatt ttgcgcgtac aatacggatg
     2041 tcgcaggttt cataagacca ttacgtaagc gaaaggttgg ttttaatggc attgaagtaa
     2101 tgattttggg agcaggaggt gccgctagag cagtggttgt tgcactctcg ggagaaaaag
     2161 gaattgcaaa tatcaatatt tttaatagga atactgaacg atcaacaaac ttagcaaatc
     2221 tcgtcaaaaa attaggatta aatgcaagca tcatttccaa tgatgacgtt cagaaaattg
     2281 cctacaagtc cgatctcata gtaaacacta ctccgcttgg aatgagtaat gaggagagtt
     2341 tgataaagtc tgccagtata agcaagaatt cgatcgtata cgatattgtt tataggccga
     2401 taaatactaa attaatagaa aatgctaaaa ctgctggtgc tcaagtggtt tacggttatg
     2461 aaatgttact agaacaggca actgcgtcat ttaaaatatg gcttaagatg gatcccccaa
     2521 tagattctat gaaaaaggtg ttgtttggaa tgtttggtga acctacttga ctataaaggt
     2581 gacatcaata gttcatggtg ccatatctat agtgaacgct gttgcaacag gatatggatc
     2641 tgcaatggga atttcactaa acgtcaaagt agaaataata tcaaagaagg gttcgggatt
     2701 aatttttcag aaaggtgggg gaagtcttat gataaaaaaa ataatctatg atgtacttca
     2761 atcaaagtat atcaacaata atcaattact gattaatata aaatcagagg taccctcagg
     2821 gatgggattg aaaagttcaa gtgcagtatc aaatgcagta gcgcttgcat gtatttcatt
     2881 aactaataaa gagatcagtg atgaatctgt actaaatagt gcaataaacg catcattata
     2941 tgcaaagaca actattaccg gggcatatga cgattcaact gcgtgttatt atggtgggtt
     3001 tgttaccaca gataactaca agagaaaaat atggaaaaga gaaaattcac ctacagacat
     3061 aagcgctgtg atatttttac caaatatcaa aaaaagggga gatgttacta ggcttaaatt
     3121 gctctcagat atttatctgg aagcttttca actggcctat tcggggcaat attggaaagc
     3181 catgaaatta aatggagttt taacatcctc attactttca aatagttaca ctatcactag
     3241 gatgtgtcta gaaaatgggg cacttgcagc tagtatatct gggaacggtc ctgccatcgc
     3301 tgccatagta cgtgaaagtg aggtgcaaaa aattaagtca gtattatcta atttagatgg
     3361 aaggctcata atttcgagaa caaacaatca aaaagcatcg acagtgagag aagttgggta
     3421 aaatagttgt aacaaggtct ttgttgaatg gtaacatcac gtgtccgcct agtaagagct
     3481 atacacacag agccattttc atttcttcct tggcaaacgg aaattcacat ataattaatc
     3541 ccctcatatc aagagacacg attgcaacaa ttgatgcatg cagagaattg ggagtaggaa
     3601 taaagagaac cgataaggga ttaattgttt ctggaaaaga cactttacaa attccggata
     3661 atgttattaa tgtagagaac tctggaacaa ctatgcgttt tgttactgct atttcctcct
     3721 tactaaatga tggatacgtt gtaatcacgg gagatgatag tattaggaaa agacctatgc
     3781 gaccattatt agcagctttg aaacaacttg gggttaatag tttttctacc agaaaaaatg
     3841 gtaaggcccc tattattgta cagggaagag gaattaatgg aggcaacatt actatcgatg
     3901 gttctatatc aagccagttt atttcaggaa ttctaattgc aggagttcgc gcaaaatcag
     3961 gaatttctct aagcgttata ggaaaacagg tctcaaaatc ctatatacaa tctacactta
     4021 atgtaatgtc caaatttggt gcaagagtaa agcattctaa agattataga aagtataata
     4081 tcttcaataa tcgatatgta ccaaccactt ttactgtacc aggagatttt tctacggcat
     4141 cattgttact atctgcaggt acactggtag gtggtgagat tacagttagt aatttggatt
     4201 tttcgttacc acaaggtgat tcaaagattc ttgaaatcct aaagaaaatt ggtgcagtga
     4261 ttagtataga caagagaaat gggactgtga agactaaggg tatccaagaa ctagatggag
     4321 gggaatttga tctaacagat acaccagatt tgcttccggt tgtggctatt ttatctttga
     4381 aatcaagaaa tcctgtgagg atatatggag tatctcacac acgttacaaa gaaacagata
     4441 gattaaaaat tattgcatct gaatttagaa aatttggagt taaaacaaag atattacctg
     4501 atgaaattac cattgtttct ccaaaaaaat taaagagtgc actcattgat tcacataatg
     4561 atcataggct ttttatgagc ttcgtaatag cggccatgat cacagaaaaa tctgttgtgg
     4621 atggtgtaga atcagttgat gtttcttacc cgtcttttat acaagacatg aaaaagatcg
     4681 gcgctaaatt taatcagtct tgactcatca tattaacttc gtcaagtttt ttgctaatat
     4741 agtaaattaa cataaaggca atatatatga catacaaatg gtatcaatat ctataaaatg
     4801 actggtaata ccttgggtga gcaattcact ttaactagtt tcggtgaaag tcatggaaga
     4861 tgcatcggaa tggtattgga tggatgtcct tctggacttc ctctctctga atcagatcta
     4921 cagtttgaat tagacaagcg aaaaccggga caatcaataa ttacaaccca gagaaaagaa
     4981 gaagataaag tagaaatttt gtcgggagtt tttaatggat atactacttc agctcccata
     5041 tgtgcgataa tatggaacaa agattcagat tctaaaccgt atgaggtgat aaagaatagt
     5101 ccacgaccag gtcacgcaga ttatccatct ttcgtaaaat acggaggata tgccgattat
     5161 agaggaagcg gtagattttc tggtagatta acagcaacca tggtcatggg tggtgcaata
     5221 gcacaaaagc tcttgaatca cacgttggga atagaaacca ttgcttatac tactcagata
     5281 ggtcaaatta gttacaaatc tttatcttat caagaatcaa aaaaaaatag atatgcaaat
     5341 gatgttcgct gtcctaatcc tgaaattgct gagaaaatga aatctgctat tatcgatgca
     5401 aggaaagatg gagattctct gggaggtatt gtcgagtcta tctctgtggg attaccagta
     5461 ggtttgggcg aaccaatatt ctcctcaatg gaatctgatc tcagtaaagc gttatttagc
     5521 attccatccg taaaggctat agaatttgga tctggttttt caggaacaaa actaaaaggt
     5581 tctgaaaata acgacgagta tgtactctct gaggataaca agataataac aaagacgaac
     5641 aattctggag gaatattagg aggtttgact aatggaatgc cattagtaat aagaattgga
     5701 ttcaagccag catcatccat agcaaaaaaa caaaaaacag tagatttggt ttccaattct
     5761 gaatgtgaca ttattgttcc tggaagacac gatccctgcg ttgttcctcg agctatacca
     5821 gtagtagagt cgttagtttc attgattttg gctgaccacg cgattagatg gaagctaata
     5881 ccacctattc tgagtgaagg aaaaaaatga gcgaagaaaa ggaactcaaa ttagaaaaat
     5941 tgcgcgatga catgcgaatt gtaactgcag agataataaa acttgtacat aaaagaatga
     6001 atatagcaag ccaaatcgga aatatcaaaa ataatctgat gatgaaaata gaggatattt
     6061 ccgttgaaca agagatagcg aggtatgttc atgatatggg aacgcaagta ggaatgaata
     6121 atgagtttat aggaaggcta ttgaatttat tatttttaga gtcaataaaa attcaaaagg
     6181 aaaaaacttc aaacaaagaa acaaagctag accacatggc catgtttttg aaggcgaaac
     6241 aattagaatc tgagggtaag aagataattc atctggaagt tggtgagccc gattatatgc
     6301 ctcccgttag tgtcaaacat gaattattga aaacttttga gaaacaacgt gttcactata
     6361 ctcaaacgac tggaattcct ctactaagaa agtcaattgc aaaagagaga tcagtaggag
     6421 atgataatgt catagttagt cccggggcaa ggtttgcagt atttagcgca atggtttctt
     6481 cattatcagt tggcgatgaa atggtcattt ttgaacccgc gtggcctgct tacagagatt
     6541 gtgcaaattt tatcggtgta aaagttaagg caatcaagac caccgtggaa caaaaatggg
     6601 atctagattt ggaagaatta gagaagatga taacacctaa taccaaaatg atagttctaa
     6661 actctccgaa taatccaaca ggaaaaataa tccatcaaag agaaattgag tacatcctta
     6721 agttggctag gaaaaataac atctttgttc taagcgatga ggtgtactca atgtattcct
     6781 acattcctta taggagcatc ctcgaatttg aatacgataa gagcataatg gtttcctcat
     6841 tttcaaaaag tcacgctatg acaggcttta gagtgggata tgcgatagct tcaaaagata
     6901 tcatagataa aatttccaag attcaggcaa ttgctgtaac gagtgtagca gaaccaatgc
     6961 aatatgctgc tgttgctgca atgaaaagta atgttactaa caatgcgact ttaatgaaga
     7021 aacggttaga tttcataaga agggaactaa aggacattcc ttgcgatttc atcaatccag
     7081 atggtggtat gtattacttc ctcagactca aaaataacat cgatgtaagt aagttaatat
     7141 ttgatctctt aaatgaggga gttgcagtag ctccgggaac tggttttgga gaatcatatt
     7201 ttgatttcat tagaatttca gcatgtcaac caattaaatt actaagtgat ggattaaaaa
     7261 tagtaagaga agttatgaat gtgtgatatt atggctaaat cagtcgcaat agtaggagtt
     7321 ggaaaaatgg gtttgtggtt ctgtaactat ttttcaaaaa aaaataattt taaggtatta
     7381 ttgtatgaca agagaaagat caaattagat ccaaaaaaat tcgctggtaa tataactgtc
     7441 tgcaaatcac tgcaacattg tgtaagcaag gcggacattg ttattgtgtg tgtaccaatt
     7501 aggataacaa ttcctgtaat taataaatgc acattaatga tgaaaaaagg agcctgcata
     7561 gtagagatat cttcacttaa actggacatc tttaattctt tgctaaatat tccagattac
     7621 ttgattcctc tgtcgattca tccaatgttt ggtccaggag ctaagaagtt gagtgatact
     7681 aaattattgt tggtaccaat aaggaacgaa aataaagaga aaaagttagt aagatcatta
     7741 tttaaggggg cgagaacaat agtaatcaaa gacccaaaat ctcatgattc aattatggca
     7801 ataatattag gaatgattta ctacgtaaat ttattactgg ctagcacatt aagcaatgaa
     7861 aatatcacac tactaaagag agtttccgga actacttttt accttcaaaa actcctcttt
     7921 gaaagcatac tgactgacaa ttcatcactt atatcgtcac ttcttgcgga caacaagcaa
     7981 ttaataaaac atttaaaaaa atataatgaa gaatccgcta gattattcga tataataatc
     8041 aagaataaga atattcttga aaaaagaatt aatagaatca agcaaagcta tactaacaag
     8101 agaaacatta tctcatcgta tgaaaaaatg tattcaataa tttcgaaaat gaacgacgaa
     8161 tgaataagat gtatactcaa tcatttagat gtaaagtaat gatatatgat aaaaaaaatt
     8221 gcttctgatt tatgttgtgt taataattcc tgtaaaaaga taggcctaag actagaatca
     8281 tttctagact taaaagatga atgcatagaa ggatttcttt catgtaaagt ttgtaactca
     8341 aaatacccca ttattcaagg tgttcctata ttgttggaaa attttcatga atacgctcgt
     8401 caaagaatta taacatatgg taaatggata ataaattcta aatcttctaa actcaagtcc
     8461 tttcttagat cggaaggcgc aaagattcat agtccaacat ataacgatcg ctacgaggag
     8521 aacaatattt ggtataaatc ttacttgaat actcatcagg gttacccttc agatgatagg
     8581 ctattgtctt tattgaaaaa gcaaataaaa ccagatcaca tttacaaaat gctgtctaac
     8641 aagaacttga acttaaatgg ggttggattg gacattggat gttctttcgg atcaagcacc
     8701 tttgaattgt caaaaaaatt gacatatgtc tttggagtag atctttcatt ctcattcata
     8761 ctagaagcta gaaaaataat gcatgataaa aaaagtagaa atgtagaatt tattgtagca
     8821 gatgcgataa atcttccctt tgaatcaaaa ttctttcaga gcataattgc attgaatatt
     8881 gttgatagag tcgatctgta cacgctaatt tcttctgtga atagttgcat caaaaaccat
     8941 ggaaaactta ttttgattga tccttaccat tttgtgaaca ataatggtaa ggataaactt
     9001 gattcaatcc aaatcagaaa aattgtagaa aaatttggat ataaaataaa taataaagaa
     9061 tcatatatac catggataat gaaaataaac gaaagatctt atctcttcta ctttgtggat
     9121 tttatagaag caaagaaaaa tgattaaaaa tagtttcgga gataatcgac ataaattttt
     9181 gtacaaatca gagctgcagt gttaatagac taatcaaact ccaattcaaa tatttcaaag
     9241 tttctgattc ttgtttctta atgggtttgc aatagcatcc agtgtatttc caatcaagaa
     9301 aaaagccagg gcggttaatg ctatcataag tccaggaggc acaatccacc accaaatacc
     9361 tcgtgacgca gcatctgcgg tatttgcttc atgaagtagt tgtccccaag taggtaatga
     9421 tggatctcct aaaccgagaa agctcaatgc ggcttcggta agaatagctg caggaacagc
     9481 tattgccaca cttgcaaatg tcagtggaag tagttgtgga attatgtgtt taaaaattac
     9541 ctttaaatct gactgtccca ttagtttagc tgcttcaaca tactgaaaat tgcgcatctg
     9601 taatgcaatg cttctaatca cttttgcagt tcccatccag ctaaaaatta gtaaaaatcc
     9661 aattattaga aagatgttac tcccataaat aatcgtaaga agaataagga gcggcaacgt
     9721 tggtaacgcg taaaatatat catttactcg catcattgtt tcatcagttc tctttcctct
     9781 gtatccagct actacaccat aaaacagtcc aatagctacc gaaaaaatgg aaacagttag
     9841 ccctatgaac aatgctatag gagtccccca tatgatccca acagcaagat ctcttctcaa
     9901 gtcatcagtt cctatgatac cgaatacttt acctccaaga attaacccgg catcttcaac
     9961 gctgctgtaa ttatcaaata aaaaaaatct ttctgatatt tggtacactc ccttaaggac
    10021 gtctggttca gtagtatctg aaaatattac cacttgtggt tcaagaccag atattgaata
    10081 attaaagtaa ctttggtatt gattcaaagc atctctgata atttcgtttg tagaaaagat
    10141 cctgtctgag aaagtagtat tcatgttact cgctggaggt aatgacgaat aataaacagt
    10201 aaaagtattg ttgtcaggtc tgttaatgtc aatttgcaaa actggaggga tatcaccata
    10261 tttaacagag tatagaaaga taatgtcatc aggaaagcta tcggcttgca tattgatttc
    10321 gaatctatag ttatctgctc taatcccttc taatgattct gaaataacct ttgcgtcgct
    10381 catatctaac gatacatgct caaaatcttt gggtccaaaa aaattagtcc aagaaggtgc
    10441 ggctgttttt ggattattaa tccaataatt tggattactc cacataaaat aggattcaat
    10501 tgggatgatt aatggtgcga ctgcgctcaa taacaataga aacccaataa ttgatactcc
    10561 aataatgccc ctacgagatc ttaatagacc taccagtaat tctttttgca ataaattagt
    10621 taccttgtac cctagggtcc aacagtgtat aagaaatgtc tgtaatgaat attgttacta
//
LOCUS       DASUMD010000035         3950 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_230408, whole genome shotgun sequence.
ACCESSION   DASUMD010000035 DASUMD010000000
VERSION     DASUMD010000035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3950)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3950)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3950
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_230408"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            398..1864
                     /locus_tag="VFX26_00895"
     CDS             398..1864
                     /locus_tag="VFX26_00895"
                     /inference="COORDINATES: protein motif:HMM:NF024808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEX5573061.1"
                     /translation="MKYYCRFHFHFGEILKDRIIYQYNTDKNINRYKLSSFSGVTLAI
                     ALLSSLFAYPVNIAFSFPQQADGIQQQKEQITLNAILTNLGDPIRWKALIQPALQELR
                     QRHPNLDIQIAIDANNLYNNTRMKLINALSNQSGRSIDLVSVDQIWLGEFAEKGLVTD
                     LSDRVQKWGRSSDWYQSNLDGMTYNESIYGVWAWTDVRGIWYWKDLLNEAGVNSSSLE
                     TWQGYIDSAMKVNNKTKVREIQGTILFDAALSPDLWYPYLWMLGGNIIESRGGHPTKG
                     EYWFPSYNGTEGVRAMEFIKEQANAGIKPENGDSKNLDEEFALKKFAIYLGGQWIPLW
                     FPQADQKISNFEEKIGFIPMFPVPNKGNRTITTMMGGWILSIPTVSENKELTWELITI
                     MLEPRILAPWLAKYLYLPTQKSIGEGNYSKLFERTLPYSQEMLSLIQFGHGRPTIPEY
                     PSIAEHIRQAINEVQYGIKEPKQALDDAAEKSAKILGW"
     gene            1858..2151
                     /locus_tag="VFX26_00900"
     CDS             1858..2151
                     /locus_tag="VFX26_00900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573062.1"
                     /translation="MVEKAQQTGSAVGQRQDSIVESRLRIVPSWFHAKDLNNSPCSGK
                     STSLLLFSLVSSIQLIFKTISCPPIDIPTTILMSPMISNKIIGWYFNTAIQSL"
     gene            2185..3300
                     /locus_tag="VFX26_00905"
     CDS             2185..3300
                     /locus_tag="VFX26_00905"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEX5573063.1"
                     /translation="MKIAFYSVLNLGYGGGFEKWVEQVATILSTRGHQIIILTTKYGD
                     NKNKIIQKNLSRQGVKIFEYENYQRLFVIPTISATRQIAKMIENIDVLYFNNAFPVNE
                     VIVSLLKIGRNRNLKIISGYHGLFPEKGNMMTRLYYRVVNKSLSEKFDAFHVLNTEDQ
                     RMLQSWRYRNIYKFPNGVDTVRYIPGQKKNTFTVMFAGRMVYQKGIDILADVIRKIND
                     SQEKNLNFHIFGAGPLEYIVKDLEIKFSNVIYSSYVNEEKLIDAFQSAHVFVSPSRFE
                     TFLLTSLEAQSAGTPIIASDISGPRETIISGQTGLLVNPTQYEIINAILYFKDLWDNR
                     KQEYYDYCQNARRNALRYDWKITVDKFEQMLSIVVNK"
     gene            3523..3657
                     /locus_tag="VFX26_00910"
     CDS             3523..3657
                     /locus_tag="VFX26_00910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573064.1"
                     /translation="MSESSDMHLQMGQVEPEPEEPGDVEPEPAPEPGQAGDTEDDSKE
                     "
BASE COUNT         1395 a          644 c          766 g         1145 t
ORIGIN      
        1 atattaaaat aatactaatg agtgcttttg agataaatgg ggacgatctg aaggagttaa
       61 ggtatgataa acaagttcaa aagcccatac acctgcgggc ccttgttcag accattgaca
      121 agctattgaa aaattaagta gcattttgac ttctataatt gattacatca ttataacctg
      181 actttaaatt ctggtacttc agacgcagta tgaattacat cttccttgga agtgcgtatt
      241 cacaagatga acttttttca agttaactca ttgtcatagt tgataagttt tcccataaag
      301 tcacatccaa tctccttagt ccaattggag aactgctata gataaggtgg gattagatcc
      361 ctgcaaatga attatctgaa gatattggaa ctgcaaaatg aaatattatt gtagatttca
      421 ctttcatttt ggagaaatcc ttaaagatag aattatttat caatataaca cggataaaaa
      481 cataaacaga tataaactat catcattcag tggtgtaaca cttgcgatag cattgcttag
      541 cagtcttttc gcgtatccgg ttaacattgc tttttcgttc ccacaacaag cagatggtat
      601 tcaacagcaa aaagaacaga ttactcttaa tgcgatacta accaaccttg gtgatcctat
      661 taggtggaag gcacttatac aacctgcact acaagaatta agacagagac atccaaattt
      721 agatattcaa atcgctattg atgctaataa tctatataat aatactagaa tgaaattaat
      781 aaacgcgtta tccaatcaat ctggccgttc aattgatttg gtatctgtag atcaaatatg
      841 gctaggggaa ttcgctgaga aaggactcgt aactgatctt agtgataggg tacaaaagtg
      901 gggacgatct tcagattggt atcagtcaaa tctagatggc atgacatata acgaatcaat
      961 atatggtgta tgggcatgga ctgacgttag agggatatgg tattggaaag acctcttaaa
     1021 tgaagcaggc gttaattcca gtagcttaga aacttggcaa ggctatattg attctgcaat
     1081 gaaagtaaat aataaaacaa aagtcagaga aatacaaggc actatacttt tcgatgctgc
     1141 attatcacct gacctatggt acccatactt atggatgctt ggaggaaata taatcgaatc
     1201 tagaggtgga catcctacaa aaggagaata ctggtttcca tcatataatg gtactgaagg
     1261 agtaagagcc atggagttca taaaggagca agctaatgct ggaataaaac cagaaaatgg
     1321 agattcaaag aacttggatg aagagtttgc actaaagaag tttgccatat atttaggcgg
     1381 acagtggata ccactttggt ttccacaagc agatcaaaaa atatcaaatt ttgaagagaa
     1441 aataggattc ataccaatgt ttcctgttcc aaataaaggt aaccggacaa taacgacgat
     1501 gatgggaggg tggattttaa gtatacctac agtatcagaa aacaaggaat taacatggga
     1561 actgattaca ataatgctgg agccaaggat tcttgcaccc tggctagcca aatatctata
     1621 ccttcctacg caaaagtcaa taggtgaagg gaattattca aagctctttg aacggacatt
     1681 accctattca caggaaatgc tttctctaat tcaatttgga catggtagac ctactatacc
     1741 agaatatcca tctatagctg agcacataag acaagcaata aatgaggtcc agtatggcat
     1801 taaggaacca aagcaagcat tagatgatgc tgctgagaag tctgcaaaaa tactaggatg
     1861 gtagaaaaag cacagcagac agggtctgct gtaggtcaaa ggcaagattc catagtagaa
     1921 agcagattga gaattgtacc cagttggttt catgcgaaag atttgaacaa cagtccttgc
     1981 agtggtaagt ccacgtcgtt attgttattt tccctagtga gttccattca attgatattc
     2041 aagactatat cttgtcctcc aatagacata cccactacca tcctaatgtc cccgatgatt
     2101 agtaacaaaa taataggatg gtattttaat acagccatac aaagtttata agaattttat
     2161 gggcaaaaca agaatagtgg aaaaatgaaa atagcatttt atagtgttct aaacttaggc
     2221 tacggcggtg gatttgagaa atgggttgaa caagtagcga ctatactttc tactcgaggg
     2281 catcaaatta ttatattgac gaccaagtat ggagacaaca aaaataaaat tattcaaaaa
     2341 aatttgtcga gacagggcgt taagattttt gagtatgaaa attatcaaag attgtttgta
     2401 ataccaacta tatctgcgac tagacaaatt gcaaagatga ttgagaatat tgatgtatta
     2461 tattttaata atgcctttcc cgtaaatgaa gtgattgtat ccttacttaa aataggtaga
     2521 aatcgaaatt taaagatcat ttctgggtat catggattat ttcctgaaaa aggaaatatg
     2581 atgacgagat tatactatag agtagtaaat aaatcactga gtgagaaatt tgatgcattt
     2641 catgttctta acacggaaga ccaaaggatg ttgcaatcct ggcgatatag gaatatttac
     2701 aaatttccaa atggagtaga tacagttcgc tatattcccg gtcagaagaa gaatacattt
     2761 actgtgatgt ttgctggaag gatggtatac cagaagggta ttgatatatt agcagacgta
     2821 attagaaaga taaacgattc acaagagaaa aacctgaatt tccatatatt cggtgcagga
     2881 cctcttgagt atatcgttaa agatcttgaa ataaaatttt ccaacgttat atattcctct
     2941 tacgttaatg aagaaaaact gatagatgcg ttccagtctg cacatgtttt tgtttctccc
     3001 tcacgctttg aaacatttct ccttacgtcc ttagaagccc aatcagcagg aaccccaata
     3061 atagcaagtg atatatctgg tccaagggaa actatcataa gtggacaaac tggacttttg
     3121 gtaaatccaa cacaatatga aattataaac gcaatattat acttcaaaga tctttgggac
     3181 aatagaaagc aagagtatta tgattattgc caaaatgcca gaagaaatgc tcttagatat
     3241 gattggaaaa ttacagttga taagtttgaa cagatgttaa gtatcgtagt caataaatga
     3301 ggtcaaatca tatttggagt gactcgcgca cttgacattt tagttgtttt cagataaatt
     3361 taacaagtta ttttattact agtaattaga cattatagct tgccatccct aaagtgcaaa
     3421 gatattgatg cagatattga tgcatacatc tttttatttt ttatatcaca aagcccattt
     3481 tcgttataaa tccataaata cttttgaggc ttcagtaaga tcatgtcaga atcaagtgac
     3541 atgcatttac aaatgggaca ggtggaacct gaacctgagg aacctggaga cgttgaacca
     3601 gaacctgcac ctgaaccggg acaagcagga gacacagaag acgattcaaa ggaataggta
     3661 ggtcaaactg aattccatta cataaataag ccaaacataa cccttatttt tcaagaattg
     3721 gatgtgttaa tggtgccggg ttatcaatca tccaaatcct actttgggtc ttggaacgag
     3781 tatgagttca cgattaaatc aattgtttaa aaaaagtcgc tgtctcgtga tatttgataa
     3841 aggaagcagt tagcatctat aggacagcgt taaggagtcg caaggccata aattgggggt
     3901 gaaattttta cttcaatcca gcttaacaga ttatcaatgc catcgcctgt
//
LOCUS       DASUMD010000036         2290 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_451547, whole genome shotgun sequence.
ACCESSION   DASUMD010000036 DASUMD010000000
VERSION     DASUMD010000036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2290)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2290)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2290
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_451547"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..685
                     /locus_tag="VFX26_00915"
     CDS             <1..685
                     /locus_tag="VFX26_00915"
                     /inference="COORDINATES: protein motif:HMM:NF024832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="polysaccharide biosynthesis C-terminal
                     domain-containing protein"
                     /protein_id="HEX5573065.1"
                     /translation="IIIGFIISFFAFSITYFKTIPQFSKSFDKIAKEFKTSLHLYSYN
                     LSNALLLYFDKLIIAPIYGYTILGYYQLGFQFLMFFSMISVSFYQYLIPEESSGRKRN
                     RLRLYGIALSIIITILVYILAPIILQVFFPNYINSLNSIRILSLAIIPMMITSMLNSK
                     FLAMKLTRYVLFSSITYQVTQIILIVILGKQYGIDGISMSVVIAMLFQITFLGIAHLR
                     LSKKNKQNI"
     gene            complement(708..1346)
                     /locus_tag="VFX26_00920"
     CDS             complement(708..1346)
                     /locus_tag="VFX26_00920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VTT domain-containing protein"
                     /protein_id="HEX5573066.1"
                     /translation="MNIEELFSFYDDFGYLGILLISFVGSIIVFVPVPYFPVLITAAF
                     NENLDPTLIALSSAIGAVIAKLIIFYASYYGRNILSSKIKVKMVPLQRLLARYGAIGA
                     FVAAVSPIPDDIVYIPLGLAKYSPWKFATATFLGKFLLNEIFVLGAIYFGKPFVNNLM
                     SNSTNIDYLIIVTIASIAALGVIVYFALKIDWAKIIGHWFPWTLDKDQGNGK"
     gene            complement(1373..>2290)
                     /locus_tag="VFX26_00925"
     CDS             complement(1373..>2290)
                     /locus_tag="VFX26_00925"
                     /inference="COORDINATES: protein motif:HMM:NF015113.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="His/Gly/Thr/Pro-type tRNA ligase C-terminal
                     domain-containing protein"
                     /protein_id="HEX5573067.1"
                     /translation="EVRMILDIYKMLIEEYLAIPTLSGFKTDKEKFVGAKYTTCLESA
                     MADGKALQMATSHHLGQNFSKPFEIKFLDKDMVEQYVWQTSWGFSWRVIGAIIMVHGD
                     DKGLILPPKISPTQVIIVPIYKDESKTVVKQKAYELEQKLKDSQIRVQTDDRDEFTSG
                     WKFNDWEMKGVPLRANIGLRDIQENQVELIRRDTKERFYVKEKELVSQTLSILEKIQL
                     NMFDRAKNLLQEKTRSATTLEELLSVLDTTGGFVSCSWCGKRDCEDLVKEKTTADIRI
                     VPFNPKNNISSCIGCGNQETIEVYFGRAY"
BASE COUNT          711 a          451 c          346 g          782 t
ORIGIN      
        1 aattattata ggcttcataa tctctttctt tgcttttagc attacttact ttaagactat
       61 tccacaattt agtaaaagct ttgataagat tgcaaaagaa tttaaaacat cattgcatct
      121 atattcttat aatctctcca acgcattgct tttgtatttt gataaattaa ttattgctcc
      181 aatttacgga tatacaattc tgggatatta tcaattggga tttcagttct tgatgttttt
      241 tagtatgatt tcagtcagct tctatcaata tttaatacct gaagagtcaa gtggaagaaa
      301 aagaaacaga cttcgattat atggaatagc tctttctata attataacca tactggtata
      361 cattctagcg cccataattc tccaagtctt ctttccaaac tatattaatt cactaaattc
      421 cataagaatt ctgagtctcg cgatcattcc aatgatgatt acgagtatgc ttaactcaaa
      481 gttcttggca atgaaactaa cccgctacgt actattttct tctataacat atcaagttac
      541 gcagattatt cttattgtta ttcttggaaa acaatatgga atcgatggta tatcaatgtc
      601 agtagttatt gcaatgctct tccagataac cttcttaggg atagcacatt tgcgtctaag
      661 caagaaaaat aaacaaaata tttgagatag aaaaaaaata gtagttacta tttgccattt
      721 ccttggtcct tgtccaaagt ccacggaaac cagtgtccga taatttttgc ccagtctatt
      781 ttcaaggcaa aataaactat tactcccaaa gctgctatac tagcaatagt tactatgata
      841 aggtaatcta tatttgttga attagacata aggttgttta caaagggctt tccaaaatag
      901 atagctccca aaacgaaaat ttcgtttaat aaaaactttc cgagaaatgt cgctgttgca
      961 aatttccatg gactatattt agcaagacct aatggaatat acacgatatc atctggtatt
     1021 gggctaacgg ctgcaacaaa tgcacctata gcaccatacc tggcaagtaa tctctgtaga
     1081 ggaaccattt ttaccttaat ttttgaactg agaatatttc taccataata actggcatag
     1141 aaaataatca attttgctat cactgcgcct attgcacttg agagtgcaat cagtgtagga
     1201 tccaagtttt cattaaatgc tgctgtaatc aacaccggaa aatatgggac aggaacaaag
     1261 acaatgatgc taccaacaaa actgattagt aagatgccta gatatccaaa atcgtcataa
     1321 aatgaaaata attcttcaat attcaattct tctcagaact ttaatctctt tcctagtacg
     1381 ctctaccaaa atatacttcg attgtttctt ggtttccaca tccaatgcat gatgaaatat
     1441 tatttttagg attaaatggg actattctga tatcggccgt tgtcttctcc ttaacaaggt
     1501 cctcacaatc tctctttcca caccagctac acgatacaaa acccccagtt gtgtcaagta
     1561 ctgagagtag ttcttccaaa gttgtcgcag atcttgtttt ttcttgaaga aggttctttg
     1621 cacgatcaaa catgtttaac tgtattttct ctaaaatgga caaggtttgg ctaacaagtt
     1681 ctttttcttt gacataaaat ctttccttag tatctctcct tatcaattcg acttgatttt
     1741 cttgtatgtc tcgaagtcca atatttgctc ttagaggcac tcctttcatc tcccaatcat
     1801 taaatttcca acctgaggta aactcgtctc tatcatcggt ctgaacacgt atctgagaat
     1861 cttttagttt ttgctctaat tcatatgcct tttgtttgac gacggtctta ctttcatcct
     1921 tataaatagg aacaatgatg acctgtgttg gcgaaatctt gggggggagt ataagacctt
     1981 tgtcatctcc atggaccatt attatggcgc caattactct ccaagaaaat ccccacgaag
     2041 tttgccagac gtattgttct accatatcct tatctagaaa ttttatctcg aacggttttg
     2101 aaaaattttg acccaaatga tgggacgtag ccatttgcaa tgcctttcca tccgccattg
     2161 ccgattctag acaagtagtg tactttgcac caacaaattt ctccttatca gtcttgaatc
     2221 cagaaagggt cggtatggct agatattctt ctatcaacat tttataaata tcaagtatca
     2281 tcctaacctc
//
LOCUS       DASUMD010000037         4262 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1225400, whole genome shotgun sequence.
ACCESSION   DASUMD010000037 DASUMD010000000
VERSION     DASUMD010000037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4262)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4262)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4262
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1225400"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..229
                     /locus_tag="VFX26_00930"
     CDS             <1..229
                     /locus_tag="VFX26_00930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="succinyl-CoA synthetase subunit beta"
                     /protein_id="HEX5573068.1"
                     /translation="AILVNLFGGIVRTDLVAQAIINAYEDGMISVPIYARISGAESDK
                     SKKMLSNSNAKLYDTVEEAISSLVQYIGLSR"
     gene            230..1144
                     /gene="sucD"
                     /locus_tag="VFX26_00935"
     CDS             230..1144
                     /gene="sucD"
                     /locus_tag="VFX26_00935"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HEX5573069.1"
                     /translation="MSKKFDIFDILVGKPDDADHGNKPVIIQGITGNFGSVHTRLMRE
                     YGTNIVAGVTPNKGGQSFEGIPVFDSVKDASKNFDAKISGIFVPAQFFLSAVKDAVNN
                     GIKLLVAIPEHVPVRDAMEALEYAQTNGARIIGPNTPGVIIPSVNKIGIMPSQPFTKG
                     NTAVFSRSGTLMYEVSYHLSREGIGQKIALGIGGDPINGTNLIEAFELISDRDEVESV
                     VVVGEIGGDAEESLVQYIEKTSFNKPVVAYVAGRSAPKEKRMGHAGAIVYGNYGSAES
                     KISSFSRVNIPVAKRPAEVPSILLKLMR"
     gene            1389..2216
                     /locus_tag="VFX26_00940"
     CDS             1389..2216
                     /locus_tag="VFX26_00940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573070.1"
                     /translation="MDLSYLAQNLIKLKNEYLDKVHSYNHIREFIPDPNHQSLFDKSH
                     LKKLQTFFKFNKIYYKEQSITLANIPCISYEGDINQFWLSSKKYDTNYQPFLPTWGLS
                     ALVMVLVAKDLGFENIIDIGSGDGRLLFCGSIVGLNSVGVEIDKDLCNLQNEISSFSN
                     VKFQVINGDSNSIDYSQLELENTMIFISALPESGEMISYGITNQFEKYRDKLHNVGIT
                     LMGSHTYRRYSRDRSKWGWGKFIDDCGLKIIECLSLPSSWTLDEKKETPYLFTLLKC"
     gene            2454..3005
                     /locus_tag="VFX26_00945"
     CDS             2454..3005
                     /locus_tag="VFX26_00945"
                     /inference="COORDINATES: protein motif:HMM:NF015690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF309 domain-containing protein"
                     /protein_id="HEX5573071.1"
                     /translation="MVYLKNEKYLPQDASSILSLSRNILQDYEIIIRDARIATHFIEL
                     DMSVPSKLEIEKINSKLSGIGSIVEMDRIVETDLDKKISLQKARELFNNEKYWKTHEV
                     LEGTWKHTEGDERALLNGIILVAAALVHYQKGEQAICISIMKRALVKLNNAYGNYHDI
                     DIDSLKTQVTNIVNSSKVSSFKI"
     gene            3319..>4262
                     /gene="gatE"
                     /locus_tag="VFX26_00950"
     CDS             3319..>4262
                     /gene="gatE"
                     /locus_tag="VFX26_00950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Glu-tRNA(Gln) amidotransferase subunit GatE"
                     /protein_id="HEX5573072.1"
                     /translation="MVNSEPTAHDRVKVGLEIHQQLDSKNKLFCNCKTVDSTEHDFTF
                     KRILRPTQSEMGSYDQAALFESKKIKTVKYQSSKISNCLIESDEEPPMMVNTEALELV
                     LAISLALHCTIEDELHVMRKIVIDGSNTTGFQRTILVGRNGFLDVDGIRVGIQSICLE
                     EDAARIINEVKDDDESKIFALDRLGIPLIEVALEPISNTPLFITNVAQTIGRLLRSTK
                     KVTRGLGSIRQDVNISTNGGAVVEVKGVQQLSQLALVIEYETKRQDGLNVIAKELKSR
                     KIDESKFLDNITDVSDLMKQSSSKVVKKILGGDSRFMG"
BASE COUNT         1481 a          683 c          826 g         1272 t
ORIGIN      
        1 ggccatttta gtaaatttgt tcggcggtat tgttagaacg gacttggtgg ctcaagccat
       61 aataaatgct tatgaagatg gtatgattag tgttcctatt tatgccagga tctcaggggc
      121 agaatctgat aaatcaaaaa aaatgctttc taacagtaat gcaaaactgt atgataccgt
      181 agaagaagcg atttcatcac tagtacagta cataggattg agcagataga tgtccaaaaa
      241 gtttgatatt tttgatattc tagtaggtaa acctgatgat gctgaccatg gtaataaacc
      301 agttataatt caggggataa ctggaaattt tggttcagtt cacactaggt taatgagaga
      361 atatggcaca aatattgtcg caggtgtcac tcctaataaa ggcggacaat catttgaagg
      421 aattccagtt ttcgattctg taaaggacgc tagcaagaac tttgatgcaa agatatctgg
      481 aatatttgtt cctgctcaat tctttctttc tgcagtaaag gatgcggtga ataatggaat
      541 aaaattactt gtagctatcc ctgaacacgt tccagtacgt gatgcaatgg aagccttaga
      601 gtacgcacag actaatggtg caaggataat aggcccaaat actccaggag ttattatccc
      661 ttcagtaaat aaaataggga taatgccttc ccaaccattc acgaagggaa atacggcagt
      721 tttttctagg agtgggactc tgatgtatga agtctcttat catttgtcaa gggaaggaat
      781 aggccaaaaa atagcattgg gaattggtgg agatccaatc aacggaacaa atttgatcga
      841 agcttttgag ctcataagcg atcgagatga ggtcgaatcg gtagtagtag tgggagaaat
      901 aggaggagat gccgaggaat ccctggtcca atatatcgaa aaaacaagtt tcaataaacc
      961 agttgtagcg tatgttgccg gacgatctgc accaaaggaa aaaagaatgg gacatgcagg
     1021 agcaatagtt tatggaaatt acggttcagc ggaatctaaa atttccagtt tctctagagt
     1081 caacattcct gtcgcaaaaa gacccgctga agttccaagt attctattga agctgatgag
     1141 ataaatatat gatgataaga taccgtaccc tttcattcat gctttgctcg tttcaataaa
     1201 acgatattaa tgcgagtaac aacaatgaca ttcaatgcaa taaattgtaa tttgataaat
     1261 actaattaat tggatgtacc tatttagata gccttgtatc atttagacct accacaatgt
     1321 tactattgta tcttatgcca agatggagca aatattttct cataaatata taccaatgtg
     1381 agaattgaat ggatctcagc tatttggcac aaaatttgat taaacttaag aatgaatatc
     1441 ttgacaaggt tcattcatac aatcatatta gagagtttat cccagatcca aatcatcaaa
     1501 gtctatttga caaatcacat ttgaaaaaac tacaaacttt ctttaagttt aacaaaattt
     1561 actacaagga gcaaagcatc accctcgcta atattccttg catttcatat gaaggagata
     1621 ttaatcagtt ttggctgagt tcaaaaaaat atgatacaaa ctatcagcca tttcttccaa
     1681 cttggggact ctctgcatta gtaatggttc tggttgcaaa agatttggga tttgaaaata
     1741 tcattgatat cgggtcgggc gacggaagat tgttgttctg tggaagcata gttggtctta
     1801 attccgtggg agtagagatt gataaagatc tatgcaacct gcaaaatgaa atatcttctt
     1861 ttagtaacgt aaaatttcaa gttattaacg gtgactcgaa ttctatagac tactcacaat
     1921 tggaacttga gaataccatg atcttcatct cagctttgcc tgaatctgga gaaatgatat
     1981 cttatggcat aacaaatcaa tttgaaaaat atagggataa attacataat gtgggtatta
     2041 cgttaatggg aagccatacc tacaggagat actctcgcga tagatccaaa tggggatggg
     2101 gaaaattcat agacgattgt ggattgaaaa taatagaatg tttaagtcta ccaagctcgt
     2161 ggactcttga tgaaaagaaa gaaactccat atttgtttac tctccttaaa tgctaaagct
     2221 aatcatttag cataaaaata ttgggacatt tattcaatct aactctgctt gttaaaccct
     2281 ttgatatctt ccttctattt ttaccctatt aaagtacttt cggtcgtgca atttccagct
     2341 tgaacttatg aacatggcat catataaccc tcctttttat gcaataactt attttggtat
     2401 attgcacaaa tagattacag aatagagatt tggcaaatca tttgttaaga tacatggtat
     2461 atctaaagaa cgaaaagtac cttccacaag atgcaagttc gatcctttca ttatcaagaa
     2521 atattttaca agattacgaa attatcatta gagatgccag gattgcaact cattttattg
     2581 aacttgatat gagtgttcct tctaaattag aaatagaaaa aataaattca aaactatcag
     2641 ggatcggatc aattgtagaa atggatagaa ttgttgaaac tgatcttgat aaaaaaattt
     2701 ctctacaaaa ggcgcgcgaa cttttcaata atgagaaata ttggaaaacg catgaagttc
     2761 ttgagggaac atggaaacat actgagggtg atgaaagagc tttgttaaac gggattatcc
     2821 ttgtcgctgc tgctttagtg cattaccaaa aaggagaaca agcaatctgt atttctataa
     2881 tgaagcgagc actagttaaa ctaaataatg catacggcaa ttatcatgac atagatatcg
     2941 actcattaaa aactcaagtt acaaatatag ttaattcatc taaagtctca agctttaaaa
     3001 tttaaggcaa tatactcaaa aaacactatt atcaagacat cggcaacgac atggcttatg
     3061 acaacaactt ggtttattga gtttgtctag ttcttcttac tctcattatg taggcggtta
     3121 caacaagacc ggcaagaatg gaaatcagta taaaaaaagt accctcatct ctcacagtgc
     3181 cctttggtaa gattccaaaa aatgtagaga aaagaagtgc taacatattg aatcattgat
     3241 attgatctat ttgggggaat taaagattac ttgaatttgt aaataataat aataaggtta
     3301 tcttttatta ttattatctt ggtcaatagt gaacccactg ctcatgatag agttaaagtt
     3361 gggctcgaaa tccatcaaca attggattca aaaaacaaat tattttgtaa ttgcaaaaca
     3421 gttgattcta ctgagcatga ttttaccttt aaaaggatct tgcgtccgac tcaaagtgaa
     3481 atggggtctt acgatcaagc tgcccttttt gaatcaaaga aaattaagac tgttaaatat
     3541 caatcctcca aaatttccaa ctgcttgata gaatcggatg aagagcctcc catgatggta
     3601 aatacagagg cgctcgaatt agtattggcc atatctcttg ctcttcattg taccattgag
     3661 gatgaattac acgtaatgcg aaagatagta attgatggtt cgaataccac tggatttcaa
     3721 agaacaatac tagttggtag aaacggattt ttagatgttg atggtattag ggtaggaatc
     3781 cagagcattt gcttagaaga agatgccgcc agaataatta atgaagttaa ggatgatgat
     3841 gagagcaaga tatttgctct agatagacta ggaataccac ttatcgaagt tgccctagaa
     3901 cctatttcta acactccttt gtttataaca aatgtagccc aaacgatagg gcgattacta
     3961 cgatcaacaa aaaaggtaac acggggactt ggaagtatta ggcaagatgt caacatttca
     4021 acaaatggtg gagccgtcgt cgaagtgaaa ggtgtgcagc aactatcgca gctggctctt
     4081 gttattgagt atgaaacaaa aagacaggac gggctaaatg taattgcaaa agaactaaag
     4141 agccgtaaaa tcgatgaatc aaaattcttg gataatatca cagatgttag tgatttaatg
     4201 aaacagtcat cctctaaagt agtaaaaaag atcctcggtg gtgattctag atttatgggg
     4261 tt
//
LOCUS       DASUMD010000038         3517 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_9934, whole genome shotgun sequence.
ACCESSION   DASUMD010000038 DASUMD010000000
VERSION     DASUMD010000038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3517)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3517)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3517
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9934"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            326..619
                     /locus_tag="VFX26_00955"
     CDS             326..619
                     /locus_tag="VFX26_00955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573073.1"
                     /translation="MATLMVYKRNSKFVDLSELVEDLSSLGLTGTLQEYYNKPLEKPV
                     KSIVAGPSFLQFLNRLFQIQITAGDIIHLESGNLGKYYMLSATGTWDEIIKLQ"
     gene            complement(742..1053)
                     /locus_tag="VFX26_00960"
     CDS             complement(742..1053)
                     /locus_tag="VFX26_00960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573074.1"
                     /translation="MKMITWCYNCQQQISFDNATRNRNGVAIPVDDYGNLHSCRHKKR
                     KPGFPSQKCFRCGQVIHFDKNYRSISGRYIPLDWNSGKRHDCNETPDLEIREHWLSKE
                     L"
     gene            1526..1795
                     /locus_tag="VFX26_00965"
     CDS             1526..1795
                     /locus_tag="VFX26_00965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573075.1"
                     /translation="MTSSNIYPLLYESKDKFIDKRNFLICKSCHWCATCFTNFNIPNT
                     CPLCGNNQIESMPVSAHESYRLVYDYIHGLTLEFWFDSNDGVFVN"
     gene            1792..2055
                     /locus_tag="VFX26_00970"
     CDS             1792..2055
                     /locus_tag="VFX26_00970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573076.1"
                     /translation="MNISEAESPYGIMAKTCGCENKKRKVTYSLIDSYHSLCHDKRDL
                     ILGQIEACQRLVKYTAQYDRDEIDKQAIEREIDELKMVLDLIQ"
     gene            2299..2475
                     /locus_tag="VFX26_00975"
     CDS             2299..2475
                     /locus_tag="VFX26_00975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573077.1"
                     /translation="MLKCKNCGEVFPGVYISEDTIKVSKIKTDSTTSHVCSRGHKNDY
                     LADDFMDWSGPETF"
     gene            2544..>3517
                     /gene="hflX"
                     /locus_tag="VFX26_00980"
     CDS             2544..>3517
                     /gene="hflX"
                     /locus_tag="VFX26_00980"
                     /inference="COORDINATES: protein motif:HMM:TIGR03156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HEX5573078.1"
                     /translation="MESLGNFNIVKCFTQKDLRHTQYGLGSGKVEEIKEYLHHAKSDQ
                     IIVDEHMTPKQIYNLEKATGIKVVDRERLILDLFYIRSTTSEAKLQIQLAEIKYELPR
                     IKENARLLTGKERPGKGGSGEYIVDVKFRDLKRRMGFILEKLAESRKKRELYHDQRVE
                     NRMPIVSLVGYTSSGKTTLFNLLTLESKETSENLFTTLSTTTRSFIINGQKILLTDTV
                     GFIRRLPTYMIEAFKSTLEESLQADMILLLIDSSDPADEIKTKYYSCMSTLQELNVNK
                     EKIVIVFSKIDKAEFDDVSRTFKELNIERPIFVSPKSGYGISKLTKSIS"
BASE COUNT         1190 a          585 c          654 g         1088 t
ORIGIN      
        1 tagaggtttt tcttgaggta atctctgcaa cattcatctg aacagaactc tagcttaccc
       61 tttactgtgc ttaaataaat cacaccgcta agtaaattgt tgaattcctt tccacaaata
      121 gaacaggaga tatacaaatg ctcattatat cgctcgttct ttaataagtg ttataatgcc
      181 attaccgaac aacatatcga atcgaaacct gcgtaaacta gatactcaag aaactcaaca
      241 taacttcgag aataaggtgt aacgtgtgca aacagggaaa tgttatattg tacttcgcgg
      301 tatataggaa cgaagacatt ttaccatggc aactcttatg gtctacaaga ggaattctaa
      361 gtttgttgat ttgtctgaat tagttgaaga tcttagtagt ctgggcctaa caggcaccct
      421 acaagaatac tacaataaac cactcgaaaa gccagtcaag agcatagtag caggaccaag
      481 tttcttgcaa ttcttgaaca ggttatttca aattcaaatt acagccggag atattataca
      541 tttagaatct ggaaatcttg gtaaatacta tatgctatca gcaactggaa cttgggatga
      601 aataatcaaa ttacaataat acacgtgtcc agagtaatcg cccatggctg ttcttgatgt
      661 gatgtgaggt attcctacgt cgctgtaata tgtgattcag ttcttgtaac ctgggacata
      721 tcttgctcca ttacattttt ttcataattc tttggatagc caatgctctc tgatctctag
      781 atccggcgtc tcgttacaat catgtcgttt gcccgaattc caatccagtg gaatatacct
      841 tcccgaaatt gacctgtaat ttttatcaaa atgtatgact tgtccacatc tgaaacattt
      901 ttgacttgga aatccaggct ttcgtttttt atgtctgcaa ctgtgaagat taccataatc
      961 atccactgga attgccacac catttctatt tctggttgca ttgtcgaagg atatttgttg
     1021 ttggcagtta taacaccatg ttatcatttt catttcatgc tatcctaata gttttgtttc
     1081 agtttgagaa cgtacaatta ttatttacta atcaagataa cgtctttgac tcatataagc
     1141 ctttaaaaat tatcagtaga ctgtgggagt cgatacagtg tatgaataag cttctcttaa
     1201 agaaaggatc gcgtggtcta agttaacaat ttcctgctgt cagtaacaag aaaatgtaat
     1261 taaagctaac tacaaagtta aacccataat tcccaagaat aggaaacttt cgtagattat
     1321 taagtaaaac aatagttatt atgttatgtt tgtctgttat atcgacaata ctcgtaatat
     1381 tctactagtt tattcgtatt ttctgagcca ttctgttact tgttcctaac acaaatatta
     1441 gatatgctta aatgcatcaa aactgaatat gattgatgtt aaataaagtt aatatgctaa
     1501 aagcgtacgg atatggttca ttattgtgac gtcttccaac atttacccgt tactctatga
     1561 aagcaaagat aagtttattg acaagagaaa tttcttgatt tgcaaatcat gtcattggtg
     1621 tgctacatgc tttaccaact ttaacattcc caatacttgt cctttgtgtg gtaataatca
     1681 aatagaatcg atgcctgtat cagctcacga gtcatacaga ctagtttatg attatattca
     1741 tggtttgacc ctagaattct ggtttgattc gaatgacggt gtctttgtaa attgaatatt
     1801 tccgaagcgg aatcacccta tgggattatg gcaaaaactt gtggatgtga aaataagaaa
     1861 agaaaagtga cgtattcgtt gattgatagt taccatagtt tatgtcatga taagagggat
     1921 ctaatattag gacagattga agcatgccaa aggttggtaa agtacacagc acaatacgat
     1981 agagatgaga ttgacaaaca agccatagag agggaaatag atgagttgaa aatggtcttg
     2041 gacctaattc aataaattca tgatttggtc attaaggctc tgtggatact agaacttgga
     2101 acattcaatt cttgttagtg ttcattaaac cattaaacta tgtcaggttt tagtaattaa
     2161 taccccgtaa atgtgacgta gacatattct atttctgatg attagagaca gttagttcat
     2221 ttatttgaaa attaccatag gtagatatta atagtatgaa gccgtatatg aattagttta
     2281 aacaaaatgc ctatgctgat gttaaagtgc aagaactgtg gcgaagtgtt tcccggtgtc
     2341 tacatatctg aagataccat aaaagtttcc aaaataaaga ctgattctac aacttcacat
     2401 gtgtgttcta ggggacacaa aaacgattat ttagctgacg attttatgga ctggtcggga
     2461 cctgagacat tctgacaact aaacaaaatg tcatactggt aacatatcct gatgatttca
     2521 gcatacagga agtaaaaggt ttggtggaat cattaggcaa ttttaatatt gtaaagtgtt
     2581 ttacccaaaa agatctgagg cacacgcaat atggtctagg atctggcaag gtcgaagaaa
     2641 ttaaagaata tctacatcat gctaaatctg accagattat tgttgatgaa catatgacac
     2701 ccaagcagat ctacaattta gaaaaggcaa caggtataaa ggtagtagat agggaaaggc
     2761 taatcctcga cttgttttac attagatcta ctacgtcgga agcaaaatta cagattcagc
     2821 tcgcagaaat taaatacgag ttaccgcgga taaaagaaaa tgcgaggctg ttgacaggca
     2881 aagaaagacc aggaaaaggt ggaagtggag aatacatagt tgacgtaaaa tttagggatc
     2941 tgaagaggag gatggggttc attttagaaa agttggcaga atccagaaaa aaacgtgagc
     3001 tttaccatga tcagagagta gagaacagaa tgcctatagt ttctctagta gggtatacaa
     3061 gttcgggcaa aactacccta ttcaacctgc taactctgga aagtaaagaa acatctgaaa
     3121 atttatttac cacactctca actactacaa gatcctttat tattaatgga cagaaaattt
     3181 tgcttaccga tacagttgga ttcattagaa gactccctac ttatatgatt gaggccttta
     3241 agtcgactct ggaagagtct cttcaggcag acatgattct acttcttatt gattcatcag
     3301 atccggcgga tgaaataaaa acaaagtatt acagctgcat gagcacctta caagagctga
     3361 atgtaaataa agaaaaaatt gtaattgttt tttcaaaaat agacaaagct gaatttgatg
     3421 atgttagcag aaccttcaaa gaattaaaca tagagcgtcc aatatttgta tcacccaagt
     3481 ctggatatgg tataagtaaa cttacaaaat caatatc
//
LOCUS       DASUMD010000039         2458 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_894488, whole genome shotgun sequence.
ACCESSION   DASUMD010000039 DASUMD010000000
VERSION     DASUMD010000039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2458)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2458)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2458
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_894488"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(402..1064)
                     /locus_tag="VFX26_00985"
     CDS             complement(402..1064)
                     /locus_tag="VFX26_00985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573079.1"
                     /translation="MDKNQGIPLFPGGVTAISDIIKVVADIGNQIPDKSWMLYLLELF
                     NIRNIPVELNLICQFDNQDYFEAIFQGVNRYRFKKVLPVVGHSYLRMIMMYKKNRQIR
                     YTLTDQLTGETEIFDFPLGMNFDYIGANQFTGIEWWNKTGNFPYSIRYKVEVSQLMFG
                     FLDKDDPESITFIPHNSLIPNNDNSGTGYPVSFQNVMLKEGCVCYSVEAGNCSNGIHY
                     SI"
     gene            complement(1271..1915)
                     /locus_tag="VFX26_00990"
     CDS             complement(1271..1915)
                     /locus_tag="VFX26_00990"
                     /inference="COORDINATES: protein motif:HMM:NF020893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VTT domain-containing protein"
                     /protein_id="HEX5573080.1"
                     /translation="MITLDELLLLYDYFGYLGILFVSFIISILFFLPIPYFPLPLIAA
                     FNKNLDPHIISLSGTIGYVAAKMIIFYLAYSGRNIIAKKSKGRTMSLQKLLGKYGWIG
                     ALVAPIIPFSENFIYITLGLTKYNPWKFAVSLFVGVLLYNEFIVWIGVLLGRPFVQSI
                     ISEFTNTDNPTSIIIAIILSSTGILITFYLLVKINWNKVIGNRFPWTRTDNTNE"
     gene            2122..>2458
                     /locus_tag="VFX26_00995"
     CDS             2122..>2458
                     /locus_tag="VFX26_00995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573081.1"
                     /translation="MFFDTISEQLFHEIPMAPIVRSQVLLNIERFEIGQSYVTAKIQN
                     RYEENVMINIQGGRPGIELQESLFIIKNAENQVPLQYAYIRANLIQTGKIFVRKLPVI
                     GMRDWLLIYE"
BASE COUNT          879 a          422 c          387 g          770 t
ORIGIN      
        1 tcaaattcac tttttgcttt atcggttaga ttttttactt ctggaagact tccaaatttt
       61 tctaccccct tctttacccc tcaaaaaaat gtatcccaac ccaaacctac catcgccaaa
      121 ataactagaa tagctaatat aagaacaatc catcctatca attaaaaata ctttcagata
      181 gagtatgctt taaactttga cttaattgaa tattcaggaa ttcatgcgag ttatttaatt
      241 ctctgactaa aaatcaaatt tatttatgcc ataggcatca taataatatt caattcaatt
      301 gtttacaatg tgataggtaa aataatccgc ttgagatcgg agttaattta ttatagaaga
      361 ttgatactaa atattgaaca aaaaagtcga gtatattccc attatatact ataatgaatt
      421 ccattgctac aattgccagc ttcaactgaa taacaaacgc aaccctcttt taacattaca
      481 ttttgaaaag atactggata acctgttccg gagttatcat tgtttggtat caatgaatta
      541 tgaggaataa aggtaattga ctcagggtcg tccttatcta aaaatccgaa catgagttga
      601 gatacttcta ctttatatct tattgagtaa ggaaaattac ccgtcttgtt ccaccactca
      661 atcccagtaa actgattcgc tccaatataa tcaaagttca ttccaagggg aaaatcaaag
      721 atttctgttt ccccggtgag ttgatcagta agagtatatc taatttgtct attttttttg
      781 tacatcataa tcatcctaag atacgaatgt ccaaccactg gtaatacttt cttaaacctg
      841 tacctattaa ccccctgaaa aattgcttca aaataatctt gattgtcaaa ctgacaaatc
      901 agattcaatt caacaggaat attccgaata ttaaacaatt ccagtaggta cagcatccac
      961 gatttgtctg gaatttgatt tccaatatcg gcaactacct tgatgatgtc ggatatagca
     1021 gtcacacctc caggaaataa tggaatacct tggttcttat ccaatatacg acaaaatgag
     1081 cctacccaat aatgcaatat gtttagaaat aacatgttat ataattaaga tttactaata
     1141 cctttctcga cagaatcaat gcgtgcaata tcaagtacca atttgatata ctgcaaagtg
     1201 atatcctgcc aagtaactgc aaaacattaa attagtaagt atggccaata attaatgcag
     1261 atgcataatc ttattcattc gtattatcag ttctggtcca tggaaaccta tttcctatga
     1321 ccttattcca atttattttt actagcaagt agaaagtaat taagattcca gtgctactta
     1381 gaattatggc tatgataatg ctggttggat tgtctgtgtt cgtaaattct gaaataatgc
     1441 tttgaacaaa tggtcgcccc aaaagcactc caatccatac tataaactca ttatataata
     1501 gtactccaac aaatagcgat actgcaaact tccatgggtt gtattttgtt agtcctaatg
     1561 tgatgtaaat gaaattctca gaaaatggga ttattggagc cacgagtgct cctatccatc
     1621 catatttgcc caagagtttt tgaagtgaca ttgttcttcc ttttgacttt ttagcgatga
     1681 tattgcgtcc ggaataagca agataaaaga tgatcatttt tgctgcaaca taaccaatag
     1741 taccagaaag tgagatgata tgaggatcca aattcttgtt aaatgctgct ataagaggaa
     1801 gtggaaagta gggtatcggc aaaaagaaca atatactgat aataaagctc acaaataaaa
     1861 tgcctagata tccaaagtaa tcgtatagca acagcagctc atcaagagtg atcaagacag
     1921 gtagactaag ttaaaataat atattaaagt gttataaaaa tcggaatcat atttgcatta
     1981 caaaatatag taaggaagag agtgagacaa ctaacattga atctataagt agataagctg
     2041 ttgaatttag acagacttat cgctcaacaa ttatggaaaa tcgtatatag aatagaatgc
     2101 acataactgc tgatttgaaa tttgttcttt gacacaatat ctgaacaact atttcatgaa
     2161 atacctatgg cacctattgt cagatctcaa gtattattga atatagagcg ctttgaaata
     2221 ggacaaagct acgttaccgc gaaaatacaa aatagatatg aagaaaatgt tatgattaac
     2281 atacagggag gtcgacctgg catagaactt caagaaagtc tttttataat taagaatgct
     2341 gaaaatcaag ttcctttgca gtacgcatac ataagagcaa acttgattca aacagggaaa
     2401 atatttgtga gaaagcttcc agttattggc atgagagatt ggttattaat ctatgagg
//
LOCUS       DASUMD010000040         3337 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_120481, whole genome shotgun sequence.
ACCESSION   DASUMD010000040 DASUMD010000000
VERSION     DASUMD010000040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3337)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3337)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3337
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_120481"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            82..234
                     /locus_tag="VFX26_01000"
     CDS             82..234
                     /locus_tag="VFX26_01000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573082.1"
                     /translation="MYKHSIRHPTKLNEKTVNRKRGYGRKLIMIRPHYYLLIKTTVLK
                     LANATS"
     gene            complement(314..817)
                     /locus_tag="VFX26_01005"
     CDS             complement(314..817)
                     /locus_tag="VFX26_01005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HEX5573083.1"
                     /translation="MNKSKSKTVNILDIDTGIPRENLKKIANILNDDLADEYVLLTKT
                     RNYHWNVEDPRFNDLHKFFEEQYELISASIDEIAERVRAVGGKTRATLKEFINSSQIG
                     EDVGSYPEADTMLGNLLSDHETIIKTLRKNIKECQDLNDEGTANFLTDKMEEHEKMAW
                     MLRSFIV"
     gene            893..1240
                     /locus_tag="VFX26_01010"
     CDS             893..1240
                     /locus_tag="VFX26_01010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573084.1"
                     /translation="MSMAFENLDANSIIFFLVGLLISTVVIYLITFLLGHRRSIKLAI
                     FTAIIGSIVYGIAYILLGNGFLSAVLGGIAWLLALKSIYRMGWLKALIVAVIVWIITT
                     AISTILPTSIGPL"
     gene            1467..1997
                     /gene="hsp20"
                     /locus_tag="VFX26_01015"
     CDS             1467..1997
                     /gene="hsp20"
                     /locus_tag="VFX26_01015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaeal heat shock protein Hsp20"
                     /protein_id="HEX5573085.1"
                     /translation="MWKDPWGFRDRFFEQIDKEFSDAEDMLNRMFKTVTETGTAGSHT
                     QPYFYGYQITVGPEGKPHIREFGNVRPSQKGLIEQSAIRQPLVDTSINEKENTLVITA
                     EMPGITKEDVKVTMEEGLVTIHAEKGNKKYHTELPVDNELDSDSTKASYINGVLELKI
                     QFKKPIKSKSKEIKVE"
     gene            2394..2789
                     /locus_tag="VFX26_01020"
     CDS             2394..2789
                     /locus_tag="VFX26_01020"
                     /inference="COORDINATES: protein motif:HMM:NF016050.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclophilin-like fold protein"
                     /protein_id="HEX5573086.1"
                     /translation="MKKKINVLFPDKDREISIELDDSRSPKTVQAILENLPIQVGITR
                     WGDELYTEKTQIITEEEDAKREVNFLDVAYWPEGNALCLFYGPTPISKDGQILAYSPV
                     NIVGRIIPHDNEKDDLLEKIKENTRVIFK"
     gene            complement(2900..>3337)
                     /locus_tag="VFX26_01025"
     CDS             complement(2900..>3337)
                     /locus_tag="VFX26_01025"
                     /inference="COORDINATES: protein motif:HMM:NF028479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-bladed beta-propeller"
                     /protein_id="HEX5573087.1"
                     /translation="DNGTFIGTIGSKGTEPGKFSTPHGIAIDPNNNMYVTDMKNYRVQ
                     VFDSKDSFVRQWKSMGSGADQFSETVPGIAIDSNNHVYIVDKINSRVQMFDNTGNHLS
                     SWGSDGKGPQQLHKPEDIAVGSAGDIYVTDTRNSRVQVLSVVE"
BASE COUNT         1132 a          594 c          586 g         1025 t
ORIGIN      
        1 tactaatcaa agggatccat ttgctgccct aaactaatca tcccttacta ggtcagtgtt
       61 ccactctatt tatcttggtg gatgtacaag cattcaataa gacacccaac aaaacttaat
      121 gaaaagactg taaatcgaaa aagaggatat ggcaggaaat taataatgat caggccacac
      181 tactatttac taataaagac aactgtactg aaacttgcaa atgcaacttc gtagcgagac
      241 agaaagagga gttaagtgga agcactagaa attaggttaa aaaatcagac cagaattagc
      301 gacatgaatt gtcttacact atgaaagatc tcaacatcca tgccattttt tcatgttctt
      361 ccattttgtc cgttaaaaag ttagcggtac cttcatcgtt tagatcttga cattccttga
      421 tattctttct taatgttttg attatggtct catggtctga taataggttc cctaacatag
      481 tatctgcctc aggatatgaa ccgacatctt ccccgatttg ggaagaattt atgaattctt
      541 ttaacgtagc cctagtctta ccaccaacag cccttactct ttcggcgatt tcatcaattg
      601 aagctgatat caattcatac tgttcttcaa aaaacttgtg gagatcattg aatcttggat
      661 cctctacatt ccaatggtaa tttcttgtct ttgtcaagag aacatattca tctgccaaat
      721 cgtcattcaa gatattggca atctttttta aattctcacg aggaattcct gtgtctatgt
      781 ctaaaatatt tactgttttt gatttggact tgttcataca attaattggc ttacaaagta
      841 taaaacggtt gaaacaatca aatcttttat ttaggctatt ttatacattc tgatgtcaat
      901 ggcattcgag aatcttgatg ctaattcaat cattttcttt cttgtaggat tgctaatttc
      961 tacggtggta atttatctaa ttacattcct tttaggacat agaagaagca taaaattagc
     1021 catatttact gcaattatag gttcgatagt atatggcatc gcatacattc tactaggaaa
     1081 tggttttctt tctgcagttt tggggggaat agcctggtta ttggccctaa aatctatcta
     1141 tagaatgggt tggctaaaag ccttgattgt ggcagtgatc gtttggatta tcacaactgc
     1201 aataagtacc atattgccca catcaatagg acctctctaa cagcaatcca gaatagatct
     1261 ttaaaaattg aagggtcaag tgggcctata atttcaatcg taatagtact gtatggtact
     1321 acctgtgatt gccattcatt cgtcatgtag aatatcctaa tgagcaagtc tacaatttat
     1381 cgcaatattt gtaagttgca ggtcttcaat aaagaaaaat atatatattg taatatacat
     1441 tacataatgt caggtgatat gcaaaattgt ggaaagatcc atggggattt agagatagat
     1501 tttttgaaca gatagataag gaattttcag acgcagaaga tatgctgaac agaatgttca
     1561 aaacagtaac tgaaactggt actgccggct cacatacaca gccttacttt tatggatacc
     1621 aaatcactgt cggacctgag ggtaaacctc acatacgaga atttggaaat gtcaggcctt
     1681 ctcagaaagg attgatagaa caaagtgcaa tccgccagcc acttgtagat acctcaatta
     1741 atgaaaaaga gaacacactg gtaataacag cagagatgcc cggtataaca aaggaagatg
     1801 taaaggtgac aatggaagaa ggattggtaa caatacacgc tgaaaaagga aacaagaaat
     1861 atcatacaga gctcccagtc gataatgaac tagactctga ttctacaaag gccagctaca
     1921 taaacggagt attggaacta aagatacagt tcaaaaaacc tataaagtca aaatccaaag
     1981 aaataaaggt tgagtagttc tgctagtcaa ctaaattatt tttttttctt gtttatttta
     2041 ggaagtgatt aaatggtatc caataggact aagcaaatat ctcaaatggt agaagccagc
     2101 tccaaattta caggagtaac tttttgcgat actgttctgg aatcaagtaa ggataaaaaa
     2161 gttttatcac aaagcagagt aaactccatc gataaaagtc agacaaaact tattcctagc
     2221 agaattgatt ataacttttt taattattgt tctacctgcg aattgaagta cccaaaacag
     2281 attttgcgtt gtaaggattg taatcagaag gttagaacca gaccgtggca tcgttcaaag
     2341 ataattgacc gcaagagaat ttaatacctt ttacgttgta ctcggttgat actatgaaaa
     2401 agaagatcaa tgtattattt ccagataaag acagagagat ttcaatagag ctggatgatt
     2461 cacgttctcc aaagaccgtt caggcaatcc ttgaaaattt acctatccaa gttggcatca
     2521 ctagatgggg cgatgagcta tataccgaaa aaactcaaat cataacagag gaggaagacg
     2581 ctaaaagaga ggtaaatttt ttggacgttg catactggcc agaaggcaat gcgttatgtc
     2641 tattttatgg accaacaccc ataagtaaag atggacaaat actggcttat tctcctgtaa
     2701 atatagtggg aagaataatt cctcacgata atgaaaaaga cgatttgttg gaaaaaatta
     2761 aagaaaatac aagagtcatc tttaagtgaa tatagtacta atatgctact catagtactg
     2821 atatagttat tactggatcc ttgacgcatt ttggctaaga attttatcaa attttaaatc
     2881 aaggctaaaa cagttcgtac tattctacta cactcaaaac ctgaactctg gaattccttg
     2941 tatcagtaac ataaatatct cctgcactac caacagcaat atcttctggt ttgtgtaact
     3001 gttgaggacc ctttccatcc gatccccaac tagataaatg gtttccggta ttatcaaaca
     3061 tttgaactct agaatttatt ttatctacaa tatacacatg attattgcta tcaattgcaa
     3121 taccgggaac ggtttcagag aattgatctg ctccacttcc catagatttc cactgtctaa
     3181 cgaaagaatc cttactatca aacacctgaa ctctgtaatt cttcatatca gtaacgtaca
     3241 tattgttgtt aggatcaatt gctatgccat gaggggtact aaatttacct ggctctgtac
     3301 cttttgatcc gatagtacct ataaaagtac cattatc
//
LOCUS       DASUMD010000041         4948 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_674049, whole genome shotgun sequence.
ACCESSION   DASUMD010000041 DASUMD010000000
VERSION     DASUMD010000041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4948)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4948)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4948
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_674049"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            499..1176
                     /locus_tag="VFX26_01030"
     CDS             499..1176
                     /locus_tag="VFX26_01030"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX5573088.1"
                     /translation="MEHVIRTAKKSHYDPGVIVIDAYSSDRTVIIAHDIGARVIEQGN
                     RMFPAKGIAMKKGIKEAISSNASIALFLDADIKNLTPEWIDKLIDGCINCDMVRGYYQ
                     RHSRDAPVTKLIAKPMISAFFPELSHFEQPLSGEVCARTEVWKRLLKQNPPDGWGIDV
                     WFLIEAAMAGYQIKEIFLGTKEHTSFEDYREDVGKLAKMAEQVEFTIIKEAIKYGRID
                     LHKDVKT"
     gene            complement(1323..1790)
                     /locus_tag="VFX26_01035"
     CDS             complement(1323..1790)
                     /locus_tag="VFX26_01035"
                     /inference="COORDINATES: protein motif:HMM:NF019928.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HEX5573089.1"
                     /translation="MERKHDIEVRKTKIIEGSLKVVFSALTEPEKLAEWFQDDANLDV
                     RVGGQIRLVTLKEKHPEWNLDRDYYMEGTIMEIVPNKRLSYSWKFKDTPNFPATLVTW
                     ELEQINPNKTLVKLSHVGFSGKEKGNFSVESHIQGWTEALDKLAGYCESPRSL"
     gene            1954..2223
                     /locus_tag="VFX26_01040"
     CDS             1954..2223
                     /locus_tag="VFX26_01040"
                     /inference="COORDINATES: protein motif:HMM:NF026297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEX5573090.1"
                     /translation="MPYRSREEIFASILDTTGSEAGITRSKIMFGSYLTYAQVVEYSK
                     ILIQRGLLEHDPIDRTYKTTPSGFTFLQLQNELNQMIKISNPSRI"
     gene            2393..2881
                     /locus_tag="VFX26_01045"
     CDS             2393..2881
                     /locus_tag="VFX26_01045"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ester cyclase"
                     /protein_id="HEX5573091.1"
                     /translation="MTSTQEDNLRLVKYAMDALNTGDTSRVSEFISLTYFNHESQMDP
                     VRSKMRGPQEFIDTVVNLRKAISDLHYELLESVASDEKVVSIVSVRGKHTGSFFGFIP
                     PSGNKISYQAVHIFTIGDDRKITEHKAIRDDLALMYQLGVVKGTGLQYENLLKEWKRV
                     EW"
     gene            3295..3648
                     /locus_tag="VFX26_01050"
     CDS             3295..3648
                     /locus_tag="VFX26_01050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573092.1"
                     /translation="MGKLNSYTSIELRVSMSYDSRNIINRFLQLNRLNSSINHLPTVI
                     EPFQMYPPSLIQKNRNRLASGGIVNKIPDLPSTSSMGTELLDDLGIRQEEFLKKIRKH
                     PQNLRMYNSQYETEK"
     gene            complement(3831..4049)
                     /locus_tag="VFX26_01055"
     CDS             complement(3831..4049)
                     /locus_tag="VFX26_01055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573093.1"
                     /translation="MLFRNSIKSLAIPDVLKDLITKHSLNRKQIINMKVDDLASVLEC
                     DFETAKIIQNSVRSSSNKSMLHEMTELA"
BASE COUNT         1661 a          861 c          843 g         1583 t
ORIGIN      
        1 aagaatgaca gagtcagatt actttatttt ctaatcgaag aaaaaaaatt cacataggaa
       61 ttaatttggt tggccttatt tggtttccgg aacatcaaat tttcccctca aagctgcgac
      121 caattggtcc tatcaaaatc agctcatgtc atagtttatg gcatatgctt tcattcattc
      181 agtattccat ttctttgtct aaatcagagt agcctggaag taagttctgg aaaaatcaat
      241 acaatctgat ttggttgata tgaaaagtag aaatcggtgt ttttcattcc agaaaatctc
      301 ttcaatttga acccaaaaat aatgtttaat tgagatatcc gagataatct ctctaatgat
      361 aaatctaagt atgccacttt tttgcaagtt tctaatttgc aagaatctta aagtatgtat
      421 taacttacaa atggtatgac tcagggggac gtcccaaaaa tagtggtaat atttccaacc
      481 aaaaatgaat aagctactat tgaacacgtc attaggactg caaaaaaaag tcattacgat
      541 ccaggagtga tagtaattga cgcatactcg tcagacagga cagtgattat agctcacgat
      601 attggagcaa gagtgattga acaaggtaac agaatgtttc ctgcaaaggg aattgcaatg
      661 aaaaagggaa ttaaggaagc aatcagttct aatgcaagta tcgccctatt tctcgatgca
      721 gatataaaaa atttaactcc agagtggata gacaagctga tagacggatg tattaattgt
      781 gacatggtac gaggttacta ccaaagacat tctcgagatg ctcctgtaac taaacttatt
      841 gctaaaccaa tgataagcgc cttcttccct gagctttcac attttgagca acctctaagc
      901 ggtgaggtct gtgcacggac cgaagtctgg aaaagactat tgaaacaaaa ccctcctgat
      961 gggtggggaa ttgatgtctg gtttttgatt gaagctgcca tggcaggtta ccagataaag
     1021 gaaatattcc ttggtactaa agagcacacg tcatttgaag actatcgtga agatgttgga
     1081 aaattggcca agatggcaga acaagtagaa tttactataa ttaaagaagc aattaagtat
     1141 ggaagaatcg acttgcataa ggatgtcaaa acataatatc aagggaattt tgttctcaac
     1201 tcaaccttga aagtactata cagtcccgag ttacagtttt catacactca aattgaaatg
     1261 attacaagat aacatgtcca accaaaatca agatgacaat cactaggcaa atctcagtat
     1321 ttttaaagag acctaggaga ttcacagtag ccagcaagct tatccaatgc ttctgtccat
     1381 ccttgaatat ggctttctac cgaaaagttt cccttttctt ttcctgaaaa tcctacatgg
     1441 gatagcttta cgagcgtttt attaggatta atctgctcca attcccacgt cactagagtt
     1501 gcagggaaat ttggtgtatc tttaaatttc caactatatg ataatcgttt attaggaaca
     1561 atttccatga tagtcccttc catatagtaa tccctatcca aattccactc aggatgtttt
     1621 tctttaagag taaccagtct gatctgtcct ccaactctga catccaaatt tgcgtcatct
     1681 tgaaaccatt cagccaattt ttctggttca gttaaagcac tgaaaacaac ttttagcgat
     1741 ccctcaataa tctttgtttt tcttacttca atatcatgct tcctttccat cttgacaaca
     1801 attaatcctc attaatctat tttattaagg atcggagaag gaaggaatcc aaccacaact
     1861 agtttaatat aagagtttta atctggaagg ataatagata ttaatattta agagattcta
     1921 aatgcatatt aacgatcaag tcctattaac tgtatgccat atcgtagtag agaagaaatt
     1981 tttgcatcta ttcttgatac taccgggtct gaagcaggaa tcactcgcag taaaataatg
     2041 tttggatctt acctcacata tgcccaggtt gtagaatatt caaagatctt gattcaacgt
     2101 ggattgcttg aacatgaccc tattgatagg acatataaga caactcctag cggatttacc
     2161 tttctacaat tgcaaaatga attgaatcaa atgataaaga tttcaaatcc atctagaatc
     2221 tgaaagtttg aagagcaaac aatattatga ttttgttctc aaaaaaagat ttagactcct
     2281 ctacataatt acttatctac ttatactttc tcaccagagg gatgtttatg gtaacgattt
     2341 ctaccctctt tccaggaagt gatagataac aagtggtagg tcaaggagtg tcatgacgtc
     2401 cacgcaggaa gataatttgc gactcgtgaa atatgctatg gatgcgctta atacaggaga
     2461 tacatctaga gtctcagaat ttatcagtct cacatatttt aatcatgaat cacaaatgga
     2521 tccagttaga tcaaaaatga ggggaccgca ggaatttatt gacactgtag tcaatctacg
     2581 gaaggccatt tcggatttgc attatgaact gctagaaagt gtagcatcag atgaaaaggt
     2641 agtttcaata gtatctgtta gaggtaaaca tactggtagc ttctttggat tcattccgcc
     2701 atcagggaac aaaatttctt atcaagctgt gcacatattt acaattggtg atgatagaaa
     2761 aataactgaa cataaagcga tccgagatga tttggcattg atgtatcagc ttggagtcgt
     2821 gaagggtaca ggtctacaat atgaaaactt actaaaagag tggaaacgag tggaatggtg
     2881 atgaatatac aaagtgtttt aaaagtgtga aattcgacaa tctacaatta gaaactgtct
     2941 tcaaacttaa tttagcgtag caatatggta tgggcagacg ggtgcgctac tgcacatccg
     3001 accttaattt ctcttcatcc acatatttca aacatggaca agcatctgac tttgagatgt
     3061 ggtttacgca tcttctttga tgatgcatgt ccatccaatg ccactttata tcgtggccac
     3121 aaatacacgt tgacataatt ctttcttcat ttaataatat aggctacggg acttatctaa
     3181 ttttcggaac tttgttaatc cgttaatctc caaactcgag cgtgtacgcg ccattacgct
     3241 aggatgaaaa gtgagggaat tggagaccca gaaatgaaca gctaatcgat agtgatgggc
     3301 aagttaaact catatacatc aattgaatta agagtaagta tgtcatatga ttcaagaaac
     3361 attataaaca ggtttttgca gctgaataga ttgaattcct caataaacca tttgccgact
     3421 gtaattgagc ccttccaaat gtatcctcct agtctaattc aaaagaatag aaatagattg
     3481 gcttcagggg gtattgtcaa caaaattccg gatcttccaa gtacctcttc tatgggaact
     3541 gaattgttgg atgatttggg tatacgtcag gaggaattcc ttaaaaaaat aagaaaacat
     3601 cctcaaaacc tgagaatgta caattcacaa tatgaaactg aaaaataagg cttaggcaag
     3661 ctgtatttcc tacaattgaa attttatttt gattcttttt gcgatcgaac tcgatatgag
     3721 atagaattat ccgacagaat tgaaaatgca tattcctaga ttaactaaac cttattctag
     3781 aaactatcct cagaagaata acggtggtta aaaaaatgat gtcttctttc tcaagccagt
     3841 tcggtcattt catgtaacat tgacttattt gatgaacttc tcacagaatt ttgaattatt
     3901 ttcgcggttt caaaatcaca ttctagtaca gacgcaaggt catctacctt catattaata
     3961 atttgttttc tattgagcga atgcttcgta attaaatcct tcagaacatc aggaatagct
     4021 aaagatttta tgctatttct aaataacatg gataataata gtatctatct tatataagat
     4081 ttttctaatg aattacttta gtcaatataa cttaggttac aataaatttg atcaattatt
     4141 gaattttttt atcaagattt tcataaaaaa ttaataaatt gggcatcaag attagaataa
     4201 tttacgctta gcctgatatc tacttaaatt aggctgcata ttcattaatt tctataatcg
     4261 ctacgaaaat ctaaattcaa aaataacttt ttccctcata tctcttcaga tacttcgttt
     4321 atacttgctg aaaacggatt ttgtactcca aaagatatat gctgaaagtt tctttctggc
     4381 gccaaaactc tcttaccagt ttttgtagta atacactata atagactatg ataaactata
     4441 tagaattcct tcactaatat ccggcttagt tttctatgcg tccagcatac gtagcaacaa
     4501 atccaccacc aagaagagtt atgtattttt aggactactt ggagactcgg agtccaagtt
     4561 attcatattt cctggatcat tgaagtagta ttcgaaagtc ttttcaaatc taatttcgta
     4621 gaaattcctt acgtcctatc atggattgcc atactcatag attatctcat aataaaaagt
     4681 taatcgaata gaatagtatt taccaactta tagtaatcta ctattgtcat catgactcta
     4741 caaagagttt ggagagtatc ttgaagtatt gttattactc tattacaaaa gtagattatg
     4801 agactttaga tctcatattt atttactaat tagagtatca atattttatc aacccgagag
     4861 ttttcactcc gatttcttat ctagtacatt tttcagtaga aaaatcatag actaattttc
     4921 tagtcgatgc tattggaatt cattaatt
//
LOCUS       DASUMD010000042         2265 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1337566, whole genome shotgun sequence.
ACCESSION   DASUMD010000042 DASUMD010000000
VERSION     DASUMD010000042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2265)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2265)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2265
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1337566"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..426
                     /locus_tag="VFX26_01060"
     CDS             <1..426
                     /locus_tag="VFX26_01060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HEX5573094.1"
                     /translation="YQGAINTKQAFLGDVIVSSSTGEKVALISVPIYLNKDPSLLGIW
                     SGTLNLSKFNNILQSLSLPNDLRVVYVDGKGQKIADSNSLLSNKSESFADLNSFKSGK
                     SGKSGNTSEVINGKEFLVSYAPVDVLSKTWIVMVMMQPG"
     gene            complement(491..823)
                     /locus_tag="VFX26_01065"
     CDS             complement(491..823)
                     /locus_tag="VFX26_01065"
                     /inference="COORDINATES: protein motif:HMM:NF012314.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEX5573095.1"
                     /translation="MQHLQPYQFDKLLSEAKINLVMFYTDWCPFCQKFKRTFETFAST
                     YNDNINLCASMINDDDNPLWDRFSIDTVPTLIAFNKSEIIARRDSKMGFGLNKSDLDS
                     ILKEISGQ"
     gene            complement(984..1424)
                     /locus_tag="VFX26_01070"
     CDS             complement(984..1424)
                     /locus_tag="VFX26_01070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573096.1"
                     /translation="MNTKKGMSLAVMFLAAAIIFVSSTPMANNAFAQTEGEEDLVPTE
                     LEDNSAQTQGKDYSGNKNYENFLNCLSDASGESGIPAGDKIVNCLGESGYIQGSSDAS
                     NAVDTENETENVQVSVVGDESDEDEDEDEDEDEDEDEDEDEDEE"
     gene            complement(1737..>2265)
                     /locus_tag="VFX26_01075"
     CDS             complement(1737..>2265)
                     /locus_tag="VFX26_01075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573097.1"
                     /translation="GAQSARCLIQYMEDKKDPEFDLILFYSNTKLSVENADSMIGDVE
                     HHPIDSLNVIYYNWLIDMAKKLENVKVIFTFTREQEIPTASKDTRIVFRKGRFFLNPD
                     GSSERTLLKYGHNIETSFNPICGSSAFINGTVRLPDGKINKGKGILQNLMELEGVKPE
                     KTDKEQFYLQQVGAN"
BASE COUNT          675 a          436 c          356 g          798 t
ORIGIN      
        1 tatcaaggag ctattaatac aaaacaggca tttcttgggg atgtaatagt atcttcctct
       61 actggtgaga aggtagctct tatttctgtt ccaatatatc tgaataagga tccatccctc
      121 ttagggattt ggagcggtac attaaacctt agtaaattta ataacatact tcaatcattg
      181 agtctcccaa atgatttgag agtagtatac gtggacggta agggtcagaa aatagctgat
      241 tcaaattctc ttttgtcaaa caagtctgaa tcttttgcag acctaaatag cttcaaatca
      301 ggaaaatctg gaaagtctgg aaatacttca gaagtgatta atggcaaaga atttttggtc
      361 tcatatgctc cagtagatgt actttctaaa acatggatag ttatggtaat gatgcaacct
      421 ggataaccat aactcatcta ttaatcacga tgcttcaact atgataatca tgatacagaa
      481 ccgcgagaca ttattgtcct gatatctctt ttagtataga atcaagatct gatttattta
      541 aaccaaatcc catttttgaa tctcttctcg caataatttc actcttgtta aaagcaataa
      601 gtgtgggaac ggtatctatt gaaaatctat cccacaaggg gttatcatca tcattaatca
      661 tggaggcaca aagattaatg ttatcgttat aggtacttgc gaaggtttca aatgttcgtt
      721 tgaatttctg acaaaaagga caccaatcag tataaaacat gaccaaattg atttttgctt
      781 cagatagtaa tttatcaaat tgatatggct gaaggtgctg cactagtcat ctacatgaat
      841 attggatatt ataagtattc tataccagaa ttaacgtccc gtctttggtt ggaccactac
      901 ggaaatgaat tagattgaga aataatgctt gctactaaaa aagaaagaaa gggaaacttt
      961 ctggtatcaa tttcattgct agtctattct tcatcttcgt cttcatcttc gtcttcatct
     1021 tcgtcttcat cttcgtcttc atcttcgtct tcatcgcttt catcacctac tacacttact
     1081 tgcacatttt cagtctcatt ttctgtatct acagcgttac tagcatcgga acttccctga
     1141 atgtaaccac tttctcccag acaattcact atcttatcac cggcaggaat tccgctttcc
     1201 ccgctagcat cggacagaca atttaggaaa ttttcatagt ttttgtttcc tgaataatct
     1261 tttccttgtg tttgtgctga attatcttcg agttctgttg gaactaaatc ctcttctcct
     1321 tcagtttgtg cgaaagcatt gtttgccata ggagttgacg atacaaagat gatagctgct
     1381 gcaagaaaca tgacagcaag tgacattcct ttcttcgtat tcatatgtcg atatcttcta
     1441 aaagctaaca caattaactg ttgactcaat atcttatagc taaatcttcg tatcatttat
     1501 tcaataatca tttttcaatt tgacccatat actttacact ttgtgtactt gatatcagat
     1561 tatctaatac ttctcaatgc attacaatta atgtctgatt ttcaacgcat tcctttcagt
     1621 tagcgataga gaagaattct tgttctagca ataatgtgag acaagatatc agttgataat
     1681 agattcttta ggaaataatt tctaatattt taaagctaaa gctttttctc atttcgctaa
     1741 tttgcgccga cttgttgtag ataaaactgt tctttatcag tcttttcagg ctttactcct
     1801 tccagttcca tcaaattttg taaaattcct tttcctttat ttatcttacc atctggtagc
     1861 cttacggtgc cgtttatgaa cgcgctgcta ccacatattg gattaaatga tgtttctata
     1921 ttgtgaccat atttaagtaa agttctttct gaggaaccat caggatttag gaagaatctt
     1981 cctttcctaa atacaatcct ggtatctttg gatgccgtag gtatctcttg ttctcttgtg
     2041 aaagtaaaaa tcaccttcac attctcaagt ttttttgcca tatctatcaa ccaattatag
     2101 taaatcacat tcagggagtc aataggatga tgttcaacgt caccaatcat actatccgca
     2161 ttctcgacgg ataactttgt gttactgtaa aatagtataa gatcaaactc aggatccttc
     2221 ttatcctcca tatactggat caaacatctt gcagattgtg ctcca
//
LOCUS       DASUMD010000043         3275 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_784934, whole genome shotgun sequence.
ACCESSION   DASUMD010000043 DASUMD010000000
VERSION     DASUMD010000043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3275)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3275)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3275
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_784934"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..874)
                     /gene="gatD"
                     /locus_tag="VFX26_01080"
     CDS             complement(<1..874)
                     /gene="gatD"
                     /locus_tag="VFX26_01080"
                     /EC_number="6.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Glu-tRNA(Gln) amidotransferase subunit GatD"
                     /protein_id="HEX5573098.1"
                     /translation="MTSDRNHNKMEEWFKKSNVRLGDSVVIETKNATHVGILIPRYEY
                     ADVNHLVLKLKNGYNIGINLEKIKSIKKIPEKLDPSYMSDTDHKYKDNLSDRDNVQDS
                     PDSPDPHLPHLSLLSTGGTISSKIDYRTGGVMAALSAKELNDSIPEIKKIANIDPEVV
                     LSEYSENIKPEHWTLIARKVADNILSGKYDGIIVSHGTDTMHYTSAALSFALQNLPVP
                     IVLVGAQRSSDRPSSDASLNLIGACTFAARSRFSGVFVAMHHSISDDVIACHIGTRVR
                     KNHTSRRDAFHSIDV"
     gene            complement(1230..1460)
                     /locus_tag="VFX26_01085"
     CDS             complement(1230..1460)
                     /locus_tag="VFX26_01085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HEX5573099.1"
                     /translation="MPKAFVLMNAELGSEDSIVSELKSIDGVKEIYQVYGVYDIVAQV
                     ESETMEKVKETITWKLRKLNGVKSTLTMIVME"
     gene            complement(1597..2904)
                     /gene="asnS"
                     /locus_tag="VFX26_01090"
     CDS             complement(1597..2904)
                     /gene="asnS"
                     /locus_tag="VFX26_01090"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004816 - asparagine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006421 - asparaginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HEX5573100.1"
                     /translation="MKYHRISEIKKGEFLGKEIRVRGWVYRVRKQKNKAFIIIRDDRG
                     GIIQCVLPSTSVPEITIESSLEIQGILFKDERAKDGGYEIRGNDVKIYSIADNDFPIG
                     EYQSTELLLDYRHLTVRTRKMISIAKIRATILEKVRNWFVDNDWLEVNVPTLVKSAVE
                     GGSTLFPVKYFKEEAFLSQSAQLYLEALIFSLGPVWTIGASFRAEKSRTLRHLAEYLH
                     LEAEAPWISLNDLFSIQEKLLVNLIGHVTKVRNEDLEFLKRDVATLNQIKEPFDKLSY
                     SQAIEILSSMDIQIQDGEVIRKIEWGDDLNIDSEKALTKDRTNPVFVHGYPLQVKPFY
                     VKEDPETPGISLTTDLLLPNGFGEVSSGGMREDNITSLKSRIEKEGLNMNSYSWYLDL
                     RKYGSVPHGGFGIGIERLVRWITNLEDIKECVLFPRTMARLNP"
     gene            3034..>3275
                     /locus_tag="VFX26_01095"
     CDS             3034..>3275
                     /locus_tag="VFX26_01095"
                     /inference="COORDINATES: protein motif:HMM:NF012575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske (2Fe-2S) protein"
                     /protein_id="HEX5573101.1"
                     /translation="MEYRVCNSEELPNNSMKVITIQGSNILVCRSNNNLFALDNSCPH
                     RGASLSKGEIKGTRIICYMHDFEYDLINGKLLHIPN"
BASE COUNT         1000 a          637 c          513 g         1125 t
ORIGIN      
        1 acacgtctat tgagtgaaat gcatctcgtc tacttgtgtg attttttcta accctggtac
       61 ctatatggca tgctatgaca tcatctgaga ttgaatgatg catggcaaca aagacgcccg
      121 agaatctaga tctagcagca aaggtgcaag cacctatcaa atttaatgat gcatcagatg
      181 aaggtctgtc tgatgatctc tgggccccaa ctaatacaat cggaactggt agattttgaa
      241 gtgcaaaact tagtgctgca gaagtgtagt gcatggtatc tgtaccatgt gatacgataa
      301 tcccatcata tttacctgat aatatattgt cagcaacctt tcttgctatg agtgtccaat
      361 gttcaggttt gatattttcg ctatattcac tcaaaacaac ttctggatca atattcgcta
      421 tcttcttaat ctcaggaatt gaatcattaa gttcttttgc tgagagcgct gccattaccc
      481 ctcctgtcct ataatcaatt ttactcgaaa tggtaccccc tgtacttaac aatgatagat
      541 gtggaagatg ggggtctgga gaatctggag aatcttgaac attatctctg tcagataaat
      601 tatccttgta tttatggtca gtatcagaca tgtaagaagg atccaatttt tcaggaatct
      661 tttttatgct cttgattttt tctaaattga taccaatgtt atacccattc tttaatttca
      721 aaactagatg attaacatcg gcgtattcgt accttggaat caagatacca acatgcgtgg
      781 cattcttggt ttcgataact accgaatcac ctaatcttac atttgatttc ttgaaccatt
      841 cttccatctt gttatgattt ctatcactgg tcaatatttg tactattttg tattaagtat
      901 atattaatga attgtgagtt taataatctc ctttttaatt aaattacttg agttttttgt
      961 tatttaatta actatttggt aacactattc atactagttt atcatcatca tcatcatgag
     1021 tgtcatatca atgataactc caacaatgat gtactatttt aggtaacatg tttcaaatcc
     1081 atatatcgta gatccgaaaa agtaagagtt ggtgcactac taaatgacat tacaattcta
     1141 cgatattatt ctagtgagcg agtaatgctg gagtagttgg aaaatggcaa ttaataagta
     1201 gaaatttgga taaaaaaatg gattgtttgt cattccatta caatcatagt tagggtagac
     1261 tttaccccat tcaattttcg taacttccat gtaattgtct ctttgacttt ctccatagtt
     1321 tctgattcaa cttgtgcaac aatatcataa actccataaa cttggtaaat ctccttcaca
     1381 ccatctatac tcttcagctc gcttacaatc gaatcttcgc tacctaattc agcattcatt
     1441 agaacaaatg cctttggcat aacaagaagg aagtgaatga gatataaaaa gatgatgcag
     1501 tgttgtgacg attattatat attgtcaaac taacagggtc tagaattagc aacttttttc
     1561 acaagaattc taacctatgg atccaataat agtatatcac ggattaagcc tggccattgt
     1621 tcttggaaag agtacacatt ctttaatgtc ctccagatta gttatccatc ttactagcct
     1681 ctcaatacct atgccaaagc ctccatgagg tacggatcca tattttctta ggtccaagta
     1741 ccacgaatac gaattcatgt ttaatccttc tttttcaatc ctagatttca atgaggttat
     1801 attgtcttct ctcataccac cactgctaac ttcaccaaat ccatttggca aaagcaaatc
     1861 cgtggtaaga gaaattcccg gtgtttctgg gtcctccttt acgtagaacg gtttaacctg
     1921 gagtggatat ccatgtacaa aaacgggatt agtacgatcc tttgtaagtg ctttttcaga
     1981 atctatattc aaatcatctc cccactctat ttttctgatc acttcaccat cttgaatctg
     2041 gatatccatt gaagaaagaa tctctattgc ttggctgtag ctcaatttgt caaatggttc
     2101 cttgatttga ttcaaagttg ccacatctct tttcagaaat tctagatctt cattcctcac
     2161 ttttgtcaca tgtcctatca aattgacaag taatttttct tgtatcgaaa aaagatcatt
     2221 gagagatatc catggagctt ctgcctccag gtgcaaatat tcggcaagat gtctgagagt
     2281 ccttgatttt tcagccctaa acgaggcgcc tatcgtccaa accggtccta atgaaaaaat
     2341 cagggcctct aaatatagct gtgcactttg ggataggaat gcttcctctt taaagtattt
     2401 tacaggaaaa agggttgaac caccttccac tgcactcttg actaaagtag gaacattaac
     2461 ttctagccaa tcattatcga caaaccaatt acgtactttt tcaaggattg ttgctcttat
     2521 ttttgcaatt gaaatcatct ttcttgtacg cacagtcaga tgtctataat caagtaatag
     2581 ttcagtactc tgatattctc caattggaaa atcattatct gctatactgt atatcttaac
     2641 atcattgcct ctaatctcat atccaccatc ctttgctctt tcatctttga ataagatccc
     2701 ttgaatttct aacgaggatt ctatcgtaat ctctgggaca ctcgtactag gcagaacaca
     2761 ttgaattatt cccccacgat catctctaat tatgatgaat gctttattct tttgtttacg
     2821 cactctgtaa acccatcccc taactctaat ttctttacct agaaattcgc ctttcttgat
     2881 ttcgctaatt ctatggtatt tcaattctgt atttacgaca ctaacgatct ttataatgat
     2941 attgtacatt tttttaagaa aacaaaaaaa tccagcttat catagaatat taaaaatgaa
     3001 tttatagaat ggagagggtc atactattca acaatggaat atagagtatg caatagtgaa
     3061 gaacttccaa ataattcaat gaaggtaata acaattcaag gttcaaatat ccttgtgtgt
     3121 agatccaata acaacttatt tgctctcgat aattcctgtc ctcatagagg agcatctctt
     3181 tctaagggcg aaataaaagg aacaaggata atatgctata tgcatgattt tgaatatgac
     3241 ctaattaatg gaaaattgtt acacattccg aataa
//
LOCUS       DASUMD010000044         3144 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_121181, whole genome shotgun sequence.
ACCESSION   DASUMD010000044 DASUMD010000000
VERSION     DASUMD010000044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3144)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3144)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3144
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_121181"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..997
                     /gene="mtnA"
                     /locus_tag="VFX26_01100"
     CDS             <1..997
                     /gene="mtnA"
                     /locus_tag="VFX26_01100"
                     /EC_number="5.3.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046523 -
                     S-methyl-5-thioribose-1-phosphate isomerase activity
                     [Evidence IEA];
                     GO_process: GO:0019509 - L-methionine salvage from
                     methylthioadenosine [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="S-methyl-5-thioribose-1-phosphate isomerase"
                     /protein_id="HEX5573102.1"
                     /translation="IMIDQTKLPGKLVYVRYKKYEDVARAIERLVVRGAPAIGVAAAF
                     GMSLAANSSKAKTKKALLKDLKIAYNRLRSTRPTAVNLVWALDQIMKEAYSKNELEDI
                     KESIVHSSLNMATDDITTNKQLGKNGAEIIHNDDVILTHCNAGSLATVTYGTALGVLR
                     AASDMGKNIQVIATETRPVMQGSRLTAFELDHYGIDFSLIPDTAVGHLMSSGLINRVI
                     VGADRILKTGHVYNKIGTYQVAALAKRHNIPFYVAAPSSTFDLTSEVNEVVIEERNKN
                     ELMKMGNKLLAPKGIKVFNPAFDVTPPELITGIITEKGIIKPPYQKTIVKIVRHG"
     gene            1032..1634
                     /locus_tag="VFX26_01105"
     CDS             1032..1634
                     /locus_tag="VFX26_01105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PqqD family peptide modification chaperone"
                     /protein_id="HEX5573103.1"
                     /translation="MPKSISQEQVYSILRKCMDPEIPVNIVDLGLIYGVNINESNDVD
                     IEMTMTTRGCPLHDTLVSDVKRYIGKIDGVGNINVSIVWDPPWNMERIEPSVREKLGF
                     GRPKLRFQVDYEKYQPMVKGRLVTQEDGSLILENEKEQRFMVNQAIVDFWNSCDGTKT
                     ITQLADHFSSKLGLPRQQVEQEVVQLVQQLLESELLRPQQ"
     gene            1646..2239
                     /locus_tag="VFX26_01110"
     CDS             1646..2239
                     /locus_tag="VFX26_01110"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014447.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX5573104.1"
                     /translation="MCSQDSIVSTTSKFHKVVVELGIGDGQLLEKVVRNQKSTNTCYL
                     GIEIDAKQIQVARDKLRENNVYLINESFEKVLSCFPDNYADEFIFVLPPPNYIDRAKE
                     ILWIPFYQDIYKKLKEKGTLTIVTEITNNLLEPVTDNEFRTWKNWLICRFVNLGFMIK
                     ESFDDSPVYYSSHYLEQFRADRSRIKIITLILIKPSF"
     gene            complement(2265..2672)
                     /locus_tag="VFX26_01115"
     CDS             complement(2265..2672)
                     /locus_tag="VFX26_01115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573105.1"
                     /translation="MKNHEQREREIVSGVDEKNAIPYEKWIVSFSDSRKSNMKIYYRE
                     FFAQGFYEAYDMVINYAEKQSVEIRWFKEKRNCGNTFPKYDIMKLESFCTYCNKRFNH
                     QDPVQCDHDDCSSIFCSKNCMNDHVMLLHINRT"
BASE COUNT         1092 a          501 c          581 g          970 t
ORIGIN      
        1 cataatgatt gatcaaacaa aattgcctgg taaactagta tatgtcagat acaagaaata
       61 tgaggacgtt gctagagcta tagaacggtt agttgttaga ggagctccag ccataggtgt
      121 tgcagcggca tttggaatgt cgttagctgc aaattcgagt aaagcaaaaa ctaaaaaagc
      181 tcttctcaaa gatcttaaaa ttgcctacaa taggttaaga tcaacgagac cgactgccgt
      241 taacttggta tgggccctgg atcaaataat gaaggaagca tattcaaaaa atgagcttga
      301 agatatcaaa gagtcgattg ttcattcctc tctaaacatg gcaacagacg atattacaac
      361 taataagcaa ttgggcaaga atggtgcaga gattatccat aacgatgatg taatactcac
      421 acattgtaat gcgggttcac tcgcaacggt tacatatggt accgcattag gtgtgcttag
      481 agcagccagc gatatgggta aaaacataca ggttattgct accgaaacta gacccgtaat
      541 gcaaggttct cgattaactg catttgaatt agatcattat ggcatagatt ttagtttgat
      601 ccccgatact gctgtaggac atttgatgtc tagtggtcta attaacagag taatagtagg
      661 tgcagatcga attttgaaaa ctggccatgt atacaacaaa attggcacct atcaggttgc
      721 tgcacttgca aaaaggcata acattccttt ttatgtggcc gcccctagtt cgacgtttga
      781 tttaacaagt gaggtcaatg aagtagtcat tgaagaaaga aacaaaaatg aattgatgaa
      841 aatgggtaat aagttactag caccaaaggg aatcaaagtt tttaatcccg cttttgatgt
      901 aacaccacca gaattgatca caggaattat taccgaaaaa ggcattatta aaccaccata
      961 tcaaaaaact atagtcaaaa ttgtaagaca tggataaagt atttaatctc taagtatatt
     1021 tttattattg gatgccaaaa agtattagtc aagaacaagt gtattccata ttaaggaaat
     1081 gtatggatcc tgagattccc gttaatatag tcgatttggg tttaatttat ggagtaaaca
     1141 taaatgaatc aaatgatgtc gatattgaaa tgacaatgac aacaaggggc tgtcctcttc
     1201 atgacacgtt agttagtgat gttaagcgat atataggaaa aattgatgga gtagggaaca
     1261 ttaatgtctc tattgtttgg gatccgccat ggaatatgga aagaatagaa ccgtcagtca
     1321 gagaaaaact aggatttgga aggccaaagt taaggtttca agttgattat gaaaaatacc
     1381 aacccatggt gaagggcaga ttggttacac aagaggacgg ttccctaatt cttgaaaacg
     1441 agaaagagca gagatttatg gtgaatcagg caatcgttga tttttggaat agttgcgatg
     1501 gaacaaaaac aattactcaa ttagcagatc atttttcatc caaattggga ttgcctagac
     1561 aacaggtcga acaagaagta gttcaacttg tccagcaact acttgaatct gaattgttaa
     1621 gacctcaaca ataaagaaac acatattgtg ttcccaagat agtatcgttt caacaacctc
     1681 taagtttcat aaagtagtag tggaattggg aataggagat ggtcaattac tagaaaaggt
     1741 tgtgaggaat caaaaaagta ctaacacatg ctatttaggt attgagattg atgcaaaaca
     1801 aattcaagta gcacgtgata aattgcgaga aaataatgtt tacctgatta atgaatcttt
     1861 tgaaaaagtc ctttcatgtt ttcctgataa ttatgctgac gaattcattt ttgtcctacc
     1921 tcccccaaac tatattgaca gggctaaaga gattctatgg atcccattct atcaagatat
     1981 ctacaaaaaa ttgaaagaaa aaggaactct tacaattgta acagaaataa cgaataattt
     2041 gcttgagcct gtaactgaca atgaatttag aacatggaag aattggttaa tttgcaggtt
     2101 cgttaatctt ggttttatga taaaggaatc ttttgatgat agtcctgtat attacagctc
     2161 ccactattta gaacaattta gagcggaccg atcaaggata aagataatta ctctaatttt
     2221 aataaaacct tcattctaaa tcaacttagc ataacaactg ctttttacgt cctattaata
     2281 tgtagtaaca taacatgatc gttcatacaa ttttttgaac aaaatattga gctgcaatca
     2341 tcgtggtcac attgaacagg atcttgatga ttaaaccttt tattgcaata agtgcaaaag
     2401 gattctagtt tcataatgtc atatttggga aatgtatttc cacaatttcg tttctcttta
     2461 aaccatctta tttctacact ttgtttctca gcataattga ttaccatatc ataagcctca
     2521 tagaaacctt gggcaaaaaa ttctcgataa taaatcttca tattgctttt tctggaatct
     2581 gagaaagaga cgatccattt ttcgtaaggt atggcatttt tttcatctac acctgaaact
     2641 atttcccttt ctctttgctc atggtttttc aactacttga attatattct aacattcaaa
     2701 tatattttta ctctaaccaa aatatttagt aatgttggaa catgtggatt agaaatggta
     2761 gtcgtttatc atcattgaga agtttataag aacccagatt taataattta agattggaaa
     2821 agacatgcgc atattgcggg aagttttttc atggagaaag ctggcctcat gtagagggaa
     2881 attctaatct aggtgtattg aaaatagaga atttttgctg tgaagaacat agaaatttat
     2941 ttttggaatc gacttgaagt ataattgatt taatttccaa acacctgacc aagattattg
     3001 cgcatactcc ccaaaaatcc ctttctactc tctttctttt taacgtgttg aaaacacttg
     3061 tcacataaag atctcaaatt tgaaggtctg ttgtctttca aggaaccatt aatatgttca
     3121 aaaaagggac cattacttcc ttta
//
LOCUS       DASUMD010000045         5558 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1116519, whole genome shotgun sequence.
ACCESSION   DASUMD010000045 DASUMD010000000
VERSION     DASUMD010000045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5558)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5558)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5558
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1116519"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            236..472
                     /locus_tag="VFX26_01120"
     CDS             236..472
                     /locus_tag="VFX26_01120"
                     /inference="COORDINATES: protein motif:HMM:NF018096.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1059 domain-containing protein"
                     /protein_id="HEX5573106.1"
                     /translation="MKISPLARTHLCIGFGLLVMKTLSCREAGFDCDYVVKGETEEEI
                     FKNGAQHAMKDHGMKEEDITPEFKEKLRGLIKTG"
     gene            1075..1977
                     /locus_tag="VFX26_01125"
     CDS             1075..1977
                     /locus_tag="VFX26_01125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573107.1"
                     /translation="MFEKKKSILEEIDGNQYLFDSKVCISMFRRLANLYGNEFKNFIG
                     NEQYVSDVFWDKAIPKEQEFDEIKNEIGTTNETFKIIKDPVQVQELAFHLGKLSKNEI
                     LILFSTANAFHRQERMGALVKLQEIRENNDKIKIRILTPFDKDIHSISKKLKNELNVE
                     MMNLREQSRIRASVLLVDRKFALYVELKDDTKYTSYEAIGLSIFSSIRSTVISYVTIF
                     ETMWKQEQVYQELSELQKQVKSQEVINIELNNTIADLKHSIKPIVALSNVMRSKKFDS
                     EDQVEFVDIITKNARKLEKIVDDV"
     gene            2348..3742
                     /locus_tag="VFX26_01130"
     CDS             2348..3742
                     /locus_tag="VFX26_01130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573108.1"
                     /translation="MTSIVTTSIINKKTYLMTFIVWAIIITDVIIGTFLDVLGKPLNS
                     SFGVILFITMSITVFFAGLYVLRNYMAALRTDLEAPSFINRLYKATPIFLYALLVIFG
                     AIIVQMVLFSQYSTYLLILIVLISGVSVLFLGFRTYKFLSWYKSSANRRHNIMILAFA
                     VSSMLLCISMTETTVINTKVLVVSRPPSIDPDFESSNTMASRHLSSIENIIHLYVFLV
                     PQVTAIAIAETVAVAYFLRYFKDQIGRAIFWTIIILPPVLFLTGIFAPQIISSTAGQF
                     VYMDPRFLIFRVMGTTGWVLADLVIAYAFILVAKTLGRQITPSRDKIMSYLVIAAFST
                     ILISPATNNWITNNSYPPFGAIQRSFLVLASFMFSVGIYSVALSVAQDAELRHLARKY
                     AKEYALLGALGKAEEKAETMRNLVKVIRQHADAMEKDTAVEISMSDDSEVRHYLDFVI
                     RQTRGKKDDGTVGA"
     gene            3837..4709
                     /locus_tag="VFX26_01135"
     CDS             3837..4709
                     /locus_tag="VFX26_01135"
                     /inference="COORDINATES: protein motif:HMM:NF023568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX5573109.1"
                     /translation="MQENKVTVNDFEIRYLKSEKRNTSKKKNVLFIHGLGSSSDRWLD
                     IPDALSRYYYPIVAVDLIGFGGSDKPVTVDYTIEYFSKFIRDFIDCKQIWRNGDDSDD
                     DSDDDSDDDSRKTIIVGHSLGGYIAAKVAIEDQDLIEKLVLIDSSGMLKKPTPLLEQY
                     LNAALNPSFENVKNVFELMLGNPALLNLGIVDAFIKRINLVGAKHAFKSAFENSTKKY
                     IELSELQRIENIPALIICGAADKLIPVSHSKQFNKVLKRSQLEIVENTGHAPFTEKPS
                     MIFDIMRIFLTNNK"
     gene            complement(5173..>5558)
                     /locus_tag="VFX26_01140"
     CDS             complement(5173..>5558)
                     /locus_tag="VFX26_01140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573110.1"
                     /translation="ITIEFNPNRHNLSSFSVGAVPFRISVAQDAEPGKYIIPIQGNVS
                     MESSTLGVPSVNASILGKSFFTIRPNLTVTVVNPPSFEDDFKEFWSSYGQVISLFGAG
                     FLGAFSSHLIDIVRERKKEKKQMRT"
BASE COUNT         1853 a          903 c         1019 g         1783 t
ORIGIN      
        1 cattatagta acgataatca cataatataa tataatataa tataacataa taatatttac
       61 aagaattcta ttgaaaacat gtaaatttta aatcgggttc ggtgggatga gggacagatt
      121 tgacactata tagccaccct catttacggg agcgcattct aaaacgctag taatagtaaa
      181 aattacgtgg gaatcttgtg aaattttaca ctggtctaat tatccacggt accacttgaa
      241 aatttccccg ctagcaagaa cacatttatg cattggattt ggactactag ttatgaaaac
      301 attatcatgt agagaagcgg gatttgattg cgactatgtc gtaaaaggag aaactgaaga
      361 agagatattc aaaaatggag cacaacatgc tatgaaagat catggaatga aagaggaaga
      421 cataactcca gaattcaagg aaaaacttag aggattaatt aagacaggat aaattacgtt
      481 tcatttattt ttacaattca atcatttttc atactttggt tattaccgta taatggaaag
      541 gctataatca taatcgggtt cggtgggcag catgtggaat tccacattag tcttgtcgag
      601 gatgaccatt tgagtaccat atttatgacg ttctttcgat ataaaattat gagagtatta
      661 atacaggaaa cactcattat gatataacta cttatcagca aatttgtttg gtatactaca
      721 tggttttaaa ggtagttagt tgaattcgga atctggcact attagatagt taaaacatag
      781 atgttccaaa tatcagtttc aattggaatg gtagctatat ccaattcaaa atacttagct
      841 cgctgtgtaa tttatttccc tctattatag aattagtttg aaaattgtta gaataattcc
      901 acgaatttca aatttcgtat aaaatgacat gcattgcatc gtttgatatt ttagttgatc
      961 aaacctttta agtggcctgc tagaacgagt aatatatagt tgcatgaaaa taccagtagg
     1021 aatctgaata aagaaaattt tgataataaa tttacttgtg cgttatgcgg caaaatgttc
     1081 gaaaaaaaga aatcaatatt ggaagaaata gatggaaatc aatacctttt tgattccaag
     1141 gtttgtatta gcatgtttag aagattagca aatctatatg gaaatgaatt taagaacttc
     1201 attggtaatg aacaatatgt ttctgatgtt ttttgggata aagctatacc aaaagagcaa
     1261 gagtttgatg aaataaaaaa tgaaatagga accacaaatg aaacctttaa aattattaaa
     1321 gatccggtcc aagtacaaga acttgccttc catctaggaa agttatcaaa aaatgaaatt
     1381 ttaatattgt tttccacagc caatgctttc catagacaag aacgtatggg tgcattagtt
     1441 aaactacaag agataagaga aaataatgat aagataaaaa taagaattct cactccattt
     1501 gataaggata tacattcaat ttcaaaaaaa ttaaaaaatg aattgaatgt agaaatgatg
     1561 aaccttagag aacaatcaag aattagggct tcagttctac tagtcgatag gaaatttgca
     1621 ttatatgtcg aattaaagga tgatacaaaa tatacttcgt atgaggcaat aggattatca
     1681 atattttctt ctatcagatc aactgttatt tcttatgtta ctatatttga aaccatgtgg
     1741 aaacaggaac aagtttatca agaattgtct gaactccaga aacaagtaaa atcacaggaa
     1801 gtaatcaata ttgaattaaa caatacaata gcggatctga aacattctat taaaccaata
     1861 gttgctttgt caaatgttat gcgttctaag aaatttgatt ccgaagacca agttgaattt
     1921 gttgacataa ttactaaaaa tgccagaaaa ttggaaaaga tagtagacga tgtataaaca
     1981 gactagaact cggataattc gtccgaaact aaatatattc agatcgtttt tagttagttt
     2041 acttttaggc agtttaagtc ttttctcata tcatgcgggt tgcctgaaac ttgagaaatt
     2101 tgtctagaag attacttcga tttcatttat agcaaagaaa tttgggttcc gtggttctag
     2161 taacgctagt agtttaataa atagacttgc ttaattgtaa atgtgtatgc caagcttaac
     2221 ctttatggca gtgaagtttt aaaatgtatt agaaccttta tccattactt attgttggaa
     2281 tactgattgg tcaatcacta aagcttttct actctgtaaa agaagtagta atctgtcgac
     2341 cacaaaaatg acttcaatag ttactacaag tattattaac aagaaaactt atttgatgac
     2401 gttcatagtt tgggccataa taataaccga tgtaatcatt ggcaccttcc ttgacgtttt
     2461 gggaaagcct cttaattctt cttttggtgt aatattattt ataacaatga gtatcactgt
     2521 attttttgca ggtctgtatg tccttagaaa ttatatggct gcattgcgca cggaccttga
     2581 ggctccttcg tttattaata ggctctacaa ggcaacacct atttttcttt atgcactttt
     2641 agtcatcttt ggagctatca tcgtccagat ggtgttattt tcacaatata gcacttacct
     2701 gctgattcta attgtcttaa ttagcggagt atccgtcttg ttccttggat ttcgcactta
     2761 caaattcttg tcatggtaca agtcgagtgc gaacagacga cacaatatca tgatattggc
     2821 atttgctgta tcatcgatgc tcctttgcat cagcatgaca gaaactactg taattaatac
     2881 aaaggtatta gtcgtttcaa gaccaccctc catagatcca gatttcgagt ctagcaatac
     2941 tatggcaagc agacacttat ctagtataga aaatatcatt catctctatg tgtttcttgt
     3001 tcctcaagtt actgctattg ctatcgcaga aacagttgct gtcgcgtatt tccttcgtta
     3061 ttttaaggat cagataggaa gagcaatatt ttggacaatt ataattttac cacctgtgct
     3121 ttttttaact gggatatttg ctcctcaaat aataagctca acggcaggtc aatttgtgta
     3181 tatggacccc cggttcctta tctttagggt aatgggtacc acaggatggg ttttagctga
     3241 tcttgtaata gcctatgcat ttattttagt agcaaaaact cttggacggc aaattacccc
     3301 ttctcgtgat aagatcatga gctatttagt tatagcagca ttctcaacca ttttaatttc
     3361 tccagcgacc aataactgga taaccaacaa ttcttatcca ccatttggag caatccaacg
     3421 ttcctttctt gtgcttgctt cttttatgtt tagcgtagga atatactctg tcgcactgtc
     3481 agtggcccaa gatgcagaat tgcgtcattt agccaggaaa tatgcaaagg agtatgctct
     3541 gctaggtgct ttaggtaaag cagaagagaa ggcagagact atgcgaaatc ttgtaaaagt
     3601 aatccgccaa cacgcagatg ctatggaaaa agatacagca gtagaaattt caatgtcaga
     3661 tgatagcgaa gttagacact atttagactt tgtaattagg cagactagag gaaaaaagga
     3721 tgacggaaca gtcggcgcct agatttaagc tttctttcgc cttaactttc tcgttgtgcc
     3781 ctatcatcac atattttata gtagcaagag acttgacgta ccattaggtg gaagaagtgc
     3841 aggagaataa agtaacggta aatgatttcg agataaggta tctgaaatct gaaaaacgca
     3901 atacttcgaa aaagaaaaat gttttattta tccatggtct cggatcatca tcggatagat
     3961 ggttggatat ccctgatgcc ttatccagat attactatcc aatagtagcg gttgacctca
     4021 taggctttgg cggtagtgat aaaccggtaa cagtagacta cactatagag tattttagca
     4081 aattcattag agacttcatt gattgtaagc aaatttggag aaatggtgat gatagcgatg
     4141 atgatagcga tgatgatagc gatgatgata gtcgcaaaac aataatagta ggtcattcac
     4201 ttggaggata tatagctgca aaagtagcca tagaagatca agatcttata gaaaaacttg
     4261 ttctcataga ctcttctgga atgcttaaga agccaacacc cctacttgaa caatacctta
     4321 atgctgcatt aaatccatcg tttgaaaatg ttaaaaatgt tttcgaactg atgcttggaa
     4381 atccagcgtt actcaatctt gggatcgttg acgcctttat taaaagaatt aacttggtgg
     4441 gagccaaaca tgcatttaag tcggctttcg aaaatagtac gaaaaagtat attgaattat
     4501 cagaattaca aagaattgag aatatcccgg ctctgatcat atgtggtgct gctgataaat
     4561 taataccagt ttcacattct aaacagttta ataaggtact caaacgtagc caacttgaaa
     4621 tcgtagaaaa tacaggtcac gcaccgttta ctgagaaacc atcaatgata tttgatataa
     4681 tgcgcatatt tttaactaat aacaaataat ggtgattaca cttggatctt ttctaggtat
     4741 caggaagata agtgcgcatt tggctttact caaatcgatc ggaaattatc attttctttt
     4801 aaacatctaa ctaggctatg gcgcactcat gtattagttg cttttattat gttactgact
     4861 atagtattaa taaatcgggt tcggtggaac tgataatgct agcactctaa ttttggaatc
     4921 cgatacttac tatttgtttt caactgcccc tggagaaggt gctgtatttg cgggaaatac
     4981 tttcaaggag attatatgcc cgtcattcta tccatagtat attagtccac cataacctag
     5041 ccacatttca aagcctggta tcattggatt aaagtagtcg gaggctgcta gtaatttgcc
     5101 tgtagctcag aagggtttta agatgtttaa aatgtgaatc gtcataatag ggcattaatg
     5161 ctattcagac gctcatgttc gcatttgctt cttttctttt ttcctttccc ttacaatatc
     5221 gattaagtgt gatgagaaag caccaagaaa tccagctcca aacagagaaa tcacttgacc
     5281 gtaactactc caaaactctt taaaatcgtc ttcaaatgaa ggtggattga ctacagttac
     5341 tgtcagattt ggtctaattg taaaaaaact ttttcctaaa attgaggcat taacgcttgg
     5401 aacccctaat gtactagatt ccattgaaac gttaccttga attgggatga tatatttccc
     5461 aggttccgca tcttgtgcga ctgatattct gaatggtaca gcgcctacag aaaaagacga
     5521 tagattatgt ctgttagggt tgaattctat cgtgatcc
//
LOCUS       DASUMD010000046        11144 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_232861, whole genome shotgun sequence.
ACCESSION   DASUMD010000046 DASUMD010000000
VERSION     DASUMD010000046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 11144)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11144)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11144
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_232861"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..221)
                     /locus_tag="VFX26_01145"
     CDS             complement(<1..221)
                     /locus_tag="VFX26_01145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573111.1"
                     /translation="MKGVSKSTILVPGASAPAAINTIKSLKMVKYPVRIVSSDTNPVS
                     AGFYMSDAHELLPEIESKLYLTRLFEIIT"
     gene            349..972
                     /locus_tag="VFX26_01150"
     CDS             349..972
                     /locus_tag="VFX26_01150"
                     /inference="COORDINATES: protein motif:HMM:NF014826.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PHP domain-containing protein"
                     /protein_id="HEX5573112.1"
                     /translation="MLDLKKDYHVHSNYNDHSPQELSIEKVTRYAEKIDLNTLAFTEH
                     VRKTSDWIPRYLEEIDRIVSSGTKMTIISGFEAKILKDGTVDFPTEYEGHFLIASFHT
                     RYYNKEDWLSALKSAIALPYVNVIGHLAPEESFDLTDDELVELSELLKLNYKTVEINA
                     KYRRPPMEWLRIFKNNNVNFHLGSDAHNLTEVGNFNSIRNLIEYVNY"
     gene            1239..2480
                     /gene="larC"
                     /locus_tag="VFX26_01155"
     CDS             1239..2480
                     /gene="larC"
                     /locus_tag="VFX26_01155"
                     /EC_number="4.99.1.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel pincer cofactor biosynthesis protein
                     LarC"
                     /protein_id="HEX5573113.1"
                     /translation="MAKIVIIDSQIAGISGDMLLSSLIDVGANKKKVIDSIYACQNYF
                     KGSKIRNADFLKTSSYGISCTKFLFDYTDSANSRKGSEVYRAIAACSDSLNLSNIAKS
                     FVLNSLKKVIQAESKIHGSSYTSVRLHEVSTIDTAADLIGTAVALDNLDLLSKKFYTT
                     DVAVGNGLLEFSHGVVPNPGNAILEILSDRQILLVPGKLDGELTTPTGAAMLVNLASE
                     HISQYPPITPEKIGNGGGQKQGKNVANILRLVIGNSNLKLDYTSESVFELETNVDDVT
                     GEIIGNMIDVLYANNAKDVTVLHGISKKNRPSFVVKVLADKASSDALIQILLSETGSL
                     GCRVSEVNRITTSRSFITLPISIENRKFEVKVKISKNGDGSIKSIKPEYDDIKNISTV
                     LKIPYKKVFDTVYHELIVKYK"
     gene            2483..3352
                     /gene="larE"
                     /locus_tag="VFX26_01160"
     CDS             2483..3352
                     /gene="larE"
                     /locus_tag="VFX26_01160"
                     /inference="COORDINATES: protein motif:HMM:TIGR00268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent sacrificial sulfur transferase
                     LarE"
                     /protein_id="HEX5573114.1"
                     /translation="MNLEDKFFQQLVSWFHGKNQKTIIALSGGVDSAVVAMAAKKALD
                     KNAIAVTADYNTLSADELKSAKKIAKEINIEHKVIKYNELDNIEFVKNDSLRCYHCRT
                     ELSTYLLKEARQMNVHLIVDGTNTDDLTDYRPGIKALRENGILSPLVELGINKQNVRN
                     IAKSNNLSVYDKPSNSCLASRIPHGMPITFEKLKRIETAESLVKSIFKVKQVRVRDHQ
                     DIARIEVGREEIKDMLDTVKFSEIDSKLKDLGFKHIALDLSGYKSRENINTHSSNKTN
                     LDLEQVGTNSNSI"
     gene            3353..3883
                     /locus_tag="VFX26_01165"
     CDS             3353..3883
                     /locus_tag="VFX26_01165"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEX5573115.1"
                     /translation="MIDFDRKINIEQITKKDMAKLKEGDVAPDFELPDIDMNVHKLKE
                     FRGKNTLLAFFPAAESPVCTTEMCVFRDSLSEFENNNTAVLGISVDGPFANKIFKVNR
                     HLNFPLLSDYKKETISDYGIVMKDLGPLKDYNAAKRSVFLLDKEGVIKYIWISDNPLI
                     EPNYDEIRSKLKEINN"
     gene            complement(3935..4447)
                     /locus_tag="VFX26_01170"
     CDS             complement(3935..4447)
                     /locus_tag="VFX26_01170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein subunit"
                     /protein_id="HEX5573116.1"
                     /translation="MEFKIDNSDNILSGSIKESSGNGKMVATINGKEHSIKIVGLKNS
                     ILEFILDNSYRTAKILEFGSSHIKLLMNGEQIVLKKHSKLTEILEKSMALGGSSSGEN
                     KLLSQIPGRVVSIMVNAGDQIKKGDSIIVLESMKMQVAVKAHKDGQIRDTKVKIGDTV
                     SRNDVVAVIE"
     gene            complement(4437..5960)
                     /locus_tag="VFX26_01175"
     CDS             complement(4437..5960)
                     /locus_tag="VFX26_01175"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HEX5573117.1"
                     /translation="MGKLISSILIANRGEIALRVIRACKEMKIKSIALYSDEDLRSKH
                     VKSADEAYYLGPPPPTKSYLNIDKIIEIAESAGAEAIHPGYGFLSENETFAAKCEERG
                     IIFIGPTSEAMALTGDKMKCKEIMKKAEVPTIPGSDDILEEVDKAVEIAQEAGYPVLL
                     KSAYGGGGRGIRFADDEKKLREEFEMAAAESRAAFGKSGLYVEKFLQGIRHIEFQLAR
                     DSSGNGRHLFERECSIQRRHQKLIEFSPSSVVDKKTRAKIGEIAVRAAESVDYLNAGT
                     AEFLRDEKGNFYFIEVNSRLQVEHPVTELVTGIDLVKLQIRIACGEEIPFEQSDLNLN
                     GSAIECRINAEDPFHDFVPSVGLVPDCNLPYGPGVRVDTYLYPGCSVSGYYDSLVAKL
                     ITWGQDFNEARVRMSNALDEFLIEGINTTIPLYRTIMDEKNFINGNISTDYLEKYNML
                     NVMQGELKEKHLKESDTAIAAALLFSEYLKGQYSAGNSSKELALSNWVRTGNIKNGI"
     gene            complement(5973..7514)
                     /locus_tag="VFX26_01180"
     CDS             complement(5973..7514)
                     /locus_tag="VFX26_01180"
                     /EC_number="6.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016874 - ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA carboxylase subunit beta"
                     /protein_id="HEX5573118.1"
                     /translation="MHDEKINRLHEMKKKAEIGGGQERIDAQHTKGKLTARERLDLLL
                     DSNSFIEIDKYVVHRSTDADSTKYYGDGVITGFGTINGRQVFVYAYDFTILGGSLGEM
                     AGKKIVKLMDHAIKVGAPLIGILDSGGARIQEGVMSLDGYGDIFFRNTMASGVIPQIT
                     ASIGPCAGGAVYSPAMTDFVIMVENIGQMFVTGPEVVKEVLSQEVSFEDLGGARTHST
                     KSGVAHFVAENEYECMDKIKRLISFIPQNNLEVSPVTESQDDSNRLEPEFSKILPENP
                     YEQYDMKQIIKLLVDKGDFLEVHEHFAENILVGFARIDGKAIGFIANQPMYLAGALDI
                     NSSTKAARFIRFCDCFNIPIVTLVDTPGYMPGTDQEHNGIIRHGSKLLYAYCEATVPK
                     VTCIIGKAYGGAYIAMGSKNLRADINYAWPTAEIAVLGPEAAITIVHRKDLRNSKNPV
                     EIKKKLAKEYRQKFANPYIAAEKGIIDLVIDPIETRIMIVKALNVLQNKRESRPVRKH
                     GNINL"
     gene            complement(7632..7844)
                     /locus_tag="VFX26_01185"
     CDS             complement(7632..7844)
                     /locus_tag="VFX26_01185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573119.1"
                     /translation="MSSEYEQNVGKLLAEKIEKYELMKNDSSVSKTQLESLLSEIESL
                     ESLYDNYNLGMNYFRRARGGRAGLRE"
     gene            complement(7997..9211)
                     /locus_tag="VFX26_01190"
     CDS             complement(7997..9211)
                     /locus_tag="VFX26_01190"
                     /inference="COORDINATES: protein motif:HMM:NF012234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX5573120.1"
                     /translation="MIRPKISEFVGNENSRKKVVEWIVKWSDGSKPLLLVGPPGVGKT
                     SFVHAICHEFDIDLVELNASDSRNKNLLAQVISPIFSNASLTGKNFLLFLDEIDGISN
                     REDSGGLDFLLDLFKEPSIRVVMAANKSNEAIKKISKVSKTITFSPIPPRLSMLYLDR
                     ILRLQNSLMKPEDRIAVVRNCLGDIRSLLNAAQVMKAGYTTTKNPGVDIDIENTINQF
                     FSSTTFGEALDVVQRADISYSDPRFGQSSEDRRKDILAAFFSTIVMSKIDITTIALLL
                     DRLSELDVILSRSLVMRNWKILRYFPLILTKSLFYESRNKYIRYNRYSIGFEHMGIFS
                     RAQGLKKTIRILAKFFHTSRSTFGSVYFEPLKHILTRTTEYENLIRSTITSEKEADAM
                     VREISRTEEIAR"
     gene            complement(9247..10383)
                     /locus_tag="VFX26_01195"
     CDS             complement(9247..10383)
                     /locus_tag="VFX26_01195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573121.1"
                     /translation="MSAKENKIFSKVSLLRTTSGKKIIKNVLLQEQGYKQYSKYKAQS
                     ETEFTEFTKRFLLSLHQKLISDPNPKATMKKFVDEIEANDLSLDDSKIDSVRERLSKP
                     DVLADRVQRILNSNFVKMTFPVLTALFDSASDFYKETISKEVRNAIIDGHVIAIDLSE
                     PMDRIMDADEDIEFLDDYKLMNPYILEIARQKISIGGDAVLKAFEDGFKDARIGQYID
                     ARLKLKPESISDENMIGCYKKYRAVMGTAGRNMALNLPPLNDIFHLGMAKAAECVGCG
                     NEMEDAIVNGGIKIPSWPLYYSIVTKNVEKAFELTLDKSEIYLDEAKIALKMLPEELT
                     IKPFLKFLFLTVSHYNQYWFNEMKRRDLFPYFQKNLSISIKNSK"
     gene            complement(10496..11098)
                     /locus_tag="VFX26_01200"
     CDS             complement(10496..11098)
                     /locus_tag="VFX26_01200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HEX5573122.1"
                     /translation="MVTKESVMLLFNKWKTDDIEIQDSGLKNVIALDPAIIPISFGRH
                     EHQRLKKAEVHIIERLVNKLMHFGKKYAKNTGRMGGKKGRMIKTVKTALDLIYHETGN
                     NPVELLIRAIENAAPNEDTTRIVYGGVVYHVSVDVAPLRRIDLALRFIAEGVRESTYS
                     NPRTIEEALAKEIISASKNSMESHSVKKKNEQERIAMSSR"
BASE COUNT         3421 a         2127 c         1907 g         3689 t
ORIGIN      
        1 tttgtgatta tttcaaatag ccgagttaaa tataatttgc tttctatttc tggtaacagt
       61 tcatgagcgt cagacatata aaatcccgct gaaacagggt ttgtatcgga actgacgatc
      121 cttactggat attttaccat tttcagagat tttatggtat taattgcagc cggtgcagac
      181 gcacccggaa ctaaaatagt ggattttgag actcctttca agcagtattc cttatccgaa
      241 ttaaaatttt gtttagtatc atataaaaat tttgagagat tttcgatatg ctcatttatt
      301 taagatttca aaacaaatta aatatgtaac tagataataa atatgcactt gctcgacctg
      361 aagaaagact atcatgtcca cagcaactat aacgatcatt caccccagga attatcaatt
      421 gaaaaagtaa caaggtatgc agaaaagatt gacttgaata ctttggcctt tacagaacat
      481 gttagaaaga cttctgattg gataccaaga tatttggagg aaatcgacag aattgtatca
      541 tctggaacta agatgaccat aatttctggt tttgaagcaa aaatactaaa ggatggcaca
      601 gttgattttc caaccgaata tgaaggtcat tttctgattg caagttttca tacaaggtat
      661 tacaataaag aagattggct ctcagctctg aaatccgcaa ttgctttacc atatgtgaac
      721 gtcattggtc atttagcccc tgaagaatca tttgacttga cagacgatga attagttgag
      781 ttatcagaac tattaaaact aaattataag acggtagaaa taaacgcgaa atatcgcagg
      841 cctcctatgg aatggttaag aattttcaaa aacaataatg taaattttca cttgggcagt
      901 gatgctcaca atttaactga agtgggtaac ttcaactcta ttagaaacct aatagaatat
      961 gtcaattatt aaaaatgact tagcagtcgc aacagaacct gtgcaattac aattaatgat
     1021 aactggatag gcaattgcag tcctaaatag tgctaaacag agtatcaata tttttgataa
     1081 ttcaaaaaaa gaacaattac atgaaatact attgcgaatt tatttccatc gattaattat
     1141 tttctgtctt acattttgaa aatgtcattc taaattggta ataaacaaca atctttaaat
     1201 tatataaata ggatatagta gagagatttt tcatttatat ggccaagata gtaattattg
     1261 actcacaaat tgctggaatt tctggcgaca tgctcctgag cagtcttatt gacgttggag
     1321 caaataaaaa aaaagttatt gattccattt acgcttgcca gaattatttt aaaggatcaa
     1381 aaatacgcaa tgcagacttt ctaaaaacta gctcttatgg aatttcatgt accaagtttt
     1441 tgtttgatta tacggattca gcaaattcgc gaaaaggaag tgaagtatac agagcgattg
     1501 ctgcttgtag tgattcattg aatttatcta atattgcaaa atcatttgtt ctcaattcat
     1561 tgaaaaaggt aattcaagca gaatcaaaaa ttcatggaag cagttatacc agcgtccgat
     1621 tgcatgaagt ctcgactatt gatactgctg cagacctaat aggtacggcg gttgccttgg
     1681 ataatctgga ccttctttca aaaaaattct atactactga tgtggctgtt ggtaatggat
     1741 tattagaatt ttctcacggg gtagttccaa atccaggcaa tgcaattttg gagattttaa
     1801 gtgatagaca aatattgcta gtacctggta aacttgatgg agagcttact actcctaccg
     1861 gtgcggctat gctggtcaac ctagcttcgg agcatatctc tcagtatcct ccaatcacac
     1921 ctgaaaaaat aggaaatggt ggtggtcaaa aacagggtaa aaatgttgcg aacatactta
     1981 gattagttat tggaaattca aacttaaagt tggactacac ttcagaaagt gtctttgaac
     2041 ttgaaactaa tgttgatgat gttacaggtg agataatcgg aaacatgata gatgtcctct
     2101 atgcaaataa tgcaaaggat gttactgtgc tacatggtat atctaaaaaa aacagaccct
     2161 catttgtagt caaagtattg gcagacaaag catccagcga tgctcttatt caaattcttt
     2221 taagtgaaac aggttccctt ggatgcagag taagtgaagt aaatagaata acaacatcta
     2281 gatctttcat aactcttccc atatccattg agaatcgcaa atttgaagtc aaggttaaga
     2341 tttcaaagaa tggagatgga tcaattaagt ccataaagcc agaatatgac gacatcaaaa
     2401 atatttcaac agtactgaaa attccttaca agaaagtctt tgatacagta tatcacgagt
     2461 taatagtaaa atacaagtga taatgaattt ggaagataaa ttttttcaac aattggtatc
     2521 atggtttcat ggtaagaatc aaaagaccat aattgcattg tccgggggag tagatagtgc
     2581 cgttgttgct atggcagcaa agaaagcatt ggacaaaaac gccattgctg ttactgcaga
     2641 ttataatact ctttctgctg atgaattaaa gtctgcaaaa aaaattgcaa aggagataaa
     2701 cattgaacac aaagtaataa aatataatga gttagataat atagaatttg tcaagaatga
     2761 ttcattacga tgttatcatt gtaggactga attgtcaaca tatttgttga aggaagcaag
     2821 acaaatgaat gtacatttga tcgtagatgg tacaaacaca gacgatttga ctgattatcg
     2881 tccaggaatc aaagccttga gagaaaatgg tatcctaagt cctcttgtag aactaggcat
     2941 aaacaagcaa aatgtaagaa atattgctaa atcaaataat ttatcagtat atgacaaacc
     3001 ttcaaattca tgtttggctt caagaatacc ccatggaatg cccataacat ttgaaaaact
     3061 caaaagaata gaaacagcag aatcattggt caagtccatt ttcaaagtca aacaggtaag
     3121 agtcagagat catcaagaca tcgcaagaat cgaagttggg agagaagaaa taaaagatat
     3181 gcttgataca gttaaattct cagaaataga ttcaaaatta aaagacttgg gattcaaaca
     3241 tatagcgcta gatctatcag gctacaaaag tagagagaat atcaatactc attcgagcaa
     3301 caaaactaat ttagatctag aacaagtcgg cacaaattcc aattccattt gaatgattga
     3361 ttttgataga aagattaaca ttgagcagat tacaaaaaaa gacatggcaa aactaaagga
     3421 aggagatgta gctcctgatt ttgaattacc cgatattgac atgaacgtgc ataagcttaa
     3481 agagtttaga ggtaagaata cattactggc attctttccg gccgcagaat ctccagtatg
     3541 tactactgaa atgtgcgttt tcagagactc tctgagcgaa tttgaaaaca ataataccgc
     3601 agtattaggt atttcagtag atggtccatt cgcaaataaa atatttaaag taaacagaca
     3661 cctaaatttc cctcttttga gcgattacaa gaaagaaaca attagtgact atggtatagt
     3721 aatgaaggat cttggacctt tgaaggatta caatgcggca aaaagatctg tcttcctact
     3781 agacaaagag ggagtaatta agtatatttg gatttcagac aacccgctga ttgagccaaa
     3841 ttatgatgaa attagaagta aattaaaaga aatcaataac tgaaatgcag gttacaaaac
     3901 atgtttgagt aatatccaat acaggattgt tcttttattc tattactgcc acaacatcgt
     3961 ttcttgatac ggtatcgcct atttttacct ttgtgtctct aatttgaccg tctttatgag
     4021 cctttacagc aacttgcatc ttcatagatt caagtacgat tatagagtct ccttttttta
     4081 tttggtcacc tgcatttacc ataatggata caactctacc tggaatttga ctcaagagtt
     4141 tgttttctcc tgacgaagat ccccctaatg ccatggattt ttccaatatt tcagttaatt
     4201 tagaatgctt cttgagaaca atttgctcgc cattcatcaa caatttgata tgagagctgc
     4261 cgaattctag tatcttggct gttctatatg aattgtctaa aataaattcc aatatactat
     4321 ttttgagacc gactattttt atagaatgtt ctttaccatt tatagtagca accattttgc
     4381 catttccact agattcttta attgaacctg atagtatgtt atcggagttg tctatcttaa
     4441 attccatttt taatatttcc tgttcttacc cagttagaca aagcaagctc ttttgatgaa
     4501 tttcctgcac tgtattgtcc cttcagatat tctgaaaaaa gcagagcggc ggcgattgcg
     4561 gtatcagatt cctttaggtg cttttctttg agttcacctt gcattacatt taacatattg
     4621 tacttttcca ggtaatctgt ggagatgttt ccattaataa agttcttctc atccattatt
     4681 gttctgtata gaggaatagt agtgtttatt ccttctatca gaaattcatc caatgcattg
     4741 gacattctta ctcttgcttc attaaagtct tgtccccatg ttatcaattt tgcgaccaaa
     4801 gagtcataat agcctgacac actgcaccca ggatacaaat atgtatccac ccttacacca
     4861 ggtccgtaag gaagattgca atctggtaca agtccaactg atggaacaaa gtcatgaaat
     4921 ggatcttcag cgtttattct gcattctatt gctgaaccgt tcagattgag gtcggattgt
     4981 tcgaatggaa tttcctcacc acatgcaatt ctaatctgca atttaacaag gtcaatgcct
     5041 gtgactagtt ctgtaacagg atgctcaacc tggagacgag agttaacctc aataaaataa
     5101 aagttacctt tttcatccct taaaaattca gcagtccctg cattaagata gtctactgat
     5161 tctgcggccc taacagctat ttctccaatc tttgctctgg ttttcttatc tacgacagaa
     5221 gatggagaaa attctattaa cttttgatga cgtctctgta tggagcattc tcgttcaaat
     5281 agatgtctgc cgttcccact ggagtcccta gcgagttgga actctatgtg tctaattcct
     5341 tgcaggaatt tttcaacata cagtccagat ttaccaaatg ccgctcttga ttcagcagct
     5401 gccatttcaa attcttctct aagcttcttt tcgtcgtctg caaaccggat acctctgcca
     5461 ccgccaccgt atgcagattt gagtagaaca ggatatccag cttcttgagc aatttcaact
     5521 gccttatcaa cttcttctaa gatatcatcg ctacctggta ttgttggaac ttcagctttt
     5581 ttcattattt ctttacactt cattttatca ccagtaagcg ccatagcctc acttgtcgga
     5641 ccaataaaga taattcccct ttcttcacat tttgctgcaa atgtctcatt ttcggaaaga
     5701 aatccatacc ccggatgaat tgcttcagcg cccgcacttt cggcaatttc aattatcttg
     5761 tcaatgttaa gataactttt ggtcggtggt gggggaccga gatagtatgc ttcatcagca
     5821 ctctttacat gttttgatcg tagatcctca tcggagtaaa gtgcaataga ttttatcttc
     5881 atttccttgc aggctctaat gactcttagt gctatctcgc ctctatttgc aattaatata
     5941 cttgagatta attttcccat ttcaaatctc ccctaaagat taatgttacc atgtttccta
     6001 accggtcttg attccctctt attctgcaat acatttagag cctttacaat cattatccta
     6061 gtttcaatcg ggtcaataac aagatcaatt attccctttt cagctgctat gtatggattt
     6121 gcaaactttt gacgatattc ttttgccaat ttctttttga tctcaactgg gttcttggaa
     6181 ttcctgagat cctttctgtg aacgattgtt atggcagcct ctggacccaa aacggcaatt
     6241 tctgcagttg gccatgcata atttatgtca gcccgaaggt tcttactacc cattgcaatg
     6301 tatgcaccac cataagcctt tccaataata catgttactt ttggaaccgt tgcttcacag
     6361 taagcatata ataacttgct accatgtcgt ataataccat tatgttcctg atctgtcccc
     6421 ggcatgtaac caggggtatc aacaagagta acaattggga tgttgaaaca atcgcaaaag
     6481 cgaatgaagc gagctgcttt ggttgatgaa ttgatatcaa gtgcaccggc aagatacatg
     6541 ggttgattgg caataaatcc aattgctttt ccatcaattc ttgcaaaacc aactagaata
     6601 ttctccgcaa aatgttcatg tacttcaagg aaatcgcctt tgtcaacgag taatttaata
     6661 atttgcttca tgtcgtactg ttcataagga ttttccggca atatttttga gaattctggt
     6721 tcgagtctat ttgaatcatc ctgtgactca gtaacaggtg atacttcaag attattctga
     6781 gggataaatg aaatcagtct ttttattttg tccatgcatt cgtattcgtt ttctgcaaca
     6841 aaatgggcaa cccctgattt tgttgaatgg gttcttgctc cacccaggtc ttcaaaagac
     6901 acttcttggc tgagaacttc ctttactact tcgggccctg taacaaacat ttgaccaata
     6961 ttttcaacca ttataacaaa gtctgtcatt gcaggtgaat aaactgctcc accggcacac
     7021 ggaccaatac ttgctgttat ttgggggatt acaccagaag ccatagtatt tctaaaaaat
     7081 atatcaccat atccgtcaag actcattaca ccttcctgga ttcttgctcc tccagaatct
     7141 aaaatcccaa tgagtggggc accaaccttg attgcatgat ccatcaattt tacgattttc
     7201 ttgcctgcca tttcaccaag ggaaccaccc aaaattgtaa aatcataggc ataaacaaag
     7261 acctgtcttc cgttgatagt accaaaaccc gtaataacac catcaccata gtattttgtt
     7321 gaatcagcat cagtagatct gtggacaaca tacttgtcta tttcgataaa ggaattactg
     7381 tccagaagta aatccagtct ttctcttgcg gttaatttcc cctttgtgtg ttgagcatca
     7441 attctctctt ggcctcctcc tatctctgct ttttttttca tttcgtgtag gcggtttatc
     7501 ttttcatcat gcataacagt tttaaacagc atatattcgc atataaattc attatagcta
     7561 aatctagaac ttaactagat agtgatgcac tttttccgat aattcattga ttgatggtag
     7621 agatgaggtt tttattccct caaacctgcc cttccgcctc tcgcacgtcg gaagtagttc
     7681 atgcctaaat tataattatc atacaatgac tctaacgatt ctatttcaga caaaaggctt
     7741 tcaagttggg tttttgaaac gctggaatca tttttcatta attcatactt ttcaatcttt
     7801 tcggcgagga gctttccaac gttctgttcg tactcgctag acataagaat tagagaattt
     7861 ttgggggttt aatgtttttc tatttcattg gataagtgtg taaactacca ttatcagtaa
     7921 gtagattact tctaatatta ttccagaact tgtcgtttgg attcagaacc gtattctatt
     7981 ttgtcgttaa attctatcag cgagctatct cttctgttcg tgatatttct ctgaccatgg
     8041 catcagcttc tttttctgat gtaatggtac ttctaatcaa gttttcatac tcagttgtgc
     8101 gggtcaagat gtgtttcaga ggttcaaagt aaacagaacc aaaagtactt cttgaagtat
     8161 ggaaaaattt tgctaggatt cgtatggttt ttttcaatcc ctgagccctt gaaaaaatgc
     8221 ccatgtgctc aaagccgatg ctatatctgt tgtatcgaat atacttattc cgtgactcgt
     8281 aaaataatga tttagttagt atcagtggga aatatctcaa tatcttccag tttctcataa
     8341 caagagatct actcaagatt acatcgagct ctgacagtcg gtctaaaagt agagcgatgg
     8401 tggtgatatc gatctttgac atgacaatgg ttgagaaaaa agcagcgagt atgtctttgc
     8461 gcctatcttc agaagactgt ccaaatctag ggtccgaata ggatatatcg gccctctgaa
     8521 cgacatccag tgcttctcca aaagtcgtgg aagaaaagaa ttggtttatc gtgttttcta
     8581 tatcaatatc aactcccgga tttttcgttg ttgtatatcc cgccttcatc acctgtgctg
     8641 cattcaatag agacctaata tcaccaaggc aattacgtac tactgcaatc ctgtcctctg
     8701 gtttcattaa agagttttga agtctaagaa tcctatccaa ataaagcatt gatagccttg
     8761 gagggatcgg tgagaacgtg attgtttttg atactttaga aattttcttt attgcctcat
     8821 ttgacttgtt tgctgccata actaccctta ttgagggttc tttgaataaa tctagcaaaa
     8881 aatccagtcc tcctgaatct tccctatttg aaattccatc tatctcgtct agaaaaagga
     8941 gaaagttttt cccagtaaga ctagcatttg aaaagatagg ggagataacc tgagcaagca
     9001 agttcttatt acgagaatcg cttgcattta attcaaccag atcgatatca aattcgtggc
     9061 atattgcatg aacaaatgat gttttaccaa caccgggtgg tcctacaagt aacagaggct
     9121 ttgatccatc tgaccactta actatccatt ccactacttt tttacgagaa ttttcattgc
     9181 caacaaattc tgatattttg ggacggatca caaatcaaca cctacatatt aataatatta
     9241 ttaatgtcac ttggaatttt tgatacttat tgagagattc ttttggaaat acgggaacaa
     9301 gtctctacgt ttcatttcat taaaccagta ttgattatag tgactcactg tcaggaatag
     9361 gaatttcagg aaaggcttta ttgttaactc ttctggtaac atcttcaatg ctatctttgc
     9421 ttcatccaga tagatttcgc ttttatccaa tgttagctca aatgcttttt caacattttt
     9481 tgtaactatg gaatagtata atggccatga tggaatcttt attcccccgt ttactattgc
     9541 atcttccatt tcattgccac atccaacaca ttcagctgcc tttgccatac ccaaatgaaa
     9601 gatatcgttg agaggaggga gatttaatgc catgtttcta cccgctgttc ccatgaccgc
     9661 tcgatatttt ttgtaacatc caatcatatt ctcatcacta atagattcag gtttcaattt
     9721 taatctggca tcaatatact gtccaattct tgcatcttta aatccatctt caaaagcctt
     9781 tagtactgca tcgcctccaa tcgagatctt ttgtcgcgct atctcaagaa tatagggatt
     9841 catcagcttg taatcatcca gaaattcgat atcttcatca gcgtccatta tcctgtccat
     9901 tggttcacta aggtcaatgg caattacatg cccatcaata atagcgttcc ttacctcttt
     9961 agaaatagtt tctttataga aatctgaagc actgtcaaaa agagcggtga ggacaggaaa
    10021 ggtcatcttt acaaagttag aattcagtat cctctgtacc ctatcggcca agacgtctgg
    10081 ttttgagagc ctttcccgta ctgaatcaat ctttgagtca tctaaggata aatcatttgc
    10141 ttctatctcg tccacaaatt ttttcattgt tgcttttgga tttggatctg aaatcagttt
    10201 ttgatgcaaa gatagtaaaa atctttttgt aaattccgta aattccgttt cagactgagc
    10261 cttgtatttg ctatattgtt tatacccttg ttcctgtaat aatacatttt ttattatttt
    10321 cttacctgaa gtagttctca atagtgaaac ctttgaaaaa attttatttt cttttgcgct
    10381 catttacaat tctttcagaa tattccgtcg ttatttaact ttcagcataa acatatttac
    10441 tttgaaattc aaagatcaag aaagtgggga ttgatattta gtagagcaaa cgccgctacc
    10501 ttgacgacat cgcaattctt tcttgttcat tcttcttctt tacagaatga ctttccatgg
    10561 aattttttga tgcagaaatg atctcttttg ccaaagcctc ttcgatggtc cttggatttg
    10621 aataagttga ttcccttact ccttctgcga taaacctgag tgcaagatca atacgtctta
    10681 agggtgccac atcaacagag acgtgatata caacaccacc ataaacgatt cttgtggtgt
    10741 cctcgttcgg cgcagcattt tcaattgccc taattagcag ttccactgga ttgttgccag
    10801 tttcatgata gattaagtca agtgcagttt tcacagtttt tatcattctg ccctttttac
    10861 ctcccattct tccagtattt ttcgcatatt tcttgccaaa gtgcattagt ttgtttacca
    10921 gtctttcaat aatatggact tctgctttct ttaatcgctg atgttcatgc cttccaaagc
    10981 taataggaat tattgcagga tctaatgcaa tgacattttt caaacctgaa tcctggattt
    11041 caatatcatc tgtcttccac ttgttaaaca acagcatgac actttctttt gtaaccattc
    11101 aaatcatctc cttggttttt cttttcttcc gtagaccagc tcta
//
LOCUS       DASUMD010000047         2528 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_895970, whole genome shotgun sequence.
ACCESSION   DASUMD010000047 DASUMD010000000
VERSION     DASUMD010000047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2528)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2528)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2528
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_895970"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..316
                     /locus_tag="VFX26_01205"
     CDS             <1..316
                     /locus_tag="VFX26_01205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573123.1"
                     /translation="SKTFILWWVIRLMRFLVRAQISTDAGNKMVKNPKFLQNLEDYMK
                     KVNAEAAYFFEAGGERTFAFIVNMDTADMMPSIAEPLFQDLGAKVEFHPVMVLDDLKK
                     AL"
     gene            709..1086
                     /locus_tag="VFX26_01210"
     CDS             709..1086
                     /locus_tag="VFX26_01210"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PPOX class F420-dependent oxidoreductase"
                     /protein_id="HEX5573124.1"
                     /translation="MSEDKLSQLSNFKYINIETYKKNGSGVRTPIWFIIYQGFIYFRT
                     DAKSGKVKRIRNNPHVRIAPCDIRGSVKGDWYEGKAKLADSAESSFVYSMIDKKYGFI
                     TTLIRSFNKIRGTNPVILAIMLD"
     gene            1280..2224
                     /locus_tag="VFX26_01215"
     CDS             1280..2224
                     /locus_tag="VFX26_01215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HEX5573125.1"
                     /translation="MEMEKETTGGKTNFIDNSDGTSAKARSIRLVTKSNETPEGDGFL
                     VHRSFPSQSIRNLDPFLLLDEMGPLDLLPYESKGFPEHPHRGFVTVTYMLEGRFEHKD
                     SQGNSGKLGPGDVQWMTAGSGLVHSEMPEREFAKSGGRLHGFQLWINLRKTDKWNKPD
                     YQDVPSTKIPQVSTSDGKVSVKVIAGNFGEAKAVINTLTPILYLHFTLQPGGEVVQSV
                     PENLNAFAYVIGGKGLFGNDKTAVDEKNLIVFKNDGGNISIRESDDAKSPLDVLLVAG
                     MPLNEPVVQYGPFVMNTREEIDKTLEDYRNGRIGKIDF"
BASE COUNT          825 a          403 c          511 g          789 t
ORIGIN      
        1 ttcaaagact tttatacttt ggtgggtaat taggcttatg agatttctag tacgtgcaca
       61 aatttctact gatgccggta ataaaatggt gaagaatcca aaatttttgc aaaatcttga
      121 agactatatg aagaaagtaa atgctgaggc tgcttatttt tttgaggcag ggggagagag
      181 aacattcgca ttcatagtta acatggatac tgctgatatg atgccaagta ttgctgaacc
      241 attgtttcag gacctgggag caaaggttga atttcatcca gtaatggtat tagatgatct
      301 aaaaaaagca ttgtaacgct taggttaaac gttctgtaaa tgagatgtag agtctaatca
      361 gctaaagagt tgtgtagacg acaatgatga aatcactaag atagagtttg caggaccatt
      421 tgtactgggt ggtgtcataa ttttgcattg tattttaatt ttggaaatat taaatcaaaa
      481 gatgaaactt agataattag aattaatgtt actaatgctt gaatttgatg ctgctgcaca
      541 tgtgctaatt tagggaaatt attttattta ctcatgatga gtcatgatga gctctggaac
      601 attccacatt gcacattcgc tttttccact ttcttgtaat gacagtgaga tgcgaccatt
      661 ttcagaaaga ttcactaata agtccattgt atgttgaaag taatatacat gtctgaagac
      721 aagctatctc aactatcaaa ttttaagtac attaacattg aaacttacaa gaaaaatggc
      781 tcgggagtta gaactcccat ttggttcata atttaccaag gttttatata ttttagaact
      841 gatgcaaaat caggcaaggt aaagaggatt aggaacaatc cacatgtcag gattgctccc
      901 tgcgatattc gtggaagcgt taaaggagac tggtatgaag ggaaagcaaa gcttgctgat
      961 tccgcagaat cgtcatttgt atattctatg attgataaga aatatggatt tataacaact
     1021 ttgattagat catttaacaa gattaggggt acaaatcccg taatactggc aataatgctg
     1081 gactagactc ggaattaata tccctcataa tttggaatta ttacctgaaa ttcagaatta
     1141 tttatttttt tctttatgac aaggccgcta cgaaaagtta cttgaaattg tatcaaaaat
     1201 tggctaattg ctgacattat tatctagcca ggtcagagat tacaacctta cttaaatagg
     1261 atattattta aaatagaata tggaaatgga aaaggaaaca actgggggaa aaaccaattt
     1321 tattgataat tctgatggaa ccagcgccaa ggctcgatca ataagacttg tgacaaaaag
     1381 taatgaaact ccagaaggtg atggcttttt agtacataga tcctttcctt cacagtctat
     1441 tcgaaatcta gatcccttct tactgttaga tgagatgggt cctttagatt tgttaccata
     1501 tgagagtaaa ggctttcccg aacacccgca cagaggtttt gtaactgtta catacatgct
     1561 tgaaggaaga ttcgaacata aagactctca gggaaactct ggaaagcttg gacctggcga
     1621 tgttcagtgg atgacagcag gatctggctt ggttcactcg gaaatgccag aaagagagtt
     1681 tgctaaaagt ggtggaaggt tgcatggatt tcagttatgg ataaatcttc gcaaaactga
     1741 caagtggaat aaacctgatt accaggatgt tccttccaca aaaattcctc aagtcagtac
     1801 ttctgatggt aaagtatctg ttaaagttat tgcaggaaat ttcggtgaag ctaaggcagt
     1861 aattaatact ttaactccca ttttgtactt gcactttacc ctgcaaccag gaggagaagt
     1921 cgtgcagtcc gttcctgaga atcttaatgc atttgcgtac gttattggtg gtaaaggtct
     1981 ttttggcaat gataaaacag cggtcgatga aaagaacttg attgtgttca aaaatgacgg
     2041 tggaaatatt tcaattagag aatcggatga tgcaaaatct cctctggatg tattgcttgt
     2101 ggcaggaatg cccctcaatg aaccagtagt gcagtacgga ccattcgtta tgaatactcg
     2161 agaagaaata gataaaacat tggaggatta tcggaatggt agaattggaa agattgattt
     2221 ttaaaaagta ggacatttct attctattca tttttatttt cctattttgt tttgctttac
     2281 gtgttttcat aagactatgc actagtattt ttaacccctc ccctcgcgca tgctaactaa
     2341 aattctgaat atgccaactt tggcatgttc ttctgttatt aggatcagcc ctccctctct
     2401 aaaagtagct ccttgattaa aaagagttca atgcactaca gctaagctcc atgtcaaagc
     2461 tcattgaaga aaaattagac atacctgcac aaaatgaaat taagaatctg aagcttaaga
     2521 ctgcttat
//
LOCUS       DASUMD010000048         2143 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_122043, whole genome shotgun sequence.
ACCESSION   DASUMD010000048 DASUMD010000000
VERSION     DASUMD010000048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2143
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_122043"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(49..>2143)
                     /locus_tag="VFX26_01220"
     CDS             complement(49..>2143)
                     /locus_tag="VFX26_01220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="helicase-related protein"
                     /protein_id="HEX5573126.1"
                     /translation="NYDIDVKYLKGAISNVAKFVSKYLTENKICGSVLLFTNTRDEAE
                     YIGTTIRNQNNIPIEVHHGSLSRETREETEIKLREGLTGIVVCTSSLELGLDIGSVEL
                     VIHYGSSKQVSKLVQRIGRSRHANYKSAKGLIIANSGDDELECLSLINRMKKKSIEIQ
                     NPHTNSLDVVAHHLVGFVISTSESKKLEEVYQIITRAYPFRELPFSDLEQCVVLLDSF
                     KIIKYDSKNQTYSRRIKAYKYFFENISTIPNIVKFEVFDVIRKKRIGTLDQQFIGEFG
                     ERGNVFILKGTQWRIISVDDNKLQVNVEQVFGSPINIPHWVGEMIPVDYETAVEVGKL
                     RNKVLSDGNFKFESDIRNTLQKLPIIPDARNIVIESVISKNAVVIHSTLGTKINNTLS
                     SLLSTFLASYVGHLVETKSDPYRILLSSSVRLSKGNIEKIFYDEYDVETILITSLTNT
                     YNLNWRVWMVSKKFGLIDKNAVYDKRLARFIYDRYSKTAISKESIRELIHDKFDVKST
                     QDVLRKIRNKEISIHWLDLSDFSPLAQSIVEHHSKSSSTPLSIERGVLELIKDRLDKT
                     KHRLICIRCGKWERLVETREVMDSISCKKCGSRLITTTFSSDYELSKIISNKLRGSEI
                     NSEQNHKFERAWKAASLINNFGKKALTVLSGYGIGVETAARILRNYVDDENLYKNIYD
                     AERQYVTTRGFWNDN"
BASE COUNT          618 a          419 c          318 g          788 t
ORIGIN      
        1 aggtagcaac gtgtcactac ctacaaatac ttttttgtct ttagctgatt agttatcgtt
       61 ccaaaaccct ctagttgtaa catactgtct ttctgcatcg tatatattct tgtataaatt
      121 ttcatcgtca acataattgc gcaatatgcg tgcagctgtt tcgacaccta ttccataacc
      181 cgatagtact gttaatgctt tcttaccaaa attgttaatc aacgacgctg ctttccacgc
      241 cctttcaaat ttgtgattct gttctgaatt gatttccgat cccctcaact tattcgagat
      301 tattttggaa agttcataat cagaagaaaa agtagttgta attaatctcg atccacattt
      361 tttgcaagat atagagtcca ttacttccct tgtttcaacc aatctttccc acttgccaca
      421 tcggatgcat atcagtctat gtttggtttt atcaagtcta tcctttatga gttctaggac
      481 tccacgttca atgcttaagg gagtagatga cgatttggaa tgatgttcta caatactctg
      541 agccaatgga gaaaaatctg ataaatctag ccaatgtatt gatatttctt tgttccttat
      601 ttttcgaaga acgtcttgcg tagattttac gtcaaactta tcatgaatta actctcttat
      661 ggactccttg cttattgcag ttttagaata tctgtcatat ataaaacggg ccaatctctt
      721 atcgtagact gcatttttat ctatgagacc aaatttcttt gataccatcc aaactctcca
      781 attcaaatta tatgtgttag ttaatgatgt gataagtatt gtctctacat catattcatc
      841 ataaaaaatt ttttcaatat ttccttttga caatctaacg gacgaactta acagaattct
      901 atagggatct gactttgttt ctactaaatg tcctacatac gatgcaagaa aagtggataa
      961 tagagatgac aacgtattgt ttatctttgt acctaaagtc gaatggatta caactgcgtt
     1021 tttagaaatg acactctcta tcacgatgtt cctagcatct ggtattatag gaagtttttg
     1081 tagtgtgttc ctaatgtcag attcaaactt aaaattacca tcagagagaa ctttatttct
     1141 gagcttacct acttctaccg cagtttcata atcaaccggg atcatttcgc caacccagtg
     1201 gggtatattt ataggagatc caaaaacttg ctctacattg acttggagtt tgttatcgtc
     1261 aacacttatt attctccatt gagttccttt taagataaac acattgcccc tttctccaaa
     1321 ttcacctata aactgttgat ctagagttcc tattctcttc tttcttatca catcgaaaac
     1381 ttcaaatttt actatgtttg gtatagtaga aatattttca aaaaaatact tgtacgcttt
     1441 tattcttcga gaataagtct gattcttgga atcatacttt atgatcttaa aactgtccaa
     1501 taacaccaca cattgttcca aatcagaaaa aggaagttcc ctaaatggat aggcccttgt
     1561 aatgatttga taaacctcct ctaatttttt tgattccgat gttgaaatta caaatccgac
     1621 taaatgatga gctactacat ctaatgagtt agtgtgagga ttttgtattt ctattgattt
     1681 cttcttcatt ctatttatta aagataggca ttctaattca tcatccccac tgtttgctat
     1741 tatcaaccct ttggcagatt tataattagc atgtctactt ctaccaatcc tttgtacgag
     1801 ttttgaaacc tgtttggatg agccataatg aatcactaat tctacagatc caatgtccag
     1861 gcctaactcc agagaagatg tgcaaacaac gatgccagtt aggccttctc taagtttaat
     1921 ttcagtttcc tctcgtgttt ctcttgaaag ggatccgtgg tgcacttcaa tcggaatatt
     1981 attttgattt cttattgtag tacctatgta ctccgcctca tctctagtat ttgtgaatag
     2041 taacactgat ccacatatct tgttttcagt cagatatttc gatacgaatt tggctacatt
     2101 acttatggcg ccttttagat attttacatc aatatcatag ttt
//
LOCUS       DASUMD010000049        11430 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1338698, whole genome shotgun sequence.
ACCESSION   DASUMD010000049 DASUMD010000000
VERSION     DASUMD010000049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 11430)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11430)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11430
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1338698"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(104..523)
                     /locus_tag="VFX26_01225"
     CDS             complement(104..523)
                     /locus_tag="VFX26_01225"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEX5573127.1"
                     /translation="MKRKRISSILVAIDGSEYSDKAFEYACELSIMKNIPLKIINVVE
                     EYATVGYSILRELKKSSRQMLHQYKGRAESLYIQNASTIHCVGNAAEEILKIANGKDV
                     DTLVIGSKGKYGTSIDMLGGTSYKLVHYSKCTVTVVK"
     gene            complement(635..1321)
                     /locus_tag="VFX26_01230"
     CDS             complement(635..1321)
                     /locus_tag="VFX26_01230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VIT1/CCC1 transporter family protein"
                     /protein_id="HEX5573128.1"
                     /translation="MKFSIENFVYGAIDGAVTTFAIVTGVIGASLSPSIIIILGFANL
                     LADGFSMAIGNYLAVKTQNEFIQREKKREEWEIDNRVDEEKQEIREIYSKKGFKEELL
                     DEIVRVITSRRKVWIDTMMREELGLIEGKYSPIVSAVNTFFGFNAIGIIPLIPFIFVY
                     LSGSNISISNALLYSIVATASSFFLIGNIRGKVVHKPIIASGFNVVLIGGAAAAVSYC
                     IGYVLSTIIR"
     gene            1442..2809
                     /locus_tag="VFX26_01235"
     CDS             1442..2809
                     /locus_tag="VFX26_01235"
                     /inference="COORDINATES: protein motif:HMM:NF012544.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEX5573129.1"
                     /translation="MPAIDTGPGLRRSVTLVQAVMYGIGLILGAGIYVLIGDVAAIAG
                     NAMWISFLLAAAMATLTGLSYAELSSVFPKSAAEYVYVKAGFNNEFLALFIGCLTIFV
                     AITSAATVAIGFSGYLAILLPGYPPILYAIGLVLALSFLNYYGIRESVWVNSIFTLVE
                     VSGLLIIIGVGLSIGSVADTNYFEMPGIAYSSHAAIISTILASTVLVFFAYYGFENIS
                     NISEETKNPTRTIPRALVFSILVTTIIYVLVAVSTVALVGWEELSNSTAPLALTASKA
                     LGNNGIIILTILALFATTNTVLMMLISGSRIIFGIAKYDEAIPTILAEVHSARKTPWL
                     AIIFIMAFTLATIILYYGKLTDVASISVFSILVVFVFVNFSVISLRFKQPTLQRPFMS
                     PFKVMQVPIFPVLGLIMTMVIMLQFNYHVVLSAVVPLISIMILCLILTKRKIDQKQKQ
                     KSLKS"
     gene            complement(3050..3541)
                     /locus_tag="VFX26_01240"
     CDS             complement(3050..3541)
                     /locus_tag="VFX26_01240"
                     /inference="COORDINATES: protein motif:HMM:NF012241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HEX5573130.1"
                     /translation="MTSGKSEITRKALFPTAFDDIFEGFRKDIEDRLYFPTWNFLGRR
                     NELLSDLETETRFPLCDMEDLGDKYEVTLEAPGIPKDKINVKAGTDYIDISGEQEKKT
                     EEKRKNYLYNERSYSSLRRRISTPEEIDPSKIDAKMENGVLHIQVPKKTPTQSKETKV
                     EVK"
     gene            complement(3707..4213)
                     /locus_tag="VFX26_01245"
     CDS             complement(3707..4213)
                     /locus_tag="VFX26_01245"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEX5573131.1"
                     /translation="MNLTTISVSDLMNPKVKTVNEDKNIMSACRVMQENNIGCVIVVT
                     IAGDGTPVGIITERDVVRILSKFNPVLVHFALWKVMSKPLFTIEPSASINDAIKLMND
                     KKIRRLVVVDKNNEMIGIMTQKDIFKVIEKNPMLLEEFYGDNFSPSFKEVYERFSQYR
                     FENLAPDL"
     gene            complement(4286..4744)
                     /locus_tag="VFX26_01250"
     CDS             complement(4286..4744)
                     /locus_tag="VFX26_01250"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEX5573132.1"
                     /translation="MKDLFSKILVPIDGSDYSFKAAEYAIDISRRYQSKITLISIVAS
                     KVRYGDSSGIFGAIPPSYLKKYENEARKWFNRVLEKVKKDGLEIKKIKTDVITTPLSI
                     VSTILQYAEKDDADLIVIGTRGITGFKRMLVGSVASGVVTYAHCSVLVIR"
     gene            complement(4823..5218)
                     /locus_tag="VFX26_01255"
     CDS             complement(4823..5218)
                     /locus_tag="VFX26_01255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573133.1"
                     /translation="MNTLKQSMKANEKSEFVVREYFKRIKSGDVQGTLSLFSDNAVVH
                     EPFSKSKYLSGKLEIEPFLSSVVMANQGLDYGLKIEKDNQGDNTALIADVIFRKEGSI
                     RCRITFQLENTRADKSVSTIKLMDIQFID"
     gene            complement(5296..5892)
                     /locus_tag="VFX26_01260"
     CDS             complement(5296..5892)
                     /locus_tag="VFX26_01260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573134.1"
                     /translation="MNSSDPEKVTTPKKTKSITFRLDTTVIDELQREANGAEISLNVL
                     VNQVLRRYIEWDRYENKVGMIPIPKSILCSLINQTMEVAAEAKIADLEAYKDKIVKHA
                     AESALKVMKDTVLFMRNDYSFWTVLDVLRRYMKVAGITSDHRVEQERKHVFIIQHDLG
                     ETWSLFAKELLLMIFAELANVKAEINATDKTVKAEVNL"
     gene            complement(6062..7033)
                     /locus_tag="VFX26_01265"
     CDS             complement(6062..7033)
                     /locus_tag="VFX26_01265"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HEX5573135.1"
                     /translation="MVVKIGAAGLCHSDLHLINGDWQKSLPLNLPKTPGHEIAGWVEE
                     TGTLVPKSIKKGDMVAVFGGWGCGFCFYCKRGDEQMCQAAKWPGLSDYDGGFSEYVLV
                     PSYRFLIRVDEQTTLLKPEELAPLTDAGLTPYRAIKKVRHILGPNRNVAIIGIGGLGF
                     YATQYARILGSGSTVVALDRSDDKLEMAKELGGADFSLNLTESEVGDKIRKITNGEGI
                     DVVLDTVGLESTINLALDILNKSGAIVVVGLFGKEIRTPLFQTVIQEYQIYGSLWGNY
                     NELREVIELAKKGKINHQIHKFPLSRVNEAIDLLRAGNIECRAVIIP"
     gene            complement(7368..7511)
                     /locus_tag="VFX26_01270"
     CDS             complement(7368..7511)
                     /locus_tag="VFX26_01270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573136.1"
                     /translation="MSIGKWHYSFVELFSILVKIFNTVEENGKRDNYKTDAVEIILDL
                     VST"
     gene            complement(7634..8149)
                     /locus_tag="VFX26_01275"
     CDS             complement(7634..8149)
                     /locus_tag="VFX26_01275"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEX5573137.1"
                     /translation="MSSETVSVSKLMNPKVQTDFEDQNIMSACNIMSANDIGCVIVVT
                     RNKDRTPVGIITERDIVRILGKLNPDLFQTSLRTLMSNPIITIEQSASINDAAKIMNN
                     KKIRRLVVVDKDNKMTGILTQKDIFNAIDKNPSLFSELYGNGYSIGFKEIYEKYNQYR
                     LENLMPEFSQY"
     gene            8272..8535
                     /locus_tag="VFX26_01280"
     CDS             8272..8535
                     /locus_tag="VFX26_01280"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEX5573138.1"
                     /translation="MKILVPHDKSSVSEKALRKAILFAKKLNYEILLLHIIDLKILQS
                     DSILKYINEKAALAKAKTQILKYSYRALLHYPNQMNISISGYF"
     gene            complement(8516..8755)
                     /locus_tag="VFX26_01285"
     CDS             complement(8516..8755)
                     /locus_tag="VFX26_01285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573139.1"
                     /translation="MSNETIGKFLLKVYEKTDDNEIGYIDKYEIGEEIGLLDKNQVDD
                     VVKCLVKDGFINVDAGIPKIRITEEGIEQIRNNQI"
     gene            complement(8863..9198)
                     /locus_tag="VFX26_01290"
     CDS             complement(8863..9198)
                     /locus_tag="VFX26_01290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573140.1"
                     /translation="MHCTVLFTIIFSCSELKVMSNTEKVKVRKLALPPVILYSLAGTI
                     IIVGVLLVLVLLGSYGSTSLTLTEGRSHAFTILYAYWLARRIIGILISVGILILIGTY
                     MVDKGWITT"
     gene            9562..9840
                     /locus_tag="VFX26_01295"
     CDS             9562..9840
                     /locus_tag="VFX26_01295"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEX5573141.1"
                     /translation="MLIRKILTALDGSEPSSDTNIHPTDLAKRFQATLIAIHVTDPNY
                     RHLETVLSPRPGRFEEILILVKQEAYRHFGNAKQNALISLANLGNGIN"
     gene            9849..11030
                     /locus_tag="VFX26_01300"
     CDS             9849..11030
                     /locus_tag="VFX26_01300"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX5573142.1"
                     /translation="MVSTEYPPMQGGVGRYCKNLVNSLRKEGLELLVVCNECGEGDFS
                     GISPYNTNNSEVLLRLVKDVQPDIVHVQYEQGLYGMHLNALRPEATTTNIERFYDCCK
                     VPIVSTLHSAYTFDQWMKLIVPLENRILGRFGTLLGVAYDYWTHLINYQSFTSLVKQK
                     IGHNRYGIVFSKYLANLIPGAHLIYHGAEPSAPNPGSKEEARLKFSLPEGGKIALASG
                     FVTATKGWDLLKKMNVPEGWNIVINGSKNHYNMERHKTKFKQSEIIELQEEFLNEEQL
                     SLLFYAADAVLLPYKVTSGSGAMFDGFAHGLPFISSDIPFFREFSDIGLGISVPRHPN
                     QFSRALITLEQKLDRYKDTVEMFSKKLLWEEIADKHMMLYNLIVNDPNSPLLKENLFK
                     Y"
BASE COUNT         3412 a         2233 c         1917 g         3868 t
ORIGIN      
        1 tactttcgtt agttatatta tatttacaaa tttttaatat agacctggat tgaaatatct
       61 tttaagaaag gggacatttg gtaacaatat cagtaagata tctttatttt acgaccgtta
      121 ctgtacattt ggaatagtga acaagcttgt acgatgtacc acctagcatg tctattgatg
      181 ttccgtactt tcctttactt cctatgacca atgtatctac atctttccca ttggcaattt
      241 tcaaaatttc ctcagctgca ttacccacgc aatgtattgt gcttgcgttt tggatatata
      301 atgattcagc tcttccctta tattggtgaa gcatttgtct gcttgacttc tttagctctc
      361 tcaaaataga gtatcctaca gtggcatatt cctctacaac attgataatt tttaggggaa
      421 tgtttttcat tatggaaagt tcgcaagcat attcaaaggc tttgtctgaa tattcagatc
      481 catcaatggc tacaagtatg gaagatattc ttttacgttt caatatggat catgatattt
      541 acaaaccatt ataattattt ttttgcaaaa atcagattct aatccaaggt gtgtataatt
      601 tatgctttaa aataagggat ttttagatat cggattaacg aataatagta cttaagacat
      661 atccaatgca ataagaaacc gcggcagctg ctccacctat taaaacaacg ttaaatcccg
      721 aagcaataat tggtttgtgt actactttac ctctgatatt tccgatcaag aaaaatgaac
      781 ttgccgtcgc tactattgag tacaataaag cgttactaat tgatatattt gagccagaca
      841 gataaacaaa aatgaaaggg attaacggga ttatacctat tgcattaaat ccaaaaaagg
      901 tatttacagc gctgacaatg ggactgtact tgccttcaat taatccaagt tcttctctca
      961 tcattgtgtc tatccacact ttacgtcttg aagtgattac tcttacaatt tcatccaaaa
     1021 gttcctcttt gaagcccttt ttgctatata tttctctgat ctcctgtttt tcttcgtcta
     1081 cgcgattatc aatttcccac tcttctcttt tcttctctcg ttgaataaat tcattctgtg
     1141 tttttactgc caagtaattt ccgatagcca ttgaaaagcc gtcagctagt aaatttgcaa
     1201 atcctaatat tatgatgatc gatggtgaaa gcgatgctcc tatgactcca gtcacaattg
     1261 caaaagttgt cacagcaccg tctatcgcac catacacaaa gttttcgata gagaatttca
     1321 taatactata ttacctgact tgttttaaac acttggtgta tagaaatgag taaaaccata
     1381 ctgactcatt ccatattgcc tgatctaata gtttagataa taacaaatgt aaaaccgtat
     1441 tgtgcccgca atagacaccg gtcctggact cagacgaagt gttactctag ttcaagccgt
     1501 gatgtatgga atcggattaa ttttaggtgc gggaatttac gtgctaattg gagacgtagc
     1561 agcaattgcc ggcaacgcca tgtggatttc atttttgctg gcagcagcaa tggctacatt
     1621 aaccggatta agctatgctg aactatcatc cgtttttcca aagagtgctg ctgaatatgt
     1681 ttatgtgaaa gcggggttta acaatgaatt tttggccttg tttattggtt gtttgacaat
     1741 ttttgtagct ataacttctg cagccaccgt agcaattggt ttttcaggtt atttggctat
     1801 ccttcttcca ggatatccgc ccatcctgta cgcgataggg ctagtcctag ctctatcatt
     1861 tttgaattac tatggaatta gggagtcagt gtgggtaaac agtatattta cattggtaga
     1921 agtttcggga cttttaataa taataggagt aggattgtcc atcggatcag ttgcagatac
     1981 taattatttt gaaatgccgg gtattgcata ttcttcacat gctgccatta tctcaacaat
     2041 tctagcatcg actgtgcttg tattttttgc atattatgga tttgaaaata tttccaatat
     2101 ttctgaagaa actaaaaatc caacgagaac aattccaaga gctttagttt tttctattct
     2161 agttactaca ataatctacg tcttagttgc cgtttccact gtggctttgg tgggatggga
     2221 agaattatcg aattcgactg ctcctctagc acttacagca tccaaagcat tgggcaacaa
     2281 cggcataatc atactaacta ttcttgcgct gtttgctacc accaatacgg ttctgatgat
     2341 gctaatttcg ggatcaagga taatttttgg aatagcaaaa tatgacgagg caatccctac
     2401 tatacttgct gaagtacatt ccgccagaaa gacaccatgg ttagcaataa tatttattat
     2461 ggcctttact ttggcaacta ttatactgta ctatggtaaa cttacagatg ttgccagtat
     2521 ttcagtattc agtatattag ttgtatttgt attcgtcaac ttttctgtaa taagtcttcg
     2581 attcaaacag cctacattac agagaccatt tatgtctcca tttaaggtta tgcaggtacc
     2641 aatatttcct gtactagggt tgattatgac gatggttatt atgcttcagt ttaattatca
     2701 cgtggtatta tctgcagtgg tacctttaat ttcaattatg attctatgtt taattttaac
     2761 aaaaagaaaa attgaccaaa aacaaaagca aaaatctctt aaatcttaaa ttggctttac
     2821 tcttctacta atacacacga atcattttat attaatttag cagtaacttt tccgaaactt
     2881 tcttttctat gtcccttatt gataattata atacatgaat ggtaacaaaa tctcgaggaa
     2941 taattcgttg taattaagat tactttagta tcccagtaaa gtaaaaaatt taaatatgtt
     3001 tataaaaaaa gcgcttgcca aaaaaatggg taagttaata cctactttac tactttactt
     3061 ctactttagt ttctttactt tgtgttggcg ttttcttggg aacttgtata tgtaaaacgc
     3121 cattttccat ttttgcatct attttcgacg gatcaatttc ttctggagtt gaaatacgtc
     3181 ttctcagcga gctatacgat ctttcattgt ataagtaatt ttttcttttt tcttctgtct
     3241 tcttttcttg ctctcctgaa atgtcgatat aatcagtacc tgccttcacg ttaattttgt
     3301 cttttggaat tcctggagct tctagggtaa cttcgtactt gtcgcccaga tcttccatat
     3361 cgcatagggg gaaacgagtt tctgtttcta agtctgataa aagttcattt cgtctgccaa
     3421 ggaagttcca cgttgggaaa tataacctgt cctctatatc cttcctaaag ccttcgaata
     3481 tgtcgtcaaa cgccgtagga aataatgctt ttcttgtaat ttctgactta cctgatgtca
     3541 tgtatgactt ttattggtta atctatttta agcctaggca cgcactgcat tacaaagcat
     3601 actgacgaat ttgatcgcga tatcaaattc attgtttttt cctgcaaaat tgttacttca
     3661 gtcgccaaaa tgaattaagg ctaacactgt gttcaaaaca aatctttcat aagtcgggcg
     3721 ctaggttctc aaacctgtac tgactgaacc gttcataaac ttccttgaaa cttggggaaa
     3781 aattatcacc atagaattct tcaagtagca tcggattttt ttcgatcacc ttgaatatgt
     3841 ctttctgcgt cattatccca atcatttcgt tatttttgtc caccacaaca agtctgcgaa
     3901 tcttcttgtc attcattagc ttaattgcgt catttattga tgcagatggc tctatggtga
     3961 ataaaggctt gctcattact ttccacaatg caaagtgaac tagtaccggg ttaaacttgc
     4021 taagaattct tactacatca cgttcagtga ttatgcccac gggagtgccg tctccggcaa
     4081 tagtaacaac tattacacat ccaatgttgt tctcttgcat tactctacac gcactcataa
     4141 tatttttatc ctcgtttaca gttttaacct tgggattcat caagtcagaa actgatatcg
     4201 ttgtcaggtt catcttacgt ttttgatttg actaatcaat atatattaat gatgacttca
     4261 ttgccatgca gagcattttc ttaaattaac gtattaccag gacagaacaa tgagcatagg
     4321 taacaacgcc cgatgctaca ctgccgacta gcattctctt aaatccggta attccccttg
     4381 ttcctatgac tattaaatcc gcatcatctt tttcagcata ttgcaatatg gtggaaacta
     4441 tagacaaagg tgtggtaatt acatcggtct ttattttttt aatttccaag ccatcttttt
     4501 ttaccttttc taagacccga ttaaaccatt ttctagcctc attttcatat ttcttgaggt
     4561 aactcggcgg aattgcgcca aatataccag acgaatctcc atacctcact tttgatgcca
     4621 ctatcgatat caaagtaatt ttagattgat atcttcttga aatgtcaatc gcgtactctg
     4681 cagctttgaa cgaataatca gaaccatcaa ttggaaccaa tatctttgaa aataggtcct
     4741 tcattgcgta tagctgttta taggcgactt aaataatttg ggttcacttc ttgaaattta
     4801 caattaattg atagaagtcg atttagtcga tgaattggat gtccattagc tttattgtac
     4861 taactgactt gtctgccctt gtgttctcca attgaaatgt gatcctgcat cttattgagc
     4921 cttccttgcg aaatataaca tcagcaatca gggcggtgtt gtctccctga ttgtcttttt
     4981 caattttcag accgtagtct aatccttgat tggccataac tacggaacta agaaaaggtt
     5041 caatttctaa tttgcctgaa aggtactttg atttgctaaa aggttcatga accacagcat
     5101 tatctgaaaa aagactcaaa gtaccttgca cgtctcctga cttaattctt ttaaagtatt
     5161 cacgcactac aaattcggat ttttcgttag ctttcattga ttgctttaac gtattcacct
     5221 taagtactgg attttgaaat gtgtatataa gtgcggcgta tgcaatgcat tacacattca
     5281 ccatcacggt ttaagttaca aattgacttc tgctttcacg gttttatctg ttgcattaat
     5341 ctcagcctta acatttgcca attctgcaaa tatcatgagc aaaagttcct ttgcaaacag
     5401 agaccaagtt tcgcccaagt cgtgctgtat gatgaagaca tgctttcttt cctgctctac
     5461 cctgtggtcc gacgtaattc cagcaacttt catgtacctt cttaggacat ccagtacggt
     5521 ccaaaaactg taatcattcc tcataaacag aactgtatcc ttcatcactt tcaaggcact
     5581 ttctgccgcg tgctttacaa tcttatcttt ataagcctcc aagtctgcta ttttagcttc
     5641 ggctgcaacc tccattgttt gatttattag ggaacacaat attgattttg gaattggtat
     5701 catccccact ttgttttcat atctatccca ttcaatgtat ctcctcagaa cttggtttac
     5761 caatacattc aaagaaatct ctgctccatt tgcctccctt tgtaattcgt ctattaccgt
     5821 tgtatctaac ctgaaagtta tactctttgt ttttttaggg gttgtaacct tttctgggtc
     5881 agacgaattc aaatttcttg aagatatgga atctttttgt acctaatatc tcttccccgc
     5941 gattatttaa tacacgtaat caataattgg ctctgatgaa atagcaatat attgtcaccg
     6001 atcaaacaaa aattagcagt ggcattttca ccgatattga cttaaggtta ataaattaga
     6061 actatggaat aatcactgca cgacattcta tgtttccagc acgcaataag tcaatggcct
     6121 cgttcactct ggagagaggg aacttatgga tttgatgatt gatttttcct tttttggcca
     6181 gttcaataac ttcacgaagc tcattataat ttccccacaa cgaaccgtaa atctggtact
     6241 cttgaatgac tgtctgaaac aacggtgttc tgatttcttt cccaaacaat cccactacaa
     6301 ctattgcacc acttttattc aaaatgtcta gcgccagatt gatagtgctt tctaaaccca
     6361 cggtatcaag tactacgtcg attccttcac catttgttat cttgcgaatc ttatccccga
     6421 cttccgattc ggttagattc agtgaaaaat ctgcacctcc aagttcttta gccatctcta
     6481 gtttgtcgtc gctgcgatcc agagctacaa ctgtcgaacc cgaacctaaa attcttgcat
     6541 attgagtagc gtaaaatccc aatcctccta ttcctattat agcaacgttc ctatttggtc
     6601 caagaatatg ccgaactttt ttaatcgctc gatatggtgt gagccctgca tccgtaagtg
     6661 gggctagctc ttcaggtttt aacaacgtag tctgttcatc gaccctaatt aggaatctat
     6721 aagaaggaac caagacatat tctgaaaagc ctccgtcgta atcggagagc cctggccact
     6781 ttgcagcctg gcacatttgc tcatctcctc ttttacagta aaaacaaaat ccacaacccc
     6841 aaccaccaaa tacggccacc atgtctcctt tcttgatact cttaggaact aaagtccctg
     6901 tttcctcgac ccagcccgct atctcatgac caggagtctt cggcaaattt agtggcaaac
     6961 ttttctgcca atctccattt attagatgta gatcagagtg acacagccca gcagctccaa
     7021 ttttcacgac cacttcttct ggggatgaaa caatcggttt tttaatatcc tcaacttcaa
     7081 gaggaaagcc atacttatga attcttgccg cacacgtact attttctccc gagtttattt
     7141 ttttagctat gtagcgtcac cacgataaat agagtaatag cgcatatatc ttgtgagggt
     7201 acagtgcatt acaataaaaa ttcacttgaa ttaagtgtcg cattaaactg tctattgcta
     7261 ttgcattttt taaggaacaa tggagtacaa aacagcttac gtaatgttct gttagctaaa
     7321 tagtcattac caataaaatc tgttacattt cgcctgaatc tctcttgtca tgttgatact
     7381 aaatcaagga ttatctcgac tgcatcagtt ttatagttat cacgtttgcc attttcttcg
     7441 acggtattaa agatttttac gagaatcgag aaaagttcta caaatgagta atgccatttg
     7501 ccgatactca ctttgccttc atttgttacc cttgatataa aaattactga ttatctttcg
     7561 cgaagcttca aaaaatttgg cagtaacatc caccagggta cctatgaacc ttccttattc
     7621 tttaattctt ttatcaatat tgactgaatt ctggcatcaa gttctccaat ctatactgat
     7681 tgtatttttc gtatatttcc ttaaacccta tagaataacc attgccatag agttctgaaa
     7741 ataaactagg gttcttgtca atagcattga atatgtcctt ttgcgttaat atcccagtca
     7801 ttttattatc tttgtctact actaccaatc tcctgatttt tttgttgttc atgatcttag
     7861 ccgcgtcatt aatggaagca gattgttcga tcgtaattat aggattactc atgagtgttc
     7921 ttagtgacgt ctgaaataaa tcgggattta gtttacctaa aattcggaca atatcacgtt
     7981 cagtaataat acccacaggt gttcggtctt tgttgcgagt aacaactatt acacacccaa
     8041 tatcgttcgc agacataata ttgcatgcac tcataatatt ttgatcctcg aaatcagttt
     8101 gcacttttgg attcattaat tttgaaaccg atacagtttc tgaactcatt taagaatgga
     8161 tagtagttac tgtatttatt tctgatggat tcagtgtaat gcagagcacg aatttaataa
     8221 ttcctttaag ctttagataa gattatttgg taccggcgtt gttgaaagct attgaaaatc
     8281 ctagttcctc atgataaatc atcagtgtct gaaaaggcat taagaaaagc aatcttgttt
     8341 gcaaagaaat tgaattacga aattttatta ctccacataa tagaccttaa gatattacaa
     8401 tctgattcga ttctaaaata cataaacgaa aaagctgcac tagccaaggc taagacacaa
     8461 attttaaaat attcgtatcg ggcgctttta cattatccga atcaaatgaa tatatctata
     8521 tctggttatt tctgatttgc tcaataccct cttcagttat tctgattttt ggtattccgg
     8581 catcgacatt tatgaagcca tctttaacta aacactttac tacgtcatct acttggttct
     8641 tgtctagtaa tcctatttct tctccaattt catatttgtc aatgtaccct atttcattgt
     8701 catcggtttt ttcataaact ttcagcagaa atttaccgat agtttcgtta gacattgtct
     8761 attgaaactc tcctgtaaag tttggcatta tcataatcga gttatgttgg atagcagctg
     8821 caagtttgaa cccactaata tgcaaaggat ttgaatgagg ctttatgttg tgatccatcc
     8881 cttgtccacc atgtatgttc caataaggat taaaataccg actgagatta aaatacctat
     8941 gattcttctg gcgagccaat aggcataaag aattgtgaat gcgtgcgacc ttccttcggt
     9001 cagtgtcaat gatgttgagc catacgatcc gagtagtacg agtacaagca agactccaac
     9061 aatgatgatt gttcctgcca ggctgtaaag gattaccggg ggtaacgcaa gctttctaac
     9121 tttcactttt tcagtattac tcatcacctt taattcagaa caagagaata taatagtaaa
     9181 gagtacagtg caatgcacta aattattgaa atattataga aattgattca aacagactca
     9241 ctggtggaac gagcttctag tacctaaaat tgtttctgca aaattatgtc gaacgttcat
     9301 tggcaacggt gacgaaagta taattttcca ttgtgatttc ttaatgtttt tgtcctaaac
     9361 gaatgtaact caaaatttga caacggaatg tgtagctagc tcgacagtta attctaaatt
     9421 ctgattgtgg actctgaaat tgccttgaat agtacagaat ataatttttt gcaaataaaa
     9481 taaaccaaaa ttctcctctg gtaaaacaaa ttgccaaaga tttctatata taataacaat
     9541 tatggttcat agtaggtcta aatgttaatt agaaagatac tcaccgcact agatggttcc
     9601 gagccttcct ctgacaccaa cattcaccca accgacttgg ccaaaagatt tcaggcaaca
     9661 ttgattgcaa tacacgttac tgacccaaat tataggcatt tggagactgt cctgtcacca
     9721 aggcctggga gattcgaaga aattttgata ttagtaaaac aggaagctta tcggcacttt
     9781 ggtaacgcaa agcaaaatgc tttaattagt ttagctaatc tgggtaacgg aataaattga
     9841 gaatattaat ggtttcaact gaatatcctc ccatgcaagg gggtgtaggt cgatattgta
     9901 aaaatttagt aaactcgtta agaaaagaag gtctagagtt attggtcgtc tgcaatgaat
     9961 gtggagaagg tgattttagt ggaatatccc cttacaatac caacaattct gaagttctct
    10021 taagattagt taaagatgtc caacctgata ttgtacacgt ccaatacgaa caaggattat
    10081 atggcatgca cctaaatgcg ctgcgtcctg aggcaacaac aacaaacata gagcggtttt
    10141 atgattgttg taaggttcct attgttagta ctcttcactc ggcgtatact tttgaccagt
    10201 ggatgaaact aatagtccca ttggagaaca ggatactagg tagatttggc acacttctcg
    10261 gcgtggccta cgactactgg acccatttaa taaattacca atcatttaca tctttggtca
    10321 aacaaaagat cggtcataat agatatggaa tagttttttc taaatatctg gcaaacctta
    10381 ttcctggtgc ccatttaatt tatcatgggg cagagccaag tgctccaaat cctggaagta
    10441 aggaggaggc aagactaaag ttttctcttc ctgaaggagg caaaattgcg cttgcttcag
    10501 gatttgtcac tgcaacaaag ggatgggatc tccttaaaaa gatgaacgtt cctgaaggat
    10561 ggaacatcgt tattaatggt tctaaaaatc attataatat ggaaagacat aaaactaaat
    10621 ttaaacagtc ggagataatt gaacttcagg aagagttcct taatgaggaa caattatcat
    10681 tactttttta cgccgctgat gcagttcttc tgccctataa agtaacttct ggttcaggcg
    10741 ccatgttcga tggctttgct cacggacttc cattcatttc gagcgacatt ccttttttca
    10801 gggaattttc agatatagga ttaggaattt cagtcccccg acatccaaat caattttcca
    10861 gggcactcat tacactagag caaaaactcg atcggtacaa ggacacagtg gaaatgttta
    10921 gcaagaaact cctttgggaa gagatagcag ataagcatat gatgttgtat aatctaattg
    10981 taaatgatcc aaactctcca cttttaaaag aaaatctctt caaatactaa ttcatttttc
    11041 agtatcatac tattcaatac caatagagat ttactcaaga ctttcaatga ttcgattaaa
    11101 aaatctaaaa ataacccaat acctgttcct gataaaacca atgaatggga attaaaagct
    11161 ggattaaatt gtttgctcct gtataatgta aaaaccatat gtgttatcaa agagaaaagt
    11221 tatacatcac attaacattt accaaagtat caagagttga ttacgacatt atcatcgaaa
    11281 ttggacaatg tgctagtaga aaaagtttta gaatttgcaa aggatggagt aaccaagaaa
    11341 gacataatgg aaaaattcaa tttgtcgcga cctatagtta ggaggcttac agcggagctt
    11401 gttggtaaag atttattgag acaacatgtt
//
LOCUS       DASUMD010000050         2023 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_565119, whole genome shotgun sequence.
ACCESSION   DASUMD010000050 DASUMD010000000
VERSION     DASUMD010000050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2023)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2023
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_565119"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..236
                     /locus_tag="VFX26_01305"
     CDS             <1..236
                     /locus_tag="VFX26_01305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573143.1"
                     /translation="ETTIPGGITENSFRPQLYVNITETIETKKNALECFESQFVRCGE
                     IWIPAILGRCSYRGYQINSKYAEAFEVIKVTKW"
     gene            731..1393
                     /locus_tag="VFX26_01310"
     CDS             731..1393
                     /locus_tag="VFX26_01310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HEX5573144.1"
                     /translation="MLDDNQLKGMIKNARDGFEKRNFTQSAELTLILKDIDVKKGFSI
                     NEVVNLPNKTTKTSSICVFASGDMGMRARKAEVDRVIEPEELDRLGTNKKDARKVVKA
                     YDFFLADTSLMSSVGRSLGQFMGPKGKMPSPLAYGAPIENIADRFRGSVRARAKNQLN
                     ISAKIGDEKMQDEQLAGNALAIISAIEKKLPQGDKNIHNAIIKFTMSKPSKASAVAQK
                     QK"
     gene            1406..>2023
                     /gene="rplJ"
                     /locus_tag="VFX26_01315"
     CDS             1406..>2023
                     /gene="rplJ"
                     /locus_tag="VFX26_01315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HEX5573145.1"
                     /translation="MATEKHTRTSYPKGKQDLYQQMLELPKSYNVIALSKVNKVRATQ
                     LMMIRKKFHKDIIIKVIKNRVTQRAFEKISDVKGIDKLSSQLEGQCALMFTNISPFKL
                     NLIFDQNKVFLPAKGGDITKTEILIPSGDTGITPGPVLSEFKEANVPTKIDQGTIWIS
                     KDTIVARPGDLISTKLASLLSKMNIKPIEAGIVVNYALEDKLVFAE"
BASE COUNT          732 a          328 c          414 g          549 t
ORIGIN      
        1 atgaaactac gatacctgga ggaattactg aaaattcatt tagaccacaa ttgtatgtaa
       61 atattactga aactatagaa acaaagaaaa acgctctgga gtgtttcgaa tctcagtttg
      121 ttcgttgtgg agaaatatgg atcccggcaa tccttggcag atgttcttat agaggatatc
      181 aaattaattc aaaatatgct gaggcctttg aagtcataaa agttacaaaa tggtaaatag
      241 atagaacacc tagtggttgt tttttagaat gattttggaa aatatcataa cttaattatt
      301 ttgagaaaag aaggtatttg cgaaacatcg aaaaaatgat tatggtacaa atcggattga
      361 tgtaaaagct ctatttcatg tcttaataaa gaaaacgcta caagttttga acagtttata
      421 agtgaatatt ttatttcctt tttgcaaagg atttgctgta ttaagcaaaa caaatgggct
      481 cgtagctcag cttggataga gcgcctgcct tctaagtctt aacaaagaga gccggaagtc
      541 gagggatcga agccctccgg gcccgtgcta atattcaata tcaatagatt atcaagttaa
      601 taatgtcaac aatagtatta cagggaattt ctcggttgtt aggtcgaatc ctataaacag
      661 tttccataat cagtacgtgt attaacctaa ctcacgttta taagaggctt gaagtgtaaa
      721 attttcaact atgcttgatg ataatcaatt aaaaggtatg ataaaaaatg cccgagatgg
      781 atttgaaaaa cgaaatttca ctcaatctgc cgaattgacc cttatattaa aggacattga
      841 tgtcaaaaag ggttttagca taaatgaagt cgtaaatcta cctaacaaga caaccaagac
      901 ttcaagcata tgtgtatttg catccggaga tatgggaatg agggcaagaa aggctgaagt
      961 agacagagtt attgagcccg aagaattaga cagacttggc acgaataaga aagatgcaag
     1021 aaaggttgtt aaggcctatg actttttttt ggcggatact tcgcttatgt ccagcgtagg
     1081 tcgatcgtta ggacagttca tgggaccaaa gggaaagatg ccatcacctc ttgcttatgg
     1141 agctccgata gagaatattg cagatagatt cagaggatct gttagagcca gggcaaagaa
     1201 tcaactcaac atatctgcca agataggtga cgaaaaaatg caagatgagc agcttgcagg
     1261 taacgcactt gcgataattt ctgcaattga gaaaaaattg ccacaaggtg acaagaatat
     1321 tcacaatgcg ataataaagt ttacaatgag taagccctcc aaggcttcag ctgtggcaca
     1381 gaaacaaaag taggagagat agataatggc tactgaaaaa cacactcgaa caagttatcc
     1441 aaaaggaaaa caggatttgt atcaacagat gcttgaactt ccaaaatctt acaatgtaat
     1501 tgccctttca aaggtcaaca aagtacgggc aactcaattg atgatgataa gaaaaaaatt
     1561 ccacaaagat attatcataa aagtaataaa aaatagggta acacaaaggg cctttgaaaa
     1621 gatatcagat gtcaaaggca tcgataaatt gagttcccag ttagagggac aatgtgcgct
     1681 aatgtttact aatattagtc ccttcaagct aaatcttatt ttcgatcaaa ataaggtatt
     1741 tttgcctgca aaggggggag acatcactaa aaccgaaatt ttgattccgt ctggtgatac
     1801 aggaataacc ccaggtcccg tattatcaga attcaaggaa gcaaatgttc ctacaaagat
     1861 agaccaaggc acaatatgga tcagtaaaga tacaatcgta gcaaggcctg gtgatttaat
     1921 ttctacaaaa cttgcgtcac tgctctcgaa gatgaacata aagcctattg aggcaggcat
     1981 tgtggttaac tatgctcttg aagataaatt agtatttgct gaa
//
LOCUS       DASUMD010000051         3674 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_786382, whole genome shotgun sequence.
ACCESSION   DASUMD010000051 DASUMD010000000
VERSION     DASUMD010000051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3674)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3674)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3674
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_786382"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..596)
                     /locus_tag="VFX26_01320"
     CDS             complement(<1..596)
                     /locus_tag="VFX26_01320"
                     /inference="COORDINATES: protein motif:HMM:NF019313.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-loop NTPase fold protein"
                     /protein_id="HEX5573146.1"
                     /translation="MSTEDELFQRGLILTDDIASDPILDFNLYSNAIVNIVRNSHPKF
                     TIGIFGDWGAGKTTLINSVDKALQTDKDLIRIKLEAWRYKREQFPLVSLLKSIAYALP
                     AEKQFEELKQKLETSAINFLKKTPDILTSIISKYASEEDEISHEMFESFKKELNSKIQ
                     LIAELDRDTVYFDGFEEIKKEIKNLRLNNPAFRIIVFV"
     gene            complement(1014..1352)
                     /locus_tag="VFX26_01325"
     CDS             complement(1014..1352)
                     /locus_tag="VFX26_01325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573147.1"
                     /translation="MDMDNLTNRWLATLGIGALIFGLALFVLRVPVRTMLIFFAIGIP
                     VVFLWLYADERSRREKKEMEQLGKIQEQRCICSVCKHEQAVVCMDQKCPCCIILKGDS
                     IIGHSINPLQ"
     gene            complement(1366..1677)
                     /locus_tag="VFX26_01330"
     CDS             complement(1366..1677)
                     /locus_tag="VFX26_01330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573148.1"
                     /translation="MNYSSEMSEFAFFRFKSANMLTDDEEQHREEIISLTEQVLDSRG
                     IECDARIAKISEDQLRDILEEVRRLRRKKKKNYLLSDDIKLNEEHKDIENDEGQATYI
                     R"
     gene            complement(1902..2315)
                     /locus_tag="VFX26_01335"
     CDS             complement(1902..2315)
                     /locus_tag="VFX26_01335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX5573149.1"
                     /translation="MFKRLGAAILLVEDLQKSIAFYRDTLELKIKNQSPDWVEFQNEG
                     QGAVLALHPARIKQKGFSNMLVGFNVSNLESVCKKLEDKHVKFHKKIAQESFGKHAII
                     EDPEGHLISIVEIPPKDELGQIPYYHGFAPVEGLM"
     gene            complement(2958..3266)
                     /locus_tag="VFX26_01340"
     CDS             complement(2958..3266)
                     /locus_tag="VFX26_01340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MTH1187 family thiamine-binding protein"
                     /protein_id="HEX5573150.1"
                     /translation="MITAEISLVPVGSRSGTSMSKEIALAFDAISGIKDLKATLTPLG
                     TQIQSDSMVDILNAINIAHEAVKSSGIQRIISIVHIDERLDKEQNLDQKVDSVMNKLK
                     "
     gene            complement(3452..>3674)
                     /locus_tag="VFX26_01345"
     CDS             complement(3452..>3674)
                     /locus_tag="VFX26_01345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573151.1"
                     /translation="GIMKIYTPNGTLIKTTSIPNGFKADKNGFQQFVTSLPNSTIQSI
                     TTVVLFTDMNKTAPLSNSITNNLVLNKTQ"
BASE COUNT         1141 a          648 c          578 g         1307 t
ORIGIN      
        1 tcgacaaata caataatcct gaacgcagga ttatttagac ggagattctt tatttccttt
       61 ttgatttcct caaaaccatc aaagtagact gtgtccctat ccaattctgc aattagttgg
      121 atctttgagt ttaattcttt cttaaaagat tcaaacattt cgtgcgaaat ttcatcctct
      181 tctgatgcgt acttcgagat aattgatgta aggatatccg gagtcttctt gagaaaattt
      241 attgcacttg tttctaactt ctgttttaac tcttcaaatt gtttctcagc cggtaacgcg
      301 tatgctatac ttttcaacaa tgaaaccagc ggaaattgtt cccgtttgta acgccatgcc
      361 tcgagtttta ttctgatcaa atccttatca gtttgaaggg ctttgtcaac agaatttatc
      421 aaagtagtct tgcctgctcc ccaatcacca aaaattccga tagtaaattt tggatgagag
      481 tttcttacta tgttgactat agcattagaa tataaattga aatcaagaat cggatcactc
      541 gcgatgtcat ccgttaagat taatcctctt tgaaatagtt catcctctgt ggacaaaatc
      601 acatcttact ttaaacttaa ttcattttta agtatttgtt gctaaagatg ttaatgtaaa
      661 tgtattattt tgaaatttag tcaatatgac catcatgatt atgtgttaat aagaaattaa
      721 atattaagta attaaccaac aagtaagatt ccaagtattc atttctagag ttgcattagc
      781 cagaatttat tgcaatttat ctcctggacc tgctgtttat tttttgctta gagacagttc
      841 agatttttta ctaaattttt atgtctgtaa tctttcaacg aatcaaggat aattaccaaa
      901 ataaagactt ttagcagaat ttctaaactc ctattgagat tgtgcttaac taaataatga
      961 tactttaaaa gagaaatatt attcaatagt aacattgtaa taatactata gtactattga
     1021 agagggttga ttgaatgtcc tataatacta tcacctttca aaataatgca acacggacac
     1081 ttttgatcca tacagactac tgcttgttca tgtttacaaa cagagcagat acagcgttgt
     1141 tcttgtatct tgcccaactg ttccatttct ttcttttctc tgcgagacct ttcatcagca
     1201 tatagccata ggaaaactac aggtattccg atagcaaaga aaatgagcat agtacgtacg
     1261 ggaactcgta aaacaaataa tgccaaaccg aaaatcaagg ctcctatacc taaagttgca
     1321 agccagcgat ttgtgagatt atccatatcc actttcagtc accttctacc taatgtaggt
     1381 agcttgcccc tcatcatttt caatatcttt atgttcttca tttaatttaa tatcatctga
     1441 taggaggtaa ttctttttct ttttccttcg aagtcttctc acttcttcaa gtatgtctct
     1501 caattgatcc tcagagatct tggcaatcct agcatcacat tctatgcctc tcgaatcaag
     1561 aacctgttct gttagactaa tgatttcttc tctatgttgt tcttcatcat cagttaacat
     1621 gttggcgctt ttgaatcgga aaaaggcaaa ttcgctcatc tcactactat aattcaacaa
     1681 acttgttatt ataattgatt gcgctagttc gagtccaatg agtattgcga agagatatta
     1741 ttaataaaat acacgtcaag ctactttttt ggtattcgtt tccttttcag cttagggttt
     1801 caaacatcca gttcctctta taggtttcat ctagaagatt gaatctacta aatagattaa
     1861 agtatgagtt gacagagaag atattgctaa aattcgtaac attacatcaa gccttctaca
     1921 ggagcaaatc catgataata cggaatttga cccagctcat cctttggtgg aatctctaca
     1981 attgatatta gatgaccctc aggatcctcg ataattgcat gctttccaaa agattcttgg
     2041 gcaatcttct tatgaaattt gacgtgctta tcttctagct ttttacaaac agattccaag
     2101 ttactgacat tgaatccaac tagcatgttt gaaaatcctt tctgttttat gcgtgcagga
     2161 tgtaatgcta atacagcacc ttgaccctca ttttgaaatt caacccaatc aggtgactgg
     2221 ttctttattt tcaattcaag agtatctctg tagaacgcta tacttttttg taaatcctca
     2281 actaaaagaa tggcggcacc tagtcgcttg aacattcact tcttcttatt tctttggact
     2341 taaatttgat tcggttcaca atcatcagtc atagaatatt ttgatattga cgtatgctaa
     2401 aatagattaa aaattacatt tgataaattc tagtggaaac cataattgca ggcgtacatc
     2461 aaaatatcca tactactaca gtagacttct taacctgtaa gagtgtataa agaagagaaa
     2521 caatctctca gaatggtaat taaatgtaat tgtagaacaa aacatgattt tggaaatggt
     2581 attatgtcat gttgttttaa ataaagtatg cttagttatt gcgagcactt tgtcaatgta
     2641 attggtgaag cagaagaggc gatatgtgat tatcgtacct gtcgccataa gctctctgaa
     2701 catggcccct caagtcgtat ttgtaggtgc tctcacccga gtaataaggc gattggacta
     2761 aattttccat agcttgtttc gttaaattta tctttgttct attggtaatt gatccataat
     2821 caaaggacta acaagtcagg cgcaggtaat acacaagtaa taatccgtta aggtaaacaa
     2881 atgtactaaa tgatactctg ttgacttaaa taagtaatta attaatcagg atatcttata
     2941 acagaattat aatgtcctca cttcaatttg ttcatgacag aatcaacctt ctgatcaaga
     3001 ttttgttcct tatctaatct ttcatcaata tgcacaatag atattattct ctggattccc
     3061 gaagacttga cagcttcatg ggcaatattt atcgcattca gaatgtccac catactatcc
     3121 gattgaattt gagttccaag tggggtaagg gttgctttca ggtctttgat tccactaatt
     3181 gcatcaaagg ctagtgctat ttccttactc atacttgttc ctgaacgaga tcctacagga
     3241 actagactta tttctgcggt aatcatctat aaattcactt tcagaaagaa attatttaag
     3301 tactactaat tatcgaatcc cgtttgatag aaaagaaaaa taaatatctc taattgaaga
     3361 cattttttga gacaatcagt tattggtatt catttctttc tatttttatt acaacttttg
     3421 attgatggaa aattgaggtg tattatgtgt attattgggt tttatttaga actaaattgt
     3481 ttgttatgga atttgataat ggagcagtct tgttcatgtc tgtaaataat acaacggtag
     3541 ttatagattg aatcgtacta tttggtaaac tggtaacaaa ttgctgaaag ccatttttat
     3601 ctgctttgaa tccatttgga atagatgtcg ttttaattaa tgtaccattc ggcgtatata
     3661 ttttcatgat tcca
//
LOCUS       DASUMD010000052         2813 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_454803, whole genome shotgun sequence.
ACCESSION   DASUMD010000052 DASUMD010000000
VERSION     DASUMD010000052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2813)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2813)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2813
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_454803"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..262)
                     /locus_tag="VFX26_01350"
     CDS             complement(<1..262)
                     /locus_tag="VFX26_01350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573152.1"
                     /translation="MLVLNRARLNNENTSIEINYNMAVICKKCGLPNDLCACGELDKE
                     ETRIVIRLETRRFSKTTTMIEGIDPKLSDIQHIVKELKSKLAC"
     gene            370..732
                     /locus_tag="VFX26_01355"
     CDS             370..732
                     /locus_tag="VFX26_01355"
                     /inference="COORDINATES: protein motif:HMM:NF018392.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autoantigen p27 domain-containing protein"
                     /protein_id="HEX5573153.1"
                     /translation="MPVPDDKYRENLKNAAEFLLKGGTLLSEPCEKCSGIQVKKNDEI
                     KCIICGNTISPVDNKSKEIEKAVEFDCKNKMVEKIGKRLQELLTGIGSDKNLAEEEQR
                     LRVIDAYFIILEKIKILN"
     gene            808..978
                     /locus_tag="VFX26_01360"
     CDS             808..978
                     /locus_tag="VFX26_01360"
                     /inference="COORDINATES: protein motif:HMM:NF015846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit Sec61beta"
                     /protein_id="HEX5573154.1"
                     /translation="MGEGKKKNAPLPASSAGLLRFFEDETRGVKVKPEVILGITGALI
                     GISIIIRIAFPV"
     gene            999..2741
                     /locus_tag="VFX26_01365"
     CDS             999..2741
                     /locus_tag="VFX26_01365"
                     /inference="COORDINATES: protein motif:HMM:NF021370.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2070 family protein"
                     /protein_id="HEX5573155.1"
                     /translation="MISEDSVTDIHRRWYFTLLNPSSYKTSAVIAIIASMAIIGINHV
                     SYTFAELTIHSILAVGITTVGFYLDLFLLRGTPTNKISKVIHVAAFSSSFWLVTILLG
                     LLTNSIFGKNSDFVTYCLAGLFVASGLRYGIFVSVFGSRMLRSILIAFVLPVIFFTNI
                     LPYSYSFILQENLSVLIMGSTIFTIGVVWSILADRAGYPYLKSTFSVLQAFLSAWTEN
                     KQEKMEEIFESRSSVDEIRTRLMKFEREGDKQVFVVLPDIHPGPFNPIGGSNLPQKLF
                     NFFENNAIVLHSISDHSKNLPTTAEVNKYLDSLKNSVLKNSGNECTLPLITKSNDFTL
                     TCIGFKTNVLMIISKDSGMEDLPYAIIEKIEQFAKELGFSDIMIVDAHNALGNKISKE
                     EETALTALALTSLEKLEGKQYYSYEIGYSNSLTSGFRIIELGGAGIGVLNLRINNKDH
                     LIGWSDSNNLVNGLRLRILRELNKAGINMLEICSSDTHSSSGKRTRQGYYALGNVTND
                     KDIIRAFSEISSKSMSKTTPSSFSYMDSYSQIKLMGRDQFENYATALNRSMNITKVSL
                     IITVIFYITMLIIS"
BASE COUNT          952 a          429 c          510 g          922 t
ORIGIN      
        1 cgcatgctaa tttacttttc aattctttta ctatgtgttg tatgtcgctc aactttggat
       61 caataccttc aatcatagta gtagttttgg aaaatcttct tgtttcaagt cttataacaa
      121 ttctggtttc ttctttatcc agctcgccac atgcgcagag atcgtttggg agtccacatt
      181 ttttgcatat caccgccata ttataattaa tttcaattga agtattctca ttattaagcc
      241 ttgcccgatt cagtacaagc aacaagattc ataattgagt cgttattatc aaaataataa
      301 tcgcagaatt attattacaa atagcataga atactttaat ttacatgatg gcaagatcaa
      361 atgcacaaga tgccagtacc tgatgataag tatagagaaa acctgaaaaa tgctgctgaa
      421 ttcttgctca agggaggaac tcttctttct gaaccatgtg agaaatgtag tggtatacaa
      481 gttaaaaaaa acgatgaaat caaatgtatt atttgtggga acacgatttc gccagtcgac
      541 aataaatcaa aagaaattga gaaagctgtt gagtttgatt gtaaaaataa aatggtcgaa
      601 aaaataggaa aaagacttca ggagttatta actggtatag gttcagataa aaatttagct
      661 gaggaggaac aaagattgag agtcatagat gcctacttta ttattttaga aaaaattaaa
      721 atattaaatt gaatattaag attctctaat ttaaagtaca aataaaacgg aatgtattta
      781 agacatgatt catcatgaac ttttacattg ggtgaaggaa agaaaaagaa tgcaccattg
      841 cctgcatcga gcgcaggatt attaagattt ttcgaggatg aaactcgtgg tgtaaaagta
      901 aaaccagaag ttatactagg tattactggt gctctcatag gaatttcaat aattataaga
      961 atcgcttttc cagtatagaa taccatcagt aacattaatt gataagtgaa gacagtgtaa
     1021 ctgacattca taggaggtgg tattttacac tcttaaatcc atcttcatac aagacgtcgg
     1081 cagttatcgc gataattgca tcaatggcaa taataggtat taatcatgtt tcatacactt
     1141 ttgcagaatt aacaatacat tctattttag cagttggcat aactactgtt ggattttatc
     1201 tagatttatt ccttcttagg ggaacgccaa caaataagat ctcaaaagtg atccatgttg
     1261 cagctttttc aagctcattt tggctagtaa caattttgtt gggattattg acaaatagta
     1321 tctttggtaa aaattcagat tttgttactt actgtcttgc tggattgttc gtcgcaagtg
     1381 gtctccgcta tggtatcttt gtttcagttt ttggatcaag aatgcttaga tcaatactaa
     1441 ttgcatttgt tttacctgtt atctttttta caaatatact accctattct tattcattta
     1501 ttctgcaaga gaatcttagc gtgttgatta tgggttcaac aatatttacg ataggggttg
     1561 tatggtctat attggctgac agagccggat atccatattt gaaaagcact tttagtgtat
     1621 tacaggcttt tctatctgca tggacagaaa ataagcaaga aaagatggaa gaaatatttg
     1681 agtcaagatc aagtgtagat gaaattagaa ccagattgat gaagtttgaa agggaaggag
     1741 ataaacaagt atttgttgtt ttacctgaca tacatccagg cccatttaat ccaataggtg
     1801 ggagcaatct tccccaaaag cttttcaatt tctttgaaaa taatgcaata gtgttacaca
     1861 gtatttctga ccattctaaa aatttgccta caacagctga agtcaacaaa tatcttgatt
     1921 cattaaaaaa ctcggtattg aaaaacagcg gtaatgaatg tacattgccc ttaatcacaa
     1981 aatcaaatga tttcacatta acatgtattg gttttaaaac taacgtactt atgattattt
     2041 caaaggacag cgggatggag gatcttccat acgcgattat agaaaaaata gaacaatttg
     2101 ccaaagagct aggattttct gacataatga ttgttgatgc gcataatgca ctgggaaata
     2161 aaatatcaaa agaagaggaa acagctctta ctgctcttgc cttaacttca ttagaaaagt
     2221 tggaaggaaa acaatattac tcgtacgaaa ttggatattc aaactcattg acttcggggt
     2281 tcaggattat tgaacttggc ggagctggaa tcggtgttct taatcttcgt atcaataata
     2341 aggatcatct tattggatgg tcagattcaa ataatcttgt caatgggtta cgattacgaa
     2401 ttctccgtga actaaataag gcaggaatca acatgttgga aatatgctca tcggatacac
     2461 attctagttc ggggaaaaga actcgtcagg gatattatgc attggggaat gttactaatg
     2521 acaaggatat aatcagggcc tttagtgaga tatctagtaa gtcgatgtcc aagaccactc
     2581 cttcgagctt ttcatatatg gattcatatt cacaaataaa attaatgggg cgagatcaat
     2641 tcgaaaatta tgcaactgca ttgaatagat cgatgaatat cacaaaggtt tcacttataa
     2701 tcacagtgat tttttacatc acgatgttaa ttatttcgtg ataatagtat ctcgtattga
     2761 atattaatgc tattttttct tcaatcgttc tctttttttg ataacactct ggt
//
LOCUS       DASUMD010000053         4265 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1228694, whole genome shotgun sequence.
ACCESSION   DASUMD010000053 DASUMD010000000
VERSION     DASUMD010000053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4265)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4265)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4265
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1228694"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(22..639)
                     /locus_tag="VFX26_01370"
     CDS             complement(22..639)
                     /locus_tag="VFX26_01370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573156.1"
                     /translation="MPNQIEYVYNIEQMKGHLEQAVENKENGNNSLTQAHILHPIVEI
                     YDFIEAPLVTVDSNLNHSLYTSLNELSQNVEKLDLSQFKGEANKANQMLNNAIELIVP
                     QVNSTLNLIVASWLLDVANTEYESGVRDGKVAEIVEYQDASGFISRAESLVNDSLPIL
                     DQSMKASADEVLSLISPLKLKVQSKADIRTSISEITQKISNMTGI"
     gene            complement(958..1380)
                     /locus_tag="VFX26_01375"
     CDS             complement(958..1380)
                     /locus_tag="VFX26_01375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573157.1"
                     /translation="MSSRLVILSLSISLLLNYGFGIIDFTSGQINTTQQLQQLQMNQN
                     DIDFTSGQVNASQIQGNGSAGNLSSACDTSYPDFCVTTYSANLTCMDIPHRNFTVLGP
                     DTYGLDSDGDGLGCENSNVAYVNSNVTNKSSNLNTTLP"
     gene            complement(1733..2218)
                     /locus_tag="VFX26_01380"
     CDS             complement(1733..2218)
                     /locus_tag="VFX26_01380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573158.1"
                     /translation="MELIILSSLIFSIVAMGLSLARIVRSYREGKRKRQSDLFSNVTN
                     ITRIIEDEKFVQSRRALRKNKLLNQLREGNENDNLVFELDMATEDAARNVASTYDRLG
                     FILKHDKELEDEFIQWQSYVIADMWLLTKELVIKKWRSKNQSYLKEFERIGKKALDIE
                     T"
     gene            2391..3290
                     /locus_tag="VFX26_01385"
     CDS             2391..3290
                     /locus_tag="VFX26_01385"
                     /inference="COORDINATES: protein motif:HMM:NF019846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEX5573159.1"
                     /translation="MLTINPIDATLWTLRRNEIDVIKLYDSLSPIMQAATGATMLNFG
                     YWQGDVNSPVRAQSNLCTLVGNLADLRSSRTLIDVGSGYGAPALEWSREYRLGNIVCV
                     NINSHQLANEFKLALNKIENAQAFHTRCLRAGITCINSTSLCLPFATGTVDRIIALES
                     AQHFKPFDGFIAESYRILNPKGIMVVAMPVIVSLDNVLKKLFKLGILNLTWSSEHYGL
                     EYVKSAIRKCRFKITNEIMIGKQVYEPLALYYIQNRKDLRQKITAHYPSYIEKILCKS
                     LVKMMTVSKKGLIDYIVLKAEKL"
     gene            3978..>4265
                     /locus_tag="VFX26_01390"
     CDS             3978..>4265
                     /locus_tag="VFX26_01390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573160.1"
                     /translation="MSQYATLYRALEYNMLSYLKQNSFPLRDWHVKHMEQTVVRFVRG
                     LSENATRWEIRLNNKYGKIGKVLKRIEYDIKHGVTNEEVFSFLQLMRTDSIY"
BASE COUNT         1373 a          731 c          731 g         1430 t
ORIGIN      
        1 gcttactgtc tcttctggtt actagatccc agtcatatta gatatttttt gcgttatctc
       61 actgattgat gtccggatat cggccttact ttgaaccttc aatttcagag gtgagatcaa
      121 gctcaggact tcatctgctg aagctttcat tgattgatct agaatgggca atgagtcatt
      181 aaccaaggac tctgctcttg atataaaacc acttgcatcc tgatattcaa ctatttcagc
      241 caccttccca tctctcacac ctgactcata ttctgtattt gcaacgtcaa gtagccatga
      301 ggctactatc aggttcaggg tactattaac ttgtggaaca attagttcaa tcgcattgtt
      361 tagcatttga ttggctttat ttgcttctcc cttaaattga gacaagtcta atttttctac
      421 attttgtgac agctcattca atgaagtata tagggagtga ttaagattac tatcaacggt
      481 aacaagagga gcttctataa aatcatatat ttctactatg ggatgtagaa tatgtgcctg
      541 tgttaatgaa ttgtttccat tctctttgtt ttcaacggcc tgttcaaggt gacctttcat
      601 ctgttcaata ttatacacat attctatttg gttgggcatt tgacccgcga ccgaattaaa
      661 tggtgagaat tgtacgacta caaccagaag tacaacattg cacgacagaa caaatagatt
      721 aaattttgta atatttgagt taaaacttct caatgatgac cgactatgta aaaggagagg
      781 ctaatttaag gcttttccag attttcaaat tagagaaaat aattcttaaa atttaaacaa
      841 ttaacctgca aaataaatag tttatgaatg aataacaaga tgtgattttt tttactgttt
      901 ctttactcta cactttttac caattttaat atcatttagt gactcaggag gcaatggtta
      961 gggaagagtt gtattaaggt tactcgattt gtttgtgaca ttagaattca cgtaggcaac
     1021 attagaattt tcacaaccca ggccgtcacc atcagaatct aatccataag tgtctggtcc
     1081 caatactgta aaatttctgt gggggatatc catacaagtc aagtttgcag aatacgtggt
     1141 aacacaaaaa tctggatatg aagtgtcaca ggcactgctc aaattaccag ctgatccatt
     1201 accctgtatc tggcttgcat ttacttgacc actagtaaaa tcaatatcat tctgattcat
     1261 ctgtagttgc tgcagctgct gtgtggtgtt gatttgacca ctagtaaaat ctataattcc
     1321 aaagccataa ttaagtagca aagagattga taacgacaag ataactagcc ttgaactcat
     1381 aaatatctta gtttcgccta gatatttaag tgagctgata gccgtttcca taaaattgtc
     1441 acatttaaat tcatcaggta cacgtttctc ggtacctgtt tatttcttgc tttatcatta
     1501 tgtagaaatg ccatcgatta gaatgaatgg taaagttatt ttgatgtaat gaattagaga
     1561 attgctgtaa agtaactcta gctaaataat ctctgattta atgaacttaa gataatccta
     1621 catattaatt cgcatgatgt aaaacagata aaatagggct ttacagacat tataacattc
     1681 aagaaagatc acatacatta tgacgttcaa gaaagatcat ttcatgattt acttatgtct
     1741 caatatctaa tgcttttttg cctattcgtt caaattcctt caaataggat tggttttttg
     1801 accgccactt tttgattacg agctcttttg ttagtaacca catatctgca ataacatagc
     1861 tctgccactg gataaattca tcttccaatt ctttatcatg ttttaatata aaacctagtc
     1921 tatcgtaagt agatgctaca tttctagctg catcttctgt tgccatatca agctcaaaaa
     1981 ctaaattatc gttttcatta ccttccctta actgatttag gagtttattt tttctgagcg
     2041 cccttctaga ttgaacaaat ttttcatctt ctattattct ggtgatattt gtaacattcg
     2101 aaaaaagatc agattgtctc ttgcgtttgc cttctctata tgatcttact attctagcca
     2161 gtgacaatcc cattgcaact atagaaaaaa ttaatgaaga tagtataata agttccaact
     2221 gattatgtgt attatataca taatatcatg taattaaact taatttattc aaataaatct
     2281 gtcaactaca gttactattg acgataaaaa attcggatgt tcctgtttcc aatacatctg
     2341 atagatattg cattaattaa ttaaaggctt ttgtaagaat aatttgtcga ttgctcacca
     2401 ttaatccaat tgatgcgacc ctatggacac tgagacgaaa cgagatagat gtaatcaagc
     2461 tatatgattc cttatcacct ataatgcaag ctgccactgg cgctactatg ctcaattttg
     2521 gatattggca aggagacgta aacagtcccg ttagggccca atctaattta tgtaccctcg
     2581 taggaaatct cgcagacctt cgctcttcta gaactctcat tgatgttgga agcggttacg
     2641 gagcacctgc tcttgaatgg agtagagaat atagactggg gaatatagtc tgtgtgaata
     2701 ttaattctca tcagctggct aatgaattca agctcgcctt aaataagatt gaaaatgcac
     2761 aagcatttca tactcgctgt ctacgagccg gtattacttg cattaatagc acttctttat
     2821 gcttgccttt cgcaactggt actgttgaca gaatcattgc attagaatct gcccaacatt
     2881 tcaaaccttt tgacggcttt attgccgaaa gttacagaat attgaatccc aaaggcataa
     2941 tggtagtagc catgcctgtg atagtttcgt tagataatgt cttgaaaaaa ctgtttaagc
     3001 taggaattct caacctgact tggtcatcag agcattatgg attagaatat gtcaagtcag
     3061 ctattagaaa atgcagattc aaaataacga atgaaattat gattggtaaa caagtatatg
     3121 aaccacttgc tctttactat attcaaaaca ggaaagacct acggcagaaa attacggcac
     3181 actatccatc atatattgag aagatccttt gtaaatcatt agtcaagatg atgactgtat
     3241 ctaaaaaagg attaatagat tatattgttt taaaagctga aaaactgtaa aatgcgcctt
     3301 tattgcttca tatggaaaaa atcttatgtt atactattta attgaaaaaa gttagagaaa
     3361 ttttgcataa ttatagtatt acaaatgcta gggcttacga agctcgagta ttttcatttt
     3421 ttgggaaata ggatgttatt gtatttttat tcaatttaat tctcaagggt tcatcggctt
     3481 tagttccctt tacctagtag ggttctactt tcttgcacat attagtgata aatgcttaac
     3541 cactatgggt gcaccggttt agcttggtta ctaattttaa cttctaaatg aaagaaagca
     3601 gctacggttt acttatattg ggctctgaat atatcataat tatgatattt tcggatgaac
     3661 acataattcg atgtagtgag tgtggaagaa atttgatagt taaagatact gtaaataacg
     3721 ggatagcatt ccttagccac ctagagttag atcatggaat aacctatgta gctcaacgaa
     3781 tgacaatgac caagaccaaa agtagaactg agtcgcgaca acaattacga taagctgata
     3841 tttatctcat actcaaagtt ttttaggatt cgtaaattac cataaattgt aatgatgttg
     3901 acaagacgtt cccaaaaatc ataaccaaga aacaaacttg attcaattct tccaaaccga
     3961 ggatgatctc aactcacatg agtcaatacg ctacattata tagggcatta gagtataata
     4021 tgttgagtta tttgaagcaa aatagtttcc ctttgcgcga ttggcatgtt aaacatatgg
     4081 aacagacagt tgttagattt gtgagaggtt tatctgaaaa tgcgacgcga tgggagatta
     4141 gattgaataa caagtatggg aaaataggca aagtacttaa aagaattgaa tatgacataa
     4201 agcatggtgt tacgaatgag gaagtctttt catttttgca attaatgagg accgattcca
     4261 tttac
//
LOCUS       DASUMD010000054         6448 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_233871, whole genome shotgun sequence.
ACCESSION   DASUMD010000054 DASUMD010000000
VERSION     DASUMD010000054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6448)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6448)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6448
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_233871"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            105..764
                     /locus_tag="VFX26_01395"
     CDS             105..764
                     /locus_tag="VFX26_01395"
                     /inference="COORDINATES: protein motif:HMM:NF019429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfuA-like protein"
                     /protein_id="HEX5573161.1"
                     /translation="MSKPIVYLGPTLRREEAIKILDADYRDPAKKGDFLMLSQDSDEK
                     KYVGFIDGVFLHDYPPPPIEVYHLATRKNVELIGASSLGALRAVELEKFGMKGIGKIF
                     QLYKNGIIDADDEVAVTFVRENNILQSEAMIDIRFNLFLAYKKGIITNQTKKRIAKIA
                     KNIYFPFRNYEDIIKLTQQQLPSIYDELEGFRSYILKNRDSLKARDAIKLLKYLKTMS
                     E"
     gene            complement(799..1662)
                     /locus_tag="VFX26_01400"
     CDS             complement(799..1662)
                     /locus_tag="VFX26_01400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEX5573162.1"
                     /translation="MCSLKYTSKEKKTKSILSKNHTFNNLQGVITSADILRTLIRKNS
                     VRVVDVRKEEEYKKEHIKTAVSIPLAKVLDNDSPERIVQLLEQTGISDKTPVVVYDDT
                     FGALAARVAWTFQYVGHSNTSLLETTFAKWKSYGFETEKKVNVFPHAKHSLKVNNEIF
                     ANYDEVEKAKSEQNRILIDSRERLNFLSEHIPGATNLPYTMLGTADSILREPQEIKRF
                     MENRGISTNDEVITYCGSVGTLSGLAYYALRIGGVKKIRLYSRSFKEWKKLGKPIEEF
                     KDANFWDLSAE"
     gene            complement(1650..3479)
                     /locus_tag="VFX26_01405"
     CDS             complement(1650..3479)
                     /locus_tag="VFX26_01405"
                     /EC_number="1.8.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0050311 - sulfite reductase (ferredoxin)
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite/sulfite reductase"
                     /protein_id="HEX5573163.1"
                     /translation="MKREVLNYTDKKHFSPKSNPRWGKEEETEIFGQNVKLFRKGKMS
                     EDDFRRFRLQHGAYGSRLQQNYSMIRIKIPSGEITPEQLEKIASMSEAFSIGSAHVST
                     RQNIQLHWVQLEDVSEVMRGLVEVGLTTREACGNTIRNVMCSHFAGVCPDEEFDSTPY
                     SKAIARFFLRNPVCQNLPRKFKINFACCSNHGLVRIADIGLIPMKKDEANGFKIYLGG
                     GLGAASFIGHQLEEFTPEDRVVSTCMAVVRLFDRLGNRENMARNRMRYLVNEMGWEKF
                     QKLVIKERSNVEMTISLETLNRYKVDFEGTSIRQLSNGKKLPLINEKVDINSDPYKRW
                     IHSNVVSQKQNGYFVVFVTLGAGDITSNQLRSLAKTIQNYSGEGCARNTPNQNFAVRF
                     VKARDLPEFYNDLAKIGLANPGALTMSSAVGCSGTTSCNLAITNSHRLAKEIQSKFIE
                     LGLDTEDDLRDSTIKISGCPNSCGQHEIATIGFYGGASRIEGTMTPTYTMMFGGRDGE
                     DGMLGRTVMRVPAKRVISTIIKIIEIYRKERSANESLTRWIGKLINGAINDNGEIKNL
                     DDIKTALMQTISLPSPSDDPESYMDYGNDIKFSAKTAKGECAA"
     gene            complement(3718..3792)
                     /locus_tag="VFX26_01410"
     tRNA            complement(3718..3792)
                     /locus_tag="VFX26_01410"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3755..3757),aa:Val,seq:cac)
     gene            complement(3871..5121)
                     /locus_tag="VFX26_01415"
     CDS             complement(3871..5121)
                     /locus_tag="VFX26_01415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004013 - adenosylhomocysteinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylhomocysteinase"
                     /protein_id="HEX5573164.1"
                     /translation="MKYRIKDPNLAEEGKKKIDWAEVHMPVLSNLKKKFKLNSPLKGV
                     KIAGCLHVTKETGVLIRTLRDLGADLAWCGCNPLSTQDDVAAALVHEGISVFASRGVS
                     NEQYYDDIHATMALNPNVTIDDGADLTVEMHNSAGNMSEIYGGTEETTTGVIRLRAME
                     KNGKLKYPIMAVNDAETKHDFDNVYGTGQSALDGIIRATNILISGKNVVVSGYGHVGK
                     GIAKRAAGLGGNVIITEIDPIAALKAKLDGYSVLPMQSAAASGDLFITTTGCKDVIRE
                     EHFLKMKDGSILANAGHFNVEISVDALKSNSKLVKQINENTTEYELKKGNKIYLIGEG
                     RLVNLVAAEGHPSEVMDMSFSNQLLSAIKLIQSKGSLSPAVYDIERSQDQEIAKAKLE
                     SMDINIDALTEEQQTYLTGFSEGT"
     gene            5326..5844
                     /locus_tag="VFX26_01420"
     CDS             5326..5844
                     /locus_tag="VFX26_01420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00725 family protein"
                     /protein_id="HEX5573165.1"
                     /translation="MRRLQIAVIGYNQDKSSEKTNHIAYQVGTEIAKANAILICGGLG
                     GVMEYACKGAKEHGGLTVGIIPQEEAQFANRFCDVVIATGIGYARDFVVATSADGIIA
                     VGGGVGTLIELCVGYMLKKILVTIPSSGGTAENFGGRYLDDRKRVFIQTSQDAYSAVK
                     VISDYFGSQQEP"
     gene            complement(5875..>6448)
                     /locus_tag="VFX26_01425"
     CDS             complement(5875..>6448)
                     /locus_tag="VFX26_01425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_process: GO:0006631 - fatty acid metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase family protein"
                     /protein_id="HEX5573166.1"
                     /translation="VNRIFIPLVHEAAYCLENDSKSMTQIDSAVKFKMYLPMGIFELA
                     DYTGLDVIHRATIEMYSRDKKVVNPHPKIEQLFSSGKYGKKSGEGFYSYGDKNYERVP
                     LSEEEAKQYDPIRILSVAINNAAWLISNGVCTREDVELAMRLGMGLRKELFEIGKESG
                     FEKIISTLNQLEGTNGSFYTPDPYLKTITT"
BASE COUNT         1893 a         1296 c         1120 g         2139 t
ORIGIN      
        1 ccacaaataa tgatacctgt agtaagaaca atagtacctg ggttagaaac attcaaaatc
       61 acaaaggctg tgatcggaaa aagaggaagg gagtctttta aaacatgagc aaaccaatag
      121 tatatcttgg acctacacta agaagagaag aagcaattaa gattttagac gctgattata
      181 gagaccctgc aaagaaagga gattttttga tgttatctca ggattcggac gaaaaaaaat
      241 atgttgggtt tatagatgga gtttttctgc atgactatcc tccgccacca attgaggtat
      301 atcatctcgc gacaagaaaa aatgtcgagc taataggtgc atctagtcta ggtgcattaa
      361 gagccgttga gttagaaaag tttggaatga aaggtatcgg aaagattttt caattgtata
      421 aaaatggaat cattgacgct gatgatgaag tagcagtcac cttcgttcga gaaaacaata
      481 tcttgcagtc cgaggcaatg atcgatatca ggttcaattt atttttagcg tataaaaaag
      541 ggataattac gaatcagacg aaaaaaagaa ttgcaaagat tgcaaaaaac atttactttc
      601 catttagaaa ttatgaagat atcataaagt tgacccaaca acagttgcct tcaatttatg
      661 atgagcttga aggttttagg agctatatac tgaaaaatag ggatagtcta aaagctcgtg
      721 acgcaataaa acttttgaaa tatttaaaaa ctatgtccga ataaccagtg atctcatttc
      781 attgtagaaa atttttgact attctgccga gaggtcccag aagtttgcgt ccttaaattc
      841 ttcaattggc tttcccaatt ttttccattc tttgaaggat cttgaataca atctaatttt
      901 tttcacgcct ccaatcctca atgcatagta tgcaagccct gatagagttc ctacgctgcc
      961 acaatatgtg atgacctcat catttgtgga tatcccccta ttttccataa atctcttgat
     1021 ttcttggggt tcccttagta ttgaatcagc tgttcctaac atggtataag gtaagttagt
     1081 agcccctgga atatgctcac tcaaaaaatt taggcgttct cttgaatcaa taagaatcct
     1141 attctgctcg ctttttgctt tctccacttc atcgtagttg gcaaatattt cattatttac
     1201 tttgagagaa tgtttagcat gagggaagac attcactttt ttctctgttt caaatccata
     1261 acttttccac ttagcaaagg ttgtttcaag taatgatgtg tttgaatgtc ccacatactg
     1321 gaatgtccat gcaaccctcg cagcaagtgc accaaaggta tcatcatata cgacaacagg
     1381 agtcttatca gaaattccag tttgttccag caattgaact attctttctg gggaatcatt
     1441 gtcaagcact ttggcaaggg gtattgatac cgctgtctta atatgttctt ttttatactc
     1501 ttcttctttc ctgacatcca ccactcttac tgaatttttc ctaatcaaag ttctaagtat
     1561 atctgcgctt gtaatgacac cttgcaagtt gttgaatgta tgattctttg ataggatgct
     1621 tttagttttt ttttccttgg aagtatattt caagctgcac attcaccttt tgctgtcttt
     1681 gcactgaatt taatatcgtt accataatcc atgtaggatt ctggatcgtc actaggactt
     1741 ggtaatgata tagtctgcat caacgccgtt tttatgtcat ccaggttctt tatttctcca
     1801 ttatcattga ttgctccatt aatcaatttg cctatccacc ttgtaagtga ttcattcgca
     1861 cttcgttcct ttctgtatat ttcaattatt tttattatgg tagaaatgac tctttttgct
     1921 ggcacacgca ttacagttct acccagcata ccatcttctc catcccttcc tccaaacatc
     1981 atcgtgtaag ttggagtcat ggttccctct attcttgatg ctccaccata gaatccaatt
     2041 gttgcaatct catgttgacc acaagaattg ggacatccac ttatcttaat cgttgagtct
     2101 ctaagatcat cctcagtatc cagtcctagc tcaatgaatt tggactggat ttcttttgcc
     2161 agtctatgag aattggttat tgctagattg catgatgttg taccagaaca tccaacggca
     2221 gatgacatag tcagtgcacc aggatttgca aggccaatct ttgcaagatc gttataaaat
     2281 tctggtaaat ccctggcttt aacaaacctt actgcaaagt tttgatttgg agtattcctg
     2341 gcacaacctt caccagagta attctgaata gtcttcgcaa gggaccgaag ttggtttgat
     2401 gttatatcac cggcgcctag tgtaacaaat acaacaaagt aaccattctg tttctgtgat
     2461 accacattgg agtgaatcca tcttttgtac gggtcactat taatgtctac tttttcatta
     2521 attagtggta atttcttacc gtttgacaat tgtctaatac tggtgccttc aaagtccact
     2581 ttgtatctat ttaatgtttc aagtgaaatt gtcatttcta cgtttgatct ttctttgatt
     2641 actagtttct ggaatttttc ccaccccatt tcattgacca gatatctcat cctattcctg
     2701 gccatatttt ctcgattacc aagtctatca aacaacctca ctacagccat gcatgtagac
     2761 acgactctat cttcaggagt aaattcctct aactggtgcc ctatgaacga agcagctcca
     2821 agccctccac cgaggtatat cttgaatcca ttagcttcgt cctttttcat cggaatcaag
     2881 ccgatatccg caatcctaac caaaccatga tttgaacaac atgcgaaatt gatcttaaat
     2941 tttcttggca aattttggca caccggattt ctaagaaaga atcgtgcaat tgccttggaa
     3001 taaggagtcg aatcaaattc ctcgtctggg cagacaccag caaaatggct acacatgacg
     3061 ttcctgattg tattgccaca agcctctctt gttgttagtc ctacctcaac tagacctctc
     3121 ataacctcgc ttacatcttc aagctgtacc cagtgaagct gaatattttg acgagtagaa
     3181 acgtgggccg aaccaattga aaaggcttcc gacattgacg caatcttctc taactgttct
     3241 ggtgttatct caccgctagg aattttgatc ctaatcatac tgtaattctg ttgcaggcgg
     3301 gatccataag ctccatgttg aagtcggaaa cgccgaaaat cgtcttcact catctttccc
     3361 tttctaaaga gttttacgtt ttgaccaaaa atctcggttt cctcttcttt tccccacctt
     3421 ggattggatt tcggagaaaa atgcttttta tcagtataat ttagaacttc tcttttcaat
     3481 actattctaa tttctttttc aaaaccatat attttttgtg gaattaacta tttttggcat
     3541 tttaactaga ttaacggggt aaattactcc tttcaatatt aaactgccat cggatatttg
     3601 ttaatatcat atgaatgacg tgtgtaatct ttaatattca ataacaaagt tgattgttca
     3661 aatcaaaagg aattcttacc aaattaacgt ttcaaaatta ttgtagacta aaaagaatgg
     3721 atggggagag atttgaactc tcgaccacct gtgtgtgaga caggtatcat aaccagtcta
     3781 gaccacccat cccaagtttg attaatattt tcccaattaa tatcttgata aatttctagc
     3841 aaaaggtaca agaataattg gaaaatgtat ctacgtccct tcgctaaatc cagtcaaata
     3901 agtctgctgt tcttcggtga gagcatctat attgatgtcc attgattcca attttgcttt
     3961 tgcaatttct tgatcttgtg atctttcgat atcatataca gctggagaaa gtgatccctt
     4021 cgattgaatc aacttaatag ccgaaagaag ctgatttgaa aagctcatat ccattacctc
     4081 tgaaggatga ccttctgcag cgacgagatt caccaatctt ccttcaccaa ttagatatat
     4141 tttatttcct ttcttgagtt catattcagt tgtgttctca ttgatttgtt ttaccagttt
     4201 agagtttgat ttaagggcat caacagaaat ctcgacattg aaatgtcctg cattggctag
     4261 gatgcttcca tctttcatct tcaaaaaatg ttcctctctt attacatcct tacatccagt
     4321 cgtggtaata aatagatcac ctgatgcagc cgcagactgc atcggcaaaa cagagtaccc
     4381 atccagtttt gccttcaatg ctgcaatggg atctatttca gttattatga cattgcctcc
     4441 aagcccagct gccctttttg caattccttt ccccacatgt ccatatccag acacaacaac
     4501 atttttgcct gaaatcagta tgttagtagc cctaattatc ccatctaagg ccgattgtcc
     4561 tgtaccataa acattgtcaa aatcgtgttt tgtttcagca tcattgacgg ccattatggg
     4621 atatttcaat ttaccatttt tctccatagc tcgtaatcta attactcctg tggtggtttc
     4681 ttcagttcca ccataaattt cgctcatatt tccagcggaa ttatgcattt caacagtcag
     4741 gtccgctcca tcatctattg ttacgttagg gtttagtgcc attgttgcat gaatatcatc
     4801 gtagtactgt tcatttgaaa cacctctact tgcaaatact gagattcctt catgtactag
     4861 tgcagcagcg acatcatctt gtgtactcaa gggattgcaa ccacaccacg ctaaatcagc
     4921 acccaaatcg cgtaatgtgc gaattagaac acccgtttct tttgtaacat gcagacatcc
     4981 agcaatcttg acgcccttca aaggactgtt gagtttaaat ttttttttaa gattagataa
     5041 aactggcata tgaacctctg cccaatcaat ctttttcttt ccctcttcag ctaaattagg
     5101 gtctttgatt ctatatttca ttcatctgtg tgacctattg gagacatatt attcttcacc
     5161 tcaaatttag taatatcgtg ggtatgtgga attcaagagt atgagtacaa tgatccaaat
     5221 atcttattgt caattaggtt tggtcaagcg gatatcccat aattaagaag aatatacgca
     5281 aactaatatt ataataattg caagaactac tttatcgaga gaaccatgag aaggctccaa
     5341 attgcggtta tagggtataa ccaagataaa tcaagcgaaa aaacaaacca tatagcatat
     5401 caggttggaa ccgaaatagc gaaggcaaat gctatcctaa tttgtggtgg actgggaggt
     5461 gttatggaat atgcatgtaa aggagcaaaa gaacatggag gtttgactgt gggaatcatt
     5521 ccccaggaag aagctcaatt tgctaatagg ttttgtgatg ttgttattgc aacaggaata
     5581 ggttatgcca gagactttgt cgtggcaacc tctgcagatg gaattattgc tgtgggtgga
     5641 ggcgtaggaa ctttgataga gctgtgcgtt gggtatatgt taaaaaaaat attggtaaca
     5701 attcccagta gtggaggtac tgctgaaaat tttggtggga gatatcttga tgatagaaaa
     5761 agggtattca tacaaacatc acaagatgct tattctgcag tcaaagtaat atcagactat
     5821 tttggatcac aacaagagcc atagaggcag atactaaata tggaaataag aagtctatgt
     5881 tgtaatagtc tttagataag gatcaggggt gtaaaatgat ccatttgttc cttccaattg
     5941 attcagagta cttataattt tttcaaaacc agactccttc ccaatctcaa atagttcttt
     6001 tctaagaccc attcccaatc tcatggccaa ttcaacatcc tctcttgtac atacaccatt
     6061 ggaaatcaac caagctgcat tatttatcgc aactgataaa atcctaattg gatcgtattg
     6121 ttttgcttcc tcctcggata atggaaccct ttcataattc ttgtcaccat aagaatagaa
     6181 accctctcct gattttttac cgtattttcc tgatgaaaat agttgttcta ttttaggatg
     6241 tggattcact acttttttat cacgagaata catttcgata gtcgccctgt ggataacatc
     6301 aagtccagta tagtcggcca attcaaatat acccattggt agatacattt taaatttcac
     6361 tgccgagtca atttgagtca tacttttgct gtcattctct aagcagtatg cagcctcgtg
     6421 cactaaagga atgaaaattc tatttaca
//
LOCUS       DASUMD010000055         5135 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_565631, whole genome shotgun sequence.
ACCESSION   DASUMD010000055 DASUMD010000000
VERSION     DASUMD010000055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5135)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5135)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5135
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_565631"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..842
                     /locus_tag="VFX26_01430"
     CDS             <1..842
                     /locus_tag="VFX26_01430"
                     /inference="COORDINATES: protein motif:HMM:NF013565.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HEX5573167.1"
                     /translation="ESPWGRGRPGWHIECSVMVSKFLGNEIEIHGGGTDLIFPHHENE
                     IAQSETFNERKLAKLWMHVGMITINSEKMSKSLRNMIVLKSALKKWGSNVLRLYLISS
                     QYSKPMDYNDEILQESLQKWRLIEHCIYELRTTKNVSENTDEFEDKCKGFINDFLSAL
                     DSNLNTPLALTSFMKLVSYVNNLSSLEKLTIRMSDKALPIVDTIMDIIGIKIMEIKNE
                     TKIKIEEMIDRRNNLRAEKKFQEADNLRKKIFELFDVELTDHINYTSWKKKERIEFEC
                     ERL"
     gene            953..1495
                     /locus_tag="VFX26_01435"
     CDS             953..1495
                     /locus_tag="VFX26_01435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573168.1"
                     /translation="MKNKYSFFRMIIIALIVVSTSIVMSLDPIKDNVQVFSESTSVLV
                     PQPQEQSGNKSSIQGFIDSLRALVSKSTELTSKYQQELGKWTTKENDNLTMITITDNY
                     LSQFEELENEARDLVVPKGQENIKDSFIKSVNSEASSYEHFKNYLITGNKTEEKLSND
                     DFSLAFQYEQVYSDFLLKNR"
     gene            1628..2272
                     /locus_tag="VFX26_01440"
     CDS             1628..2272
                     /locus_tag="VFX26_01440"
                     /inference="COORDINATES: protein motif:HMM:NF038353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxLYD domain-containing protein"
                     /protein_id="HEX5573169.1"
                     /translation="MLLFCSTILLIINGTGYSIDNFSILEKNIVIDQSGFIHLLGEIR
                     NTSNETQRSITAYANFYDKNGQNIGNGSGIVSLRSLNTGQVSPFEIIFLDKNQTKHFF
                     NYTLNFTSEIGQQKPDSIVITSLKSRPDIFGYYYVSGRISNMGNDTATNVLAIASFFD
                     SNGKIIGLSSAITEPSNMTSHSTASFTVVMDDKLQSPKIKNYSLTVDSDQYASK"
     gene            complement(2808..3365)
                     /locus_tag="VFX26_01445"
     CDS             complement(2808..3365)
                     /locus_tag="VFX26_01445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEX5573170.1"
                     /translation="MLPRIDYIKQGRMRLGMTQRELASLSGISTSMINQIESGRCKPS
                     YDTAKKIFEVLSSQEGKTSLKAGDICSKEVISVQKDEKLEVAIEKMMKNSISQIPVFD
                     VYKIVGLVSEDILARKVLESDDKKNIHQVPILQIMEPPPPIVDIATPAKALIPLVRFA
                     KCVLVSRKGEITGIITITDTLKMAE"
     gene            3493..4770
                     /gene="prf1"
                     /locus_tag="VFX26_01450"
     CDS             3493..4770
                     /gene="prf1"
                     /locus_tag="VFX26_01450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor aRF-1"
                     /protein_id="HEX5573171.1"
                     /translation="MSQDTHKKKWDSVKRYKLTKMLNQLSNITGHGTELVTVYVPPRR
                     PIFEVIGQLRNESGTASNIKSDLTRTHVQDALSKTVEHLKLFKETPENGLAIFCGAIP
                     NNKGIGNEKIELYSVLPPKPIQINLYRCDDHFWTDHIRDMLRDEKVIGLLAIDSQEAG
                     LGILTGDRWEVIDTLTSGVAGKHRQGGQSARRFERLRENELNEYFHRIAEHAQKIFID
                     EHKISGLIVGGPGPTKENFLKEEYLDYRLQNNVLATIDISYSGSEGIRELLEKVNEQG
                     IISEYRLLEEKKLVKKFMSQVYSDEGLSVYGIHDVLDMLKSGIVDTLIITDEIPYMHL
                     EIKCNKCGDIDEKYVDRIDLINVKQEEVSKSCPKCGSQDREITEKDIVDFLEELSANI
                     GSKMEVISSKTEEGAQLGSLGNIGALLRFKPSH"
     gene            complement(4789..>5135)
                     /locus_tag="VFX26_01455"
     CDS             complement(4789..>5135)
                     /locus_tag="VFX26_01455"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013401.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HEX5573172.1"
                     /translation="YPINTGHTLVLPKKHHKDIFTMGDDEIGKLFSTVSFLAKGIVKA
                     LDAKGLNIGQNNGRAASQIVPHVHVHIIPRYNYDSPNGRWPSRYLISEEELDKIAQKI
                     RASLTVYGIKAN"
BASE COUNT         1762 a          842 c          976 g         1555 t
ORIGIN      
        1 gggaaagtcc ttggggaaga ggaagaccag gttggcatat tgagtgttcg gtcatggtat
       61 caaagttcct tggtaatgaa atagagattc atggaggtgg cactgacctg atatttcctc
      121 atcatgaaaa tgaaattgca caatctgaaa cttttaacga aagaaaacta gcaaaactat
      181 ggatgcatgt aggaatgatt acaattaatt cagaaaagat gtcaaagtcg ctcagaaata
      241 tgatagtgct taagagcgct ctcaaaaaat ggggttctaa tgtccttaga ttatacctga
      301 tttcttctca atattcaaaa cccatggatt acaatgatga aatattgcaa gaatcattgc
      361 aaaaatggag actaattgaa cattgcatct atgaacttag aacaactaaa aatgtatctg
      421 aaaacacgga cgaatttgag gataaatgta aaggtttcat aaatgatttt ttgtccgcac
      481 ttgatagtaa cctgaataca ccattagcat tgacctcgtt tatgaagctc gtttcgtatg
      541 ttaacaactt gagttcattg gaaaaattaa ctattaggat gtctgataaa gctctaccta
      601 tagtagatac catcatggat atcataggca ttaaaataat ggagattaaa aatgaaacta
      661 aaatcaaaat tgaagagatg attgatcgga gaaataatct cagagctgag aagaaatttc
      721 aagaggccga taatttgaga aagaaaatct ttgaattatt tgatgttgag ttaacagatc
      781 atatcaacta tacatcatgg aaaaaaaaag agagaattga atttgaatgc gagcgattat
      841 agttgaattg atgggttctg aagattcatt actcgctgtt tattatttct tacaaaagga
      901 tacaccaaga cttgataaac ttttaattat tcaagacatt gaataatctt aattgaaaaa
      961 caaatactca tttttcagaa tgattataat agctttgata gttgtatcaa caagcattgt
     1021 catgtctctt gatcctataa aagacaatgt tcaagttttt agcgaatcaa ccagtgtcct
     1081 ggtgccgcaa ccacaagaac agtcaggaaa taaaagtagc atccaaggtt ttatcgattc
     1141 actcagggcg ttggtatcaa agtctacgga acttacgagc aaatatcaac aagaacttgg
     1201 aaaatggaca actaaggaaa atgacaattt gacaatgatt actataactg ataattattt
     1261 gtcccagttc gaagagcttg aaaacgaagc aagagatctg gttgttccaa aaggacagga
     1321 aaatattaaa gattctttta tcaaatctgt caattcagaa gcttccagct atgaacactt
     1381 taagaattat ctcattaccg gaaataaaac tgaagaaaaa ctttcaaatg atgatttttc
     1441 tcttgctttc caatatgaac aagtttattc ggattttcta ctaaaaaatc ggtaaactat
     1501 agagaaaagt tattttgaaa cacagatata ttccctcaac ttaccagtat atttaggatg
     1561 tattgttgtg aaggattatt ttagaaattt tttctgctcc ttttcctttc aattaatccc
     1621 gataacagtg ttactatttt gtagtacaat tctactaata ataaatggca caggctactc
     1681 tatagataat ttcagtatcc tagaaaagaa catagtaatt gatcagagtg ggtttattca
     1741 tctactgggt gaaataagaa acacatcaaa tgaaactcag cggagtatca cagcttatgc
     1801 taatttttat gacaaaaacg gacaaaatat aggcaatggg agtggaattg tctcattaag
     1861 gtcattaaat accggacagg tatcgccatt tgaaataata tttctcgata agaaccaaac
     1921 caaacacttt tttaattata ccctcaattt tacgagtgaa attggacagc agaagccaga
     1981 tagcattgtc ataacgtctt taaaatctag gccagacata tttggatatt actatgttag
     2041 tggaagaatt tccaatatgg gtaatgatac cgccacaaat gttcttgcga ttgcgtcttt
     2101 ctttgacagc aatggaaaga ttattggtct atcaagcgca attaccgaac cgagtaatat
     2161 gacttcgcat tctacggcaa gttttactgt tgttatggat gataaactac aatcaccaaa
     2221 aatcaaaaac tattctttaa cagttgactc agatcaatat gcatctaaat gactagtgat
     2281 tttctattct aaactttcag aagaacgagg tggacttgat ataacattta aatcatcacg
     2341 tcaattgaag ttatgcgagt caactatccc ctaaagaacc ttaaggatac agaattatat
     2401 tatcccggcg caaattgaat tacatatgga gatatttcaa ccgtcgattt tcctcgccat
     2461 ttttccatat ttgtttatcg gtagctttcc aatatttgga ctgatattgg ttacaaagtg
     2521 gatagtaggt gatgttagga agaagcgaag actgacttta aaaatataat ttgaactaaa
     2581 ttagcttata tttaccagaa aatattaaag aatgctattc tgggaaaacc tgaaaatata
     2641 tatcacatag tagaatatta tacgtatatg ttggagggac ctgagagaaa atgcgccttg
     2701 tgtgaagagt ctctgccgag tggaagtgca ataaatatct gtgaaagttg tttaaaaagt
     2761 gcagattgtt gtgtcgggct ggaaaacctg agagaatagt tctgattcta ttcggccatt
     2821 tttagcgtat cggttatcgt tataatacct gtaatttcgc ccttccgact tacaagtacg
     2881 cattttgcaa atcttacaag cggaataaga gctttagcag gggtcgctat gtctacaatt
     2941 gggggcggtg gttccattat ctgcagtata ggtacttgat ggatattttt cttgtcatcg
     3001 ctctcaagta cttttctagc aaggatatct tcacttacaa gccccacaat tttatatacg
     3061 tcgaaaacag gtatctggct aatagagttc ttcatcatct tttcgatcgc aacttctaat
     3121 ttttcatctt tctggactga tatcacctcc ttgctacaaa tgtctccagc cttcaatgag
     3181 gtttttcctt cttgagaact aagaacttca aatatttttt tagcagtatc ataacttggt
     3241 ttgcatcgtc ctgactcaat ttgatttatc atggatgtgc taattccaga aagcgacgcc
     3301 aattcccgtt gagtcattcc cagcctcatc ctcccctgct taatgtaatc aatcctagga
     3361 agcatttaca gattatttat tctgatttca tatttttata gtaatagtac ggccataata
     3421 aacccaataa atggataaaa tgattgcctt aaccttatat tatatagact tagagatgac
     3481 ttactattag aaatgagtca agacacccac aagaaaaagt gggactctgt gaagagatac
     3541 aaactaacca agatgttgaa ccagctgtca aatattacag gccatgggac agaattagtt
     3601 acggtctatg tacctccaag aagaccaatt tttgaggtaa ttggccaact cagaaatgag
     3661 tcaggcactg cgtctaatat caaatcagat ttaacgagga ctcatgtaca agatgcactg
     3721 agcaaaacag ttgagcatct taaattattc aaggaaacac ctgaaaatgg acttgcaatt
     3781 ttttgtggag ccattccgaa caataaagga ataggtaatg aaaaaataga gctctattcg
     3841 gttctaccgc caaaaccaat ccagattaac ctatacagat gtgatgatca tttttggaca
     3901 gatcatatca gggatatgct tagagatgaa aaggtaatag gattacttgc catagatagt
     3961 caggaagcag gattaggcat acttactggt gacagatggg aggttataga tacattaact
     4021 tctggcgtcg ctggaaaaca tcgacaggga ggacagtctg caaggagatt tgaaagacta
     4081 agggagaatg agcttaacga gtattttcat agaattgcag agcatgcaca aaaaatcttt
     4141 atagacgaac ataaaattag cggtttgatt gtaggaggac ctggtccaac taaagaaaac
     4201 tttttgaagg aagaatatct tgattatcga ctccaaaaca acgtacttgc tacaatagac
     4261 atctcttact ctggaagcga aggaatcagg gaattattgg aaaaagtaaa cgaacaagga
     4321 ataatctccg aatatcgatt gctagaagag aagaaactag tgaagaaatt tatgagtcag
     4381 gtatattccg atgagggatt atctgtgtat ggtattcatg atgttctgga tatgctaaaa
     4441 agcggtattg tagacacatt gataattaca gatgagatac catacatgca tttagagata
     4501 aagtgcaata aatgtggaga tattgacgaa aaatatgttg atagaatcga tttgatcaat
     4561 gtaaagcagg aggaagtatc aaaatcgtgc cccaaatgtg gaagtcagga tagggaaatc
     4621 acagaaaaag atatcgtgga cttccttgaa gaattatcgg ctaatattgg aagcaaaatg
     4681 gaagttatct catcaaaaac agaagaaggg gcacagttag gaagcctggg aaatattggc
     4741 gcgcttttac gtttcaaacc atcacactaa tagaccatta cttgtagtct aatttgcctt
     4801 gattccatat actgtcagag atgctcttat tttttgggcg atcttatcaa gttcttcttc
     4861 tgagatgaga tatcttgaag gccatctccc atttggagaa tcataattgt atctcgggat
     4921 tatgtgaaca tggacatgag gtactatttg gctggctgcc ctaccgttat tttgtccaat
     4981 atttagtccc tttgcgtcaa gagcctttac aattcctttt gccaagaaag aaaccgttga
     5041 gaatagtttg cctatttcat catctcccat cgtaaaaata tccttgtggt gtttctttgg
     5101 gagcactagc gtatgtcctg tattaattgg atacc
//
LOCUS       DASUMD010000056         2127 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_123127, whole genome shotgun sequence.
ACCESSION   DASUMD010000056 DASUMD010000000
VERSION     DASUMD010000056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2127)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2127)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2127
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_123127"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(179..1498)
                     /gene="glyA"
                     /locus_tag="VFX26_01460"
     CDS             complement(179..1498)
                     /gene="glyA"
                     /locus_tag="VFX26_01460"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004372 - glycine hydroxymethyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0070905 - serine binding [Evidence IEA];
                     GO_process: GO:0019264 - glycine biosynthetic process from
                     serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HEX5573173.1"
                     /translation="MDAKESYYKVFDLVEKHHEWFRSSIPLIASENIPSPAVREAIVS
                     DFGNRYAEGWPGERVYAGCIYIDEVELICNELAKRVFKSEFADCRATSGVVANLAIYS
                     AFSNPGDHMLAASIPSGGHISHGKKEHSGTAGLVHGLNIEHYPFSKEDMTIDVDATKK
                     KVTEMIANGKKPAIAMFGGSLFLFPHPVKELATFMHDNSIYVNYDGAHVAGLIAGGEF
                     QDPIGEGSDSMTMSSHKTLWGPQGGIIVSLEKYADNIKKAIFPGNTSSHHLHHVAGKA
                     IALAESLEFGKEYAKQVIRNAKTLAESLAHFGFTVLGEKRGYTESHQLAVDVSKFGDG
                     GTIEKELEKANIILNRQLLPGDIKSGKHYMHPSGVRIGVPEVTRLGMKETDMKEIASF
                     IKQIVIDKSDPKTVASSVSNFREQFQKVQYAFENSTDAYEYIRIRAK"
     gene            complement(1907..>2127)
                     /gene="rpsI"
                     /locus_tag="VFX26_01465"
     CDS             complement(1907..>2127)
                     /gene="rpsI"
                     /locus_tag="VFX26_01465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HEX5573174.1"
                     /translation="FASTVAICRALTGTGKGGRDPKDHPFARSVRTEIRKRITEFDRH
                     MLSGDPRQTESKKFGGSGARRRKQKSYR"
BASE COUNT          617 a          421 c          365 g          724 t
ORIGIN      
        1 aataatccaa gtcctttcat atattttcta gattttctag gcaattgggt caacaaagtt
       61 atactagaag taaaatatat tgcacaagat gtaaaacctg ataaaactaa gttcataaaa
      121 atattgtctg ttcaagctac atagtttagc acaaagaggt gtccaaattg catgcctgct
      181 acttggctct tattcttata tactcataag catcggttga attttcaaat gcatactgta
      241 ctttttgaaa ttgttcacga aaattagata ccgagctagc aaccgtcttc ggatctgact
      301 tgtctataac tatctgtttg ataaatgatg caatttcctt catgtcagtt tccttcatcc
      361 ctaacctagt tacttcgggt acacctattc taactccact tggatgcata taatgtttac
      421 cagatttgat atcacctggc aggagctgtc tgttaagaat aatatttgct ttctccaatt
      481 ctttttcaat agttccgcca tctccaaatt ttgaaacatc tacagccaat tgatgtgatt
      541 ccgtataccc acgtttttct cccagaactg taaaaccaaa atgtgcaagt gattcggcaa
      601 gcgtttttgc attccttatt acttgttttg catattcctt tccaaattct aatgactctg
      661 ctaaggctat agctttacct gctacatggt ggagatgatg actgcttgta ttgcctggaa
      721 aaatagcttt cttaatgttg tctgcatatt tttctagtga gacaataatt cctccttgtg
      781 gaccccaaag agttttgtga gaactcattg tcatagaatc tgaaccctct ccaattggat
      841 cttgaaattc tcctcctgct atcaatccag ccacatgagc cccgtcataa ttgacgtaaa
      901 tactattatc atgcataaaa gttgccaatt cttttaccgg atgaggaaaa agaaatagac
      961 ttcctccaaa cattgcgata gcaggttttt taccatttgc aatcatttca gtgacctttt
     1021 tcttggtagc gtccacatcg atagtcatat cttcctttga gaatggataa tgttctatat
     1081 tgagtccatg cacaagaccg gcagttccag aatgttcttt tttaccgtga gaaatatgtc
     1141 ctccgctagg aatggatgca gctagcatat ggtctcctgg attagaaaaa gcagagtata
     1201 ttgcaaggtt tgcaactaca cctgaagtgg ccctacaatc agcaaattca gacttgaaca
     1261 cccttttagc caattcattg catatcagtt ctacttcatc aatgtaaata catccagcgt
     1321 agactctttc gccaggccag ccttcggcgt acctattccc aaagtctgat acaatggcct
     1381 ctctcacagc aggactagga atattttcac ttgcaattag tggaatagaa gacctgaacc
     1441 attcatgatg cttttcaaca agatcaaata ctttataata tgattcttta gcgtccattg
     1501 tgatgtttat ggtgacttta atatcctaat ttaaaatatt gcttgttatc ttgaaagtga
     1561 tttcgcagat tttagttagc tggacaggtt atcatgttga ctatttcaca acttttaatt
     1621 tactctagat tggactcata ttgatggata aaaatgatct taaatgtgcc ctgtgtggta
     1681 acacgttaac atttaggtac aaatctatgg aagagtggaa catttcagga tatctttgta
     1741 gtatatgcta tgagaaaaag ttaacggaat tttatatttc tccagatcgt agggatattg
     1801 cgaaaagata atatctagaa aaaaatagat cgtgattttc cagtaataaa ttttggatta
     1861 ctggtttgtg ggttttatta caaatgaaat gaaaagaata gaaaatctaa cggtacgact
     1921 tttgttttct acgccttgct ccagatccac caaatttctt tgattctgtc tgtctggggt
     1981 cacctgatag catgtgtcta tcgaattctg ttattctttt acgaatttcc gtacgcacgc
     2041 ttcttgcaaa tgggtgatct ttcggatctc ttccgccctt tccggtacct gttaacgctc
     2101 gacaaatagc aacggtactt gcaaatg
//
LOCUS       DASUMD010000057         2509 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_234258, whole genome shotgun sequence.
ACCESSION   DASUMD010000057 DASUMD010000000
VERSION     DASUMD010000057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2509)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2509)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2509
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_234258"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            61..1350
                     /locus_tag="VFX26_01470"
     CDS             61..1350
                     /locus_tag="VFX26_01470"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024258.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0042578 - phosphoric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair exonuclease"
                     /protein_id="HEX5573175.1"
                     /translation="MYKFAHITDCHLGSWRNPKLRDLNLQAFEKSISISIKEQVDFIL
                     ITGDFFDVNIPQLAPVKRAVEILKQARDSGIAVYMIYGSHDFNTANISMIDILHSAEL
                     FIKPTEFQTNTNSVILKFFVDKKTGAKITGISGRKVGLDREMYEKLDKKNLEMEDGFK
                     IFLLHKGIQEILPLDMNFRDSLPISLVPKRFDYYGGGHIHKRVEKKINGSVIVYPGPL
                     FGSSFQDLEETAKGEKRGFYIISFEKRILDCRFVEINVVDILYNEIVSSKWNSEKLED
                     EITKNISCLEVKNKIVLIKVKGKLLGKRSNIDFGKFSLDISNRGALMSFINTNNLSTD
                     ETKVIAVHSDNKFDIEREIFHESIKNFQTEPTLSDKVKKQINSKLTGKAGESISISLL
                     EILRNEKLENENTSTYDDRIFSLAKSVFDNEGYFYDD"
     gene            1603..1773
                     /locus_tag="VFX26_01475"
     CDS             1603..1773
                     /locus_tag="VFX26_01475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573176.1"
                     /translation="MVAFRVLIPMIRPLITVAGKSEIGQCATFNGNNISKSSAQQNHY
                     PSTYGFGTQNMM"
     gene            complement(1905..2279)
                     /locus_tag="VFX26_01480"
     CDS             complement(1905..2279)
                     /locus_tag="VFX26_01480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573177.1"
                     /translation="MSTKGKSSKSTKGKSSKSTKGKSSKSTKGKSIGLRESDDQHSGI
                     KAGGELGVEKSGRTLGKLKAGAEVGVEDDDKGSGNLQAGANIGLETDALDDVKHAADD
                     TFDNIKSGFKTARKKLSHLYDK"
BASE COUNT          859 a          411 c          422 g          817 t
ORIGIN      
        1 agcatgataa tttgtgtaaa cagtcaatat taaaatacaa ttgggatcga atagatacaa
       61 ttgtacaaat ttgctcatat aactgattgc catttaggat cttggagaaa tcccaagctt
      121 agagatttga atttgcaagc atttgagaaa tctatatcaa tctctataaa agaacaagtt
      181 gatttcattt tgattaccgg agattttttt gatgtaaata ttcctcaact tgcacctgta
      241 aagagagctg ttgaaatatt aaaacaagca agagactcag gaattgcagt atacatgata
      301 tacggttcac atgactttaa cacggccaat atttccatga tagatatttt gcactctgca
      361 gaactgttta tcaaacctac cgaatttcaa accaatacca attcagtaat actaaaattt
      421 tttgttgaca aaaagacggg agcaaaaata accggtattt ccggaagaaa ggttggtctg
      481 gatagggaga tgtatgaaaa gcttgacaag aaaaatttag aaatggaaga tggattcaag
      541 atttttctac tgcataaggg gattcaagaa attcttccgt tagatatgaa ttttagagat
      601 tcgctaccta tctctcttgt tccaaagaga tttgattatt atggtggtgg acatattcac
      661 aagagggttg aaaagaaaat caatggtagt gtgatagttt atcctggacc tctttttggt
      721 tctagttttc aggatctaga ggaaactgca aaaggagaaa aacgtggatt ctacattatt
      781 tcgttcgaaa agaggatttt agactgtagg tttgttgaga taaatgtagt agacatactc
      841 tataatgaaa tagtttcctc aaagtggaac tcagaaaaat tagaagatga aataacaaaa
      901 aatatctcct gtctagaagt taagaataag atagttctaa taaaagtaaa aggcaaatta
      961 cttggaaagc gttcaaatat tgattttgga aaatttagct tggacatatc aaatagaggt
     1021 gctttaatgt cgttcatcaa cactaacaac ttgtcaactg atgagacaaa ggtcatcgcc
     1081 gtgcatagtg acaacaaatt tgacatagaa agagaaatct ttcatgaaag catcaagaat
     1141 tttcaaacag aaccaacact gtctgacaag gtaaaaaaac aaataaattc aaagttgacc
     1201 gggaaagctg gagaaagtat atcgatatct cttttagaaa ttctacgaaa cgagaaatta
     1261 gagaatgaaa atacgagcac ctacgacgat agaattttct ctcttgcaaa atctgttttt
     1321 gacaacgaag gttattttta tgatgattaa gaaaagtata aacctagttt aataattgat
     1381 tatatgctat tgtggtaaca acgatgcact tataatcggg aaataaccat tccttcttaa
     1441 atttcaaaaa ctgattggat tctggatata tggaaaattc ttacagatac tgcgtcatca
     1501 aaaatcatag tcttgaatgt aatatatgtc tagatactaa tacattaaat ttacaatcat
     1561 gaaaattaaa ggttcaacga gaatgccgat aatcattctt tgatggtagc ctttagagta
     1621 ttgataccaa tgataagacc cttaataacg gttgcgggta aatccgaaat tggtcaatgt
     1681 gctactttca atggaaataa tattagtaag agttcagctc aacagaatca ttatccttcg
     1741 acctacggat ttggtactca aaatatgatg taatgttgct ataaacaaca tttgattggt
     1801 ctaattttgt aacgctatgt attaatttaa aatattgacg ctaaataata ttacagatag
     1861 gatccggaga aatgcctggc cagatataat gaacaatcat atctctattt gtcgtacaga
     1921 tgcgaaagtt tttttctggc agtcttaaat cctgacttta tattatcaaa ggtatcgtcg
     1981 gcggcatgct ttacatcatc taaagcgtca gtttccaatc ctatgttagc acctgcctgt
     2041 aagttacctg atcctttatc gtcgtcttcg actcctactt cagcacctgc ctttaattta
     2101 cccaaagtac gtccgctctt ttctactcct agttcgccac ctgcttttat acccgaatgt
     2161 tgatcgtcgc tttcccttag gccgatactt tttcctttag tactcttact actttttcct
     2221 ttagtactct tactactttt tcctttagta ctcttactac tttttccttt agtactcatg
     2281 ctattttatg agtaacaagt tatttatacc aatcttcatc aaaaatccat tcactctttc
     2341 ttgattaggt atattatttc ctattatgtg acttacgtca taactatata atagtaactt
     2401 ataatccaaa aggtcgcata atccagattc ctgataggac tttaccgcta taatcgatgg
     2461 atttacataa ttatatagct atactgatgg gtgaagaata tgtcacaac
//
LOCUS       DASUMD010000058         6973 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1340347, whole genome shotgun sequence.
ACCESSION   DASUMD010000058 DASUMD010000000
VERSION     DASUMD010000058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6973)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6973)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6973
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1340347"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(162..782)
                     /locus_tag="VFX26_01485"
     CDS             complement(162..782)
                     /locus_tag="VFX26_01485"
                     /inference="COORDINATES: protein motif:HMM:NF018712.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1326 domain-containing protein"
                     /protein_id="HEX5573178.1"
                     /translation="MASSNANDWKLEGDYFEGCNCDSVCPCIFLQDPDKGFCNVVVAW
                     HIEKGHFQQTQLDGLNAVAVFVAPGNMFTGPKMKAAFYLDEHANQKQNEALSKIFSGQ
                     LGGFFAAAANLVGEMVGIKSAPITFGKEGKRRFVLIPECMELEIESLKGNDPNRDSLV
                     TNPSFTVAPGYEPVIARATKHTYKDFGFEWDSSGKNGFYSRFKYAP"
     gene            complement(1294..1926)
                     /locus_tag="VFX26_01490"
     CDS             complement(1294..1926)
                     /locus_tag="VFX26_01490"
                     /inference="COORDINATES: protein motif:HMM:NF018712.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1326 domain-containing protein"
                     /protein_id="HEX5573179.1"
                     /translation="MTSTQTSISKWHMKADYVETCNCDFGCPCNFNGFPTYGFCRALT
                     LYHIQVGSYGDVKLDDLDVVTAFSWPKAIHEGNGTVQLFITKNSNEQQRNSVITIFLG
                     QAKGDGPFVIFASTCKYFLEPQFVDINAKIDGKKSSFSIPDIMDVQVESFINPVTGEE
                     QDTKIQLPKGFIWKLAEAAKTKLMRISTPNLNFDDSGKNAFYSVVEFSGP"
     gene            complement(1997..2887)
                     /locus_tag="VFX26_01495"
     CDS             complement(1997..2887)
                     /locus_tag="VFX26_01495"
                     /inference="COORDINATES: protein motif:HMM:NF021465.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2182 domain-containing protein"
                     /protein_id="HEX5573180.1"
                     /translation="MNLIQRIIIFSLISTAGLAWLLSTFQPDMMKVMNSYNPIFITLY
                     IATWTAGMAAMMFPAIIPMVLLYNKLITNNQSDSSQEIVKLKFPYSFKLILFVGMYLV
                     VWAVTGIVLLLGWSVPMNIIVSMPANNNIGIIFGSILIISGIYQFTPLKNKCIGYCES
                     PLGFFMRRWKSGMSGAIKMGAYHGLYCLGCCWPYFLIMVALGWMNLLWMGLFAAIIFG
                     EKMWSKGIWIARGVGIGLIVLGISSSMGLITLHDSMMFMNMKSNSAEMEMSPNVTNNG
                     INESKYEMGKKPTMTDSMNM"
     gene            complement(2963..3601)
                     /locus_tag="VFX26_01500"
     CDS             complement(2963..3601)
                     /locus_tag="VFX26_01500"
                     /inference="COORDINATES: protein motif:HMM:NF018712.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1326 domain-containing protein"
                     /protein_id="HEX5573181.1"
                     /translation="MDIPKWSLLGDWFDVCKCNIPCPCTFAQTPSYGDCDGVLVYHIK
                     KGQYGEISLDELNVLVLSYFKGNIWSGNTKADIAVFFDEKANKQQRNALNMIFTGKAG
                     GFMAEFAKLIGEVRGIEFALINFEVADDLAYWSAEIPGKVMAKGEALTGPMTPRGKRV
                     QTINAPGSEVGPGTVTTWGTAVIDEVNVPNVRYQWKRSGRSSKHITFNWRGP"
     gene            complement(3795..3935)
                     /locus_tag="VFX26_01505"
     CDS             complement(3795..3935)
                     /locus_tag="VFX26_01505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573182.1"
                     /translation="MTFKCKICGSQFEEKERLDIHKKVHGRKAKISEYGSPEFNQDRL
                     RG"
     gene            4196..4663
                     /locus_tag="VFX26_01510"
     CDS             4196..4663
                     /locus_tag="VFX26_01510"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEX5573183.1"
                     /translation="MNTDKTARKKTFSKILVAIHESSKSADKAVDYATRIAKDYDAIL
                     VVLYVVRTQTNSDTVTLPSHVIDFKKQAEAYLAKILEKMHKEGEADNIVKVKTEIIAS
                     IKIPGAIVNYAKDKNIDLIVVGPRGRSKLKSLVLGSVTSDVVRLANCPVLTVR"
     gene            5062..6159
                     /locus_tag="VFX26_01515"
     CDS             5062..6159
                     /locus_tag="VFX26_01515"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX5573184.1"
                     /translation="MKANFDSRKIDEQKLSEFMLKAMGDVTSTISAMLVIIGDRLHLY
                     QTMAKLGRPITSEELAKTTNTSERLIREWLANQAAGGYIIYDPPNRKYSLPPEQAMAL
                     ADENSPVYILGAYQAIRSYFKDEDKFVEMFKSGKGMKWGEHHHDLFEGSALFYKPNYV
                     GNLVSSWIPSLDGVKEKLQHGAKVADIGCGYGISTILMAKAYPNSRFYGFDNHGPSIE
                     RAKDQIRKEEETGGVSINNVEFVSVNANDESIGNDYDLITFFDCLHDMGDPLGAMKFA
                     RQSLKAGGTCMIVEPMANDKLEENLNLVGRAFYAASTLVCVPNSLAENGPALGAQAGE
                     KKISEIVKAAEFTIFRRATQTPFNIIYEAKP"
     gene            complement(6314..>6973)
                     /locus_tag="VFX26_01520"
     CDS             complement(6314..>6973)
                     /locus_tag="VFX26_01520"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX5573185.1"
                     /translation="VYSHAHKDHIGGAHVLPAGIEIIAQKDTLNFLKMANDTDRPLPT
                     QIFDNETTITLGNTTLQLAYSGPYHQNGNIFIYSPQHKILMAVDQFSPGGTPWKHLAV
                     TPHVPSYIQSYDKVLDYDFDVYVSGHGIGTKDDVQLEKEYVNDLKNNAGYAISNVNFT
                     EATKNANKNNNAEVTEAYFNSMTDVCVDKTDGKWKGKLQGVGVWTDEHCEKMIISLRN
                     D"
BASE COUNT         2275 a         1352 c         1195 g         2151 t
ORIGIN      
        1 ttgtatttat tgtcgtaatt attttcataa taagtctagg accgggaaca aaaagcaaaa
       61 taccaagtaa taaaacccta ctacatgcag ggttcgaatc cctacgggct cataaataaa
      121 aacataattt taattccgac tacttatttc acgaggaagt tttagggcgc atacttaaat
      181 cgagaataga aaccattttt acctgaggaa tcccattcaa atccaaaatc tttataggta
      241 tgtttagtag cgcgcgctat tacaggttca tatccaggag ctacagtgaa ggaaggattt
      301 gttaccagac tatctctgtt gggatcgttc cccttcaatg actctatctc taattccata
      361 cattctggta ttaacacaaa acgacgtttt ccttccttcc caaatgttat cggagcagac
      421 tttattccaa ccatctctcc aacaaggttt gctgctgcag caaagaaacc acctaattgc
      481 ccagaaaata tcttggacaa agcctcattt tgtttttggt ttgcgtgttc gtccaggtaa
      541 aaagcagcct tcatctttgg tccagtaaac atgtttccag gcgctacaaa aacagcaacg
      601 gcatttaacc catcaagttg tgtttgttgg aagtgacctt tttctatatg ccatgctaca
      661 acgacattgc agaaaccttt gtcagggtct tgcaaaaata tacatggaca aactgagtca
      721 cagttgcaac cttcaaaata atcaccctca agtttccaat cattagcatt actactagcc
      781 attttttctc atagtaaaag aacgatcttt tagatataag gtttatcttg taaatgggtt
      841 ttcagcatta ctactgatat gatatttgga aggcacatcc atgattacaa aaaatgtgat
      901 aaaaatcatt tgtaattatt ttcattatag tttgtagtct tattacttgt accatgagcg
      961 acgaatttga aagagaagga atcaaagatg aaacccatga gctagaaaac gttgaacagg
     1021 acgaggaaga tgagaaggaa aagcaggagg aagtgcaagg ggagtcatga taagtgagca
     1081 caaactcatt tttcagttaa atttatccaa atacgccggt tgattcaatt agtaggaaaa
     1141 ttctctatta gaaacaattg gaaccgatag cgtcgcgggt accgacttgc ctcaaccaat
     1201 tatgtcttgt ttaactgcct ttcatattta attgaaacta tgataccatc atcttgaaac
     1261 tctaatcatt tcacttcatt aaggtataaa caatcaagga ccactaaatt ctacaactga
     1321 gtaaaaagcg tttttacctg aatcatcgaa attcaagttg ggtgtggata tacgcattag
     1381 ctttgttttt gccgcttcgg caagtttcca tataaagcct tttggcagct gtatctttgt
     1441 atcctgttct tcaccagtaa caggatttat gaaactttct acttgaacat ccattatatc
     1501 tggaatggaa aaactacttt tcttaccatc tatttttgca tttatatcca caaattgggg
     1561 ctcaagaaag tatttacaag tagatgcaaa tattacgaac ggaccgtcac ccttggcttg
     1621 acctaaaaag atagtaataa cagaattgcg ttgctgctcg tttgagttct ttgtaatgaa
     1681 taactgtaca gttccgttac cttcatgtat ggccttaggc caggagaacg ctgttacaac
     1741 atcgagatcg tctagtttaa catcaccata gctccctacc tgaatatgat ataatgtcaa
     1801 agccctacaa aatccatatg ttggaaaacc attaaagtta cagggacatc caaaatcaca
     1861 gttgcaagtc tctacgtaat cggccttcat atgccactta gaaatagaag tttgagttga
     1921 cgtcattatt tgtgtaaagg aaattatgat attaagtatt tcctagaaac aataatagat
     1981 acttcaaaaa atatctttac atattcatac tatctgtcat agtgggtttt ttacccattt
     2041 catatttact ttcattaatg ccattattcg tcacatttgg tgacatttcc atttcagctg
     2101 aattactttt catattcata aacatcatac tatcgtgtag tgttattaac cccatactgc
     2161 ttgaaattcc cagaacgatt agcccaatgc caactcctct tgcaatccat attcctttag
     2221 accacatctt ttctccaaaa attattgctg caaacaagcc catccacaaa aggttcatcc
     2281 atccaagagc aaccataatt aaaaaatatg gccagcaaca tccaaggcaa taaagtccat
     2341 ggtaggctcc cattttaatt gcccctgaca ttccactttt ccatcttctc ataaagaaac
     2401 ccaggggaga ttcgcaatat ccgatgcact tgttctttag cggagtaaat tggtagatac
     2461 cagatataat caatatgctc ccaaatatta ttccaatatt attattcgcc ggcatactca
     2521 caataatatt catgggaaca gaccaaccta atagtaaaac aatacctgtt accgcccaaa
     2581 ctacaagata cataccaaca aaaagaatta acttgaaaga gtacggaaat tttagcttaa
     2641 cgatttcttg agatgagtct gactgattat tggtaatgag cttgttgtaa aggagaacca
     2701 taggtattat tgccggaaac atcattgcag ccattcccgc agtccaggtc gcaatatata
     2761 acgtaataaa tatcggattg taggaattca taactttcat catatcaggt tgaaatgttg
     2821 ataataacca tgctagtcct gcagttgaga taagtgaaaa aattattatt ctttgaatta
     2881 aattcacaga ttattaaaat aaagcgacat aaaataagga tttcgactac tgacaggagc
     2941 gaaataattc tcgaaatacg atttacggac ctctccaatt gaatgtaatg tgtttgcttg
     3001 atcttccaga tctcttccat tggtagcgaa cgttgggaac attcacttca tcgattacag
     3061 ccgtccccca tgttgtaact gtgcctggac ctacttcgct tccaggagca ttaatagtct
     3121 gaactcgctt tcctcttgga gtcatggggc cagtaagcgc ttcacccttt gccattacct
     3181 ttcccggtat ctctgcactc caatatgcaa gatcgtcagc aacttcgaaa tttataagag
     3241 caaattctat cccccgaact tctccaatta actttgcaaa ttcggccata aatcctcccg
     3301 cctttccagt aaaaatcata ttcagggcat ttcgttgttg cttgttggct ttctcgtcaa
     3361 agaatactgc tatgtctgct ttagtgttac ctgaccaaat attaccttta aaataagaca
     3421 gtactaaaac attcagttcg tcaagtgata tctcaccata ctgccctttc ttaatatggt
     3481 aaactaatac gccgtcgcag tcaccataac ttggcgtctg agcaaaagtg caaggacatg
     3541 ggatattgca tttgcaaaca tcaaaccaat ctcctaatag actccacttt ggaatatcca
     3601 tttgctataa gtaaagttta gtggtatttt aggattatat ctttctaatt tccagacttg
     3661 agtaaactag aagtctattg agaaaagcaa aatacaaggt agtagaaccc tagtacatga
     3721 agggttctaa tcccgacagg ttcagatttt tatctggtat tattaccaat attaagtaaa
     3781 ataaagtcta tctgttagcc tctcaaccta tcttgattaa actctggact tccatattca
     3841 cttatctttg cctttctgcc atggaccttt ttatgaatgt cgagacgctc tttttcttcg
     3901 aattgtgaac cacaaatctt acatttaaag gtcaacttaa cttattgctt caaactttta
     3961 gaaaaggatt tctaatccaa aacttattca agttctgagc caataccgtc cgccctacaa
     4021 atcctaccga gctatttgta cgaccatcca atcagacatt gtttctaaat gaaaaagcta
     4081 aataccaagt aatagaaccc tactacatgc agggctcaaa tcccgaagac ccctaaagca
     4141 gctacattgt atagattcac tttttaggac ctatcgacaa caataaggca gtaagttgaa
     4201 tacggataaa acagcgagaa agaaaacatt ttccaaaatt cttgtagcta tacatgaatc
     4261 cagtaaatca gctgataaag cagtcgatta tgcaactaga attgcaaaag attatgatgc
     4321 aatactagta gtcctttacg tggtccgaac acagactaat tcagataccg taactcttcc
     4381 aagtcatgta atcgatttta agaagcaagc agaagcatac cttgctaaaa tattggaaaa
     4441 aatgcacaaa gaaggcgaag cagataatat tgtaaaagtc aaaaccgaaa ttatagcttc
     4501 aattaaaata cctggtgcca ttgtaaacta cgccaaagat aaaaacattg atttaattgt
     4561 tgttggaccc aggggacgat ccaaactcaa gagtttagta ttaggcagtg ttacttcaga
     4621 tgttgtaaga ttagccaatt gtccggtatt aactgtgagg taaataaaaa ggaatacaaa
     4681 ttgaacctaa ttgtaatcag acgtctaatc cttgcgataa ccatagtgat cttaagcgtc
     4741 atcttggtag cagtcatttt gggaaaaatt cattgaatag tttatttcaa ataaaccaag
     4801 aataatatta atttctactc cttatgttgt aaggtaagtt ttttatttaa agaaactaga
     4861 aattccaaat taggtcaatc tgaaaaacca tgttgatccc caaatgcata actgaatttt
     4921 cagtctagtt cgcatggatt tgaattgttg acaatacgat tcccgacagg ctcatatctg
     4981 aaattttgaa tttgtcagtc tcatattctt tttgcattaa ttaaattaaa atatcaagca
     5041 ctgtcaatca tagtttgcaa aatgaaagca aattttgatt ctcgtaaaat tgatgaacaa
     5101 aaacttagcg aatttatgct aaaagcaatg ggagatgtta caagcacgat aagtgcaatg
     5161 cttgtaatca ttggggatag acttcattta taccaaacca tggcgaaatt aggacggccc
     5221 attacatccg aagagttagc gaaaacgacc aacactagtg agcgtcttat tagagaatgg
     5281 ttagcgaatc aagctgctgg tggatatata atatatgatc caccaaatag gaaatattct
     5341 cttccaccag aacaagcaat ggcattagca gatgagaata gtcctgtgta tatactggga
     5401 gcctatcaag caataagatc ctattttaag gatgaagata aattcgtaga aatgttcaaa
     5461 agtggaaaag gaatgaaatg gggagagcat catcatgatc tctttgaggg tagcgcgcta
     5521 ttttataagc ccaattacgt cggaaatctg gtaagttcat ggattccatc ccttgatgga
     5581 gttaaagaaa aactacaaca tggagccaaa gttgctgaca ttggatgtgg atatggtata
     5641 tcaacaattc ttatggcgaa ggcttatcca aattctagat tttatggttt tgataaccat
     5701 ggtccttcta tagaaagagc taaagaccaa ataaggaagg aagaagaaac aggaggagta
     5761 agcataaata atgtggaatt tgtttctgtc aatgcaaacg atgagtcaat tggtaatgat
     5821 tacgatctaa ttaccttttt tgattgtcta catgatatgg gagacccttt aggagctatg
     5881 aaatttgcaa ggcaatcact taaagccggt ggaacatgta tgattgtaga gccaatggct
     5941 aacgacaagt tagaagagaa ccttaacctc gtgggaagag cattttacgc agcgtccacc
     6001 cttgtatgtg ttccaaattc tctggctgag aacggtccag cattgggcgc ccaggcaggc
     6061 gaaaagaaaa taagtgagat agtaaaagca gcggagttta caatatttag gcgtgctact
     6121 cagacaccat ttaatataat ttacgaggca aaaccttagt tttcaataca aacttaccac
     6181 taagggacaa gaattcgcat aatctggtta gtcatcggat ctcttttaga gtcgaaattc
     6241 atactaacta ttgaccgctt taaatttcaa gtttttctag ataggatttg aacaacaaca
     6301 atttcaatta aagctagtca tttctgagac taatgatcat tttctcacag tgctcgtctg
     6361 tccaaacccc tactccttgt agcttccctt tccattttcc atcagtttta tctacgcaaa
     6421 catctgtcat tgaattgaaa tacgcctctg ttacttcagc gttattattt ttattagcat
     6481 tcttggttgc ttcggtaaaa tttacattac ttatagcata ccccgcattg ttcttcaaat
     6541 cattaacata ttccttttct aattgtacat catcctttgt accaatgcca tgtcccgaaa
     6601 cgtacacatc aaaatcataa tctagcactt tatcatatga ttgaatgtaa gaaggtacat
     6661 gtggtgtgac tgcaagatgt ttccagggtg ttcctcctgg agaaaattga tccactgcca
     6721 ttaatatctt atgttgtgga gaataaatga aaatatttcc attttgatga taaggtccac
     6781 tatatgctaa ctgcaaagtc gtatttccta gagttattgt tgtttcatta tcaaatattt
     6841 gtgttggtaa cggtctgtct gtatcgttag ccattttcaa gaaatttaat gtatcttttt
     6901 gtgcaattat ttctatacct gcaggaagta catgagctcc tcctatatga tctttatgcg
     6961 catggctgta cac
//
LOCUS       DASUMD010000059         9867 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_13678, whole genome shotgun sequence.
ACCESSION   DASUMD010000059 DASUMD010000000
VERSION     DASUMD010000059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 9867)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9867)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9867
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13678"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..428)
                     /locus_tag="VFX26_01525"
     CDS             complement(<1..428)
                     /locus_tag="VFX26_01525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase dimerization
                     domain-containing protein"
                     /protein_id="HEX5573186.1"
                     /translation="MSNSANSGINPFKVALTQLDEVSSMIGLDKGLHQFLAQPKRVLT
                     ISIPVKMDDGTIKVFTGFRSQHNDALGPFKGGIRYHPQVTIDEVKALSMWMTWKCAIA
                     NIPYGGGKGGIICDPKSMSEGELERMTRRYAYGISDIIGP"
     gene            complement(506..814)
                     /locus_tag="VFX26_01530"
     CDS             complement(506..814)
                     /locus_tag="VFX26_01530"
                     /inference="COORDINATES: protein motif:HMM:NF014470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HEX5573187.1"
                     /translation="MNIGGSEWIIIGLLVVILLFGSKKLPEFSRTIGKAIGEFEKVRT
                     MSLKQKIDDDSNYIGPRMASAVESERHKLEMIAESLGIDHVNKNDEELRLLIFEKINR
                     "
     gene            1037..1471
                     /locus_tag="VFX26_01535"
     CDS             1037..1471
                     /locus_tag="VFX26_01535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573188.1"
                     /translation="MIHKRDEIALNIREFIESLNHECKAGAVVAVEGKKDEIALRDLG
                     FQGEILVYNNFKGITNFVDYVSRNGRKVILLLDRDKKGRTLTSKIFKKLNLLCPHDSL
                     YYKKWFVKMTHGKIMCVENLSSYCLPVAENYSKFAFESRAVI"
     gene            1505..2743
                     /locus_tag="VFX26_01540"
     CDS             1505..2743
                     /locus_tag="VFX26_01540"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0006534 - cysteine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HEX5573189.1"
                     /translation="MQRSIVDSYALRNDFPIFKKKINGKELVYLDNASTTQKPYSVID
                     SITDFYTNYNSNIHRAVYQLAEEATELYEQSREKIANFINVRPEEIVFTRNTTESINL
                     IAHSWARSNLKKDDGIVLTELEHHSNIVPWQILCQEIGTRLEYVGIDENGFLDLEHMK
                     KLISSKKVKLVSLSHMSNVLGTIVPIEGIIKVAHEHGIPVIVDGAQSVPHMPVNVKNM
                     DCDFLVFSAHKMLGPTGVGVLYAKKEFLEKMRPFMGGGDMIKEVFKFYTNYNDVPYKF
                     EAGTPNIADVVGFGAAIDYLEKIGMENIRKHEISLTDYALESILSLKYVTVYGPRDTK
                     YRGGVMSFNIADIHPHDLATIMNDHGIAIRSGHHCAQVLMQRLDVPATSRASFYIYNT
                     KEEIDKFVNAIKEAGRIFKI"
     gene            2740..3168
                     /locus_tag="VFX26_01545"
     CDS             2740..3168
                     /locus_tag="VFX26_01545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018039412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system NifU family Fe-S cluster assembly
                     protein"
                     /protein_id="HEX5573190.1"
                     /translation="MSDDIYREIILDHYRNPRNKGKLENADVTVHDSNPLCGDEIDIH
                     LKVDGGVIKDVKFEGKGCAISQASASMLTELVIGKDLTVVKDLKKEDILENIGLTNLG
                     PARIKCALLSLKVLKVGMVKYYSENDPKSAEQIENESSPY"
     gene            3441..3929
                     /locus_tag="VFX26_01550"
     CDS             3441..3929
                     /locus_tag="VFX26_01550"
                     /inference="COORDINATES: protein motif:HMM:NF025736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEX5573191.1"
                     /translation="MINLIFLAIVFTIIRRTRKMGMILMITIVTIAILVSYMKPLIAQ
                     PKPPESQRIPNLPEGFQLESDSLLTEARNFSYPSNHTAIITAFAFIVATILRLKRKKY
                     AYLLWILPPMLMVSNLFLGLNYLTDLIGGLLLGLIISITMSNVLKLEVPFVVNKFKNT
                     SQ"
     gene            complement(3955..4278)
                     /locus_tag="VFX26_01555"
     CDS             complement(3955..4278)
                     /locus_tag="VFX26_01555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573192.1"
                     /translation="MNSTQLVNFPAKLTYKISDVSEIRPMIDEFIDQYRRSESGEFSC
                     RILLPRHLKSERDVKRLGAAIYSEIMLSLKKNQLIANLRDIRYIHDAHNYGWLLLNPK
                     MAEKL"
     gene            4394..6106
                     /locus_tag="VFX26_01560"
     CDS             4394..6106
                     /locus_tag="VFX26_01560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase I"
                     /protein_id="HEX5573193.1"
                     /translation="MTISSKVATSNKWTELEHNGVAFPPEYAQRGINVKILGEILFLN
                     REQEEPIYAWAKKKDTHYVKDPVFQSNFIADFKKLLPERFRSVQKIDEIDMTEAFNLV
                     DKELKIKEDEKIRIKSLPREEKRRISQEKKIEKEKMKSIYGKAKIDGIEVDVANWLVE
                     PPGIFMGRGLHPLRGRWKPRITPNDVTLNLGENASVPEGPWKAIVHDHNSTWLASWIE
                     NLTGKRKYVWLHDSSYLRQDNDKAKYDIAKKLEHYIFAIEKEIINQMLNAKDTTKRKV
                     ATVCYLINKLAMRVGDEKDPDEADTIGASTLRVEHLNFPKINDKVLIEFNFLGKDSVP
                     WQKTLEISSSDTKALYENLLFFMKGKDRTEEIFEDITSSKVNKFLRSIDNENLPNLTA
                     KVFRTYIATAVVKKHLSAPNLKLSKSESEFKKVYLAKIANLQAAVTCNHKKGIDPKNP
                     ASKKAWEKFEQSLANKKDKIKQLKLELKEKKWKTELQKLKKEQRIEKLEFQLRLQQET
                     KDYNLGTSLRNYIDPRVFKSWCEYVDLDWTKIYTSTLQRKFKWIEQYSKNDLKKYLNI
                     NNTI"
     gene            6255..7649
                     /locus_tag="VFX26_01565"
     CDS             6255..7649
                     /locus_tag="VFX26_01565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573194.1"
                     /translation="MLIVLMVFVFLSGGVFDLGFSQIQYQVNSVFIGILSNGDSIVQY
                     DLRLKNNTNEITLPLVGGNINDILVRNYLSKYLAYTFNSVTNEIKINSQNESQIRITY
                     QTPDLVNKQEREWSFLINSAFPFTVKLPNDAVVTNLGEQSPSLIRKLGGQNLLSFDKG
                     RISIDYVIGYAGTREQAIISINSAELDVAKAESEHTGINLGDVKEILHNAKTALNQSN
                     FIDAERLANNASDLSGIITESFETSKDTMSNATRKIEDLQGMNVETSQASEFVSKSNI
                     EFSQGNYPKALEYATLALNSLEPPRQEQLFLNSSSTLYFLLIPLAVSVGFFMMRKYRR
                     KFNPHIQSSSFKIDPLKSDTSTNKLKENNFIEKQFPINKQTGNESSTDNSDLHNLLVD
                     IIKQKGNLKPEEKEILFYISEKEGAAFEGEIRNKFILPKTSLWRLIKRLERENLIEVT
                     KIGGQNLIKLKFQK"
     gene            complement(7665..8483)
                     /locus_tag="VFX26_01570"
     CDS             complement(7665..8483)
                     /locus_tag="VFX26_01570"
                     /inference="COORDINATES: protein motif:HMM:TIGR01486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIB family hydrolase"
                     /protein_id="HEX5573195.1"
                     /translation="MEKVIFTDIDGTLLDSRFPNMNKMKELVGMTSQNGIHLIFCSSK
                     TELEQNKIKSELYLHEPYIVENGGATIIPINYFKKTKITNSRISQNNYIIETGGPATK
                     IRSLLKKIKYKYDIDFKGVSDLTVSELSKITKLSQEYASRMMDRKYSETIVQINNMKI
                     TDFAKIIEKEGLNIIPGNQYFDITLGNDKGTGVNILIDAFRKEYTNNVIFFGIGDSRN
                     DEPMLTLVDIPMLVQKFDGNWENLRIGSLQKINAVGSKGWEIALELILKYYDKP"
     gene            complement(8696..9325)
                     /locus_tag="VFX26_01575"
     CDS             complement(8696..9325)
                     /locus_tag="VFX26_01575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573196.1"
                     /translation="MEKSLDSPEFFKLGITIIYAIVIALSIDASKTVFIPFYSIPTNL
                     INATILFYGYFIIITGWIEYYFNMQKYQEVKKSGLGGFVIELGILFLFYYIIIAASSE
                     NSGYLIPDVFLFITPLIFLLLTLKDMYGVSNYQNENLVKYRNLSRNFLFVSVIISLSY
                     IAETYATGFQSFGALAFYRDLIFAFLIITLVVIYRILRWREINSAPSNS"
     gene            complement(9447..9755)
                     /locus_tag="VFX26_01580"
     CDS             complement(9447..9755)
                     /locus_tag="VFX26_01580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573197.1"
                     /translation="MADLDEFTKLLLDKIINNVISCLPMIENMFKDQNKELGKDIGIA
                     NRKDFILGAVWCIILEKYVITCYLHTGKTINYENGMEISRYVLNKISKSDLLMSINNG
                     "
BASE COUNT         3478 a         1626 c         1684 g         3079 t
ORIGIN      
        1 tacggtccaa taatatctga aattccatat gcataccttc tagtcattct ttctaattct
       61 ccttctgaca tactttttgg atcgcatatt ataccacctt tccccccacc atatgggata
      121 tttgcaatgg cgcacttcca tgtcatccac atagaaagag ctttaacttc atctattgtt
      181 acctgaggat gataacgtat tccgcctttg aatggtccta aagcatcatt atgttgagaa
      241 cgaaaaccag tgaaaacttt aatggttcca tcatccattt taacagggat agatatcgtc
      301 aacacccttt ttggctgagc caaaaattga tgcagacctt tgtcaagacc aatcatagat
      361 gaaacttcat caagttgagt aagcgccact ttaaatggat tgattccact atttgcagaa
      421 tttgacatta cgtgagttga aaaaatcaca tatttaaatt ttgaaaggta acatctaaaa
      481 aaacaatttt acagcaatgt taaagtcatc tgttaatttt ttcgaaaatg aggagcctta
      541 attcttcatc atttttattg acatgatcta tccctaacga ctctgctatc atttcgagtt
      601 tatgacgttc actttccaca gcactagcca tccgtggccc aatgtaattg gaatcatcat
      661 cgattttttg cttaagcgac atagtgcgaa ccttttcaaa ttccccgata gcttttccta
      721 tggttctaga gaattcaggt aatttctttg aaccaaatag gagaataact acaagtagtc
      781 ctataattat ccattctgaa ccaccgatgt tcatcaggta attttcaaac atgtgaatat
      841 tttaattcaa atgaaatgaa aaataagtct ttgctaagac tcatttggtg acattagtgt
      901 tttgatacaa tttgacgtgg cgatcctttt agagaatcat gaattcaaat tgtttgccta
      961 ttaagagtac ctgaaaaaaa ccttgcgata tcaagacaaa attcattaac gttggattgg
     1021 taattcaatt cagtagatga tacacaaaag ggatgaaatt gccctaaata ttcgagagtt
     1081 tatcgaatca ttaaatcacg aatgtaaagc aggagcagtt gtcgcagtgg agggtaagaa
     1141 ggatgaaatt gccttgagag atttaggatt tcagggtgaa atcttggtat ataataattt
     1201 taagggaatt actaattttg tagactatgt atcaaggaat ggtagaaagg tcatactttt
     1261 gcttgataga gataaaaagg ggagaacctt aacctcaaaa atctttaaaa aactaaacct
     1321 gttgtgtcct catgacagtt tgtattataa aaagtggttc gtgaagatga ctcatggtaa
     1381 gattatgtgt gtcgagaacc tatctagcta ttgtttaccg gttgcagaaa actattccaa
     1441 atttgctttc gagtcaaggg ccgtaatcta agtttatatc tcttattact tattttaaaa
     1501 attgatgcaa agaagcattg tagacagcta tgcattaaga aatgattttc caatttttaa
     1561 gaaaaaaatc aatggcaagg aacttgttta tctagataat gcttctacta cacaaaaacc
     1621 atattctgtg attgattcaa ttacggattt ttatacaaat tataattcca atatccacag
     1681 agcagtctat cagctagccg aagaggcaac tgaattatat gagcaaagtc gcgagaaaat
     1741 tgcaaatttt attaacgtac gtcctgaaga aatcgtcttt acgaggaaca cgacagaatc
     1801 aataaatctt attgcacatt cttgggccag atcaaatctc aaaaaagatg atggcattgt
     1861 tctcaccgaa ttagaacacc atagcaatat agtaccctgg cagatactat gtcaagagat
     1921 tggaacacga ttagaatatg ttggaattga tgaaaacgga tttttagatc ttgaacatat
     1981 gaaaaaattg atttcttcaa aaaaagtaaa actggtttcc cttagccata tgtcaaacgt
     2041 actgggcacc attgtaccaa ttgaagggat tattaaggta gcccatgaac atggcatacc
     2101 agtcatagtg gatggtgcac aatcagtacc acatatgcct gtaaatgtta aaaatatgga
     2161 ttgtgatttc ttggtattct ctgcacacaa gatgttaggt cctactggag tgggagtctt
     2221 atacgcaaaa aaagaatttc ttgagaaaat gagaccattt atgggtggtg gcgatatgat
     2281 taaggaggtc tttaaatttt acacaaatta caacgacgtc ccttacaaat ttgaagcagg
     2341 tactccaaat attgctgacg ttgtaggatt tggtgcagct attgattatc tagaaaaaat
     2401 tggaatggaa aacatcagga aacatgagat aagtctgaca gattatgcac tagaatcaat
     2461 tctgtcacta aagtatgtta cagtatatgg cccaagagat accaaataca gaggaggagt
     2521 tatgtcattt aatattgcag atatccaccc tcacgatctc gcaacaataa tgaatgatca
     2581 tggaattgcg ataagatccg gtcatcactg tgcacaagta ttaatgcaaa gacttgacgt
     2641 tccagcaaca tctagagcaa gcttttacat ttataatact aaagaagaaa tagataagtt
     2701 cgttaatgct attaaagagg cagggagaat cttcaaaata tgagcgatga tatatacaga
     2761 gagatcatat tagatcacta caggaatcca agaaataaag ggaaattgga gaatgcagat
     2821 gttacagttc atgatagtaa ccctctttgt ggtgatgaaa tagatattca tttgaaggta
     2881 gatggagggg tgatcaaaga cgtaaaattt gaaggtaaag gatgtgcaat tagccaggct
     2941 agtgcttcta tgttaacaga attagtcatt ggtaaggatt tgactgtagt caaggatttg
     3001 aaaaaggaag acattcttga aaatattgga ttaacgaact tggggcctgc aagaatcaaa
     3061 tgcgcactcc tttcgctcaa ggtactaaaa gtaggaatgg tgaaatacta ttcagaaaat
     3121 gatccaaaat cagcagaaca aattgaaaat gaatcttcac cctattgacc aatgttgtaa
     3181 ctaatgagca gcgctttttt gatttatttt caataataac tatgtccaat tagatggcta
     3241 aaattattcg gtaatcatga ttgatacata ttcgatcatt tcaatttata gcaatcttag
     3301 ccgcattcat gatacttacg gttttagtcc atttccggta tttttcgtca atagatgttt
     3361 tagtctttaa tgcatttggc agtgttagtc ctgaccaatt tttatcctat tttttcgtaa
     3421 tcatttcatc ttttggagag gtgataaacc tgatttttct ggccatagtt tttaccatta
     3481 ttagaagaac gagaaaaatg ggaatgatat tgatgataac aatcgtgact attgcaatac
     3541 tggtttctta tatgaaacca ctaattgccc agccaaaacc accggaatcg cagaggatac
     3601 ccaaccttcc cgagggtttt cagcttgaaa gtgatagttt attgacggag gcccgcaatt
     3661 tctcctaccc ctcaaatcac acagctatca taaccgcatt tgcctttatt gtcgcaacta
     3721 tcttgcgact aaaaagaaaa aaatatgctt atcttctctg gatactgcca ccaatgctaa
     3781 tggtgtcaaa tttatttcta ggattaaatt atttgactga tttaattgga ggtttactac
     3841 taggcttaat tatttcaata actatgagca acgtcttaaa actcgaagtc ccgtttgtgg
     3901 tgaataaatt caaaaatact agtcagtaac caaaatccaa aatccttgcc ttatctacaa
     3961 tttttctgcc atttttggat tcaacagtaa ccagccataa ttatgggcat cgtggatata
     4021 tcttatatct cttaaattgg caattaactg gttttttttc agcgaaagca ttatctcaga
     4081 atatatggca gcacctaatc ttttcacatc tctctcggat ttcaaatgac gtggtagtaa
     4141 aattctacaa ctgaattctc ctgattcgga ccttctatat tgatcaatga attcatcaat
     4201 catcggccta atttcagaga catcacttat tttgtaggtg agctttgcag gaaaatttac
     4261 cagttgagtt gaattcatat catatctatt ccagcagaat aaataaataa atcaattgtc
     4321 cagttcaaaa cttgtgatag atatttcaag cggataaggt ttaagaatag ttaattagac
     4381 attttggatg tagttgacaa tatcctctaa agttgccacc tctaacaaat ggacagaact
     4441 ggagcataat ggtgtcgcct tcccaccaga atatgctcag cgtggaataa atgtcaaaat
     4501 tctaggagag atccttttct taaatcgtga acaagaagaa cccatttatg catgggcaaa
     4561 aaagaaggat acccattatg taaaggatcc tgtttttcaa tcaaatttta ttgctgattt
     4621 caagaaatta ctccccgaac gatttagatc ggttcaaaaa attgatgaaa ttgacatgac
     4681 cgaggcattt aatttggttg ataaggaatt aaagattaag gaagatgaaa aaataagaat
     4741 aaaatcactt ccaagagaag aaaaaagaag aattagccaa gaaaaaaaaa tagaaaagga
     4801 aaagatgaaa tcgatttatg gaaaagcgaa gatagatgga atcgaagttg acgttgccaa
     4861 ttggcttgtt gaacctcctg gaatatttat gggaagggga cttcatccat taagaggaag
     4921 atggaagccc agaattactc ccaatgatgt aacactcaat ctgggggaga atgcatctgt
     4981 acccgaagga ccgtggaagg ctattgttca tgaccataat tcaacttggt tagcctcatg
     5041 gatagaaaat ctaactggga agagaaagta cgtctggttg catgattcat cctacctacg
     5101 acaagacaac gataaggcaa aatatgacat agcaaagaaa ctagaacatt acatttttgc
     5161 tattgaaaag gagattatta atcagatgtt aaacgctaag gatacaacaa aaagaaaggt
     5221 cgctacggtt tgctatctca taaataaatt ggcaatgaga gttggtgatg aaaaagatcc
     5281 tgacgaagca gacacaattg gtgcgtctac tctcagagtt gaacatctca actttccaaa
     5341 aattaatgac aaggttctaa tagaattcaa ttttctcggc aaagatagtg ttccttggca
     5401 aaagacgttg gaaatatcca gttctgatac aaaagcgctt tatgagaatt tgctgttctt
     5461 catgaaggga aaggatcgaa ctgaggaaat atttgaagac atcacatcgt ctaaagtaaa
     5521 taaattcctc agatcaattg ataatgaaaa tctccctaat ttgactgcaa aggtatttag
     5581 aacttacata gctactgcag tagtgaagaa acatctatct gcgccaaatt tgaaacttag
     5641 taagagtgaa agtgaattta agaaagtata cttagcaaaa attgcaaatc ttcaagccgc
     5701 cgtaacttgt aatcacaaaa aaggaataga cccgaagaat ccggcaagca aaaaggcatg
     5761 ggaaaaattt gaacagtcat tagctaataa aaaagataaa atcaaacaac taaaacttga
     5821 gttgaaagag aaaaaatgga aaactgagct acagaaatta aagaaggaac aaagaattga
     5881 aaagcttgaa ttccaattac gactccaaca agaaactaaa gattacaatc tcggtacttc
     5941 attaagaaac tatatagatc cacgcgtttt caaatcatgg tgcgagtacg tagatttgga
     6001 ttggacaaaa atttatacaa gtactcttca gagaaaattc aaatggattg aacagtactc
     6061 aaaaaatgat ttaaaaaaat atctgaatat caataataca atctaactaa tcatatgaat
     6121 attaatctca aactttttat gatttgcgat ttatctggcc tgccagaatt atgtcacgaa
     6181 cacaatagtg gtaatttgag aatcgataag tctttctctt atttgaggtc gtttttatat
     6241 tgagattggt ggtgttgtta atcgttttaa tggtatttgt tttcttatct ggcggtgttt
     6301 ttgatttagg gttttcccag attcagtatc aagttaactc tgtatttatt ggtattttgt
     6361 caaatggtga ttcaattgta caatatgatc ttcgtttgaa aaataatact aacgaaatta
     6421 cactgccatt agttggcggc aacattaacg acattttggt gagaaactac ttgtcaaaat
     6481 atttggcata tacgttcaat tctgtaacca atgaaataaa gattaattca caaaatgaat
     6541 cacagataag aattacctat caaacaccgg atcttgttaa caaacaggaa agagaatgga
     6601 gctttcttat aaattctgct tttccattta cagtaaaatt acccaatgat gcagtagtaa
     6661 ccaatttagg agaacagtca ccatcattaa ttagaaaatt aggaggacag aatttattat
     6721 cattcgataa aggaagaatt tctatagatt atgttattgg ttatgcagga acacgagaac
     6781 aagcaataat atctataaat tcagcagaat tggatgtggc aaaagcagaa agtgaacaca
     6841 caggtataaa tctaggcgat gtcaaggaaa ttctccataa cgcaaagact gcattaaatc
     6901 agagtaattt tattgatgca gaacgtcttg caaataatgc cagtgattta tcaggaataa
     6961 ttacagagtc atttgaaacc tccaaggata cgatgagtaa cgccactcgt aaaatagagg
     7021 acttgcaggg catgaatgtt gaaacttcac aagcatcaga atttgtttca aaatcaaata
     7081 ttgaattttc tcagggaaac taccctaagg ctctagagta tgccactcta gctttaaata
     7141 gtctagaacc tccaagacaa gaacaattat ttctgaattc aagttccaca ctatatttcc
     7201 tgttaattcc actcgcagta tcagttggat ttttcatgat gcgaaaatac agaagaaaat
     7261 ttaatccaca tatacaatca tcttcgttca aaatagatcc tttgaaatcc gatacttcaa
     7321 ccaataagct taaagaaaat aattttattg aaaaacaatt ccctatcaat aaacaaacag
     7381 gtaacgaatc ctctacagat aattcagatc tgcacaactt gcttgttgat attatcaaac
     7441 aaaaaggaaa tttgaaacca gaggagaagg aaatactatt ttatatttct gaaaaggagg
     7501 gagcagcatt tgaaggagaa attaggaata aattcatact tcccaaaacg agtttgtgga
     7561 gattaataaa gagacttgaa cgggaaaacc tgattgaagt aacgaaaata ggaggacaga
     7621 atttgatcaa acttaaattt cagaaataat atagaatcaa acaattatgg tttgtcataa
     7681 tatttaagaa taagttcaag agcaatttcc catccctttg aacctacagc atttatcttt
     7741 tgtagactac ctattcgtaa attttcccaa ttaccatcaa atttttggac taacatggga
     7801 atatccacta gggttaacat tggttcatca tttctgctat caccaatccc aaagaagata
     7861 acattatttg tatattcttt acgaaaagca tcaattaaaa tatttacacc tgttccctta
     7921 tcgttaccta gagtaatatc aaaatattga tttcctggta tgatatttag gccttctttt
     7981 tcaataattt ttgcgaaatc tgtaattttc atgttattta tctggacgat tgtttcacta
     8041 tatttcctat ccatcatcct gctagcgtat tcttgagaga gtttagtaat tttcgaaagt
     8101 tcagatacag taagatctga tactccttta aagtctatat catatttgta cttaatcttt
     8161 tttaaaagag atctgatttt agttgcgggt ccgccagttt caataatgta attattttga
     8221 gaaatccttg aattggtgat cttggttttc ttaaaataat ttattggaat tattgtagcc
     8281 cccccattct ctacgatata tggttcgtgt aaatacaatt ccgatttgat tttattttgc
     8341 tctagttctg tttttgaaga acaaaatatc agatggatac cattttgtga agtcattcct
     8401 accaattctt tcattttatt catatttgga aaacgagaat ctagtaatgt tccatcaatg
     8461 tcagtaaaga taaccttctc catagtacat attaggctag ttaattcctt ctttataaat
     8521 agacataatc agacaagtag taattatacc caaaattcaa tatttttgga ttttatgcca
     8581 ttttatactt caagtacaac aatgattgca aatttgaaaa aaggcatttc acaagagtgt
     8641 tatattcaag ttcaatacag gaaatccttt agcctttaaa tctaaacttt ctcaatcagg
     8701 aatttgaagg agcagaattg atttctcgcc atctcagtat cctgtagata acaactagtg
     8761 taataatcaa gaatgcaaat atcaagtctc tatagaatgc aagggcccca aaagattgaa
     8821 agcctgttgc atatgtctca gcaatgtaag ataaagaaat tatgacagaa acaaaaagaa
     8881 agttcctaga caaattccta tacttgacta aattttcatt ttggtagtta ctaactccat
     8941 acatatcttt tagagtcaaa aggagaaaaa tcagaggcgt aatgaataaa aaaacatcag
     9001 gaatcaaata acccgagttt tcactacttg ccgcaattat gatataatag aacagaaaca
     9061 gtattcccag ctcaattaca aaccctccca atccagactt ctttacttcc tgatattttt
     9121 gcatattgaa ataatattca atccaacctg ttattatgat gaagtatcca taaaagagaa
     9181 tcgtcgcatt tatgaggttc gtcggtatag aatagaacgg aataaaaacg gtctttgatg
     9241 catcaatact taatgcaatt acgattgcat aaattatggt tatacccagt ttgaagaatt
     9301 ctggactatc tagacttttt tccaaattag aaaatgaatt tgtgcatccc gttaattaaa
     9361 ttttcatgaa agcgagacca gagaatatcg tcaagtatat cgcggcaggt tactcaaatc
     9421 attgtacatt caatagtgat ctttggttat ccattattaa ttgacattaa tagatctgat
     9481 ttcgaaattt tattcaaaac atatctactt atttccatcc cattttcata attaatagtc
     9541 ttaccggtgt gaagatagca agtaataacg tacttctcta agattatgca ccaaacagct
     9601 cctaaaataa agtcctttct attagcaatt ccaatatctt tgcctagctc tttattttga
     9661 tccttgaaca tattttctat catcggtaga catgagatta cattgtttat tattttgtcc
     9721 aatagtaatt tagtgaattc atccaaatct gccatattat gacaataatt ttgattccat
     9781 tttaagattt tctatgcaag ttgataaatg agctgcatag aaatatggaa gatcactttt
     9841 aaaactatca aaattagaaa taatatt
//
LOCUS       DASUMD010000060         5380 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1340566, whole genome shotgun sequence.
ACCESSION   DASUMD010000060 DASUMD010000000
VERSION     DASUMD010000060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5380)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5380)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5380
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1340566"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..685
                     /locus_tag="VFX26_01585"
     CDS             <1..685
                     /locus_tag="VFX26_01585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573198.1"
                     /translation="MSEADITTKKSISQPPLDLLFNPSVLSKKDVWEIDLSLLLEMLL
                     KLINNSGKKDLRMCGIAALSSSLIYRLKVESILRLEKISKIKKGVEDVDIQPIPNLKP
                     LEIPFRIEPTYPVSLEELLHVLENMINGLANPKPRRNQLNLESVETFNFDEYLVKFEK
                     ILQSYEDMIFDIVTADKSVEFKNLTVKMNSVEIVRCFIAMLYLAMKRKILVEQKDEEI
                     LITLNENID"
     gene            710..1222
                     /gene="scpB"
                     /locus_tag="VFX26_01590"
     CDS             710..1222
                     /gene="scpB"
                     /locus_tag="VFX26_01590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HEX5573199.1"
                     /translation="MPQSLPDAEITARIEAALYAAGRPLSISDLMRAAGINSKEKVVK
                     LLCELIKKTRNVLTALEIAQLDDDKFVFQVKPVYMPLIRRFAQQPLIPAGALKTLSFI
                     AYEQPITSKRLVQIRGSQVYTHLKELRAHAFIESERLGRMKIYRTSRKFQEYFGINDL
                     NVLKSKMILK"
     gene            1291..1677
                     /locus_tag="VFX26_01595"
     CDS             1291..1677
                     /locus_tag="VFX26_01595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8e"
                     /protein_id="HEX5573200.1"
                     /translation="MKKSIENLSGRKYTGGRKIAMRRRRKFEIDRYPNEAVIGSNVKV
                     TRRVRGDNSKTALKTVEFANVSNVEENKTTRSKILRVIKNTANKDYERRGVITKGTMI
                     ETELGLARVISRPGQVGLINAVQLKK"
     gene            complement(1750..2664)
                     /locus_tag="VFX26_01600"
     CDS             complement(1750..2664)
                     /locus_tag="VFX26_01600"
                     /inference="COORDINATES: protein motif:HMM:NF012702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573201.1"
                     /translation="MTFHDTYRNPLLKTSNLITPIIIGKVPSSNNSDLHVMSDRNLID
                     RLDKILALQINKIIIFGTPRLHDPRGSQAWNSKGIVQNTIRTIKSNFDKKIEIIADVC
                     VCQYNISGHCGIVNQDNQVDNDKTLKVMSKISLSYAESGADMVAPSSMMDGLVRSIRN
                     NLNINGFRDTKIMSFSKQFSCLYSPFRLTAFKKFSKIDKSTYQIGYSNSREMLRKIEL
                     DLREGADIVTIKPSLGNLDLISRIVDRVSCKIAVQHVSGEYEMLMAATRSRLIEEHEW
                     IIGYFTSMIRAGVNLIISYGAEEIAALI"
     gene            2790..3659
                     /locus_tag="VFX26_01605"
     CDS             2790..3659
                     /locus_tag="VFX26_01605"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEX5573202.1"
                     /translation="MTTVSIGIPSYNEELNIKTILESVILSNLNSIDLVEIIISDDST
                     DDTPIIVKQFMENHSKKIIFLHNDKRKGAANAWNNIIQNATGEIIVLYDADVMPEPNC
                     TLELVDKINNNVGLCASNPKPIADRGIPARSTIFVNEWLESVREKELSEYTVMGRGLS
                     IRSDIAKKITIPEGLIAIDLFIQSKVLGMGYDIVFNPNAIVLFKPAKTFVDFSSQIIR
                     AINGHNQLKKLRYNIKNHLSIKTALLEFFRVTMRNPIGALSTCLSYIMIPFYMTRIKN
                     ADSALWHTAQSTK"
     gene            3764..4369
                     /locus_tag="VFX26_01610"
     CDS             3764..4369
                     /locus_tag="VFX26_01610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573203.1"
                     /translation="MSDSSIASCGYICYPRDNNAQNLIEYWKNSDVVKDLYFATATFA
                     FESKPYFPNNSNHYILVKYAGLDKIVEGISKYQRSNSSLFLFSNETELFEKYHEKVSY
                     VSIYYTRYDQDNHELRDIAGILARRDMVVSAKLGNLKFMNNKKLPFIFPHADNIIILE
                     VEGKKSHQSDQNYCEKTRKDVARKGIPLTNLVSFSILEKLR"
     gene            4431..4823
                     /locus_tag="VFX26_01615"
     CDS             4431..4823
                     /locus_tag="VFX26_01615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-5A"
                     /protein_id="HEX5573204.1"
                     /translation="MSKPMDLGSLKVGSYIIIDNEPCRIVSYDHSKPGKHGSAKARVS
                     AISVFDGSKHSLVSPVSASVDVPLIDKRNGQIISISGQTFQVMDLETFEMFETSSVED
                     EIREKIMQGAEVEYWKVLERVKITRIKS"
     gene            complement(4885..>5380)
                     /locus_tag="VFX26_01620"
     CDS             complement(4885..>5380)
                     /locus_tag="VFX26_01620"
                     /inference="COORDINATES: protein motif:HMM:NF024258.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEX5573205.1"
                     /translation="DTHDDLPSLKNAIKKFNENRVSYVIHAGDYVFPGVVKEFKHLGG
                     KLIGVLGNNDGEKIGLVKNFQEIGGELHGEFCHLELDEFKIAIYHGTSNKLTEAIIAS
                     QMYDLVIHGHTHKKRDEKIRDTLVLNPGCAHREFPNIEGNIETEPSVIIFDTTKFDYQ
                     FVKL"
BASE COUNT         1863 a          920 c          943 g         1654 t
ORIGIN      
        1 catgtcagaa gcagacataa ctactaagaa aagcatatct caaccaccac ttgatttact
       61 tttcaatcct tcagtattat caaagaaaga tgtatgggaa attgatcttt cgttactatt
      121 agaaatgttg ttaaaactaa tcaataatag tggaaaaaaa gaccttagaa tgtgcgggat
      181 cgcagccttg tcatcctcat taatctatcg tttgaaggta gagagcattc tgcgactaga
      241 gaaaatctcc aaaattaaaa aaggagttga ggatgttgat atccaaccca ttccaaattt
      301 gaagccactt gaaattccgt ttaggataga acctacttac cctgtgagtc tagaagaatt
      361 attacacgta cttgaaaaca tgataaatgg actggcaaac ccaaaaccaa gacggaatca
      421 actcaatctg gaatctgtgg agacgttcaa ctttgatgag tacttggtga agttcgagaa
      481 gattttgcaa tcttatgagg atatgatttt cgatatcgta actgccgaca agtctgttga
      541 attcaagaat cttacggtca agatgaattc tgttgaaata gtcagatgct ttattgcaat
      601 gctatacctt gctatgaaaa gaaaaatact tgttgagcaa aaagacgaag aaatattgat
      661 tactttgaac gaaaacattg attaagaaag cttagttaca ttcacgcagg tgcctcaatc
      721 actcccggac gctgaaatta cagccagaat cgaagcagct ctatatgctg ccggtagacc
      781 attatccatc agtgacttga tgagggcagc tggaattaat tctaaagaaa aagtagtcaa
      841 attactatgt gaactaataa aaaaaacacg aaatgttttg accgctctag aaatcgcaca
      901 acttgatgat gataaatttg tgtttcaagt aaaacctgtc tacatgcctt taatcaggcg
      961 atttgctcaa cagccgctaa tccccgccgg cgcactgaaa actttatcat ttattgctta
     1021 tgaacaacca attacatcaa aaaggctagt tcaaatccga ggcagtcagg tttacacaca
     1081 tctcaaagag ttgagagctc atgcgttcat tgaatcggaa cgattgggac gaatgaaaat
     1141 atatagaaca agcagaaaat ttcaagaata ttttgggata aatgatctca acgtgctcaa
     1201 aagcaagatg attctaaaat aattttattg ctctttgatt acttaataga aaacctcata
     1261 atatggatca atttcactta tcatgcaatc atgaaaaaat ctatagagaa tctatccggt
     1321 cgaaagtata cgggcggcag aaaaatcgct atgcggagaa gacgcaaatt cgaaatagat
     1381 agatatccaa atgaagcggt cattggaagc aatgtcaaag taacaagaag agtacgcggc
     1441 gataacagta agactgcgtt aaaaactgtt gaatttgcaa atgtttcaaa tgtggaagag
     1501 aacaaaacta caaggtcaaa aatacttaga gttatcaaga acacagctaa taaggactac
     1561 gaaagaagag gagtaattac taaaggcacc atgatagaaa ctgaattagg tttggcaaga
     1621 gtaatatcaa gacctggtca ggtaggtctt atcaatgctg tccagttaaa gaaataaaat
     1681 cagttgaatc aagattatct taaatccaac atcaaatcgt tcattttgga acaaaagaat
     1741 tctatcgact taaatcaagg cagctatttc ttcggcccca tatgatatta tcaagttaac
     1801 tcctgctctt atcatagatg taaaatatcc tataatccat tcatgttctt cgataagtct
     1861 actgcgagta gcagccatta gcatttcata ttctccagat acgtgttgaa cagctatttt
     1921 acaactgact ctatcaacaa ttctgcttat caaatcaaga ttacctaatg atggctttat
     1981 tgttacaata tctgctccct cacgtaaatc taattctatt tttctcaaca tctctcttga
     2041 attagagtat cctatctgat aagtagactt gtcgatcttt gaaaatttct tgaaggcggt
     2101 caaacgaaag ggagaataaa gacaggaaaa ctgttttgaa aaggacatta ttttggtatc
     2161 tctgaatcca ttaatgttaa ggttgttcct aatagaccgt accaatccat ccatcatcga
     2221 agatggtgca accatgtctg caccagactc agcatagcta agggaaatct ttgacatcac
     2281 ctttaaagtc ttgtcgttat ctacttggtt atcttgattt actattccac aatggcctga
     2341 tatattatac tgacaaacac aaacgtcagc aattatctcg atctttttgt caaagttact
     2401 ttttatagtt cttattgtgt tttgaacaat ccccttacta ttccatgctt gcgatcccct
     2461 tggatcatgt aatctgggcg tcccaaaaat aattatcttg ttaatttgta aagctagaat
     2521 tttgtcaagt ctatctatta ggttcctgtc agacataaca tgaaggtcgc tattattgga
     2581 ggaggggact tttcctatga ttattggagt aatcaaatta ctcgttttca aaagggggtt
     2641 acgataggta tcatgaaagg tcaattctta atttatgatt ttttacgaat atatgcatat
     2701 tcaaccaaat ccaaaatatt gatgtcatga tacattatta atcgaaatat atgaagagta
     2761 aaatatgtta ctttgtaaat tagaggagtt tgaccactgt atctattggg attccgtctt
     2821 acaatgaaga attaaatatc aaaacaattt tggaaagtgt gattctttca aatctgaatt
     2881 caattgacct tgtcgaaatc ataatctctg atgattcaac tgatgatacc ccaattatcg
     2941 ttaagcaatt tatggaaaat cattcaaaaa agataatctt tcttcataat gacaagagaa
     3001 aaggagcagc aaacgcttgg aacaacataa tacaaaatgc gacgggtgaa ataattgtcc
     3061 tatatgacgc cgatgtgatg ccagaaccaa attgtacttt ggaattagtt gacaaaatca
     3121 ataataatgt gggtttatgt gcgtcaaatc caaagcctat tgcagatcga ggaattcctg
     3181 caaggagtac aatttttgtc aatgaatggt tggaatcagt aagagaaaaa gaactttctg
     3241 aatatactgt aatgggtaga ggcttatcta tacgctctga tattgctaaa aaaataacta
     3301 ttcccgaagg cctaattgct atagatctat ttatacaaag taaagttttg ggaatgggct
     3361 atgatattgt ctttaacccg aatgcaattg ttctattcaa accagccaag acgtttgttg
     3421 atttttcttc acagataata agagcaatta atggccacaa tcagttgaaa aagcttcgat
     3481 acaatataaa gaatcatctt tccataaaaa ctgccctttt agaatttttt cgtgtcacaa
     3541 tgagaaaccc tatcggggcc ctttctacct gcttatctta tatcatgatt ccgttctata
     3601 tgacgagaat caaaaatgca gactctgcat tatggcatac tgcacaaagt acaaaatgaa
     3661 tacgggtaaa atgtttagaa tttctaattt tttatcaaaa gtctgacttg aatgacaaaa
     3721 ataaaaatgg tataaataat gctcttcaat tacgattcta gacttgagtg atagttcaat
     3781 tgcatcttgc ggatacatat gctatccaag agataacaat gctcaaaatt tgatagagta
     3841 ttggaagaat tctgacgttg ttaaagattt gtatttcgct acggctacat ttgcatttga
     3901 aagcaagccg tatttcccga ataattcaaa tcattatatt cttgtcaaat atgccggtct
     3961 tgataaaatt gttgaaggga tttcaaaata tcagcggtca aacagctctc ttttcctctt
     4021 tagtaatgaa acagaattat tcgaaaaata tcatgagaag gtaagttatg tctcaattta
     4081 ctatacaaga tatgatcaag acaatcacga actaagagat atcgcaggta ttctagcaag
     4141 aagagatatg gtcgtaagcg caaaattagg aaatctgaaa tttatgaata acaagaaatt
     4201 gccatttatt tttccacatg cggacaatat cataatttta gaagttgaag gtaaaaagag
     4261 tcatcagagc gatcaaaact attgtgaaaa aacaagaaag gatgttgcaa gaaaagggat
     4321 tcctctaact aatcttgtaa gcttctcaat tttggagaaa ttaagataat acggttttga
     4381 tcaatcagaa ccgttaaata tgaagcaatt ttctactttt tcgaccaata ttgagcaaac
     4441 cgatggattt ggggagccta aaagtaggtt cctatataat tattgacaac gaaccatgtc
     4501 gaattgtatc atatgaccat agcaagcctg gaaaacatgg ttctgcaaaa gcgagagttt
     4561 ctgcaatatc agtattcgat gggtcaaagc atagtctcgt ttcacctgtt tctgctagtg
     4621 tggatgttcc actaatagac aagagaaatg gtcaaatcat ttccatttcc ggacaaacat
     4681 ttcaagtaat ggatctagaa acattcgaaa tgtttgaaac ttcgtcagta gaagatgaaa
     4741 tacgagaaaa aattatgcaa ggagcagagg ttgaatattg gaaagttctc gaaagggtaa
     4801 aaataactag aataaaaagc tagtcctgtc taaagtcaaa ttattgaaat aagaaattac
     4861 tgcctagagt atcatctgat ttaattataa tttgacaaat tgatagtcaa actttgtagt
     4921 atcaaatatt atgaccgatg gttctgtttc aatatttcct tctatgttgg gaaactctct
     4981 gtgtgcacaa ccagggttta gaaccaatgt atcgcgtatt ttttcatctc gtttcttatg
     5041 agtatgtcca tgaatgacca aatcgtacat ttgacttgcg ataatagctt cggtcaattt
     5101 attactggtt ccatgatata tggcaatttt gaattcatct aattcaaggt gacaaaattc
     5161 tccatgcagc tctccaccaa tttcttgaaa atttttcacc aatcctattt tttccccatc
     5221 attgtttcca agtactccta ttaatttccc gcccaagtgt ttgaattcct ttactactcc
     5281 ggggaaaaca taatctccag catgaattac atagctgact ctattttcat taaatttctt
     5341 tatcgcattt tttagactgg gcaggtcatc atgagtatcg
//
LOCUS       DASUMD010000061         6067 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_13788, whole genome shotgun sequence.
ACCESSION   DASUMD010000061 DASUMD010000000
VERSION     DASUMD010000061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6067)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6067)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6067
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_13788"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..213)
                     /locus_tag="VFX26_01625"
     CDS             complement(<1..213)
                     /locus_tag="VFX26_01625"
                     /inference="COORDINATES: protein motif:HMM:NF014080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX5573206.1"
                     /translation="MLYVQNIKKVHMIKRPNDIPNYLELVANLEEFGLSKYESMAYIT
                     LVSRGTLGASEIAYYSNLPRTKIYTTL"
     gene            527..1756
                     /locus_tag="VFX26_01630"
     CDS             527..1756
                     /locus_tag="VFX26_01630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX5573207.1"
                     /translation="MSLAPQELENSASKYAAEAIRLDSEGSNGQAISAYQRAVEALVK
                     LVQIYPDYKLNKIYMERANSYQNRIKALQMSNPLYDSDINKMGHIDQKAATSPNSILN
                     NMQSAKKRNEPNGGCSLYFEELLMTDKPKVSWNEVIGLEDAKRAMRESIVYPTIRPDL
                     LPLGWARGILLFGPPGCGKTLLAAAAAAEIEGYFINVDAASMMSKWLGEAEKNVSKLF
                     SMARKLHDSEGVPVLIFVDEIDSLLGNRNSEVGGEVRVKNQFLTEMDGINGKSRESKL
                     YVIGATNKPWSLEAGFLRRFQKRIYVSLPNRESRIHLFDQYTRRLQMEPSLKIEDLAK
                     ISDGYSGSDVKDICQSVQLRVVDELFQSGKGLDSDANTRSITELDFKEILKMRKPSVG
                     MDMIRAYVRWSEQFKAL"
     gene            complement(1753..2292)
                     /gene="ppa"
                     /locus_tag="VFX26_01635"
     CDS             complement(1753..2292)
                     /gene="ppa"
                     /locus_tag="VFX26_01635"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF002317.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004427 - inorganic diphosphate
                     phosphatase activity [Evidence IEA];
                     GO_process: GO:0006796 - phosphate-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HEX5573208.1"
                     /translation="MATNQGIGSIKQSPDQCTVMIEIPKGSSIKYEYDTESGFILVDR
                     KLFTAMYYPCNYGFIPNTLEKDGDPVDVLVLGETPLAPLSLIKVIPVGVLKTEDEEGQ
                     DSKIVAIPTSKIDPSFSTVQDIEDVPQHLKDQIKHFFEHYKELEKEKFVKISGWEGKE
                     SAVRKIAEAISSYQKVNKS"
     gene            2450..5665
                     /locus_tag="VFX26_01640"
     CDS             2450..5665
                     /locus_tag="VFX26_01640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HEX5573209.1"
                     /translation="MKLETKYDPKEIEIQINSYLNKIDIQSLIDKELSSYKRTLGFVE
                     GPPTLNGEPHVGHLRGRIIKDLWFRYKTLQKYKVVFRAGWDTQGLPVELQAEKNLGLT
                     GSKAENIKKVGIPKIVEACKDLIKTNAEKWIKVDALLGMSFDYENAYWTFKDAYIERE
                     WQVLKKAWELGILKEWFRVVAYCPSCQTSLSNAEVNQGYKILEDPSFYYKMRLKEENT
                     FLVVWTTMPFTLVTDELIGVNPEADYAYVSIENETWIIGYARLNDLMNELGIQNFTVE
                     KVIKGVKLDGKRYLHPLLAIIPGLKELSDDKKVHFVVAENFVDASTGSGIVHLSPANG
                     QEDFDTAVKRHVPIFVPINDKVEFTEKAGIFSGKFVRDSDLLVVEKMKEAGAYLKLGK
                     IKHQYPTCWRSNHKVVWLARREYFYMIDKLDNKPMNAISNVNFFFESPKNRFVEIIKE
                     QVPWCISRERVWGTPIPIWNCIKCGLKEPLFSRNEIIRRASKLPDGEQFELHQPWIDN
                     IEINCLKCNIPMIRESFVLDTWHNSGASPYAAFSDDEYEDLIPAEFLTEGIDQTRGWA
                     YTLLMENVIMQNKDQSPFESFLFQGHILDEKGNKMSKSLGNVLDANKLLVDHSVDAIR
                     FYFMWKSSPIESLSFSLSEMGARPYQVLSTLYYLHVYLIQNSTYDKFDTKNIDLDSIV
                     KSNNFTMTEAWILSKLQSLVKIVTLSLDSCRLNDGAKELEDFIINSLSQTYVPMTRDD
                     IWDDSMETLERRNVIYAVLGYTLLMIDILLHSYCPYITNYLYLLCFKQKDLVLLESWP
                     KINTNLVNNEIENTIDKSKLVISLVNAARMKAKFKRRWPINTVVICTQDRNLLESSGL
                     SEILKKQLNTMSVDIKVANFSNLFEKINFLNTENLVSLSAKLKVNKIAPRLKNDLKNA
                     LESFNQVNYGDLFDQLNSKSNFNLKHMSGEIELSLDDVEFSYTGKTPYIMMESEQENV
                     AVFIDTTRSSKLISMGLMKDIARNIQQLRKERGFVPTQILSSAHISNLDSDDLLSLEN
                     YKNELAYYVRVKQVIITPNKLVGIEYKEIEIDGRKILISVQ"
BASE COUNT         2073 a          961 c         1175 g         1858 t
ORIGIN      
        1 tagggttgtg taaatttttg ttctaggaag attagaatag taggctatct cacttgcgcc
       61 caaagttcct cttgaaacca aagtaatgta tgccatagac tcatattttg atagcccaaa
      121 ctcttctaga tttgctacaa gctctagata attaggtata tcattaggac gtttaatcat
      181 atgcactttt tttatatttt ggacgtaaag caagatgtca atttgattgg acaaaacaaa
      241 aaaaaatgta aagctgaaat atcataatac tacaagatag atgatttatc ctaggatttt
      301 ctcacaatcc aataacatat cataattcca agatgaattt attgattaaa agatattcac
      361 tccaaattca aaatattact ttgaggtaga tactgtatat ttttttatat ttttggacaa
      421 aactatgcca ctttttttta gtctttgttc aatttatttt gtcccttgac caatatagat
      481 tcacaatgca gtaattcaaa ggaatactct gaattttaat gaatatatga gtttagctcc
      541 acaggaactt gagaatagtg ctagtaaata tgctgctgaa gcaattagat tggactcgga
      601 aggttccaat gggcaagcaa ttagtgccta tcagagggct gttgaagcat tagtcaagtt
      661 agtacaaatc taccctgatt acaagttgaa caaaatttac atggaaagag caaactccta
      721 tcaaaataga atcaaagcac tgcaaatgtc taatccatta tatgattctg atattaataa
      781 aatgggacat attgaccaga aagctgcaac gtcaccaaat tccatactta acaacatgca
      841 atcagcaaaa aaaaggaacg aaccgaacgg aggatgcagc ttgtacttcg aagaacttct
      901 gatgactgac aagccaaagg tatcatggaa tgaagtgatt ggattggagg atgcgaagag
      961 agcaatgaga gagtctatag tttatcccac aataaggccc gatctacttc cattaggatg
     1021 ggcacgggga attctactat tcggacctcc tggctgtgga aagacgttac tcgcagcagc
     1081 agccgcagct gaaatcgaag gttatttcat aaatgttgat gcagcttcaa tgatgagtaa
     1141 atggttgggt gaggcggaaa aaaatgtttc aaaattattt tcaatggcac gtaagttaca
     1201 cgatagtgaa ggtgttcctg ttctgatttt tgttgatgaa atagattcac ttctaggtaa
     1261 tagaaatagt gaggttggag gtgaggttag agtaaaaaat caattcctta ccgaaatgga
     1321 tggcataaat ggaaaatcaa gggaatcaaa attgtatgtc attggtgcaa ccaacaaacc
     1381 atggagtttg gaagcaggtt ttcttagaag atttcaaaaa aggatttatg tttctctacc
     1441 aaacagggaa tccagaattc acctctttga ccagtataca agaaggttac aaatggaacc
     1501 ttccttaaaa atagaagact tggcaaagat atctgatggt tacagtggga gtgatgtcaa
     1561 ggacatatgt cagtctgttc aactgcgcgt tgtggatgaa ctattccaaa gtggaaaggg
     1621 attagatagc gatgcaaata ctcggtccat cacggagctg gattttaagg aaattctgaa
     1681 aatgagaaaa cccagtgtgg gcatggacat gattagagca tatgttagat ggagtgagca
     1741 gtttaaggct ctttagctct tgtttacttt ttgatagctg ctaattgcct cagctatttt
     1801 tcttacagca gattcttttc cttcccatcc tgaaattttc acaaattttt ctttttccaa
     1861 ttctttgtag tgttcaaaaa agtgttttat ctggtccttc agatgttgtg gcacatcttc
     1921 gatatcttga acagttgaga aactaggatc aattttggat gtcggaatgg ctactatttt
     1981 tgaatcttga ccttcttcat cctcagtctt tagtacacct acgggtatta cttttattag
     2041 agataatgga gctaacggag tttctccgag tactaaaaca tctacgggat ctccatcttt
     2101 ctcaagtgtg tttggtatga atccataatt gcatggataa tacatcgcag taaacaattt
     2161 cctgtccacc aagataaaac cactttctgt atcatattca tattttatac tactgccctt
     2221 tgggatttca atcattactg tgcactgatc gggtgactgt ttaatagaac caattccttg
     2281 atttgttgcc atactatctt cttaataggc gctatttata ttcgaaaagg ttctggatag
     2341 attaactgaa tttaccattt ataataacta atgattttca aaaaagaaca aattaagaca
     2401 gatatttgat aaaattataa aagagaaaat agaactgacg ttcgcattaa tgaaactaga
     2461 aacaaaatat gatccaaagg aaattgaaat tcaaattaat tcatacctta acaagattga
     2521 tatacaatca ttaattgaca aagagttatc atcttacaaa agaacacttg ggtttgttga
     2581 gggaccgcct accttaaatg gtgagccaca tgtgggtcat cttagaggac gtatcatcaa
     2641 agacctatgg ttcagataca aaactctgca aaaatataaa gttgtattcc gagcaggctg
     2701 ggatacccaa ggtttaccag tcgaattaca ggcagaaaaa aatttgggat taactggcag
     2761 taaagctgaa aacatcaaaa aggttggtat cccaaaaatt gtagaggcat gtaaggatct
     2821 aatcaaaaca aatgctgaaa aatggatcaa agttgacgct cttcttggca tgtcgtttga
     2881 ttatgaaaat gcgtattgga cttttaaaga tgcatacatc gaaagggagt ggcaagtact
     2941 taaaaaagcc tgggaactgg gaattcttaa agaatggttt agagtagtcg catactgccc
     3001 ttcctgtcaa acttcattga gcaacgcaga ggttaaccag ggctacaaaa tactagagga
     3061 tccatccttt tattacaaaa tgaggctaaa ggaagaaaac acttttctag ttgtgtggac
     3121 aactatgccg ttcactttag tgactgatga actgataggc gtaaatcctg aagccgatta
     3181 tgcttatgtt tcaattgaaa acgaaacgtg gattattgga tatgccaggc ttaatgattt
     3241 gatgaatgaa cttggaattc aaaattttac tgttgaaaag gtcattaaag gcgtaaaatt
     3301 ggatggcaaa agatatctcc atccactatt agctataata cctggactaa aggaactaag
     3361 tgacgacaag aaagtacatt ttgtagttgc agaaaatttc gttgatgcaa gtactggtag
     3421 cggaatagtt catttgtcac cagcaaacgg tcaagaggat tttgatacag ctgtcaaacg
     3481 gcacgttcca atatttgtgc ccattaatga taaagtggaa ttcactgaga aagcagggat
     3541 atttagcgga aaatttgtac gcgactcgga tcttttggtt gtagaaaaaa tgaaggaggc
     3601 aggagcttat ttgaagttgg gtaaaatcaa acatcagtat ccaacttgtt ggcgctcgaa
     3661 tcacaaggtt gtctggcttg cgaggcgtga atatttttac atgattgata aacttgataa
     3721 taaaccaatg aatgctattt caaatgttaa tttctttttt gaatctccaa aaaacagatt
     3781 tgtggaaatc ataaaggaac aggtaccttg gtgcatatcg agagaaaggg tatggggtac
     3841 tcctattcca atatggaact gcatcaaatg tggtttgaaa gagcccttgt tttcccgaaa
     3901 tgaaattatc aggagagcat caaagttgcc tgacggggag caatttgaat tgcatcagcc
     3961 atggatagat aatatcgaga ttaattgctt aaaatgtaac attcctatga ttcgagaatc
     4021 cttcgttctt gatacctggc ataacagcgg tgcatcgcct tatgctgcat tttcggatga
     4081 tgagtacgag gatctaatac cggctgaatt tctgaccgaa ggaatagatc agacaagggg
     4141 gtgggcatat actttactca tggaaaatgt aataatgcaa aacaaggacc aatcaccatt
     4201 tgaatcgttt ctatttcagg gacacatatt agatgaaaag ggaaataaaa tgagtaagag
     4261 tctgggtaat gtactggacg ctaataaact tctggtcgac cattcggttg atgcaataag
     4321 attctatttc atgtggaagt cttcacctat tgaatcccta agctttagcc taagtgaaat
     4381 gggggctaga ccatatcagg tgctaagtac tctctattat cttcatgtat acttgattca
     4441 gaacagtaca tatgacaaat ttgatactaa aaatatagat ctggactcca tcgtaaaaag
     4501 taacaatttt actatgactg aagcgtggat tttatccaaa ttacaatcgt tggttaagat
     4561 agtaacttta tcgttagatt cctgtaggtt aaacgatgga gcaaaggaat tggaagattt
     4621 cataattaat agtctcagcc aaacttatgt tcctatgact agggatgata tatgggatga
     4681 cagtatggaa acactagaga gaaggaatgt gatatacgca gtactaggat acacactact
     4741 gatgattgac atactccttc attcgtattg tccttacata acaaattatc tgtatttatt
     4801 atgtttcaaa caaaaagatt tagttctgct cgaatcatgg ccaaaaatta acaccaactt
     4861 ggtaaataat gaaattgaaa atactataga caaatcgaaa ctagttattt ctttggttaa
     4921 tgcagccaga atgaaggcga aatttaaaag aagatggccc attaatacag ttgtaatttg
     4981 tactcaagat agaaatcttc ttgaatcaag cgggttatca gaaatattga agaaacaact
     5041 caataccatg tctgtagata ttaaagtagc gaattttagt aatttgtttg aaaaaattaa
     5101 ttttctgaat acggagaatc ttgttagcct gagtgccaag ctcaaagtaa ataagattgc
     5161 tcctagatta aagaacgatt taaagaatgc cttagaatca tttaatcaag ttaactatgg
     5221 tgatctgttt gaccaattaa attcaaaaag caatttcaat ctaaagcaca tgtctggtga
     5281 aatagagttg tcattagacg atgttgagtt ttcatatact ggaaaaacac catatataat
     5341 gatggaatct gaacaagaaa atgtcgctgt gtttattgat accactagaa gtagcaagtt
     5401 gatttcaatg ggtcttatga aggatattgc aagaaatata caacaactga gaaaggaaag
     5461 gggttttgtt cctacacaaa tattatcatc tgcacatatc tcgaacctag attcagatga
     5521 tttattgtca cttgaaaact ataaaaatga attagcgtac tacgtaagag taaaacaggt
     5581 aatcataact cctaacaaat tagtgggcat tgaatacaag gaaattgaaa tagatggcag
     5641 aaaaatcctt atttctgtac agtaggaatt attgttccca aaattaggaa tattggcaaa
     5701 ggtatttact accaattctt ccttaaccag ttatttattt gatcatcttg gatagatgtg
     5761 catttctgcc ttaaaataat catgtggttc tgtagattta tggctggtat tagaaccaca
     5821 tattagtaat gcatattctg atttgcaccg gaattgccaa gactgtcaat tttgttagat
     5881 gcaattgaat ttcggattaa ttgataactg ctatcgtgac agttacagga acagaaattt
     5941 ttcaatactt ccttctccat tatcaatcct ttgcaatcgc catgattatt acaaatacac
     6001 attgacgatt tagccaataa ttgtaattca aagtaactat tgtatatttt ttactataaa
     6061 taatata
//
LOCUS       DASUMD010000062         2447 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_456577, whole genome shotgun sequence.
ACCESSION   DASUMD010000062 DASUMD010000000
VERSION     DASUMD010000062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2447)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2447)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2447
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_456577"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..696)
                     /locus_tag="VFX26_01645"
     CDS             complement(<1..696)
                     /locus_tag="VFX26_01645"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX5573210.1"
                     /translation="MTEPYNGNNNGNPASPSLNEKVPRKAWMSLAILGSALLIAMYGE
                     TMLLPAIPDIIEEFDISYNTSSWILSAYLIAGAVATPLGGKLSDIYGRKKMITIILII
                     YIIGITLGGLSTNFAFLIVARVIQGIGISMFPIAFGIIRDQFPKDKLAIGVGVFSSMF
                     AAGSVVGLALGANIIENFGWRTTFFSIVFVAIGLWFIIRRYIHDEKESVNAIESQEIH
                     YSSDTVDNKINDPD"
     gene            complement(954..1757)
                     /locus_tag="VFX26_01650"
     CDS             complement(954..1757)
                     /locus_tag="VFX26_01650"
                     /inference="COORDINATES: protein motif:HMM:TIGR03709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0016776 - phosphotransferase activity,
                     phosphate group as acceptor [Evidence IEA];
                     GO_process: GO:0006797 - polyphosphate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PPK2 family polyphosphate kinase"
                     /protein_id="HEX5573211.1"
                     /translation="MKDIKELLIPTAGRIDLSKFDPDDTFGKTRDELDDKLPKLKSIM
                     SELQYKLYVENEKSLLIVLQGMDTSGKDGTIRHVISAFNPVSCRVESFKAPTSEELAH
                     DFLWRIHKAVPRKGFVGVFNRSHYEDVVEARVQNLVAKSMVMKRISQITQFEIMLAEN
                     NVKILKFYLHISKQEQKKRLLERLSDPEKQWKVAEDDHKKRKKWGEYMNAYTDAISNC
                     SIKQAPWYVIPANKKWFRNWAISKIITNTLIEMKIRYPKSSPHHTNMKI"
     gene            complement(2114..2407)
                     /locus_tag="VFX26_01655"
     CDS             complement(2114..2407)
                     /locus_tag="VFX26_01655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573212.1"
                     /translation="MSITNKKVNNNEGNRKIMSDSKNPKINERIFLLCDQCFWTVTCL
                     SKNYLEETLARNNKCPRCNQDQLSSFPVMPNDSFTYSYSKKRGIELNFGIRKT"
BASE COUNT          752 a          466 c          372 g          857 t
ORIGIN      
        1 atcaggatca tttatcttat tgtcaacggt atcagaagaa taatgtatct cttgtgactc
       61 aatcgcgttc acagattctt tctcatcatg aatatatctc cttatgataa accataatcc
      121 tatggcaaca aatacaattg aaaaaaacgt agttcgccaa ccaaaattct ctattatatt
      181 cgctcccaat gctaaaccaa ccacggaacc agccgcgaac atagagctga acacacccac
      241 acctatcgca agtttatctt ttggaaactg atctcgtata attccaaatg caatagggaa
      301 catagagatg ccaattcctt ggattactct ggcaactatc agaaatgcaa aattagttga
      361 aagtcctcct aaagtaattc cgataatata gataatcaat atgatagtta tcattttctt
      421 cctaccgtag atatcagaga gctttccacc gagcggtgtt gcaacagccc ctgcaataag
      481 atatgcagaa agaatccatg aggatgtatt gtaagagata tcaaattcct cgattatatc
      541 gggtattgca ggtagtaaca tggtttcacc gtacatagca attaaaagtg ccgaacctaa
      601 aattgctaat gacatccagg cttttctagg aactttttca ttcaaggacg gtgatgccgg
      661 atttccatta ttgttaccat tatatggttc cgtcatttca attcaaatcg tctttatatg
      721 gtgagcatat acatcttttt aatgtatcga attaatttga atcaacattc taattttgag
      781 aagctttatt atgaataaca aagtcaagtt cagttcatct ctactgatgc caatttacta
      841 acgaaatgtt gtatagcgta aaaaattttg tattcctgcc ggcttataac cttgaatctt
      901 acatgactgt catatcacta cctaaaatac agttaatatt tagaaaaata tgcctaaatt
      961 ttcatgtttg tatgatgagg agaagatttc gggtatctta ttttcatttc tatcaaagta
     1021 tttgtgatta tttttgaaat tgcccaattt ctaaaccatt tcttgtttgc cggtataaca
     1081 taccaaggag cctgttttat gctacaatta ctaattgcat ctgtataggc attcatgtat
     1141 tctccccact tttttctctt tttatgatcg tcctcagcaa ccttccattg tttctctgga
     1201 tctgacaatc tctcgagaag tctttttttt tgctcttgtt tacttatatg caaatagaac
     1261 tttaatattt tcacattatt ttctgctaac attatttcaa attgtgtgat ctgactaatt
     1321 cttttcataa ccatggattt agctaccaaa ttctgaacac gagcttcgac aacatcctca
     1381 taatgagaac gattaaacac tcctacaaac ccttttcgag gtactgcttt atgaattctc
     1441 cataaaaaat catgtgctag ttcttcagat gtcggcgcct tgaatgattc aactctacag
     1501 gacaccggat taaaggcact tatcacatgc cttattgtcc cgtcttttcc agaagtgtcc
     1561 atgccttgga gaacaattaa aagtgatttt tcattttcaa catagagttt gtactgtaac
     1621 tctgacatta ttgatttaag cttaggtagt ttgtcatcga gttcgtctct ggttttacca
     1681 aatgtatcat caggatcaaa tttggaaaga tctatacgtc ctgcagtagg aatcaacaac
     1741 tccttgatat ctttcattat atagtttcca acagccatgc ttataacaat agtttttgag
     1801 ttagtggtta tacctattca taatgaatcg atgcatcttt ttatgaattg gctagttaaa
     1861 cttatgaaaa tcaaagccga aaactactaa actggtgggt ctgtaatcgg tggtaataaa
     1921 gggcgaccca ccagtcatga agcggtgttc tctcggtgtt tgacctatta gcttagtgca
     1981 caacatagaa taaaatcatt ttagtttatt tactttccta aatgtatcaa gtatcatgct
     2041 acagtatact aatttctgtt aatgatttta tttggaagaa ccatatatac caatagattc
     2101 caaatcggta atatcatgtc tttctaatac caaaatttag ctcaatacct ctctttttag
     2161 aatagctgta cgtaaatgaa tcattaggca ttaccggaaa gctggataat tgatcctgat
     2221 tgcaacgagg acatttatta ttcctagcca atgtctcctc gagataattc ttgctaagac
     2281 atgttacagt ccagaaacat tggtcacata aaagaaatat cctttcattt atcttgggat
     2341 ttttggaatc actcattatc tttctgttac cttcattatt gttaactttt ttgttcgtga
     2401 tactcaattt tgactatttt tgaatactca catcaataaa gtatttt
//
LOCUS       DASUMD010000063         3195 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_346027, whole genome shotgun sequence.
ACCESSION   DASUMD010000063 DASUMD010000000
VERSION     DASUMD010000063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3195)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3195)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3195
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_346027"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..502
                     /locus_tag="VFX26_01660"
     CDS             <1..502
                     /locus_tag="VFX26_01660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573213.1"
                     /translation="MMDTHFRKQIVQNIKVGNNIRAKALAGELVNIHKIQHTTRNMTM
                     SLEVVALRSTIIGEFAVIMDTINPTIDLIKDIEKDISMVIPTAHEVLNDVTNASSEIL
                     NYNVSPEVKISMPVDEEALKILSEVEQSVEEETRQRLPDIPATINVVKNRNEYDSLVE
                     ENEVMI"
     gene            603..2711
                     /gene="nrdD"
                     /locus_tag="VFX26_01665"
     CDS             603..2711
                     /gene="nrdD"
                     /locus_tag="VFX26_01665"
                     /EC_number="1.1.98.6"
                     /inference="COORDINATES: protein motif:HMM:NF024984.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008998 - ribonucleoside-triphosphate
                     reductase activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HEX5573214.1"
                     /translation="MEIEASHDLITQTETKPSGILQAAKRVRMIFSVMASPNRIDILR
                     ILNSKGPLTYSELKSLAGFKSKKESGKFAYHLRKLLRQSLVALNKAERRYTITNLGKL
                     VLSLARQIEERSIIESGKMYVRTSRHSIEEFNSNRITQSLVREASMPLEQAHKITEEV
                     ENKVYKFQTVYLTSSLIRETVNSILIEHGYEEFRSKLARLGIPGSDISDMFNNPLYSR
                     NGVEGILSETSLAVFSENLLFNLLPKDITDMHLAGELNISNTGLWNLMPDTVFVDTRN
                     IIENGLNFKGKYLNVSRVKPIQTLDDIMAVLPVLVSVLSREASREVILDSFVSTISNK
                     IQGSDEDIESAFSRAFISSSISRSYSSSGFPVITFPISIEGGSITRSILAAYLRYLDY
                     TPIPTIALSLVGNDQDSLRANTDLIGNIVKHGGILSVSKNYRSHIGIVKTELDQKSSS
                     VVSLESLAINLPRLAYQSNKDETYFRARLALMIKPAISALLARKNSILEMIRREMLPV
                     MANITQMMQLSKMNLVINLTGIRESVYNILGHEFDGEEIIQKVLHTAVEVASDQGKLA
                     GDDSIRIAMITDDSNTRLASLDSEKYGNLSHQAGNDSMIKSYSQGLLINGRDLLSNSG
                     PIIESSNSIDKLLNGGVSLNVDISDLTDNELKDCINRSLDFNFFRPVYRNKICSSCGT
                     KMSVSSEVCTSCGSTNFAPL"
BASE COUNT         1102 a          527 c          620 g          946 t
ORIGIN      
        1 tatgatggat acccatttta gaaaacaaat tgtacaaaac atcaaagtgg gtaacaatat
       61 tcgagccaag gcactagctg gtgagcttgt aaatatacat aaaattcagc atacgacgag
      121 aaacatgaca atgtctcttg aagttgtggc gctacgttct actataattg gtgaatttgc
      181 tgttataatg gatacaataa atccaacaat agatttgata aaagacattg agaaagatat
      241 ttcaatggta atacctacgg cgcatgaggt attgaacgat gttacaaacg cttcatcaga
      301 aattctaaat tacaatgtca gtcctgaagt aaaaatatcc atgcctgtag atgaagaagc
      361 gctaaaaata ttgagcgaag tggaacagag tgttgaggaa gagacaagac aaaggttacc
      421 cgacatacct gctacgatta atgtggttaa aaaccggaat gaatatgatt ccttagtaga
      481 ggaaaacgaa gtaatgatct agatttgatt ttctaatacg tagtaggtaa attgttttgt
      541 actgttagtc aataactatt tacgacccaa ttttaaatta tctcaagata atatcgggtg
      601 agatggagat agaggctagc catgatctaa taactcagac tgaaactaaa cctagtggaa
      661 ttttacaagc agcaaaaaga gttaggatga tcttctccgt aatggcaagt cctaacagaa
      721 tagatatact tcgtattcta aattctaaag gacctttaac ttattcagaa ttgaagtcgt
      781 tagctggttt taaatctaaa aaagaatctg gtaaatttgc ttaccatttg aggaaacttt
      841 tgaggcagtc tcttgtagca ctaaataagg ccgaaagaag atatacaatt accaatctcg
      901 gaaaattagt gctgagttta gcgagacaaa tcgaagagag atctataatt gaaagtggaa
      961 aaatgtatgt acgaacttcg agacattcaa tcgaagaatt taattcaaat aggataactc
     1021 aatcgctagt tagagaggcg agtatgcctc ttgagcaagc gcacaaaatc actgaggaag
     1081 tggaaaacaa agtttacaaa ttccaaactg tatatcttac atcctcgctt attagggaga
     1141 ccgtgaattc gattttaatc gagcatggat atgaggaatt tagatcaaaa ctagccagat
     1201 taggtattcc aggatccgat atctctgata tgtttaacaa ccctctatat agcagaaatg
     1261 gagtagaagg tattttatca gaaacttctc ttgctgtttt ttccgaaaat ctgctgttca
     1321 atttgttacc caaagacatt accgatatgc atcttgctgg cgaactaaac atatcgaaca
     1381 ctgggctatg gaacttgatg cccgatacag tttttgttga tactaggaat attattgaaa
     1441 atggcttgaa ctttaaagga aaatatttga atgtttcaag agttaagcca atccagacac
     1501 ttgacgatat catggcagtt ctgcccgtgt tggtttcggt cttaagcaga gaagcttcta
     1561 gggaggtgat acttgatagc tttgtttcta caatttcaaa taagattcaa ggaagtgatg
     1621 aagatataga gtctgcattt tctcgggcat ttatttcatc atccatttct agatcatatt
     1681 cttcatcagg atttccggta attacttttc ctatttctat tgaaggtggt tcaattacta
     1741 gatccatttt agctgcttac ctgagatatt tggactatac ccctattccc actattgcgt
     1801 tatctctagt tggtaatgat caagattccc tgagggcaaa cacagatcta atcggaaata
     1861 ttgtcaagca tggaggaatt ttgtctgtgt ctaagaatta caggagccat atcggaatag
     1921 taaaaactga attggatcag aaatcaagtt cggttgtaag cttggagtca ttagcaatta
     1981 atctgcccag attagcttat caatcgaata aagatgaaac ttatttcaga gccagattgg
     2041 cactgatgat aaaaccagct atttctgctt tattggcaag aaagaactct attttggaaa
     2101 tgataaggag agaaatgcta ccagtaatgg ccaatattac acaaatgatg cagttaagca
     2161 agatgaatct agtgattaat ttgacaggaa taagagagtc agtatacaat atactaggac
     2221 atgaatttga tggagaagaa attattcaaa aggtattgca tacggctgtt gaagttgctt
     2281 cggatcaagg caaactagct ggagacgact ctatacgaat tgccatgatt acagatgaca
     2341 gtaatacccg attagcttct ctagactcag aaaaatatgg aaacttgtcc catcaagccg
     2401 gtaatgattc gatgataaag tcttattccc aaggacttct tattaatggc agagatctac
     2461 tttcaaattc tggtcccata atagaatcaa gtaactcgat cgataaacta ctgaacggtg
     2521 gagtttcact caatgtagac attagtgatc ttacggataa tgaattgaag gattgcatta
     2581 ataggtcatt agattttaat ttcttcagac cagtttacag aaacaaaatt tgtagctcgt
     2641 gcggtacaaa aatgtccgtg tcatccgaag tctgtacaag ctgtggctcc actaatttcg
     2701 cgccactatg aaaggggcct tctcctgaat tcagaaaatt aacactcgcc atattattat
     2761 ccgatatgat aactttttga gccaagcttt cgttttattt tcatcagaaa agacaggact
     2821 aacttaaggg tgaagataat agctagcatg acggccgcct tagaacatct tgctgttcct
     2881 aaattgcgta aattagataa ttcaacatgc aatccatgaa tgaatttaag atagaactaa
     2941 tgggcaaaaa gctcgaatta atgcaggtga atttttggaa gctacctaat tttaacttcc
     3001 taacctatca cgcaatataa tgacctcgaa tcaaatagtt tcaaccctga ttggattatt
     3061 ttttagtaaa ataatatttt taagctaggc tttagctgta taagcgttat ggcaaaggaa
     3121 attacggaaa ttgagaattc ttcaaacact aacaaaaaac caatcgcgca aatcaagaag
     3181 agggataaag gacta
//
LOCUS       DASUMD010000064         2355 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_124808, whole genome shotgun sequence.
ACCESSION   DASUMD010000064 DASUMD010000000
VERSION     DASUMD010000064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2355)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2355)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2355
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_124808"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(157..621)
                     /locus_tag="VFX26_01670"
     CDS             complement(157..621)
                     /locus_tag="VFX26_01670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573215.1"
                     /translation="MESDDESANLVTNWMLESNFSSEEFEDYHQALSMFNNISKNGTQ
                     VILYEIKKSPVDGSIVKKTPVLNSKKAKTKSRSFNRITYRKSGDKSDDHPKNKNKFKD
                     FKVRIFLLIIVLLTFIVIMFFMNSIAGESSNVMMVHQSILFRIDNPSYFLHI"
     gene            complement(669..797)
                     /locus_tag="VFX26_01675"
     CDS             complement(669..797)
                     /locus_tag="VFX26_01675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573216.1"
                     /translation="MEGASKFKPVKVELKVSNAKGTDEVNNRVNEITNQCGFYVRA"
     gene            complement(837..1496)
                     /locus_tag="VFX26_01680"
     CDS             complement(837..1496)
                     /locus_tag="VFX26_01680"
                     /inference="COORDINATES: protein motif:HMM:NF012451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HEX5573217.1"
                     /translation="MLSDDIMNYYAILRVSQYAKYREIKAAYRLLALKYHPDRNSSPV
                     SENSIKIINAAFEILSDKDKRRQYDEKLVNSIILHRKKEETKSHTSSSHASSSTAYSD
                     SDYNNSHDNYDNTYLRKGKRNGLDVKSEGESSIRKLLGKTKGRYHITIEPSLCMAFGS
                     CETLAPNVFEVDKNKMLNPKAMVKSETGNDFESILNAAETCPTKAIILRDRYTGRQIY
                     P"
     gene            complement(1787..1981)
                     /locus_tag="VFX26_01685"
     CDS             complement(1787..1981)
                     /locus_tag="VFX26_01685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573218.1"
                     /translation="MLGKTLKSIEPFTPSAKKSSRFCAGCGEPATKLVKYDTEGAIII
                     EKYCDKCANAIEDSSQKHAN"
     gene            complement(2213..2300)
                     /locus_tag="VFX26_01690"
     tRNA            complement(2213..2300)
                     /locus_tag="VFX26_01690"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2264..2266),aa:Lys,seq:ctt)
BASE COUNT          729 a          419 c          366 g          841 t
ORIGIN      
        1 gataatacag ttatccagtt tatacgcagg taaatatatt gatatgttgt agtactaatc
       61 agattcataa tttcccatac acttgaagat tttaagattt aaacacaaaa aatgcaagtc
      121 agaataattt ttaattataa cccaagatga cctatattaa atatgtaaaa agtaactcgg
      181 attatcgatt ctaaataata tagattggtg taccatcata acgtttgacg attctcctgc
      241 aatactattc ataaaaaaca ttatgacaat aaaggtaagc aaaacaatga taagaagaaa
      301 aatccttacc ttaaagtcct tgaatttatt tttgtttttc ggatgatcat cagacttatc
      361 tccggatttt ctataagtga ttctattaaa tgatcgtgat ttagttttag cttttttaga
      421 atttagtacc ggagttttct ttacaataga cccatccacg ggactctttt ttatttcata
      481 taaaataacc tgcgttccat tctttgatat gttattaaac atggaaagag cttgatgata
      541 gtcttcaaat tcttcactag aaaaattaga ttctaacatc caatttgtta ctaaatttgc
      601 tgattcatca tcgctttcca aatgctttcg caatgaaata agtgtagata atataaaatt
      661 cttgccgtct atgctctgac gtaaaatcca cattgatttg taatttcatt gacccggttg
      721 ttgacttcat ctgtcccttt tgcatttgaa actttaagtt caacctttac aggcttaaac
      781 ttagatgcac cttccaaata gtctttgcta ccctcgtatc cttatttctt ataacttcaa
      841 ggataaatct gtctgccagt atacctatct cttaatatga ttgctttagt tgggcatgtc
      901 tcagctgcat taagtattga ttcaaaatca ttaccagttt ctgactttac cattgctttt
      961 ggattgagca ttttgttctt gtctacttcg aaaacatttg gagcaagtgt ttcacagctt
     1021 ccaaaagcca tgcacaggct aggctcaata gttatatggt aacgaccttt cgttttaccg
     1081 agcaattttc ttatcgatga ttccccttct gatttcacat ccaatccgtt tcgtttacct
     1141 tttcttaggt aagtgttgtc atagttatca tgactattgt tataatctga atcagaataa
     1201 gcagtactgc tactagcatg agaagaggat gtatgtgatt ttgtctcctc ctttttccta
     1261 tgtaatatga tactgttaac tagcttctca tcatattgtc ttcttttatc tttatctgaa
     1321 agaatttcaa aagcagcatt tattatttta atactatttt cagaaacagg cgaactattt
     1381 ctatctggat gatatttcaa agctagaagt ctataggcgg ctttaatttc tctatatttt
     1441 gcgtactgtg acactcttaa aattgcataa taattcataa tatcatcaga aagcatttta
     1501 acaacgagta ttagatggtt ttaattcctt ttaagctttg tagcataatg aaagtaccta
     1561 acatatagaa acatttgagc cttgcttgtg ggtcgggtac taatcatgct gttaacaatt
     1621 cggaccagcg ggtgaacgaa attaaatttg aaataacttt tagcccccag aataaggaaa
     1681 gaatgggaac ttggggtttc atacacttaa gtttgtttac aaaatccgtt caattagttg
     1741 tattaggctt gccttctcta attgtgactg atgactctat gtaaatttaa ttggcatgct
     1801 tttgtgaact atcttcaatt gcgttagcac atttatcaca atatttctca attattattg
     1861 ccccttcagt atcgtatttg actagctttg ttgcaggttc tccgcatcca gcacagaatc
     1921 tcgaactctt ttttgcgctt ggcgtaaagg gctcaatact tttcaatgtc tttcctaaca
     1981 actatatctt cgctaattat atagaacgaa ggtacattat aaaccacata aaacaattat
     2041 cggtgtcaac tccaagatta cttagattca agcagaatgg gattcgaact cattaggtaa
     2101 agtcctctaa tttcaaaaaa tcctaaaatt tcctatctga atacgaaaca aacagaaaaa
     2161 gactcgactc aataatatat cagtatgtta ctaataatgg taaagtttag gtcgggttcg
     2221 gtgggattcg gacccacgac attttaaccc atatagactg gttaagagcc agacgctcta
     2281 cctggctgag ctacgaaccc ataaaagttg tgtgtttagg tagtggtatt taaattaaac
     2341 ttgaattcga tcgat
//
LOCUS       DASUMD010000065         3339 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_235907, whole genome shotgun sequence.
ACCESSION   DASUMD010000065 DASUMD010000000
VERSION     DASUMD010000065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3339)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3339)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3339
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_235907"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(93..1517)
                     /locus_tag="VFX26_01695"
     CDS             complement(93..1517)
                     /locus_tag="VFX26_01695"
                     /inference="COORDINATES: protein motif:HMM:NF044564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573219.1"
                     /translation="MGYTEFYENINSIGEKVKNLIDERKDILIVSTSSCDGIISASML
                     IKAIWKLGGKATARFLNRFNVDTLSDLKNENHEFYIFTDIGTGLSELFNKLFSNDWII
                     LDHKKINFAEIATDDNNAILNPWKYDIDGNNEITSGGISFLLVKNLDKKFTELSPLSI
                     VSALGEYQDVGDKRSLVGINNEILEDSKKNGLIQTDIDLLLSFNEFLPIHESIANTYI
                     PYLYGLTSNSEKCLELLNKTNITLKKDGRLKTIYDINQEEKFLILETIKNHLSSQIES
                     NIDNLENILIGYTYVLPAEEYGSHLYDARRFSELLNSCALNSKTGLGMSICLGERSGS
                     LDEAERDVQQFNKSSQKLISKILREKWRIFDKGLCLFINADGIIEPDYVGYLSRLLSS
                     HYQFMNKVIIMKTAIDENYSKYFFSSLIKGSIDVEQMTKELSDSVDGISVTFNNSDVH
                     ITIPPAQENSLMSIILKQIKKISK"
     gene            complement(1526..1972)
                     /locus_tag="VFX26_01700"
     CDS             complement(1526..1972)
                     /locus_tag="VFX26_01700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HEX5573220.1"
                     /translation="MARIHAHTHGKSHSTRPISYNVPSWINQKSELSTIIVQLSKDGL
                     SPSEIGTKMRDQYGVPLIKPILGKGINQLLEENNSTPEMPEDLNQLVQKALALQKHLK
                     VHNTDKRNIRSLELIEAKIHRLSRYYKKKGKISQNWKYAAVIARLE"
     gene            2127..2447
                     /locus_tag="VFX26_01705"
     CDS             2127..2447
                     /locus_tag="VFX26_01705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573221.1"
                     /translation="MNSLTIVTIAAILIAMGPLALTLYQTASAQYTTGQDTGALSVEE
                     QLRLAKEKVSNAQQAGAYGSGTAFFGKNIGDAAIYTAAIVAIFGAVAAAFIVMSRGKK
                     SVSA"
     gene            2676..2954
                     /locus_tag="VFX26_01710"
     CDS             2676..2954
                     /locus_tag="VFX26_01710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573222.1"
                     /translation="MSGVEGLFTMIGNTLHNLIGQIGPSYDPLFYDVMVYIFGTIMFA
                     VFLLAVIAFYMRRKGLGGGSAKESWIKELDKYFESGQIGLIPDEKHHW"
     gene            complement(3089..>3339)
                     /gene="yciH"
                     /locus_tag="VFX26_01715"
     CDS             complement(3089..>3339)
                     /gene="yciH"
                     /locus_tag="VFX26_01715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="stress response translation initiation inhibitor
                     YciH"
                     /protein_id="HEX5573223.1"
                     /translation="DKEETRIVIRLETRRFSKTTTMIEGIDPKLSDIQHIVKELKSKL
                     ACGGTAKDGFIMLQGDHREDVKSYLVKFGFTESAIEVQ"
BASE COUNT         1016 a          593 c          540 g         1190 t
ORIGIN      
        1 attgtctggt gttaatacac taatcattgt atctatttcc cttttactat caaattctat
       61 tttcatacta gactttattt taaacccttc tttcatttcg aaatcttttt gatttgtttt
      121 aaaataatag acatcagtga attctcctgc gccgggggga tagtaatatg tacgtcggaa
      181 ttgttaaatg tcaccgaaat accatcaacc gaatctgata attcctttgt catttgttcc
      241 acatcaatac ttcccttaat cagagaacta aagaaatatt tagaataatt ttcatcaatc
      301 gctgttttca tgattatcac tttattcatg aattgataat gggaactcaa tagcctcgac
      361 aggtaaccaa catagtctgg ttcaatgata ccatccgcat taatgaatag acacaagccc
      421 ttgtcaaaaa tcctccattt ttctctgagt atttttgata ttaatttttg ggaacttttg
      481 ttgaattgtt gcacgtccct ttcagcttca tcgagagaac ctgatcgttc acccaagcaa
      541 atgctcatac ccaatccagt tttactattt agagcacacg agtttaataa ctctgaaaat
      601 ctacgagcgt cgtaaagatg actaccatat tcttcggctg ggagtacata ggtataacct
      661 atcagaatat tttctaagtt atcaatgtta gattcaattt gagaacttag atgattcttg
      721 atagtttcta atatgagaaa cttttcttct tgattaatat cgtagattgt ctttaatctt
      781 ccgtcctttt tcaaagtaat attcgttttg tttaggagtt caagacactt ctcgctattg
      841 gatgttagtc catataaata tggaatgtac gtgttggcaa tagattcatg aatcggcagg
      901 aattcattaa aagataagag tagatcaata tctgtctgta tcaagccgtt ttttttagaa
      961 tcttctaata tctcattatt aataccaaca agagatcttt tgtcaccaac atcctgatat
     1021 tctcccagcg cagaaacgat tgaaagagga gatagttctg taaatttttt atctagattt
     1081 ttgactaaga gaaaagaaat accgccggat gtaatttcgt tatttccgtc tatatcatat
     1141 ttccatggat ttagaatggc gttattatca tctgtagcta tttcagcgaa attaattttc
     1201 ttgtgatcta atataatcca gtcattcgaa aaaagtttgt taaaaagctc tgatagccca
     1261 gtgccaatgt cagtaaatat ataaaattca tgattttcat tctttaaatc agacaaggta
     1321 tctacattga atctattcaa aaaacgggca gttgcctttc cacccagctt ccaaatcgct
     1381 ttgattaaca tacttgcaga aataattcca tcacaagatg aagtcgatac tattaagata
     1441 tcctttcttt catcaattag attttttact ttctcaccaa tcgagtttat attctcataa
     1501 aattcggtat aacccattta attcattatt caagtcgagc gattactgcg gcgtatttcc
     1561 aattttgtga gatttttcct ttcttcttgt aatatcttga tagtctatga atttttgctt
     1621 ctattaattc aagtgatcgg atattccttt tgtcagtatt atgcactttg agatgtttct
     1681 gcaaggccaa tgccttttga acaagttggt tgaggtcttc gggcatctct ggtgtagaat
     1741 tattttcttc aagcagctga tttattccct ttcccaatat tggttttatt aagggaaccc
     1801 catattggtc tctcatttta gtcccgattt cacttgggct gagcccatcc tttgaaagtt
     1861 gaacaatgat agtagataat tctgattttt gatttatcca agaggggaca ttgtaagaaa
     1921 taggtcgtgt tgaatgggac tttccatggg tgtgagcgtg aattcgagcc atttaagtag
     1981 gaatcaataa cgagcatctt aaatgttact tatgcatcat tgactagaaa ttcctaattc
     2041 taagagtaga aacattgcaa aatatgctaa aaattttttt aacaccaata aggttatata
     2101 attcgattca aaactacaaa tttagtatga actcacttac catcgttaca atagcagcca
     2161 tactaattgc aatgggacct ttagcattaa ccttgtatca aaccgcgagt gcacaatata
     2221 caacgggtca agataccgga gcccttagtg tagaagaaca actccgtctg gctaaggaaa
     2281 aagtatctaa tgctcaacaa gctggtgcat atggttctgg aactgcattc tttggcaaga
     2341 acattggtga cgctgcaata tacactgctg caatagttgc aatatttgga gccgtagctg
     2401 ctgcattcat cgtgatgagc agaggtaaaa aatccgtaag cgcatagcgc tactttacta
     2461 ctattttttt attttatatt cagtaatctt ttttttgtat taacttcaaa atttctatcg
     2521 ttccattccc ctctcataac ttgactttaa atttatgagt agatttgata tcttttcgat
     2581 tttcgtattt acctgaattc ctagattggt tttttgcccc gttttaatcg tctcaccaaa
     2641 atgtatatat catagaatta atgtgctaat agataatgag cggagtagaa ggacttttta
     2701 caatgattgg aaatacacta cacaatctaa tcggtcaaat cggtccatcg tacgatcctt
     2761 tgttctacga tgtaatggtc tacatatttg gaacaataat gtttgcagtg ttcttgcttg
     2821 cagtaattgc tttctatatg aggagaaagg gcttaggtgg cggttctgca aaggaaagct
     2881 ggataaaaga actggacaag tatttcgaat cagggcagat aggtctgatt cctgacgaaa
     2941 aacatcactg gtaaattaca aaaaagtcaa acctacaaaa ttcttatttt ttgttttatt
     3001 ttttcaacta aattaaagcc aacattaaac taggattcat gtaaaaaaat ataataaaat
     3061 aatgaaaaat tgtcagggtc aataatgact attgaacttc tatagcagat tcggtgaatc
     3121 caaatttaac gaggtaagat tttacatctt ccctgtgatc tccttgcaac attataaatc
     3181 cgtctttagc tgttcctccg catgctaatt tacttttcaa ttcttttact atgtgttgta
     3241 tgtcgctcaa ctttggatca ataccttcaa tcatagtagt agttttggaa aatcttcttg
     3301 tttcaagtct tataacaatt ctggtttctt ctttatcca
//
LOCUS       DASUMD010000066         9782 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_678758, whole genome shotgun sequence.
ACCESSION   DASUMD010000066 DASUMD010000000
VERSION     DASUMD010000066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 9782)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9782)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9782
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_678758"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..825)
                     /locus_tag="VFX26_01720"
     CDS             complement(<1..825)
                     /locus_tag="VFX26_01720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine-1-phosphate transferase"
                     /protein_id="HEX5573224.1"
                     /translation="MVYLLNTVIYGIIVSAVSFLIIFFITPAFIKYLNKKGRVVVDYH
                     KPGKPFIPRPAGPILLIGIVIAEIILYLLIPDIKIISVLLTTIIGFFIGYIDDRKTMP
                     GWFKPVALILAAVPIIVLGTHGNYLGLIFDSAFIPLLYILLIFSLVPIVGNTINSIDV
                     FNGVASGFIIITMIPLLVSVILFGNTNVFLMSLPLLFACIAIYHYHKFPSKIFLGDSG
                     TLLLGSMYAGILIAGNSEIIGVIALLPAVMNSFLFLSSVKKIVEHRQVKTRPVTICD"
     gene            complement(878..2995)
                     /locus_tag="VFX26_01725"
     CDS             complement(878..2995)
                     /locus_tag="VFX26_01725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEX5573225.1"
                     /translation="MQELLRLLNYDSLYPPQELALSKGVMNGNNILVTTPTSSGKTLI
                     GLMGMINILSKGKKVVYLTPLKALATEKFNEFKIIKNLSCFKNRKINIAISTGDYDSY
                     GTELIDKDIIILTNEKMDSILRHDANWIFDVGLFIIDEIHLLTERERGPTLEIMLTKI
                     KLMPQRPQIIGISATVSNSDEVADWLRCEQIQSKWRPTELIEGVYNYGKVTMNNGTAF
                     EIDNIGAVDNSTSGIISLAMDSITNDGGQSLVFAETRKRTVSLAKKTSDTVSKFLDKS
                     SKLSAHKIGVEILKQGDDTELNRTLSSTVTKGVGFHHAGLGIKSRQIVENAFRNGIIK
                     ILFATPTLAAGVNLPARRVVIASIFRYDYEYGGNIPLSILQYKQLCGRAGRPAYDKYG
                     EAIIIADSRTNPEDLYNHFVLGEPEPIVSQLMNERALRVHVLGVIASRPKILKSELLS
                     FFEETFLSKYHGNDTISFEIDSLLQYLRDEGLIIMRNELLMATKFGKRTSLLYIDPKT
                     GIHFKKNLDYYNSNKINDGTNFLHWICDSYDFYPKLTLRQNEIEYFERMFEKHKLSSY
                     GLSNYDYSLKNLIILLEWIDESTEANLNEKIGVEPGDLYRMVETAYWLSYCLYEIAKL
                     IGRKDLLVEINILRLRIRHGIKSELIPLIQLEGIGRIRARSLYKSGITNVTQIDKISE
                     SKLGSVPKIGVKLARKLKNQIKN"
     gene            complement(3116..5191)
                     /locus_tag="VFX26_01730"
     CDS             complement(3116..5191)
                     /locus_tag="VFX26_01730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="minichromosome maintenance protein MCM"
                     /protein_id="HEX5573226.1"
                     /translation="MTEQKQQTTSAISDELESFLRAFKDREGNYKYFDRINNMMASSS
                     TFVVVDYIDLDTNKPELTKLITDTPDEMFDAFNKAVYSILREIHYDYAQEIKDKIKVR
                     IGNYSVQKGLREINADVINKLISVPGMVVRTSEIKPLAKKIAYACLNCNTLNEAQLKG
                     LALKKPTRCIQCSEKELEMDPENSLFTDFQLVRLQELPEDLPAGQLPHYVEVTVMDDL
                     VDRCRPGDRVLLTGIVRIEQEQTLQVRTSLFRLRMEGNNIEYLGGLVGNKDGRTVDRI
                     AISSEDEKRILSLASMPDAYDKLVASFAPHVYGHEIIKESILLLIVGSVTKKLADGSN
                     RRGDINIFLVGDPGTAKSEMLKFAAKIAPRGLYTSGRGTTAAGLTAAVIRDKSGIMML
                     EAGAVVLGDQGLVCIDEFDKIKSEDRSALHEVMEQQTCSVAKGGIVATLNARTSILSA
                     ANPKYGKYDPFRNITENVEPLPIPLLTRFDIIHVIRDNADTEKDNRIASHILEIHRDI
                     EHAAQSVIEIDLFRKYLAYAKQIEPKLTTEAIDILRKYYLQMRNVDSEGMITATPRQL
                     EGLVRLATARARLLLKDNVDSEDANRAIYLVSQMLETVGIDVNTGKVDLGVLHGKPLS
                     ETSKLKTFTDVFNGLSGEDKNDVEEKNFINELVKTGKFTEDEAKEFIRKAMQNGQIYE
                     RRAGFYAKA"
     gene            complement(5192..5728)
                     /locus_tag="VFX26_01735"
     CDS             complement(5192..5728)
                     /locus_tag="VFX26_01735"
                     /inference="COORDINATES: protein motif:HMM:NF017704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573227.1"
                     /translation="MSSSTILTQSVFESLRNTYLLEYLVEEIRVTVKSDIKISINDIN
                     VDAKEGDILQVPRWLAKILSKKNLIEIQDNEMSSYVSKALNRERISKPHDISGIDADF
                     YIRVDDFLKSLNEKEKETLMVSLNSFVISRLGKIVKLAAASSLSAEMETKLSAEEKQL
                     YNFINTSSLAFKESVLGK"
     gene            5809..6801
                     /locus_tag="VFX26_01740"
     CDS             5809..6801
                     /locus_tag="VFX26_01740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication factor C small subunit"
                     /protein_id="HEX5573228.1"
                     /translation="MPQVEAKNLSDLMWVEKYRPIKLDDIVNQKEIVDSLKNLMKEPA
                     EMPHLLFTGPAGVGKTTTALCMSRQLLGEEWKRDTLELNASDERGIKMVRERVKEFAS
                     VFKIRTSEKDERKFRIIILDEADEMTSEAQTALRRIIEDSSETTRFVIICNYLSQIIE
                     PIQSRCAIFRFKRIEKEIIENHLKSLCKKQGIKYDDKAISQIFESTNGDLRHSINILQ
                     TASVMGSITVSNVLASLGLSGKSKVNDIIKLATSGKFNEARIKLLELTTVYGMSEFDF
                     LKYAYEAVYALKLSHPEDFASLIAEYDYRLTQGSHPEIQLTAFLAQLSRIGAKE"
     gene            complement(6893..7165)
                     /locus_tag="VFX26_01745"
     CDS             complement(6893..7165)
                     /locus_tag="VFX26_01745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573229.1"
                     /translation="MTNTIFRLQSHKFSTDNIQTTLVCSKCDEVFSKEFPLDLEGQTI
                     EFKCPVCNSAGEADLPYKSAEEREELEEDFDEVEEEDGGEEFEEDY"
     gene            complement(7219..7794)
                     /gene="folE"
                     /locus_tag="VFX26_01750"
     CDS             complement(7219..7794)
                     /gene="folE"
                     /locus_tag="VFX26_01750"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003934 - GTP cyclohydrolase I activity
                     [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0042559 - pteridine-containing compound
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I"
                     /protein_id="HEX5573230.1"
                     /translation="MKKTSFNKRKIEKLVRELIVQLGENPDREGLLGTPQRIADMYEE
                     IFAGYCMNSELEISFSEETDSIIAKDIQFYSMCEHHMLPFFGRMHIAYTPSGKVFGIS
                     KLARLVEKYSKILQIQERLTKEVADEIMKMGVKGVTVIAEGEHLCMKMRGVRNNSTII
                     TIANRGLVDQNDARAHLLALIYDSKPKIHTV"
     gene            complement(7813..8550)
                     /locus_tag="VFX26_01755"
     CDS             complement(7813..8550)
                     /locus_tag="VFX26_01755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HEX5573231.1"
                     /translation="MQRTENKARARVNEIFTSIEGEGIFVGKKTLFIRFSGCHLKCRW
                     CDTKYALPLDSGIDYQIDEIKDLIIKELQPFTFKVNFTGGEPLLQTEAVIELADFIKK
                     QTNLKTYMESSCFNSELFRKALPYIDICKVEFKTDDSKVVDDEEYDNLLSNEIKCLEL
                     AVESNKATYIKIVVTNSTNLESFKNLVYNISKKIKPSDILGFVIQPSFGIDQPTVNKL
                     LDTYDIVQPMFPEVRIIPQLHKEIGAR"
     gene            complement(8537..9247)
                     /locus_tag="VFX26_01760"
     CDS             complement(8537..9247)
                     /locus_tag="VFX26_01760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase"
                     /protein_id="HEX5573232.1"
                     /translation="MKNEKIAICIMSGGLDSLCAAAYIKNYKKYKIKIITFSYGQRAK
                     REIIQSKKLAKALNSDEYRSVDINFMKELYGSSNVLTSSKLSIPSKFDQSIVVPIRNA
                     IFITIAAAWAFSENADLIVFGAHIDDFHYPDCRPKFIQSITNTLNIGEEDKIKNGIKR
                     KVSIWSPSMEGITKYELLKLGHEILGDTIFESWSCYSNGKKIHQNVVQCGGCESCINR
                     KMAFSRAGIEDKTIYAKN"
     gene            complement(9237..>9782)
                     /locus_tag="VFX26_01765"
     CDS             complement(9237..>9782)
                     /locus_tag="VFX26_01765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573233.1"
                     /translation="ESRAFGFLFISIAIAVLTGTIINEFLSTHGVPIYFQLLSWILVF
                     ALILGVTFTKMKNLFQSIRNRMKNSIKWPLHAKIINGLSWAGPFLAIPIFHPFSQYLI
                     LLGIGTGNICTFLLIKYYSNYKNKEQFIVGIVSIIMIPVLFLVDVLLSSVLVHQHVLA
                     LSRIFVAISYGVGGIYALNEK"
BASE COUNT         2948 a         1819 c         1587 g         3428 t
ORIGIN      
        1 atcacatatt gttactggtc tggttttgac ctgcctgtgc tctacgattt tttttacact
       61 agagagaaat aggaaggaat tcattactgc gggtagaagt gcaatgacac caataatttc
      121 tgaatttcct gcaattaata tgccagcata cattgatcct aatagcaatg taccagaatc
      181 tccaagaaat attttgcttg gaaatttatg ataatgatat attgcaatac aggcaaagag
      241 taatggtaga ctcatgagga agacattagt attaccaaat agtataacac ttactagtaa
      301 tggtatcata gttattatga taaagccact tgctacgcca ttgaatacat caattgagtt
      361 tatagtatta ccaactatcg gtactaaaga aaaaataagc agaatgtata gcagtggtat
      421 gaatgcacta tcaaatatta agccaagata attcccgtgg gttcctaata ctattatagg
      481 aacggctgcc agtatcaaag ctacaggttt aaaccaacct ggcatagttt tcctgtcatc
      541 aatatatcca atgaaaaatc caataatagt tgttaataaa acagagatta tttttatatc
      601 cggtattaac aaatataata ttatttcagc aattactatt cctatgagca ggataggacc
      661 agcgggtctt ggaatgaacg gttttccagg tttatgatag tctactacca ctctcccttt
      721 cttgttcaga tatttaataa aggcaggcgt aataaagaat ataattaaga atgagacggc
      781 agatacaata atcccatata tgacagtatt taatagataa accaaatttt caatcacatt
      841 ttgtaactat aatgaaagta tctttttgca ctcattttta attcttgatt tgattcttta
      901 gttttcttgc aagtttaact cctatttttg gtacggatcc taattttgat tcagaaatct
      961 tgtcaatttg agtaacattg gtgattcctg atttatatag agaccttgcc ctgattcttc
     1021 caattccctc aagttgtata agcggaatca attctgattt tatgccatgt ctaattctca
     1081 accgtagtat atttatttct actagtaggt cttttcttcc tatcaatttt gcaatttcat
     1141 aaagacagta tgacagccag tacgctgttt caaccatcct gtatagatca ccaggttcaa
     1201 ccccaatttt ttcatttaaa ttggcttcag ttgattcatc gatccactct aacagaatta
     1261 tcaaattctt taaagagtag tcataatttg agagtccata tgaactcagt ttatgttttt
     1321 caaacattct ttcaaagtat tctatttcat tttgccttaa tgtcaacttt ggataaaaat
     1381 cataagagtc acaaatccag tgtaaaaaat ttgttccgtc attaattttg ttactattat
     1441 agtaatccaa atttttcttg aagtgaatac ctgtttttgg atcgatatat aacaaggaag
     1501 tgcgtttacc aaatttagta gccattagta actcattcct catgattatc aatccctcgt
     1561 ctctcagata ctgcaaaagt gaatcaattt caaagctaat agtatcattt ccgtggtatt
     1621 tagagaggaa tgtttcttca aaaaaggaaa gtaattcaga ctttaatatt ttaggtcttg
     1681 aagctatcac tcctagaaca tgcactctta atgccctttc gttcattaac tgggacacga
     1741 ttggttctgg ttctcctaat acaaaatgat tgtaaagatc ttctggattg gttcttgaat
     1801 ctgcgattat gatagcttct ccatatttat cataagcagg tcttcctgca cgtccgcata
     1861 attgtttgta ttgtaatata ctcaatggaa tattaccgcc atattcataa tcgtatctaa
     1921 aaatactggc gattacaaca cgtctagcag gcagattaac tcctgcggcg agagtcgggg
     1981 tggcaaatag aatctttatt atgccatttc taaaggcatt ttctacaatt tgtctgcttt
     2041 ttattcctaa acctgcatga tgaaatccta caccttttgt aacagtactt gaaagtgttc
     2101 tattaagttc tgtatcatct ccttgtttca aaatttctac acctattttg tgggctgaaa
     2161 gttttgaaga tttatcgaga aattttgaca cagtgtccga tgtttttttt gccagtgaaa
     2221 cagtacgttt acgcgtctct gcaaaaacaa gtgattgtcc tccatcattt gtaatcgaat
     2281 ccattgcaag gctaattatt ccactggttg agttgtctac ggctccaata ttatcaattt
     2341 caaaagctgt accattattc atggtaactt taccataatt ataaacacct tctatcaatt
     2401 cagtagggcg ccacttgctt tgaatttgtt cgcatcgtaa ccaatcagcg acttcatctg
     2461 aatttgatac cgtcgcgctt attccaatta tttgaggtct ttgcggcatt agtttgattt
     2521 ttgtcaacat aatttccaga gttggacctc gttcacgttc tgtaagcagg tgtatttcgt
     2581 caataatgaa gagaccgaca tcgaaaatcc agttagcgtc atgcctcaat attgaatcca
     2641 ttttttcatt tgttagtata ataatatctt tgtcaatcaa ttcggttcca taagagtcat
     2701 aatcgcctgt ggagattgca atatttattt tcctattctt aaaacaactc aaatttttga
     2761 ttatcttaaa ctcattaaat ttttctgtgg ccagcgcttt taatggagta aggtaaacta
     2821 ctttttttcc cttactaaga atatttatca ttcccattaa tcctattagt gttttcccac
     2881 ttgatgtggg agttgtaaca aggatattgt taccattcat cacacctttt gataatgcta
     2941 gttcttgtgg gggatataat gaatcataat ttaataatcg taaaagctcc tgcaaatatt
     3001 ccttcatatg ttcaaattga attaatctat ctaactaata tattaataat aagacatgaa
     3061 aagtttctga ttggaaacaa tcaggatatt gttaaaatca gatagtattc aattcttatg
     3121 cctttgcata aaatccagct cttctctcat atatttgtcc attctgcata gcttttctta
     3181 tgaattcttt ggcttcatct tctgtgaact ttcctgtttt cacgagttca ttaatgaaat
     3241 tcttttcttc aacatcattc ttgtcctctc ctgataaacc gttaaagacg tctgtgaatg
     3301 tctttaattt tgaagtttca ctaagaggtt ttccatgaag aactcccaga tctactttgc
     3361 cagtattaac atctataccg acagtttcta gcatttgtga aacaaggtat attgctctat
     3421 tagcgtcttc agaatcaaca ttatctttca ataacaatct agctcttgca gtagcgaggc
     3481 gtacaagacc ttccagctga cgaggagttg ctgttatcat cccttcggaa tcaacgtttc
     3541 tcatctgcag gtaatatttt cttagaatat caattgcctc agttgtgagc tttggttcaa
     3601 tttgtttggc ataggctaga tatttgcgaa atagatctat ttctataaca gactgggctg
     3661 catgttctat gtctctatga atttcaagta tgtgacttgc gattcgatta tctttttcag
     3721 tatcagcatt atctctgata acgtgaatga tatcaaacct tgttagtaac ggtataggaa
     3781 gtggctctac gttctctgta atatttctaa atgggtcgta tttaccatat ttaggattag
     3841 ctgcggagag aattgaggtt ctagcattaa gtgtggctac tattcctcct tttgcaactg
     3901 aacaagtttg ttgctccata acttcatgga gtgcagatct gtcttcagat ttgatcttat
     3961 caaactcgtc tatacagacg agaccctggt cacccaaaac tacagccccc gcttccagca
     4021 tcataattcc ggatttatcg cgaattactg cagctgttaa acctgcagca gtagtacctc
     4081 ttccagatgt atacagacct cttggtgcta tttttgcagc aaatttgagc atttctgatt
     4141 tggcagttcc gggatctcca acgagaaaga tattgatatc ccctctacga tttgaaccgt
     4201 cggctaattt ttttgttacc gatcctacaa ttagtaaaag aatagattct ttaattattt
     4261 cgtgtccata tacatgaggt gcaaatgatg ctactagctt atcataagca tctggcatac
     4321 tggcaaggga taagatccgt ttttcatctt cgctacttat agctattcta tcaacagttc
     4381 tcccgtcttt gtttcctaca agtccaccaa gatattctat attgttacct tccatgcgga
     4441 gtctgaacaa acttgtcctt acttgtaatg tctgttcttg ttcaatcctg actattccag
     4501 tcaataaaac cctatctcca ggtctgcacc gatctacaag atcatccatt acagtaactt
     4561 ctacataatg cggaagttga cccgcaggca agtcttctgg caattcttga agcctaacca
     4621 gttgaaaatc ggtaaagaga ctattctcag gatccatttc aagctctttt tcagaacact
     4681 gaatacatct tgtaggtttc tttagtgcca gaccttttag ctgggcttcg ttaagtgtat
     4741 tacaattcag acatgcatat gctatctttt tggcaagtgg tttaatttca gaagtcctga
     4801 ccaccatgcc aggaacgctt atcaacttgt taattacatc tgcatttatc tctctaagtc
     4861 ccttttgaac cgaataattt ccaattctta cttttatctt gtctttaatt tcctgagcat
     4921 aatcataatg aatctctcgc aatatcgagt atacagcctt gttaaaagcg tcaaacatct
     4981 catcaggtgt atcagtaatt aattttgtca attctggctt gttcgtatct aaatcaatat
     5041 aatcaaccac aacaaaagta gaacttgatg ccatcatgtt gttaattctg tcaaaatact
     5101 tgtaatttcc ttctctgtcc ttaaatgcgc gcagaaatga ttctaattca tctgatattg
     5161 ccgaagtggt ttgttgtttt tgctcagtca tttacttgcc taacaccgat tctttaaagg
     5221 ccaatgaaga tgtgttaata aaattataaa gctgtttttc ctcagcagat aattttgttt
     5281 ccatttctgc agaaagtgat gaagcagctg ctaatttcac aatttttccc agtctggaaa
     5341 ttacaaaaga attaagtgat accattagag tttctttttc tttttcatta agacttttga
     5401 gaaagtcatc tacacgtatg taaaagtccg catctatacc cgatatgtca tgtggttttg
     5461 atattcgttc tctattcaat gccttagaaa cataacttga catttcatta tcttgaattt
     5521 caattaaatt ttttttcgac aaaatttttg cgagccatct tggcacttgc aagatatcgc
     5581 cttctttagc atcgacatta atatcattaa tagatatttt tatgtcagac ttgactgtga
     5641 ccctaatctc ttcgacaaga tattcaagca agtatgtgtt tcttaagctt tcaaatacgc
     5701 tttgagtaag aatggtggat gatgacatat taggaatata gtcttcgaat agctagtaga
     5761 taaacagtct gaggactgaa tatataactg ataatttgaa catctagtat gccacaagta
     5821 gaggcaaaaa acttgtctga tttaatgtgg gtagaaaaat acagacctat taaattggat
     5881 gatattgtca atcaaaagga aatcgtagat agtctaaaga atctaatgaa agaacctgct
     5941 gaaatgcctc atttgttatt tacaggtcct gctggagttg gcaaaactac tactgctctt
     6001 tgtatgtcaa gacaactact tggggaagaa tggaagagag atacacttga gcttaacgcc
     6061 tccgatgaaa gggggataaa gatggttcga gagagagtta aggaatttgc ctcggtcttc
     6121 aagatcagga cgagtgaaaa agatgaaaga aaatttagaa taataatctt agatgaggct
     6181 gatgaaatga cgtcggaggc ccagacagct ttgcgaagaa taattgaaga tagttcagaa
     6241 actactcgtt ttgtaatcat atgtaactat ttgtcgcaaa ttattgagcc tattcaaagt
     6301 cggtgtgcaa tttttaggtt taagagaatt gaaaaagaaa tcatagagaa tcatttaaaa
     6361 tcattatgta aaaagcaggg aataaagtac gatgataaag caatttctca gatttttgaa
     6421 tctaccaatg gtgatctacg ccattcaata aacatccttc aaactgcctc tgtaatggga
     6481 tcgatcacgg tttcaaatgt gctagcatca ttgggacttt caggaaaatc aaaggtaaat
     6541 gatataatca agttggcaac gtcaggtaaa tttaatgaag ccaggatcaa actacttgaa
     6601 ttaactacag tctatggaat gtctgaattc gattttctaa agtatgcgta tgaagccgtg
     6661 tatgctttaa agttgtccca ccctgaagac tttgcttctc taatagctga atatgactat
     6721 cgtttaactc aggggtcaca tcctgaaatc cagttaactg cattcttagc tcaattgtca
     6781 cggattggcg ctaaagagta gagtaggccc attataatat aagtagaaat tatgaaataa
     6841 attagaacca tcacatcaag attggcaaca ggaagtagtt tgatatcgta aatcaataat
     6901 cttcttcaaa ttcttctcca ccatcttctt cttctacttc atcaaaatct tcttcgagct
     6961 cttctctttc ttcagcgctt ttatagggaa gatccgcttc acctgcagaa ttgcaaactg
     7021 gacatttaaa ttcaattgtc tgcccttcaa gatccagagg aaattccttt gagaaaacct
     7081 cgtcgcattt tgaacatacc aaagttgtct gtatattgtc agtactgaac ttgtgcgatt
     7141 gtagtcgaaa tatggtattt gtcatttctt cctacctatt gaaatagtcc ttttttataa
     7201 ggattattgt aatttttatt atacagtatg tattttaggt ttggaatcgt atatcagagc
     7261 taagagatgt gctcgggcat cattttggtc aactagacca cgatttgcaa ttgttattat
     7321 tgtactgttg tttctaacgc ctcgcatctt catacacaaa tgctctcctt ctgcaatcac
     7381 agttacgcct ttaactccca ttttcattat ctcgtctgcg acttcctttg tgagtctttc
     7441 ttgaatttgc aatattttag agtatttctc taccagtcgt gcaagtttcg atatcccaaa
     7501 gactttgccc gaaggagtat aggcgatgtg cattctgcca aaaaaaggaa gcatatgatg
     7561 ctcacacata ctataaaatt gaatgtcttt agcaataatg gaatcagttt cttcactaaa
     7621 actaatttca agctcagaat tcatgcaata cccagcaaaa atttcttcat acatatctgc
     7681 aattctttgc ggggttccca gtaaaccttc acgatcgggg ttttctccga gttgcactat
     7741 cagttcccta acgagttttt ctatctttct cttgttaaat gaagtttttt tcattttctt
     7801 tttccccttt aattatctag ctcctatttc tttatgtagc tgtggtataa tccttacctc
     7861 aggaaacatg ggttggacaa tatcataagt atctagaagc ttattaacag ttggctggtc
     7921 tattccaaaa ctaggttgaa ttacgaagcc cagaatgtcc gaaggtttaa ttttctttga
     7981 aatgttgtaa accaaattct tgaaactttc aagatttgta gaattagtca ccactatttt
     8041 aatgtaagta gccttgttac tttcgactgc taattccaga catttaatct cgtttgatag
     8101 caaattatca tattcctcat catcaacaac tttagaatcg tcagttttga attcaacctt
     8161 gcaaatatca atataaggta aagccttcct gaacagttcg gaattaaaac atgatgattc
     8221 catgtatgtc ttgaggttag tctgtttttt tatgaaatct gctagttcta ttacagcttc
     8281 agtttgcagt aatggttctc ctcctgtgaa atttaccttg aaagtgaatg gttgaagttc
     8341 tttaataatt agatctttaa tttcatcaat ttggtaatca attccactat ctagaggtaa
     8401 tgcatatttt gtatcacacc atctgcattt taaatgacaa cccgaaaatc ggataaataa
     8461 tgttttcttt ccaacgaata tcccttctcc ctcaatgcta gtaaatatct catttactct
     8521 tgcccttgcc ttattttcag ttctttgcat aaattgtttt atcctctata cctgctctac
     8581 taaatgccat cttcctattt atacacgatt cgcatcctcc gcattgcact acgttttgat
     8641 gaattttttt accattagaa taacaactcc atgattcaaa tattgtatct cctagtattt
     8701 cgtgacccaa ttttaatagc tcgtatttag ttatgccttc catagatgga gaccatatgg
     8761 atacttttct tttaattcca tttttgattt tgtcttcctc acctatattc aatgtatttg
     8821 ttattgattg aataaatttt ggtctgcaat ctgggtaatg aaaatcatca atgtgagcgc
     8881 caaatacaat caaatctgca ttctcactaa atgcccatgc tgcggcaatt gttatgaaaa
     8941 tagcatttct aatgggcact acaatacttt ggtcgaattt ggatggaatt gataatttgc
     9001 tgctggtcag cacgtttgaa ctaccgtaca attccttcat aaaattaatg tctactgaac
     9061 ggtattcatc tgaattcaag gctttggcaa gcttttttga ttggattatc tctcgtttgg
     9121 ctctttgacc ataagaaaac gtaattattt ttattttata tttcttgtag tttttgatat
     9181 aagcagcagc acagagcgaa tccagccccc cactcattat gcatattgca atcttttcat
     9241 ttttcattta atgcgtagat acctcccact ccatatgata ttgcgacaaa tattctagaa
     9301 agtgccaata catgttgatg aactaaaaca gaagaaagta atacatcaac taaaaataaa
     9361 actgggatca taattataga tactattccc acaataaatt gttccttatt cttgtaattg
     9421 ctataatact taatcaaaag aaatgtgcag atgttaccag taccaattcc taagagtatc
     9481 aagtactgtg aaaatgggtg aaatattgga atggctaaaa aaggtcctgc ccagcttaga
     9541 ccattaatta tctttgcatg tagaggccat tttatgctat ttttcattct gtttcttatg
     9601 gattgaaaca gattcttcat tttcgtaaag gttactccca aaatcaaagc aaataccaat
     9661 atccatgaaa gtagttgaaa gtaaattgga actccatgag ttgataagaa ttcgttaatt
     9721 atagttccag ttagaactgc tatagcgata ctgataaaaa gaaagccaaa agctctagat
     9781 tc
//
LOCUS       DASUMD010000067         2126 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_568272, whole genome shotgun sequence.
ACCESSION   DASUMD010000067 DASUMD010000000
VERSION     DASUMD010000067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2126)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2126)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2126
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_568272"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            339..734
                     /locus_tag="VFX26_01770"
     CDS             339..734
                     /locus_tag="VFX26_01770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prefoldin subunit beta"
                     /protein_id="HEX5573234.1"
                     /translation="MSEQEIPPWLREQLTRLQQLQQNLQAIMIQKQQLEAESVEIEKA
                     TEELKKSEQDEAVYKSVGPLLIKTKKDDTLKELDEKKDLANTRLVVLGKQETRVKENL
                     KEVENKINEMIRMGQGQGQAGNLGTKPSA"
     gene            complement(955..1419)
                     /locus_tag="VFX26_01775"
     CDS             complement(955..1419)
                     /locus_tag="VFX26_01775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEX5573235.1"
                     /translation="MYKIDDLDLKILEELSNDASISVPRLSRKININASVVYSRIKRL
                     VKRGIIRKFTILMNDEALGFNVKALTGINMDSKLRDNVLNELFRIPGVTEVSEVTGRF
                     DILVTMNSHSLDEMHELISERVGRIEGVQKTETFIEMRKTTREIPIPPKEQE"
     gene            complement(1506..>2126)
                     /locus_tag="VFX26_01780"
     CDS             complement(1506..>2126)
                     /locus_tag="VFX26_01780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asd/ArgC dimerization domain-containing protein"
                     /protein_id="HEX5573236.1"
                     /translation="PNCTTTGMAITLKPLMDEMGLESVFMTSMQALSGAGRSPGVIAL
                     DIMDNVIPYIPKEEEKVQVETKKILGKFNGNSIIKASIKVSCTCTRVPVMDGHTETVF
                     AQLKKTALPEQVRDSMLNFSKSVSIKDLPSAPADYIIVHEDPTRPQPRIDREVNDGMT
                     TVVGRLRKDTVFENGIKYVLLTHNEKMGSAKGAILLAEMFKSKKMI"
BASE COUNT          690 a          399 c          346 g          691 t
ORIGIN      
        1 tacaaagtag ctgccggtac ttatgatgta aactttgaaa gaacaaagag taaatattag
       61 aatcagaatc accctagacc acctcccccc cgaaatttct tccaatattg caaatactat
      121 cagcagtgca ctaaaacctg aaactagatt tctaaccggc gatgaaaaaa taagcattac
      181 ctcaaagaat gcagtaatct ctcttaatat tggtgcaaat gatttacaat caatacgtgc
      241 aattgttaat acctacatca gattgttgag tttatcgtat atgtctctaa atttataaaa
      301 cgctatagat ttatgatggt aaagtcaagt aataagaaat gagcgaacaa gaaattccac
      361 catggttaag agaacagctc actagactac aacaactaca gcaaaatttg caagctatta
      421 tgatacaaaa acaacaacta gaagcagaat ctgtagagat tgaaaaggcc actgaggaac
      481 ttaagaaatc agagcaggat gaagcggtct acaagagtgt tggtcctcta ctgattaaaa
      541 ccaaaaagga tgatacacta aaggagttgg atgaaaagaa agatcttgct aacactaggt
      601 tggtagttct gggtaaacag gagacaagag taaaagaaaa tttaaaggaa gttgagaaca
      661 agataaatga gatgattcgc atggggcaag gtcaaggaca agcaggaaat ttgggaacaa
      721 aaccaagcgc ctaattatta ctttttgatc ctggataatc gtttaacgta gattaaataa
      781 tcttttctaa cttagggaac acaattcaag ttttgaagtt gtgatatcac tgataatact
      841 ctttacagta taactttcgc aggatatttt ttatcttata atgtatatca caataaagta
      901 atagtagctt accttaattg ggaaacaaat tagtatataa cgctaaattc aaattcattc
      961 ctgttccttt ggtggaatcg gaatttccct cgttgttttt ctcatttcaa taaatgtttc
     1021 tgtcttctgt actccttcta tacgaccgac tcgttctgat atcagctcat gcatctcatc
     1081 caatgagtga gaattcatcg ttactaatat atcaaatcta ccagtaactt cagaaacttc
     1141 cgtaacgcct ggaatcctga ataattcatt caatacatta tctctcaatt ttgaatccat
     1201 atttatccca gttagcgcct tcacgttaaa tccaagcgcc tcatcattca tcaagatggt
     1261 aaattttcgt ataattcccc tcttcactag tctctttatt ctgctgtaaa ctaccgatgc
     1321 attaatattg atttttcttg aaagtctggg aactgaaata gatgcatcat ttgagagttc
     1381 ctccaaaatt ttaagatcta aatcgtctat tttatacata gaaatcacta attatatcgt
     1441 aaattttggg gttaataaat gtattaattt caattttatt taattttttt atcaataatg
     1501 catgtttaaa tcattttttt cgacttaaac atttcggcca acaatatagc accctttgcg
     1561 gagcccattt tttcattgtg tgtaaggagc acatatttta taccgttctc aaatacagta
     1621 tcctttcgca atcttccaac aactgttgtc attccatcat ttacctccct gtcaattctc
     1681 ggttgaggtc tagtgggatc ctcgtgaact atgatataat ctgctggtgc agagggcaaa
     1741 tcctttattg acactgattt ggaaaaattg agcattgaat ctcttacctg ttcaggtaat
     1801 gcagttttct tgagttgagc aaatactgtt tcagtgtgtc catccataac aggtaccctt
     1861 gtacaagtac agcttacttt tatggaagct tttatgatcg aattaccgtt aaattttccc
     1921 aatatctttt ttgtttcaac ctgaactttt tcttcttctt ttggtatata cggaattaca
     1981 ttatccatta tgtctaacgc tatcactcct ggagatcgac ctgccccaga cagagcctgc
     2041 atagaagtca taaaaacgct ttccagtccc atttcgtcca ttaatggctt gagcgttatg
     2101 gccataccag ttgttgtaca gttagg
//
LOCUS       DASUMD010000068         5176 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_568288, whole genome shotgun sequence.
ACCESSION   DASUMD010000068 DASUMD010000000
VERSION     DASUMD010000068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5176)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5176)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5176
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_568288"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            55..2778
                     /locus_tag="VFX26_01785"
     CDS             55..2778
                     /locus_tag="VFX26_01785"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobalamin-dependent
                     ribonucleoside-diphosphate reductase"
                     /protein_id="HEX5573237.1"
                     /translation="MAKEITEIENSSNTNKKPIAQIKKRDKGLVDFNNSKISNAIYKA
                     LMAAGKADYNLAEKLSEKVVQKMDQQFSVLDTNRIPSVEDVQDMVESILIEEGLSETA
                     KAYILYRHERRKIRDEKKKIINKKDLDEVDKSFDINSLRVLASRYLLRDNNNEIIEDP
                     RSLFERVAILVTIPDLLHDSELYSSSDVVVQNITEAEEYYKKIDHFDLKLKIGSHYLN
                     RYHFESLIRHYIHLAKSGHMKISFKDLLRLIAEGQLSKYSDRIIEYNNLMVSKDFLPN
                     TPTLMNAGAKLGQLSACFVLDMKDDMSEIMKSSTDAAMIFKSGGGVGINYSNLRPEGD
                     IVASTSGVASGPISFMRIIDTITDVVKQGGKRRGANMGIMESWHPDIEKFVTAKTKPG
                     IFENFNVSVGIWSDFWESIINENNHKYTLKNPTTQEPIKQIDSHQLLDLITFSAWKSA
                     EPGVIFFDNINKYNPCINVKEGPLRATNPCGEQSLYPYESCNLGSINLANFVKRNIDG
                     KYEFDWQRYEQAIRLSTRFLDNVIDMNKYPVEEIELNTQLTRRIGLGIMGIADLLFTL
                     EIPYNSKEGYEFMNRVAEALSYYSMEESVAIAKARGAFPLFNQTDYVEGKMIPVAGYY
                     EIPKRYHSYDWGSLVEKIEKYGIRNSWTTTIAPTGTLSMIADTSNGVEPVFALVFEKR
                     VTVGRFFYTNRIFENVLKENGLYNDEILTKIANNYGSVRGLPEIPERLQKIFVTAIDV
                     HWTDHLMAQAVWQKWISNAIAKTINMPSDVTVEDIKAAYLLSHEMGLKGVTVYRDGSR
                     HEQVLHITGNDKEKKFIVKPSAHVVDHIHSNIKQDYVMTQVEKVFRESEEIESTDTTI
                     NVSQSKLKMNMTTSPNEYTEYEACPSCNARLIITEGCNMCIECGFSSCMSG"
     gene            2974..3636
                     /locus_tag="VFX26_01790"
     CDS             2974..3636
                     /locus_tag="VFX26_01790"
                     /inference="COORDINATES: protein motif:HMM:TIGR00323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-6"
                     /protein_id="HEX5573238.1"
                     /translation="MIHKYDVYRSPNVGLFTRTNNNTLLLPFGFADTKTNKLKEYLDV
                     EKIIHVSVAGTRLMGPMTVMNNNGILLPSTVSDEEIQILKQTGLNVERLKSKYTAIGN
                     LISANDKGAIVSNLFKGEVDQDIKDTLGVPIQTMSIGGFVQVGSMVVTTNAGAIVHPI
                     ANDAEISRISEILQVEAEPATVNGGSPFLSSGIIANFSSVIVGNLTTGPELIMISRAL
                     KV"
     gene            complement(3727..4659)
                     /locus_tag="VFX26_01795"
     CDS             complement(3727..4659)
                     /locus_tag="VFX26_01795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573239.1"
                     /translation="MDKSELALIFVLMILAVLLLQLQNENVYTFGQTMDTTISNFSNL
                     TMPLKNTTIADTKSKTLFLDLADQKNYSVKTVTYTPKFLCGNVTSNEGPVRPGHYDTD
                     ISILNKQDYPIKILWNVIPNDGNSSNSIIKILEPESSTGFTCGDILPLVTNGKNLLEG
                     FVLLSLPISGNMINAFPDPNNPETSILRSIDELQANLIDVQVFYTANALPELPSEMIF
                     SKIDFRILSDPSGKIPQGLLRQVLEVSLVSSIDQIYDQVLRVKSLLKERFSLSDSEMN
                     AINIQIERSDIDSLFTKDDHAISSSRLSPNIYFR"
     gene            4779..>5176
                     /locus_tag="VFX26_01800"
     CDS             4779..>5176
                     /locus_tag="VFX26_01800"
                     /inference="COORDINATES: protein motif:HMM:NF014749.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase"
                     /protein_id="HEX5573240.1"
                     /translation="MKTNRFFNRDIVSIKDFQRDELEYLFEKTDKMKKLNPKEKDELG
                     KARIMGYLFYEPSTRTRMSFEAAMASIGGSFIGISDLKSSSIEKGESLQDTVRVMDLY
                     SDIIILRHQLDGSSKFAAEISDHPIINGGSG"
BASE COUNT         1818 a          833 c         1001 g         1524 t
ORIGIN      
        1 attatttttt agtaaaataa tatttttaag ctaggcttta gctgtataag cgttatggca
       61 aaggaaatta cggaaattga gaattcttca aacactaaca aaaaaccaat cgcgcaaatc
      121 aagaagaggg ataaaggact agtcgatttt aataactcaa agatttctaa tgccatctac
      181 aaagcactaa tggcagcagg taaggcagac tataatcttg ccgaaaaatt atcagaaaaa
      241 gttgttcaaa aaatggacca acaattttct gttttagata ccaatcgaat acctagtgta
      301 gaagatgtcc aggacatggt tgaatcgatc ctaattgaag aaggtctttc agagaccgct
      361 aaagcctaca ttctatacag acacgagcga cgcaagatta gggatgaaaa gaagaagatt
      421 ataaataaga aagatctgga tgaagtggat aaatcatttg atatcaattc tctcagagtg
      481 cttgcttcac gctatttgtt aagagataat aataatgaaa ttatcgaaga tcctagatca
      541 ctttttgagc gagtcgcaat actcgtaaca atccctgatt tacttcatga ttcagaattg
      601 tattcgagta gtgatgtagt ggttcaaaat atcactgaag ctgaagaata ctataaaaaa
      661 atagatcatt ttgacttgaa actgaaaatt ggcagtcact atcttaacag atatcatttt
      721 gaatcactga ttagacatta cattcacttg gcaaaaagcg gccatatgaa aatcagcttt
      781 aaagatctct tgcggctgat tgcggagggt caattgtcaa agtattctga tagaattatc
      841 gaatacaata atttgatggt ttcaaaggac tttctaccga atactcctac tcttatgaac
      901 gctggagcaa aactgggcca gctttcagct tgcttcgtat tggatatgaa agacgacatg
      961 tcagagataa tgaaatcttc gactgatgca gcaatgatat tcaaatccgg tggaggagtt
     1021 ggtatcaatt attcaaatct tcgtcctgaa ggagatattg tggcatcaac ttctggcgtt
     1081 gcttcaggac caatctcgtt catgagaatc atagatacaa ttactgatgt ggtaaaacaa
     1141 ggtggaaaaa gaaggggcgc aaatatggga ataatggaat catggcatcc tgatatcgaa
     1201 aagttcgtta ctgccaaaac aaaaccaggt attttcgaaa actttaatgt aagtgttgga
     1261 atttggagcg atttctggga atcaataatt aacgaaaaca atcacaaata cacgctcaaa
     1321 aatccaacga ctcaagaacc aatcaaacaa attgattcac accaactttt agatttgatt
     1381 actttcagtg cttggaaaag tgctgaacca ggtgttatat tcttcgataa tatcaacaaa
     1441 tacaatccct gcattaatgt aaaagaagga ccgcttagag caacaaatcc atgtggtgag
     1501 caatcactgt atccatatga atcgtgcaac ttaggttcca tcaacctggc caattttgtg
     1561 aaacggaata ttgatggaaa atatgaattt gactggcaac gctatgaaca ggctatacgt
     1621 ctttcgacca gattcttgga taatgttata gacatgaata agtatccagt tgaagaaatt
     1681 gaacttaata cacaattgac aaggaggatc ggccttggaa taatggggat cgctgattta
     1741 ttgtttactt tagagatacc atacaattca aaagaaggtt acgagtttat gaacagagta
     1801 gcggaggcac tttcttacta tagtatggaa gaaagtgttg caatagccaa ggcaagagga
     1861 gcttttccct tattcaatca gactgattat gtagaaggaa aaatgatacc agtggcgggt
     1921 tactatgaaa ttccaaagcg atatcactcg tacgattggg gttcactagt tgagaagata
     1981 gaaaaatatg gaatcagaaa ctcatggacg actacaatcg cccctacagg aacattatct
     2041 atgatagccg acacttcaaa cggagttgaa ccagtttttg cacttgtttt tgaaaaacga
     2101 gttactgtag gaaggttctt ctatacaaat aggatatttg aaaatgtact gaaagaaaat
     2161 ggactttaca atgatgaaat cctaacaaag attgctaata attacggttc agtaagagga
     2221 ttgcccgaaa ttccagaacg gctacagaaa atatttgtaa ctgccattga cgtccactgg
     2281 actgatcatt taatggctca agcagtctgg cagaaatgga ttagcaatgc aatcgctaag
     2341 actataaaca tgccatcaga cgttacagtc gaagacataa aggcagctta tctattatcg
     2401 catgaaatgg gattaaaagg agtgacggta tatagggatg ggtctagaca cgaacaggtg
     2461 ttacatatca ctggaaatga caaggagaaa aaattcattg tgaaaccaag tgcccatgta
     2521 gttgaccata ttcatagtaa cattaaacaa gactatgtga tgacacaagt tgaaaaagtg
     2581 tttagagaat ctgaagaaat tgaatcaaca gatactacaa taaatgtttc tcaatcaaaa
     2641 ctgaaaatga acatgacgac atctcctaat gagtacacgg agtatgaagc atgcccgtca
     2701 tgcaatgcaa gattgattat tactgaaggt tgcaatatgt gcatagaatg tggttttagc
     2761 tcctgtatgt caggataaac aataaatcca cccacttttt atttttagtg aaaatgtatt
     2821 attattaaca aaatagaaat aataatgagt tattattatg ttaaggaatt ctagatcata
     2881 tatttggctt gaatagataa tttcttatct cagtcgtcca taaggagaaa tattgtcata
     2941 tgatgttcac ttgctggaga gattaagcat ttggtgattc acaaatatga tgtctataga
     3001 agtccaaatg tgggtttatt tacacggacc aacaataata cacttttgct tccatttgga
     3061 tttgcagata caaagacaaa taaactcaaa gaatacttgg atgttgaaaa aataattcat
     3121 gtttcagtag cagggaccag attgatgggc ccaatgacag ttatgaacaa taatggaatc
     3181 ttgttaccat ctactgtttc ggatgaagaa atccaaatcc ttaagcagac aggactaaat
     3241 gtagaacgac taaagagcaa atatactgca attggaaact taatttcagc gaatgataag
     3301 ggggcaatcg tttcaaattt atttaaaggc gaagtggatc aagatattaa agatactctg
     3361 ggtgttccca tccaaacaat gtcaatcggg ggatttgttc aggttggatc aatggttgtg
     3421 actacaaatg ctggtgctat tgttcatcca atagctaatg atgctgaaat tagcagaata
     3481 tctgaaatac tccaagttga ggcagaacct gccactgtca atggaggctc gccattcctg
     3541 tcatcaggaa tcatcgccaa tttcagctca gttatcgtag gtaatttgac tacaggaccg
     3601 gaattgataa tgataagtag ggcactaaag gtatgactaa ttatgaaata cctcttcaag
     3661 tgaaaattaa accatatctg attactggca taccaaacta cagcttgtca attgttatta
     3721 ttaatttcat ctaaagtata tgttaggact tagacgtgac gatgatattg catgatcatc
     3781 tttggtaaaa aggctatcta tatcagatct ttcaatttga atgttaatag cgttcatttc
     3841 agaatctgac aagctgaatc tttcctttaa tagagatttt actcgtaata cctggtcgta
     3901 aatctgatca atactggaca ctaaggaaac ttctaacact tgtctcaata acccttgggg
     3961 tatttttcca ctagggtcac ttaatattct aaaatcaatt ttactgaata tcatttcact
     4021 aggaagttca ggcagtgcat ttgctgtata gaaaacttgt acatcaatca agtttgcttg
     4081 caattcatca atagatctta agattgatgt ttctggatta ttaggatcag ggaatgcatt
     4141 aatcatattg ccactgatgg gtaaagacaa caatacaaat ccttctaata agttcttacc
     4201 attagtaact aatggaagaa tgtctccaca tgtaaatcca gtggagcttt caggttcaag
     4261 aatctttatg attgaattag aagaattacc atcattaggt atgacattcc aaagaatttt
     4321 tatcggataa tcttgcttat taagtatgct tatatcagta tcgtagtggc ctggtcttac
     4381 cggaccttca ttagaagtga cattaccaca caaaaatttt ggagtatagg taacagtctt
     4441 aaccgagtag tttttttggt cggccaagtc aagaaagaga gtctttgatt tagtatccgc
     4501 tattgtagta tttttgagtg gcatagtcaa attagaaaaa ttgctaattg ttgtatccat
     4561 ggtttggcca aatgtatata cattctcatt ttggagttgg agcaataata cagccaagat
     4621 cattaaaaca aagattaatg ctaattcact cttgtccaaa ctgcaaattt taatgaaaaa
     4681 tctctaatat atgctatata gaaaatcatc aaatcatttg cattctgata agaatctttt
     4741 tgtaaagggg gattatcata ttataatagt gataatcaat gaagactaat agattcttta
     4801 accgagacat tgtttcaatt aaggattttc aacgagatga actagaatac ctttttgaaa
     4861 aaacggacaa aatgaagaag ctcaatccta aagaaaagga tgagttagga aaagccagaa
     4921 taatgggata tctgttttat gaaccaagta ccagaactag aatgagtttt gaggcagcaa
     4981 tggcatcaat tggtgggagt tttatcggaa tatccgatct aaagtcatct tcaatagaaa
     5041 aaggagaaag tttacaggac accgtacggg taatggatct ttattcagat atcataatcc
     5101 tacgtcacca acttgacggg tcaagtaaat ttgctgcaga gatctctgat cacccgataa
     5161 ttaatggtgg cagtgg
//
LOCUS       DASUMD010000069         2870 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_568476, whole genome shotgun sequence.
ACCESSION   DASUMD010000069 DASUMD010000000
VERSION     DASUMD010000069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2870)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2870)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2870
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_568476"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..574)
                     /locus_tag="VFX26_01805"
     CDS             complement(<1..574)
                     /locus_tag="VFX26_01805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX5573241.1"
                     /translation="MQKELLVGLLRSRRGIIGVSIIGFLLLLSAVAPLIIPIESYFMW
                     SSPDYWINNPKTAAPSWTNFFGPKDFEHVSLDKNDAKVIAESLEGIRTENYRFEINMQ
                     ADSFPDDIIFLYSVKYSDIPPVLQIDISRPDNNTFTAYYSSLPPASNMNTTFSDRIFS
                     TNEIVREALNQYQSYFNYSISGLEPQVVIFS"
     gene            complement(579..1571)
                     /locus_tag="VFX26_01810"
     CDS             complement(579..1571)
                     /locus_tag="VFX26_01810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX5573242.1"
                     /translation="MFAILFITVILLDSTFDRQQKEAIRNQVIEEVSQGTLKFENSAE
                     RSSYINNQIQFREKTSGLDQDSLNPSTLVHRVISVITFDLGKSSFFTTDYGSSNVKDI
                     IFEKVPKTLLLFTTATICAFVIGIFLGTYVAGKEGSWWDKFNSNSAIFSNSFPSWWIA
                     MLMILIFAFTLHIFPSRATPLSSPSDPTYIVDLLYHMALPLITLIIVSFGGVAYIVRY
                     FLINILNEDFIHAKRTMGISRRKILYSHALRNAGPPIATTVGLALAASFGGAIILEAV
                     FDWPGMGKLYYDAIGLYDVPIIIGLTFISTVIFLVTIFITDISYTLLDPRVKGN"
     gene            complement(1743..>2870)
                     /locus_tag="VFX26_01815"
     CDS             complement(1743..>2870)
                     /locus_tag="VFX26_01815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573243.1"
                     /translation="RNEWTNITTMGPEKRLAVDNDALTWNPYNQRWDEVGENTSKSKV
                     IIHMVYSNWHNGQPMNKADLIYPLYFQYEWSSKTNSSDLTYDPEFASQAQIALKYLRG
                     TKFLNDSNVISFVDYWHFDNKEIADFASVWATSPWEVNAAIERLVKNGIFAYSRSEAT
                     VKNIEWLSLIIPSHAQAIRQELEKMKTERFVPPALKDIVTVDEAIKRYDASIKWITEH
                     NHAIISNGPYEIKNYNPTGRVISLTAFRDSSYPYVKGFWSNYETAKLAKFEKIHYPKI
                     VTRGLPVSISGNVTIGGNHDSNATLTYFIFDKNNHLITQGEGKWIDDKGNFMIAINGS
                     STKAMSIGPNEFELFVKSNYALRPDIYSGIFISTPNLMIKN"
BASE COUNT          897 a          526 c          493 g          954 t
ORIGIN      
        1 ttgaaaatat taccacttgt ggttcaagac cagatattga ataattaaag taactttggt
       61 attgattcaa agcctctctg acaatttcgt ttgtagaaaa gatcctgtct gagaaagtag
      121 tgttcatgtt actcgctgga ggtaatgacg aataataggc agtaaaagta ttgttgtcag
      181 gtctgctaat atcaatttgc aaaactggag ggatatcact atatttaact gagtacagaa
      241 agataatgtc atcaggaaag ctatcggctt gcatattgat ttcaaatcga tagttttctg
      301 ttctaatccc ttctaatgat tctgcaataa cctttgcgtc gttcttatct aacgatacat
      361 gctcaaaatc tttgggtcca aaaaaattag tccaagaagg tgcggctgtt tttggattat
      421 taatccaata atctggacta ctccacataa aataggattc aattgggatg attaatggtg
      481 cgactgcgct caataacaat agaaaaccaa taattgatac tccaataatg cccctacgag
      541 atcttaatag acctaccagt aattcttttt gcaataaatt agttaccttt taccctaggg
      601 tccaacagag tataagaaat gtcggtaatg aatattgtta ctaaaaaaat tactgtggag
      661 ataaaagtga ggccaattat aattggaacg tcatacagtc ctattgcatc ataatagagt
      721 tttcccatgc ccggccaatc aaaaacggct tctagtataa ttgcaccccc aaaagaagcc
      781 gccaaagcta atcctactgt ggtagctatt ggtggtccag cgtttctaag cgcatgggaa
      841 tataaaattt ttcgtctgga tattcccatt gttctttttg catgaataaa atcttcattc
      901 aagatgttta tcaagaaata tctcacaata tatgccaccc caccaaatga aacaataatc
      961 aatgtaatta gtggcaaggc catatgatat agcagatcaa caatataggt aggatcagaa
     1021 ggcgaagaga gaggtgttgc ccgagatggg aatatatgta atgtgaaggc aaagattaag
     1081 atcattaaca ttgctatcca ccatgatgga aagctgttac tgaatattgc agaatttgaa
     1141 ttgaatttat cccaccagga tccttcttta ccagcgacat acgtaccaag aaaaatacca
     1201 ataacaaaag cgcatatagt tgctgtagta aacaacaaaa gagtctttgg aactttttcg
     1261 aatattatat cctttacatt agatgagcca tagtctgttg tgaaaaaaga agatttcccc
     1321 aaatcaaagg ttattacact tataactctg tggaccaatg ttgagggatt caatgaatct
     1381 tggtccaatc cagaggtttt ctctctaaac tggatttgat tatttatgta ggatgatctt
     1441 tcagctgaat tttcaaattt aagtgttcct tgacttactt cttcgattac ttgattgcgt
     1501 atagcctcct tctgttgtct atcgaaagtt gaatctagta gaattacagt tataaataga
     1561 attgcgaaca ataccaaaaa catattaaat gaacggaata gtaaggttct acccagaccc
     1621 aattgctttt actttattag gttatcaata tatcttaata aatgcatcat cttcattcaa
     1681 ctcatatagt gaacgccatc tactttttcg cattgcaaaa aaattccttt tgagttatta
     1741 cgctagtttt tgatcatgag gtttggggta cttataaaaa taccactata gatatcaggt
     1801 cttagtgcat aattgctctt gacaaataat tcaaattcat ttggtccaat tgacattgct
     1861 ttagtagagc taccattaat ggcaatcatg aaattaccct tatcatctat ccatttacct
     1921 tctccttgag ttatgagatg attattctta tcaaaaataa aatacgttaa cgttgcatta
     1981 ctgtcatggt taccaccaat agtgacatta cccgaaatag atactggtaa accccttgta
     2041 actatttttg gataatgaat cttttcaaat ttcgctagtt ttgcagtttc atagttagac
     2101 caaaatcctt ttacatatgg ataagagcta tccctaaagg ccgtgagtga tattactctc
     2161 ccagttggat tatagttctt aatttcataa ggtccattgc taataattgc gtggttatgc
     2221 tctgtaatcc attttatact tgcatcatat ctctttatag cctcgtcaac cgtaactata
     2281 tcctttaatg caggaggtac gaaccgttct gttttcattt tttccagttc ttgccttatt
     2341 gcctgtgcat gactaggtat tatcaatgat aaccactcaa tgttcttgac agttgcttct
     2401 gatcgtgagt atgcaaagat tccatttttt accaatctct ctattgcagc atttacttcc
     2461 cagggagatg ttgcccaaac cgaagcaaaa tcagctattt ccttgttatc aaaatgccaa
     2521 tagtcaacga atgatatgac attactatca tttagaaatt tagtgccacg aagatatttt
     2581 agtgcaattt gggcctgtga ggcgaactcc gggtcatatg taagatcact tgaattagtc
     2641 ttggatgacc actcgtattg aaagtaaagt ggataaatta gatcagcctt gttcatgggt
     2701 tgaccgttgt gccagtttga atataccata tgaatgataa ccttactttt ggaagtgttc
     2761 tctccaacct catcccatct ttggttatat ggattccatg ttagagcgtc attatctacc
     2821 gcgagtctct tttctggtcc catagttgta atatttgtcc attcgttcct
//
LOCUS       DASUMD010000070         2639 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1231885, whole genome shotgun sequence.
ACCESSION   DASUMD010000070 DASUMD010000000
VERSION     DASUMD010000070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2639)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2639)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2639
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1231885"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            113..535
                     /locus_tag="VFX26_01820"
     CDS             113..535
                     /locus_tag="VFX26_01820"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX5573244.1"
                     /translation="MSSSTKIVSIVDDDLDITELFDDAVCDSIDGVSVVSFNDPVIAL
                     EHFTQNKERYALVISDFRMPNLTGLELLKKVKKINSNVRTILVSAYEVEYNAVFQRYM
                     QEGIIDSFIEKPVTINQLCQRVRDEFQVYQIATASQLK"
     gene            complement(1542..2156)
                     /locus_tag="VFX26_01825"
     CDS             complement(1542..2156)
                     /locus_tag="VFX26_01825"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR03724.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KEOPS complex kinase/ATPase Bud32"
                     /protein_id="HEX5573245.1"
                     /translation="MQNYVELLFKGAESNIYLTKWYDKRAISKIRIPKPYRQRMLDQD
                     LRRRRTISESRMINLAKEFGLRTPYIYFVDPFRAEIVMEFISGTRASKVLTSAICFDI
                     GKFVSTLHLYNIIHGDLTPANFIVNRKITMIDMGLSFYSSRKEDKAVDIRLFKEILRS
                     TFHHSFSEFFDKFLEGYKSVNSMELENILERIDEIETRKRYAIS"
     gene            2171..2524
                     /locus_tag="VFX26_01830"
     CDS             2171..2524
                     /locus_tag="VFX26_01830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573246.1"
                     /translation="MFGNKNVVPQVDPNPGEKLVIEEDCSEVKLGSGILSLTNQRIIF
                     EKTEGNLTTLNKKIGNVLLNSTLDKLDKVNSEGLILTKVVVEIGDSKYKFSVFNSKKW
                     AKEIEAQKTLFKKDM"
BASE COUNT          886 a          426 c          475 g          852 t
ORIGIN      
        1 tatgaataat ttctatttga tttcaattta ataaaactta actagttgaa ggtcctttat
       61 acttcgctta tgagagcggt gtttgggttg acagtggagg cctaagcttc cagtgtctag
      121 tagcactaaa attgtcagta ttgtagacga tgatttagat attactgaac tctttgacga
      181 tgctgtatgt gacagtatcg atggagtatc tgttgtgagt tttaatgatc ctgtaattgc
      241 cttggagcac tttacacaga ataaggaaag atatgctctt gtaatttcag attttagaat
      301 gcctaactta accggattgg aattattaaa aaaggtaaaa aaaattaatt cgaatgtcag
      361 aactatactt gtaagcgctt atgaagtaga gtacaatgct gtctttcaac gttacatgca
      421 ggaaggtatt atagattcgt ttattgaaaa gcctgttacc attaatcaat tatgccagag
      481 ggttagagat gagttccaag tttatcaaat agcaacagca tcacaattga aataatgatg
      541 tgaaatccta gtcatagcag caagttcaac tttttgctta gaaattctaa taagtaatat
      601 tatttgagtt agatatttta agggaaagca ttagaatata gattatggtc atatgtccag
      661 gatgtaaaaa agaaatttcc aacccacaga tggaattcca cattggaaaa gaagaaaacg
      721 gaaaccagtt taactacgct gtatgctcgt gtccgggatg taaagtttgt ttaggtatta
      781 tgtctgtata gtcaggctac gaaagataaa gaggtcaaaa taatgagcga tgttagaatt
      841 tcacatagct tgtccgatgt acaactactc gaatatcgca accacatcaa ctccaaaata
      901 caaagttgtt taccaaccaa gtaatgataa tgaaggtaag caggatcaca atatgaaaga
      961 tcaaattaga tgtgacaatt gtgataacaa ttttgacttc tactggtgta ctggacacac
     1021 cattatggaa aataatgtaa agagtcgtga acgctaaatg gcgcttttat tcattcttgt
     1081 atagttatat ggcgtaaagt ttataaaaaa tatgtttcca cgcacagttc ctgaaccgag
     1141 aaacgtgtgc tgtcataaga tgcgtgctct gctttgtata gtagttatag tcttcaaaac
     1201 taaaaactgg aatttacttt tcaatcgcat ttttctgcag attcatccat ctgtgatttt
     1261 gcctatgcat gcggttgacc ctttttaaaa tgcaatcagg agacttagcc atcattattc
     1321 cttatgttat cacaatacgt tacagtctat atctcctgaa tagaaactat aaacggtatc
     1381 gatacccgat ccaaagtcca cagaatcagt cgagaaatcg caaatagtat aagcgtttgg
     1441 atgtatctaa tcattgtcga gtccaccatt aattctatcg gccccttctc cattgatcct
     1501 ccaattcagt gaaataattt aacaaatgtc acatttaata ttcatgaaat ggcgtatctt
     1561 ttccttgttt ctatttcgtc aattctctcc agaatgtttt ccaattccat tgagttaaca
     1621 gatttgtatc cttctaaaaa tttgtcaaaa aattcagaga atgaatggtg aaaagtactc
     1681 ctcaaaattt ccttaaataa ccttatatcc actgccttgt cttctttcct gcttgaataa
     1741 aaagagagtc ccatatctat catggtgatt tttctattta caatgaaatt cgctggtgta
     1801 agatccccat ggattatgtt atagagatga agagtggaaa cgaactttcc tatatcaaaa
     1861 caaattgctg acgtcaaaac cttgcttgct cttgttcctg aaataaattc catgactatc
     1921 tcagcacgaa aaggatcaac gaaataaatg tatggcgtac gtaagccaaa ttcttttgcc
     1981 aaattaatca ttctagattc actgatagtt cttcttcttc tcaaatcctg atcaagcatt
     2041 ctctgtcgat atggttttgg aattctaatt tttgatattg cccttttgtc ataccattta
     2101 gtcaagtaaa tgtttgactc ggctcctttg aacagtaatt cgacgtaatt ctgcaatgat
     2161 aatataacca atgtttggga ataaaaatgt ggtaccacag gtagatccga atccgggaga
     2221 aaaattagtt attgaagaag attgttctga ggtaaaactt ggtagtggga tactaagttt
     2281 aaccaatcag aggattattt ttgaaaaaac agaaggaaat ctaaccactc tgaacaaaaa
     2341 gatagggaat gttttattga attcgactct ggataaactg gataaagtca attctgaagg
     2401 cttgatactt actaaagtag tcgttgagat aggtgattcg aaatacaaat tcagtgtatt
     2461 taacagcaag aaatgggcta aagaaattga agcacaaaaa acattattca aaaaggatat
     2521 gtaaatggtc ataacggatt gaaggcgtga ttttcaatca aattacgaga attattttct
     2581 tcttgcagtg cgatcattaa tgagtaagaa ttttcagcac atattagtaa ttgagtatc
//
LOCUS       DASUMD010000071         3086 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_900441, whole genome shotgun sequence.
ACCESSION   DASUMD010000071 DASUMD010000000
VERSION     DASUMD010000071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3086)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3086)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3086
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_900441"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(213..638)
                     /locus_tag="VFX26_01835"
     CDS             complement(213..638)
                     /locus_tag="VFX26_01835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573247.1"
                     /translation="MNKYVHVLLVFAIVFTAMQLLAWSTAEAGKYPKLRADAGDDFKT
                     FENKEVKLDGSDSKGAFKKFVDFEWELVRVNGAKVQNNQPIEINNNDEKTASFMAPDV
                     PSGEVTYEFKLKVKDEVDREDDDIVTVHVMNQQAPVGPT"
     gene            1377..2585
                     /locus_tag="VFX26_01840"
     CDS             1377..2585
                     /locus_tag="VFX26_01840"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sialidase family protein"
                     /protein_id="HEX5573248.1"
                     /translation="MKVPSYYVFMITLLMMGSSTIAQGSGIETDEKEKPSERLNFVNE
                     TKNLTQNEDDSVYPQISSSSENIYIVWQESVGSYGTSNYDIFFRKSNDSGETFGSPIN
                     LSNNTGFSEHPQIASVGNIIYIVWVDDSSGEREIMFCKSSDSGKTFSNSTIVSQNSMG
                     PNHVELAAEGQSVYIVWNSFDKEMRNIILLSKSDDAGKTFAELREIGKGDIETFPKIA
                     ADADEYFVTWDKENDKDTEILFIKGHKNYNKIHNVTNHSKLNDEGIDGGETQVAANAD
                     HVLVAWTSKMPVDKKHVYISSSMNNGNDFGNSVRLSSINSSNVENIIIDGDSYIVWQD
                     NIYGNQDIFFTKSNMNGTSIDKPINVSNNTGISECPSITVSKNGIHMVWEDDTTGNHE
                     VLYKRLSKFS"
     gene            complement(2622..>3086)
                     /locus_tag="VFX26_01845"
     CDS             complement(2622..>3086)
                     /locus_tag="VFX26_01845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573249.1"
                     /translation="YVFCGSTNPYVLFFDCVKNVPFVGGSIAAVAIMGALFGYYISKL
                     RSFDSIFPNLMMGDFIVTAMYFGASFSAPSTIASKVMIWLFGVWILGMLLAPFNKAHT
                     TLKKVTEYGALVALGTLLTAHFIPFLQEYQSSYTVSMMVTSVLSLFGAGRDR"
BASE COUNT         1056 a          530 c          533 g          967 t
ORIGIN      
        1 tgaatgcatt ctttattatt cctgctcttt ctggaacttc tattgctaat ctattctcca
       61 cacatccacc agtggaaaag cgagttcaaa aactaatgga aatgaaaagt ggagtcaatg
      121 aatgaataaa taaataggta gatgaaactg gacctcagtt tcatcgctat agctacttta
      181 tttggtttct aaatcagcgt ctttctctag cgtcaggtag gtccaacagg agcttgttgg
      241 ttcatcacat gtacggtcac tatatcatca tcttctctat caacttcgtc ctttactttg
      301 agtttgaatt catatgtgac ttcgcctgaa ggaacatccg gagccatgaa cgatgctgtt
      361 ttttcatcgt tattgttaat ctcaataggt tgattatttt gtaccttggc accatttact
      421 ctgaccaatt cccattcaaa atcaacaaat tttttaaagg cacctttgct atcggaacca
      481 tctagtttga cttctttatt ttcgaaggtt ttgaaatcat cacccgcgtc agctcttaat
      541 ttaggatatt ttccagcctc tgccgtactc catgctaaaa gctgcattgc tgtaaataca
      601 attgcaaaaa ccagcaaaac atgtacgtat ttgttcatcc tcataaaatt ctatatctcc
      661 tataaataat cttttcggtg aaatagttca tcaattttgt gcattatttt agactaaaaa
      721 atcagtctct gtaaacccgt acatatattt aaatgaatgt attcttcgat acttaaatta
      781 agaacatgac gttggacttt tcgcacggat ttttaacgcg taatttggtt agcgaagttg
      841 aaatttagat agatcatccc ttggccaaga actgtacatg ctatatttag taaattctaa
      901 gcaggcagtg attattgaaa atcatgtaat ggtttatccc tgtgtagttc tattttcttc
      961 ctaacgtctg ccttgtgttt tttcaagata tgttcattag cacaattgtc gtgcattata
     1021 ccaatttcgc aaaattcaca ggaagtaacg aagtctttat tttttaaaat tctcttacag
     1081 gacttacaaa atttcgtttc aatatcatag attgagaggg gttttaacca agaatcgcgc
     1141 caaagtacac tcaccattaa caatgaaatt tgacatatct tatttattct ttgatttgaa
     1201 ttagaatatc tgatttgtag tagtgattat tatttattta tccctttcta ggtaatgaaa
     1261 ggttagatta ttttaatttc ttatattgat attttattaa caaactaata atataatggt
     1321 caatggatga ttgtgatgta cagataaata tctagaaaga cacaccatca ttaattatga
     1381 aagtgccttc atactatgta tttatgatta cattacttat gatgggatca tcaacaattg
     1441 ctcaaggaag tggtatagaa actgacgaaa aggaaaaacc ctctgaaaga ctgaactttg
     1501 tcaatgaaac aaagaatcta actcaaaatg aagacgattc tgtatatcca cagattagct
     1561 catcatcaga gaacatatac atagtttggc aagaatctgt aggcagctat ggaaccagca
     1621 attatgatat attttttaga aaaagtaacg acagtggcga aacttttggc tcacccataa
     1681 acctaagcaa taacacagga ttttcagaac atccacaaat cgcaagtgtt ggaaatatta
     1741 tctacatcgt atgggtagat gattcatccg gtgaaagaga aataatgttc tgtaagagct
     1801 ctgacagcgg caagacattt tctaatagta ctatagtaag tcagaattca atgggtccaa
     1861 atcatgttga acttgcggcg gaaggacaaa gtgtctacat agtatggaat agctttgata
     1921 aagaaatgcg taatatcatc ttattaagta agagtgatga tgcaggtaaa acatttgcag
     1981 agttaagaga gatcggcaaa ggtgacatag aaacgtttcc caagatagct gcagatgcag
     2041 atgaatattt cgtaacatgg gataaagaga acgataaaga tacagaaatc ttattcatta
     2101 aaggtcataa aaactacaac aaaatacata atgtcactaa ccatagtaaa ctaaatgatg
     2161 aaggtataga tggtggcgaa actcaggtgg ctgcaaatgc tgaccatgtg ttagtcgctt
     2221 ggactagcaa aatgccagtt gataaaaaac atgtttatat tagtagtagt atgaataatg
     2281 gtaacgattt tggaaacagc gttcgtctgt cctccattaa ctcgtcaaat gttgagaata
     2341 ttatcatcga tggcgattca tacattgtat ggcaggataa tatatatggc aatcaagata
     2401 tcttctttac taaaagtaat atgaatggaa ccagcatcga taagcccata aatgtgagta
     2461 ataataccgg aatctcagaa tgtccatcta ttacagtatc aaaaaatggg atccacatgg
     2521 tatgggaaga cgatacaacc ggtaaccatg aagtattgta taaaagattg agtaaattct
     2581 cttagtcttg aatttacttt attttagtat cttacataaa tttatctatc tctgccagct
     2641 ccgaataaac tcaggacact agttaccatc atgctaactg tatatgaaga ttgatattct
     2701 tgtaaaaatg gaataaaatg tgcagtaagt aaagttccta atgcaacaag cgctccgtat
     2761 tcggttacct tctttaaggt agtatgggcc ttgttgaatg gagcaagaag catacccaaa
     2821 atccacacac caaataacca aatcattact tttgaggcaa tagttgaagg cgcagagaag
     2881 gatgccccaa aatacattgc agtcactata aaatccccca tcattagatt tggaaatatt
     2941 gaatcaaatg atctgagttt tgaaatgtaa tatccaaaaa gagctcccat gattgcaact
     3001 gcagctatac taccacccac aaatggaaca tttttgacac aatcgaaaaa caagacatag
     3061 ggattagtac taccacaaaa gacata
//
LOCUS       DASUMD010000072         7534 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_790130, whole genome shotgun sequence.
ACCESSION   DASUMD010000072 DASUMD010000000
VERSION     DASUMD010000072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7534
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_790130"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..389
                     /locus_tag="VFX26_01850"
     CDS             <1..389
                     /locus_tag="VFX26_01850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HEX5573250.1"
                     /translation="ILHGHTSTVMVEIIGKMVNNLVIDFSDAKRIIKDTLSTLDHKFF
                     INKKYVYKEDSIHYYVSFNGPRGFFNLQVPKDTTFLMPGEATVENLSSIIIKLLSSKM
                     PPNVEALGVYIYEGVNKGAHILAKIK"
     gene            534..2879
                     /locus_tag="VFX26_01855"
     CDS             534..2879
                     /locus_tag="VFX26_01855"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HEX5573251.1"
                     /translation="MQQKIDEKIWNSNIENAILKNWIDERIYDFKVSGKNNYVIDTPP
                     PYPSGRPWHIGAAAHYAQIDMIARTARMFGNNVYFPIGIDRNGLPVEIYTEKKHKIRM
                     RQTDREEFLNLCRISLDDLEKEMIQIMKSIGLSANFDEYYRTDSNEYRALTQSTFINL
                     WRRGLVYSANRPNNYCPSCGTTIADAEITYEERKTSLVYLKFGIKNENEDLIVATTRP
                     ELIFACQCVIVNPNDTRYEKMHNKQVTLPLFNREVKILPHHSAKSEFGSGVVMVCSYG
                     DLNDVQVFRELGLKEIVAIDQYGRISENGGSYSTLTIDNARKNIIDDLKNGDYIVKEE
                     LILHRIPMCERSKSPVEIIPMQDYYIKQLDFLPKLREFASSLNFYPDSHRQILLNWLD
                     SVAIDWPISRRRFYGTEIPIWYCNKCKEPILPEPGKYYRPWKDKAPFDKCTKCGHNKF
                     TGDERTFDTWMDSSISPLFVTKYGKDNDFFAKTYPTQIRPQAKDIVRTWLYYTMLRCY
                     QLTEKLAWNDVWIMGYGVDEYGEKMSKSKGNVIDPFPIISKHGADTFRFWSAIEANHG
                     QDFRCSEQKIGEAQKFLTKLWNIGRFVSSFEFIPSYEFDLLSSDKWILGELSNLVSEC
                     IKGYKEYNFFIPASQIREFTWNIFASHYLELVKSRAYNDQVPNNRYSALYALHKCFSV
                     ILLLLAPICPFITDKLWTTIYSKESIHLQKFPMKSNDYEEMCKFTKALVDFNSLIWTT
                     KRESTNENGKRYSLRDPIKADIPNELFQFKDDLKEMHNIQG"
     gene            2901..3926
                     /locus_tag="VFX26_01860"
     CDS             2901..3926
                     /locus_tag="VFX26_01860"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HEX5573252.1"
                     /translation="MKAVPIYGHGEVNVLKYEQDFPTPVPNLSEILIRVKYCGLNHLD
                     IWTRMGIPGISIGFPHICGSDIVGSLEDEYLAIPRGSRVLSYPGISCNDCHNCKYGNE
                     TLCRDFSIIGGLSNHNGGYAEYVIVPKTNIIPIPDEISDEQAATLSISYLTAWNIIKK
                     LQLKEDDTVLVYGASGGLGMAMIQISKALGIKIISTVSDDSKLNFAYTIGSDYVINRK
                     KKEIALEIEKITQGAGVDAVVDNAGQKTLQTSISSVRRGGKIAICGTTSGSDANFQIR
                     SFYSKQIQLYGILIGSKSELLELIDFVSEKKVSSKIDSVFPLSDVQQAHNKLERGEQL
                     GKILLKI"
     gene            complement(4009..4641)
                     /locus_tag="VFX26_01865"
     CDS             complement(4009..4641)
                     /locus_tag="VFX26_01865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HEX5573253.1"
                     /translation="MFNLDIGFPVIILVLDLFGTAVFAVTGALRAIEHKYDIVGIIIL
                     ATVTGILGGVMRDTILGIFPPSNFSDTVHIALTTITAIIIFFLYHRTKKHENLFNIFD
                     AVGLGVFTFTGASIAYSLFSTNNVLIVISSLLTAFGGGILRDVFVREPPIVFTKEVYA
                     VASFIGVIIFLILVNLNLQFEYVAIAVIFVTTGIRLVSIKLHWNLPKVKT"
     gene            complement(4717..5085)
                     /locus_tag="VFX26_01870"
     CDS             complement(4717..5085)
                     /locus_tag="VFX26_01870"
                     /inference="COORDINATES: protein motif:HMM:NF042555.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6659 family protein"
                     /protein_id="HEX5573254.1"
                     /translation="MDYSKLCESIFNLNSDIRYVAVIDDTGLPVVGGMRGGLDSIMDE
                     NNEELYLTHTALRKSMRERFDDNMGRSRFAYVEREKISILTFYMDKYILLVTMEPNIN
                     SHTSIDIAEDILDMINGKKQ"
     gene            complement(5199..5750)
                     /locus_tag="VFX26_01875"
     CDS             complement(5199..5750)
                     /locus_tag="VFX26_01875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573255.1"
                     /translation="MSLKDQINSARRIIDIETTKILSDSSLIGYGGCASCHVLFKLIE
                     TLSLNESDAADLLSQVLYEDPQLNERFIEMVEKIHMKERMMGVQFSIKSREAKDRYID
                     ANIKNVISELAVDIKNYGIELVLRKLLLSLVSVQLAQNIGVDHHAATEELYYYMKKNR
                     DTDTSIYEFINKISKIDNNGSYS"
     gene            complement(5907..6302)
                     /locus_tag="VFX26_01880"
     CDS             complement(5907..6302)
                     /locus_tag="VFX26_01880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573256.1"
                     /translation="MSNTSKDYLENLSKEILKINSSLRWIAIADSQGKILNITRREGL
                     DPLMNREENQEYTLNAIARHKSRLKFEDKLGKLVYSLGKYEKLVRIVTPINNKYYVLL
                     TIDVQEPHIDSIMREQIIPKIRDNIRNFE"
     gene            6374..7531
                     /locus_tag="VFX26_01885"
     CDS             6374..7531
                     /locus_tag="VFX26_01885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEX5573257.1"
                     /translation="MDISTSISLVSEYRAIGGFATTEGTKKYMENAIKNGISNSHFRS
                     FDNLNLSSLGMGTYLGQITSEDNRDLENAIYESVKSGAINVIDTAINYRSMKSEKNIG
                     NAIKRLIEERIISRDQVFISTKNGYITNDGDYPTVDVLEYMHNMFISQGIIDSKDISS
                     GYNVLNPNYIRKCIDKSLTNMQLDTIDLVYVHNAYESWVDDISREEFDEMIQKVFQVY
                     EEYRSSNKIKYYGMATWTCFRLSQKEREYLSLEEMVKIAEKVGGKNHGFRFIQLPYNL
                     VYREAYLLKNQSVGVDNGLTILEASNRLNIGVFTSVPLLQAKLFGAKIPDYLGYNDQL
                     LKIVQITRSTPNVIAPLIGQKKPNHVKENIELAKVAPLTSAEFSDAIKIFD"
BASE COUNT         2605 a         1187 c         1351 g         2391 t
ORIGIN      
        1 cgatactaca tggtcacaca tctactgtta tggtagagat cattggaaaa atggtgaata
       61 acctagtcat cgattttagt gacgcaaaaa ggatcattaa agatacactt tcaacattgg
      121 atcacaagtt ctttattaac aagaaatatg tttacaagga ggatagtatt cattattacg
      181 tttcatttaa tggtccacgc ggctttttca acctgcaggt tccaaaagat acaacctttc
      241 ttatgcctgg agaagcaaca gttgagaatc tttcttccat aataataaaa ctactttcct
      301 caaaaatgcc tccaaatgtt gaggctttgg gagtttacat ctatgaaggt gtgaataaag
      361 gggcacatat tctggcaaag attaagtgaa tagtgataat tttcgtgata atatagatga
      421 cactgatgcc ttatggcgat gttgcaaata gcttgtgcct tacatcattt caatttagtt
      481 ctgaagcatg aacttaaata gaagtctcct agtggattag ttctaaccta aagatgcaac
      541 aaaaaattga tgaaaaaata tggaattcta atattgaaaa tgctattttg aaaaattgga
      601 ttgatgaaag aatctatgat ttcaaagttt ctggtaaaaa caactatgta attgataccc
      661 ctcctcctta tccatcagga cgtccctggc atataggagc tgcagcgcat tatgcacaaa
      721 ttgacatgat agctagaaca gcaagaatgt ttggtaataa tgtatacttt ccaattggta
      781 tagacagaaa tggactccca gttgagattt acactgaaaa aaaacacaag atcaggatgc
      841 gacagactga cagggaggaa tttcttaacc tttgtaggat ttcattagat gatctagaaa
      901 aagaaatgat ccaaatcatg aagagtatcg gtctaagtgc taactttgac gaatactata
      961 ggactgattc aaatgaatat cgtgcattaa ctcagagtac atttattaat ttatggagaa
     1021 gaggactggt ttattctgca aatagaccga ataattattg tccaagctgt gggactacaa
     1081 ttgctgacgc agaaataact tatgaagaaa gaaagacaag tctagtatac ttgaagtttg
     1141 gaataaaaaa tgaaaatgag gatttgattg ttgctacaac taggcctgaa ttaatttttg
     1201 catgccaatg tgttatagta aacccgaacg ataccagata tgagaagatg cataacaagc
     1261 aggttacctt gcctttattt aacagagaag taaaaatctt gccacatcat tcagcaaaat
     1321 cagaatttgg ttcgggagtt gtaatggttt gtagctatgg ggatcttaat gatgtacagg
     1381 tatttagaga attgggatta aaagaaattg tcgccataga tcaatatggc agaataagtg
     1441 aaaatggagg tagttattct accttaacca tagacaatgc gagaaaaaat attattgatg
     1501 atttgaaaaa tggcgactac attgtaaagg aggaattgat cctgcacaga ataccaatgt
     1561 gcgaaaggag taaatctcca gtagagataa tcccgatgca agattattat ataaaacaac
     1621 ttgattttct tcccaaactt agagaatttg catcttctct gaatttttat cccgactctc
     1681 atagacagat attattgaat tggttagatt ctgttgcaat agattggcct atatccagaa
     1741 ggagatttta cggtacagaa attcctatat ggtattgtaa caaatgtaaa gaaccaatat
     1801 tgcctgaacc gggaaaatat tatagaccat ggaaagacaa agcacctttt gataaatgta
     1861 ctaaatgtgg acacaataaa tttactggcg atgagagaac gtttgataca tggatggatt
     1921 cgagtatatc acctctgttt gtaaccaaat atggtaagga taatgacttt tttgcaaaaa
     1981 catatccgac acaaattagg cctcaagcaa aagacattgt gagaacgtgg ctatattaca
     2041 caatgttacg atgttatcaa ttgaccgaga aacttgcctg gaatgatgtc tggattatgg
     2101 gatatggagt cgatgagtat ggagaaaaga tgagtaagag taagggaaat gtaattgatc
     2161 ctttccctat aattagtaaa catggagcag acacttttag attctggtca gcaattgaag
     2221 caaatcatgg tcaggacttt agatgttctg aacaaaagat aggagaggca caaaaatttt
     2281 tgacaaaatt atggaatatt ggaagatttg tatcctcctt tgaattcatt ccatcgtatg
     2341 aatttgattt attatcttcg gataaatgga ttttagggga gttatcaaat ctagtatctg
     2401 aatgtataaa ggggtataag gaatataatt tttttattcc tgcttcacaa ataagagaat
     2461 ttacttggaa tattttcgct tctcactacc ttgaattagt aaaatcgcgc gcatacaacg
     2521 atcaagtccc aaataacaga tattcggcat tatatgctct tcataaatgt ttttcagtaa
     2581 tattgttact tttagctcca atatgcccct ttatcacgga caaattatgg actacaattt
     2641 attctaaaga aagtattcat ttacaaaagt ttcctatgaa gagtaatgac tatgaagaga
     2701 tgtgcaaatt tactaaagct ttagttgatt ttaattcgtt aatatggaca acaaaaaggg
     2761 agtcaacaaa tgaaaatggt aagcgatatt cactaagaga tcctataaaa gctgatatac
     2821 caaatgaatt gtttcaattc aaggatgatc taaaggaaat gcataatatt caaggttaat
     2881 tttagaaacc tggtagtttt atgaaagctg ttcctatata cggtcatggc gaagtaaatg
     2941 tattgaaata tgaacaggat tttccaactc cagtaccaaa tctatcagaa attctaatta
     3001 gggtaaaata ttgtggtcta aatcaccttg atatatggac aagaatggga attccaggta
     3061 tctctattgg gttcccccac atttgtggga gcgatattgt aggttcattg gaggacgaat
     3121 atttagcaat tcctagaggg tcaagggtcc tgtcatatcc cggaattagc tgtaatgatt
     3181 gtcacaattg taagtatgga aatgaaaccc tatgtagaga tttttcaata attggtggtt
     3241 taagcaatca caatggcggt tatgccgaat atgtaattgt tcctaaaaca aatatcatac
     3301 ctatacctga tgaaataagt gacgagcaag ctgctacact ttcaatttca tatcttaccg
     3361 cgtggaatat cattaaaaaa ctacaattaa aggaagatga tactgtgttg gtatacggag
     3421 cctctggtgg tttgggtatg gccatgattc aaatttcaaa ggcacttgga ataaaaatca
     3481 taagtactgt ttcggacgat tctaaactta attttgcgta cactattgga tctgattatg
     3541 taataaatag gaagaagaaa gaaatagcgc tagaaataga aaaaataact caaggtgcag
     3601 gagttgatgc agttgtagat aatgcaggtc agaagacatt acagacaagt attagttccg
     3661 ttaggagagg agggaaaatc gcaatatgcg gtacgacatc gggaagtgat gcaaattttc
     3721 agataagatc tttttattca aagcaaatac agctctatgg tattttgatt ggatcaaagt
     3781 cagagttgtt agaattgatt gactttgtaa gtgaaaaaaa ggtttcgtca aaaattgatt
     3841 ccgtattccc attatctgac gtacaacaag cccataataa attagaaaga ggagagcaat
     3901 tgggtaagat tttgctcaag atatgacaaa tcaatccttg ataaggaagg ggaacagttg
     3961 ttgtcttgaa aaattaaagt tatttccctc ggactttcaa attcaggctt aggtctttac
     4021 tttaggtaaa ttccaatgta gtttgataga tactaaccta atgccggtgg taacgaaaat
     4081 tacagcaatt gcaacatatt caaattgtag gtttagattt accaatataa ggaatataat
     4141 gacacctatg aaacttgcta ctgcataaac ttccttggta aaaacgatag gtggttccct
     4201 tacaaataca tctctcaaaa ttccaccgcc aaaagctgtc aataaacttg aaatcacgat
     4261 tagtacgtta tttgtactaa aaagagagta tgcgattgag gctcctgtaa aagtgaaaac
     4321 tccgaggcct acagcgtcaa aaatattgaa caaattttca tgttttttcg ttctatgata
     4381 aagaaaaaaa atgataattg cagttattgt tgtcaatgct atgtgaacag tatctgaaaa
     4441 attacttggt ggaaagattc ccaaaattgt atccctcatt actcccccaa ggatccctgt
     4501 tacggttgca agaattatta tgccgacaat atcatacttg tgctctattg ctctgagtgc
     4561 acccgttacg gcaaaaaccg cagtaccgaa taaatccagt acaaggatta tgactggaaa
     4621 accgatatct aaattgaaca attaaaaatt gctgttaaat tattaatagg gtcaaaaaaa
     4681 ataatcatat tgtactgctg ctacctccaa gatagatcat tgtttttttc catttatcat
     4741 atccagtatg tcttctgcaa tgtcaattga ggtatgggaa ttgatatttg gctccattgt
     4801 tacaagtaag atatacttgt ccatataaaa cgtaagaata gatatcttct ctctttcaac
     4861 ataagcaaat cttgatctgc ccatgttatc gtcaaacctt tctctcatag atttacgcaa
     4921 cgctgtgtgt gtcagatata attcctcatt gttttcatcc ataatagaat ccaagcctcc
     4981 tctcattcca ccaacaacag gcaatcccgt atcatcaatg accgctacat aacgtatatc
     5041 gctgttcaga ttgaatatag attcgcatag ctttgaataa tccatagatt gacaaaataa
     5101 aaactatcta ttatattttt gatcaaaaga tgttttttaa aagcaagtgt caaggctgta
     5161 ttgattttta gatactgtga tatatctaat tctctaattc atgaataact gccattattg
     5221 tctattttag atatcttgtt gataaattca tatattgaag tatcagtgtc tctgtttttt
     5281 ttcatataat agtagagctc ttcagttgct gcatgatgat ctacgcctat attttgtgct
     5341 aattggactg agacgagtga taataatagt ttcctcaaga ccagttctat tccgtagttt
     5401 ttgatatcaa ctgctaattc agaaataaca ttttttatat ttgcatcaat atatctgtcc
     5461 tttgcttccc tgctcttaat tgaaaattga actcccatca ttcgctcctt catatgtatt
     5521 ttttctacca tttcgataaa tctttcattt aattgtggat cctcgtatag tacttgggat
     5581 aatagatctg cagcatcaga ttcatttaac gacagagttt caatcagctt aaacaataca
     5641 tgacatgatg cacatccacc gtatcctatc aacgaagaat ctgaaaggat ttttgtggtt
     5701 tctatatcaa ttatcctcct agcactgtta atttgatctt tgagagacat gttacgaata
     5761 tgacggatat tccttaaaac tttataattt ctcaaaatta gtttttgaat agtagtctaa
     5821 aaactaatga aataagataa cattttttca atatcctgac gatcctgata ggtattcaaa
     5881 ttcatattca caagcagtcc aaatagctat tcaaaattcc taatattatc tcttattttt
     5941 ggaattatct gttctctcat tatggaatca atatgaggtt cttgtacgtc aattgtaagt
     6001 aaaacataat atttattatt tataggagta acaatcctta ccagtttttc atattttcct
     6061 aacgagtaaa cgagtttacc caacttatcc tcgaatttta accttgattt atgtcgagct
     6121 atcgcattca atgtatattc ttgattttcc tcacgattca tcaatggatc gagaccttct
     6181 cttcttgtta tattcagtat cttgccctga gaatcagcta tcgcaatcca tcttagtgat
     6241 gagttgattt ttaatatttc ctttgataga ttctccaaat aatctttact tgtattggac
     6301 attaatatga aattaagacc aatctaaaat ataatgttat ttgctcaatt aactttttca
     6361 attaaaatat aaaatggata ttagtacttc catatcattg gttagcgaat atcgtgccat
     6421 tggtggattt gcaactaccg aaggtacaaa aaaatatatg gaaaatgcta ttaaaaatgg
     6481 tatatcaaac tcacactttc ggtcttttga taaccttaat ttgtcaagtt tgggaatggg
     6541 gacttatctg ggccaaatta catcagaaga taatagggat ttagagaacg caatttatga
     6601 atcagtcaag tcgggtgcaa tcaacgtaat tgatactgcc ataaattatc gttctatgaa
     6661 atcagaaaaa aatattggaa atgcaataaa aaggctaata gaagagagga ttatttcacg
     6721 ggatcaagtt ttcatatcaa caaaaaacgg gtacattacc aatgatggag attaccctac
     6781 ggtcgatgtc cttgaatata tgcacaacat gtttatttca cagggaataa tagattcaaa
     6841 ggatattagc tccggttata acgtattaaa tcccaattat atccgtaaat gtattgataa
     6901 atcgttgaca aacatgcaac ttgatacgat tgatttagtg tatgttcata atgcgtatga
     6961 gagctgggtt gatgatataa gcagagagga atttgatgaa atgatacaaa aggtttttca
     7021 ggtttacgaa gagtataggt caagtaacaa aattaaatat tatggaatgg cgacttggac
     7081 atgttttagg ctttctcaga aagaaagaga atatctctca ttggaagaaa tggtaaagat
     7141 agcagaaaaa gtgggaggaa aaaatcatgg attccgtttt atccaacttc catacaatct
     7201 agtgtacaga gaagcttatt tgctcaagaa ccaatctgta ggtgtcgata atggccttac
     7261 gatcttggaa gcctccaata gattaaatat tggagttttc actagcgtac cattattaca
     7321 agcaaaatta tttggcgcca aaataccaga ttacttggga tataacgatc agttactaaa
     7381 gatagtacaa ataaccagat caactccaaa cgtaattgct ccgttaattg gacaaaaaaa
     7441 acctaatcat gttaaagaaa atattgaact tgcaaaagta gcaccactaa cttctgcaga
     7501 attcagtgac gcgattaaga ttttcgatta acgg
//
LOCUS       DASUMD010000073         5920 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_348081, whole genome shotgun sequence.
ACCESSION   DASUMD010000073 DASUMD010000000
VERSION     DASUMD010000073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5920)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5920)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5920
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_348081"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..528
                     /locus_tag="VFX26_01890"
     CDS             <1..528
                     /locus_tag="VFX26_01890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HEX5573258.1"
                     /translation="SPHALICCVGGGSNAMGTFFPFLDDKDVSMYGVEAGGLGIRTGK
                     HSATLNEGSEGILHGMRTYLLQDEFGQINDTHSISAGLDYPGVGPQHVQLKDIERAEY
                     VTCNDNEALDAFFKLSRLEGIIPALEPCHAVSYAMKLAKKMRRDENIIVTLSGRGDKD
                     IDQVIKFRKKYTGRS"
     gene            532..1368
                     /gene="trpA"
                     /locus_tag="VFX26_01895"
     CDS             532..1368
                     /gene="trpA"
                     /locus_tag="VFX26_01895"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HEX5573259.1"
                     /translation="MSYLQNNRIEKKFSQLKSMKQKGLICYIMGGYPNSAACEKIISS
                     IVDGGADIIEIGIPFSDPIADGPVIQEASYRALQNGITPDKCLNLIKRTRKKYPELPI
                     VIMTYSNILQKNGFRKFMEMAKDAGTDGFVLPDMTIEESKEYLEYSKKLELASIFLVA
                     PNTSNLRIRKTLDVSTGFVYVVSVYGTTGMRNSFNEYTLIAIKNIKKLSSNKKNISVG
                     FGISTPHHIKLMSNYGADAVIVGSAIIKMINSDKVSNIIHLQNKLKNYVKSLKTACTN
                     RQ"
     gene            complement(1383..1706)
                     /locus_tag="VFX26_01900"
     CDS             complement(1383..1706)
                     /locus_tag="VFX26_01900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573260.1"
                     /translation="MTINDFVFSCATDDVPAYFTYEAESMLIVQSKDGAKNKKMDFEK
                     IEEFMSALISHESVHVVIAKLINSQISDSLDDLEIIVERFGKKFQVSLNNMFFSTDFS
                     GIITS"
     gene            complement(1730..4252)
                     /locus_tag="VFX26_01905"
     CDS             complement(1730..4252)
                     /locus_tag="VFX26_01905"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEX5573261.1"
                     /translation="MDLKHVPRVSSALKAVDLVQIPAPLIIGERLNTQGSKKAKKLVL
                     SDDFDGLIDLGREQVNDGAHCIDVCVATTERSDELEFMKKLVKRLSLEIDAPLVIDST
                     DPKVITEAINQIPGRPIINSINLEGDGSRFHTLAPIMAKFGIPSISMCIGPNGMAKTS
                     EDKIKIAKLLIDTGKKYGLKPWQYIFDVLTFTLATGEQEYANSAVETLRGISLVKKEI
                     PGCFTTLGLSNISFGLSSNARKIINSVFLHHALKAGLDTVIINAKDIIPIGEIKEEQI
                     KLAEDLIFNRHTSALSDLIYYFENKNVTVTKNEQRLEEINRDWSFDKRCYYRIVNRIK
                     DGIEDDVVGSISDKLGKKLKEKTENIQKGEMLRKYPELAHDAAVETLNEVLLPAMKEV
                     GDKFGAGELILPFVLKSAECMKSAVSELEKYLIKKQGVSKGKLVLCTVYGDVHDIGKN
                     LVKTIFSNNGYTVYDLGKQVPIQQILDKIKEVQADAVGLSALLVSTSKQMQFFIEKAK
                     ELDLKIPALCGGAAINSDYINRIAKADEVYRAGVFYCKTAFDGLNVMNKLRSPERDKF
                     IQEWNTKISKFDEKKTTGVKTDIASLVSKIKPASPPIAPHLDTPIILTPSEIDLEEVW
                     RYLNKKSLFVLSWGIRGKSASKMIGDPEALLLEWKKKVIDEVLFSPSVVYSYFTCNNQ
                     GNRLVVESKKQGEVAFEFPRSSKPKHLCITDYFGKQDIVAFQVVTVGQKTVSKIEELN
                     SNNNYTDAYYLHGLAVETAEALAEWVHHRIRSELNIDKNRGLRYSWGYPSCPDTMQHY
                     LVWKLIDPTSCGIGLTSAGQITPEYSTAAVVVHHPDAEYFIL"
     gene            complement(4287..5231)
                     /locus_tag="VFX26_01910"
     CDS             complement(4287..5231)
                     /locus_tag="VFX26_01910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homocysteine S-methyltransferase family protein"
                     /protein_id="HEX5573262.1"
                     /translation="MTKSFLDEIQDHILLFDGAMGTEIQKLKPKPEDFPNNKDGFNDG
                     LVISRPEWIENIHRSYLNAGSDCIETNTFGSNQIKLQEYGFGEQTVSINKSAAELANS
                     VVKEFANGKKFVVGSMGPTGYLPSSNDPDLGNVPLNVIIDAFDMQAQGLILGGVDVLL
                     IETSQDILEVKLAIIGSFNAMEKTGKKVPIISNVTLDKYGKMLLGTNVQSAYTTVSDM
                     GISVFGLNCSTGPVEMESSIRWLDEQNELPILVMPNAGMPINEGGNAVYKMTSKDMSH
                     HLGDFLHKYKRVRMIGGCCGTTPEHIRELRNALESYNL"
     gene            5395..5469
                     /locus_tag="VFX26_01915"
     tRNA            5395..5469
                     /locus_tag="VFX26_01915"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5430..5432,aa:Arg,seq:gcg)
     gene            5676..>5920
                     /locus_tag="VFX26_01920"
     CDS             5676..>5920
                     /locus_tag="VFX26_01920"
                     /inference="COORDINATES: protein motif:HMM:NF013595.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573263.1"
                     /translation="MKRIIVIPSTRILAIIWVLSLFIILILTISINTNPTVEAKFVFS
                     KKWGTQGSGNGQFNDPSGITIDSSGRLYVVDTGNNRI"
BASE COUNT         1785 a         1105 c         1050 g         1980 t
ORIGIN      
        1 tctcctcacg ctcttatctg ttgcgtagga ggcggtagta atgcaatggg tacttttttc
       61 ccgtttctag atgataaaga tgtatctatg tacggggttg aagctggtgg tctgggtatc
      121 agaacaggaa aacattccgc cacactgaat gaaggatccg aaggtattct acacggaatg
      181 agaacatatc tattacagga tgagtttgga cagataaatg acacacatag tatttcagct
      241 gggttggact atccaggcgt gggtcctcaa catgtccagt tgaaagatat tgaacgtgca
      301 gagtatgtta cctgtaatga taatgaggct ctggatgcct tctttaaact ttcaaggttg
      361 gaaggaataa tacccgctct ggaaccatgt cacgcagttt cttatgctat gaagctggca
      421 aaaaaaatgc gaagagacga gaacatcatt gttacgttat ccggtagagg tgataaggat
      481 atagatcaag tgataaagtt tagaaaaaaa tacactggca ggtcatagta agtgtcttat
      541 ttacagaata atagaattga gaaaaaattc tctcaattaa aatcaatgaa acaaaagggt
      601 ctcatatgct atataatggg cggctatccg aattcagcag cttgtgagaa aataatttcc
      661 tcaattgttg atggcggtgc tgacattatt gaaataggca ttcctttttc agaccctata
      721 gcagacggac cagtaattca ggaagcgtca tatagagcgt tacagaatgg aatcactcca
      781 gacaaatgtt tgaatctgat aaaaaggacg aggaagaaat atcccgagct tccgatagta
      841 atcatgacat attccaatat tttacaaaaa aatggattca ggaaattcat ggagatggct
      901 aaggatgcgg gaacagatgg ttttgtctta cctgatatga ctattgaaga atcaaaagaa
      961 tatttagagt attcaaaaaa gcttgaactg gcatctattt ttcttgttgc accaaataca
     1021 tcaaatttaa gaataagaaa aacactagat gtttcaacag gctttgtcta cgtagtttct
     1081 gtatatggta ccactggaat gagaaattct tttaatgaat atacacttat tgcgataaag
     1141 aacatcaaaa aattaagctc aaacaagaaa aacatttctg taggatttgg aataagcact
     1201 ccacatcaca taaaacttat gtcaaattat ggagcggatg ctgtcatagt tgggagcgct
     1261 ataattaaga tgataaatag cgacaaagtt agtaatatta ttcatttaca gaataaatta
     1321 aaaaattatg ttaaatcact gaagactgca tgcaccaata ggcagtaaca aaagtagatg
     1381 tattagctgg taataatccc actaaaatct gttgaaaaga acatattgtt taggctgacc
     1441 tggaatttct taccaaatct ttctacaata atttcaaggt catctaagga atcggaaatc
     1501 tgactattaa tcaattttgc tatgaccaca tgtacggatt catgtgaaat caaggcactc
     1561 ataaattcct caatcttttc aaaatccatt ttcttatttt ttgctccatc ctttgattgg
     1621 acaatgagca tgctttcggc ctcataagta aagtacgccg gtacatcatc ggttgcacat
     1681 gagaagacaa aatcgttgat tgtcatttat ctctgaaatc ttactttatc tatagtataa
     1741 aatattctgc atcaggatga tgaactacta cggcagcagt agagtattca ggagttatct
     1801 gacctgcaga agtaagacct attccacaac tagtgggatc aatcagtttc caaaccaaat
     1861 aatgctgcat ggtgtcagga caacttggat atccccaact atatctcaat cctctattct
     1921 tgtcaatatt taattcactt cttattctat ggtggaccca ttctgcaaga gcttcagctg
     1981 tttctaccgc cagaccatga agataatacg cgtccgtata attattgttt gaatttagtt
     2041 cttcaatttt cgaaacggtt ttttgaccga cagtaactac ttggaaggct acaatgtcct
     2101 gtttcccaaa gtagtccgta atacacaagt gttttggttt tgaggatctt ggaaattcaa
     2161 aagccacttc cccttgtttc tttgattcaa ctacaagtct gttcccttga ttgttacacg
     2221 taaagtaaga atagacaaca cttggtgaga aaagcacttc atcaataact ttctttttcc
     2281 actccaggag taatgcttct gggtcgccta tcatcttaga tgcagatttt cctcttatac
     2341 cccacgacag aacaaaaaga gatttcttat ttaaatatcg ccaaacttcc tcaagatcaa
     2401 tttctgaagg tgttagtatt attggtgtat ctagatgggg tgcaattggt ggagatgcag
     2461 gttttatttt actaactagt gaagctatat cagtttttac tcctgttgtc ttcttttcat
     2521 caaatttact aattttagta ttccattcct gaatgaattt atccctctct ggagatctca
     2581 atttgttcat aacatttagt ccatcaaagg ctgttttaca gtaaaaaact cctgccctgt
     2641 acacctcatc tgcctttgca attcgattta tgtagtcact atttatggcc gcaccaccac
     2701 acagtgctgg aattttgaga tctagttcct ttgccttttc tataaaaaac tgcatttgtt
     2761 ttgaggtaga aaccaataat gcagacaatc ctacggcatc tgcctgcact tccttaattt
     2821 tatctagaat ttgttggatt ggaacctgtt taccaagatc ataaacagta tatccattgt
     2881 ttgaaaaaat tgtttttaca agatttttac ctatatcatg tacgtcaccg tatactgtac
     2941 atagaactag tttaccttta cttactccct gtttcttaat tagatatttc tcgagttctg
     3001 atactgcaga tttcatacat tctgctgatt tcaatacaaa aggcaaaatt aactccccag
     3061 ctccaaactt atcaccaact tctttcattg ccggaagtaa tacttcatta agggtttcaa
     3121 ctgctgcgtc atgcgccagt tctggatatt tccttagcat ttcccctttt tgaatatttt
     3181 cagtcttttc cttcaatttt tttccaagtt tatcagaaat tgatcccacc acatcgtctt
     3241 caattccatc cttgatacga tttactatac gatagtaaca acgtttgtca aaactccaat
     3301 ctctatttat ttcttccagc ctttgttcat tcttagttac agtaacattc ttattctcaa
     3361 aataataaat taggtcagaa agagcactgg tgtgtctatt aaatatgaga tcttctgcaa
     3421 gtttgatttg ttcctctttt atttctccta tcgggattat gtcttttgca ttaatgatta
     3481 cagtatcaag tcctgctttt agtgcatgat gcaaaaatac cgaatttatg atttttctag
     3541 cattcgaaga aaggccaaaa ctaatgttgc ttaaaccaag agtggtaaaa caacctggaa
     3601 tttccttttt gactaaagaa attcccctaa gagtttcaac tgcagaattt gcatattctt
     3661 gctccccggt tgctaatgtg aaggtaagta catcaaatat atactgccac ggctttagcc
     3721 cgtatttttt tccagtatcg atgagtagct ttgctatctt gattttgtct tcggatgtct
     3781 tggccattcc atttggacct atacacatgg aaatagaagg aattccaaat tttgccatta
     3841 taggtgcaag agtatggaaa cgcgaaccat ctccctcaag gttaatagaa ttaatgatag
     3901 gccttcccgg aatttgatta attgcttcgg ttatcacttt aggatctgtt gaatcgatta
     3961 cgagaggagc atcaatttca agacttaacc tttttaccaa ctttttcata aattcgagtt
     4021 catcggatct ttcggttgtc gctacacaga catcaatgca atgtgctcca tcatttacct
     4081 gttctctacc aagatctatg aggccatcaa aatcgtctga tagtactaat ttttttgctt
     4141 ttttcgaacc ctgcgtgttt agacgctcgc ctattatcag aggggcagga atctgaacta
     4201 aatctacagc ctttaacgct gagctaacgc ggggtacatg ttttaagtcc atttaatggt
     4261 tatattgtca attgatagtc tgtgaattat aagttatacg attctaatgc atttctgagt
     4321 tctctgatat gttctggggt tgttccacaa caacctccta tcattctcac cctcttgtat
     4381 ttgtgtaaga agtctccaag atgatgagac atgtcctttg aagtcatttt gtaaactgcg
     4441 ttgccgcctt cattaattgg cattccagca tttggcatga caaggatggg caattcgttt
     4501 tgttcatcta accaccttat acttgattcc atttcaactg gtccagttga acaattcaat
     4561 ccaaaaacag aaattcccat gtcgctgacg gtcgtatatg ctgactgaac atttgttcca
     4621 agtaacatct tgccatattt gtccaaggtt acattagata ttattggcac ctttttacca
     4681 gttttctcca tcgcattaaa tgatccgatt atggccagtt ttacttctaa tatgtcttga
     4741 cttgtttcta taagtagaac atcaacacct cctagtatta gtccttgcgc ctgcatatca
     4801 aatgcgtcta tgattacatt cagaggaaca ttacctaaat ctggatcgtt ggaactcggt
     4861 agatatcctg tcgggcccat tgaaccaact acgaattttt ttccgtttgc aaattccttg
     4921 actacactat ttgcaagctc tgctgctgac ttgtttattg ataccgtctg ttcgccaaat
     4981 ccatattctt gaagttttat ttggttactt ccaaaggtat ttgtttcaat gcagtctgaa
     5041 ccagcattca aataacttct atgtatgttt tcaatccatt ctggtctaga tattacaagt
     5101 ccatcattga atccatcttt gttatttgga aagtcctctg gttttggttt gagtttctgt
     5161 atttcagttc ccattgcccc atcaaatagg agtatgtgat cctggatttc atcgaggaag
     5221 gacttggtca tattagatcg atttacataa gttaatcaaa tttatctaca tatattgttt
     5281 gagaaaatgt aattgaaatt atttatcata tattcaatgt aggcatgaat gttgagaaaa
     5341 atgggcatga aatacacaac tagttcatat aaggaattat aattacacat taaggggccc
     5401 atagttcagt ttggatagaa tggctgcctg cggagcagtt ggtcgagggt tcaaatccct
     5461 ctggacccgt accgatatta gtgcttttat gtgggtttta catgtaatat tatgataaaa
     5521 aaattgagaa aaaccaagtt aacagtagag tccgaactag accaacggat attactccat
     5581 gaagttagtt cggaatcgtt tgctcggtga tagatttaga caaagttaca gttaatattt
     5641 aataacgtga ttgatataat gcattccgtt tgttaatgaa acgtataata gtaatcccat
     5701 cgacaagaat tttagcaata atttgggtat tgagtttgtt tattatttta atactaacta
     5761 ttagtatcaa tactaatcca actgtggagg caaaatttgt cttttctaaa aaatggggca
     5821 cacaaggttc gggaaatgga cagttcaatg atccaagtgg tattactatt gactcttctg
     5881 gacggcttta cgtggtcgat acagggaata atagaattca
//
LOCUS       DASUMD010000074         3249 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_16273, whole genome shotgun sequence.
ACCESSION   DASUMD010000074 DASUMD010000000
VERSION     DASUMD010000074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3249)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3249)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3249
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_16273"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            126..1247
                     /gene="mqnC"
                     /locus_tag="VFX26_01925"
     CDS             126..1247
                     /gene="mqnC"
                     /locus_tag="VFX26_01925"
                     /EC_number="1.21.98.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic dehypoxanthinyl futalosine synthase"
                     /protein_id="HEX5573264.1"
                     /translation="MNFFALELVQKSDVSDILDQVLQGKRLALNDCVRLLRSDNTYAL
                     GIIGNIMREKLFGKVATFVNNIILNYTNVCITYCKFCAFYRAPGDSEGYTLSVDDIVK
                     RVVTARDQFGISQVLMQGGHNPELKIEYYEQAFRKIKEKCPDVAIHGLSASEIDTISK
                     VERSSTREVLSRLKESGLDTLPGAGAEILDDDVKSRISPLKIKSDEWLNIMKQAHEMG
                     IKSSATMMYGTGEDYEQRARHLMKIAELQEKTRGFMSFIPWSFEPNNTKMQEDGMIKY
                     PSGGLELLKMIAISRIVFSGLIDHLQSSWLTNGIGMAQLALTYGADDFGGTLIGEEVV
                     SATGARSTELTADKIIAAIKQIGFMAHERNNLYETIRVH"
     gene            1487..2884
                     /locus_tag="VFX26_01930"
     CDS             1487..2884
                     /locus_tag="VFX26_01930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004421 - hydroxymethylglutaryl-CoA
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006084 - acetyl-CoA metabolic process
                     [Evidence IEA];
                     GO_process: GO:0010142 - farnesyl diphosphate biosynthetic
                     process, mevalonate pathway [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA synthase"
                     /protein_id="HEX5573265.1"
                     /translation="MPAGIDDLAIYVPKLYIDYKDFAQARGIDPQKLERGIGIKKMAL
                     VDTNQDAACMASNACLELMKKNNLHPDDIGRLYVATESSLDESKALNSFVVGMLEQVY
                     GDSSFEHAGGIECKFACVSGSYAIYDNTNWIRAEENNDKAAIVVVSDIAKYDVGSAGE
                     YTQGAGAVALLIKENPRLLALDPKVTSTIIKNEYDFYRPFGKETPLVNGLYSNLLYLI
                     QVRKAFDSYKEKAMRTGLIHLKDGESITDYIDLFTVHLPYRRMGEKALAYLLRHEWRT
                     LPRWQHVIKEIGFDEPVPKDSRGTIESILADTEFMKADEQFRKAFMQTSFYNEVYEKK
                     MASSLEASNIIGNLYTASMYMGFRSLLEYEFKKQHDIEGNRVGFGSYGSGSSALVFSG
                     VIQPGYKEIVSDMNLEEEIGPRKKLSMDEYQILRENQRNLNDSYARAKNEFILVKIGG
                     STADKAGFREYCYCS"
     gene            complement(2881..>3249)
                     /locus_tag="VFX26_01935"
     CDS             complement(2881..>3249)
                     /locus_tag="VFX26_01935"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019866.1"
                     /note="catalyzes the formation of 2-oxobutanoate from
                     L-threonine; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HEX5573266.1"
                     /translation="SLAYVLSSGKIKNNQNIISILSGGNIDMYLLGQIVSKGLMQMGR
                     LVKIFIQLPDKPGALKSVVDKIAEISVNIVQVEHDRLSSNVAAGSAGVYLSLELENEK
                     HSRKLLDFLKKEKMVFKVVT"
BASE COUNT         1099 a          518 c          678 g          954 t
ORIGIN      
        1 aactaccagc aatactttgt aacaaattgt ttagatgatg tccgtatcgg ctataaaatc
       61 ttcacttttt aacaatgttt gtaaagaata aatatcgtta ataatcgtca tgaaacatat
      121 agttcatgaa cttctttgcg ctagagttgg tccagaaatc tgatgtaagt gatattcttg
      181 atcaagtttt gcaaggaaaa agacttgcct taaacgactg tgtccgttta ttgagatctg
      241 ataataccta tgctttgggt atcattggaa atattatgag agaaaagctg tttggtaaag
      301 ttgctacgtt tgttaacaac attattctaa attataccaa cgtatgcata acttattgca
      361 aattctgtgc attttacaga gctcctggag attctgaggg gtacacattg tctgttgatg
      421 acatagtaaa gagggtcgtg acagcaaggg atcagtttgg aataagtcag gttttgatgc
      481 aaggaggtca caatccagaa ctcaagatag aatattatga gcaagcattc aggaaaatta
      541 aggaaaaatg tcctgatgta gccattcatg gactttccgc atctgaaatt gataccattt
      601 ctaaggtaga aagaagcagt accagagaag tactgtctag attgaaagaa tcaggattgg
      661 atacattacc tggcgccggg gctgaaattc tcgatgatga tgtaaagtct agaattagcc
      721 ccctgaaaat aaaaagtgac gagtggttaa atatcatgaa acaggcccat gagatgggca
      781 taaaatcatc tgctacaatg atgtatggaa cgggagaaga ttatgaacaa cgcgcaagac
      841 atttgatgaa aatcgcagaa ttgcaagaaa aaacccgtgg attcatgtca tttattccct
      901 ggagctttga accaaataat acgaaaatgc aggaagacgg tatgataaaa tatccttctg
      961 gcggtttgga attattaaaa atgattgcta tttctaggat tgttttttca ggactcatcg
     1021 atcatctcca gtcatcgtgg cttacgaatg gcataggaat ggcacaactt gcattaactt
     1081 atggtgcaga tgattttggg ggcactttaa ttggtgaaga agtagttagt gcgactggag
     1141 ctagatcaac agaactaact gcagataaaa ttattgcagc tattaagcaa attggtttca
     1201 tggcgcatga acgtaataat ttgtatgaga ctattcgtgt tcattaagtc gagtgatata
     1261 taatgctgga ccatactaaa tctgggataa ttcataacta ttaggtttga atttctatgt
     1321 caaactgacg aaagaaggac atgattactt tgacaaacat cttaataata aaagataaat
     1381 gatacatttt tcttaaaaac atgccaattt tttatcgaat ttccttcaat tggagccgaa
     1441 tatcaacaag tacctttaaa tgtctatcat gagaaaaatt attaacatgc cagctggcat
     1501 tgacgacctt gctatatacg ttccaaaatt atacattgac tacaaagatt ttgctcaagc
     1561 aagaggtatt gatccccaaa agctagaacg tggcattgga ataaaaaaga tggccttggt
     1621 ggacacaaat caggatgcgg cttgtatggc atcaaatgca tgcctagagc taatgaagaa
     1681 aaacaatttg catcccgacg atatcggtag actatatgta gcaacggaat caagtcttga
     1741 tgaatcaaag gcattaaact cattcgttgt cggtatgctg gaacaggttt atggcgatag
     1801 ttcttttgag catgcaggtg gaattgagtg taagtttgct tgcgtcagtg gatcttatgc
     1861 aatttatgac aacaccaatt ggataagagc agaagagaat aatgataagg ctgctattgt
     1921 agtcgtaagc gacattgcaa aatacgatgt tggttcggca ggagaatata cgcaaggagc
     1981 aggagcagtt gcgcttttga taaaggaaaa tcccagattg ctagcactgg atcctaaagt
     2041 cacgtcaaca ataatcaaaa atgaatatga tttctatagg ccatttggaa aggaaacacc
     2101 acttgtaaat ggactgtatt ccaatttatt atatttgata caagttagaa aggcttttga
     2161 tagctataag gaaaaggcaa tgagaactgg attgattcat cttaaggatg gggaatcgat
     2221 aacagattac attgatttgt ttacggtgca tttaccatat agaagaatgg gagaaaaggc
     2281 acttgcctat ttactaagac atgagtggag aacgcttccg cgatggcaac atgttatcaa
     2341 agaaataggg ttcgacgaac ctgtgccaaa agatagcaga ggtactatag aatctatttt
     2401 agcagataca gaatttatga aggcagatga acagttcaga aaagcattca tgcaaacctc
     2461 attttacaat gaggtgtatg agaaaaagat ggcaagctct cttgaagcct caaacatcat
     2521 aggaaacttg tacacagcgt caatgtatat gggatttaga agtttgctgg aatatgaatt
     2581 taagaaacag catgatatag aaggtaacag ggtaggattt ggatcctatg gaagtggtag
     2641 cagtgcgttg gttttcagcg gagttatcca accaggttac aaagaaatag taagtgatat
     2701 gaatcttgaa gaggaaattg gaccgcgtaa aaaattatcc atggatgaat atcaaatttt
     2761 acgtgaaaat caacgaaatt tgaatgactc ctatgcgaga gccaaaaatg agtttatcct
     2821 cgtaaaaatt ggtggttcta ctgcggataa agcaggattt agagaatact gctattgtag
     2881 ctaagttacg accttaaaaa ccattttttc cttctttaga aaatctaaaa gtttccttga
     2941 atgcttttca ttttcaagtt ctaaacttag atatacccct gcagagcccg ctgcaacgtt
     3001 tgaactcaaa cggtcatgct cgacttgaac tatattgaca cttatctccg cgatcttatc
     3061 tacgacactt tttagtgcac ctggcttgtc aggcaactgg ataaatatct tgactaatct
     3121 tcccatttgc attaatcctt ttgatactat ttgacctaat agatacatgt caatattacc
     3181 tccagaaagg attgaaataa tgttttgatt attttttatt ttaccactcg aaagaacata
     3241 ggctagact
//
LOCUS       DASUMD010000075         3525 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_237669, whole genome shotgun sequence.
ACCESSION   DASUMD010000075 DASUMD010000000
VERSION     DASUMD010000075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3525)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3525)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3525
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_237669"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            301..603
                     /locus_tag="VFX26_01940"
     CDS             301..603
                     /locus_tag="VFX26_01940"
                     /inference="COORDINATES: protein motif:HMM:NF014032.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0048500 - signal recognition particle
                     [Evidence IEA];
                     GO_function: GO:0008312 - 7S RNA binding [Evidence IEA];
                     GO_process: GO:0006614 - SRP-dependent cotranslational
                     protein targeting to membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle subunit SRP19/SEC65
                     family protein"
                     /protein_id="HEX5573267.1"
                     /translation="MKDYDHQIVWLDYFNKNLSRKKGRKVSKNISVYDPTMQELISAS
                     KTLELDFSEEDINNQARYPRRAFVKSGYIMISKRDKKSSIVNQIAKEMIEARQQKH"
     gene            742..1035
                     /locus_tag="VFX26_01945"
     CDS             742..1035
                     /locus_tag="VFX26_01945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573268.1"
                     /translation="MEKIGEIIHLAKSGRLIVKIEENANHNLIGQALIDDKGTKVGKI
                     IELIGSIKSPYASVIPTLNSKYSVGGKVYKSHNLNHQYNSSKKRNKTKRRKMK"
     gene            1032..2108
                     /locus_tag="VFX26_01950"
     CDS             1032..2108
                     /locus_tag="VFX26_01950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TFIIB-type zinc ribbon-containing protein"
                     /protein_id="HEX5573269.1"
                     /translation="MTSVEYCSQCPECQSKIILDYGKGEYVCHKCGCVVMEQVDYYGP
                     ENNSTDFEERNKNTRASGSTSLSLHDFGLRTEIGNSSRDYSGRIIDYQNVELMNRSRR
                     WHSRLRVNSSKERRLSNVLSKINEVCSVLCLRKTITETASMIYRNFETNSKAKGKSIT
                     CIASATIYLACKRCGVVRSIEEIVQAAGISEFDKSSVKLASRYYRSMVMEMNKIDESK
                     IRTDTSSLTYESNESEPQILFTDPKSNSMPASNSHTSAAPSMFAIDNYISKLANIAKI
                     DTKIERLALEIAQKTNNNFFSDGKAPNGLAAAYIYLASVLLGVNLLQIDVSNFAGVTE
                     VTIRNRCKDILNNFKLVVNAKPVN"
     gene            complement(2145..>3525)
                     /locus_tag="VFX26_01955"
     CDS             complement(2145..>3525)
                     /locus_tag="VFX26_01955"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
                     /protein_id="HEX5573270.1"
                     /translation="TTGKGSQEIKLRLLASLFNDSSPQECKYIIRFALGTLRLGIADI
                     TIMDALALAYTSDKKNRKVLESAYNVSSDLGRVSKILVNDGIKAVSEIRIEIFIPIRP
                     MLAERVQTSKEALEKVSGKGAVEFKLDGERVQIHRKDKKVEIFSRSLENITHYYPDVA
                     EVSRTITLRNFIIEAEVVAINKFTDEFLPFQELMHRRRKYDIAKNVENYPISVNVFDV
                     LWASGRDKTKLPYVKRRELLKDVITNSEDRKLTLIHQKIVTSVEELDNFMAKSIEYGC
                     EGLVVKQINSPYRAGARGFAWTKIKREYRSELVDSLDLVIIGGSHGKGRRVGKYGALL
                     LAIFDKHENVFKSVCKVGSGFTDEILEELFKELGKYKIPKKHPRVYSKLEMDTWFVPT
                     IVIEIIASEITLSPEYDACMDSIRKGFGLSLRFPKFTKKIRLDKNPQDITDESELIQM
                     YKRQRNVKL"
BASE COUNT         1172 a          632 c          604 g         1117 t
ORIGIN      
        1 ctccagaaga gcttgaaatc aaatctgttt gagcctgcga ctcttcggtc gctgcaaatg
       61 ttagcccgat aggctgtttc acgaggttag caatttttgc cgactactac agccgaaagc
      121 tctaccaggc tgagctaccg cgggacattt ttggtaatga attctgccta tataaaataa
      181 ttgaatatgc gaatctaaaa attatatact gaaagaatga tgcattatag cctccctatt
      241 gtagacattg tctcataaga gtcaaaataa ttaattatgt gaaaaaacat aatgaccgta
      301 atgaaggatt acgatcatca gatagtatgg ttagattatt ttaacaaaaa tctatcccga
      361 aaaaaagggc gaaaagtaag taaaaatatt tctgtttatg atcctacaat gcaagagctg
      421 ataagcgcat caaaaactct agaattggat ttttcggaag aagatattaa taatcaggca
      481 cgttatccaa gaagggcctt cgtaaagtca ggatatatta tgatctcaaa aagggacaag
      541 aagtcatcta ttgttaatca aattgcaaaa gagatgattg aggcaagaca gcaaaagcat
      601 tagtatgttt ctacgccatc ctgaaactgg cctcaaacga acctaattca aatctaaatg
      661 atagatttta tttatcttga aactaacttt tattgacaga ttaaaatgat aatgagtgtg
      721 caataggtgt taatacaaat aatggaaaaa ataggtgaaa tcatccactt ggccaagagc
      781 gggaggctaa tagtcaaaat tgaggagaac gctaaccaca atttgattgg tcaggcacta
      841 attgatgata aaggtaccaa ggttggaaaa attattgaat taataggctc gatcaaatca
      901 ccatacgcat ctgtaattcc aactctaaat tcaaagtata gtgttggcgg aaaagtgtac
      961 aaatcgcata atctcaatca tcaatataat tcgtcaaaaa aaaggaacaa aacaaagagg
     1021 aggaaaatga aatgacatct gttgaatatt gctctcaatg tccggaatgt caatcaaaaa
     1081 ttatccttga ctatggcaag ggtgagtatg tgtgtcacaa atgcggatgc gtagttatgg
     1141 aacaagtcga ctattacgga cccgaaaaca attcaactga ttttgaagaa agaaacaaga
     1201 atacaagagc aagtggttcg actagtttgt cactacatga ttttggatta aggactgaga
     1261 taggaaatag ttcgagagat tatagtggac gaattataga ttatcaaaac gttgaactca
     1321 tgaataggtc tcgtagatgg catagcagat taagagttaa ttcttcaaaa gaaagaagac
     1381 tatcaaatgt cctttcaaaa attaacgaag tatgttctgt tctctgtctg agaaaaacta
     1441 taactgaaac tgcgtcgatg atttaccgta attttgaaac taatagtaag gcaaagggaa
     1501 agtctattac gtgtattgct tcagccacga tttatttggc ttgcaaaaga tgtggtgttg
     1561 ttagatcaat agaagaaatt gttcaagcgg caggtatatc agaatttgac aagtcaagcg
     1621 taaaactagc ttccagatat tacagatcga tggtaatgga gatgaacaaa atagacgaat
     1681 caaaaattag gacggacacg tcttcactga catatgagtc aaatgagtca gaacctcaga
     1741 ttttattcac agatccaaaa tcaaattcca tgccagcatc caattctcat acctctgcgg
     1801 ccccttctat gtttgcaata gataactata tttcaaaact tgctaatatt gcaaaaatag
     1861 atacaaaaat agaaagatta gcgctcgaaa ttgcccaaaa aacaaataat aatttctttt
     1921 cggacggcaa agcacccaat ggactagccg ctgcatatat ttaccttgca tcagtattgc
     1981 taggagtaaa tcttcttcag atagatgttt ccaattttgc tggtgttact gaagtgacta
     2041 tcagaaatag atgcaaagat atattgaata atttcaagct agttgtaaat gcaaaaccag
     2101 tcaactagta tgggtaaaga atcacacaat aggattactc tagattataa ttttacgttt
     2161 ctttgtcttt tgtacatttg aataagttca gattcatctg taatgtcttg cggattctta
     2221 tcgagccgta tttttttggt aaatttcgga aatcttaagg acaatccaaa accttttctg
     2281 atagaatcca tgcacgcatc gtattcagga cttaatgtta tctctgatgc tatgatttca
     2341 attactattg taggtacaaa ccaagtatcc atttctagtt ttgagtagac acgtggatgt
     2401 ttctttggta ttttgtattt tcctaattct ttaaacaatt cttcaaggat ttcatctgta
     2461 aatccacttc caactttaca tacacttttg aaaacatttt catgtttatc aaagatggca
     2521 agtaacagag caccatattt gcctactctt cttcctttgc catgagaccc ccctattatt
     2581 accagatcca aactatcgac taattcactt ctatattctc ttttaatttt tgtccatgcg
     2641 aaacctcttg cccctgctct atatggacta ttgatctgtt tgacgaccaa accttcacaa
     2701 ccatattcta ttgatttagc catgaagtta tcgagttcct ctacactagt tacaatcttc
     2761 tgatgtatga gcgttagttt gcgatcctct gaattagtaa taacatcttt caataactcc
     2821 cttcttttta cataaggtag ttttgtttta tctctacctg aagcccagag gacatcaaaa
     2881 acatttacag aaataggata attttctacg ttctttgcta tatcatattt cctacgtctg
     2941 tgcatgagtt cttgaaatgg aagaaattcg tctgtaaact tattgattgc aactacttca
     3001 gcctcaatta tgaaatttct cagagtaatg gtccttgaaa cttcagcaac atcgggataa
     3061 taatgtgtga tgttttctag gctccttgaa aatatctcca ccttcttgtc ttttctatgt
     3121 atttggaccc tctcaccatc gagcttaaat tctactgcgc ccttaccgga caccttttcg
     3181 agtgcctctt tacttgtttg aactctttct gcaagcattg gtcttattgg tataaatatt
     3241 tcaatcctaa tttcagaaac agcttttatt ccatcattta ccaatatctt ggaaactctt
     3301 cccaagtcgc ttgagacatt ataagcgctt tctaaaactt ttctattttt tttatccgag
     3361 gtgtatgcta aagctaaagc atccattatt gtaatatcag cgattccaag tcttagagtt
     3421 ccgagtgcaa atctgataat atatttacac tcttgaggag atgaatcatt aaaaagactc
     3481 gctaacaatc ttaattttat ttcttgtgat cccttcccag tagtt
//
LOCUS       DASUMD010000076         9120 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_459100, whole genome shotgun sequence.
ACCESSION   DASUMD010000076 DASUMD010000000
VERSION     DASUMD010000076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 9120)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9120)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9120
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_459100"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            181..876
                     /locus_tag="VFX26_01960"
     CDS             181..876
                     /locus_tag="VFX26_01960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573271.1"
                     /translation="MAISIVSVAFFLYRYESVTVNFFPQNSDLIYQGIFTNATSLAEL
                     GNTSKSLGLSNMSEQQSNTSVVSPNNSTNLTIEDLVSLSNPVDTLTKMIINVLENTSV
                     ADTQNGKDLGLKNYYELGGSWNLVIRGDEFSNFTGLIRLNNTLNNITKNYDIKLVTST
                     ANNITYQASNQILKIKGTGDLTLDDQTTKVQLLVILYKNENIYVVFASKTEENLFDNF
                     LIHGNILEREFEY"
     gene            complement(903..1301)
                     /locus_tag="VFX26_01965"
     CDS             complement(903..1301)
                     /locus_tag="VFX26_01965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX5573272.1"
                     /translation="MTFKRLGAVILLVSDIDKSMKFYRDVLELPVKNTSPEWVEFFSS
                     GTVLALHPSKNKTRTKNSGVLVGFMVSNLESVAQKLKDKNVEFFKKPKEESFGKHAII
                     VDPDGHLISIAEISSKSSEGFDLIGLIGAE"
     gene            1423..2448
                     /locus_tag="VFX26_01970"
     CDS             1423..2448
                     /locus_tag="VFX26_01970"
                     /inference="COORDINATES: protein motif:HMM:NF028222.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HEX5573273.1"
                     /translation="MLTVKVVDKKVTLVESELQKVNEDEMLVRMQSCGICGSDLEKVY
                     GNYGMRSLRVGHEPAGVVVKVGKNLKKFQEGDRVFVHHHVSCYSCRYCLQGNYTMCNN
                     YQTSNIEPCGLSEEFIVPKWNIEHGGVLKLPESISYDEAAMIEPFACCIRGLNKISIK
                     HGDNVAILGAGPTGVMHSLLARLWGANNIVISDINEFRLKFVEKYGVITVNLNLEKLD
                     DVINNNTESLGVDITILATGSMKAFESSLRITRRGGKILLFGVPSVGSKFDLDLNSLY
                     SKEQIIIPSYGASEIETNQALSLMSDKSIDLLPLVTHRFQLRESDNAFKCAHEAVDAM
                     KVLVVTS"
     gene            2496..3314
                     /gene="lsrF"
                     /locus_tag="VFX26_01975"
     CDS             2496..3314
                     /gene="lsrF"
                     /locus_tag="VFX26_01975"
                     /EC_number="2.3.1.245"
                     /inference="COORDINATES: protein motif:HMM:NF006081.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxy-5-phosphonooxypentane-2,4-dione
                     thiolase"
                     /protein_id="HEX5573274.1"
                     /translation="MDWGLKNRLSRIINQQDGKGVMLAVDHGYFLGPTERLEDPEKTI
                     KPLLKYADSLMLTRGVLRTSVAPESNIPIVLRVSGGTSILGEDLSKETITTSIEEAIR
                     LNAACLALSIFVGGKYEHQTLSNLSKLVDEGEKYGIPVLAVTAVGKEMARDSRYLGLS
                     CRIAAELGAHLVKTYYCEKFEEVVEGCPVPVIIAGGKKLPEKDALNLTFNAIRDGASG
                     VDMGRNIWQSDHPIEMIQAVRAIVHDGLSVEESFNSFFLEKGLRSNKLETLNTR"
     gene            3348..3473
                     /locus_tag="VFX26_01980"
     CDS             3348..3473
                     /locus_tag="VFX26_01980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573275.1"
                     /translation="MSEYEGGTFRCKVCAKEFLTKNECDAHYDDIHGDEVANIGE"
     gene            3561..4799
                     /locus_tag="VFX26_01985"
     CDS             3561..4799
                     /locus_tag="VFX26_01985"
                     /inference="COORDINATES: protein motif:HMM:NF013922.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573276.1"
                     /translation="MKTANVILFEIGICALEDSNLIYKRKFDNPVVEYSSIIQSQDNY
                     IIDLISMLRNYDQVRVNNKNLIEIFQRENFDVKLMSDSSQNEINLNKLDLIIKFGLSD
                     NKDELAAILQKFAINLSSMKVKEISEKLDLHLVQAVNTLDELDEIINTISTRIREWYG
                     LHFPELDYLLQNIITYSNIVRDAGSRENISKELLTQLEVPEKKIEMIQLAISKSQGGD
                     LTVESSESLKILASQVIKLSELRTNLSNTIENLMEKLAPNLKNILTATIGARLIAKAG
                     SLIRLAQMPSSTIQIIGAEKALFRALKTGTRPPKHGLLFQHPSVNSAPKWQRGKIARA
                     LSSKIAIAVRIDVYRNASLDNSLLDKLTKRIETIQKIYHEPPKGKESFEDRGRFMNRR
                     PNRSMKFKRRKTRHEKRRRH"
     gene            4777..5451
                     /locus_tag="VFX26_01990"
     CDS             4777..5451
                     /locus_tag="VFX26_01990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibrillarin-like rRNA/tRNA
                     2'-O-methyltransferase"
                     /protein_id="HEX5573277.1"
                     /translation="MKNVDAISYVTVNGKEHIATINLLKGVTLYGEKLISRNGNEYRT
                     WDPFRSKLAAAYIKGLHFDFSNVGNVLYLGASTGTTVSHLSDIVGHSGKIFAVESSTR
                     VARELISNVSSKRTNVIPIIEDARKPRSYFSIYDKMDLVYCDIAQPDQTTIAIDNCKI
                     YLKEAKPMLLVIKTRSIDVTMSPKNVISQEIKKLESNSFEIKQKIDLEPFDKDHAMIN
                     TVFYPK"
     gene            complement(5458..6090)
                     /gene="rnhB"
                     /locus_tag="VFX26_01995"
     CDS             complement(5458..6090)
                     /gene="rnhB"
                     /locus_tag="VFX26_01995"
                     /inference="COORDINATES: protein motif:HMM:TIGR00729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HEX5573278.1"
                     /translation="MICGVDEAGRGSLLGPIIVAGICVTKKSISELIKCEIKDSKLLT
                     PKKRQTLFGHIVNIAESICICRISIEDIDFHVFRNNLNLLEAEAMAITIGNMKSDKTY
                     VDSCDVNPSRYQRTISSFLKRNNTKLISMHHADRLNVAVSGASIIAKVIRDSEISKIR
                     TKYGDIGSGYPSDKKTIKFVKEWFRQNNEIPPIARKSWKPAQLIVSGTSH"
     gene            6212..7384
                     /locus_tag="VFX26_02000"
     CDS             6212..7384
                     /locus_tag="VFX26_02000"
                     /EC_number="2.1.1.213"
                     /inference="COORDINATES: protein motif:HMM:TIGR00308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0030488 - tRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanine(10)-N(2))-dimethyltransferase"
                     /protein_id="HEX5573279.1"
                     /translation="MQYDVSRIKEGKTILLVPSSSLTEIVPPKNPAFFNPNAKWNRDI
                     SMLVYKIQASSKYNLTLADSICGVGARGLRASVEVPKIDTIYFNDLNPIAIELAKESA
                     KLNQVGSKCLFGTNDVCKFLNFEERESRKFDIVDLDPFGSPSPYVDCVLRSVSNHGLI
                     SITATDTAVLCGVYPNVCYRKYYGFPIRTEYSNEIGIRILLSFIALNASRFDLSIIPY
                     FCHTNLHYMRVYLRVIFGSSLSNSVSSKIGFLKHCQNCKNRIIENLKEQNLVCEICGQ
                     KCNLAGPLWIDPLYDSEFVDAMLTELEKGGENSMPVNDHNRLLKLMQTCSSELSFPFY
                     FETDRIASMAKKSSISLDKVICILSSNGFKVSKTIMNEKGFKTNATAKEIMNLLYK"
     gene            7471..8256
                     /locus_tag="VFX26_02005"
     CDS             7471..8256
                     /locus_tag="VFX26_02005"
                     /EC_number="7.6.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX5573280.1"
                     /translation="MKLQVKNLSKRFKTSNSNKVEYVTAIENIDLTINDGEFVCITGP
                     SGCGKSTLLNILAGLDKPTEGEIILNGHEINGTGPDRIMVFQENALFPWLKVIENVEF
                     GLKIAGLQKEKRRQIAFAHLETMQLTKFADSYVYQLSGGMKQRVALARALVMDPEILL
                     MDEPFASLDSQTRDLLSVELQLIWSKTRKTIIFVTHNIMESVCLGDRVFVFTNRPGKI
                     KREITIDHRRPRLTEDDELKPYYREVLDELRNEISAARKQKSD"
     gene            complement(8253..9023)
                     /locus_tag="VFX26_02010"
     CDS             complement(8253..9023)
                     /locus_tag="VFX26_02010"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: protein motif:HMM:NF014296.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004489 - methylenetetrahydrofolate
                     reductase (NAD(P)H) activity [Evidence IEA];
                     GO_process: GO:0006555 - methionine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase"
                     /protein_id="HEX5573281.1"
                     /translation="MDINVIYEMNPPKVLYNNHFDIDTINKKIDLFLSRTKRISEYID
                     GIHLTDNVLGVPRVSSLMLVSMLKRMGISKPISCTCRLYDKNLISLLQFVTDAIRCGV
                     YSILILRGDDPVIGNKIFDVPPTKAIKTLSDLSFNKYIKLDLSFPSKFQENVNIKNKL
                     KARPRAFITQSISSIENLKEIVSLSTPYSIDVIPCIMCPSTRNELSAKNIGLDWGSYE
                     EEPENFIREAGNLTDKVLLCSPNSFEDGLDLVKKLKEN"
BASE COUNT         3116 a         1529 c         1700 g         2775 t
ORIGIN      
        1 aaaatataag gaaggagttt tggcaaaata tatgcttctt gctagatctg cgtcagaagg
       61 tgctgtgact ataccgcaat tcaaataggc ttaattgtgc gtgttaatat cagcagaaat
      121 taaatagtca tgatatttag ctataataga aatttcaaaa atcttttcct attgtcaata
      181 gtggctatct ccatagtctc agtggcattt tttttatatc gatatgaatc tgttacggtt
      241 aacttctttc cccaaaattc ggatctaatc tatcagggta tttttactaa tgcaaccagt
      301 ttggctgaac ttggaaatac ttcaaaatct ctgggattaa gtaatatgtc agaacagcaa
      361 agtaatacct ccgttgtcag tcctaataac agcacaaact tgacgataga ggatcttgtt
      421 tcactcagta atcctgttga cacacttaca aaaatgataa taaatgtatt ggaaaatact
      481 tcagtggcgg atacccaaaa tggtaaagat ctaggactaa aaaactatta tgagctgggt
      541 ggctcatgga atctggtaat cagaggtgat gaattttcaa atttcacagg cctaatacga
      601 ttgaataata ctttgaataa tattactaaa aattatgaca taaaacttgt tacctccaca
      661 gctaataata ttacctatca ggcatcaaat caaatattaa aaataaaggg aacaggtgat
      721 ctgacactcg atgatcaaac taccaaagtt caattattgg taattcttta caagaacgaa
      781 aatatctatg tagtatttgc atccaagacc gaagagaatc ttttcgataa tttcttaata
      841 catggaaata tcttggaacg agaatttgaa tattgatttt aggcaattat tctagttttg
      901 gatcattctg cacctatcaa accgattaaa tcaaaccctt cagagctttt ggagcttatt
      961 tctgcaattg aaatcaaatg accatcggga tccactatta tcgcatgctt tccaaaagat
     1021 tcctctttgg gctttttgaa aaactctacg ttcttgtctt ttaacttctg ggctactgat
     1081 tccagattac ttaccataaa ccctaccagg actccagagt tttttgttct tgttttattt
     1141 ttagatggat gtagggcaag cactgtcccg cttgagaaga attctaccca ttcaggagaa
     1201 gtatttttta caggtaattc aagtacatcc cgataaaatt tcatcgattt gtctatgtca
     1261 ctcacgagta agattactgc accaagtctt ttgaatgtca aagtactcca aaataattga
     1321 ctctgaatta ataacttatc gattctagat tgaaaatcaa gctctatcag agtaaattat
     1381 attaaatttt taatttacat atgtcatgaa agtggatttc agatgttgac agtaaaagta
     1441 gttgataaaa aggtaacttt ggttgaatca gaattacaaa aagtaaatga agacgaaatg
     1501 ttagtaagga tgcagtcatg tgggatttgt ggatcggatt tagaaaaggt ctacggaaat
     1561 tatggaatga ggtcattgcg ggtaggacat gagcctgctg gagttgttgt taaagttggt
     1621 aaaaatctga aaaaatttca ggaaggcgac agggtttttg tacatcatca cgtaagttgc
     1681 tattcatgca gatattgttt acagggcaac tatacaatgt gtaacaacta tcaaaccagc
     1741 aacattgaac cctgcggatt atcggaggaa tttattgttc caaaatggaa tattgaacat
     1801 ggaggtgttt tgaaacttcc tgaatcaata tcatatgacg aagcagcgat gattgaacca
     1861 tttgcttgct gtattagggg attaaataaa atttctataa aacatggaga taatgtcgca
     1921 attcttggcg ccggaccaac tggtgtaatg cattcattgt tggccaggct gtggggtgca
     1981 aacaacatag tgatttctga cattaacgaa ttcagactga agtttgttga aaaatatggt
     2041 gttatcacag tgaacttgaa tctagaaaag ctggatgatg tcattaataa taatacagaa
     2101 agtttgggag tcgatatcac aattttggca actggtagca tgaaggcatt tgaaagttca
     2161 ctcagaataa cacgaagagg aggaaagata ctgctttttg gtgttccttc tgttggctca
     2221 aagttcgacc tagacctaaa ctccctctac tccaaagaac agataatcat accaagctac
     2281 ggtgcttcag agatagaaac caaccaggca ctatcattaa tgtcagacaa atcaattgat
     2341 cttttgcctc ttgtaactca tcgttttcaa cttagagaat cagacaatgc tttcaaatgt
     2401 gctcacgaag cagtagatgc catgaaagta ctggtagtaa catcttagtt ctattgatga
     2461 aaacataaat aacttgtata atcagcttat ctaccatgga ctggggatta aaaaatcgct
     2521 tatcaaggat aattaaccaa caagacggta aaggggtcat gttagcagta gatcatggat
     2581 attttctagg tcctacagaa agattagaag atccggaaaa gaccattaaa ccactgttaa
     2641 aatatgctga ctctttaatg ctcaccagag gagttttaag gaccagtgta gctcctgaat
     2701 ccaatattcc tatagttcta cgtgtttctg gaggtactag tattctaggc gaagatcttt
     2761 caaaggagac tataacaaca tcgattgaag aagcaataag actcaatgca gcatgtttgg
     2821 ctttgtcaat ttttgttgga ggtaaatacg aacaccaaac actaagcaat ctttccaaac
     2881 tagtagacga aggtgaaaaa tacgggattc cagtcttagc agttactgca gttggaaaag
     2941 aaatggccag agattcaaga taccttggac tgtcctgtag aattgctgca gaattaggtg
     3001 cgcacttggt aaagacctat tactgtgaaa aatttgaaga agtagtcgag ggatgtccag
     3061 tgccggtcat tattgccggg ggtaaaaagt taccagaaaa agatgcgcta aatctgactt
     3121 ttaatgcaat aagagatggg gcgtctggtg ttgacatggg cagaaatatt tggcaatcag
     3181 atcaccctat tgagatgatt caagcagtta gagcaatagt gcatgacgga ttatcagtag
     3241 aagagtcatt caattcattc tttttggaga agggattgag atctaataaa ttagaaacct
     3301 taaacacgcg ataaattttt ttagtagata taatttcatg ttttaacatg tcagaatatg
     3361 aggggggtac ttttagatgc aaggtatgcg caaaggaatt tctaacaaag aatgaatgtg
     3421 atgctcatta tgatgatatt catggagatg aagttgcaaa cattggtgaa taactgcctg
     3481 taaggcaaat cattaaagca aacgggatga aaataatgtt agatttttta gtgaccaaat
     3541 taatttaatg taagatctag ttgaaaactg caaatgtaat tttatttgaa attgggattt
     3601 gtgctcttga agattctaat ttaatttaca aaaggaaatt tgataatccc gtagttgagt
     3661 attcttcgat catacaaagt caagataatt acataattga tttgatttcc atgttaagaa
     3721 attatgatca ggtgcgagtt aataataaga atctaataga aatttttcaa cgggaaaatt
     3781 ttgacgttaa actaatgtcc gattctagcc aaaacgagat aaatctcaat aaattggatc
     3841 ttatcataaa atttggatta tcagataaca aagatgaatt agctgcaatt ctgcaaaaat
     3901 ttgcaataaa tctttcatct atgaaagtga aggagatatc tgagaaatta gatcttcatt
     3961 tggttcaggc ggtcaataca ttagatgagc tggatgaaat aataaataca attagtacaa
     4021 ggattcgtga gtggtatgga ctccattttc cagaattgga ttatttactt caaaatatca
     4081 ttacctattc caatatcgta agagatgcag gatcaaggga aaatattagc aaagaactct
     4141 taactcaact tgaggtacct gaaaagaaaa ttgagatgat tcaactagca atatcaaaaa
     4201 gtcagggagg agaccttact gttgaaagct ccgaatcgct aaaaattttg gcatcccaag
     4261 taataaagtt atcagaattg agaacgaatc tttctaacac aatagaaaac ctgatggaga
     4321 aacttgcacc aaatttgaag aacatcctta ctgcgacaat aggtgccaga ttaattgcga
     4381 aagcaggtag ccttattaga ttagcacaga tgccttcaag tacaattcaa attattggag
     4441 cagaaaaagc cttgtttcgt gcactaaaaa cagggaccag acctccaaaa catggtctat
     4501 tatttcagca tccttcagtt aactctgctc ccaaatggca gaggggtaaa attgctcgtg
     4561 ctctgtcttc aaaaatagct attgcagtaa ggatagatgt ataccgcaat gcctcgctgg
     4621 ataattcatt attagataaa ttgacaaaga gaattgaaac tattcaaaag atttatcatg
     4681 agcctccgaa agggaaggaa tcttttgaag ataggggcag attcatgaac agaagaccaa
     4741 acagatcgat gaaattcaag agaaggaaga cgcgtcatga aaaacgtaga cgccattagt
     4801 tacgttactg taaatggaaa ggagcatata gcaacaataa acctattgaa gggggtaact
     4861 ctttatgggg aaaagcttat ctccagaaac ggaaatgaat acagaacatg ggatccattt
     4921 agaagtaaat tagcagccgc atatatcaag ggacttcatt ttgacttttc taatgttggc
     4981 aacgtattat atctaggagc atctacagga actactgtaa gtcacttgtc cgacatagtt
     5041 ggtcactctg gcaaaatttt tgctgtagag tcttcaacaa gagttgcaag agagttgatt
     5101 tcaaatgttt cctccaagag aacaaatgta atacctataa tagaagatgc aaggaagccc
     5161 aggagctatt tttctatata tgataaaatg gatctcgttt attgcgatat cgcccaaccc
     5221 gatcaaacaa ctattgcgat tgataactgt aaaatatatc ttaaagaagc aaagccaatg
     5281 ctccttgtta ttaagactag aagtattgac gttacaatgt cgccaaagaa tgtaatatcc
     5341 caagaaatta aaaaattaga aagcaattca tttgaaatca aacagaaaat agatcttgaa
     5401 ccttttgaca aggatcacgc aatgataaac acagtttttt atccaaaata gtggatacta
     5461 atgactagtg cctgacacga tcagttgagc aggtttccaa gattttcttg caattggagg
     5521 aatttcatta ttttgtctaa accattcttt tacaaacttt atcgttttct tgtcagacgg
     5581 ataaccactt ccaatatcgc cgtatttagt gcgaattttg cttatctcag aatcacgtat
     5641 aacctttgca ataatagaag cgccagaaac tgccacattc aatctgtccg cgtgatgcat
     5701 tgaaatcaat ttcgtattat ttcgtttaag aaaactactg atagttctct gatatctgga
     5761 aggattcacg tcacatgaat caacgtatgt cttgtcagat ttcatatttc caatcgtaat
     5821 ggccattgcc tcagcttcga gaaggtttag attgtttcta aaaacatgga aatcaatatc
     5881 ttcaatgctt attctacaaa tacaaattga ttctgcaatg ttaacgatat gaccaaaaag
     5941 agtttgtctt ttcttgggag taagcaattt tgaatcttta atttcgcact taatcagttc
     6001 tgatatggat tttttggtta cgcagattcc ggccacgatg atggggccta gcaaagatcc
     6061 tctaccggct tcatctactc cacaaattat gctcttattg cccgcgaact ctgatccctt
     6121 gagtccaaat caagatattg ttggtatttt atccttgccc cggcaatcat gatatattag
     6181 tagccaaaag ttatcttaca acctaccagg attgcaatat gatgtttcaa ggatcaaaga
     6241 aggtaaaaca attcttctag ttccaagttc atcacttact gagatcgtac caccaaaaaa
     6301 tcctgctttt ttcaatccga atgcaaagtg gaacagagat atttctatgc tagtctacaa
     6361 gatacaagct tcttcaaaat acaatctaac ccttgctgac tctatttgcg gtgtaggagc
     6421 aagaggatta agagcttcag tggaagttcc gaaaatagat acaatttatt tcaatgatct
     6481 aaatcccatt gctatagaac ttgctaaaga gagcgcaaaa ttgaaccagg tagggagcaa
     6541 atgtctgttt ggtactaatg atgtttgcaa attcttaaat tttgaagagc gtgaatcccg
     6601 gaaatttgac atcgtagatc tagacccgtt tggaagtcca tcgccttatg tggattgtgt
     6661 tttgcgttca gtaagcaatc atggattgat atcaattaca gcaacagaca ctgcagtatt
     6721 atgtggagtg tatccaaatg tatgctatcg aaaatattat ggattcccaa taaggactga
     6781 atattccaat gaaatcggta taaggatctt gctctctttt atagcactaa atgcatccag
     6841 attcgattta tctattattc catatttttg ccatactaat cttcactaca tgagagtata
     6901 tctgagggta atatttggaa gttcactttc aaactctgtt tcctcgaaaa taggatttct
     6961 taaacattgt cagaattgta aaaatagaat tattgaaaat cttaaagagc aaaacttggt
     7021 ttgtgaaata tgtggtcaaa aatgtaattt ggcaggaccg ctctggatag atcctcttta
     7081 tgattctgaa tttgtggacg caatgttaac cgaattggaa aagggcggag aaaactcaat
     7141 gccggtcaat gatcataaca gattgcttaa attgatgcaa acctgcagta gtgaactatc
     7201 atttcctttt tattttgaaa cagatagaat tgcatccatg gcaaaaaaga gctcaatttc
     7261 actggataaa gttatttgta ttctctcaag caatggattc aaagtatcca agacgattat
     7321 gaacgaaaag ggattcaaaa ccaatgcaac agcaaaggaa ataatgaatc tcctttacaa
     7381 ataaatagta atttatagaa atagcgtgat taagagactg tatggtgggc gtattcaaat
     7441 tgattagttt gacattagag gggcgaaaac gtgaaattac aagttaaaaa tttatctaaa
     7501 agattcaaaa catcaaattc gaataaagtt gaatacgtta cagcaattga aaatatcgac
     7561 ctcacgatta atgatggaga atttgtgtgc attactggac cttctggatg cggaaaatcc
     7621 actcttctta acattcttgc aggacttgat aaacctaccg aaggagaaat cattcttaac
     7681 ggtcatgaaa tcaacggaac aggaccagat agaattatgg ttttccaaga gaatgctttg
     7741 ttcccctggc tcaaagtaat agaaaatgtt gaatttggcc taaaaatagc tggtttacag
     7801 aaagaaaaga gacgtcagat agcatttgcg cacctagaaa ctatgcaact gacaaaattt
     7861 gcagattcgt acgtgtatca gctatccggt ggtatgaaac aaagagtggc tcttgcaaga
     7921 gcacttgtta tggacccaga aatattgctt atggatgaac catttgcctc ccttgattcc
     7981 caaacacgag atttactttc ggttgaattg caactaattt ggtcaaagac aagaaaaacc
     8041 atcatttttg taactcataa tataatggaa tctgtatgtc ttggtgatag agtatttgta
     8101 ttcaccaatc gaccaggaaa aatcaaaagg gaaattacta ttgatcatag aagaccaaga
     8161 cttactgagg atgacgaact caaaccctat tacagggaag tcttggacga attgaggaat
     8221 gaaattagtg ctgcacgcaa acaaaaatct gactaatttt cctttagttt cttaacaagg
     8281 tccagtccat cttcaaaact atttggagaa cacagaagca ctttatctgt caaattccct
     8341 gcctcacgaa taaaattttc tggttcctct tcataagaac cccagtccaa accaatgttc
     8401 ttggctgaca attcattcct cgttgatgga cacattatac agggtataac atcaatacta
     8461 tatggtgtcg acaaactaac aatctccttc aaattttcga tagaacttat cgactgtgtg
     8521 ataaaagcac gcggtcttgc tttaagttta ttcttaatat ttacattctc ttggaacttg
     8581 cttggaaatg ataaatccag ttttatgtat ttattaaaac tgagatctga gagagtttta
     8641 atagccttag tcggtgggac gtcgaagatc ttattaccaa taacagggtc atctccacga
     8701 agaattagga tgctgtagac tccacatctg atagcatctg tgacaaattg cagtaatgaa
     8761 ataagatttt tatcataaag tctgcacgta cagcttatcg gtttcgatat tcccatccgc
     8821 tttaacattg aaacaagcat caaacttgaa acccgaggga caccaagaac attatctgtc
     8881 aaatggattc catcaatata ttctgaaata cgttttgttc ttgacaaaaa aagatcaatt
     8941 tttttgttta ttgtatcaat atcaaaatgg ttattgtata gaacctttgg agggttcatt
     9001 tcataaataa cgttaatatc catcaatatc tcacaatatt aatcataatt aaatccttaa
     9061 tttataatct taaaatttct ttacggtcta tgtcttcaat aatttcgctt gatagatctt
//
LOCUS       DASUMD010000077         7359 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_238567, whole genome shotgun sequence.
ACCESSION   DASUMD010000077 DASUMD010000000
VERSION     DASUMD010000077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7359)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7359)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7359
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_238567"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(303..1190)
                     /locus_tag="VFX26_02015"
     CDS             complement(303..1190)
                     /locus_tag="VFX26_02015"
                     /inference="COORDINATES: protein motif:HMM:NF013324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005743 - mitochondrial inner membrane
                     [Evidence IEA];
                     GO_component: GO:0035632 - mitochondrial prohibitin
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prohibitin family protein"
                     /protein_id="HEX5573282.1"
                     /translation="MSYYKAPRFPSRFPSGNKIKIAAAVITVIIIIVILAESIVIVEA
                     GHRGVVLYLGAVENRVLGEGVHFITPFLEQVVQMEVRTQKFQAEATAASNDLQEVQTV
                     IALNYRIDPQEANKIYQILGVNYADRVISPTIQESVKASVAKFNAEELITKRETAKSV
                     IADAIRSTLSANDIQTQNVFITDFKFSDAFATQIEQKVVAFQKFLTEQNNLRAIEVVA
                     NQTVAQAEGQARANAARASGESEAINIITSKLRESPEYLQWQAITKWNGQLPYALGSS
                     GVPFFQLPFPDAQNQTQTQ"
     gene            complement(1266..2039)
                     /locus_tag="VFX26_02020"
     CDS             complement(1266..2039)
                     /locus_tag="VFX26_02020"
                     /inference="COORDINATES: protein motif:HMM:NF016300.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HEX5573283.1"
                     /translation="MTKQNPIRMSIIAIATTFTLYLLVHSYNVNEHTLYAQTSTLDNK
                     TLFVTGSATTVVEPDKVTVSLGVETTNTTAKAALAANSELMSKIINALKTAGVKENET
                     STSSFTITPNRNYSIDKDQGKLIGFTVSNSIQIDSSNVNDTSDWIDIAVSSGANNVNS
                     IYFSLSDKKLDEIKNELITNAIENAKEKADIAASALGHKVVGIRTASIDQVTPFFPGP
                     VPYATESLKNEAFAPSTTILTGEQQISLNVNIVFLMEKV"
     gene            2303..2683
                     /locus_tag="VFX26_02025"
     CDS             2303..2683
                     /locus_tag="VFX26_02025"
                     /inference="COORDINATES: protein motif:HMM:NF025263.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C2H2-type zinc finger protein"
                     /protein_id="HEX5573284.1"
                     /translation="MKWFGGHETDNKPKLSTCKYCNTKFEDKEKLKRHIRSAHNAKGD
                     TIFENFTNLELFHHTKFICEIDDLKFKTYEELILHMKQIHHHQILKCRECGKEFIHEK
                     DRLHHVREDHEKKIDYRKHKDSYK"
     gene            complement(2876..3853)
                     /locus_tag="VFX26_02030"
     CDS             complement(2876..3853)
                     /locus_tag="VFX26_02030"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008465 - glycerate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycerate dehydrogenase"
                     /protein_id="HEX5573285.1"
                     /translation="MDKFHKYTAYITRKIPEPGPSILKKYFEVKMNPGVDVLDREDLC
                     KNVRNVDALMCMLGDKIDSNVMDAAGSNLRVISCYSVGYDHVDIKEAQKRKIIVTNTP
                     NVLAKTTADLTFSLILSAARNIVNADSYVRNGNWKFGWTPDLFLGYDVHGSTLGIIGL
                     GEIGTLVAKRAKGFDMEVIYYSKTRKSRIESELGINYVPLEELLQRSDFVSIHVSLNK
                     DSFHMIDESKFKLMKKTAFIINTSRGKIINEHHLISALRNKVIAGAALDVYEIEPIFR
                     SNPLNQLSQTILLPHIGSATFITRSKMSEIAVNNIVNFFNSKGIVYKVN"
     gene            complement(3924..4865)
                     /locus_tag="VFX26_02035"
     CDS             complement(3924..4865)
                     /locus_tag="VFX26_02035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenic resistance protein"
                     /protein_id="HEX5573286.1"
                     /translation="MTSYDTKVLLALSISILFSTIFGIIFPSIGELFSPYVLVILGLL
                     LFLNLIQLELQDLISTFKKPKLLTVLSIMKVIIIPVTMYFVTNLISPKYALSVLLLSG
                     ISTGLGAPFVSNYVGGKLSIVVGMVIVTSLVVPFILPTLVYILYNTEFSIPIFDMILL
                     LVISLVFPLVASGFIKKYLPKLATSINKNSLPLSIIFMDLINFAIFSKFSSYFYFESS
                     FVIFTTVIAILLFSIFAVAGYLVLYIINKNSSSLKYKISGLIAMSYVNNILVTVFAQQ
                     FFGSQVAALAAFYNIPYYFGIILLKILFSKKVMRSSS"
     gene            5011..5505
                     /locus_tag="VFX26_02040"
     CDS             5011..5505
                     /locus_tag="VFX26_02040"
                     /inference="COORDINATES: protein motif:HMM:NF013494.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4a-hydroxytetrahydrobiopterin dehydratase"
                     /protein_id="HEX5573287.1"
                     /translation="MIKWVIVMINILLLIIVTLGYTTVMGQTEETISKNNATVTSING
                     SYIKDALASVHNDTIPHYLKLSENEINEALKDLPGWIILDDKLHKTFTFADFSTLFEF
                     MYQVADASQKLNHHPNMTSTWNTLTLDYDTWSLGHVISNVDVKAAGIIEKLYQEGKYA
                     EIGS"
     gene            5882..6130
                     /locus_tag="VFX26_02045"
     CDS             5882..6130
                     /locus_tag="VFX26_02045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573288.1"
                     /translation="MNVPKLEQIRAKTVRAIDSNDKGTVCSIEYLNQPFFNNLRDSII
                     AQIELCEQLFIKTTGTYERNAIERETLILKLILDLLDY"
     gene            6170..6547
                     /locus_tag="VFX26_02050"
     CDS             6170..6547
                     /locus_tag="VFX26_02050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573289.1"
                     /translation="MTANYSLIDKESETSEIKKLILDLKNKRYAFGIIPEKIIHMNNG
                     IKYYNAEAECNDSKIIISAYDIQAEELFKEVHEHEFLKNNISQCLRNLACSLSVVGPI
                     SQYSPNKSTKYTRNDMIKFMRVP"
     gene            6544..7056
                     /locus_tag="VFX26_02055"
     CDS             6544..7056
                     /locus_tag="VFX26_02055"
                     /inference="COORDINATES: protein motif:HMM:NF012521.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEX5573290.1"
                     /translation="MKKDTKTLLILRHAKSSWEFAELSDHDRPLNNRGKRDAPRIGRK
                     LLKEGLIPQLIISSSAVRAYSTAEKVAKACGYDGEITVDSSLYASGYTEYLNVLQIQN
                     DQYDIIMLVGHNPHSEQLLEILTGKMITLQTCTVAYVRLHIRAWKEVKAQTKGELVNI
                     WRPKELDLHE"
BASE COUNT         2494 a         1159 c         1250 g         2456 t
ORIGIN      
        1 gtgaggctga agatttctac ctctcttttg cattgttaga accagcaatg aaggatctat
       61 atcttaaact tagggaatca tacgaaaatt taaaatcatt gaatatcact tagttggcta
      121 aatgttatca attgaaaatc acttagttgg ctaaatgttc ttgtcataag gattaaagta
      181 aactcaaaag atcaaaataa aaaaagaaag gtacggtacg gtcattcgct cgttacttat
      241 ctttgaccta tgttgtgtta gagcggtgtt ttcaaaaata tgatattgga aaaaaatttg
      301 aattattgtg tttgtgtttg attttgtgcg tcggggaaag gtagttgaaa gaagggaaca
      361 ccactggatc caagcgcata tggcagttgc ccattccatt ttgtaatggc ctgccattga
      421 aggtattctg gactttctct taattttgaa gtgataatgt ttattgcctc agattcacca
      481 cttgccctgg cagcatttgc tcttgcttgc ccttcagcct gagctacggt ttgatttgca
      541 accacctcaa tagccctaag attattttgt tcagtaagga atttttgaaa tgctactact
      601 ttttgttcta tctgcgtcgc aaaagcatct gaaaatttaa agtcagtgat gaaaacattt
      661 tgtgtttgaa tatcatttgc agaaagcgta cttctaatgg catcagcaat aacactttta
      721 gccgtttctc tctttgtgat taattcttca gcattaaatt tggctacact ggctttgacc
      781 gattcttgaa tagttggaga tattacacgg tctgcatagt taacacccaa tatctggtat
      841 atcttgtttg cttcctgtgg atcaattctg tagtttaatg cgataacagt ctgtacttct
      901 tgtaaatcgt ttgaagctgc agttgcctct gcctggaatt tttgtgttct tacctccatt
      961 tgaacgacct gctctagaaa aggcgtaatg aaatgtacac cttctcctaa taccctattt
     1021 tcaactgccc caaggtaaag gacaactcca cgatgacctg cttcaacaat tactattgat
     1081 tcagccagta ttactataat tatgattact gtaataactg ccgcagcgat tttaatttta
     1141 ttaccactgg gaaaacgtga gggaaaacgt ggtgctttat agtatgacat ccttgattaa
     1201 gttaaaagtt gtagagtatt gtatatatgt ttaggctcaa ttccgacctt cctttcttgt
     1261 ttttatcaaa ccttttccat gagaaaaaca atattaacgt tcaaagatat ttgttgctct
     1321 cccgtcaata ttgtagttga tggtgcaaac gcttcatttt tgagtgattc agtggcataa
     1381 ggtactggtc cgggaaagaa tggtgttact tgatcaatac ttgctgtcct tattcctact
     1441 actttgtgtc ccagtgctga agcagcaata tctgcctttt cttttgcatt ttcgatagca
     1501 tttgttatca attcgttctt aatttcatca agttttttat ctgacagact aaaatagatg
     1561 ctatttacat tattggcacc agatgaaact gcaatatcaa tccaatccga tgtgtcattt
     1621 acgttgctgc tgtctatctg tatagaattg ctaacggtaa atccaattaa tttgccttgg
     1681 tctttatcta tagaataatt tcgatttgga gtgatagtga atgatgatgt actggtttca
     1741 ttctctttaa cacctgctgt ttttagagca ttgatgattt tgctcatcaa ttcagaattt
     1801 gcggctaatg ctgcttttgc cgtagtattg gttgtttcca cacctaatga tactgtaact
     1861 ttatcaggtt ctaccacagt tgtggcagaa cctgtaacaa acaatgtttt gttatcaagc
     1921 gtggaagttt gagcatacaa agtgtgctca ttgacattgt atgagtgaac caacaaatat
     1981 aatgtgaatg tggtagcaat tgcgattatt gacatcctta taggattttg ttttgtcata
     2041 attgaaagtt aaggatgaac tgctataaaa aattagaagt attgtatgga gttttggaac
     2101 ctaaaagatt ccagagtgat acaattaaat ttaaatattt ttcaaatttg taaagataaa
     2161 agatatcaaa tagtattatt gtggttcatg tatacttatt aatataataa aggaatccac
     2221 attattttta taattcaaaa cggttgtgtc cttgtaagac agttagcgta agtttaatga
     2281 aggattacct tgtaaattat ttatgaaatg gttcggaggc catgaaactg ataataagcc
     2341 taaactttcg acctgtaaat attgtaacac gaaattcgag gacaaggaaa aattaaagag
     2401 acatataaga agtgcacaca atgcaaaggg tgatacaata ttcgaaaatt ttaccaatct
     2461 ggaattattt catcatacaa aatttatctg cgaaatcgat gacttgaaat tcaagacata
     2521 tgaggaattg attcttcaca tgaaacaaat tcaccatcat caaattttaa aatgtcgtga
     2581 atgtggcaag gaatttattc atgaaaaaga cagacttcat catgttagag aagatcatga
     2641 aaagaaaata gattatagaa aacacaagga ttcttacaaa taaagacatt ctcttctatg
     2701 tatttagaaa tacctttaat tttcattgta taacaatatg gtaataaaat tattatttat
     2761 gttcctatca atgtaaagta gaatttagtt cgatctaatt aatttactta caacttgatt
     2821 tatatctaca atacaatttt caatattgtt aatgtttcat tatccatgtt taaatttaat
     2881 ttaccttata aacaattcct ttgctattaa aaaagtttac aatattgttt actgcaattt
     2941 ctgacatctt agatcgtgtt ataaatgtag cacttccaat atgtggtaac aatatagttt
     3001 gtgacaattg atttaatgga ttggatctga aaataggttc aatttcatac acatctaaag
     3061 cagcacccgc tataacttta tttcttaggg cgctaatcaa atggtgttcg tttatgattt
     3121 tacctctcga agtatttatt ataaaagcag tttttttcat taatttaaat ttggattcat
     3181 ctatcatatg aaaactatcc ttgtttagcg atacatgaat agaaacaaaa tcactacgtt
     3241 gtagtaattc ctctagtggg acataattta tacccagctc tgattctatt ctacttttgc
     3301 gagttttact atagtaaatt acttccatat caaatccttt tgcacgtttt gctacaagtg
     3361 tcccaatttc tccaagacca attattccta aagtacttcc atgtacatcg tacccaagaa
     3421 agagatcggg cgtccatcca aatttccaat ttccatttcg cacataactg tctgcattga
     3481 caatatttct ggccgcactt agaattaacg aaaaagtaag atctgccgtg gtcttagcta
     3541 aaacatttgg tgtatttgta actattatct ttcttttttg tgcctcttta atatctacat
     3601 gatcatatcc tacactatag cagcttatta ctctaagatt tgatcccgct gcatccatga
     3661 catttgagtc gattttatca cctaacatgc acattaatgc atccacattt ctaacatttt
     3721 tacataaatc ttccctgtca agtacgtcca ctccaggatt cattttcact tcaaagtatt
     3781 tttttaatat tgatggtcct ggttctggta tttttcttgt tatatacgcc gtatatttgt
     3841 gaaatttatc cataaaataa ttgatttttc tagtttgggt tattaatatg atatggattt
     3901 ggatttattt cgaatttcgt tactcaacta ctacttctca ttaccttttt tgaaaataat
     3961 atctttaaca aaataattcc aaagtaatat ggtatattat agaatgctgc aagtgcagct
     4021 acttgtgaac caaagaattg ttgcgcaaaa acagttacta ggatattgtt tacataactc
     4081 atggcaataa gccctgaaat tttgtatttt aatgatgatg aatttttatt aatgatatac
     4141 aaaacgagat aacctgctac cgcaaatata gaaaataata aaatggcgat tacagttgta
     4201 aaaataacaa aagacgattc aaaataaaaa tagcttgaaa attttgaaaa tattgcaaag
     4261 tttatcaaat ccataaagat aatggacaat ggtaaagaat tcttgtttat acttgttgct
     4321 aatttgggta aatatttttt tataaatcca ctcgcgacga gaggaaaaac tagagatatt
     4381 actagtaata aaatcatatc aaatattgga atcgaaaatt cggtattata aagaatatag
     4441 actaatgtag gcaatatgaa gggaaccaca agagaagtga ctattaccat tcctactaca
     4501 atagaaagtt ttcctcccac ataattggaa acaaatgggg ctccaagtcc cgtagagatc
     4561 ccggataata gtagtactga cagtgcatat tttgggctaa tcagattagt aacaaaatac
     4621 attgttactg gtatgataat cactttcata atggataata ccgttagcag tttaggtttc
     4681 ttaaaggtcg atatgaggtc ttggagttca agttggatca aatttagaaa taacaataat
     4741 ccaagaatta ccaacacgta tggagaaaag agctctccta tagaagggaa tatgatacca
     4801 aatatagttg agaaaagaat cgaaattgag agtgctagga ggactttagt atcataagag
     4861 gtcaactata ctgatcaact agtacattac cacaaatatt tatcaattga ttatgaaaaa
     4921 tcaggaagaa aatgaaatac ctaaatcaac atataattaa ctagcaagat atcatgaaat
     4981 aataaatatc acactatgtt gataaatatc atgataaagt gggttatagt aatgataaat
     5041 attttgttac taattatagt gacactaggt tatacaacag tgatgggaca aactgaagaa
     5101 actatatcta aaaataatgc aacggttacc tccattaatg gttcatacat taaagatgct
     5161 cttgcttcag tgcataatga tacaattccc cactatctca aactctcaga aaacgagata
     5221 aatgaggcat taaaggatct acctggttgg atcatacttg atgataagtt gcacaagacc
     5281 tttacatttg ctgatttttc tactttattt gaattcatgt accaagtggc cgacgcttcc
     5341 caaaaattaa atcatcatcc aaacatgaca tcaacatgga atacattgac attggattac
     5401 gatacgtgga gtttaggaca tgtaatttcc aatgttgatg tgaaggcagc tggcattata
     5461 gaaaagttat atcaagaagg aaaatatgca gaaattggta gttgaatgat atggtgtggt
     5521 aaagtacagc agacagaact gcaaatactc gtgtcaaata tagatttatt tttgccgttt
     5581 catatgtaaa atactttcat atagtctatt tggatctaca agattacctt cgtcaattct
     5641 aatatgagca gacttgtgtc ttctagggta tgtttaataa agaatcttgc aggggatgtg
     5701 gtttttgttt gactcccttc gctacctgta atatttgcca agaatatgtt tcatggattt
     5761 gttgtaaatg cgatagaatg gaggattgta ctcatagtca taattattgc agaatttcat
     5821 tgagaaaaaa aatagaacca ggtttattga atttactctt atatgaggta ataattaaaa
     5881 aatgaacgta ccaaaactcg aacaaataag agcaaagacg gtaagggcca ttgacagtaa
     5941 cgataaagga actgtctgtt caattgagta tttaaatcaa ccttttttca ataacttacg
     6001 tgattcgata atagcacaaa tagagttgtg tgaacagttg ttcataaaga caacaggaac
     6061 ttatgaaaga aatgctatag agagggaaac attaattttg aaattaattc ttgacctgct
     6121 agattattga tgaaaatgct ggctgaaata acgtaacaca agatttagtt tgacagctaa
     6181 ttatagcttg atcgataaag agtctgaaac aagtgagatt aagaaattaa ttcttgattt
     6241 aaaaaataag cgatacgcat ttggtatcat tcctgaaaaa ataatacata tgaataatgg
     6301 aataaaatat tataatgcag aagctgaatg caatgatagt aaaattatca taagcgctta
     6361 tgatatacaa gctgaagaat tattcaaaga agtccatgaa catgaatttt tgaaaaataa
     6421 tatatcacaa tgtttaagga atcttgcttg ttcattatca gttgttggtc caatatcaca
     6481 gtactctcca aacaaatcca caaagtatac aaggaatgat atgattaaat ttatgagagt
     6541 cccttgaaga aggatacaaa gacattattg atacttcggc acgccaaatc aagctgggaa
     6601 tttgcggaat tgtcagatca tgatagacca ctaaacaacc gaggtaaacg tgatgcacca
     6661 cgaattggta gaaagttgtt gaaagaaggc cttatcccac aattaataat aagctcttca
     6721 gcggtaagag cctactccac tgcagagaag gtagccaaag cctgtggtta tgatggagag
     6781 attacagtcg actcttcgtt gtatgcatca ggatatacag aatatctgaa tgtattgcaa
     6841 attcaaaatg atcaatatga cattataatg ctagttggac acaacccaca ctcagaacaa
     6901 ttattggaga tattaacagg aaagatgatt acactgcaaa catgtaccgt agcatatgta
     6961 aggctacaca ttagagcgtg gaaggaagta aaagctcaaa ctaagggtga actggtcaat
     7021 atatggcgtc cgaaggaatt agatcttcat gaataatatc gatatagata ttcagtaagc
     7081 aaagatttac tagtgttcct atatgttgaa acattgatgg cttttagtat caaatgaaat
     7141 aaaccatttg ttgatcagat ttctaatcaa aaaaagcagg aattgagtct attgaaaata
     7201 acctaaaacc tcctttccct gctaactctt ctttttagtc tgtatcaaat cgagtacagt
     7261 cgtaaggtct tttccaattc tagccatttg cgcctgtatc tgtgatattt cagattccat
     7321 ccgtttgata gacttggaaa tcttttttgc tttcttaaa
//
LOCUS       DASUMD010000078         5768 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_349125, whole genome shotgun sequence.
ACCESSION   DASUMD010000078 DASUMD010000000
VERSION     DASUMD010000078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5768)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5768)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5768
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_349125"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..614)
                     /locus_tag="VFX26_02060"
     CDS             complement(<1..614)
                     /locus_tag="VFX26_02060"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HEX5573291.1"
                     /translation="MNSNGKNMIPVKERALVFQGGGSLGAYEAGAYKALYEFLSKYDE
                     TEGKGKRSTFDIIAGTSIGAMNAAVLTSYVAENGTYEGSAKKLIDFWKYMSANSIIDT
                     NPWFRPWWDYFQNINRLAGSSEAIRRYYSAKEFAIFGVPNVFSPIAPIFDYKFFDLYN
                     TWFRFSNEPLKRTLEKFAKFPIATNHEKSQPRLLLLSVDVADGLP"
     gene            complement(1157..1543)
                     /locus_tag="VFX26_02065"
     CDS             complement(1157..1543)
                     /locus_tag="VFX26_02065"
                     /inference="COORDINATES: protein motif:HMM:NF019401.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1622 domain-containing protein"
                     /protein_id="HEX5573292.1"
                     /translation="MSNNKMVLILDYYLTLITIVIDVAVGLVIGISAILAFASFLKHL
                     TMKKEGLTTYWVTIRARLARGLLLALDFAIGSDILKTILVPTFTELIILAVVVGIRII
                     LSWSLSKEIEGRRDDVAKTKGLPDAR"
     gene            complement(1942..3447)
                     /locus_tag="VFX26_02070"
     CDS             complement(1942..3447)
                     /locus_tag="VFX26_02070"
                     /inference="COORDINATES: protein motif:HMM:NF018332.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX5573293.1"
                     /translation="MSESTVNDGSGNPAGKQVTVKTPKVATRALWIMGISIIVVLYVH
                     TSLAPALVQMAEDFDKDLGTVSWVLTVYLISGAAVTIVIGRLADTYGPKKMLLLVFVC
                     YTVGTILAGFATEFYTLLIFRIIQGVAVALVPVAVRIARDLFPPEKFPFAQGVLLSMY
                     QGGSAIGLVVGAAVVYVAGWQGVFFSAIPISLILLFLLWKFIPKIQESKDKNASDSAS
                     KRHGKVIDIPGVITMVLTTSTFMLCFTFLGKGSEGVALFWTFLGVGVASMVAFFLIEK
                     RSENPLINLKLAFHKIIRVGNISYLMLGVVQYIIFSTIPTLGQTPEPYGLGMNTLQVG
                     LLQLPQALVFVALGPIAGILAVRYGSSKFIIPGSIIMCIGIVALLAFHSTSGQVASML
                     ILFAIGGAFVTLSANIIIWFTPPESTGVVSATYSTMRIIGGAIGPIIAGMFMALFTSE
                     VQSPEGVTSSVPNAMAFNATFLVGAIISLSLVAFMVIMKRRALKMGMPANK"
     gene            complement(3549..>5768)
                     /locus_tag="VFX26_02075"
     CDS             complement(3549..>5768)
                     /locus_tag="VFX26_02075"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase family glycosylhydrolase"
                     /protein_id="HEX5573294.1"
                     /translation="AGTAGAYIWLFLAGIGLILLGAERLVSGIFAKGVKRSTRLINIG
                     VGVGLIIYIGSGFFFPEFATKWLVIFLGFGLLANGIIRIVGGLKKKEKEESYDISSVA
                     LGVLITSLAILVLAYPPLGIALLVVMTIIALAISGIQIILAGLRGRRKGRQGIVTLTK
                     ASVDEQEPSAEDRKGIWKSGSWFRDQENRYLLFRGVNFGSRSKMPPYLPIAPLEVHEL
                     SKLDLNKEIESVRSGLDLMKNLGFNIIRLLVSWKAIEPRPNANLDELLPEGKKYLEYM
                     KEIIDELYARNLYVILDFHQDIANEVYGGDGFPDWAVAINEDHEKPKAPTKPDKKWQF
                     KYMISKSLKETLKSFWENDLTNLDEGLKNYPVRTHLEKTIGQTVKFFKSLNGGLGHPA
                     ILAVEPFNEPHPNTIPKKEFEVKNLMDYYRNVNSEIEKFDKALFIFIEPRVDWIMPTD
                     TGGMPAKYGASPLEVKSTFGMDFIKNVMVDKKLVTKRLETYLPSDLSSISRFGKNGVL
                     SFHYYDTMAVASSFVKIPESLYTYKIEFPMLFAQLYQAATERGLIPFITEFGAFQEAE
                     QVREYLDLQYKQIEALLLNATIWNYDLYNTEEGKDNWNYENYSLLGPGRKPRNVDAVA
                     RPYPMRSSAEPTLIFFDIDSKYAAIILKGKVVTEEPTVVYIPYDIHYSPEFTVWSTSN
                     ELKWDKMNNLLYWYPSKDHDYNQLVIGKGKLDKLDTEFLPEQSKELASKTIFSSTFE"
BASE COUNT         1709 a         1252 c         1033 g         1774 t
ORIGIN      
        1 ggcaaaccat cagctacgtc aaccgataac agtaatagcc ttggttgact tttctcatgg
       61 ttagttgcta taggaaattt agcaaatttt tccaaggttc tctttaaggg ctcattgcta
      121 aatcgaaacc aagtgttata caaatcaaaa aacttgtagt cgaatattgg tgcaatggga
      181 gaaaatacat ttggcactcc gaatatagca aattcctttg ctgagtagta acgcctgatt
      241 gcttctgatg atccagcgag cctattaata ttctgaaagt aatcccacca gggcctaaac
      301 cacggattag tgtctattat cgagttcgca gacatatatt tccagaaatc aataagtttt
      361 ttcgctgaac cttcgtacgt tccattttct gcaacgtagc ttgtcaggac agcagcgttc
      421 atagcaccta tcgatgtacc agcgataata tcaaaggttg atcttttccc ttttccctct
      481 gtttcatcat acttagaaag aaattcataa agtgccttgt acgcccctgc ttcataggca
      541 cctagagatc ctcctccctg aaaaaccaag gccctctctt taaccggtat catgttttta
      601 ccattgctat tcaaaagtat tttccacttc ttgtagtaac accttacgcc ggttaaatag
      661 gttcccgtac atccggcaat acgacgagta ctcgaagtat ttcgtacatc ttctttgtta
      721 gactataata taaaaaagac tgtaaataca aagatagagt ttacagtctt gctgtttgaa
      781 ctctccttta attgttgtaa ctttttccac caagcctgtg atacttcctt ctcccctcaa
      841 gttcactaag ttttgtgtca ttgacagcta ttcctgagtg ttgtgccaat tcagcaaact
      901 tctgcttatg ggcaagaaaa ttttcattgt ttactatttt ttattcattc ctgaaaacta
      961 aacaaaaact cctgcctgaa gggtaaggta agcatttgat tcttttataa gagtcaattt
     1021 tcagttgcta tacattttag ttgtagtaac aaatgatgtt ttgtgacaca gtcataagag
     1081 actttgctgt atcctgaaac gatatctaat gttgatccaa caaatcttat ttcaacttta
     1141 aatattttgt ttcatgttat cttgcatctg gtaacccttt tgttttggcc acatcatctc
     1201 tacgcccttc aatttctttt gaaagtgacc agctaagaat aatacgtatt ccaacaacta
     1261 ctgcaagtat tatcagctca gtgaaggtgg gaacgaggat cgtcttcaat atgtcactac
     1321 ctattgcaaa atcgagtgct agcagcaatc ctctggctaa tcgcgctctt atcgttaccc
     1381 agtatgttgt taggccttct tttttcatcg tcaagtgctt taaaaaagaa gcaaaggcta
     1441 agattgcgga tatccctatt acaagtccga ctgctacgtc aattacaatc gtgattaagg
     1501 ttaagtaata atctaagatc aataccatct tattattgct catatacgga cttacttcta
     1561 aatgtttgag cgaagcatcg taaatgcgaa tacatattca gaatttcagg ttacctagga
     1621 accatttcag gacatcgtcc aaacgctgca aaaacaacag gacttgcaga ggtagcacca
     1681 ttccgccaat aaattttgtg ttgaataata aggctacctt agcatttaac acttattcgg
     1741 agacgagacg atatatgata atgtgtgtat catagattcc tcgttggcag tttagagaaa
     1801 tacgaaagag aagtacttgt ccaaatagac gattttttta gttgccttct aattacggtc
     1861 catgttaatc gacgcctttc atgctactcc tttccccaac cttagaacgt tactgatgaa
     1921 tgtagctggc tctttgctca attatttgtt tgctggcatt cccattttca acgcccttcg
     1981 tttcataata accatgaatg ccactaagct tagagaaata atagctccaa ctagaaatgt
     2041 tgcattaaac gccatggcat ttggtacaga agatgtcaca ccttcagggc tttgtacttc
     2101 tgaagtaaat aatgccatga acatccctgc aataataggt ccgattgcac ctcctattat
     2161 tcgcatagtt gagtaagtag cagatacaac accagtagat tccggcggcg tgaaccagat
     2221 aatgatgttt gctgataaag tgacaaaggc tccaccgata gcaaataaga tgagcatgct
     2281 ggctacctga cctgaagtcg agtgaaacgc caggagggca acaataccta tacacattat
     2341 aattgagccg ggtattatga acttggagct gccatatctg acggccagaa tcccggctat
     2401 cggtcctaga gccacgaaca ccagggcttg tggaagctgt aacagcccga cttgaagcgt
     2461 attcattccc aaaccataag gttccggggt ctgacccaga gtaggaatcg tggaaaaaat
     2521 gatgtactgg acaacaccaa gcataagata actaatgttt ccaactctga tgatcttgtg
     2581 aaacgctagc ttcaaattta tcaatggatt ctcgcttcgt ttttctatta aaaagaaagc
     2641 taccattgag gccacaccta ctcctaggaa agtccaaaag agtgcaacac cctcactacc
     2701 tttccctaga aaagtgaaac acagcataaa tgtactggtt gtcagcacca tggtaataac
     2761 tcccggaata tcaatgactt taccatgtcg tttggacgca ctatcactag cgtttttatc
     2821 tttactctcc tggattttgg gaataaactt ccaaagcaag aataggagta tgagtgaaat
     2881 tggtatagcc gaaaagaaga cgccctgcca accagctaca taaacaacgg cagctcccac
     2941 taccaaacct atcgcactac ctccttgata catggacaat aaaacaccct gggcaaaagg
     3001 aaacttctca ggtggaaaca gatctcgtgc aatacgaaca gcgacgggga ccagagctac
     3061 tgcaacacct tggatgatcc tgaatattaa tagagtataa aattctgtag caaagccggc
     3121 tagtatcgtt cctacagtgt aacacacgaa tactaagagt agcatcttct tcggtccata
     3181 tgtgtcagca agtcttccta taactatggt taccgcggca cctgaaatta ggtaaactgt
     3241 aagtacccaa ctaacagtac ccaaatcctt atcaaaatct tcagccattt ggacaagcgc
     3301 aggagctaaa gaagtatgga cgtataagac tacaattatg ctaatcccca taatccagag
     3361 ggcccttgta gctaccttgg gtgtttttac ggtaacttgt tttcctgcag gattaccact
     3421 accgtcattt acagtagatt cagacaatct ttgcctattt tactattatt cctatataag
     3481 ctctcttatt tcagtgagca gtatgataag ttaagaaaat ctaaatgacg ctctaaatct
     3541 taatcagctt attcaaaagt actgctaaat atagtcttgc tagctaactc ttttgattgt
     3601 tcaggtaaaa attcagtatc cagcttgtca agtttaccct ttccaattac taactgatta
     3661 tagtcatgat cttttgaagg ataccaatat aaaagattgt tcatcttgtc ccatttcaat
     3721 tcgttactgg tagaccatac tgtaaattca ggggaataat gtatgtcata aggaatgtag
     3781 acgaccgtcg gttcttccgt cacgacttta cccttaagaa taatcgcagc atactttgaa
     3841 tcaatatcaa aaaatatgag agtaggttct gcggaacttc gcatgggata tgggcgtgcg
     3901 actgcatcca catttcgtgg ttttctgcca ggtccaagaa gtgaatagtt ttcataattc
     3961 caattatcct tgccttcttc tgtattgtat agatcgtagt tccatatagt agcattaaga
     4021 aggagtgctt ctatttgttt atattgtaga tccaaatatt ctcttacctg ctctgcctct
     4081 tggaatgcac caaattctgt tataaacggg attagtccac gttcagtagc agcctgatat
     4141 aattgggcaa atagcatggg aaattcaatt ttataggtgt aaaggctttc aggtattttt
     4201 acaaatgagc tggcaactgc catagtatca tagtagtgaa atgacagaac accgtttttt
     4261 ccaaatctgg aaatggagct taggtcactt ggcagatagg tttccaatct cttagttact
     4321 agtttcttat caaccattac attttttata aagtccatac caaatgtgct ctttacctca
     4381 agtggggatg ctccatattt ggcgggcata ccgccagtat cggtaggcat aatccaatca
     4441 actcttggtt caataaatat aaacagggct ttgtcaaact tttcaatttc agagtttaca
     4501 ttgcgataat aatccataag attcttaact tcaaattcct tcttcggtat agtattagga
     4561 tggggttcgt taaagggttc tacggccaag atggctggat gtccaagacc tccatttaat
     4621 gatttgaaga atttaacggt ctgcccaatg gttttctcta aatgcgtacg aacaggatag
     4681 ttcttaagcc cctcatctaa gtttgtcaaa tcattctccc agaacgattt caaggtctct
     4741 tttagggact tgctaatcat gtatttaaat tgccactttt tgtcaggctt ggtaggagcc
     4801 tttggctttt catggtcttc attgatagca actgcccaat cagggaatcc atcaccaccg
     4861 tatacttcgt tggcaatatc ttgatggaaa tctaaaataa cgtaaaggtt tcttgcatac
     4921 agctcgtcaa ttatttcctt catgtattca agatacttct ttccctctgg tagcagttca
     4981 tccagatttg cgtttgggcg tggctctatg gctttccacg atactaagag acgtataata
     5041 ttaaacccaa ggtttttcat tagatctaat cctgacctta cagattcgat ttccttattc
     5101 aaatcaagct ttgataactc atgtacctca agaggtgcta ttggaaggta aggaggcatc
     5161 ttgctccttg aaccaaaatt cactcctcta aagaggagat atctattttc ttgatcccta
     5221 aaccaagatc cgctcttcca aattcctttt ctatcttctg cggaaggttc ttgctcatcc
     5281 acagaggctt ttgttagggt cacgatgccc tgtcttccct tacgtctacc cctcaatcct
     5341 gctaatatta tttgtattcc acttatcgca agggctataa tcgtcatgac aacaagtagt
     5401 gcaatgccta gtggcggata tgccaggacc aatatagcca aagacgtaat taatactcct
     5461 aacgcaacgg aagagatatc atatgattct tccttctcct tcttttttaa acctccaact
     5521 attcttatta taccattagc tagtaaacca aacccaagaa aaatgacaag ccattttgtg
     5581 gcaaattcag ggaagaagaa gcccgatcca atatagatta ttagaccgac gcctactcct
     5641 atattgatca aacgggtcga tctttttact ccctttgcga atattccact aaccaacctc
     5701 tctgccccaa gtaatattaa gccaattcca gccaaaaata gccagatata agccccagca
     5761 gtcccagc
//
LOCUS       DASUMD010000079         4206 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1344542, whole genome shotgun sequence.
ACCESSION   DASUMD010000079 DASUMD010000000
VERSION     DASUMD010000079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4206)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4206)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4206
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1344542"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            118..774
                     /gene="ureG"
                     /locus_tag="VFX26_02080"
     CDS             118..774
                     /gene="ureG"
                     /locus_tag="VFX26_02080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016530 - metallochaperone activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0019627 - urea metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreG"
                     /protein_id="HEX5573295.1"
                     /translation="MSSNRIPRVGIGGPVGSGKTMLIEQIVPILSAKGYKAGIISNDV
                     VSKEDADRMRQNLATEKGLVPEELVIGVATGGCPHTAVREDPSINLSVVEEMESKYNY
                     LDLILIESGGDNITTTFSPALADYFIYIIDVTGGDKYPRKRGLGIENCDLLVINKIDI
                     APYVGADLKIMERDAKIVRNKKPTVFVNSRTGQGVDIVVSYIIKDLLFEASPKTLVNN
                     "
     gene            879..1814
                     /locus_tag="VFX26_02085"
     CDS             879..1814
                     /locus_tag="VFX26_02085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreD"
                     /protein_id="HEX5573296.1"
                     /translation="MKMTIDYYTPRNIPSEIGAYLAEPFHPGVSNSGKVGILRIKFER
                     DTDTEKTVIREQYCRVPLCIQRALYLEESLPAMAYVYIVSPSGGILQGDRYRIDITLG
                     NNAFAHVTTQGATRIYKMEKSYATQMISINVGEGSYFEYIPDQIIPFHNSRFYQEVEL
                     SVHDNATMLYSEMIVPGRVESGEAFEYDICYIKTVAQNHLRKPRFMDIIKLEPKKEDL
                     TVEGILGKFQVVGTVYIITRELYVKGLKHEIIEKINEYEDNISGGVSILPTRQGIVVR
                     ILGNTAGDVKSLIFEVVGITRNQILGVSFSGVRKT"
     gene            complement(1905..2423)
                     /locus_tag="VFX26_02090"
     CDS             complement(1905..2423)
                     /locus_tag="VFX26_02090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573297.1"
                     /translation="MYTSIIAVAMLSIFNLHMSIFATELNLTDSMTNDFAQNTKSKIN
                     NLVTNALNDTSNVLNSSLLINDYNQISDNVVVSQNTVQSFMRSNGSSSDDSSSIIKNK
                     VTTTNGVCSSDKAGGNGNDTLYSSGNCNDMLTGGLGADKFTCGEGNDTIRDYNSKEGD
                     VILDRQNCEEIP"
     gene            2910..>4206
                     /locus_tag="VFX26_02095"
     CDS             2910..>4206
                     /locus_tag="VFX26_02095"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEX5573298.1"
                     /translation="MVQIQNIHAKLVLSLISLLLLALVTDSGSGSFLQKGLAASDTHI
                     VASGDWHCTPDAQKAVNMAKSMNPQLVLGLGDYSSEKTKDCWVNLIKPVASITKIAIG
                     NHDNHYDGLADSYLKHYGLSKQFYSFDIKNIHVLTMASEEEFKAGSEQYNFVVDDLRK
                     AANNPDIKWIVVTMHHPLYSSPNECSLSDCQGDEELSKTYHPLFDKYGVDIVLQAHVR
                     NYQRSFPLDFSQESPSKPIVTSTSKGEYKNPDGIIFAIVGTGGGELKHGLEEQSSFMA
                     YQQDSKFGILDMHFSENKLDAKFVAIDGDIMDHFSIEKKAKKAVIERISDDTFGDTNV
                     KQVSDEQPTKAKPLADEAIVQEDKPSTTTFKLDEEATTGTKAKPLADEAKVLEDKPSI
                     TFKLDEEATTGTKAKPLADEAKVLEDKPSITFKLDEEATT"
BASE COUNT         1448 a          705 c          802 g         1251 t
ORIGIN      
        1 tagaaagacc aatttcaaat atgtggcaat ttgcaccacg tctggatatt ctgcaaatga
       61 aacatgaaat gatggactca aaaatgttta ttacatgaaa attgtctaaa atttgttatg
      121 tcttctaatc gaatccctcg agttggaatt ggtggtcctg tcgggtcggg taaaactatg
      181 ctaatagagc agattgttcc tatactttct gctaagggtt acaaagcagg aataatttcc
      241 aatgatgtcg tctcgaaaga agatgcagac aggatgaggc aaaatcttgc aacagaaaag
      301 ggacttgttc ctgaagaatt agtaatagga gttgccacgg ggggatgccc tcatactgct
      361 gtgagagaag atccatcaat aaatctctct gttgtagaag aaatggaatc aaaatacaat
      421 tatctggatt taattctgat agagagcgga ggggacaaca ttacaacaac ttttagtcca
      481 gctctggctg actatttcat ttacatcatc gatgtaacag gtggtgacaa gtatcctagg
      541 aaaagagggc ttggaataga aaactgtgat cttctcgtaa taaacaagat agatattgct
      601 ccctatgtag gggctgatct aaagataatg gagcgagatg caaagattgt tcgaaataaa
      661 aaaccgacgg tttttgtcaa ttctagaaca ggccaaggag tggatattgt agtatcttac
      721 atcataaagg atcttctttt cgaagcctca cctaaaacac tggtaaataa ctgacgataa
      781 ctaaattgat tgtgcactat gcaaatagca acaagaatta cacaaatgga atctgaatta
      841 aaaacactga agggattcca aaaagttttg agtcaagaat gaaaatgacc atcgactact
      901 atacaccgcg aaatattcca tcagagattg gggcttatct cgcagaacct ttccatcctg
      961 gggttagcaa ttccggaaaa gttggcattt tgcgcataaa gtttgaaagg gacactgata
     1021 cggaaaaaac tgttattaga gaacaatatt gtcgcgtacc actatgcata caacgtgccc
     1081 tgtatctgga ggaaagtctg cctgcaatgg cttatgttta tatcgtttcg ccttctgggg
     1141 ggatattgca aggtgaccga tatcgtattg atataacgct cggtaacaat gcttttgctc
     1201 atgttaccac acagggagcc actagaattt acaagatgga aaaaagttat gcaactcaga
     1261 tgatcagtat caacgtcgga gaaggaagct attttgagta tatacccgat cagataatac
     1321 catttcacaa ttctagattt taccaagaag tagaattgag tgttcatgac aacgcgacaa
     1381 tgctctattc agaaatgata gttcctggca gagtagaaag tggtgaagcc ttcgaatatg
     1441 acatctgtta cattaaaact gtcgcacaga atcatttacg caaacccaga ttcatggata
     1501 ttataaagtt agaaccaaag aaagaagact tgactgttga aggcatattg ggaaaatttc
     1561 aagtagttgg cacagtatat atcatcacaa gagaactcta tgtgaagggt ctcaagcatg
     1621 aaattattga aaagatcaat gaatacgaag acaatatatc ggggggcgtg tcaattcttc
     1681 caaccagaca aggaatagta gttaggatac taggtaacac ggctggagat gtgaagagtc
     1741 ttatattcga agttgttggg ataacaagga atcaaattct tggtgtctcc ttcagtggag
     1801 taagaaagac ataatttcaa ttgaaatcaa acttgtttac acagatcata tagtaaatca
     1861 taatctgttc tactttacct taggtaggaa actagcagaa atttctacgg tatttcttca
     1921 caattctgtc gatctaaaat aacatctcct tcttttgaat tataatctct tattgtatcg
     1981 tttccttcac cacatgtaaa tttatcagcg cccaagccac ccgtcagcat atcgttacaa
     2041 ttacctgaag agtatagtgt atcgttacca tttccgcctg ctttgtcaga actacagact
     2101 ccatttgttg ttgtaacttt attcttaatt atggaactac tatcatcaga actactaccg
     2161 ttacttctca tgaaggattg aactgtgttc tgagatacta cgacattgtc tgaaatttga
     2221 ttgtagtcgt taattagcag actagaattt aggacattgc ttgtatcatt cagagcattt
     2281 gtgaccaggt tatttatttt ggatttcgtg ttttgggcaa aatcatttgt catcgaatct
     2341 gtcaagttga gttcggtagc aaatatagac atatgtaaat tgaaaattga caacatagcc
     2401 actgcaatga tgcttgtata caagatagca ttcatgctta ttatttcata aggtgaagta
     2461 ctttattatt tttattctta ttttttggaa tttggcaaaa tgaactaatc gtactcaaaa
     2521 acaaaaattt ggcaaatttt caggcgagaa ccttatacta cacctttatt ttgtcaataa
     2581 actctaatat tcaacattac tattgaattc attgggtagt ctgtgtgttg aaaagatcat
     2641 taagaactat caatttgtat tactcatttg ttgtcgaatt gatttattta ccacatgaga
     2701 gaatgctgac aatatttact gaactaaata gacggtaaaa attttataga acatattttc
     2761 ttcaaattgt gtataaaatt tagatagtac tatctaaaat agattgaatt ggactattat
     2821 ttagaaaaat aatttttgaa attttcatac taatattgta aagaactact taaagtcaat
     2881 attatatcaa aattattcag attaggatat tggttcaaat tcaaaacatt catgcaaaat
     2941 tagtattgtc attgatttca ttgttgttac ttgctttagt aactgattct ggatctggct
     3001 catttttaca aaaaggtcta gcagcatcag atacacacat tgttgcatct ggggattggc
     3061 actgtactcc cgacgctcaa aaagcagtaa atatggcaaa gagtatgaat cctcaattag
     3121 tattgggact tggagattac tctagcgaga aaacaaaaga ttgctgggtt aatcttataa
     3181 agccagtggc ttctatcaca aaaatcgcta ttggcaatca tgataatcat tatgacggct
     3241 tagctgattc atatctcaaa cattatggac tttcaaaaca gttctattct tttgacatta
     3301 aaaatataca tgttttgact atggcatcag aagaagaatt caaagcaggc tctgagcaat
     3361 ataattttgt agtagacgat cttaggaagg cagcgaataa tccagacata aaatggatcg
     3421 tagtaaccat gcatcatcct ctttattctt cacctaacga gtgtagtctt tcagactgtc
     3481 agggtgacga agaattgagc aaaacatatc atccactgtt tgataaatat ggagtagata
     3541 ttgtcctgca ggctcatgta cgtaactatc agagaagctt tccattagat tttagtcaag
     3601 agtctccatc aaagccaatt gtaacaagta ctagcaaggg agaatacaag aatcccgatg
     3661 ggataatttt cgctatagtt ggcaccggag gtggtgaatt aaaacacggt ctggaggagc
     3721 aatcttcttt tatggcatat cagcaggatt caaaattcgg gattcttgac atgcactttt
     3781 cagaaaataa attggatgct aaattcgttg ctattgatgg agatataatg gatcatttta
     3841 gtatagaaaa gaaggcaaag aaggcagtaa tcgaacggat tagtgatgat acgtttggtg
     3901 acactaacgt aaaacaagtt tcagacgaac agcctactaa agcaaaacca ttagcagatg
     3961 aagcaatagt acaagaagac aaaccatcta ctactacctt caaacttgat gaagaagcaa
     4021 caactggtac taaagcaaaa ccattagcag acgaagcaaa agtactagaa gacaaaccat
     4081 ctattacctt caaacttgat gaagaagcaa caactggtac taaagcaaaa ccattagcag
     4141 acgaagcaaa agtactagaa gacaaaccat ctattacctt caaacttgat gaagaagcaa
     4201 caactg
//
LOCUS       DASUMD010000080         2143 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_570675, whole genome shotgun sequence.
ACCESSION   DASUMD010000080 DASUMD010000000
VERSION     DASUMD010000080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2143)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2143)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2143
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_570675"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..676
                     /locus_tag="VFX26_02100"
     CDS             <1..676
                     /locus_tag="VFX26_02100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573299.1"
                     /translation="YTNESVGSIHSEREDDLLGQIASINSDIIKISNFVNKYNSIFPD
                     LDPTTKALVAANIADASLLEYGLSTGLNSKKAAGLLNMSIGMVMKMNESSNMNMTDGT
                     SGHGYDKMNSMFASNQSSSHLLNQSDRDVKILADYETSSRLAELLKILFANYLQNANL
                     ENSSGMMPIPANMKINAIRELGQGIENLALAVKGYAPVEEVYSIVHGQIHPNLFIAFG
                     LKLKSE"
     gene            767..1480
                     /locus_tag="VFX26_02105"
     CDS             767..1480
                     /locus_tag="VFX26_02105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573300.1"
                     /translation="MNDFRLLDKITELRTVCKIISQLKSQLIEQLPHYGHDALFLQND
                     EITTGLLNNKTEIKIHLLTGELLYFDSENGHIVDLTHDKFDEKLESIVTKYGLDMPKM
                     SSFTFRHKYLFEYIPFAKKVNKSLELFRMKLRDHFTQVHLWPDGFDFSVEAFTMKNNE
                     QIGVGVSPGDDNYESPYLYVNPYPFNENIVDQSLPIGKWHTSGWNGIKVEWKELENKI
                     EQEIASEIFDLYTIALRNF"
     gene            complement(1764..2105)
                     /locus_tag="VFX26_02110"
     CDS             complement(1764..2105)
                     /locus_tag="VFX26_02110"
                     /inference="COORDINATES: protein motif:HMM:NF012911.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HEX5573301.1"
                     /translation="MQKKNVNFRDSKNSDNDGKEKISVQLLVTGKVQGVYFRYNLQQI
                     AKKNSVVGWVRNLPDGRVEALLEGNKDDVDKVIEWSQMGPENARVDDVKTDNLQYEGK
                     FRDFVIQHDEP"
BASE COUNT          717 a          383 c          351 g          692 t
ORIGIN      
        1 ttacacaaac gagtcagtag ggtcaatcca ttcagaaaga gaagatgatt tattaggcca
       61 aattgcttct atcaacagcg acataatcaa gatctctaat tttgtcaata aatacaattc
      121 cattttccca gatcttgacc caactacaaa ggcacttgtt gctgctaata ttgcggatgc
      181 atcgcttcta gaatatggct tatcaactgg acttaactcg aagaaggcag ctggtctgct
      241 caatatgagt atcggaatgg ttatgaaaat gaatgaatcg tccaatatga atatgacaga
      301 cggtacttct ggacatggtt atgataaaat gaattcaatg tttgcaagta atcaatcctc
      361 aagtcattta ttaaatcaaa gcgatagaga cgtgaaaatt ctggccgact atgagacttc
      421 ttcaaggctt gctgaattat tgaaaatatt atttgctaac tatctacaaa acgccaactt
      481 ggaaaattcc tctggtatga tgcctattcc agcaaacatg aaaattaacg caattcgaga
      541 attaggacaa gggatagaaa accttgcttt agcggttaaa ggatatgcac cggtggaaga
      601 ggtttacagt attgttcatg gacaaatcca tcccaatcta ttcatagcat ttggtttgaa
      661 gctgaagtcc gaatgatccg agttagtcct gaaccttata aataacaata gacctagttt
      721 actaatggat aatagtattt aacacatatt tacatataca aaacgaatga atgattttag
      781 gttactagat aaaatcactg aattgcgtac tgtctgcaaa ataatctctc aattaaaatc
      841 acaattaata gagcagttac cgcattacgg ccatgatgcg ctttttttac agaatgatga
      901 gataactact ggtttactga ataataagac agaaataaaa attcatttac ttactggaga
      961 gctcctttat tttgatagtg agaatgggca tattgttgac ttgactcacg ataaatttga
     1021 tgaaaaatta gaatcaattg ttactaaata cgggctcgat atgccaaaga tgtcgtcttt
     1081 cacttttcgt cataagtact tatttgaata cattccattt gcaaaaaagg tcaacaaaag
     1141 tcttgaatta ttcagaatga aattaaggga tcattttacg caagtccatt tgtggcctga
     1201 tggatttgat ttctcagttg aagcctttac gatgaaaaac aacgaacaaa ttggcgttgg
     1261 tgtctctcca ggagatgata attatgaatc accctatctg tacgtaaacc cttacccgtt
     1321 taatgaaaat attgttgacc aatcattacc cataggcaag tggcatacat ctggttggaa
     1381 tggaataaaa gtggaatgga aagagcttga aaacaagata gaacaagaaa ttgcctctga
     1441 aatatttgat ttgtatacta ttgcactgcg caatttttga ttaactctgt atatgtaaga
     1501 cccgaacaat catttatcac actaatcttg gtacacaaaa ctagtattag taacatattt
     1561 ggtactaatg catggtcact cttaattaaa gtattagatc caaaatcttt acaatttatt
     1621 cattacttca tttcattatt ttccgtaact caattgcaat tccgaaaatt ataaaatctg
     1681 ccatgaatct aaaaatcact atttgctatg gaatgtcgtt aagttgagtt ttattttatt
     1741 ctcacgtgaa ataaatagcg gagctaaggt tcatcatgtt gaatgacaaa atctctaaat
     1801 tttccttcat attgtaagtt gtccgttttt acatcgtcca ctcgtgcatt ttcgggaccc
     1861 atctgactcc actctataac tttatcaaca tcatctttgt ttccctcaag taaagcttca
     1921 acccgcccat caggtaaatt gcgtacccat ccaactacag aatttttctt tgcaatttgt
     1981 tgtagattat atctaaaata cactccctga actttgccgg taaccaacaa ttgaacggaa
     2041 atcttttctt taccatcatt gtctgaattt ttggaatctc tgaaattcac attcttcttc
     2101 tgcatggtgc tattttatat atattaaatc aaaaagattc acg
//
LOCUS       DASUMD010000081         6123 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1013122, whole genome shotgun sequence.
ACCESSION   DASUMD010000081 DASUMD010000000
VERSION     DASUMD010000081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6123
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1013122"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..202)
                     /locus_tag="VFX26_02115"
     CDS             complement(<1..202)
                     /locus_tag="VFX26_02115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573302.1"
                     /translation="MSHFDLHMTMILPEDISERISSFISGRLDFPYVKKDELISLLYL
                     YGKSNAVLDHPERVLAIAKKTVE"
     gene            275..577
                     /locus_tag="VFX26_02120"
     CDS             275..577
                     /locus_tag="VFX26_02120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573303.1"
                     /translation="MSTIDYGKAVHLIVHGQRDLIDSIRHKLTSLGFADNKLIPASLQ
                     KTGNIGEYVAMAWPPMHATEIIISEITGINQAEAKDNVMGAWSNVSQKEISRIPLP"
     gene            complement(692..880)
                     /locus_tag="VFX26_02125"
     CDS             complement(692..880)
                     /locus_tag="VFX26_02125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573304.1"
                     /translation="MPPSPALTFDAHSIQISSENGKLFEHSLQTGFPQSGQSFVEVSE
                     LHKEQILFFITIISGLEG"
     gene            complement(965..1747)
                     /gene="cobM"
                     /locus_tag="VFX26_02130"
     CDS             complement(965..1747)
                     /gene="cobM"
                     /locus_tag="VFX26_02130"
                     /EC_number="2.1.1.133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0046026 - precorrin-4
                     C11-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-4 C(11)-methyltransferase"
                     /protein_id="HEX5573305.1"
                     /translation="MIEPNTIYFVGSGPGDPELITLKAKRLLENADVVVYSGSLLNPK
                     LLEFAKKDATLHDAALLDRTKIYEILRDSTKQGKLAIRFHDGDPALFSTIREQIDKLN
                     LDGINCKVVPGITAILGAASSLNLELTLPGITQTLIITRAELRTPVPEGERISNLATH
                     GATMAFYLSVHLIRNIVDELIKGGSYQTSTPAAVVYRATWEDEKIIVGTLGDIVDKVR
                     EAKITKTAIIIVGNVINPTSYEFSKVYDPQFTHGYRKADKSK"
     gene            complement(1740..2462)
                     /gene="cobI"
                     /locus_tag="VFX26_02135"
     CDS             complement(1740..2462)
                     /gene="cobI"
                     /locus_tag="VFX26_02135"
                     /EC_number="2.1.1.130"
                     /inference="COORDINATES: protein motif:HMM:TIGR01467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030788 - precorrin-2
                     C20-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-2 C(20)-methyltransferase"
                     /protein_id="HEX5573306.1"
                     /translation="MKLSCIGCGPGDPDLLTVKAVDRIKKADAIFTPTSKEGKPSIAL
                     SIARKYINESTTTITNLIFPMIKDKDSLKVQWKTNSQIIADTVHSGKNCVYLTVGDPS
                     LYSTWNYIHKELKEKHDDIDIEIIPGIPSFFAFAAQAKMSLVEGDQTLGIVPACYDLD
                     KIRQTVASCDSIIFLKDGRYFDSVIEILFETGFSDNSVITIAQDVSVDEEILETKKLK
                     DLRNTKNPAGKYFSIMVARKND"
     gene            complement(2573..3235)
                     /gene="cbiT"
                     /locus_tag="VFX26_02140"
     CDS             complement(2573..3235)
                     /gene="cbiT"
                     /locus_tag="VFX26_02140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046025 - precorrin-6Y
                     C5,15-methyltransferase (decarboxylating) activity
                     [Evidence IEA];
                     GO_process: GO:0046140 - corrin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-6Y C5,15-methyltransferase
                     (decarboxylating) subunit CbiT"
                     /protein_id="HEX5573307.1"
                     /translation="MLHIQASTHEKYDLKEFNFKAFYVDMMLWKYLTPGIPDELFERS
                     ENVPITKEDIRSIVLSKLRLRKNYSVIDVGCGSGSITIEICLHVSSKNVYAIDLDKNA
                     IDLTKKNLDKFGVSANLIHSKAEEVLPSLPTVDAIIVGGTKGKTEKIIELCISKLKKD
                     GRLVIDTILIETMYKALKTVKKQKMRDIEVTQVTIAKGKSMSSGTMLISRNPILILSA
                     TR"
     gene            complement(3207..3488)
                     /locus_tag="VFX26_02145"
     CDS             complement(3207..3488)
                     /locus_tag="VFX26_02145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573308.1"
                     /translation="MDLLDKIYYMRAFLGVLCGIILGFILNPSNYSASVPIIIALALF
                     FYIISYVIAKRIGLRLRTEDRKKISTNGVFPFIFLLIMFIIVTYTGLHA"
     gene            3579..5558
                     /gene="rqcH"
                     /locus_tag="VFX26_02150"
     CDS             3579..5558
                     /gene="rqcH"
                     /locus_tag="VFX26_02150"
                     /inference="COORDINATES: protein motif:HMM:NF041120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome rescue protein RqcH"
                     /protein_id="HEX5573309.1"
                     /translation="MELSGIELHYLVNKINSKVSSGFYVSNISSITKNSILLKLHHPI
                     EPDIMLMVSTKGIWLTNKKYKQVEENQFVKTLSKEIERARISSISQPGSERIFLLHFV
                     NRDDKVRILIVEIFGKGNVILCDESMKILWILNPVEVRHRTLNTGSDYVLPPSRGEDV
                     LHITVESMMDSASPQPEDIEVVKWLGKSTSLPRKYVEEILFQSGNNTKFAHQLSNKDI
                     EIIYEKTKEITDKVLDEKNHEPSVIMDKMGVAIDASPISMSKEANAKKVETYMEAIDK
                     VLSNEILSIGRSLKTEEADRKILELEHDLEEQNKAKMSVISKSKSLRSVAHELMKLSS
                     LGIQDMNDNSVKTLLEKNDSNIVLENGLTYLVLLNERVKLESSIPKFSSQLFSRAKEL
                     ERGAGNIDKASEELRSRIEKLQGQTQKIHEKIQFNALESKQWYERYRWFVTTDGHLVI
                     GGRDASSNSAVIRKHMTEDDIVFHAEIHGSPFFLVKNARNQVNENTNLIEETAQATVS
                     FSRAWKDGLSSGDAYWVFPNQVKKGAPTGQFLPKGSFVIEGKRNFCKGIELKLSIGLV
                     KIENRYTIVSGPLNAIKKRSLVFASLLPGGSDPMNLAKKIKSEFVRVISEFDSDLADY
                     LKKVLLDDFIRMLPTGQSKIEHIERGQSVNDVKIG"
     gene            5653..>6123
                     /locus_tag="VFX26_02155"
     CDS             5653..>6123
                     /locus_tag="VFX26_02155"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEX5573310.1"
                     /translation="MAKRLVENTDANMTTRVLVRDIMNSPVITAGPSDTVVDIASKMK
                     DHNIGSVIITENEKPVGIVTDWDVVSKVVASNLDPSSVDGAKVMQTIHTVEAGEGITE
                     AARILRKNNIKRLGVVYKDRLAGIISSSDVIAVTPELVDVVSEKAGMIRGEIGRP"
BASE COUNT         2034 a         1043 c         1143 g         1903 t
ORIGIN      
        1 tttcaacggt tttctttgca attgcaagaa ctctctcagg atgatctaat actgcattac
       61 tttttccata caagtataag agtgaaatta attcgtcttt ctttacataa ggaaagtcta
      121 atcttcctga gatgaatgaa gaaatccttt cagaaatgtc ctcagggaga atcatagtca
      181 tatggagatc aaaatgtgac atcaaaaatc aatcaacaat accatataga taattatctt
      241 tataggactg actgatcgaa aaactaatgg gaaaatgtcg actattgatt atggtaaagc
      301 tgtacatttg attgtacatg gacaacggga tctgatagac tctataaggc ataaacttac
      361 ctcattgggt tttgcagaca ataaattaat tccagcctcc ttacaaaaaa ctggcaatat
      421 tggtgaatat gttgcaatgg cctggcctcc aatgcacgcc actgaaataa ttattagtga
      481 aataacgggt ataaatcagg ccgaagcaaa agataatgtg atgggcgcct ggtcaaatgt
      541 tagtcaaaag gaaatatcaa gaattccatt accatgaata aatcagaaac atggtgtcaa
      601 aaatttagac aatattcttc cccataatct tagaatttag atttccacac agttgtaatt
      661 catgagatgg ctaagaatat gcgatatact tttagccttc aagaccacta attatagtga
      721 tgaagaataa tatttgttct ttatgcaatt cagagacttc tacaaaggac tgtcctgatt
      781 gtggaaaacc cgtttgtaag gaatgttcga aaagttttcc attttcagaa gatatttgta
      841 tcgaatgcgc atcaaaggtc aaggctggac tagggggcat gcggaaggat gaagaaattt
      901 tctaaccgaa cgacagaaca ataccatgat accaaataat ccagtcctgt taccttataa
      961 aatactattt tgacttgtct gctttcctat agccatgtgt aaactgtgga tcataaactt
     1021 ttgaaaactc gtagctggtt ggattaataa catttccaac aataattatt gcggttttgg
     1081 ttattttggc ttccctcacc ttgtccacaa tatcaccaag agttccaact attatttttt
     1141 catcttccca tgtggctctg tataccacag ccgcaggagt cgaggtttga taggagcccc
     1201 ccttaattaa ttcatccact atgtttctta tcagatgaac actgagatag aaagccatag
     1261 tagcaccgtg agttgctaag ttagaaattc tttcaccttc cggtaccgga gttctaagtt
     1321 cggcccttgt gataatgagt gtttgagtaa ttccgggaag ggttaactct aaattcaacg
     1381 aagaggctgc acctaagatt gcggttattc ctggaacgac cttacagttt atgccatcta
     1441 agttcaactt atcaatttgt tccctaatag tgctaaataa cgcaggatct ccatcatgaa
     1501 aacgtatggc aagttttcct tgttttgtgg aatcccttaa tatttcataa attttagttc
     1561 tatccaaaag agccgcatca tgaagagttg cgtctttttt agcaaattca agtagttttg
     1621 gattgagtaa cgatcctgaa taaaccacga catctgcatt ttccaataat ctttttgcct
     1681 ttaatgttat gagctccgga tctcctggac cggagccgac aaagtaaata gtattgggtt
     1741 caatcattct ttctagccac cattattgaa aagtattttc cagctggatt ttttgtgttt
     1801 cgcaagtctt ttaatttctt tgtttctaaa atttcttcat ccacggatac atcttgagca
     1861 atagtaataa cggaattatc actaaaacca gtttcaaata gtatttcaat cacactgtca
     1921 aaatatcgcc cgtctttcag aaaaattata gagtcacaag atgcgaccgt ttgtcttatt
     1981 ttatccaaat cataacatgc aggaacgata ccaagtgttt gatcgccctc cactagactc
     2041 atttttgctt gtgctgcgaa tgcaaagaag gatggaatgc caggaatgat ctcaatatct
     2101 atatcatcat gcttttcctt caattcttta tgaatataat tccatgtact gtataaggaa
     2161 ggatctccta ctgtcaaata aacgcaattc tttccagaat gtactgtgtc tgctattatc
     2221 tgggaattag tcttccattg tactttgagt gaatctttat cttttatcat tggaaatatt
     2281 aagtttgtaa ttgtagtggt tgattcgtta atgtattttc tagctattga taaggctata
     2341 ctgggcttac cttcctttga ggtcggggta aagatggcat ctgctttctt gattctatcc
     2401 acagccttta ccgttagcaa atccgggtct ccgggtccgc aacctataca tgaaagcttc
     2461 atgatttgag ttgtaaaaaa ttgtgttatt taaattaaaa agaatctccc agcaatcgag
     2521 ttccaacaaa ttgtgagtct atccacgtga attaacatca accttgaatt ctctatcttg
     2581 tagcagacaa aattaatatg ggatttctgg aaataagcat agttccactt gacatacttt
     2641 ttcctttggc tattgtgact tgagtaacct caatatcgcg cattttttgc ttcttgaccg
     2701 tcttcagggc tttatacatt gtctctatga gtatggtatc gataactagt cttccatcct
     2761 tttttaattt agaaatgcaa agctctatga ttttttcagt tttacccttc gttccaccga
     2821 caataattgc atcaactgtt ggtagtgatg gtaagacctc ttcagctttg gagtggatta
     2881 aatttgcaga aacaccaaat ttatctagat ttttttttgt caagtctatg gcattcttat
     2941 ccaaatcaat agcgtataca tttttagaac ttacgtgtag acatatctct atagtaatgc
     3001 ttccactgcc gcatcctaca tcaatcaccg aataattttt tcttagacgt aatttactca
     3061 gaacaattga acggatatcc tctttagtta ttggaacatt ctctgagcgc tcgaacagct
     3121 cgtcgggtat gcctggcgtt aaatatttcc ataacatcat gtctacataa aatgccttga
     3181 aattaaattc ttttagatca tatttttcat gcgtggaggc ctgtatatgt aacaattatg
     3241 aacattatca gcaaaaagat aaatggaaaa acaccattag tagaaatttt ttttctatct
     3301 tcagttctta atctcaaacc aattcttttt gcaataacat acgaaattat atagaaaaat
     3361 agtgcaagtg cgataattat gggtacagac gctgaatagt tggaaggatt taagataaaa
     3421 cctaggataa taccacacaa aactcctaaa aaggctctca tatagtatat cttatctagt
     3481 aggtccaatt gcttttttca cattaattgc aggtttaatt cctttcgatt gctatttgaa
     3541 tttttaatta atattcatcc tcgtctacag tcattcatat ggaattatca gggatagagc
     3601 tacattatct tgtaaacaag ataaattcaa aggtatcatc gggattttac gtgagtaata
     3661 tttcatctat cactaaaaat tctattcttt tgaaacttca tcatccaata gaacctgata
     3721 ttatgcttat ggtttctacc aagggaattt ggttaacaaa taagaaatac aaacaagtag
     3781 aagaaaatca atttgtaaag acactaagta aggaaataga aagggcaagg ataagttcta
     3841 tatcgcagcc tggtagcgag agaatttttt tactccattt tgtaaataga gacgataaag
     3901 taaggatatt gatagttgaa atcttcggaa aggggaatgt cattttatgc gacgaatcga
     3961 tgaaaatact ttggatcctg aatccagtag aagtaaggca cagaactctc aatactggat
     4021 cagattatgt tctcccacct agtagaggtg aggacgtttt acacattact gtagaaagta
     4081 tgatggatag cgccagtcca caacccgaag atatagaagt ggtaaaatgg ttgggaaaat
     4141 ctacatcctt accaaggaaa tatgttgaag aaatactatt tcaatcggga aataatacaa
     4201 agtttgctca ccagcttagt aataaggaca tagaaattat ttatgaaaag accaaagaaa
     4261 taactgataa agtactagat gaaaaaaatc acgaaccctc agttattatg gataagatgg
     4321 gtgttgcaat agacgcatct cctatttcga tgtcaaaaga agctaatgca aagaaagttg
     4381 agacatacat ggaggcgata gataaagtac tgagtaatga gattttatct atcggtagga
     4441 gtctgaaaac agaagaagca gacaggaaaa tattggaatt ggaacatgac ttggaagaac
     4501 aaaacaaagc aaaaatgagt gtaatttcaa aatcaaaaag tcttagaagc gttgcccatg
     4561 aattaatgaa gctctcatct ttgggtatcc aagatatgaa cgataattca gtcaagactc
     4621 ttttagaaaa aaatgattct aacatagtct tggaaaatgg tttgacctat ctggttttac
     4681 taaatgaaag agtaaagtta gaatcaagta ttccaaaatt ttcgtcacaa ttattttcta
     4741 gagcaaaaga attagaacgt ggtgccggca atatcgacaa agcaagtgaa gaacttagat
     4801 caagaattga aaaactgcag ggtcaaacac aaaaaatcca tgaaaaaatt caatttaatg
     4861 cattagaatc aaaacaatgg tatgagcgat atcgttggtt cgttactact gacggccacc
     4921 tagttattgg tgggagagat gcatcttcga attcagcagt gattcgcaaa cacatgactg
     4981 aggacgatat cgtgtttcac gcagaaattc atgggtctcc tttttttctc gtaaagaatg
     5041 cgagaaatca agttaatgag aataccaact taatagagga gacggctcaa gccacagtat
     5101 cattcagtag agcgtggaag gatgggttgt caagtggaga tgcatattgg gtattcccta
     5161 atcaggtaaa gaaaggtgct cctacgggtc aatttcttcc aaaaggctct tttgtcattg
     5221 aaggcaaaag aaatttttgc aagggcattg aactaaaatt atcaataggt ttggttaaaa
     5281 ttgaaaatag atacacaata gtttccggac cgttaaacgc catcaaaaag agaagtttgg
     5341 tatttgcttc gttgttgccg ggtggttccg atccgatgaa tttggccaag aaaataaaaa
     5401 gtgaattcgt aagagtaatt tctgaatttg attctgattt agcggattat ttaaaaaaag
     5461 tacttttgga tgattttatt agaatgttgc caacaggaca atccaagata gaacatattg
     5521 aaaggggcca atcagtgaat gatgttaaga ttggttaact tttgatacgc aggtgatcct
     5581 tattcttgtg attcattcct ctatacaacg aagattcgaa agataattaa accaaactaa
     5641 ctaaatgatc ttgtggcaaa aaggctagta gaaaataccg atgcaaacat gactacacga
     5701 gtactagtaa gagacattat gaacagccct gtcattacag ctggaccaag cgataccgtt
     5761 gtcgacattg caagtaaaat gaaagatcat aatattggca gtgtaattat taccgaaaat
     5821 gaaaaacccg ttggaattgt tactgattgg gatgttgtat caaaggtagt ggcaagcaat
     5881 ttagatccat catcggttga tggtgcaaaa gtaatgcaaa caatacacac tgtagaagca
     5941 ggagaaggta taactgaggc cgcacgcata ctacgaaaaa acaacatcaa gagattaggt
     6001 gttgtttata aagacagatt ggctggaatt atttctagct ctgacgttat tgctgttact
     6061 ccagaattag tggatgtagt gtcagagaag gctggtatga ttagaggaga aattggtaga
     6121 ccc
//
LOCUS       DASUMD010000082         2334 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1344701, whole genome shotgun sequence.
ACCESSION   DASUMD010000082 DASUMD010000000
VERSION     DASUMD010000082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2334)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2334)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2334
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1344701"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..398)
                     /locus_tag="VFX26_02160"
     CDS             complement(<1..398)
                     /locus_tag="VFX26_02160"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase family glycosylhydrolase"
                     /protein_id="HEX5573311.1"
                     /translation="MIFTSTEMILIFLLAVVFISATSMGSYASTNELTSKPPINGVVM
                     KGAFVSMKQDDYGSPPAPENYIEDSFKMISEAGLNHVRFVFYWEAYERDPEAFMKEIK
                     SVANAADKYGLKIIYDNHQWHTSSWLEERAT"
     gene            complement(748..1281)
                     /locus_tag="VFX26_02165"
     CDS             complement(748..1281)
                     /locus_tag="VFX26_02165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573312.1"
                     /translation="MKVERKSRYLLAYCTLSGLLASIVISGLLFSLDFISGTPLGTFF
                     AVIGSSLGFYDSNTSPYVGLLLHFATGTVAGNLLGQGAIFWNRLIPTGIKRGIILGIM
                     TGIALWLVLFLPLTTYIIQPKLNMFNFSAPNQYVYVIAQHFQDLYAIIVIGSLFFHVV
                     YGVILGLIAGRLIELKH"
     gene            1828..>2334
                     /locus_tag="VFX26_02170"
     CDS             1828..>2334
                     /locus_tag="VFX26_02170"
                     /inference="COORDINATES: protein motif:HMM:NF020893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEX5573313.1"
                     /translation="MSIVFEILKPVVDFVVSIISNLGYAGVIFLMVLDSAMIPIPSEI
                     ILVFSGYLVTTGTFEPISLIVAGSFGNVVGSILTYYFGLKFGRLFIIRFGKYFFIKEH
                     HLEYTEKLFQKYGDKISFLGRLLPAIRTYISLPCGIAKMNLLKYSIYTFFGSVIWNTM
                     FTYIGMQLG"
BASE COUNT          776 a          419 c          359 g          780 t
ORIGIN      
        1 gtcgctcttt cttctagcca cgaagaagta tgccattgat gattgtcata aatgattttc
       61 aatccatact tatctgctgc attggctact gattttattt ccttcatgaa agcctcggga
      121 tccctttcat atgcctccca atagaacacg aatctgacat gattcaaacc cgcctcagaa
      181 atcattttaa agctatcctc aatgtaattc tcgggagctg gtggcgaacc gtagtcatcc
      241 tgtttcatac tgacaaaagc tcctttcatg acaacaccat tgatgggtgg tttgctagtc
      301 aattcatttg ttgatgcata cgagcccata gaagtagcgc taataaacac tacagcaaga
      361 agaaaaatca aaatcatttc ggtacttgtg aaaatcaaaa caacatgaat aatattccta
      421 gaatgattta atatgtatta ctgattcgtt attcagcact atattcaacg tggcgtttca
      481 ttcaatgtta gtcaagttat atttctgaat ctagaagcag tccatttatc acaaactcat
      541 tttcacctgt tattccaaaa ttagaacgca gtcattatta tcaggggcat cgaacctgaa
      601 taatatataa tcttaagtat atttgttgta aatattataa aataatatta catcaagttt
      661 gttactactt aaacatacaa tgtattccca acgaagtcgt acatcattga ttcaccaaac
      721 taattaatcg aacagaatca accaaaatca atgttttaat tcaataagcc ttcctgctat
      781 caatcctaaa attactccat aaactacatg gaaaaaaagg gaacctatta ctataatcgc
      841 atatagatct tggaaatgct gtgctattac gtagacatac tgatttggag cagaaaagtt
      901 gaacatattt aatttcggtt gtataatata ggtagtcaat ggtaaaaata agactaacca
      961 aagtgctatt ccagtcatga tccctaaaat tatacctcgt ttaataccag ttggaattaa
     1021 tctattccaa aatattgctc cttgtccaag taaattacca gctacagtac cagtcgcaaa
     1081 atgtaataag agaccaacat atggtgacgt attggaatca taaaatccta gagatgatcc
     1141 tattactgca aaaaaagtac ctaaaggagt ccctgagatg aaatccaagc tgaataataa
     1201 tccagatatt acaattgatg ccaataaccc agacagtgta cagtacgcta aaagatatct
     1261 tgattttcgt tctactttca ttacttttaa ttcatgttca taaatttaag ttttacaaca
     1321 tctcattatc tggcaaaata gttggaattt cccagcttgt ttcgatgata ttcagttgcg
     1381 atttgagtcc caaagagcta acactcaaca ctacatgttc attatctaaa gcttaacacc
     1441 aaggtattgt tactattaat tagtgtccat ttaaagactg attatcttta tcagttccac
     1501 gaaccgattc ccaacccaag gaacaaggaa catgcattta cccatattct atcctttgca
     1561 ctaattgtat ttagagctca gatagataga atttgccacc tttttcttaa ttctggaata
     1621 ttgtataaaa ctaattatcg gatatcaaaa tagtactata ttcttatttt cgctctaaaa
     1681 taaattgggt gaataacgag ctggtaacaa atggattctt acaacctctc ggaatataag
     1741 atccaatatt atgaacaata atgaggcttg aaatgattat gccttcttga aaacagatat
     1801 ttatctcatt gattctaaaa caaataaatg tcaattgtct ttgagattct caaaccagtt
     1861 gtagactttg ttgtttcaat tatatcaaac ttaggatacg ctggggtcat attcttaatg
     1921 gtcttggata gtgcgatgat ccctattcca agtgagataa ttttggtttt ttcaggttat
     1981 ttggtcacaa ctggcacatt tgaaccgatt agcctcattg ttgcgggatc gtttgggaat
     2041 gtcgttggat cgattcttac atattatttt ggtttaaaat tcggcagatt atttataatt
     2101 agatttggca aatatttttt catcaaggag catcatcttg aatatacaga gaagttgttt
     2161 caaaaatatg gtgataaaat ttcattcctt ggtaggctat tacctgctat aagaacgtat
     2221 atttctttac cttgcggaat agcaaagatg aatctcctta aatattcaat ttacactttt
     2281 tttggatcgg taatttggaa tactatgttc acctacattg gaatgcaact tgga
//
LOCUS       DASUMD010000083         3420 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_791750, whole genome shotgun sequence.
ACCESSION   DASUMD010000083 DASUMD010000000
VERSION     DASUMD010000083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3420)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3420)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3420
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_791750"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(246..632)
                     /locus_tag="VFX26_02175"
     CDS             complement(246..632)
                     /locus_tag="VFX26_02175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573314.1"
                     /translation="MLFISLALLITYGADVIYSQTTSGDGKSGFLQIDPAVRGIVFGA
                     VPVILSIIGFAISLRKRSTLVVVLLLINGGLIIAGMIGLAAQGGGDNASTLYGTIGLG
                     ILLIVLGIVKGYISKSKPENKQDSVH"
     gene            854..2185
                     /gene="bioA"
                     /locus_tag="VFX26_02180"
     CDS             854..2185
                     /gene="bioA"
                     /locus_tag="VFX26_02180"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: protein motif:HMM:TIGR00508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004015 -
                     adenosylmethionine-8-amino-7-oxononanoate transaminase
                     activity [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HEX5573315.1"
                     /translation="MNSNNLDKRYVWHPYTQMKLWNNSDNITIQSGSSFSFVDSNERS
                     YLDGISNMWCNVWGHDRTEIIDSMKNQLDTLPHSSLFGLVNEPSVKLAKRLITIAKGM
                     SKVFYTDNGSTAIEAALKIAIQYWNNKGKTQKKEFISLKNGYHGDTIGCMSVGYVDGY
                     FSPYRSLLLKTIKVDSPTIRHEKFRQHDIEQYVDKIENILKRKSAKISGMVMESGAQI
                     AGGVYIYPNKFQKEISDLCKKYDVLLILDEIATGFGRLGNMIEYKAQRSEPDIVCFAK
                     ALTGGYFPLAVTLTTSKIFNEFLGDYWDKRQLFHGHTFTGHPVGCTAALTNLALYEKV
                     NLIGKIRINSLVLDRLLKRFAELEICYDIRNKGLLCGIELRKGNKPINIIDKVPIGQY
                     IAGESLKKGVYLRTLGNLITIIPPLAIGKEDLTKIVDTEYQIVEKIQKKIR"
     gene            complement(2205..2795)
                     /locus_tag="VFX26_02185"
     CDS             complement(2205..2795)
                     /locus_tag="VFX26_02185"
                     /inference="COORDINATES: protein motif:HMM:NF012464.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HEX5573316.1"
                     /translation="MKYSFGYLRVSTAEQTILNQRLAIEKWAADNDFKILDFFEDSAV
                     SGKIPAINRPAFREMLNLVRSDRVDSVIVYELSRVGRTFWETLDAIKSIEEYSPLISC
                     SPKELFLQTTDPSVRKLMLGILTWVAEREREMLIQRTKDGMVRAKMSGKNIGRPKKTL
                     DKDTLIKMLSQNIPRNKIAKNLGISKATLYNQIRMI"
BASE COUNT         1150 a          582 c          609 g         1079 t
ORIGIN      
        1 agacttgaac tgatggccca ctggttaaca gccagttaag ctccaaagta accatctttg
       61 aatttgctct accatgctga gctacagcgg cgcatatttt acaaaaatta ttactttaat
      121 taaatgttat ggcactactt ggccactgaa aaacatttct aaattcgaat ttagaaatat
      181 tgaacttaat ttcatgaaaa tttatttttc cttaattatg aatatctaaa tggtctaaat
      241 gttcactagt ggacactgtc ttgtttgttt tctggcttac tctttgatat gtaacctttt
      301 actataccga gtacaattag caatattcct agcccaatag ttccatagag agttgaagcg
      361 ttgtctcctc ctccttgagc agccaagcca atcattccgg ctatgattaa tccaccatta
      421 ataaggagaa gtacgactac caacgtagat ctttttcgta gggaaattgc aaaacctata
      481 atagacaaaa ttactggaac ggcaccaaag acgatacctc ttacggcagg atctatttgg
      541 agaaaaccac tttttccatc accagaagtg gtttgggaat aaattacgtc tgctccatat
      601 gtgattaata aagcaagaga gataaataac aaaattatgg atatttttat attcatcatc
      661 taatgcttat attcagatta ttaataaact tattttgatc atatgaaccc tgaattaacg
      721 cagtatgaaa tagtaccata attcttgaat ttagaaacta gtgtcaaatt agattctaat
      781 taaaaactcc catttataat acaactttca ctcaggctaa tgtacaaata gtgcaatact
      841 atagctattt ctattgaata gtaataatct tgataaaaga tatgtctggc atccgtatac
      901 tcaaatgaaa ctttggaata actccgataa tattacgatc caatcgggga gtagttttag
      961 ttttgtcgat tccaacgaaa ggagttatct tgatgggatt agtaacatgt ggtgcaatgt
     1021 atggggacat gatagaactg aaataattga ttccatgaaa aatcagcttg atactcttcc
     1081 tcattcttca ttatttggtt tggttaacga accttctgta aaactggcga aacgccttat
     1141 aacaattgca aagggaatga gcaaggtttt ctacacagac aatggttcaa cggcgattga
     1201 agctgcatta aaaatagcaa tacaatactg gaacaataaa ggaaaaacgc agaaaaaaga
     1261 atttatttct ttaaaaaacg gttatcatgg cgatacaatt ggttgtatgt ccgtaggata
     1321 tgttgatggt tacttttccc cctacaggtc actactactc aaaacaataa aggtagattc
     1381 accaactata agacatgaaa aatttagaca acatgacatt gaacaatatg ttgataaaat
     1441 tgagaacatt ctgaagagga aatcggcaaa aatatctggc atggtgatgg aaagcggggc
     1501 tcaaatcgcg ggtggggtat acatctaccc gaacaaattt caaaaagaga tcagtgacct
     1561 ctgcaaaaaa tatgatgttc ttctaatact ggatgagata gctacaggat ttggaagact
     1621 tggtaatatg atagagtata aggcacaacg atctgaacca gacattgttt gtttcgcaaa
     1681 ggctcttaca ggtggctatt ttcccctagc agtaacgctg actacttcta aaattttcaa
     1741 cgaattcctc ggagattatt gggataagag gcagcttttt cacggacata cattcactgg
     1801 gcatcccgtt gggtgcacag ctgcactgac aaacctagct ctttatgaga aagtaaatct
     1861 tattggaaaa ataaggatca attccctggt actcgatcga cttttgaaaa gatttgcaga
     1921 attagaaatt tgttatgaca ttagaaataa aggactcctt tgtggaattg agttaagaaa
     1981 agggaacaaa cccatcaata ttattgacaa ggttccaatt ggacaatata ttgcaggaga
     2041 gtcattgaaa aagggtgtat atcttaggac tttgggaaat ttaattacaa taattccacc
     2101 attagcaata ggaaaagaag atctgacaaa gatagttgat actgaatatc agatagtaga
     2161 aaagattcaa aagaaaatca gataatatta atcaggtgat tcatctaaat catccgaatc
     2221 tggttataaa gggtagcttt tgatattcca aggtttttgg cgatcttatt acgtggaatg
     2281 ttctgagaca acattttgat cagtgtatct ttgtcaagtg tcttttttgg acgaccaata
     2341 ttttttccag acatttttgc ccttaccatt ccatcctttg tgcgttgaat caacatttcc
     2401 ctttctcttt ctgcgaccca agtcaggatg ccaagcatta gtttcctaac gctaggatca
     2461 gtggtttgaa gaaatagttc ttttggtgag caagatatca gtggggaata ttcttcaatt
     2521 gattttattg catcaagtgt ttcccaaaat gttcttccga ctcgtgataa ttcataaact
     2581 atgaccgagt caacacgatc agacctaacc agatttagca tctctctgaa agcaggtcta
     2641 tttattgcag ggatctttcc gcttactgca gaatcttcga aaaaatcaag aattttaaag
     2701 tcattgtcag ctgcccactt ttcgattgcc aacctctgat taagtattgt ctgttctgca
     2761 gtactgactc gcaggtatcc aaaggaatat ttcattacat attacttgat gaaaacttga
     2821 taatacttta ggtcaaaaaa aatacgtaca ggtgaaaaaa ggtatcacat tatttagact
     2881 aaatacgagt aaaaaaatgc cagtcttttt agatgatgca aaaacgggtc cttttttaga
     2941 ctgttgtagt ctaaagatga aatgacgaat ttcgcatttc ttccccacta tcaagattgc
     3001 caagaaatct ttcaattttg ttgattttca cttgttttat gtggggtaaa agctcaaaaa
     3061 cacctaataa cgctagttat ttttgccatt atctcctaat atcctaatgt ttgaatacta
     3121 acattgtttt gagattcgga gttggaccga tagaaattcg cttagaaaat gcagaaactc
     3181 ataactatcc ttatacatca atgcgaagca ccttttaagt ctcctagttc cgattctaaa
     3241 aaatctattg gtatgtaatg tatgaacttg tctccggtca gataattaaa gaataagtat
     3301 gggttctaaa aaagaactaa tgatgcagga tttcgagttc attgattctt gtatgaagat
     3361 ggtcattaat ggaaatagta tttcctttga tgaagcagaa agattaattt caactaataa
//
LOCUS       DASUMD010000084         6223 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1234181, whole genome shotgun sequence.
ACCESSION   DASUMD010000084 DASUMD010000000
VERSION     DASUMD010000084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6223)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6223)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6223
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1234181"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            73..1299
                     /gene="thrC"
                     /locus_tag="VFX26_02190"
     CDS             73..1299
                     /gene="thrC"
                     /locus_tag="VFX26_02190"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEX5573317.1"
                     /translation="MGSIRFLKCRECGAEYTPVFKYICEECFGPLDVIYNVPTDLSKH
                     TFSSRQDKTYWRYFELLPIADKNCIVNIHAGFTPLQHAEGLGTQIGNLKNLFIKNDSV
                     NPTFSFKDRPAGVAISKSREIKLKAVGCASTGNLASATAAHAAKAHLPCFIFAPSDIE
                     KAKIAQALSYGAKYVAVEGTYDDANRVASIIGDSKGIGIVNINMRPYYVEGSKTLAFE
                     VAEQLNWELPDHLIIPVGSGAMLNAICKGFEELHEIGLVDDVSNLKVTAAQPHGCAPI
                     VDAFKKNTGEIVPVERPDTIAKSLAIGDPGDGVYVLRRLKQYGGIAEEANDNEIVEGI
                     MTLAKTEGIFTEPAGGVSIAVLKKLVDDGFIERDEKVVCYVTGNGLKSIEAIVSALPK
                     LDVVKPDIQTVSAMIS"
     gene            1317..2663
                     /locus_tag="VFX26_02195"
     CDS             1317..2663
                     /locus_tag="VFX26_02195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HEX5573318.1"
                     /translation="MTNIEFIIPSVLTKGSGEKKIPLDAIDLQDAFTKVTEQLGEDFK
                     RKVLDLNGKPRSLINIYINGKNMRFSNDGMATKLNSGDSIYILPAVAGGSELKNEDLQ
                     RYSRQIMLDEIGFVGLEKLRKAKVCVVGVGGIGNPVVTQLTAMGVGKLKIVDRDIIEI
                     SNLHRQHLYTENDIGRVKVEAAKERLEKINSSVEIEALPNSVTKYTAESIVDGFDIVV
                     DALDSIDARYALNDACIKLNIPLIYAGALGMLGSICTIIPNKTACLRCIFPALAEDDM
                     PTCSTEGVHPSILYLVGGIQVSEAVKIIMGEKPTLENKLLYVDLNDLSLEKVSVFRQE
                     ECPSCGTKRIDTNQLETKQLIIEELCGRDRGKRTYTVTPAHISTSLNLIGIERTAEKL
                     GYTIKTKGELGLTIMSSNSDNLSISFMTSGAATIVGAKSEDEALSIYKSIVDDIVS"
     gene            complement(2704..3111)
                     /locus_tag="VFX26_02200"
     CDS             complement(2704..3111)
                     /locus_tag="VFX26_02200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573319.1"
                     /translation="MAIDYEFIYTFSEELLNLDSSLRWIGISNKYGVLINVEQREGLK
                     PLMSEEESEEYAAAAVSRYRTRVKFQSKIGKLDYAVGRYENVTRITIPISNDYFLLLT
                     IDKEKNYDDLINKMIIPFIDKNRNKFHFENLND"
     gene            complement(3199..4743)
                     /gene="tgtA"
                     /locus_tag="VFX26_02205"
     CDS             complement(3199..4743)
                     /gene="tgtA"
                     /locus_tag="VFX26_02205"
                     /EC_number="2.4.2.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016763 - pentosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(15) transglycosylase TgtA"
                     /protein_id="HEX5573320.1"
                     /translation="MLFEVRYSDLAGRIGKIKTPSGTFETPAFIPVIHPVSQSVDIEF
                     LKKLGFEAVITNAYITLKQYGDVARERGIHKIINFDGPIMTDSGGYQVLEYGSIEPEP
                     SYIAHFENDIQSDICVPLDKPTGYGLSYEVAERYVNETMKNSQETLNLMKSNNNRNSV
                     WVGPVQGAEHLDLVKRSAGLLDEMGYEMMALGSPVQLLESYEFAILADMIATLKTTVM
                     SKPIHLFGAGHPLTIPLAVALGCDTFDSASYMLYARDSRYMHPNGTSRLDKLTYLSCQ
                     CPICISMTVKEFVGLEHNEKIDKLAKHNLYVLRSEVLSVKQAIMEGRLWEYVGQKAQA
                     HPKLMEAFKLFVNYKHLEDGTPVFKKKAIFFMESIDQYRPEACRVRKIFSSFSTDKKK
                     IILFPDTQVSPFYCSHEYHKLSSKFSDSQICAYNPFIGIIPSEISDVYPAAHNLISRK
                     KFDFNNAKDYPTFVSSLENFLLHNFFDEVIVVANDFMQGIIKDIHILSKNLKIIEYND
                     NVIEQL"
     gene            complement(4746..5159)
                     /locus_tag="VFX26_02210"
     CDS             complement(4746..5159)
                     /locus_tag="VFX26_02210"
                     /inference="COORDINATES: protein motif:HMM:NF026244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lsm family RNA-binding protein"
                     /protein_id="HEX5573321.1"
                     /translation="MSALTIRKFYEEILQFVGKKVLIETSYDKNYSGTLSAIDERLDT
                     VLENVEGQGILRIIINGSFVKEIKLLEKPFDLKGLADRLSRVFPGLVKIRDDVKAIIV
                     MDKIKVTEYGIEEGSGLAADRVKSIYEEFMREFKK"
     gene            complement(5277..5636)
                     /locus_tag="VFX26_02215"
     CDS             complement(5277..5636)
                     /locus_tag="VFX26_02215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573322.1"
                     /translation="MSKTETKELEWYFRDLLFRNYNKGIIHLAIENIPSNMIEIYLRY
                     RNAEVGHISSILEIVLENLISSKFIDRRDNLVCIRDGISRLQCNKCYYICYLGNLEAK
                     VCLRCQSNELGTFPKKS"
     gene            5745..>6223
                     /locus_tag="VFX26_02220"
     CDS             5745..>6223
                     /locus_tag="VFX26_02220"
                     /inference="COORDINATES: protein motif:HMM:NF024724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEX5573323.1"
                     /translation="MQWNMNNFTKVAFTRLIQPFGDNPNDVVKITKAFSFAANVYSGL
                     FRNESHEPYINHAMKVALILSDELKVHDVDTICAAILHDAIDKSKDDNAIVEDLRSNF
                     GENIYDTIRILTEPKTNEENREKLLVKYFENISKGPKMSRFIKLADRLDNARFLKND"
BASE COUNT         2056 a         1107 c         1122 g         1938 t
ORIGIN      
        1 aaaaaattaa gtaatactaa aattactatt agtgatattt attaccacat attcggtgat
       61 agttgattat acatgggttc tattcgattt ctaaaatgca gagaatgtgg cgctgaatat
      121 acccccgtat tcaagtacat atgtgaagag tgtttcggtc ctctcgatgt tatatataat
      181 gttcctacgg atttaagcaa gcacactttc tcgtcccggc aagataaaac atattggcgc
      241 tatttcgaac tcttgccaat tgctgataag aactgtatcg tgaatattca tgctggattc
      301 acacccctgc aacatgctga gggattgggg acacagatag gaaatcttaa gaatctcttc
      361 ataaagaacg attctgtaaa cccaactttt tcattcaaag atagacctgc gggtgtggcc
      421 atttcaaagt ctagagaaat taaactcaaa gcagtaggat gcgcatcaac tggaaatttg
      481 gcttcagcaa ctgctgcgca tgctgctaaa gcacatttgc catgttttat ttttgcacca
      541 tcggatattg aaaaagcaaa gattgcacag gcattatctt atggtgccaa atatgttgca
      601 gttgaaggga cttatgacga tgccaatagg gtcgcgtcaa taataggaga ttcaaagggc
      661 atagggattg taaatattaa tatgagacca tattacgtgg aaggttcgaa gacgttggca
      721 tttgaagtag ccgaacaact taactgggaa cttccagatc atctcattat tccagtaggg
      781 agcggtgcga tgttaaatgc aatttgtaaa ggatttgaag agttacatga aataggactt
      841 gtcgacgacg tttcaaatct aaaggttaca gccgcacaac cacacggttg cgctccaata
      901 gttgatgctt ttaagaaaaa tactggtgaa attgttcctg tagaaagacc ggataccata
      961 gcaaagagtt tagcaatcgg ggatcctggg gacggcgttt atgttttaag aagattgaaa
     1021 caatacggtg gtattgctga agaagctaat gataatgaaa ttgttgaggg aattatgaca
     1081 ctagcaaaaa ctgaaggtat ttttactgaa cctgcaggtg gcgtctcaat agccgtactc
     1141 aaaaaactgg ttgatgatgg atttatagag cgagatgaaa aagtagtatg ttatgttacg
     1201 ggtaatggat tgaaatctat tgaagcgata gtaagtgcat tgcccaaact tgacgtcgtc
     1261 aaaccagata tacaaacagt gtcagcaatg atttcatagg aaatgatgag cacagaatga
     1321 caaatatcga atttataatt ccatcagttc ttacgaaggg tagcggagaa aaaaagattc
     1381 cattagacgc catagatctg caagatgcgt ttaccaaagt aacagaacag ctcggggaag
     1441 attttaaacg taaagttttg gatttaaacg gaaaaccgcg atcgttaatt aacatttaca
     1501 ttaacggaaa aaacatgcgt tttagtaatg atggcatggc aaccaaactt aacagtggtg
     1561 actccattta tattctaccg gctgtagcag gaggttctga actaaagaac gaggatttac
     1621 aacgatactc cagacagata atgctagatg aaataggatt cgttggattg gaaaaactta
     1681 gaaaggcaaa agtatgcgtt gttggagttg gaggtatcgg caatcctgta gttacacaac
     1741 tgactgcaat gggtgtcgga aaattgaaga tagtggatag agatatcata gaaatttcca
     1801 acttgcatag gcagcatctt tatacagaaa atgatatagg tagagtaaag gttgaagctg
     1861 caaaagaaag acttgagaaa ataaattcaa gtgtcgagat tgaagcgctt ccaaattctg
     1921 ttactaaata tactgctgaa agcattgttg atggatttga tatagtcgtg gatgcattag
     1981 acagtataga tgctagatat gcactaaatg acgcatgtat taaactaaat atccctctaa
     2041 tctatgctgg tgctttaggc atgttaggtt caatttgcac aataattcca aataaaaccg
     2101 catgtcttag gtgtatcttt cccgctttag ctgaggatga tatgcctact tgtagtactg
     2161 aaggtgttca tccatcaatt ttgtatcttg tcggaggtat ccaagtttct gaggcagtca
     2221 agatcattat gggtgaaaaa ccaacactag aaaataaact gctatatgta gatctaaacg
     2281 atctatcatt agaaaaggtt tcagtgttta gacaagaaga atgtccttca tgtggaacaa
     2341 aaagaattga tactaatcag ctggaaacaa agcaattgat aattgaagaa ctatgcggtc
     2401 gtgacagagg aaagagaaca tacactgtta cgcccgcaca tatatcaaca tcactaaacc
     2461 tgataggaat tgaaaggact gcagaaaaac tgggatatac gattaagaca aaaggcgaac
     2521 taggattaac catcatgagc agcaattccg acaatctttc aataagcttc atgaccagtg
     2581 gggcagctac tattgttgga gctaaaagtg aggacgaagc actgtcaatt tacaagagca
     2641 ttgtggatga catcgtatct taattttcaa taatatttat ggcaaagtgc agcggaaata
     2701 ggatcaatca tttagatttt caaaatgaaa tttgttccta tttttatcga taaatggaat
     2761 tatcatctta ttaatcaagt catcataatt tttctcttta tcgattgtta ggaggagaaa
     2821 atagtcgtta ctaatgggaa tagtaatcct agttacattt tcatatcttc caacagcata
     2881 atctagtttt cctatttttg attgaaattt gaccctagtc ctatatcttg acacggctgc
     2941 agctgcatat tcctcgcttt cctcctctga cattaatggt tttaatcctt cgcgttgttc
     3001 cacattaatt aggacgccat atttatttga aataccaatc caccgaagag aactgtctaa
     3061 atttaataat tcctcactaa acgtataaat gaactcataa tcaatcgcca attttattaa
     3121 ttatcttaac tatttcttat atttaagcaa aatttaagat taaaaacgag attagcgcga
     3181 tttagagtta gcagatgatt aaagttgttc aattacatta tcgttatatt caataatctt
     3241 tagattctta gaaagaatat ggatgtcctt aattatgcct tgcatgaaat cattggcaac
     3301 gactatcacc tcatcaaaaa aattgtgtaa cagaaaattt tctaaagaac taacaaaagt
     3361 tggatagtct ttagcattat tgaaatcaaa ttttttcctt gaaatcaggt tatgagcggc
     3421 aggatagaca tctgaaattt cagatggaat gataccaata aaaggattat aagcacaaat
     3481 ctgagaatct gaaaatttac ttgacaattt gtgatactca tgagaacaat aaaagggaga
     3541 aacctgtgtg tcaggaaata gaatgatctt tttcttatcc gtactaaatg aactaaagat
     3601 ctttcttact ctacaagctt ctggtcgata ttgatcgatt gattccataa aaaatatcgc
     3661 ttttttcttg aacactggcg taccatcttc taagtgtttg taattgacaa ataatttaaa
     3721 ggcctccatt aatttgggat gagcttgtgc cttttgtcca acatattccc aaagtcttcc
     3781 ttccatgata gcttgtttta ccgacaaaac ttctgatctc agtacgtaga gattatgctt
     3841 ggccaattta tctatctttt cattgtgttc gagtccaaca aattccttaa ctgtcatact
     3901 aatgcaaatc ggacactgac atgaaagata tgtcaactta tccaatcttg aagttccatt
     3961 tggatgcatg tacctgctat ctcttgcata caacatgtat gaagcagaat caaaagtatc
     4021 acaccctaat gctactgcca atggtatcgt taaaggatgt cctgccccga agagatgaat
     4081 gggcttagac ataactgttg ttttaagagt tgctatcata tcagccaaaa ttgcaaattc
     4141 gtatgattct agtaattgca caggacttcc aagagccatc atttcatatc ccatttcatc
     4201 aagtaatccc gcggatcttt ttaccaagtc aagatgttct gctccctgga ctgggcccac
     4261 ccaaacagag tttcgattat tgttactctt catgagattt agggtttctt gggaattttt
     4321 catagtctcg ttaacatacc tttcagctac ttcataactc aacccatatc ctgttggctt
     4381 gtcaagaggt acacaaatat cactttgaat atcattctca aaatgggcta tatacgaagg
     4441 ctctggttca atagaaccgt attctagcac ttggtagcca ccagaatctg tcattattgg
     4501 accatcaaaa tttattattt tatgaatacc tctttctcgt gcgacatcac catattgttt
     4561 tagcgtgata tacgcatttg taatgactgc ttcaaagcct aatttcttta aaaactcgat
     4621 atctacagac tgggaaaccg ggtgaataac aggtataaag gcaggggtct caaaagtccc
     4681 actaggagtc tttatttttc ctatccttcc tgctaggtca gaatacctga cctcaaataa
     4741 caaatttact tcttgaactc cctcatgaat tcttcatata ttgactttac cctatcagca
     4801 gctaacccag aaccttcttc tatcccatat tcggttacct tgatcttatc catcacaatt
     4861 atcgctttga cgtcatctct gatttttacg agccctggaa atactctcga tagacgatct
     4921 gcaagaccct taagatcaaa aggcttttcc aaaagcttta tttctttcac aaatgatccg
     4981 tttatgataa ttctcagaat tccctgacct tctacatttt cgagaacagt gtctaatctt
     5041 tcgtcgattg cacttaacgt tccactataa ttcttgtcat aagatgtctc tatcaaaact
     5101 ttttttccta cgaattgaag tatttcttca taaaacttcc ttatggttaa agcagacatt
     5161 ttttcaacta ggaatgtttc ctaaagttct atatatgagt ttcaataact aactcgacta
     5221 aacacaggtc aatctttctg tttcacatta tctaattcaa acaaggatag tcaggatcaa
     5281 cttttttttg gaaacgtacc taattcgtta ctttgacacc ttaaacagac ttttgcttct
     5341 agatttccaa gatagcaaat gtaatagcat ttattacatt gcaagcgaga gatcccatcc
     5401 ctaatacata caagattatc ccgacgatct ataaatttgg acgaaattag attttccagt
     5461 actatttcta aaattgaaga aatatgccct acttctgcat ttctatatct gagataaatt
     5521 tcaatcatat tacttgggat attttcaatt gcaagatgta ttatcccttt gttatagttt
     5581 ctaaataaca gatctctgaa ataccactcc agttccttcg tttcagtttt actcatcttc
     5641 cgtaaatgta gaaataccag aataataagt atggaataga ttcacataca gaaaacttga
     5701 gaaactattt aaaaatactt gattggttaa ctatttgagt caaaatgcaa tggaatatga
     5761 ataattttac aaaggtagct tttaccaggt taattcaacc gtttggagat aaccctaatg
     5821 acgttgtgaa gattacgaag gcctttagtt ttgctgctaa tgtatattcc ggactatttc
     5881 gaaatgaaag tcatgaacct tacatcaatc atgcaatgaa ggttgcattg atattatctg
     5941 atgaattaaa agttcatgac gtagatacaa tctgcgcagc aattctacat gatgcaatag
     6001 acaagagcaa agacgataat gccattgttg aagacttgag atcaaacttc ggtgaaaata
     6061 tttatgatac tattaggatc ttgaccgaac caaaaactaa tgaagaaaat agagaaaaat
     6121 tacttgtcaa atattttgaa aatatttcaa aaggtccaaa aatgtctcga ttcataaaac
     6181 ttgctgatcg tttggacaac gcccggtttt tgaaaaatga cag
//
LOCUS       DASUMD010000085         6584 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_572222, whole genome shotgun sequence.
ACCESSION   DASUMD010000085 DASUMD010000000
VERSION     DASUMD010000085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6584)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6584)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6584
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_572222"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..333
                     /gene="rpsK"
                     /locus_tag="VFX26_02225"
     CDS             <1..333
                     /gene="rpsK"
                     /locus_tag="VFX26_02225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HEX5573324.1"
                     /translation="VHITDISGAETIAFSSGGRHVTADRYESSPYAAMKSAVAAADMA
                     KTKGINALHIRVRAVGGVGPRIPGPGAQAAIRALARAGFRIGRIDDVTPIPHDTTRKP
                     GGRRGRRV"
     gene            complement(380..1390)
                     /gene="thiL"
                     /locus_tag="VFX26_02230"
     CDS             complement(380..1390)
                     /gene="thiL"
                     /locus_tag="VFX26_02230"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR01379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009030 - thiamine-phosphate kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HEX5573325.1"
                     /translation="MKRLNEREIIDLFTSYINDPLLDKVKGDDVVIVPLKYGMIKRMN
                     KTGRINIVLKSDMLIESTDVPGIMRPWQIARKSIIACVSDFAAKGIRPYACLISIGIP
                     RRYSKKNIISLATGFTLASKEYKVHILGGDTNESKELTIDCNMMGITTLPDSKIPSRE
                     GAKVGDLIVTSGKFGYTSAGLKIILSHLNAEKKFRTKSISSVTSPKPQVEFGFVLAKY
                     FSSSIDSSDGLSSSLYELAQKSKVDFLINKIPTPKDLTHFAKLNSINTEDLLFFGGEE
                     YETIATVPRLDFKKLIKVARKHRIKVYHIGEVTRGSGNVFYELKGIQKLVKNQGFVHF
                     AK"
     gene            complement(1374..2714)
                     /locus_tag="VFX26_02235"
     CDS             complement(1374..2714)
                     /locus_tag="VFX26_02235"
                     /inference="COORDINATES: protein motif:HMM:NF014877.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573326.1"
                     /translation="MKISISGIRGIFNQDLDLNNIINFSRLFASFIINDSINSEKKCL
                     VARDTRPSSDIILRTVSAAIMEKGIDVFDLGVAPTPFVFRESIKYGNAIIVTASHNPL
                     EWNGLKFVINGRGMFEEELDSIQQQDATSSTGFGKSYHINPEYILDILEFMRKNRYLD
                     DGGKRRNTVGLDPGGGAISSFIPKLYDSMNQDFLSINDIAGISSRSPDPTTDDLFELR
                     KLVLSKKLDLGFAFDMDADRLVVVDRNGNKLSTDLTLLLCIASTLYHGAKKFVVSIDT
                     SNAIEHMVTDHGGTLNYSKVGEANVVKQLLNLKADAGGEGSSAGFIMPKFNMCRDGIL
                     ASVIISSLNEDLYNDCIEIASNYSTIRSKVPIESNFQQTVIEKFEQKFKAKSFHIIKK
                     DGTKILMDDKSWILLRSSNTEHAVRISVESSPDNVLSIFNDAKKKVQSIYEEIK"
     gene            2859..2931
                     /locus_tag="VFX26_02240"
     tRNA            2859..2931
                     /locus_tag="VFX26_02240"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2892..2894,aa:Thr,seq:cgt)
     gene            2990..3700
                     /locus_tag="VFX26_02245"
     CDS             2990..3700
                     /locus_tag="VFX26_02245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ERCC4 domain-containing protein"
                     /protein_id="HEX5573327.1"
                     /translation="MRIVVDRRERNSGIPELLRQSGVFVDFATLKVGDYIVFNNVAIE
                     RKTISDLLSSFYDGRLFIQCSQLVKHFSSPLLIVEGDIIEDLKTESEKTFRSYDQKIQ
                     LVYDSLITVVLDFKIPLVHTPNIEHTTSFLIAIANKLSRKYSYGPLLRKIRKQTSEQI
                     QQLSVLSSLPGVGGMFAVKMLKEFNTPKRALNASAAELAKIPGFGTARAQRIRKILDN
                     AYNDVDEENQKTLLEHLK"
     gene            complement(3993..4661)
                     /locus_tag="VFX26_02250"
     CDS             complement(3993..4661)
                     /locus_tag="VFX26_02250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proteasome subunit beta"
                     /protein_id="HEX5573328.1"
                     /translation="MFQHDNKNYEEYVMNHIKKGTTTCALTCKDGVVLAADTRASAGY
                     FIVDRNVMKIQKIDEHLGMTIAGGVADAQNLVDLLRYNANLYRLSNRERLIPVKSAAR
                     LCSNVLFNQRYYPYYVQIIMAGFDKNGEGSQIYNIDLFGSMTSERFISTGSGSPVAYG
                     YLESEYKKDLGVNEAYKIAIQAIAAAIRRNSGTGDSINAVIIDKDGYRDLSKEVKDAV
                     QAVY"
     gene            4781..6205
                     /gene="leuC"
                     /locus_tag="VFX26_02255"
     CDS             4781..6205
                     /gene="leuC"
                     /locus_tag="VFX26_02255"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HEX5573329.1"
                     /translation="MQQTLFDKIWDSHVVIDNAGDSSGPSLIYVDRHLIHEVTSPQAF
                     AGLKQRGRKVRRPNLTIATTDHNVSTESRSLPIVDEVSKTQLETLSRNCKEFGIAIYD
                     MTSPDQGIVHVIGPELGFTLPGTTIVCGDSHTSTHGAFGALAFGIGTSEVEHVLATQC
                     LWMYKPKSFLINIEGNLKKRHAITSKDIILNIIRKIGTDGGTGTVIEYRGDVISALSM
                     EQRMTICNMSIEGGARAGLIAPDETTFNYLRGRRYAPKESELDKLIDFWRINLKSDAN
                     VKFDRVETINVDELAPQITWGTNPSMVVDITDSIPSPDQFAKGDQNRRKLAIRALEYM
                     NLEPGTPMTDVHIDRVFIGSCTNSRLEDLIEASLVIKGRKVSRKVRAMIVPGSQKVKL
                     EAEELGLDKIFKDSGFEWRESGCSMCLGMNPDILLPGERCASTSNRNFEGRQGAGGRT
                     HLVSPIMAAACAIEGHFVDVRDWL"
     gene            6219..>6584
                     /gene="leuD"
                     /locus_tag="VFX26_02260"
     CDS             6219..>6584
                     /gene="leuD"
                     /locus_tag="VFX26_02260"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HEX5573330.1"
                     /translation="MEPFQDVKSKLIPLDMMNVDTDQIIPKQFLKLIQKTGYGDFLFY
                     DWRFDHGGNPKNGFILNDPKYNERQVLLTRENFGCGSSREHAVWALFDYGIRVVIASS
                     FADIFYNNCFKKGLLPIYLS"
BASE COUNT         2074 a         1173 c         1181 g         2156 t
ORIGIN      
        1 gttcatataa cagatattag tggcgctgaa acgatcgctt ttagttctgg gggaaggcat
       61 gtaacagctg acagatatga atcgtctcca tatgccgcaa tgaaatctgc tgttgcagca
      121 gcggatatgg caaagaccaa aggtatcaat gcattacata ttagagtaag agcagttggc
      181 ggtgtgggac cgcgtattcc tggacctggt gctcaggctg cgataagggc acttgcaaga
      241 gctggtttta gaataggcag aatcgatgat gtgactccaa taccccatga tacaactagg
      301 aaaccaggcg gacgtagagg aagaagagta taatcatctc tctattcttt aaaaggacta
      361 ccaattaaag tatgaaatat tattttgcaa agtgcacgaa tccttgattc ttaacaagct
      421 tttgaattcc ttttaattcg tagaatacat ttccgctgcc ccttgttact tcgccgatat
      481 gatacacctt gattctgtgt tttctggcca ctttaatcaa tttcttaaaa tctaatctcg
      541 gaactgttgc aattgtttcg tattcttctc caccaaaaaa aagtagatct tcggtattaa
      601 ttgaattcaa tttagcaaag tgagtcaagt cctttggggt tggaattttg ttgatgagga
      661 aatctacttt gcttttttga gcaagctcgt acaatgaaga agacaggcca tcactagaat
      721 ctattgagga tgaaaaatat tttgcaagta caaatccaaa ttccacttgc ggtttgggag
      781 atgttactga tgatattgat tttgttctaa attttttttc agcattcaaa tgtgatagga
      841 taattttcaa tcctgcagag gtatatccaa attttccaga tgttactatc aaatctccaa
      901 cctttgcacc ctctctactg ggaattttgc tatccggtaa agttgtaatt cccatcatat
      961 tgcaatcaat cgtcaattct ttagattcat tggtatctcc tcccaagatg tgtactttat
     1021 actcctttga tgctagtgta aatccagttg caagagaaat tatatttttt tttgaatacc
     1081 tccttggtat tcctatggaa ataagacatg cgtatggcct tataccttta gcagcaaagt
     1141 cacttacgca tgctattata ctctttcttg ctatttgcca aggtctcata attccgggta
     1201 catctgtact ttcaattaac atatcactct ttaacacaat gtttatcctg cctgttttgt
     1261 tcatcctctt tatcatgcca tatttgagtg gcacaattac tacgtcatct ccctttacct
     1321 tatctagtaa gggatcgtta atataagaag taaagagatc tataatttct ctttcattta
     1381 atctcttcat aaatagattg tacctttttc ttagcgtcat taaaaataga taatacatta
     1441 tctggagatg attctactga aattctaact gcatgttctg tattagaaga tctaagcaag
     1501 atccaagatt tatcatccat taatattttc gtaccatcct tttttattat atgaaaagat
     1561 tttgccttaa atttttgttc gaatttttca atcactgttt gctgaaaatt tgattctatt
     1621 ggaacttttg atctaattgt tgagtaattt gaagcaattt ctatacaatc gttatagaga
     1681 tcttcattta atgaggaaat gattacgctg gctaatatgc catctctaca catattaaat
     1741 tttggcatga taaatcctgc actacttccc tcaccccccg catctgcttt caagttgagc
     1801 aattgtttca ctacattagc ttctccaact tttgaatagt tcaaagttcc gccatgatca
     1861 gtaaccatgt gttcaatagc attacttgta tctatgctga ctacaaattt ttttgctccg
     1921 tgatacaatg tacttgcaat acataacaaa agtgtaagat ctgttgagag tttgttccca
     1981 tttctatcta cgaccacaag cctgtcagca tccatgtcaa atgcaaaacc taaatctagc
     2041 tttttggata aaacaagctt cctcaattca aaaagatcat cagtcgtagg atcaggtgat
     2101 cttgaggaaa tgccagcaat gtcatttatt gacaagaaat cctgattcat tgaatcgtat
     2161 agctttggaa taaatgaaga tatagctcct cctccgggat ctaagccaac tgtatttctt
     2221 ctttttccac catcatcaag atatctattc tttctcataa attcaagaat atcaagtata
     2281 tattctggat ttatgtgata tgatttccca aatcctgtac tagatgtagc atcttgttgt
     2341 tgaattgaat caagttcctc ttcgaacatt cctcttccat taattacaaa ttttaaaccg
     2401 ttccactcta aaggattatg tgaagctgtt actattatag cgttaccata tttaattgat
     2461 tcacgaaata caaagggtgt tggagctaca cctaaatcaa agacatcgat ccctttttcc
     2521 ataatggccg ctgatactgt ccgaagaatt atatcacttg aaggtctggt atctcttgcc
     2581 accaaacatt tcttttcaga attaatggaa tcattaataa taaaagaagc aaacaatctg
     2641 gaaaaattta tgatattatt taaatcaaga tcttgattaa agatgcctct aataccagaa
     2701 attgaaattt tcactttaga aaaacttgaa ttttcaacta tttaatcttg ttttataacc
     2761 aagtctagat gaattcgata atcatttgta agtaaattat catcgaatta gaaaatagtt
     2821 aaattggttg tatggttgca aatgtatcca tgacataggc ctctatagct cagttggtag
     2881 agcgaaggtt tcgtaaacct taggtcgtgg gttcgagtcc cactagaggc tctaatttaa
     2941 catcaatatt tttaaaactt tggtacaata ttttcttggt agatgcaatt tgagaatagt
     3001 agtcgataga agagaaagaa acagtggcat tccagaattg ctcaggcaat caggtgtttt
     3061 tgtagatttt gctactttga aggttggtga ctatatcgtt tttaataatg tagcgattga
     3121 aagaaaaaca atatccgatc ttttaagttc cttttatgat ggaagattat tcattcagtg
     3181 ttcgcaactc gtaaaacatt tctcatcacc tctattaatt gttgaagggg atataataga
     3241 ggatctgaaa actgaatctg aaaaaacttt ccgtagctat gatcaaaaaa ttcaactagt
     3301 ttatgattca ttaattacag ttgttttgga tttcaagata cctttagttc atacgccaaa
     3361 tatagaacat accacgagct ttctcatcgc aattgccaac aagttatcta gaaaatattc
     3421 atatggacca cttttacgaa aaatcagaaa gcagacctcc gaacaaatac aacaactatc
     3481 tgttctttct tcattgcctg gagttggtgg tatgtttgct gtgaaaatgt taaaggaatt
     3541 taacactcca aaaagagcat taaatgcttc agctgctgaa ttggccaaaa ttcctggatt
     3601 tggaactgca cgtgcccaaa gaatacgaaa aatactggat aatgcatata atgatgttga
     3661 tgaagaaaat cagaaaacat tgctagaaca tctcaagtag ttatttcaga ttacccttac
     3721 tctttaattc atccaatatg cgcattagtg tgtcgtagtc tatcttcaag ctatttaaaa
     3781 tggtcaaatg atctattttt ttactttttc taataaacct ctcaacctct cctttgattt
     3841 tttgatattt cctatcttgt gtattaatca atttgtaatt aattgctgag ctcttgtttg
     3901 aattggcagt tctagatgat tagttaattt acgcattcat tcaacaataa cagcagttcg
     3961 gctaaattga taaaaaagga gatttggagg tatcagtata ctgcctgaac tgcgtccttt
     4021 acttccttgg acagatctct atatccatct ttatctataa taacagcatt tatgctatca
     4081 ccagttccag aattccttct gatagcagct gcaattgctt gtatagctat cttgtatgct
     4141 tcatttacac cgagatcttt tttatattct gattctagat aaccgtatgc aacgggagaa
     4201 ccgctaccag ttgagataaa tctttcactg gtcatagatc cgaacaaatc aatattgtat
     4261 atttgtgaac cttcaccatt tttatcaaat cctgccataa tgatctgtac gtaataagga
     4321 tagtatcttt ggttgaacag aacattagaa cagagtcttg cggcagattt tacaggaatt
     4381 agtcgttctc tatttgacaa tctatacaaa tttgcattgt agcgcaaaag atcaaccaag
     4441 ttttgagcat cagcgacacc tccagcaatt gtcatgccta aatgttcgtc tatcttttga
     4501 attttcataa catttctgtc tacaataaag taacctgcgc tagctctagt atctgcagct
     4561 agtacaactc catctttgca tgtcaatgca caggtagtcg ttcctttctt tatatgattc
     4621 ataacgtatt cttcatagtt cttattgtca tgctgaaaca ttgaaattaa tttctgtgaa
     4681 tactagattt aagcattatc acttagtata caatcgcttt caaaaaatgg ttgcaattag
     4741 taatatgatt atattccgat ttaactaaca atacataata ttgcaacaaa ccctctttga
     4801 caagatctgg gatagtcatg tagttataga taatgcaggc gattctagtg gcccttcgtt
     4861 aatttatgtt gataggcact tgatacatga agttacatct ccccaagctt ttgctggtct
     4921 aaagcagaga ggcaggaaag ttaggcgacc taatttaaca atagcaacaa cagatcataa
     4981 tgtttcgacc gaaagcagat cactccctat tgtcgatgag gtatcaaaga cgcaacttga
     5041 aacgctaagc cgaaattgca aagaatttgg aatagctatc tatgacatga ccagcccgga
     5101 tcagggcata gttcatgtaa ttggaccaga gcttggtttc acactccctg gcactaccat
     5161 agtttgtggt gacagtcata cgtcgacgca tggtgcattt ggggccctag cttttggaat
     5221 aggaacgagt gaggtcgaac atgttcttgc tactcagtgc ttatggatgt acaagccaaa
     5281 atcattccta atcaatattg aggggaatct aaaaaaacgc catgctataa catccaagga
     5341 cataatactc aacattattc gtaaaatagg aaccgatgga ggtactggaa ctgttatcga
     5401 atacagggga gatgtaattt ctgcattatc aatggaacag cgaatgacta tatgcaatat
     5461 gtctatcgaa ggcggagcga gagcagggtt aattgcccct gacgaaacta catttaacta
     5521 tttgcgagga agaaggtacg ctcccaaaga atcagaactg gataaattga tagacttttg
     5581 gagaatcaac ttaaaaagcg atgcaaatgt aaaatttgat agagttgaaa caattaatgt
     5641 tgacgaactt gcccctcaga taacttgggg tacaaaccca tccatggtcg ttgacataac
     5701 agactccata ccttcacctg accaatttgc aaaaggtgat caaaatagga ggaaattagc
     5761 tatcagagct ttggaataca tgaacttaga accaggtacg ccaatgactg atgttcatat
     5821 tgatagagtg ttcataggct catgtacaaa ttcacgatta gaagatctaa tcgaagcgtc
     5881 acttgttatt aaagggagga aggtatcgag aaaagtgagg gcgatgatag ttccaggatc
     5941 ccaaaaggta aaattagaag ctgaggaact tggtttggat aagattttta aagattcagg
     6001 atttgaatgg agagaatcag gttgcagtat gtgtcttgga atgaatccag atatattatt
     6061 accaggggag cgatgtgcaa gcacttctaa tagaaatttt gaaggcaggc agggagctgg
     6121 tggaagaact catctagtaa gtccaataat ggctgccgca tgtgctatag aagggcactt
     6181 tgttgatgta agagactggt tataatctgg tgatatgaat ggagcctttt caagacgtta
     6241 aaagtaaact aattccgtta gacatgatga atgtggatac cgatcagata atacctaaac
     6301 aatttctcaa acttatccaa aaaactggat atggagactt tcttttttat gattggcgtt
     6361 ttgatcatgg tggaaatccg aagaatggat ttattctcaa tgacccaaaa tataatgaaa
     6421 gacaagtatt attgacaaga gaaaactttg gatgcggaag ttctagagaa catgcagttt
     6481 gggcattatt tgattatgga attagggttg taattgcttc ctcgtttgca gatatattct
     6541 acaataattg ttttaaaaaa ggattactgc cgatatactt gagt
//
LOCUS       DASUMD010000086         3025 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1015047, whole genome shotgun sequence.
ACCESSION   DASUMD010000086 DASUMD010000000
VERSION     DASUMD010000086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3025
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1015047"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..383)
                     /locus_tag="VFX26_02265"
     CDS             complement(<1..383)
                     /locus_tag="VFX26_02265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HEX5573331.1"
                     /translation="MIPKSPSQSQNVELMKKIKDGKLKIAVYGLGHVGAPLAAVWLRA
                     GAHVIGVDKSKKVLAEARKGKTTIPEPNVNEAFKHGINSGRFKLYDDQIKASQEYYFK
                     MICVPVLSQDQDLSADLSAVSEVAT"
     gene            complement(528..914)
                     /locus_tag="VFX26_02270"
     CDS             complement(528..914)
                     /locus_tag="VFX26_02270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573332.1"
                     /translation="MAGQDPNPLPYGALPYFQIHYLIEPVNVSNPSSYMAKCRAKTKG
                     HLEDKRIVDIEWVGGRLAERLASDKELTEMLKPLMMKEGEISIDPQKDRVRVYTKWKR
                     EDKLQFDPEFFQVVERIARTIKKLES"
     gene            complement(1096..1596)
                     /locus_tag="VFX26_02275"
     CDS             complement(1096..1596)
                     /locus_tag="VFX26_02275"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HEX5573333.1"
                     /translation="MKSLKYVKHVLLIISLVTISGTTIVSTQTLGMKFTASMSGDQVA
                     PPTDSSVNGTASFRTTAHDTVIKYKIKVAGSSDVTSADIHLGKTGENGEAVVDLLKDS
                     KKNGIRQGTSIRGNITSSDLKGSLEGKEVLTDLILSMKNGSTYVNIDTPYHENGEIRG
                     QIIVLR"
     gene            complement(1743..>3025)
                     /locus_tag="VFX26_02280"
     CDS             complement(1743..>3025)
                     /locus_tag="VFX26_02280"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="glycine--tRNA ligase"
                     /protein_id="HEX5573334.1"
                     /translation="DGSQIMSRSVFVASGHLDNFTDPIIKCKNCGATFRADRYITEKT
                     GREVPELLSGNEIDKIVKEFDLKCASCKGTFYESSRFNMMFKVEIGPSQEEAYLRPET
                     CQSIFVDFPRIFKTMRGRLPLAVAQVGKSFRNEIAPRQSLLRLREFYQAEIEVFCNPD
                     RLNELPKFEQVKNTTLTLFTKNTSRTISAEDAVREGYLPNKLVAYYMSLLTMFYSKTG
                     MIMERTRFRQLSDDEKAFYASTAFDFEVETSIGWLELVACNYRSDYDLKKHSEVSKQN
                     LYVIDPSDNTKVLPHLFELSMGIDRSIYSILEHSYYEDIEAKRVVLKLVPQIAPILLG
                     VFPLVTKDGLREKAQEIYTKLKLHYPTFYDESGSIGRRYRRLEEIGAPFALTIDNQTM
                     KDDTVTLRYRDSMMQERVGVSEIPAFLDARIDSK"
BASE COUNT          836 a          630 c          490 g         1069 t
ORIGIN      
        1 attgttgcta cctccgatac tgctgaaaga tcagctgata aatcttgatc ttgtgataat
       61 acagggacac aaatcatttt aaagtaatat tcttgtgacg cttttatttg atcgtcataa
      121 agtttgaatc gccctgaatt aataccatgc ttaaacgctt cgtttacgtt aggttcgggt
      181 attgtagtct tgccttttct tgcctcagct agaactttct tggatttatc aacaccaatc
      241 acatgggctc ctgctctgag ccagacagct gcaagggggg caccaacatg acccagacca
      301 taaactgcaa ttttgagctt accatccttt atctttttca ttaactctac attttggctt
      361 tgactggggg actttggtat catatgctac ctttagtatt ccttaatatg tacatattgg
      421 atttgatctt aatcacaata caggacattt tcaacttttt aaaatcagct gatttttcat
      481 gtttgcaaat aaaaatctat ttcaagataa atttgaaatg tatccctcta tgattccagt
      541 ttcttaattg ttcttgctat tctttcaacc acttgaaaga attcaggatc aaattgcagt
      601 ttatcttctc ttttccattt agtgtacacc ctaaccctat ctttttgggg atcaatactt
      661 atctcacctt ctttcatcat caacggcttt aacatctcag tgagctcctt atcagatgcc
      721 agtctttcag ccaatctacc tcctacccat tctatgtcaa cgattctttt atcttctaaa
      781 tgccctttgg tttttgctct gcactttgcc atatacgatg acgggttgga tacatttact
      841 ggctcaatca aataatgaat ctgaaaatat ggtaatgcac catatggaag aggatttggg
      901 tcttgtcctg ccataaatta gtctacgggt ttttggattc aagcatatat caatgtagtg
      961 cagttaaggt cgacttaata accgaattta gtgcccacat ttaccagctt tctaatattg
     1021 tcacaaagag ttttgtaggt ttattctaca actacacttt ttcacttaac gctagttgaa
     1081 ccgccgttgt caatgttatc tgagaactat tatctgtcct cttatctcgc cattctcatg
     1141 gtatggcgta tcgatattga cataagtgct tccatttttc attgacaaaa ttaagtcggt
     1201 cagtacttct tttccttcaa gggagccttt tagatcagaa cttgtgatgt ttcctctaat
     1261 tgatgttccc tgccttatcc cattcttctt gctgtctttc aaaagatcaa ctactgcttc
     1321 accattttct ccagtcttgc ccaaatgaat atcggcactc gttacatcag acgatcctgc
     1381 tacctttatc ttgtacttta taacagtatc atgagctgtg gttctgaatg aagcagtgcc
     1441 attgacacta gagtctgtag gaggagcaac ttggtcgcca gacattgaag cagtaaattt
     1501 catcccaagt gtttgtgttg atactatcgt cgttcctgaa atagtaacca gactaatgat
     1561 gagaagtaca tgctttacat atttgaggct cttcaaaatc attagcttgc ttgtttgtta
     1621 ttatcatttc gtcctaaaag ccttatgatc tgtgaatgac taactgcatg cgatcttgat
     1681 tcaagtatta agaaaaaata caattgaata tgatactact attttggatt aataacatca
     1741 aattattttg aatctattct tgcgtctaaa aatgcaggaa tttctgaaac tcctactctt
     1801 tcttgcatca tggagtctct atatcttaga gtaactgtat catccttcat agtttggtta
     1861 tcaatagtca gggcaaatgg agctcctatc tcttcgagtc ttctatatcg cctgcctata
     1921 gaacctgact cgtcataaaa tgttgggtaa tgcaatttta attttgtata tatctcctgt
     1981 gctttttcgc gtagtccatc tttggttaca agcggaaaaa cacctagaag tatgggagct
     2041 atttggggaa caagttttaa tacaactctc ttcgcttcaa tatcctcata ataagaatgt
     2101 tctaatatgg agtaaatact tcggtctatt cccattgaca gttcgaatag gtgtggcaga
     2161 acttttgtat tatcagatgg gtcgataaca taaagatttt gtttacttac ctcactatgt
     2221 ttttttaaat cataatcaga tctataattg caggcaacca attccagcca cccaatgcta
     2281 gtttcaactt caaaatcaaa ggccgttgat gcataaaatg ctttttcatc gtctgacaac
     2341 tgtctaaatc tagtgcgttc cataatcatg cctgtcttgc tgtaaaacat tgtaagtaga
     2401 gacatgtagt aagcaacgag tttgtttggc aaatatccct cacgcaccgc gtcttccgca
     2461 ctgattgtcc gcgatgtatt ctttgtgaat aacgtaagag ttgtattttt aacttgttca
     2521 aattttggta attcatttaa cctatccgga ttacagaaca cctcgatttc tgcctgatag
     2581 aattccctca atctcaatag actctgtctt ggtgcaatct cgttcctaaa acttttacca
     2641 acctgcgcga ctgcaagtgg aagccttcct ctcatcgtct taaaaattct cggaaaatca
     2701 acaaaaatac tctgacatgt ttctggtcta agatatgcct cttcttgaga agggccaatt
     2761 tctactttaa acatcatgtt aaatctgctt gattcataaa aagttccttt acaacttgca
     2821 catttcaaat caaattcttt tactattttg tctatttcat ttccagaaag taattctgga
     2881 acttccctgc cagttttctc agtaatgtat ctatctgccc ggaatgtggc accacaattt
     2941 ttgcacttta tgattgggtc tgtaaaattg tcaagatgac ctgaggcaac aaagacactc
     3001 ctactcatta tctgagaacc atcaa
//
LOCUS       DASUMD010000087         8032 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_130191, whole genome shotgun sequence.
ACCESSION   DASUMD010000087 DASUMD010000000
VERSION     DASUMD010000087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 8032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8032
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_130191"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1050
                     /gene="phaC"
                     /locus_tag="VFX26_02285"
     CDS             <1..1050
                     /gene="phaC"
                     /locus_tag="VFX26_02285"
                     /inference="COORDINATES: protein motif:HMM:TIGR01836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class III poly(R)-hydroxyalkanoic acid synthase
                     subunit PhaC"
                     /protein_id="HEX5573335.1"
                     /translation="NKNTQNRNLTGYSKISKTIELLSRGNHISVGDTPNDIVCETRLY
                     RLLHYHSLVKKVSPTPILVVYALVNRSYVLDLQPNKSWIRHLLAQGFDIYLLDWKSPT
                     KMDKYVSFDDYVNSYIDDCVEIVQNNNSADKITLHGYCMGSSMSAMYTSLHQEKIKNL
                     VTIAPVVDTSKDSTVIANISRQMDIDKLVSTIGYLPPEKLYECYSILKPFKQGVNKYF
                     NLIENIDNESFVQNFLRIEKWLYDTPPIAGETIKQWINDIYKNNMLFKNQFRLGKAIV
                     DLKKINVPLLNIVAEEDHLVSPECSVPLNEVVSSEDRRLIRFHTGHVGLIASSYSQNN
                     VLPKVGQWLKTRSAN"
     gene            complement(1103..1411)
                     /locus_tag="VFX26_02290"
     CDS             complement(1103..1411)
                     /locus_tag="VFX26_02290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HEX5573336.1"
                     /translation="MTDKPEGNEDMESYKKVVDSTTQAQQDFFKKFSNLQMDAMQNFF
                     SMIQGLTFYHAMFKTTIQSGGRISIPEAERQALKIEDGDLVQVIVIPIERKHKNNSDK
                     "
     gene            complement(1452..2258)
                     /locus_tag="VFX26_02295"
     CDS             complement(1452..2258)
                     /locus_tag="VFX26_02295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX5573337.1"
                     /translation="MSRETTAKKIQVHGNKIRYLDYDNFSSKTSENLVLLHGIGASAE
                     RWSKVIPFLHKHFRVIVPDIIGFGYSDKPTVEYNMPFFVKFLEDFLNTLGVKKASIVG
                     SSFGGLVAAEFAIKNTNMVNKLILVSPAGTMKTSTKMLEEYILAALYPTHDNVWRAFI
                     NMAFDPRTVTEQTIEEFIDRMKLPNAKYAFMSTMIGIRNTTNLSSRLTKILSPTIIVC
                     GEQDEMIPVKCSEDYRNIPNSNLQVIPKCGHTPFTEKPEVFSKIAIDFLR"
     gene            complement(2436..3194)
                     /locus_tag="VFX26_02300"
     CDS             complement(2436..3194)
                     /locus_tag="VFX26_02300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEX5573338.1"
                     /translation="MLFPFFVIVGLIAGILGSMIGIGGGIIISPALTFLGLTPPQVAS
                     TSLFAVSSTSISSTIAYARSKKIQYALGIKMALLSIPGAVVGSYFSTYIDPGYFKILL
                     AIILVATGIYLMYRKSISNGNSLSLESIWVKILFFSGTFVAGIISSLFGIGGGVVFVP
                     LMIVIVGLTMYLAAPTSQFVLMITSLVGLTTHIILGNPQYLPAVLLSIGSFAGAQIGS
                     RLSTKLSEQKLRLILGITFFGIALKLVLDFYQFG"
     gene            3342..3518
                     /locus_tag="VFX26_02305"
     CDS             3342..3518
                     /locus_tag="VFX26_02305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573339.1"
                     /translation="MEEYFCNICERSIEALSLEKHTKESEHIKRKKMLEKQLGNDSKF
                     PKPSRSAADLWKND"
     gene            3731..4921
                     /locus_tag="VFX26_02310"
     CDS             3731..4921
                     /locus_tag="VFX26_02310"
                     /inference="COORDINATES: protein motif:HMM:NF014244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M50 family metallopeptidase"
                     /protein_id="HEX5573340.1"
                     /translation="MLHTPFGLKFFDYVAKTRVAKAYATANTYLMPAITVIAIILIVG
                     GISTLISNVSVREDVREIGPRGNFLIPILNPLLPISYTLVALIISVFIHEAGHGIVAR
                     VYGIKVESTGIAFVLFIPIGAFVNLDKEGLDKATLKEKSAVLTAGPLNNMILAAISMA
                     LLFVVISSLTPIATQNTTNNGLQIISITDGSLAEKIGLTRGSSILTIGQTELRNQDDL
                     SQTLRSNIGKQSQIVWQDRQGKQIKDILSIPADTDPTKPILGVVAFPLDPNGTLELYK
                     RHFSFTFDINRPVPMLPLPTLDGQFVPFSDTMAPKYESSIFGPFFPIIANTLFWLWFI
                     NFNLGIFNALPITLLDGGQLYGSLIESRSKIDKNRLKQISSAVSTLMIVIVVMSLFLP
                     YVLF"
     gene            5106..7205
                     /locus_tag="VFX26_02315"
     CDS             5106..7205
                     /locus_tag="VFX26_02315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-CASP ribonuclease aCPSF1"
                     /protein_id="HEX5573341.1"
                     /translation="MGNGDLSNNSVDESISALENNDKVKRHSDTLSANQIQHTKKVDE
                     DFFKDIILKSIPKESQITNIRFEGPYVALYTLNPKFSLTELTYYLSSLSKNVKKRFVV
                     RTDPSIRLSEDETRSRVIKMLPNEVTISAVFCDDATGEVVLEVNHPESVDANTVIDIA
                     QATGWIAHTLRSPHIQSSSMNMIHSTQKSSAKERNLFLQSLGKRVFRPPLILENNDSN
                     LNFVNQTSDKRSEITELKSKIRNKEEIAIFCLGGVKQVGRSCFIVVTSESKIMLDCGI
                     NPGEPLGISAYPRLDWFNFDLDEIDAVIISHAHIDHQGFLPTLFKFGYKGPVYCTEPT
                     LPLMTLLQYDSVKISKSNGTFLPYETRDVNEVIKHCITLPYGKPTDISPDITITFNNA
                     GHIMGSATVHINVFGTHNILYSGDYKYARTQLLDSAVSVYPRVETLITESTYGNTVDI
                     MPDQSVVYKTFTDAINKTLSAGGKVLIPVPAVGRAQEIMLVLDKEMRQGRLMEAPVFI
                     EGMISEASAIHMSYAHYLGFDVRKSVSNGVNPFQSEYFTVVNGYERREDVFNDENPSV
                     IMATSGMLEGGPSVEYFKKIAPDKKNNILFVSYQINGTLGRRVIDGGLMEISMLDEKG
                     KVKVIPIKCASQKIDGFSGHSDFNQIMNFTARIKPKRVLVNHGEKSKSENVASNIFSR
                     FKIRSIVPDNREIIKLR"
     gene            7608..7751
                     /locus_tag="VFX26_02320"
     CDS             7608..7751
                     /locus_tag="VFX26_02320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573342.1"
                     /translation="MAIRYKCINCNIVLSGEGASRHYLANPTHKLEKLPPQLKQAKNI
                     DPS"
     gene            complement(7769..>8032)
                     /locus_tag="VFX26_02325"
     CDS             complement(7769..>8032)
                     /locus_tag="VFX26_02325"
                     /inference="COORDINATES: protein motif:HMM:NF015632.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0147 family protein"
                     /protein_id="HEX5573343.1"
                     /translation="DKENQERLANAISTLDSIARNNNIQKNIRNIVREILTGIKDEKN
                     GSISVRAANTISMLDNVTQNPQMQSHIRTLLWQVVSTLESIRE"
BASE COUNT         2640 a         1456 c         1445 g         2491 t
ORIGIN      
        1 aataagaata ctcaaaatcg gaatctaacc ggatactcaa agatatccaa gactatcgag
       61 ttactctcta gaggtaatca tatctctgtg ggagatactc caaatgatat cgtatgtgag
      121 acaagattat atcgactctt acattaccac agcctcgtga aaaaagtttc tccaactcct
      181 attttggttg tttatgcatt ggtcaacaga tcatacgtac tagatctaca accaaacaaa
      241 agctggatcc gtcatcttct ggcacaaggt tttgatattt atctacttga ttggaaatcg
      301 ccgactaaga tggacaaata tgtctcattc gacgactatg ttaattccta cattgacgat
      361 tgtgtagaaa tagttcaaaa taataattct gccgataaaa ttactcttca tggatactgt
      421 atggggtcgt ctatgtcggc catgtatact tccttgcacc aagaaaaaat taagaattta
      481 gtcacaatcg cgccggtcgt cgacacaagt aaagattcaa ctgttattgc aaacatttcc
      541 agacaaatgg atattgataa attagtatct acgataggtt acttacctcc agaaaaactc
      601 tatgaatgct attccatatt gaaaccattc aaacagggag ttaacaaata ctttaatcta
      661 attgaaaata ttgacaatga atcgtttgtg cagaattttt tacgaattga aaaatggttg
      721 tatgatactc ctccgatagc aggtgaaaca ataaaacaat ggataaatga tatctacaaa
      781 aataacatgt tatttaaaaa ccaatttaga ttagggaaag ccatagtaga ccttaaaaaa
      841 attaatgttc cacttctaaa tattgttgca gaggaggatc atcttgtctc tccggaatgt
      901 agcgttccct taaatgaagt ggtatccagt gaggatagac gattaattcg gttccatacc
      961 ggacacgtgg gtttaattgc aagtagctat tcacaaaata acgtattacc aaaagtagga
     1021 caatggctta aaacacgttc ggctaattag tagtcagttc aattaacgct taatggactg
     1081 aactaaacat cataattaca aatcatttgt cggagttatt cttgtgtttt ctttcaatag
     1141 gaattactat gacttgaaca aggtccccgt cttcaatttt caacgcctgt ctctcagctt
     1201 ctggtatcga tattctgcca ccgctttgaa tagtggtctt gaacatggca tggtaaaatg
     1261 tcagaccctg tatcattgaa aagaaattct gcatcgcatc catttgaaga tttgaaaatt
     1321 tcttgaaaaa atcctgctgt gcctgagtag tactgtctac tactttctta tacgattcca
     1381 tgtcttcatt tccttccggc ttatcagtca tacctgtaat tttgaaaagc cgtttattta
     1441 atactattga atcatcttag gaaatcgata gctattttag aaaatacttc cggtttttca
     1501 gtaaaaggag tatgaccaca ttttgggatt acttgcaaat tagaattagg aatattccta
     1561 taatcctccg aacatttcac tggaatcatt tcatcttgct caccacaaac aataatcgtt
     1621 ggtgaaagta tcttggtcag tcgagaagac aggtttgtag tgtttcttat cccaatcatg
     1681 gtggacatga aagcatactt tgcatttgga agtttcattc tatcgataaa ttcttctatt
     1741 gtttgttccg taacggtacg tggatcgaaa gccatgttga tgaatgccct ccagacatta
     1801 tcatgtgtcg gatacaaagc agccaagata tattcttcca gcattttagt cgaagtcttc
     1861 atggtcccag ccggagaaac taagattagt ttgttcacca tgttagtatt cttgattgca
     1921 aactctgctg caaccaatcc tccaaatgaa gaacctacta tacttgcttt tttgacgcct
     1981 aaagtattca ggaaatcttc gagaaatttt acaaagaatg gcatattgta ttctacagtt
     2041 ggcttatcac tataaccaaa tccgattata tctggaacaa ttactctaaa atgcttgtga
     2101 agaaaaggta tcaccttaga ccacctctcg gcagaggcac ctatgccatg taagagcacc
     2161 aagttctcac ttgtctttga actgaaatta tcataatcga gataacgaat cttgtttcca
     2221 tgaacttgta tttttttcgc tgtagtttct ctggacaata atctgcagtc tcatagatat
     2281 ttctgggtcc actttattac ttttatcatg aattgccgca ttattgatat cctaacccat
     2341 tgtcgttaat atgtccatat ttatgagtga aaaggaattt agttctatct caaattatct
     2401 ttgaaattgg gtgtaaaacg tgtcactctt gtggattatc caaattgata aaaatctagg
     2461 actaatttga gcgcaatacc aaaaaaagta attccgagta ttagtctcaa tttttgttca
     2521 ctcaatttcg ttgataatcg tgatcctatc tgagctcctg caaatgaacc tattgataag
     2581 agtaccgcag gaagatattg aggatttcct agtatgatgt gggttgtcaa tcctaccaac
     2641 gatgtaatca tcaaaacgaa ttgcgacgtt ggcgcagcca aatacatcgt caatccaaca
     2701 atcactatca ttaagggaac aaatacgaca cctccaccaa ttccaaacaa actcgagata
     2761 attccagcaa cgaatgtacc ggaaaaaaag agaatcttta cccaaattga ttccaatgac
     2821 aaggaatttc cattgcttat cgattttcta tacattagat aaattcctgt tgcgactagt
     2881 attatcgcta gtagtatctt gaaatagcct gggtcaatat atgttgaaaa atacgaacct
     2941 actaccgcac ctggtattga taataatgcc atcttaatcc caagtgcgta ttggatcttt
     3001 tttgatctag catatgctat ggttgaggag atgctcgtag aagaaactgc aaagagactt
     3061 gtgcttgcaa cttgtggcgg tgtcaagccg agaaaagtca aagctggaga tattatgatt
     3121 ccacctccaa ttcctatcat ggaacccaag atgcctgcta tcagaccaac tatgacaaaa
     3181 aagggaaaaa gcaaaaactc ttccaagtca aatacctgtt aattctatta cgattgtagt
     3241 aagttaataa atcgtttgta tattctcgtt atgagaatgt aaattttgtg gcataccagt
     3301 atatcatgaa ttaaatttgg ttctttttta cataatcatg aatggaagaa tatttctgca
     3361 atatttgtga aagatctata gaagcgttat cattagaaaa gcacactaag gaatctgagc
     3421 atattaaaag gaaaaaaatg ttagaaaagc aactgggaaa cgatagcaaa ttcccaaaac
     3481 catcaagatc tgcggccgat ttgtggaaaa acgattgata ctggtaacga tttatgataa
     3541 tttaagatat ccgatagatt tgatatgata tttcactttc taaataaaat tcatgtaatt
     3601 tcttttgata ctttttatag ttcaattccg atgaattaat ttaaatatgt aaattattgt
     3661 actcatagtt ctggaaaaac aaaaacaaca aggtattcac accgacatat ttcacccatt
     3721 tcctctgatt ttgctacata ccccgtttgg cctaaagttc tttgattatg tagcaaagac
     3781 cagagttgct aaggcatatg ccacagcgaa tacatactta atgcctgcca taaccgtgat
     3841 tgcgataata ctaatagttg gtggaatatc cactctcatt tcgaatgttt ctgtaagaga
     3901 ggatgtcagg gagataggtc ccagaggaaa ttttctaatc cccattctta acccgcttct
     3961 tccgatttcc tacactttgg ttgctctcat aataagtgtc ttcatacacg aggcaggaca
     4021 tggcatcgtt gcaagagtat atggaataaa ggtagaatca actggtattg cttttgttct
     4081 ctttattcca attggagctt ttgtgaatct tgacaaggaa ggtttagata aagcaacatt
     4141 gaaggagaaa agtgccgttc ttactgccgg ccctctgaac aatatgattc ttgcagcaat
     4201 ctcaatggct ttgttattcg tagtaatatc ctccttaacg cctattgcta cgcaaaatac
     4261 cacgaataat ggacttcaaa taattagtat aactgatgga tcactagcgg aaaaaattgg
     4321 tcttacacga ggttccagca tcctaactat tgggcaaact gaattacgta accaagacga
     4381 tttgtcgcaa actttaagat caaatatagg caaacaatct caaatagtat ggcaggacag
     4441 acaggggaaa caaataaagg acattctatc aattccggcc gacaccgacc ctactaaacc
     4501 tattcttggt gtagtagctt ttccccttga tcccaatggg acccttgaat tgtacaagag
     4561 acatttttca tttacctttg atataaatcg acctgtacct atgcttccat tgccaacgct
     4621 agatggacaa ttcgtaccat tctcagatac tatggcgcca aaatatgaat caagcatatt
     4681 tggtcctttc tttcccataa ttgcaaatac tctcttctgg ctttggttca tcaattttaa
     4741 tctgggaata tttaatgccc ttcctattac acttttggac ggaggtcagt tgtacggatc
     4801 acttatagag agcagatcca aaattgacaa gaatcgtctc aagcaaattt cgtcagcagt
     4861 atctacgtta atgatagtta ttgtggttat gtcattattt ctaccatatg tgcttttcta
     4921 ggatgatggg caggaaaaaa caattaattt ccaaaatata tattaagaga gaagttcaat
     4981 ttcactatgg atacaaccgg taagaacttt aagaccttac tatctcgcag tgtgatagta
     5041 gctgaatatc attattaaag taaggaaaat agaaaatcag tccgagtatc tagaagaatg
     5101 ttaaagtggg taatggagat ttaagtaata attctgtaga cgagagtatc tctgcactag
     5161 agaacaatga caaggttaag cgacattctg atactttatc tgcaaatcaa attcaacata
     5221 caaagaaagt agacgaagat ttctttaagg atataatatt gaaatctatt ccaaaggaat
     5281 cccaaattac aaacataaga tttgaaggtc cgtatgttgc tctttatacg ttaaatccta
     5341 aattttcatt aactgaatta acctattatc tttcatcact ttcaaaaaat gtcaagaaaa
     5401 gatttgtggt aagaactgat ccctcaatta ggttatctga agacgagaca agatccagag
     5461 taataaagat gttaccaaat gaggttacaa tatctgctgt attttgtgat gatgcgacag
     5521 gagaagtagt ccttgaagta aatcaccctg aatctgtaga tgcaaatacg gtaatcgata
     5581 ttgcacaggc gacaggttgg atagcacata cattacgttc tccacatatt cagtcaagta
     5641 gtatgaacat gatacattct actcagaaga gttctgcaaa ggagaggaat cttttcttac
     5701 aatcactagg caaaagagtt ttcaggccac ctttaatttt ggaaaacaat gattccaatt
     5761 taaatttcgt caatcaaaca agcgataaga gatcagaaat tactgaactg aaatctaaga
     5821 ttaggaacaa ggaagaaata gctatttttt gtctgggcgg ggttaaacaa gttggaaggt
     5881 catgttttat tgtcgtaact tccgaaagca agattatgct tgattgcggg ataaatcctg
     5941 gtgagccgct aggaatttca gcttatccac gattagattg gtttaatttt gatcttgacg
     6001 agatagacgc cgtaatcata agtcatgcac atatagatca tcagggattt ttgccaacat
     6061 tattcaagtt tggatataaa ggtccggttt attgcactga acccacacta cctttaatga
     6121 ctctcctaca gtacgattcc gtaaaaattt ctaaaagcaa cggtacattt ttaccatacg
     6181 aaacaagaga tgtaaatgaa gttatcaagc actgtataac gttaccttac gggaaaccta
     6241 ctgatatatc acctgatatc accataacct tcaacaatgc tggacatata atgggaagtg
     6301 ctacggtaca catcaatgta ttcgggactc acaatattct ttattccgga gattacaagt
     6361 atgcccgaac ccaattattg gatagtgctg tttctgttta tcccagagta gagacattga
     6421 taaccgagag cacatacgga aacacagtcg atataatgcc agatcaatct gtagtataca
     6481 aaacttttac cgatgctatt aataagacct tgtcagctgg aggaaaggta ttgattcctg
     6541 ttcctgcagt cggaagggcc caagaaataa tgttggtcct agataaggag atgagacaag
     6601 gacgtcttat ggaggcaccg gtctttatcg aaggaatgat atctgaagcc agtgcaatac
     6661 atatgtccta tgcacattac cttggatttg atgtaagaaa atcagtatct aacggtgtga
     6721 atccatttca atcagaatac ttcacagtag ttaacggcta cgaaagaagg gaagacgtat
     6781 tcaacgacga aaacccgagt gtcataatgg caacctctgg aatgttggaa ggtggtccat
     6841 ccgtagaata ctttaagaaa attgcaccag acaagaaaaa taacatacta tttgtttcct
     6901 accaaattaa tggaacatta ggaagacgcg tcattgatgg cggtttgatg gagatcagta
     6961 tgctggatga aaaaggtaag gttaaagtta ttccgattaa atgtgcaagt cagaaaattg
     7021 atggatttag tggccatagt gattttaacc agataatgaa ttttactgca agaataaaac
     7081 caaagagagt attggtcaat catggtgaaa aatctaaatc agaaaacgta gcttccaata
     7141 ttttttctag attcaagata agatctatcg ttcctgataa tagagaaatt atcaagttga
     7201 gataattatg aaaccataga tttcctattc ggatttagaa taatatggag gtagagatta
     7261 gtagatgaac cgatctgata tcgctgttcc tcatattggt aagaatatac ctatttacat
     7321 gctttctgga acatatagat tttcccattg acctgcattt gctcaagttc agaaagctag
     7381 attagtgtca atggcacacc gaccctgcga tatggatttg tttgaagtat gataatccga
     7441 caaataatag gacattagac caattatctt aagatctgta aagctaatac taatagcaac
     7501 attgacaaag gtaaggtagc agggacatca gaatgggcca ggatggatct aaaattgatg
     7561 ttttgttcag tatcttttta gatatgtagg tataactata attgtaattg gctataagat
     7621 acaaatgtat taattgtaat attgtgctta gtggtgaagg tgcgtccaga cactatcttg
     7681 ctaatcctac tcataaactt gaaaaacttc cacctcaatt aaaacaagcc aagaatattg
     7741 atccttcttg atttgatgga tgaatttcct attctcttat actctctaac gttgaaacca
     7801 cctgccaaag tagggtccgt atatgagatt gcatctgcgg attttgagtc acattatcta
     7861 gcatacttat agtatttgcc gccctaacag aaattgatcc gtttttttca tcctttattc
     7921 ctgtcaggat ctctcttaca atatttcgaa tatttttttg aatattatta ttcctagcta
     7981 tactgtccaa agtgctgatc gcatttgcaa gcctctcctg attttccttg tc
//
LOCUS       DASUMD010000088         4095 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_905059, whole genome shotgun sequence.
ACCESSION   DASUMD010000088 DASUMD010000000
VERSION     DASUMD010000088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4095)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4095)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4095
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_905059"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(13..165)
                     /locus_tag="VFX26_02330"
     CDS             complement(13..165)
                     /locus_tag="VFX26_02330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573344.1"
                     /translation="MYAITTATFIGFVIILGLSRAKRYRHHAAPVASSESKKVKYSSD
                     GKPMSD"
     gene            complement(371..1432)
                     /locus_tag="VFX26_02335"
     CDS             complement(371..1432)
                     /locus_tag="VFX26_02335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573345.1"
                     /translation="MVLILIFILVSTFIPNFFSFAHLSHTPHYNGGSNRDGMGKYYPY
                     MALDPEYAAPDEPTQITFSIQDFDGNDVYDIETMVEIYQESTGERVKGFPWTVRDIGD
                     FNLYYVFPDPGSYEIVLSVANDDKMVNHNQLDAPRSILSSTADCNCQRVIFNVTISDS
                     WGLVRNSLLVISILSPIIVLGLVLGRTYLKRIKQTSVTGAVPEKETLKYIIMLLAIAG
                     GLVHLAIFPEHGSLQIFYSVFLMAAAGAQVAYGILYILINFTTEAYSGNNRNFILSQY
                     KKRVALNLFGLIGTSVLIGLYAYSVVVAPPLSPDNKAENIDIAGIMAKSLEILLVIGI
                     IYLLVWEKRRINKILVSPK"
     gene            1652..3586
                     /locus_tag="VFX26_02340"
     CDS             1652..3586
                     /locus_tag="VFX26_02340"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: protein motif:HMM:NF016724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HEX5573346.1"
                     /translation="MGKLIAADEYLNNFPHGTFRNNQDNVIKQICEAFNSGYKCIILE
                     APTGFGKSAIAITVARTLRSSYICTATKDLQTQYSHDYKFLKVAKGKSNFQCRVKEDF
                     IDAGKYLCASCNSRTEIECKHTSCDYGPCLSDESMEGSGCKYRTFINDYKVDNKGNEN
                     ERIFISRDKLENYKNEYSNWIHLKNFDSPSEWNPCYYFDQLFQALKASHSIFNYSIFL
                     SLLANKNMMQQRELLVLDEAHLLETEIVKFRGLSISKKRWRRYIHDFKMIDYGYDMHG
                     WLEFLIDLEKTMLALIGYDSLVHSLVKERKVKYGHDSMRNPKAKSRRIVSASELFEDD
                     ASLELKITSENGKNIHIDKELLIDIVQDIEKLTRTINNILSSPKNWIVSEVYKENYDV
                     TRVEFKPLDPSKYIKAIVEKCPKTLIMSATILNHKTFEKNIGLDSEDNNTKFIQIQSD
                     FPIENRPIFPLSVEYLNFSNLQQMDVKSKISRAIDNIMHIHSNDKGIIHTSSYEQLNF
                     IKENLSKMNSRRLILTDPEIERDEVIREHAESTKPTVLISPSLHTGLDLKDHLSRFQI
                     ITKVPYPNVADKWTSEKRKINKEWYYWQTALRLVQAYGRSVRSKDDWAKTYVLDSAFN
                     YFVKVNNNILPKWFLSAIRN"
     gene            3817..>4095
                     /locus_tag="VFX26_02345"
     CDS             3817..>4095
                     /locus_tag="VFX26_02345"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX5573347.1"
                     /translation="MARKWLVAIIDDESDIVNLFRDALNKIDGLSVFTFTDPMTALEH
                     FKINKGAYALIISDLRMPGINGTDLVHKIKKENPLVRTLLMTAFEVDDN"
BASE COUNT         1427 a          678 c          735 g         1255 t
ORIGIN      
        1 taaaaaaaaa atttaatctg acattggttt cccgtcagat gaatacttta cctttttact
       61 ttcagatgat gcaacagggg cagcatgatg tctgtatctc ttagctctcg ataagcctaa
      121 gatgattacg aaacctatga aagtcgccgt agttattgca tacatcaaca tgctatctgc
      181 cataacattg gcttctcaga gcttgtttaa aaatatttat gagcccagat gaatagtttt
      241 ttgaaattcc tttacaaaat ataaaaataa gttgaaatta tttctaatta actataaaaa
      301 ttgctcaaaa tgcctttaag aaaattttag ataacataat aactagacgc gataaagatt
      361 tccagaatca ttattttgga ctgacaagaa ttttattaat tcttctcttt tcccatacta
      421 acaagtaaat tataccaatt actaaaagga tctccagaga cttggccata attcctgcaa
      481 tatcaatatt ttctgcttta ttatctggtg acaatggggg cgccacgact actgaatatg
      541 cataaagtcc tatgagaacg gaagttccaa taagtccaaa gagattcaag gcgacccgtt
      601 tcttgtattg acttaaaata aaatttctgt tgttaccaga atacgcttca gtagtaaaat
      661 tgatcaaaat atacaaaatc ccatatgcga cctgagctcc tgctgcagcc attaagaaaa
      721 ctgaataaaa gatttgtaaa gaaccatgtt cgggaaaaat tgccaagtga accaggcccc
      781 ctgctattgc aagtagcata atgatgtact ttagagtttc tttttctggg accgcgccag
      841 taactgaagt ctgttttatt ctcttcaaat atgttctacc taagactaaa cctagaacta
      901 tgatggggct caagatagaa atgaccaaga gagaatttct aactagtccc cacgaatccg
      961 agatagtaac attgaatatc acacgttggc aattacaatc tgctgtactt gacagaatgg
     1021 atcttggggc atctaattga ttgtgattca ccattttgtc atcgtttgct acactaagta
     1081 ctatttcata cgaaccagga tccgggaaca catagtatag attaaaatct ccaatatctc
     1141 gtactgtcca agggaagcct tttactcttt caccagtgct ctcttgatat atctcaacca
     1201 ttgtctcaat atcataaacg tcatttccat caaaatcttg tatactgaaa gttatctgtg
     1261 ttggttcgtc aggtgccgcg tattccggat ctaacgccat atacggataa tactttccca
     1321 tcccatccct atttgatccc ccattataat gaggagtatg agaaagatgt gcaaacgaga
     1381 aaaagttagg aataaaagtt gatactaata tgaaaattaa gattaaaacc aaaacataat
     1441 ggattttcat attattgatg tgagatctag cgtaatggtt tcatataagt cgtgcatgca
     1501 gtttagaaag ttctttcaga atcaacaaaa tttgtgcctt attgatgtat gtaattaaag
     1561 atgactctac aggtgtcgta ttttgtcctt catattgaag acggaataag aaaaatttat
     1621 ttcagcaatc acttaactcc tttctctata tttgggcaaa ttgatagctg cagatgaata
     1681 tttgaataat tttcctcacg gcacatttag aaataatcaa gataatgtaa ttaagcagat
     1741 ttgtgaagct ttcaattctg gttataaatg cattattttg gaagcaccga cagggtttgg
     1801 caagagtgcg attgcaataa ctgtagcacg aactcttcgg tctagctaca tatgtactgc
     1861 gactaaggat cttcaaactc aatactctca tgattataag tttctaaagg ttgctaaagg
     1921 aaaaagcaat tttcagtgta gagtaaagga agactttatc gacgctggaa aatatctgtg
     1981 tgcttcatgt aattcaagaa ctgaaattga gtgcaaacat acctcctgtg actacggacc
     2041 atgtttatct gatgaatcaa tggaaggatc tggatgcaaa tacagaactt tcataaatga
     2101 ttacaaggta gataacaaag gaaatgaaaa tgaaagaatt ttcataagta gagataaatt
     2161 agaaaattat aaaaatgaat attcaaattg gattcattta aaaaattttg attctcctag
     2221 tgaatggaat ccgtgttact attttgacca attatttcag gctttaaagg cgagtcattc
     2281 aattttcaat tactctattt ttttgtcgtt actagcaaac aagaatatga tgcaacaacg
     2341 agaattgctt gtcttggatg aagcacacct gctcgaaact gaaatcgtaa agtttagagg
     2401 actttctata tcaaagaaac gatggcggcg atatattcat gacttcaaga tgatcgatta
     2461 tggatacgat atgcatggtt ggttagagtt tttgattgat ttggagaaga ctatgctagc
     2521 tttaatagga tatgactctt tagtacactc actggtaaag gaacggaaag taaaatatgg
     2581 acatgactct atgcgcaatc ctaaagccaa aagcagaaga atagtgagtg cgtcagaact
     2641 gtttgaagat gatgctagtc ttgaattaaa aattacatct gagaacggaa aaaacataca
     2701 tatcgataag gagttattga ttgatattgt tcaagatatc gaaaagctta caagaactat
     2761 aaataatatt ctttcaagcc ctaaaaactg gatagtctca gaagtgtata aggaaaatta
     2821 cgacgttacc cgggtagaat tcaaaccgtt ggatccatct aaatatatta aagcaattgt
     2881 cgaaaaatgt ccgaaaacgc ttatcatgag cgccactatt ttgaatcata aaacgtttga
     2941 aaaaaacata ggtcttgatt cagaagataa caatactaaa tttatacaaa ttcaatcaga
     3001 ctttccaatt gagaatagac caatttttcc tcttagcgta gaatatctta attttagtaa
     3061 tttacagcag atggacgtaa agtcaaagat atcgagggca attgacaata taatgcatat
     3121 tcatagtaac gataagggta taatccatac aagctcatat gagcagctta attttatcaa
     3181 ggaaaatctt tcaaaaatga attcaaggag attgatcttg actgatccag aaattgaaag
     3241 ggatgaagta ataagggaac atgcagaaag cacgaaacca accgtgctca tttctccatc
     3301 acttcatact ggacttgact tgaaagatca cttatccaga tttcaaataa ttactaaagt
     3361 accttatcct aacgtagcag acaaatggac ttcagagaag aggaaaatta ataaggaatg
     3421 gtattattgg cagacagctc tgagattagt tcaagcatat ggtagatctg taaggtctaa
     3481 ggacgattgg gcaaaaacat atgttttaga ttctgcattc aactattttg tcaaggtgaa
     3541 caacaatata cttccaaaat ggttcctgtc tgcaatacga aactagccca agattgttaa
     3601 atttggcttg gctacgatgt caattagcta ttcctcacaa tacatgggct caataagaga
     3661 ctggttctat tggttttttg gtacccgtct tgttccttat ataagatagc acaaagaata
     3721 tcaaatttgg attttattat ttattaatat gtatagctaa acgatagata atcagtttca
     3781 ggtatcaaaa gattgatgga aggttgttag tttttagtgg ctaggaaatg gttagtagcc
     3841 attatagacg atgaatcgga tattgttaac ttgttccgcg atgctctaaa caagatagat
     3901 ggattgtcag tattcacgtt tacggacccg atgacagccc ttgaacactt caagattaac
     3961 aaaggtgctt atgcactcat aatctcagat ttaagaatgc cagggatcaa tggcacagat
     4021 ttagttcaca aaataaaaaa ggagaatccc ttagtaagaa cgttacttat gaccgcattt
     4081 gaagtggatg ataac
//
LOCUS       DASUMD010000089        10289 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_353214, whole genome shotgun sequence.
ACCESSION   DASUMD010000089 DASUMD010000000
VERSION     DASUMD010000089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 10289)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10289)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10289
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_353214"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(79..297)
                     /locus_tag="VFX26_02350"
     CDS             complement(79..297)
                     /locus_tag="VFX26_02350"
                     /inference="COORDINATES: protein motif:HMM:NF018096.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1059 domain-containing protein"
                     /protein_id="HEX5573348.1"
                     /translation="MTYGLLVALLRLICRETGLDCDFVIEGETEEEILSKGADHAIKV
                     HGLKAEDIFLEQTPCNFLCQTLSKLRNE"
     gene            349..1017
                     /locus_tag="VFX26_02355"
     CDS             349..1017
                     /locus_tag="VFX26_02355"
                     /inference="COORDINATES: protein motif:HMM:NF015438.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HEX5573349.1"
                     /translation="MDRLCALKLLSLNVGLPRQVNFQNELVTTGIYKEPVSGRVRLRK
                     LNLDGDKQADLTVHGGADKAIYAYAGEHYSYWHKELYGMLLPWGMFGENFTTQGMFEE
                     MVNIGDQFQVGTARVVATQPRMPCYKLGVKFGRMDIIKKFLASGLTGVYFKVMKEGEL
                     EQGDEIKLIKKDENNVTIKDIVRLYTVNKDDLQTMERAVKVKDLPNGWKFHFIEQLKQ
                     ARKK"
     gene            1058..2056
                     /gene="moaA"
                     /locus_tag="VFX26_02360"
     CDS             1058..2056
                     /gene="moaA"
                     /locus_tag="VFX26_02360"
                     /EC_number="4.1.99.22"
                     /inference="COORDINATES: protein motif:HMM:TIGR02666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HEX5573350.1"
                     /translation="MKSKLIDNYGRIAKKLRISVTDMCNMRCGYCMPKDNTRWFDTTE
                     VLSFEEIIRLSSIFANLGVEKIRITGGEPLVRPSVENLIKSIAMIGDIKSIGLTTNGL
                     LLLERVEALQSSGVDSVNISLDSFKEDRFKMMTGVNGLDNVLSSIQKAKDVGLDVKVN
                     TVVVRGWNDDEVVEFANFARRTGITVRFIEFMPVDGTGIWRSDLVFSKKEMIVKIETD
                     IGKVFPASEQEMSAPASLYSFSDRIGTVGFIPSVTEPFCSQCDRIRLTSDGRFLTCLF
                     ENPGYDIKSYLRKGASDEEISHCLIHCMTMKQEGIASLIRINGLKPKLNLMHTIGG"
     gene            2064..2333
                     /locus_tag="VFX26_02365"
     CDS             2064..2333
                     /locus_tag="VFX26_02365"
                     /inference="COORDINATES: protein motif:HMM:TIGR01687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HEX5573351.1"
                     /translation="MRSDIQDNEKIKVKLFAILRERVGESEITITVPSGITVNHLNSE
                     ILKKYPQLKSFSNKFVTSVNCKVTTGDTVITSKDEVALLPPVSGG"
     gene            2337..2753
                     /locus_tag="VFX26_02370"
     CDS             2337..2753
                     /locus_tag="VFX26_02370"
                     /inference="COORDINATES: protein motif:HMM:NF014448.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HEX5573352.1"
                     /translation="MISITNNQLSLQEVMLELEDNSAGALSVFIGNVRNRGRSGNVSE
                     IYYEAYSEMAEQEMREIENEAQTKWGIKKLVAIHRIGNIKVGESSIIIGVSSEHRHEA
                     FEACKYVINNVKTRVPIWKKEISRESQKWADGILLE"
     gene            2746..3693
                     /gene="moaCB"
                     /locus_tag="VFX26_02375"
     CDS             2746..3693
                     /gene="moaCB"
                     /locus_tag="VFX26_02375"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: protein motif:HMM:NF002947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional molybdenum cofactor biosynthesis
                     protein MoaC/MoaB"
                     /protein_id="HEX5573353.1"
                     /translation="MNKEKKSDKKSKGMFDVGAKPDSYRTARAKAVLNIEAKTAVLIR
                     QGKSPKGDIVEAAKIAATSGAKKTSDLIPYCHPIPIDHIKVQVSVKSRSIEVDVEVKS
                     IWKTGVEMEALSGACIGALTIYDMLKPIDDTLFISSVKLVEKSGGIGQFAIKKGNKIR
                     AGVIVVSDSVAAGKRADKSGKFIVTKLKDRSIDVVKYQVVPDDSSVIEELLMKYSDDL
                     HLNLIFTTGGTGLGLRDVTPEATRNVLEMEIKGIAEASRAYGQRRTPLSMLSRGVAGV
                     RGKSLIINIPGSLNAVSESLEFLFPGLEHAFKMMEGHGH"
     gene            3743..4459
                     /locus_tag="VFX26_02380"
     CDS             3743..4459
                     /locus_tag="VFX26_02380"
                     /inference="COORDINATES: protein motif:HMM:NF014035.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEX5573354.1"
                     /translation="MYSSVGFAGGSSYIAILVLVGVNLFTIPPISLALNIVVASIALF
                     NYLRAGHLSLRISIPLLISVPFAFIGGSTILPEKTLILIFVIALFSASAMLLLSGNQI
                     KIRQEKIRKLNLSLPRLSLITLPLGAILGTVSGLVGIGGGIWLSPILILTGLANPKTA
                     AASASLFILTNSVSGLVGHSITKEVDFALILPLAFVVLLGGFLGSRLGAFKLSHEKLI
                     FIIGIIVAVAGINLATRLFK"
     gene            complement(4467..5804)
                     /locus_tag="VFX26_02385"
     CDS             complement(4467..5804)
                     /locus_tag="VFX26_02385"
                     /inference="COORDINATES: protein motif:HMM:NF015418.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HEX5573355.1"
                     /translation="MNHTIGMHWTPSKYTSVRASYSKLMNAINIRPMAESILAEQAVG
                     RVLWTDIVSHTDIPSSNCSHMDGFVVKYNDISRISQHGPMKLRIVPRRKEGKRENQIL
                     FKGQTIRVSTGEVLPRFGDTVIPVEYTQFDSKNSTIMVQRELAKGSFVSYKGSEIARK
                     DLLLNKSHILRAQDLALIAMLGIRRLKIFKKPKVAIIPTGNELTEDITDIKHGKILNT
                     NSRVISNLIEKLGGTPLDLGITPDNILKIKNKIRLALSESDIILTTGGSSVGLRDLVA
                     DSIVEIGKPGILVHGVKLDRGRVTGLAALRGRPIIILPGPIQGAVNAFIVFAQPLIRF
                     MLGLHPFYKPFISAKLTEDWNARKKFQNFTKIVYVKMTSSASGEFHAKPITGETTDIT
                     VLTGSNGFILVPERLTKLKSGQKVKINIFPGLSFSSLSPIEIPYLSEKSFLPF"
     gene            6066..6446
                     /locus_tag="VFX26_02390"
     CDS             6066..6446
                     /locus_tag="VFX26_02390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573356.1"
                     /translation="MSNQMSISVLVIAIGVVTVLIAVTSKVIFSQDLSMNNTQDESAV
                     NNQTMMMMPGGNMSFGSSLDNARMHLMEAIMDLNEGNIKGAIMQLNMTDQGIKMHEKE
                     MMDMMKIMKPNMSSNISKTQNESS"
     gene            6589..8250
                     /locus_tag="VFX26_02395"
     CDS             6589..8250
                     /locus_tag="VFX26_02395"
                     /inference="COORDINATES: protein motif:HMM:NF012401.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEX5573357.1"
                     /translation="MARNSHSFLVPFVAGLAAGAVAVAVSIILKDASGGLFLPEIASQ
                     ALFSVTPGEFESQAVENFGPLAKYSAFIGSIIANIVASGIIGIFLYKLFARVKRRGYL
                     LEALLSSALSYIIFVIIAIILVTLIQSRSGIQVVPLSLIALSLIPSQLAFGFVFSSFF
                     HGRSKDKSRKILEPKPVSDKTIDAIDIKNSRRAFLRLMVASAVALPIIYLGVDRLLSR
                     QNEAQELASTTTPNLLPQVGPPPKGFEDPNLAPLLASEVTPTYLFYRIDINPIVPQVD
                     SKSWNLTIKGLVEKPLTINYAQMKSMPPVEEYVTLECISNKIGGDLISTALWKGVRLS
                     YLLDMAAIKPNVKYVVFRCADGYDVGIPIERSQMEGTILAYDMNYTPLTPKHGFPVRA
                     IVPGLYGMMNPKWITEIELVDKVYEGYWQRLGWANNAEDKTGSSILIPGQAPARQRFR
                     KLDETTASSYGSKVPIAGIAFAGDRGIAKIEVSTDGGTTWKTAQVKDPLSQYTWVLWT
                     AGYVPPNKENYSVVVRATDKTGKVQTTEMSPPFPNGATGYHTITV"
     gene            8444..9058
                     /locus_tag="VFX26_02400"
     CDS             8444..9058
                     /locus_tag="VFX26_02400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573358.1"
                     /translation="MFDNTHYHRLSIYVLVLLLALLGITLSLVSNAAEDSDKLKQESM
                     EAFKQFNDMTEEQRNSALQNMSSTDMNMVMMGAAQINNEVNETIQAMTPPNTDMSSIY
                     ELRSGNFTNSGNISKVSGISRILSVNDIEFLRFEHFNITNGPELHVYFTNNGDLVNSK
                     DLGTLKGNIGPQNYFLGNIANQYDTVVIASKPFKMVYAKAMLEP"
     gene            9098..9478
                     /locus_tag="VFX26_02405"
     CDS             9098..9478
                     /locus_tag="VFX26_02405"
                     /inference="COORDINATES: protein motif:HMM:NF025887.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEX5573359.1"
                     /translation="MTPKEFLISYVKKFNSGDISSLISLYETEACFVSREGEVVKGID
                     NVRQRLQSFINMNGRIESKVIGVIHTNDIALVNTEWSFNGSGPDGKAVTITGKATDVL
                     RQQSDGTWRILIDNPWGTNLQMTV"
     gene            complement(9664..10188)
                     /locus_tag="VFX26_02410"
     CDS             complement(9664..10188)
                     /locus_tag="VFX26_02410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573360.1"
                     /translation="MKYFNTIIIFVLIHVTALSLPLHSVYSHIIDSNNVQLWKIPNDN
                     LTIQFAYRPEKPIIDTFTTLQFSVTNSLNGKHIGDSLAQVTVTNGQRLFKFQNISTQK
                     GDFSVDYIFPDDGTHQVLLRLDRNESIHLASFQVFVPHQSPPSILDNQGNLIIALGIF
                     AVVGTITILFLKKK"
BASE COUNT         3339 a         1768 c         2126 g         3056 t
ORIGIN      
        1 cgacgctatc ggtccaaaat taggattctt gattataaaa tggattagta agctttaaat
       61 ttttttttga agagcgatct attcgttcct taatttgctt aaagtctgac ataagaaatt
      121 gcatggagtc tgttcaagaa atatatcttc agcttttaaa ccatgtacct taatagcatg
      181 atctgcccct ttactcaata tttcctcttc agtttcaccc tctatcacga aatcgcaatc
      241 caatcctgtc tcacggcaaa tgagccttaa caatgcaact agtaaaccat atgtcacata
      301 aagtattaag tcttcgcaat ttggtctttg aaggtttatt taagatgttt ggatagatta
      361 tgtgctttga agttattatc gctaaacgtc ggtcttccac gtcaagtgaa cttccagaat
      421 gaacttgtaa ctactggaat ctataaggaa ccagtaagtg gtcgtgtaag attacggaaa
      481 ctcaacctcg atggagacaa gcaggctgac ttaacagttc atggcggtgc cgacaaggcc
      541 atctatgcct atgcaggaga acactatagt tactggcata aggaactcta cggcatgtta
      601 ttgccttggg gcatgtttgg agaaaatttt accacacaag gaatgtttga agaaatggtt
      661 aacattggag atcaattcca agttggaaca gcaagagtcg tggcaactca acctaggatg
      721 ccgtgttata aacttggagt aaaatttgga aggatggata ttattaaaaa atttttggca
      781 agtggtctta caggtgtcta tttcaaggta atgaaggaag gagagctaga acaaggtgat
      841 gaaattaaac ttatcaaaaa agatgaaaat aatgttacga taaaggatat tgtcaggtta
      901 tacactgtaa ataaggatga tcttcaaaca atggaacgtg ccgtcaaggt taaagattta
      961 ccaaatggtt ggaagtttca tttcatcgaa cagttaaagc aggcaagaaa aaaatgatat
     1021 ccattataac ctggtataca agcaaatgac aggatctatg aaaagcaaat taatagataa
     1081 ttatggtaga attgcaaaaa agctaagaat ctctgtcaca gacatgtgta atatgagatg
     1141 cggatattgc atgcctaaag acaatacgag gtggtttgat actactgaag ttctctcttt
     1201 tgaggagata attaggcttt catctatttt tgctaattta ggggttgaaa aaataagaat
     1261 aacaggaggt gaaccactgg ttagaccttc agtagaaaat ctaattaaat ctattgcaat
     1321 gattggcgac attaagagca tcgggctaac aaccaatggg ttactacttc tagagagagt
     1381 agaagcacta cagtctagtg gcgttgacag tgtgaatatt agtctagatt catttaaaga
     1441 ggatagattt aagatgatga cgggggtaaa tggattagat aacgtcctaa gttctatcca
     1501 aaaagcaaaa gatgttggac ttgacgtaaa ggtaaataca gttgtcgtca ggggttggaa
     1561 tgatgatgaa gttgttgaat ttgccaattt tgcaagacgc acaggcatca ccgtccgatt
     1621 tatagaattt atgccagtag atgggacagg gatttggaga agcgaccttg tttttagtaa
     1681 aaaggaaatg atagtaaaaa tagaaaccga tattggaaaa gtctttcctg cctcagaaca
     1741 agagatgtca gcacctgcta gtctctattc tttttcagat agaataggca ctgtaggatt
     1801 tattccctct gtaacagagc ctttttgcag tcagtgcgat aggataagac tgacttctga
     1861 tggaagattt cttacatgtc tatttgaaaa cccaggctat gatatcaaga gttatctgcg
     1921 caaaggagca tcagatgagg agattagtca ttgcttaatt cactgtatga ctatgaaaca
     1981 ggaggggata gcaagtctga taagaattaa tggtcttaag ccaaaactaa accttatgca
     2041 tacaattggt ggataagctc aaattgagat cggatattca agataatgag aaaataaaag
     2101 tcaaattatt tgcaattttg agagagagag tgggtgaaag cgaaataaca ataactgtac
     2161 cttctggcat cacagtaaac cacttgaata gtgaaatatt aaagaagtat ccgcagctca
     2221 aatcgtttag taacaaattt gtaacttctg taaattgtaa ggttactact ggagataccg
     2281 ttattacttc gaaggatgaa gttgcacttt tgccacccgt cagcgggggt tgaatcttga
     2341 ttagtattac caacaaccaa ctaagtttgc aagaggtaat gcttgaacta gaggacaatt
     2401 ctgcaggtgc gttatcagtt ttcataggca atgtccgtaa tcgagggagg tctggtaacg
     2461 tatcggagat ctattatgag gcttacagtg agatggcaga acaagaaatg agggaaattg
     2521 aaaatgaagc acaaacaaaa tggggaataa aaaaattagt tgcaattcat aggatcggaa
     2581 atataaaagt cggtgagagc agtattataa ttggggtctc ttcagagcat aggcatgaag
     2641 cttttgaggc atgcaaatat gttataaata acgtgaaaac tcgggtaccc atttggaaaa
     2701 aggaaatatc tagagaaagt cagaaatggg ctgatgggat tttacttgaa taaagaaaag
     2761 aagagtgata aaaaaagtaa gggtatgttt gatgttggtg caaagccaga ttcgtacaga
     2821 accgcacgag caaaggcggt attgaacata gaagccaaaa cggcagtatt gattagacaa
     2881 ggaaaatctc ccaagggcga tatagtggag gcagcgaaga tagcagccac ttcgggggct
     2941 aaaaaaacat cagacctcat accatactgt catccaatac ctatagatca cattaaagtt
     3001 caagtatcag taaaatcccg atcaattgaa gtcgacgtag aagttaaaag tatttggaaa
     3061 acaggggtag aaatggaagc cctaagtgga gcttgtattg gtgcattgac gatatatgat
     3121 atgctaaaac ccatagacga tacactattt atctcatctg tcaagcttgt tgaaaagtca
     3181 ggaggaatag gccaatttgc aattaagaag ggaaataaga tcagagcagg tgtgatcgtc
     3241 gttagcgatt cagttgcagc tggaaagagg gcagataaat ccggaaaatt catcgttaca
     3301 aaactaaaag atagaagtat tgatgtagtc aaataccaag tagtacctga cgatagttct
     3361 gttattgagg aactcttaat gaaatattca gatgatctcc atttaaactt gatattcaca
     3421 actggaggaa caggacttgg cctgagggac gtaacacctg aagctactag aaacgtctta
     3481 gaaatggaaa taaagggaat tgccgaggct agcagggcat atgggcagag aagaacaccc
     3541 ttatcgatgc tgtcaagagg agtagcggga gtaagaggta aaagtctaat aatcaatatt
     3601 ccaggaagtt taaacgcagt atcagagtcc ttagaattct tatttccggg gctagagcat
     3661 gccttcaaga tgatggaggg acacggccat taatgagcaa ttactgataa tacttgcccc
     3721 tgttttcttt gcaataagtt ttatttattc tagtgttgga tttgcaggag gaagcagcta
     3781 tattgccatt ctagtccttg ttggggtaaa tctattcacg atccctccca tttcattagc
     3841 tctcaacata gttgttgctt caatagcgct cttcaattat ttgagagcag gtcacctatc
     3901 acttcgtata tctattccgt tacttatctc agtaccattt gcttttattg gaggttccac
     3961 catactacct gaaaaaactc tcatactaat cttcgtaata gccctttttt cagcttcggc
     4021 catgctacta ttaagtggca accaaataaa aataagacag gagaaaatac gaaaattaaa
     4081 cctaagtcta cctaggcttt cattaattac attaccatta ggtgctattt taggaactgt
     4141 ttcgggcctt gttggaatag gtggggggat ctggttatca ccaatcctga tattaaccgg
     4201 cctagcaaat ccaaagacag ctgcggcttc agcaagcttg tttatactca caaattcggt
     4261 tagtggactt gttggccatt caattaccaa ggaggttgat tttgcactga ttttaccatt
     4321 ggcctttgtc gtccttcttg ggggatttct aggctccagg ttgggcgcct ttaaattgag
     4381 tcacgaaaaa ttgattttta ttataggaat catagtggca gttgcgggga ttaatctggc
     4441 aactaggttg tttaaatgat atatttctaa aacggaagga atgatttttc tgagaggtaa
     4501 ggaatctcta ttgggctaag tgatgaaaaa gacagaccag gaaatatgtt tatttttact
     4561 ttttgtccgc tttttaactt ggtaaggcgt tcgggaacca aaataaagcc attgctccct
     4621 gttaggactg ttatgtccgt agtttcccca gttataggct ttgcatgaaa ttcacctgat
     4681 gctgaactcg tcatcttcac atatactatt ttggtaaagt tttgaaattt ttttcgggcg
     4741 ttccaatctt cagtaagctt tgccgaaata aatggtttat aaaaaggatg cagacctaac
     4801 ataaatctaa tgagtggttg agcaaataca ataaacgcgt tcacagctcc ttgtatcggt
     4861 ccgggaagga taataattgg tctgccgcga agtgcagcga gtcccgttac ccttccgcga
     4921 tcaagtttta ccccgtgcac cagaattcct ggttttccaa tctcaactat tgaatcagca
     4981 acaagatccc gcaatccaac agaagatccg cccgttgtta agatgatatc actttcagat
     5041 aacgcaagtc taattttgtt ttttatcttg agaatattat caggcgtaat tccaagatct
     5101 agaggagtac ctcctaattt ttcaattaaa ttagatatga ctctgctatt agtatttagt
     5161 atttttccgt gctttatgtc agtaatgtct tcagtaagtt cattgcctgt aggaataatt
     5221 gcaacttttg gttttttaaa aatttttagc cttcgaattc caagcattgc aattaatgct
     5281 aaatcctgtg ccctaagaat gtgactcttg tttagtaaca aatccttgcg tgcgatttca
     5341 ctacccttat acgagacaaa cgatccttta gccaactctc tttgaaccat aattgtacta
     5401 tttttagaat caaactgtgt atattcaaca ggaataactg tatctccaaa acgtggtagg
     5461 acttcaccag ttgagactct aatagtttgt cctttaaaca ggatttggtt ttccctcttg
     5521 ccctcttttc tcctgggcac tatcctaagt ttcattggtc catgttgaga tatcctgcta
     5581 atatcattat attttacaac aaatccgtcc atgtgcgaac agttactcga cggaatatca
     5641 gtatgtgata ctatatcagt ccatagaacc cgtcctactg cctgctcagc aagaattgat
     5701 tctgccattg gcctgatatt tattgcattc attagtttgg aatagcttgc cctcactgac
     5761 gtatattttg aaggtgtcca atgcattcct attgtatgat tcatttagta tttaagagag
     5821 taccgctaag agaattaatc gattaaatcc aagcttagat atcatattcc gttggcggga
     5881 tcttttctgt taggtcagga gccggcttat tattgataat aaaatcgaat ttgaatggta
     5941 gagcaagaga atgttctgaa gcaacgaata tttggcaaaa gcatttcttg tacatttcag
     6001 tgtttcgtta cgcatttaga tactctttat ataatatgat ttggtcataa ttactacttt
     6061 tcgcaatgtc aaaccaaatg agtattagcg tattggtgat agctattggt gttgttactg
     6121 ttctgatagc agtaacatca aaagtcatct tcagtcaaga cctatcaatg aataatacac
     6181 aagatgaatc tgctgtcaac aatcagacga tgatgatgat gccaggtggc aatatgagtt
     6241 ttggatcttc cctagataat gctagaatgc atttaatgga ggcaatcatg gatctaaatg
     6301 aaggaaacat caagggcgca attatgcagt taaatatgac ggatcaagga attaagatgc
     6361 acgaaaaaga gatgatggac atgatgaaga ttatgaaacc gaatatgtcc tccaatatat
     6421 cgaagactca aaatgaatca tcataattgt gggaaagata gattaggttg ctaaagcaat
     6481 caatcaaaaa aatctgcctc taactgagaa gcttgccatc aaacatacca tagtttatag
     6541 taagatgaat caaaaaaacc ttaaattgtt aaaattcgat cgaagtacgt ggctaggaat
     6601 tcacacagtt tccttgttcc atttgttgca ggtctagcgg cgggagcagt tgctgttgca
     6661 gtgtcaataa tactaaaaga cgcgagtggt ggattgtttc tcccggagat agcctctcag
     6721 gcattgtttt cagtaacacc tggagaattt gaatcacagg cagttgaaaa ttttggacct
     6781 cttgctaaat attctgcgtt cattggttca attattgcaa atatagtagc ttctggaatt
     6841 ataggaattt ttctttacaa actatttgct agagtgaaga gaaggggata tcttctcgag
     6901 gctttactat catctgcttt gtcgtatata attttcgtaa ttatagcgat aatactagtt
     6961 acactaattc aatcacgaag tggtatacaa gtcgtgccac tatcccttat agctctatcc
     7021 cttattccgt cccagcttgc ctttggattt gtgttttcat cattctttca tggtagatct
     7081 aaggacaaat caaggaaaat actcgaaccc aagcctgttt ctgataaaac aattgatgcc
     7141 atagacatta aaaatagtag aagagcattt cttcgcctaa tggtagcctc agctgtagca
     7201 ttacccataa tttatcttgg agttgatagg ctactttcca gacaaaatga ggcacaagaa
     7261 ctggcatcga ctactacccc taacctgtta ccacaggttg gtcctccacc taagggcttc
     7321 gaggatccaa atctagcacc acttcttgcg tctgaagtta ctccaacata tttgttttac
     7381 agaattgata tcaatccaat agttccgcaa gtcgattcaa agtcttggaa tcttacaata
     7441 aaggggctag ttgaaaaacc attgactatt aactatgccc agatgaagtc aatgcctcca
     7501 gtagaagaat atgtcacatt ggaatgcata agtaacaaga tcggtggcga cctaataagt
     7561 accgctcttt ggaagggcgt acgtttaagc tatctgcttg atatggctgc aattaagcca
     7621 aacgtaaaat atgtcgtgtt tagatgcgcc gacggttatg atgttggaat accaatagag
     7681 aggtcccaaa tggaagggac tatactggct tatgatatga attatacacc tcttacgccg
     7741 aagcatggtt tccccgttag ggcaattgta ccaggtctct acggaatgat gaatccaaag
     7801 tggataacag aaattgaatt agtagataag gtttatgagg gctattggca gcgactagga
     7861 tgggcaaata acgctgagga caaaactggt tcgtccatat taattcctgg acaggcaccg
     7921 gcaagacaaa ggttcagaaa gttagacgaa actacagctt cctcttatgg gagtaaagtt
     7981 ccaattgcag ggatagcgtt tgcaggagac agaggaatag ccaagatcga agttagcact
     8041 gatggaggga ctacctggaa aacagcccaa gtaaaggatc ctctctcgca gtacacttgg
     8101 gtactttgga cagctggata tgtaccgcca aataaagaaa attattccgt tgtagttaga
     8161 gcgactgaca aaacaggaaa ggttcaaact actgaaatga gtcctccttt tcccaatggt
     8221 gccactggat atcacacaat aaccgtatag gaaggcatta ttaatttaga atttcaatta
     8281 tcagagtctt cgcttttcta tagtagtata aggtaaaagt cggcgaatct aatgttctat
     8341 cacatagtta aatcaaaagt aagaggccaa aaggattttg atgatttaga gattctaatt
     8401 aaaaataaac tttatctatt gttgtttcag gactttatac ttaatgtttg acaatacgca
     8461 ctaccacaga ttgtcgattt atgtcttggt tttactgttg gctcttttag ggataacatt
     8521 atctcttgtt tcgaatgccg cagaagattc tgataagcta aaacaggagt caatggaggc
     8581 cttcaaacaa tttaatgata tgacagagga gcaaagaaac tcagccttac agaacatgag
     8641 tagtacagat atgaatatgg ttatgatggg cgccgcacaa ataaacaacg aagtaaatga
     8701 aaccatacag gcgatgactc cgcctaatac agatatgtct tcaatatatg aactaagaag
     8761 cggtaacttt acaaattccg gaaacatctc aaaagtcagt gggatttcaa gaattctctc
     8821 tgtaaatgat atcgagttcc tacgatttga acactttaac ataacgaatg ggccagagct
     8881 tcatgtatac tttactaaca acggagattt ggtaaatagt aaagatctcg ggacactgaa
     8941 agggaatatt ggcccacaaa actacttctt aggtaatatt gctaatcagt atgacactgt
     9001 agtaatagca tccaagccat ttaagatggt gtatgcaaaa gcaatgttgg aaccatgaac
     9061 atattagatc tcaaataatt ctgaaaagga tttgcgaatg acacctaaag aatttctcat
     9121 ctcatatgta aaaaaattca acagtgggga tataagttcc ctgataagct tgtatgaaac
     9181 tgaagcatgt tttgtctctc gagaaggaga agtcgtaaaa ggcatagata atgtccgtca
     9241 acgtctacag agttttatca atatgaatgg cagaatagaa tcgaaagtaa ttggagtgat
     9301 tcatactaac gatatcgctc ttgtaaatac tgaatggtca ttcaacggca gcggacctga
     9361 cggtaaagca gttactatta ctggaaaagc tacagatgta ttacgtcaac aatcagatgg
     9421 cacttggcga attctaatag ataatccttg gggaactaat ctacaaatga ccgtttagaa
     9481 aaatagataa taataattag gattgaatcg atgaatctga accttcgtga tttgaaccct
     9541 gcatgtatta gggttctact acttggtatt tagatttttg ttttgcttca attgatgcat
     9601 aatcaatcaa aacttaagag tatgatttat tgtggtaaat cgtaagagtc caaattctat
     9661 tctttatttc ttctttagga atagaattgt tattgtgcct acgaccgcaa atattcctaa
     9721 tgctattata agattgccct gattgtctaa aatactcggt ggtgattggt gtggaacaaa
     9781 tacctgaaat gatgccaaat gaatagattc atttctgtcg agtcttaaca gcacctgatg
     9841 tgttccatca tcagggaata tgtagtcaac cgaaaaatcg cccttctgag tgcttatgtt
     9901 ctgaaacttg aacaatcttt gaccattggt aacagttact tgtgccaatg agtctccaat
     9961 atgcttgcca tttagtgaat ttgttacgct aaattgcaaa gtagtaaaag tatcaataat
    10021 tggcttttcg ggcctgtatg caaattggat tgtcaaatta tcattaggta ttttccatag
    10081 ctggacatta tttgaatcga ttatatgaga atatacggaa tgtaaaggta ggcttaacgc
    10141 agtaacatga atcaaaacaa aaatgataat tgtgttgaaa tatttcacaa attaaagcga
    10201 catatgtcag taattaaagt tgcctagctt tatggatatc tcgggtcctc agacgacggg
    10261 aatcgcatta ttaacaattc ggatccaaa
//
LOCUS       DASUMD010000090         6204 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1459110, whole genome shotgun sequence.
ACCESSION   DASUMD010000090 DASUMD010000000
VERSION     DASUMD010000090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6204)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6204)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6204
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1459110"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..220
                     /locus_tag="VFX26_02415"
     CDS             <1..220
                     /locus_tag="VFX26_02415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein"
                     /protein_id="HEX5573361.1"
                     /translation="IDKVDIEEGKVKIDLHLTSPFCPAIFGFKIAQDIRDNVYKIQGV
                     TESKVNVSNHFMADAINKQVNESKLPSK"
     gene            complement(244..1062)
                     /gene="sdhB"
                     /locus_tag="VFX26_02420"
     CDS             complement(244..1062)
                     /gene="sdhB"
                     /locus_tag="VFX26_02420"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase iron-sulfur subunit"
                     /protein_id="HEX5573362.1"
                     /translation="MSNTENKYEETITLKVYRENRGQKTGSHYDNFEVPYKRWTTVLD
                     ALLYAKSYIDPSVAIRYSCRMASCGSCGMKINGIPRLACYTKISELETSTIECEPLAN
                     FPIIRDLVTDFSLFFNHHKEMQPYIQSNENSENDTEKKTFSYYQSPEDVDKYLQFSYC
                     IKCGLCYSACPTVGTDLRFPGPQALAQLYRYYADTRDESKDRLKIVDDRHGIWRCHFA
                     GSCSKVCPKGVDPALGIQLLRSYMLGISKNNKEPAKKIEIITDEEEEENNDNNR"
     gene            complement(1072..1428)
                     /locus_tag="VFX26_02425"
     CDS             complement(1072..1428)
                     /locus_tag="VFX26_02425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase"
                     /protein_id="HEX5573363.1"
                     /translation="MESHRVLRESQVMKIHYVTGIAAIFVVAVHILMRLIVPFELSLE
                     YDYIIANYKNIIYVLILESILVLISVHGFNGMRIILLELRQTKRWENMVTVVTISAMI
                     ALIAYGTRTIILANGL"
     gene            complement(1431..1877)
                     /locus_tag="VFX26_02430"
     CDS             complement(1431..1877)
                     /locus_tag="VFX26_02430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase"
                     /protein_id="HEX5573364.1"
                     /translation="MKEIEQPSRNNLEGVKGWLNPSRYGWERISYWFQRLTGVFLLIY
                     FIGHVYETSTIVNGQNAWESFLELTQTVWGHLFLIMVIGASTFHSANGIRLIFTHAGI
                     GLGTPSRPDYPYSPSSLNYRQKSGIWIALILSAAAMFYGFNVLFGE"
     gene            complement(1877..3598)
                     /locus_tag="VFX26_02435"
     CDS             complement(1877..3598)
                     /locus_tag="VFX26_02435"
                     /EC_number="1.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     flavoprotein subunit"
                     /protein_id="HEX5573365.1"
                     /translation="MTDRISHDVLIIGTGLAGLRAAISCATRNGRLNIGVISKVQVMR
                     SHSVSAEGGTAAVLFSDEGDNIESHIYDTIRGSDFLCDQDVAEKLAHEIPNEIYQLDK
                     WGMPWSRRDDGRIDQRKFGGYSFPRATYAQDKVGFYEMQSLYDTCLKYDNIHFYNEWF
                     CTSILDDGNNNFAGVTAIEMKSGNFNVFKSNSGIIATGGAGRLYSFSTYAYSSTPDGL
                     DMVYRSGLALKDMEFVQFHPTGILPSGILITEGARGEGGYLINNLGERFMKNYAPEKL
                     ELAPRDVVSRSMIKEIENGRGFKHETGVDCLKLDLTHLGEEQVKERLAGIREIGIKFS
                     GVDIISEPIEIRPVCHYMMGGIHTNIDGQTEMNGLWSAGEAACNGLHGANRLGANSTS
                     ECLVWGSITGRLAADYAEKKKEKTFSTAATKIQAEEKRIFDGIFRGRGQVNPYDIRKE
                     FTDLMDIKAYIFRNENDLVQGLNKVRELRKLTWKHVDDSAKEYNTNFINVMEIDSLLR
                     IGEIIIVGALNRQESRGAHSRTDYPNRDDVNFLRHTLAYYKGDDEPQFSWHPVTLTRY
                     VPAERKY"
     gene            3751..4008
                     /locus_tag="VFX26_02440"
     CDS             3751..4008
                     /locus_tag="VFX26_02440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573366.1"
                     /translation="MTLNCTGKVLLTTNTSDDGIAQAAKKKLIENGINESQIMLGHDI
                     QVLEIDDLYVSYDPPDLVVRMVYDKKENGMIKMKNIRMIKI"
     gene            complement(4052..5323)
                     /gene="hisS"
                     /locus_tag="VFX26_02445"
     CDS             complement(4052..5323)
                     /gene="hisS"
                     /locus_tag="VFX26_02445"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: protein motif:HMM:TIGR00442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004821 - histidine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006427 - histidyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HEX5573367.1"
                     /translation="MIVKLDLPRGMRDLQYEELRNISFIRDKFVETAEIFDFNQIEPS
                     TLELLSTLEAKSGPSIIQETYSFRDKGGRDVALRFDLTIGLSRFVSVRRDLKLPAKLS
                     SFGGVWRYDEPQLGRYRYFHQWDVEIFGSPDVDADAEVIDFVSSFLSKLKIDFVILIN
                     HRSILEEYLSKYLGITNSSVMSEMMRAIDKLSKKSSEQIINEYSGKLNPIKLQEFIKF
                     VSVTDRPDKILDNDKLMEFKSSDKLRGLIDSLKCRRVKNMMVDLRIVRGLDYYSGLVF
                     EAKELSSQAGSLVGGGRYDKLTEAFGRKDLFATGAAGGVERILSAIKYKSTKILKKPL
                     IYVAYDSKKEKKHALEVVSILRDLGYSTDYDINGRTISKQFHEASLKNALAIIIVSLD
                     EFKKGNVTIKTGLKEQKQSITEIAKYLDQMI"
     gene            5350..5820
                     /locus_tag="VFX26_02450"
     CDS             5350..5820
                     /locus_tag="VFX26_02450"
                     /inference="COORDINATES: protein motif:HMM:NF014058.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="archease"
                     /protein_id="HEX5573368.1"
                     /translation="MRLVIIKPGQKQRLLSGGFKYLEHITDAYIEAWGDSLEEAFSYA
                     ATAVINVMFEIKNVRGTSKTDFQVEGEDYLELLFNWLEKVLLLLSIDNQVISSFEIEI
                     SKLDTKYRLTAWGMAESIDLSRHNYRTEIKGITYHEMEVFQEDGQYKVRFILDL"
     gene            5950..>6204
                     /locus_tag="VFX26_02455"
     CDS             5950..>6204
                     /locus_tag="VFX26_02455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HEX5573369.1"
                     /translation="MSSNPNKPALVELSEKNFDEVIGGNKPVLVDFWATWCGPCQFML
                     PIFDKLAKKYEEKVVFGRLNVDDNQGVAMRFDVYAIPTFIV"
BASE COUNT         1902 a         1265 c         1017 g         2020 t
ORIGIN      
        1 tatagataaa gtagatatcg aagaaggaaa ggtaaaaata gacttgcacc tgacaagccc
       61 cttttgtcct gcaatatttg gttttaagat tgctcaagat atacgggata atgtctacaa
      121 gattcagggc gtaacggaat caaaggtaaa tgtaagcaat cactttatgg ccgatgccat
      181 aaacaagcaa gtaaatgaaa gcaaattacc gtcaaaatag ttcgtccggg ctaaaaattt
      241 gaactatcta ttattgtcat tattttcttc ttcttcttcg tctgttatta tttcaatttt
      301 ttttgccggc tctttgttat tttttgaaat accgagcatg taggacctta gcaactgaat
      361 acccaaggcc ggatctacac cttttggaca taccttgctg caagatcctg caaagtgaca
      421 tctccatatc ccatgtctgt catcgactat cttcaaccta tcctttgatt catcccttgt
      481 gtccgcataa tatctgtata gttgtgccaa ggcttgagga ccaggaaatc tcaaatccgt
      541 accgacggtt ggacatgcag aataacataa tccacatttt atacagtacg agaattgaag
      601 atatttatct acatcttctg gtgattggta atatgaaaaa gtcttttttt cagtatcatt
      661 ttcagaattt tcattgctct ggatgtaagg ttgcatttct ttatgatggt taaagaaaag
      721 cgagaaatca gtaaccagat ctcttattat gggaaaattt gctaaaggct cgcattcaat
      781 agttgatgtt tccaattcgg agattttagt gtaacaggcc aatctaggaa ttccgttaat
      841 tttcattcca cacgaaccac atgatgccat cctgcaagaa tatctaatgg caacactcgg
      901 atcaatgtaa ctttttgcgt acaataatgc atccaataca gtagtccatc ttttgtatgg
      961 tacttcaaaa ttgtcataat gtgatcctgt tttttgtccc ctattttctc tatatacttt
     1021 tagtgttatc gtctcttcgt atttattttc agtattactc aatattacaa atcacaatcc
     1081 attcgccaat attattgttc tagttccata agcaatcagc gcaatcattg cagaaatggt
     1141 gacaactgta accatatttt cccaacgttt ggtctgtctt agttccagca atattattct
     1201 cattccatta aagccatgaa cggaaatcaa tacaaggatt gactcgagga tgagaacata
     1261 aatgatattc ttgtaatttg caataatgta atcgtattca agactcaatt caaatggaac
     1321 aatgagtctc atgagaatat gaacagcaac cacaaaaatt gccgcaatac ctgtaacgta
     1381 atgaatcttc attacctgac tttctcttag cactctgtga ctttccatga ttactctcca
     1441 aacaagacat taaatccata gaacattgca gccgcagata gaatcagtgc aatccaaatt
     1501 ccagactttt gtctgtaatt taacgatgaa ggactgtaag gatagtcagg tctactagga
     1561 gtccccaatc cgatacctgc atgagtaaag attagacgaa ttccattagc ggaatgaaat
     1621 gtacttgctc ctattaccat aattagaaac agatgtcccc acactgtctg agttagttct
     1681 aaaaatgatt cccacgcatt ctggccgttg actattgtac ttgtttcata cacatgtcca
     1741 atgaagtata tcaggagaaa aacccctgtt aatctctgaa accaatatga aatacgttcc
     1801 catccatatc ttgatggatt gagccatccc tttacccctt ccaaattatt gcgacttggc
     1861 tgttcgatct ctttcatcag tattttctct ctgctgggac ataccttgtt aatgttaccg
     1921 ggtgccatga aaactgaggt tcatcatcgc ccttatagta tgctaatgtg tgccttaaga
     1981 aattaacatc atctctatta ggatagtccg tcctggaatg tgcacctctt gattcttgcc
     2041 tgttcaatgc acctacaatt attatttccc ctattctcaa taatgaatct atctccatta
     2101 catttatgaa atttgtgtta tattcctttg cgctatcatc aacgtgtttc caagttaatt
     2161 ttctaagctc tctaacttta tttaaaccct gaacgaggtc attttcattt ctaaaaatat
     2221 atgccttaat atccatcaaa tcagtaaact cctttctaat atcatacggg tttacctgac
     2281 cccttcctcg gaagatccca tcaaatattc tcttttcttc tgcctgaatc ttggtagctg
     2341 ctgtgctaaa cgtcttctcc tttttcttct ctgcataatc agctgccaac cttcccgtta
     2401 tacttcccca gactaaacat tcagaagtag aatttgctcc aagtcgattt gccccatgga
     2461 gaccgttaca tgcggcctca cctgccgacc acaagccatt catctccgtc tgaccgtcaa
     2521 tatttgtgtg aattccaccc atcatgtaat gacatactgg ccttatctct atgggttcac
     2581 ttattatatc aacacctgaa aatttgatac ctatttctct aattccggct aatctctcct
     2641 ttacttgctc ctctcctaaa tgcgtgagat ctaatttgag acaatcaaca ccagtttcgt
     2701 gtttaaatcc tcttccattt tcaatttctt ttatcattga tctggaaact acgtcacgag
     2761 gagcgagttc taatttttca ggcgcatagt ttttcataaa tctttcaccc aggttattaa
     2821 taagatagcc tccttctccc ctggctcctt cagttataag aataccggat ggaagaattc
     2881 ctgtaggatg gaattgaaca aattccatat cctttagcgc taaaccagat ctgtaaacca
     2941 tatccagacc atcaggagta gaagaatatg cataagttga aaaactgtaa agcctgccag
     3001 ctccaccagt ggcaataata ccagaattag atttgaaaac attgaagttg ccgcttttca
     3061 tctctatcgc agtaacacct gcaaagttat tgttcccatc atctagaatt gaagtacaaa
     3121 accattcatt gtaaaagtgt atgttatcat attttagaca cgtatcatat agtgactgca
     3181 tttcatagaa tccgacttta tcctgtgcat atgttgccct tgggaaagaa tatcctccga
     3241 atttcctctg atcaatccta ccatcatccc ttcttgacca gggcattccc catttgtcca
     3301 attgatatat ttcattgggt atttcatgag caagtttttc ggcaacatcc tgatcacaaa
     3361 gaaagtcact acctctaata gtatcataaa tatgggattc aatgttgtca ccctcatcag
     3421 aaaacaggac tgctgcagtt ccgccttccg ctgaaacgga gtgtgaacgc attacctgaa
     3481 cttttgaaat tactcctatg ttcagtctcc cgtttctcgt agcacaggaa atagcagctc
     3541 gcaatcctgc caaacccgtg cctatgatca ggacatcatg tgaaatacgg tctgtcaaat
     3601 aattattgca acctcaacca ttatccttta cgttgacgtc tctatctagt aataaatata
     3661 ttattctttt tttattggga taaaaaaata taaaaatgaa atatgaagga agacacagtt
     3721 tatttgtgag gaaccgtttt ttcattaaag atgaccctga attgtactgg caaggttctt
     3781 ttaacaacca atacttcaga tgatggcatt gcacaagccg caaaaaagaa attgatagaa
     3841 aatggcataa atgagtcaca gataatgtta gggcacgaca tccaggtact cgaaatagat
     3901 gatctctatg ttagctatga cccaccggat ttagtagtga gaatggtata tgataagaag
     3961 gaaaacggta tgataaagat gaagaatatc cggatgatta agatttagcg aaaataattg
     4021 acagttaaac gaataagtat ttgaaagaac tttaaatcat ctggtccaag tattttgcaa
     4081 tttcagtaat actttgcttt tgttccttta atcctgtttt aatggtaaca ttaccttttt
     4141 tgaattcgtc aaggctcact attatgattg cgagggcatt ctttaaagat gcctcatgaa
     4201 actgtttact gatagtcctt ccgtttatat catagtcagt agaatatccg agatctctta
     4261 aaattgaaac tacttctaac gcatgttttt tttctttctt cgagtcatac gcgacataaa
     4321 tcagtggttt ttttaatatt ttggtagatt tgtatttaat tgcagataat atcctttcca
     4381 ctcctcctgc agcaccggtt gcaaacaaat cctttcttcc aaatgcctct gtcaatttgt
     4441 catatctacc accccctact agtgatccgg cttgtgaaga aagttcttta gcttcaaata
     4501 ccaacccgga ataataatca agaccacgta caatcctaag gtctaccatc atgtttttta
     4561 cccgtctaca ttttagggaa tcaatcaatc cccgtagttt gtctgacgat ttaaattcca
     4621 ttaacttgtc attatctaat attttatctg gtcgatcggt aacggaaaca aatttgataa
     4681 attcttgcaa tttgataggg ttgagctttc ccgaatattc attaatgatt tgctctgaac
     4741 tttttttaga taacttatca atagccctca tcatctcact catcacagaa ctatttgtta
     4801 tgcctagata ttttgagaga tactcttcta atattgatct gtgatttatc aagataacaa
     4861 aatcaatttt caatttactc aaaaatgatg aaacaaagtc tatcacttcc gcgtcggcat
     4921 ctacatccgg ggatccaaat atttcaacgt cccattgatg aaaatatcta tacctgccaa
     4981 gttgtggctc gtcataacgc cagactcctc caaatgacga taattttgct ggaagcttaa
     5041 gatctctacg cacagaaaca aatcttgaca gtccgatagt tagatcaaat cgtaatgcaa
     5101 cgtctctgcc tcctttatcc ctaaaactat atgtttcttg aattattgat ggcccacttt
     5161 tcgcttcaag agtagatagt agttccaaag ttgatggttc aatttgatta aaatcaaaga
     5221 tttctgcagt ttcgacaaat ttgtctctga taaaggaaat atttcttaat tcctcatatt
     5281 gcaaatctct cattcctctc ggaagatcta acttcacaat catgaggatc gtgagtgatc
     5341 atttagattt tgcgattagt tataataaaa cctggacaaa aacaaagatt attgtctggc
     5401 ggtttcaaat atcttgagca cataacagac gcatacattg aggcatgggg cgatagtttg
     5461 gaagaagctt tttcctacgc cgccacagct gtaattaatg taatgtttga aatcaaaaat
     5521 gtcagaggaa caagcaagac tgatttccag gtagaaggtg aagattatct agaattattg
     5581 ttcaactggc tagaaaaagt gcttttactt ctatctatag ataatcaagt aatatcaagt
     5641 ttcgaaatag agatctccaa gctggataca aaatatcgtc taactgcatg gggaatggct
     5701 gaatcaatag atctatcaag acacaattac aggactgaga taaagggcat tacctatcat
     5761 gaaatggaag ttttccagga agatggtcaa tacaaagtca gattcatact agatctctaa
     5821 ccaatgaaac tagattcaag atattttgat tagagagcgt tgattcttgt tgactatcta
     5881 acaacttttg attttgaaaa acagtgcatt acaagattta aatatcaatt ccgatcataa
     5941 attgtaacaa tgagttcaaa tcccaataaa cctgcactag ttgaattgtc tgaaaagaac
     6001 tttgacgaag ttatcggtgg taataaaccg gttcttgtag atttttgggc aacttggtgt
     6061 ggcccatgtc agttcatgct tccaatcttc gacaagctcg caaaaaaata tgaagaaaaa
     6121 gttgtttttg gcagactaaa tgtagatgat aatcagggag tcgcaatgag atttgacgtt
     6181 tatgcaattc ccacgttcat tgtc
//
LOCUS       DASUMD010000091         8835 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1238109, whole genome shotgun sequence.
ACCESSION   DASUMD010000091 DASUMD010000000
VERSION     DASUMD010000091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 8835)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8835)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8835
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1238109"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..196
                     /locus_tag="VFX26_02460"
     CDS             <1..196
                     /locus_tag="VFX26_02460"
                     /inference="COORDINATES: protein motif:HMM:NF028194.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573370.1"
                     /translation="VHLKQLPVGFPTENNFEFVRVSIPDPKEGEFLVRNIWKSVDPYM
                     RGRMRETKSYISSFQLNKPC"
     gene            501..1289
                     /locus_tag="VFX26_02465"
     CDS             501..1289
                     /locus_tag="VFX26_02465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573371.1"
                     /translation="MSSKIAADLTSIAGSLFWGFVVSVPLLLGCLLALTTRLSKRTIA
                     VIMAFGSGVLVASLAFSLMEEAFKMSQSIPPVIIGFISGGLSYTIANYYLSKRSLQGN
                     IRHRKKSHGTEAGGGENISGSAILAGSVMDNIPENMALGISLAIGGSIDVVLLAAIFI
                     SNFPEGLSSSEGMRSSGRSKRSILFLWILAVSVGTVSSAIGFTVSSYTEPKILSIALS
                     FAAGAILVMLGESMIPEAYEQGGASRVGLAIMAGFALAFILGNV"
     gene            complement(1331..1663)
                     /locus_tag="VFX26_02470"
     CDS             complement(1331..1663)
                     /locus_tag="VFX26_02470"
                     /inference="COORDINATES: protein motif:HMM:NF015004.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine dimer DNA glycosylase/endonuclease V"
                     /protein_id="HEX5573372.1"
                     /translation="MRIWDIPANKLCTKHLLGEHSELHGLWNILTQNKSGYSRHPETV
                     RWKGKLAALFLRHEELALEMKKRNYQHKSDLNRVFATGLSVQEKFVNSYDEQLEILKG
                     KGCKCKIT"
     gene            complement(1692..2162)
                     /locus_tag="VFX26_02475"
     CDS             complement(1692..2162)
                     /locus_tag="VFX26_02475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573373.1"
                     /translation="MIFIGAEIILSGLISGIVATAVMTVTEIPSWRKWRLLGVFEWHE
                     NQMLSSRFFHIPRNKLSFKYIFFLHFLNGSLGGIVFALILSIHIIPITWNYTLMLSVS
                     YGFALWIATLAPIHKPVTGHSVWNHQLGHLPSIASLIGHLIYGFVLGIVIIIYY"
     gene            complement(2159..3037)
                     /locus_tag="VFX26_02480"
     CDS             complement(2159..3037)
                     /locus_tag="VFX26_02480"
                     /inference="COORDINATES: protein motif:HMM:NF014375.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin B12-binding domain-containing protein"
                     /protein_id="HEX5573374.1"
                     /translation="MKGHSYAYLVKNVWDKKNERVRQEIVKYLGRSSKVALEDFPKEF
                     QKDPNVVTFIACHSSDAEKNEFIMKEKMLELLIRNDTNSLVDIFERYSQFFGLVKFYE
                     RLLAPVMYKVGELWKAGKLNVATEHVCSNAAHTLVKIINEKFSRNPVVNRKALKILIC
                     TPEGEYHSLGCMVIESFLRSKGCCVSNIAPSVPSDAIIAFAGKFIPDLIMISITLDEN
                     IGAANKLINKILESRINVPPILVGGIGTESITIKSQNDKLKKVKFLKGIKLSGILPSI
                     REATKDRPKLSETITK"
     gene            complement(3173..4630)
                     /locus_tag="VFX26_02485"
     CDS             complement(3173..4630)
                     /locus_tag="VFX26_02485"
                     /inference="COORDINATES: protein motif:HMM:NF017206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HEX5573375.1"
                     /translation="MTTLKLLMNEMDSNDLRPNRLDMCTDNSIDRNKQKKIRILVSGA
                     SGFIGRRLVRRLLVSPSTTNWSIRCMTRKAQSLSSYFQNDGDNLEFVQADVQNYPELV
                     KALTGVDIAFYLIHSMEGSSKEWKEFAERDRVAAENFAQAVNEAGVSRVIYLGGLTYA
                     PEQELSNHMQSRKQVGEILKKSNAAVTIFRAAVILGQGGGSFQMLQYLVERLPLMVCP
                     KWVLTKSQPIAVDDVVEYLVRSIETNDTKSKTFDIGGPEILSYLDMMRRYSNTLKKSI
                     KIIIIPFLTPRLSSYWVDLITPVKASLARPLIDSLRHEAIVKDNSIGEIIPLRLKNFE
                     NSIKIARSEQTENERIIQKERTSSCLNKRILFASTIAMAIVGFTYYFLDARIEIFQPI
                     WVALAGLWYFGIAFSIFFIHKGARLGSIIAGIIGWITLTFWLLDNFYLIFETSVLASP
                     PGYVMTIRNCIGAAIASLVIASSHNLFHKIRVHCL"
     gene            complement(4665..5267)
                     /locus_tag="VFX26_02490"
     CDS             complement(4665..5267)
                     /locus_tag="VFX26_02490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573376.1"
                     /translation="MNDLDKAMELQKIDSTPKMIIVYCTLAGLISAMLISGLLAVIDF
                     ASGTPSGTFFAVIGLSLGFNDPASAQYVGLGLHTLTGTVAGNIFGQIALFWRKLIPYN
                     MKRGVSFGLLLGISLWAVLFAPLATFGIQPKLDTFMITEANTYAHSIANHFAGLYYFV
                     LGASLLFHLVYGAIFGLLAGRMTGVKLSTRKLIDVRIKGN"
     gene            5869..6942
                     /locus_tag="VFX26_02495"
     CDS             5869..6942
                     /locus_tag="VFX26_02495"
                     /inference="COORDINATES: protein motif:HMM:NF019352.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HEX5573377.1"
                     /translation="MLKLTNVLLNIPTMFTTTFQKLAAYVLVTIFLILTIYSISDFTY
                     QQIKTIYAQNQNNSNSNNNGSISGNQEEGFRPTKKITIILENTEIEIAPGEKIKTWAF
                     NGTVPGPTVRLTEGESASILFVNNGTFPHTIHFHGIHDDKNDGVLPVIMPGKSYTYNI
                     TAEPAGALMYHCHVPPVSEHIRMGMYGAFIIDPKDKPLKPAKEYYMVMSEFSTDEKNV
                     TKFLANHYPINGYSYQYMSYPLEITQGDLLRIYLVNMGITISSPMHLHSTIFDVYPSG
                     LLSNKPYKAQTIQVAPGDAAIIEAKWKYPGSYMFHSHGFQEEHGNMGRILVKENINST
                     ELTKSVSMFDWQYDLQKKLQQQK"
     gene            complement(7432..8088)
                     /locus_tag="VFX26_02500"
     CDS             complement(7432..8088)
                     /locus_tag="VFX26_02500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573378.1"
                     /translation="MLTIKSRIILVGVSLLSSLALTLMTNYDMTYAQSPETTTKLVHA
                     GEGNATSMVMLFVPQKIEIKTGESVTWNNPTSVAEPHSTTFIQDGKYFPPPAVPFSVA
                     NSTNLKPLATDPNIDPLIIPGSNQNGTISVVIDNARNYIPVSIDSTGKNVTYLPPNAN
                     YTFDGTEKYVNSGWIWPEGQSPPGAPPISKFTVTFQNPGMYSYLCTLHPWMTGTVTVK
                     "
     gene            8390..8677
                     /locus_tag="VFX26_02505"
     CDS             8390..8677
                     /locus_tag="VFX26_02505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573379.1"
                     /translation="MEESMLPTKIRQEEDRREVEIIKFIKQNPGSITNQVIKYMEKKG
                     SSKNTTLKIINELIEGKRIRDEHVKLNRFHKLFYDDNNDFDLINNKLTKIE"
BASE COUNT         2840 a         1592 c         1589 g         2814 t
ORIGIN      
        1 ggttcatctg aagcagcttc cagttgggtt ccctactgaa aacaactttg aatttgtccg
       61 agtaagtatt cccgatccaa aagaaggaga gttcttggta cgaaacatat ggaagtctgt
      121 agatccttac atgcgcggac gaatgaggga aactaaaagc tacatatcat catttcaatt
      181 aaacaaacct tgctaggaag agtgatcagc taattgtgac acatgcgtta ctggccctga
      241 gggatgagaa tcattttttg acatattttt ttttggatca cttttcacaa gaattcaaaa
      301 gaataattag aaacacgtag aaagtagttc agggcttggc cggacacata ttactagatt
      361 tataatttat tatgaattct caataagagc aatgcataac cctgaatatg ctaccaatca
      421 taaaatgcct ttatagacag gctattgata ttgtaaaata tgaaatatca aaccactaag
      481 ctaaatatgt atgaagggag gtgagcagca agatagcagc agaccttacc agcatcgcag
      541 gctctctatt ttggggattt gttgtcagtg tacctctact gttaggctgt ctactggcac
      601 taactacaag gctttccaag aggactatag ccgttataat ggcttttggg agcggagtgc
      661 ttgtggcatc tcttgctttt tccttaatgg aagaggcatt taagatgtca cagtcaatac
      721 ctccagtaat cattggattt atctctggtg ggttatctta tactatagca aattactatc
      781 ttagcaaacg ttcactgcaa ggcaatatca gacacaggaa gaaatctcat gggacagaag
      841 ctggtggggg tgaaaatatc tctggttccg ccatattagc aggttcagtg atggataaca
      901 ttcctgaaaa tatggcactt ggtatttcgt tagcaatagg gggatcaata gatgttgttc
      961 ttctggcggc tattttcatt tccaattttc cagagggact atcgtcttca gaaggtatgc
     1021 ggtctagtgg gagaagtaaa agatcgatac tttttttatg gatacttgct gtatctgtag
     1081 gaacagtttc ttcagcgatt ggctttacag tgtcatcgta tacagaacct aagatactgt
     1141 caatagcttt gtcatttgcc gcaggtgcaa ttttagtcat gttaggagaa tcgatgattc
     1201 ctgaagctta tgagcaagga ggagcgagta gagtaggcct tgctataatg gcaggattcg
     1261 cacttgcttt catattagga aatgtatagt catactttgt tagaaacatg aaacgccaaa
     1321 agatctggct ttaggtaatt ttgcacttgc atcctttgcc ctttagtatc tctagctgct
     1381 cgtcatatga gtttacgaac ttttcctgaa ctgacaggcc agtagcaaat accctattca
     1441 agtcgctttt gtgttgataa tttcttttct tcatttctag ggcaagctct tcatgcctaa
     1501 ggaatagtgc tgccaatttc cccttccatc ttacggtttc agggtgtctg gaataaccag
     1561 atttattttg tgtcaaaata ttccacagcc catgcaattc actatgttca ccaagaagat
     1621 gtttcgtgca taatttattt gcaggaatgt cccagattct catatctcta ttatttcacc
     1681 aatttgagaa gttagtagta tataattatt acaataccta atacaaatcc gtatatcaaa
     1741 tgaccaatga gactggcaat tgaaggtaaa tgacctaact gatgattcca tacagaatgc
     1801 cccgttaccg gcttatgtat tggtgcaagt gtggcaatcc agagagcaaa tccatacgac
     1861 actgataaca tcaaggtgta attccacgta ataggaatga tatgaattga tagtatcaat
     1921 gcaaacacaa tacctcccaa tgatccattt aggaaatgca gaaagaaaat atatttgaaa
     1981 ctaagtttat ttctaggaat atggaaaaat ctactagaaa gcatttgatt ttcatgccat
     2041 tcaaatactc ccagcaatct ccattttctc catgatggga tttcggtcac tgtcattact
     2101 gctgtagcta ctattcctga aataagacca ctaagaataa tttctgcgcc tatgaaaatc
     2161 attttgtaat tgtttcacta agttttggtc tgtcttttgt agcttctctg atactgggaa
     2221 gaataccact taactttatc cctttcaaaa attttacttt tttgagttta tcattttggc
     2281 tttttattgt tattgattca gttccaatac caccaactag tataggagga acatttatcc
     2341 ttgactctaa tattttattt atcaatttat tagcagcacc aatattttcg tccaaagtta
     2401 tcgagatcat aatcaaatca ggaataaatt tacccgcaaa ggctatgatt gcgtcagaag
     2461 gaacagaagg tgcaatgttg gagacacaac agcctttgct tcttagaaaa gattcgatta
     2521 ccatgcatcc taaactatga tattcacctt caggtgtgca tatcaagatc ttgagagctt
     2581 ttctattcac tacaggattc cttgagaact tttcatttat tatttttaca agtgtatgcg
     2641 cagcattact acagacatgc tctgttgcga cattcagttt accagccttc cataactctc
     2701 ccaccttgta catcacagga gcaagcaatc tttcgtagaa cttaacaagt ccaaaaaact
     2761 gagaatatct ctcaaatata tcaaccagag aattggtatc gtttcttatg agaagctcta
     2821 acattttctc tttcatgata aattcgtttt tttctgcatc cgaagaatga caagcaataa
     2881 acgtaactac attggggtcc ttttgaaact cttttgggaa atcctcaagt gctactttcg
     2941 aagacctacc cagatattta acaatttctt gtcttactct ttcattcttt ttatcccata
     3001 cattttttac aagataagca tatgaatggc ctttcacttt tttatctctg ataaatacca
     3061 aacttataca cttgatcccc taataaagaa cgcagcaagt aatcgattca tatgaagttg
     3121 tcggcattcg taagtaaatg acttttccat gtttaaacat ttttaacata tactaaagac
     3181 agtgaactcg tatcttgtga aacagattgt gagatgaggc aataaccaaa cttgctattg
     3241 ctgctcctat gcaatttcga attgtcatga catatcctgg tggtgatgca agaactgatg
     3301 tctcaaatat tagatagaaa ttatcaagga gccaaaatgt caatgtaatc catccaataa
     3361 tcccagctat tattgaccct aatctagcac ctttatgtat aaagaatatt gaaaaagcta
     3421 taccaaaata ccaaagacct gccaatgcca cccaaatggg ctgaaagatt tctattctcg
     3481 catccaaaaa gtagtatgta aatcctacaa ttgccatggc gatagtagat gcaaataata
     3541 ttcgtttatt caaacatgaa gatgtcctct ctttctggat aattctctca ttttcagttt
     3601 gctcactcct tgctattttg attgagtttt caaagttctt taagcgaagt ggaatgatct
     3661 caccaataga attgtctttt actattgcct catgtctgag actatcgata aggggccgtg
     3721 caagcgatgc tttcacaggt gttatgagat caacccaata agaagaaagt cttggtgtta
     3781 agaatggaat gataatgatt ttaatcgatt ttttgagagt attgctatat cgtcgcatca
     3841 tatccaagta agagaggatt tccggtccac cgatatcgaa tgttttggac tttgtatcat
     3901 tcgtttctat agatctgacc agatattcga ctacgtcatc aaccgcaatg ggttgagatt
     3961 ttgtcaatac ccattttgga cataccatca aaggtaacct ttctacaaga tattgcaaca
     4021 tttgaaaaga tccgcccccc tgtcccaaaa tgacagctgc tctaaatatt gtaacagcag
     4081 cattagattt ttttagaatt tcacctacct gttttctact ttgcatatga ttggataatt
     4141 cttgttcggg tgcatatgtt aagcccccaa gataaataac tctcgatact ccggcttcat
     4201 tcactgcctg agcaaaattt tctgcagcaa ctctatcacg ctcagcaaat tctttccatt
     4261 cctttgacga tccttccatc gagtgtataa gataaaaggc aatatcaaca ccagttaatg
     4321 cctttactaa ttcaggatag ttttgaacat cagcttgcac aaattccaaa ttgtctccgt
     4381 cattctgaaa atagcttgaa agtgattgtg cttttcttgt catacatctt atactccagt
     4441 tcgttgtgct aggtgagacc agcagcctcc taacaagcct gcggccaata aacccacttg
     4501 ccccagagac taggatccta attttctttt gcttgtttct atcaatactg ttatcagtac
     4561 acatatcgag tcggttcggt ctcaagtcgt ttgaatccat ctcattcatt agaagtttca
     4621 acgtagtcat cttgcgctcg tattttgatt taaaggagaa tcgactaatt ccccttaatt
     4681 ctgacgtcta taagcttacg cgttgagagc tttactcctg tcattcttcc tgccagtaat
     4741 ccaaagatag cgccatagac tagatggaat agtaatgatg ctcccaatac aaaataatac
     4801 agtccggcaa aatgatttgc tatcgagtgt gcataggtat tcgcctctgt gatcatgaat
     4861 gtatctagtt taggttgaat tccaaatgtt gctaacggag cgaacaatac tgcccataaa
     4921 gatatcccaa gcagtaaccc aaaagatact ccccttttca tgttgtatgg aataagtttt
     4981 cgccagaata gtgctatttg tccaaatatg ttaccagcta cagtaccagt caatgtatgt
     5041 aatcctaaac caacgtattg agcggaggcg ggatcgttaa aacccagtga taatcctatt
     5101 acggcaaaaa aggttccgct tggtgtacct gatgcaaagt ctatgactgc taacagtccc
     5161 gaaattagca tagctgatat caatcccgca agtgtacagt atacaattat catttttggt
     5221 gtactatcta ttttttgtag ttccatagct ttatcaaggt cattcatgta tttaaactaa
     5281 tgctaacttt ttgatctagt gctaacttat taagtcctaa attaattaga taaaccaata
     5341 tctaaaactg tattcttcaa ggtaaaatct ggaaggttaa tcattttgat ataaattcgg
     5401 gcccggaggg atgaatctgg aatttcgagt ggatcccaat tcgaatttct aatttctctt
     5461 ggcaagaata aagaagtgaa gaacactagg cgctccgatg aagagttcat cgatacccac
     5521 gacataatcg gttctaaatt aggattctga tatgaaaatg gactgttaag ctttaaggtt
     5581 ttctttaatt aaggagtttg catcagcttt tttatcaatt gtcggtatag tctttcttca
     5641 ataacaattt ttatttcttt ccttaaccat gtcagaaatt gcttcagttg aaagattgtc
     5701 acgcttttta tcgttacact tttgatacgc tagacgatat taaataattc tgtatagaaa
     5761 taaaataaat cctatgacat catatatgaa ttccatcttt tctttgcatt agaaacatag
     5821 attgcttatt tgtaaaatta ttcctctata tctattaaac tttaggaaat gcttaaatta
     5881 acaaatgtat tgctaaatat acccactatg tttacaacaa ctttccaaaa gttagctgcg
     5941 tacgtacttg tgactatatt cttgatattg accatatact caatatccga tttcacttat
     6001 caacaaataa agactattta tgctcaaaat caaaataata gtaatagtaa taataatggc
     6061 agtatatcgg gaaatcagga agagggattt cgtcctacca agaaaattac aattatttta
     6121 gaaaatactg aaatagaaat agcacctggt gaaaaaataa aaacatgggc atttaatgga
     6181 accgtccctg gacccacagt gagattgaca gaaggagaaa gtgcgagtat tttatttgta
     6241 aataatggta cttttccaca taccattcat tttcatggta tccatgatga taaaaacgat
     6301 ggtgttttac ccgtgataat gcccggaaaa tcttatactt ataatataac tgcagagcca
     6361 gctggtgcac taatgtatca ttgccatgta cctccagtgt cagagcacat tagaatggga
     6421 atgtatggag ctttcattat agatcctaaa gacaaaccat taaagcctgc aaaagagtac
     6481 tatatggtaa tgagtgaatt tagtaccgat gagaaaaatg ttactaaatt tctagctaac
     6541 cattatccaa taaatggtta ttcgtatcaa tatatgagtt atcctctaga gataacacag
     6601 ggcgacctgc ttagaatcta tcttgttaac atgggaatta ctattagctc accaatgcat
     6661 ctgcatagta caatttttga cgtatatccg tcaggactac tttctaataa accgtataaa
     6721 gctcaaacta tccaagtagc tcccggtgat gcggcaataa ttgaagctaa atggaagtat
     6781 ccaggtagtt acatgtttca tagtcatgga tttcaagagg aacatggcaa tatgggacgt
     6841 atcttagtca aagaaaatat taattctaca gagttaacaa aaagtgtatc tatgtttgat
     6901 tggcagtatg atttgcagaa aaaactacag cagcaaaaat aatagatgac gatattatac
     6961 tggcaggatc aaccctatac ttataattga catgggaata aggaaatttt ttcatctctc
     7021 gtattgctta aggaattaga aaaaaactgg cattacctta tgaaaaaatt agacattagt
     7081 agggaacaaa aataggtaaa tcgtagaata ttgcataaaa aaaaagtaca ggcaacaatg
     7141 aaaattagtg ctaatttcca atgaaatgtt ttgaaatctc atttttcaat ttcttaatat
     7201 tctagaatcc gattagacaa ctaattttat tacgggctcg tcgggatacg actgaatatt
     7261 cagtcgtaac ttaattagga atcttaatac tagaatttta tcggatgcac agaatataaa
     7321 gatgggctgt cgattgtgaa tcatatctga catgattttt atgttcgtat gccatatgtt
     7381 atctaaaatg aattaagatc gttaccaact catgggatag gattgaattg gttacttgac
     7441 tgtgacagtt cctgtcatcc atgggtgtaa ggtacataaa taagagtaca taccaggatt
     7501 ttggaaagtg actgtgaatt tactaattgg aggagcgcca ggcggagact gtccttcagg
     7561 ccaaatccag ccagaattaa cgtatttttc cgttccatcg aaggtgtagt ttgcgtttgg
     7621 aggtagatat gttacgttct tacccgtaga atcgatcgat acaggaatat aatttcttgc
     7681 gttgtcaatt acaacgctaa tagttccgtt ttgatttgaa ccagggatta ttaaagggtc
     7741 gatattagga tccgttgcca aaggcttgag atttgtagaa tttgcaacag agaatggtac
     7801 tgctggaggg ggaaaatatt taccatcttg tatgaaagta gtagagtgag gctcagcgac
     7861 agatgtcgga ttattccaag tgacactctc accggttttg atctctattt tttgaggaac
     7921 gaacagcatt accatagaag tagcgtttcc ttctcctgcg tgaaccaatt ttgtagtggt
     7981 ctctggagac tgagcataag tcatatcata atttgtcatt agtgtaagcg ccagagaact
     8041 taacaggctg actccgacca aaattattct agattttata gttagcaata aatgcatgca
     8101 atttttccaa tatttaaaca tctgtaattt gtattgtgac attgcaaatt ttatatcggg
     8161 cccgtcggga tgcgaattgt taataattcg aatccaaaat tagaattcta aaaaaacaat
     8221 taaatcgcta gtcgctgaaa ttgtaaatta ctaaaatggg acgattggga tgaatctgga
     8281 ttttcaagtg gatccaaatt agaatttcta gtcactgcat ttgctttgac tctaacattt
     8341 gtaaacggca aatcctgatg actaaccctt atatgaggcc tgtacggcta tggaagaaag
     8401 tatgttacca acaaaaatcc gacaagagga agacaggaga gaagttgaga ttattaaatt
     8461 tattaaacaa aatcctggaa gtataacaaa tcaagtaatc aaatacatgg agaagaaggg
     8521 atcttcaaaa aacactactc tcaagataat taatgaactt atagaaggaa agagaataag
     8581 agatgaacac gttaaactga atcgttttca taaattattt tacgatgaca ataatgattt
     8641 tgatttaata aataataaac taacaaagat tgaataaatt attgatgtta tgaacaagcc
     8701 tttaaggaaa atacaacgac taattgaaga ccaacaaagt gagctgttac gattgacgaa
     8761 tgagaaagtt ccacttaaac aaagaagaaa atttgtttct gaggaattgt atggtttaca
     8821 aatcgattat caatt
//
LOCUS       DASUMD010000092         6611 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_132342, whole genome shotgun sequence.
ACCESSION   DASUMD010000092 DASUMD010000000
VERSION     DASUMD010000092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6611)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6611)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6611
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_132342"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            255..809
                     /locus_tag="VFX26_02510"
     CDS             255..809
                     /locus_tag="VFX26_02510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573380.1"
                     /translation="MPKRKIKEEKPRKKMGKKQILIPPIIVGIATLSGFVIMHFFPAP
                     SPVQVCLRSHHDTFNVHSKIVLEIDGQKKLLPDNVGKSKDGRECLRVIHTDKIGDQVH
                     MQFVRPVRLTLDDFMKIYSADNSTIQVVDNSTGSNVYQNITLADYNVDYSYFSEDRFV
                     KISNLTSSPPLSDTYLAKISLVSK"
     gene            842..1861
                     /locus_tag="VFX26_02515"
     CDS             842..1861
                     /locus_tag="VFX26_02515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate/isopropylmalate family dehydrogenase"
                     /protein_id="HEX5573381.1"
                     /translation="MTKSAVIIKGDGTGPELVNAMVHVLQECNSKIKLIPCEAGSEWW
                     TKSGGNSYISDEVWKLLEDSDACFKGPTTTIPTPNAPRSVAVSIRQRFNLYANVRPIK
                     TYKNSSNQLDFICIREATEGLYSGIEFKIGDDAAIAVRKITRKSCENVVRHGFKVATE
                     MKFKKIYVITKRNILKETDGIFWTAVQNIQSEFNEISVEEYYIDNMTQQLVKNPERFN
                     KSILLSTNLFMDIVSECASGHVGSIGNVYSGNYGDNYAMFEPAHGSAPKYAGSDKVNP
                     VATILSGALMAKYLGENEICNAIFAATEETINEGNCLTYDLGGSASLSKMANEIAKRS
                     RTHLR"
     gene            complement(1906..2424)
                     /locus_tag="VFX26_02520"
     CDS             complement(1906..2424)
                     /locus_tag="VFX26_02520"
                     /inference="COORDINATES: protein motif:HMM:NF017026.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HEX5573382.1"
                     /translation="MYLPSDDSIFLSNIVNHYHGQLALEIGTSSGTIFRELSKNFSIV
                     IGTDIDFNSLKHSLRMSKNDRLICCDAATALHNVKFDLIVSNPPYLPNAMNHTDRTVD
                     GGPTGIEVSIHFLTSAIDKLNNNGKILILVSSLSDKGKLDRFISKNNLIKKQIAQKDL
                     FYETLQIIELSN"
     gene            complement(2476..3204)
                     /gene="rsmA"
                     /locus_tag="VFX26_02525"
     CDS             complement(2476..3204)
                     /gene="rsmA"
                     /locus_tag="VFX26_02525"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: protein motif:HMM:TIGR00755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000179 - rRNA
                     (adenine-N6,N6-)-dimethyltransferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HEX5573383.1"
                     /translation="MGDDKRTYLGQHFLIDFSAITKIVESCNVGKKDVVLEFGTGYGY
                     LTKKIAELAGRVYTYEIDKELYCKAKSYLVNNSNVMIFNQDFFEADQFEFDYFVSNIP
                     YGRSKEIVKWLSLHEFGEAVIMVQKEFFEKLTASPGNADYSVVSVFSQYCFDIDPLFD
                     VDKNSFLPPPKIESKVIRLKRRRNKMNKEIIAGLEFLFSYRNKNAASLLNTKLYQNKK
                     IDQLNVETLVKICNELIESKQFRK"
     gene            complement(3194..3802)
                     /locus_tag="VFX26_02530"
     CDS             complement(3194..3802)
                     /locus_tag="VFX26_02530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF655 domain-containing protein"
                     /protein_id="HEX5573384.1"
                     /translation="MDSSSYNNFHNRHTSHDYNLHSHKFEEYAYVLDFALRGKSLTIR
                     GREGIIIQAIGENRLTLLELLGIQNGNFDIGERVYIGKEGRNKIISVLGKLQYDSISQ
                     SAKNELPSIVEKIVLANEERFVSYINTAQPITPRIHSLELIPGIGKTYMMSIINDREN
                     KKFTSFSDIQSRIGLKDIHKLVAKRIVEEITKETRMTLFVGR"
     gene            complement(3831..4163)
                     /locus_tag="VFX26_02535"
     CDS             complement(3831..4163)
                     /locus_tag="VFX26_02535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase Rpb4"
                     /protein_id="HEX5573385.1"
                     /translation="MTKITKKEMITLPNVKEILEAKKVDEMDQIQRWTYDYVNKFSKI
                     SRKQAQKLVSELVTQCGLTEEEAVEVVNILPSSLEEIRAFTFGWKKLILTSTSESILQ
                     KITAVHET"
     gene            complement(4177..4458)
                     /locus_tag="VFX26_02540"
     CDS             complement(4177..4458)
                     /locus_tag="VFX26_02540"
                     /inference="COORDINATES: protein motif:HMM:NF013336.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573386.1"
                     /translation="MPKSHGIRRKSRHIMTKGNMSKGLSHLLINYSIGDKVVVIIDPR
                     EHKTTPHRRFQGRVGYIKEIGRRTAKVGILVGDKQKFLQTKFNHIRPIK"
     gene            complement(4575..5552)
                     /gene="radA"
                     /locus_tag="VFX26_02545"
     CDS             complement(4575..5552)
                     /gene="radA"
                     /locus_tag="VFX26_02545"
                     /inference="COORDINATES: protein motif:HMM:NF003301.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair and recombination protein RadA"
                     /protein_id="HEX5573387.1"
                     /translation="MSEDGSEGVFDIETLKDIGPATKTSLREAGFRSIKDLVIRGPLD
                     IAEATGIAIEKCILLCNRAREILEDIGVFDKPFITATQIYEKRKLEYRIPTGSKNLDE
                     LLGGGIETRAITELYGEYGTGKTQICHTLCVTVQQNAAEGNLSRALYIDTENTFRPER
                     IAAIASARKFDPNKTLENVIVAKAYNSSHQEVIIQESPNIINLHNIRIMIVDSIVSHY
                     RAEFLGRSFLSERQQRINRLLHILLRIAETCKIAVVITNQIQSSPDAIFGDPNKATGG
                     NVMAHTSTYRLYLKKAGKNRIARMVDSPYHSEREILFALNDQGIGDPQK"
     gene            complement(5637..6443)
                     /locus_tag="VFX26_02550"
     CDS             complement(5637..6443)
                     /locus_tag="VFX26_02550"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: protein motif:HMM:NF014641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006780 - uroporphyrinogen III biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006782 - protoporphyrinogen IX
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HEX5573388.1"
                     /translation="MSKIFLNKTIAITRGEKDNTEFTRIVKEEGGTPITLPTMKLIPI
                     DPNHFHKKFSDICSKKYDYYVFMSPNSVDLFFKMVRENSLTQLLDEQLTNCDVIAIGP
                     STRKKLEANNISVKWQPSEYSTFGILKLLRKLSLKPGTRIMIPRSGASNSFLKDELDS
                     KGIILDEFYIYYPQVETINHTWIEFSKEIKNNNVQAVIFTSPSAVRYFFSIMQNILPN
                     FNGYIDNIDALISIGPNTTKELHLRDIFPIESKEHTINGTLQLAKRIFSK"
BASE COUNT         2001 a         1195 c         1113 g         2302 t
ORIGIN      
        1 tataactaaa tactcttttg ctttcgttga ttccaattat tcctattccc gaaagacccg
       61 gatttcctct gcttgaaccg tcgatataga tttcatacaa taaaattcaa tattggtgcc
      121 tacaatataa cattaacaat agccacttgg tcgattgaaa ctaccttgtt gctattacgg
      181 ttttgtagaa taccgttaaa cctttttcaa atatattaaa gtgcattttt aagattctat
      241 attggtgaca atgggtgcct aaaagaaaaa taaaggaaga gaaaccgagg aaaaaaatgg
      301 ggaaaaaaca aattttgata ccgccaatta ttgtggggat tgcaactctt tccggatttg
      361 tgataatgca cttctttcca gctccatctc cggtacaggt ttgtctcagg tcgcatcatg
      421 acacatttaa tgttcactca aaaatagtct tggaaattga cggacaaaag aaactattgc
      481 cggataatgt tggaaaaagt aaggatgggc gggagtgtct cagggtaata catacagaca
      541 aaataggtga ccaagttcat atgcaatttg tacgaccagt gagattgacg ttggatgatt
      601 tcatgaaaat ctattctgca gataacagta caattcaggt agtagataac tcaactggga
      661 gtaatgtata tcagaatatt actctggctg attacaatgt ggattattca tatttttccg
      721 aagatcgttt tgtgaaaatc agtaatctga caagttctcc acccctgagt gatacatact
      781 tggcaaagat ttcattggtc tccaaataga tataaataga cagtatcatt tttgataagg
      841 attgactaaa tctgctgtta tcataaaggg tgatggaaca ggacccgaac ttgttaatgc
      901 aatggttcat gttctacagg aatgtaattc gaaaattaaa ttaattcctt gtgaagcagg
      961 atcggagtgg tggacaaaaa gcggtggcaa ttcttatatt tctgacgaag tatggaaact
     1021 tttggaagac tctgacgcct gtttcaaggg ccccacaaca actattccaa ctcctaacgc
     1081 tcctagaagc gtggcagtaa gcattaggca aaggttcaat ctctacgcta atgttcgacc
     1141 gattaagact tacaaaaatt cttcaaatca gctggatttt atttgtatca gggaggcaac
     1201 tgaaggactc tattcgggaa tagaattcaa gataggtgat gatgctgcaa tagctgtgag
     1261 aaagataact aggaaaagtt gtgaaaacgt agtaaggcat ggatttaagg tagcaactga
     1321 aatgaaattt aagaaaattt atgttattac aaagaggaac atcttaaaag aaactgacgg
     1381 aatattttgg acagctgttc aaaacattca atcggaattc aatgaaattt ctgtagagga
     1441 atattatatt gataacatga cacaacaatt ggtaaaaaat ccagaacggt ttaacaagag
     1501 tattttgcta agcactaact tgttcatgga cattgtctct gaatgtgcat cagggcatgt
     1561 tggatctatt gggaatgtct attccggaaa ctatggtgat aactacgcaa tgtttgagcc
     1621 agcacatgga agcgcaccaa aatatgcagg ttctgataaa gttaatccag tagcgactat
     1681 cctatccggt gctttaatgg ctaaatatct cggagaaaat gagatttgta atgcaatttt
     1741 tgcagcaact gaagaaacaa taaacgaagg aaattgtctt acatatgacc tgggtggttc
     1801 agcatcatta agcaagatgg ccaatgaaat cgcaaaaaga tcaaggacac atttaaggta
     1861 acacagtaac tgattaagtg ttaatccatt catttattta gttattcaat tacttaattc
     1921 aataatttgt aacgtttcgt aaaatagatc tttttgggct atttgcttct ttatgagatt
     1981 atttttggat ataaatcgat ctaattttcc cttatctgat agacttgata ccagtatgag
     2041 gattttacca ttgttattca atttatcaat cgcgcttgtt agaaaatgaa ttgaaacttc
     2101 aatacctgta ggtccaccat caacagttct atcagtatga ttcatggcat ttggaagata
     2161 aggcggattt gatacaatca aatcaaattt tacattatgt aatgccgtgg cagcgtcaca
     2221 gcaaatcaat ctatcgtttt tcgacatcct taatgaatgt tttaaagaat tgaaatcaat
     2281 atcagttcct attacaatac taaaattttt tgacaattcc ctaaaaatgg tcccactact
     2341 ggttcctatt tccagtgcca actgaccatg atagtggtta actatattgg acaggaaaat
     2401 gctgtcatct gacggtaaat acaatataga cgaaatacac acgcaaattt ataattgtac
     2461 aacttttcaa attagttatt ttctaaattg cttactttca attaattcat tgcaaatttt
     2521 taccagggtt tcaacattca actgatcgat ttttttattt tgatacagtt tagtgtttaa
     2581 caatgaggct gcgttcttgt ttctgtaact aaaaagaaat tctagccctg caataatttc
     2641 cttgttcatt ttgtttctcc ttctctttaa ccttattacc ttggattcta tctttggagg
     2701 tggcaagaag gagtttttgt ctacatcaaa tagaggatca atatcaaaac aatattgaga
     2761 aaaaactgat acaacagaat aatctgcatt acctggagac gcagtgagtt tttcaaaaaa
     2821 ctctttttgt accattatca ctgcctcacc aaattcatgt aatgataacc atttcactat
     2881 ctctttggat ctaccatacg gaatgtttga tacgaaataa tcaaattcaa actgatctgc
     2941 ttcaaagaaa tcctgattga aaatcataac attcgaattg ttcacaagat aactctttgc
     3001 tttacaatac aattccttgt ctatttcata agtatatacc cttcctgcaa gctctgcgat
     3061 cttcttagtt agataaccat atccagtacc aaattctaat acaacatctt tctttccgac
     3121 attgcatgac tctactattt ttgtaattgc actaaaatct attagaaaat gctgaccaag
     3181 ataggtcctc ttgtcatctc ccaacgaata atgtcatcct agtctcttta gttatctcct
     3241 caactatcct ttttgctaca agtttgtgga tatcttttag tccgattctt gattggatgt
     3301 ctgagaaaga agtaaatttt ttattttctc tatcattgat tatgctcatc atgtatgttt
     3361 ttcctattcc tggtatcaat tctaacgaat gaattcttgg agttattggc tgggccgtat
     3421 taatatatga cacaaatcgt tcctcgtttg ccagaactat cttttctaca atagaaggta
     3481 gttcattctt tgcagattgc gatattgaat catattgcaa ctttccaaga acactaatta
     3541 tcttgtttct tccttctttt ccaatataca ctctttcacc gatgtcaaaa ttaccgtttt
     3601 gaatcccaag caattctaat aatgtcaaac gattttcgcc tatcgcctga ataattattc
     3661 cttctctccc ccttattgtt agggatttac ctctaagagc gaaatctaga acatacgcat
     3721 attcttcaaa cttatgacta tgaagattat aatcatgact ggtatgtcta ttatgaaagt
     3781 tattataact actagaatcc aattatttgc aattatatac agcggacttt ttaagtttca
     3841 tggactgccg ttattttttg taatatgctt tctgaagttg atgttagaat caatttcttc
     3901 cagccaaatg taaaagccct tatttcctcc agagaagagg gtaatatatt caccacttct
     3961 actgcctctt cttcagtaag accacattga gttactaatt cactcacgag tttttgcgcc
     4021 tgttttctgc ttatttttga aaacttattt acataatcat aggtccatct ctgaatttga
     4081 tccatttcgt ctaccttctt tgcctccagt atttccttta cattaggaag tgttatcatt
     4141 tctttttttg ttatttttgt caacaggtaa taccttctat tttattggac ggatgtgatt
     4201 aaactttgtt tgcaagaact tttgtttatc gccgacaagt atcccaacct ttgcagttct
     4261 tctcccaatt tccttgatat acccaaccct tccttggaat cttcgatgtg gggttgtttt
     4321 atgctctcga gggtctatta tcaccacaac tttgtcaccg attgaataat taattaataa
     4381 atgtgatagc ccttttgaca tattcccctt tgtcatgata tgtctagatt tccttcttat
     4441 accgtgagat tttggcatgc tggattatca tattgctcca taatttaata ttaactggta
     4501 aacttgtttg atattgtatt tcgattgtcg ttgaagttgt gaaaccactc aatgttcatg
     4561 attctgacga acaactattt ttgcggatct ccaatacctt ggtcatttag tgcaaatagg
     4621 atctcccttt ctgaatgata cggactgtcg accattctgg cgattctatt tttaccagct
     4681 ttctttaggt agagtcgata tgtactggta tgagccatta cgttgccacc tgtggctttg
     4741 ttaggatcac caaatatcgc atctggcgaa gactgtatct gattcgttat taccacagct
     4801 attttgcacg tttcagcaat tctcaagagg atgtgtaaca atctgttaat tctttgctgt
     4861 ctttctgaca agaaggatct gccaagaaac tctgccctat agtgtgatac tatggaatca
     4921 acaatcatga ttctaatatt gtgtaaattg ataatattcg gagattcctg aataattact
     4981 tcttgatgag agctattgta tgcttttgca acgataacat tttcaagagt tttattggga
     5041 tcaaatttcc ttgcagatgc aatggctgca attctttccg gcctaaatgt attttctgtg
     5101 tcaatataga gcgctctaga aagattacct tctgcggcat tttgttgaac ggtgacgcag
     5161 agagtatgac aaatttgagt ctttcctgta ccatattcgc catatagttc agtaattgcc
     5221 cttgtttcta ttccaccgcc caacaactca tctagatttt ttgaacccgt gggaatacga
     5281 tattctagtt tcctcttttc ataaatttga gttgcagtaa taaacggctt atcaaaaaca
     5341 ccaatatctt ctaatatttc tctcgccctg ttgcaaagta gtatacattt ctctatcgct
     5401 attccggtag cctctgcaat atctaaagga cctcgaataa ctagatcctt gatggatcta
     5461 aaaccagcct ccctcaaaga ggttttagtt gccgggccta tgtcctttaa tgtttcaatg
     5521 tcaaatacgc cttcgctacc gtcttcggac aatttgtggt tatcaggtag tatctagtaa
     5581 cttcgtttga ataaaccttg ttgttagcgt tatattcaaa aaatgaccat ccattatcac
     5641 ttggaaaata ttctttttgc caattgcagg gtgccattaa ttgtatgttc tttagattca
     5701 attggaaata tgtctcttag atgaagctct tttgttgtat taggaccaat acttatcaat
     5761 gcgtcgatgt tatcaatgta tccattaaaa ttcggaagta tgttttgcat tatagaaaag
     5821 aaatagcgta ctgccgacgg gctggtaaaa atcaccgctt gtacgttatt attcttaatt
     5881 tccttagaga attcaatcca tgtatgattt attgtttcta cttggggata atagatgtaa
     5941 aattcatcca aaattattcc ctttgaatct aattcatcct ttaggaaaga gtttgatgca
     6001 ccactcctcg gtatcataat tcgagtacct ggcttgagtg acaattttct taataatttc
     6061 aaaataccaa atgtggaata ttcgcttggt tgccacttta ccgaaatatt attcgcctcc
     6121 agtttttttc ttgttgacgg acctattgcg ataacatcgc aattcgttaa ttgttcgtcc
     6181 agcaattgag ttaaactatt ttctctcacc attttaaaga agagatcgac agaattagga
     6241 ctcataaaga catagtagtc atatttcttg gagcaaatgt cagagaattt tttatgaaaa
     6301 tgatttgggt caataggaat taacttcata gttggcaagg taattggggt acctccctct
     6361 tccttcacaa ttcttgtaaa ttctgtattg tctttttccc cacgtgttat tgctatggtt
     6421 ttattgagga aaattttact caacaagata ataaaattag ctagtcataa aagcattagg
     6481 attactaact taggatataa ttattttgga taaatctagt tatttggaag gaaccattct
     6541 atcttgtttt gaattccaac aacttttcca ataatgatta tggcaggaga ttgaattttt
     6601 ttctgcttaa c
//
LOCUS       DASUMD010000093        11251 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1460386, whole genome shotgun sequence.
ACCESSION   DASUMD010000093 DASUMD010000000
VERSION     DASUMD010000093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 11251)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11251)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11251
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1460386"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(181..555)
                     /locus_tag="VFX26_02555"
     CDS             complement(181..555)
                     /locus_tag="VFX26_02555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit A"
                     /protein_id="HEX5573389.1"
                     /translation="MAGETVTQFAPIMYMLGFGLLASVPVLFLSKLLSPRRRYNPVKF
                     LPMECGQMPSGEGRAHFMMQYYSYILMFVVFDVMSLFLYAWGASLFSISRSATLPIIG
                     FLAIMFSAMAYALYLSGRKGIW"
     gene            complement(602..1798)
                     /locus_tag="VFX26_02560"
     CDS             complement(602..1798)
                     /locus_tag="VFX26_02560"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEX5573390.1"
                     /translation="MTKYDIVIVGGGPAGLSAAYSAARKNAKTLVLEKDDSIAQNIRT
                     SGVSWIDDMKRLAIPEKCYNAIKNFRIISPSKDIVLRGKTPKSCVLDVRSTYQYLATL
                     AAREGAEISVRSEVQSVKSNSNRISGVVANTTRGKIEIDSNLVIDASGFNSIVARRSG
                     LARNWTRYGIGAEYECYCDDIDPETWILMVGHKYSDAGYAWIFPISKQRVRIGTGVGR
                     PESITDPIKKLNSIMESKIKPLDELRNIQPIEFHYGFIPNEGSRKSTIFDGLMLVGDS
                     AGQANPLVLEGIRFAIEFGRVAGDVGANSLSEGCTRESLKQYEKFWKGRVSSKIKSSL
                     KVQSRWLQMNDESWDREVEIIQQMTVEDFLDFIKAQFTTSRLMKLILTHPHSTAKQLF
                     RIILDK"
     gene            1932..2423
                     /gene="bcp"
                     /locus_tag="VFX26_02565"
     CDS             1932..2423
                     /gene="bcp"
                     /locus_tag="VFX26_02565"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HEX5573391.1"
                     /translation="MTNGEILGSDGLKEGNRAPDFSFNSMNQKMKLSDFRKRKVVIYF
                     YPRDFTTGCTTEASEFTIDYDRFKRAGIEIIGVSPDTDDSHKKFKQKMNIPYHLASDT
                     NNTISKKYGTYGLKKFMGKEYMGVNRTTFIVDENGTILRIFNKVKPQGHSNQVLEALG
                     ITN"
     gene            complement(2429..2977)
                     /locus_tag="VFX26_02570"
     CDS             complement(2429..2977)
                     /locus_tag="VFX26_02570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573392.1"
                     /translation="MSQSNLIRIIIQNYIESSNCFDIITKDGITTDQFAISRSDSLFV
                     QVSLSIRQVHLQIPAILRSVSIAKNLDYYQNKICHEISSIPDTEQIKLILQILRVIII
                     ALFLKLDKLMTKKTNYSLTDDNHFLEWNKYSEQVLIATSTIFVGYQRGSTETKILDTI
                     KGTLNYIGISMSMIDKEMSYMY"
     gene            complement(3024..3440)
                     /locus_tag="VFX26_02575"
     CDS             complement(3024..3440)
                     /locus_tag="VFX26_02575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573393.1"
                     /translation="MDIDSPLKRKQDLYALLKSQHEAEMKEMNHYMAVLSRMNNSIIK
                     NYLHKLLDDGLRHIEYISTMMSSIEGASSSLNLTKKGIINSIDEEKESRDLLVKCIAL
                     ADDVETKSLLKSIVVDEEHHIKILEHIEELVSSSGK"
     gene            complement(3679..3763)
                     /locus_tag="VFX26_02580"
     tRNA            complement(3679..3763)
                     /locus_tag="VFX26_02580"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3725..3727),aa:Leu,seq:gag)
     gene            3866..4102
                     /locus_tag="VFX26_02585"
     CDS             3866..4102
                     /locus_tag="VFX26_02585"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit N"
                     /protein_id="HEX5573394.1"
                     /translation="MLIPVRCFTCGNLIANKYAEYSNRIKAGEDPAEVMDSLNIKRYC
                     CRRMFVSSVETIYQVIPYYEALRRRMSEIESEID"
     gene            4116..5363
                     /locus_tag="VFX26_02590"
     CDS             4116..5363
                     /locus_tag="VFX26_02590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enolase C-terminal domain-like protein"
                     /protein_id="HEX5573395.1"
                     /translation="MPLISSLKGRIVFNSRGSKSIEIDVFTDNKFLGRASAPSGASVG
                     SHEVPSFVDNNPELTLRTFESNMAKFIGVDASDPKAIFEILKSLDTSNNFSRIGGSVA
                     YALSIAAAASASLSLDVPLFAMLNDKGPYRFPYPLGNIVGGGSHAGPGTPDIQEVLVC
                     PMGARTIMEALETNFIIHKQVRTVLEKIDNRFTYGRGDEGAWAPNVNNDEAVSIVAQA
                     VENAGLRVGKDVALGIDFASSSIWDSTRKIYDYSRQGLVRNTEEQIGFVEDLIKNYHL
                     IYAEDPVNEDDFESMALLTKRNKNCLITGDDMLVTSSERVHEACKYGACNGAILKVNQ
                     AGTLHNALDFADNCTKNNIKIITSHRSGESIDAHISHIAIATSSKMIKTGVVGGERVS
                     KLNEFLRLSEYDLIKGMIDLSFT"
     gene            5365..6090
                     /gene="rpsB"
                     /locus_tag="VFX26_02595"
     CDS             5365..6090
                     /gene="rpsB"
                     /locus_tag="VFX26_02595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HEX5573396.1"
                     /translation="MASANQEENAGDSLRETENQKSENTATQTFIENGEDSEDIENDN
                     LEKMILSTGIRVGTPVKTKFMSPFIVRANPEGLYILDISKTLTRIDVAAKFIGRADIS
                     KIIVTSAREYGKTPVQKFCEATGASGIIGRFMPGTFTNPSLASYMEPQVVIVTDPQAD
                     QQAVLEATRAGVPVVAIANSDNVTSNVDLVIPANNRGRKALATVYWLLTREVLKKQGK
                     IKSDNEMKISIDDFETKLVEEIS"
     gene            6087..6929
                     /gene="amrB"
                     /locus_tag="VFX26_02600"
     CDS             6087..6929
                     /gene="amrB"
                     /locus_tag="VFX26_02600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AmmeMemoRadiSam system protein B"
                     /protein_id="HEX5573397.1"
                     /translation="MNSSKREPAVSGIFYPKNPTELNENLESLFRDSNFGPGNLPPSS
                     NNERIYGIVSPHAGYMYSGAVAAQGYYKLSSSKFESAIILGPNHYGLGSEVAIMNTGS
                     WKTPLGEIEIDSEVAEEIHRNCDIVNIDEQAHSRDHCIEVQLPFLQYIRKEFKIVPII
                     LINQGKNTCKKLGNDIYESIKERSLIPIASSDLTHYESNSQAYEKDNLLISAILSLDI
                     EKFYSILISFNVTACGYGAIATVMEISKKMGATKGKLLRYATSGDVAGDNKSVVGYSS
                     ILFV"
     gene            6926..7912
                     /gene="mvk"
                     /locus_tag="VFX26_02605"
     CDS             6926..7912
                     /gene="mvk"
                     /locus_tag="VFX26_02605"
                     /EC_number="2.7.1.36"
                     /inference="COORDINATES: protein motif:HMM:TIGR00549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004496 - mevalonate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0016126 - sterol biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019287 - isopentenyl diphosphate
                     biosynthetic process, mevalonate pathway [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mevalonate kinase"
                     /protein_id="HEX5573398.1"
                     /translation="MNYRTNKAISSAPAKIILFGEHFVVYSNPAIVAAINKRISVQAQ
                     VNDNTRINIKSGENSLSVPVISKEDIITSNDNSLLFLNPIFKCVKHILSEKDLLNVGI
                     NLDIDSQIPYGEGLGSSAASCVSTVAAVYSLFSNRDRNQIYETARIMEQNIHTNSSGI
                     DCYVSTFGGIVNFEPNKGFSNIRPKKKFTLLVGTTGVKHSTGEVVSEVKQFRQRNSSV
                     FKDLSLKAHAVCKRAMNSIYEGNEMELGNMLTENHKLLSRLGVSHPEIEKLIESCLDN
                     GALGAKLTGAGKGGAIIALVPNDVSKEVLTKISRGSGKWMLVEFDYDGVVFG"
     gene            7963..8733
                     /locus_tag="VFX26_02610"
     CDS             7963..8733
                     /locus_tag="VFX26_02610"
                     /EC_number="2.7.4.26"
                     /inference="COORDINATES: protein motif:HMM:NF040647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isopentenyl phosphate kinase"
                     /protein_id="HEX5573399.1"
                     /translation="MQQDVVLIKLGGSVVTHKERPMTINKMAIDRIFKSLLSIKVPII
                     LVHGGGSFGHYWSIKYDMHSKPDRYPSDGIAVVHESMISLNHIMVKSMIKFKLNPYAV
                     PPFSFISGNKPLVKKIFELASMTRDKIIPVTYGDVVYRANHKYSILSGDELMTMISHV
                     LKPKKVIFAVNVDGIYTDPQGKQVIQTIEEKSLIKFSNVNFDITGGMKRKVREALKIS
                     LGGMDVHFVNGFKPERLLKLIENKKTEGTVIKGKRSST"
     gene            8735..9829
                     /gene="fni"
                     /locus_tag="VFX26_02615"
     CDS             8735..9829
                     /gene="fni"
                     /locus_tag="VFX26_02615"
                     /EC_number="5.3.3.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR02151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004452 - isopentenyl-diphosphate
                     delta-isomerase activity [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type 2 isopentenyl-diphosphate Delta-isomerase"
                     /protein_id="HEX5573400.1"
                     /translation="MPDESDSPSDIEVIKKRKKEGIVIPLTRNVQAKESSTYLEYVKL
                     IHNALPEIDYEAVETTQNFLNHDFKAPIIIDSMTGGTPEATKINSRLSLVAEKFGLGM
                     GLGSQRAGLLSSELAETYSIARSNAPSAFLVANIGGAQLSKGLKVQEIRSMIEMIEAN
                     ALVVHLNPLQELIQPEGEPKYKGVLSKIKEICANFDIPIIVKEVGAGISMEVAKKLES
                     AGVSAINVAGSGGTSWAGVEKLRAETAHDSNKINLGELFWDWGIPTAVSLIEVRNSVK
                     IPVIASGGIRNGLEIAKCIALGANMCGMAFPFLRQASKSFESLCDFTNKTLIELKSTM
                     FLVGTKNIAKLAKSRFIITGELAKVNQWII"
     gene            9817..10818
                     /locus_tag="VFX26_02620"
     CDS             9817..10818
                     /locus_tag="VFX26_02620"
                     /inference="COORDINATES: protein motif:HMM:NF012568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEX5573401.1"
                     /translation="MDNLKDDLNDVVLHVRNFTLSILKGEPNRLYDASRTYLASGGKK
                     LRPFMVIKSCEMFAGREEKALPAAAAVELIHNFSLIHDDIMDNDDIRHGISTVHKKYG
                     LPIALIAGDILFSKAFQVLSLQGKSVGHDDNIIAEMNRILSTSCVHVCEGQGLDIQMA
                     SSNKIPTIDEYLDMIRKKTASLFEVSCALGVLSSAEPLVDNVDNLSKFGRFAGIAFQL
                     IDDLIGVTGDPKLTGKAVGNDIREGKKTYPILFALERADTNKREKIMKVFGFKGANRD
                     YVEDAVSAISSLNIEEEVRRTAHDNMLKAFESISSYDETNAKNALVSSAKFIVERSL"
     gene            10823..>11251
                     /locus_tag="VFX26_02625"
     CDS             10823..>11251
                     /locus_tag="VFX26_02625"
                     /inference="COORDINATES: protein motif:HMM:NF012951.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043039 - tRNA aminoacylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase family protein"
                     /protein_id="HEX5573402.1"
                     /translation="MKSNDEIHRLVNAIALKNASEHSGRTNVNTVLSRILSLKPELKK
                     ELRTLIEEIRTQVDSVNKLELEQQKKILDEINLIDSKFDSKSKDGQMDSHPFPELQMT
                     ETQVVTRFPPEPNGYPHIGHAKAVIIDEEYARIYGGKLILR"
BASE COUNT         3742 a         1897 c         2249 g         3363 t
ORIGIN      
        1 attcttcccc aattaattgc atatcctaat ggaaggtcca acgctcttgt aagaacgtcc
       61 ccaagttttc caaccatgag attaaaatta gtcggattta ctagatcttt gatcattact
      121 gaatctcagc ctccaatttg aatccatcat atttaatgct tagagagatt atttgaaaat
      181 ctaccaaatg cctttcctcc ctgatagata aagcgcataa gccatggcag aaaacattat
      241 tgcaagaaat cctattattg gaagtgttgc tgagcgtgaa atagaaaaaa gtgatgcacc
      301 ccatgcatac aagaataagg acatcacatc aaacacgacg aacatgagaa tgtaagagta
      361 atattgcatc ataaagtgag ctcttccttc accagaaggc atctgaccac attccattgg
      421 taaaaatttt acagggttat acctacgtct tggtgaaagc aattttgaca aaaacaagac
      481 tggaacagag gcaagtaatc caaagccaag catatacatg ataggtgcaa actgggtaac
      541 ggtttctcca gccaaggcta aacttgctgt ttttgaatca tataaaaatc ttgcttcagt
      601 cttatttgtc caatattatc ctaaatagct gttttgcagt gctatgtgga tgagtaagta
      661 tcaatttcat caatctgcta gtagtaaact gtgccttgat gaaatcaaga aaatcttcaa
      721 cagtcatttg ttgtataatt tcaacttctc tgtcccagga ttcatcattc atctgcaacc
      781 atcttgattg aactttaagc gatgatttta ttttagagct aacacgtcct ttccagaatt
      841 tttcgtattg ctttagggat tctcttgtac agccttccga taatgagtta gcgcccacgt
      901 caccagctac acgcccgaat tctattgcaa atcttattcc ttcaagcaca agtggatttg
      961 cctgacctgc tgaatcccct accaacatta acccatcaaa tatggttgat ttacgtgatc
     1021 cttcatttgg tatgaatcca tagtggaatt caattggttg aatatttcga agctcgtcta
     1081 atggtttgat cttgctttcc ataatggaat tcaatttttt gattggatct gttatagatt
     1141 ctggacgtcc tactcccgtt cctattctca cacgttgttt agatatggga aaaatccagg
     1201 cataacctgc gtctgaatat ttatgtccaa ccatcaaaat ccatgtttct ggatctatat
     1261 catcgcagta acattcgtat tcagcgccta ttccgtacct tgtccaattt cgagcaagac
     1321 ctgatcttct tgctacgatg ctattaaatc cactcgcgtc aataacgaga tttgaatcaa
     1381 tttcaatctt gcccctggtg gtattggcca ctactccact tatcctatta gaattagatt
     1441 ttacagattg aacttcgctc cgaacagata tttcagctcc ttctctcgct gcaagcgttg
     1501 ctaaatactg gtaagtagat cggacatcca agacacatga ttttggcgtt tttcctctaa
     1561 gaacaatatc ctttgaaggg gagattattc tgaaattctt tatggcattg taacattttt
     1621 caggaattgc aagtcttttc atatcatcaa tccatgacac gccactggtt ctaatgttct
     1681 gtgcaataga atcatccttt tctaggacaa gggttttagc attttttcta gcagcagaat
     1741 atgcagccga aaggcctgcc ggtccaccac ctacaatgac gatatcgtat ttagtcataa
     1801 aatcacttaa cgcccaatta tcgactatta aaattcaatt gaaagttata ttaattttta
     1861 ttcagtaata gacaagcatt aaactatcaa cgcttttatt atgccatttt gaaaaattag
     1921 gatacagaaa tttgactaac ggtgaaatat tgggttcaga tggtttgaaa gaaggaaatc
     1981 gggcaccaga tttttcattt aatagcatga atcagaaaat gaaattatct gattttagga
     2041 aaagaaaagt agtaatttat ttttatccgc gagattttac aacaggatgt acaacagaag
     2101 cttctgaatt tacgatagat tatgatagat tcaaacgtgc gggaatcgaa ataattggag
     2161 taagtcctga taccgatgat tcgcacaaaa aattcaaaca aaagatgaat ataccatatc
     2221 acttggcctc tgatacaaac aatacaatat caaaaaagta tggtacatat ggactgaaga
     2281 aattcatggg taaggagtac atgggagtta acaggactac ctttatagta gatgaaaatg
     2341 gtacgatatt aagaatattc aataaggtca agccacaggg tcatagtaac caagtacttg
     2401 aagcacttgg gatcacaaat taatttatct agtacatgta tgacatttct ttgtcaatca
     2461 ttgacatgga tataccaata tagttcaaag taccttttat agtatcaaga attttagtct
     2521 ctgtacttcc tcgttgatat cccacaaaaa ttgtagatgt ggctatcaga acttgctcgg
     2581 aatatttgtt ccattctaga aaatgattat cgtctgtcaa agagtagttt gttttttttg
     2641 tcattagttt atccagtttt agaaacaatg caattattat cacacgcagt atttgcaaaa
     2701 tcagtttgat ctgctctgta tcaggaattg acgatatttc atgacatatc ttgttttgat
     2761 agtaatcaag attcttggca atactcacag atctaaggat tgcaggaatt tgtaaatgta
     2821 cttgtcgtat gctcagggaa acttggacaa acaatgaatc agatctggat atggcaaatt
     2881 gatcagtagt aattccgtcc ttagtaataa tatcgaaaca gtttgaggat tcgatgtagt
     2941 tttgtattat tatgcgaatt agattggact gtgacataag ttgtttaaaa tatctgcgag
     3001 ttaataattt gattccaaaa atatcattta ccagatgaag atactaactc ttcaatgtgc
     3061 tccaatatct tgatatgatg ctcttcatct acaacgatgc ttttcaacaa tgattttgtc
     3121 tctacatcat ccgctagtgc aatgcatttt accaacagat ctcttgattc tttttcttca
     3181 tctatcgagt tgataattcc cttcttagtc agattcaaac tactacttgc tccttcaatt
     3241 gatgacatca ttgtagaaat atattcaatg tgtcgcaatc catcgtcaag taatttgtgt
     3301 aaataattct ttatgatact attgttcatc ctgctcaaaa ctgccatgta atgattcatt
     3361 tccttcattt ctgcttcgtg ttgtgatttc aatagagcat aaagatcttg ctttcttttt
     3421 aagggcgagt caatatccaa tatcataacc tgtagattaa ttgataaaaa attttcgcat
     3481 agttatcatc ttgattgaaa ttatttaaat aacataaatt tggaaatcag ttagctgttg
     3541 acaaatactg cactatgcga ttgtaagtgt cacgttaaat atggacacaa atcactttgt
     3601 gaaaaatgta ttgaaaaaca caaaacatct ccctattata aaatactaaa aaaattttcc
     3661 tgaattaatt atttgatatg cgggagatgg gatttgaacc cacgaacccc taagggataa
     3721 gagcctcagt cttacgccgt tgaccaagct gggcgactcc cgcatagatt tagcggttta
     3781 aaaatcacta atttgaatat ttgctatata aacacgaggg cagcaaatat atggttttta
     3841 taagccaact gaagataaaa aaccaatgct tatacccgta agatgcttta cctgtgggaa
     3901 tttaatagct aacaagtacg ctgaatattc taaccggatc aaagctggag aggaccctgc
     3961 agaggttatg gactctctta atatcaagag gtattgttgt aggagaatgt ttgtctcttc
     4021 tgtcgaaaca atttatcagg tgattcctta ttacgaagca ttacgaaggc gcatgtcaga
     4081 aattgaatca gaaatagatt aagtttgaag taaatatgcc tttaatttca tcattgaagg
     4141 gaaggattgt ttttaacagt agaggctcaa agtcgataga aatagacgta tttacagata
     4201 acaaatttct tggtagagca tctgctcctt caggtgctag tgtaggaagt catgaagtac
     4261 caagttttgt ggacaataat ccagaattga cactaaggac attcgaatca aatatggcta
     4321 aatttattgg ggttgatgct tcagatccaa aggccatttt tgaaattctc aaatcattag
     4381 atacttccaa taactttagt agaattggcg gatctgtagc ttatgcgttg agtattgcgg
     4441 ctgcagcttc tgcttcactc tcattagacg tacctctttt tgcaatgcta aatgacaaag
     4501 ggccatatcg gtttccttac ccccttggaa acatcgttgg aggaggatcc catgcaggcc
     4561 ctggtacgcc tgatattcag gaagttcttg tctgtccaat gggagccagg actatcatgg
     4621 aggctttaga gactaatttc attattcata aacaagttag gacagtttta gaaaaaatag
     4681 ataacagatt tacatatggt aggggggatg aaggcgcctg ggcacccaat gtgaataatg
     4741 atgaagctgt atcaatagtg gcacaagcag tggaaaatgc ggggctgaga gtgggcaaag
     4801 atgtggcttt gggtatcgat tttgcaagtt cttcaatctg ggattctacc agaaaaattt
     4861 atgattactc gagacaggga ctggttagaa ataccgaaga gcagataggt tttgtcgagg
     4921 acttgataaa gaactatcat ttaatttatg ccgaggatcc tgttaacgaa gatgattttg
     4981 agagtatggc actccttact aaaagaaata agaattgtct tattactggt gacgacatgc
     5041 ttgtaactag ctccgagagg gtacatgaag cgtgcaagta tggagcttgt aatggtgcaa
     5101 ttttgaaagt taatcaagct ggtacattgc ataatgcttt ggattttgca gataattgta
     5161 cgaaaaataa tatcaagata ataacttcgc atagatctgg agaatccatt gatgcgcata
     5221 tatcacacat agcgatagca acatcctcta aaatgataaa aactggcgtt gttggaggcg
     5281 aacgagtatc caaattaaac gaatttttaa gactttcaga gtatgattta ataaaaggca
     5341 tgattgattt gtctttcacc taaaatggca agtgcaaacc aagaagaaaa cgctggcgac
     5401 tctctaaggg aaactgagaa tcaaaaatct gaaaatactg ctacccagac attcatcgaa
     5461 aatggagaag atagcgagga tattgaaaat gataatctcg aaaaaatgat actttcaaca
     5521 ggaatacgtg taggaactcc tgtaaaaact aaatttatgt cacctttcat agttcgcgca
     5581 aatcctgaag gcctttatat tttagatatt agtaagacgc tgacgaggat agatgttgct
     5641 gccaagttta ttgggagggc agatatttct aaaatcatag ttacgtctgc tagagaatat
     5701 ggaaaaaccc ctgtccagaa attttgtgag gcgaccggag catccggaat tattgggcgc
     5761 ttcatgcctg gaacatttac gaatccctct ttggcaagtt atatggaacc gcaagtagta
     5821 attgtcacag atcctcaagc cgaccagcaa gctgtgctag aggcaactag ggccggcgtt
     5881 ccagttgttg caatagcaaa cagtgataac gttacctcga atgtagacct ggtcattcct
     5941 gcaaataaca gaggaagaaa ggcacttgcg accgtgtatt ggttacttac aagggaagta
     6001 ttgaagaaac agggtaaaat aaaatctgat aatgaaatga agatatcaat tgatgacttt
     6061 gagaccaaat tggtcgaaga gatatcttga attcctctaa aagagaacct gctgtttctg
     6121 gaatatttta tccaaaaaat cctactgaac tcaatgaaaa cctagagtca ttatttagag
     6181 attcaaattt cggtccagga aatttaccac cgtctagtaa taacgaaaga atatatggaa
     6241 ttgtcagtcc tcatgcagga tatatgtatt ctggtgctgt agctgcacag ggttattaca
     6301 aattatcttc atctaaattt gaatcggcaa ttattcttgg tccaaatcat tacggattgg
     6361 gtagcgaggt ggcaataatg aatacaggtt cttggaaaac tcctctagga gaaatagaga
     6421 ttgattctga agtggcagaa gaaattcacc gaaattgtga tattgttaat atcgatgagc
     6481 aagcacattc cagagatcat tgtattgaag ttcaacttcc gttccttcaa tacataagaa
     6541 aagaattcaa aatagtgcca attattctta ttaatcaggg caagaatacc tgtaaaaaac
     6601 ttggtaatga tatatatgaa tcaatcaagg aacgaagctt gattccaata gcttcttcgg
     6661 atctgacaca ttacgaatca aatagtcaag cttatgaaaa agacaatctc ttaatttctg
     6721 caatcctctc actcgatatt gaaaaatttt attcaatatt gatttcgttt aatgttacag
     6781 catgcggcta tggtgccatc gctacagtta tggaaatatc aaaaaaaatg ggggcaacga
     6841 aaggcaagtt gttgaggtat gccacaagcg gggacgtagc aggagataat aaatcagttg
     6901 tcggttattc atcaatttta tttgtatgaa ttaccgtact aataaggcca tatcatcagc
     6961 tcctgcaaag ataatccttt ttggagaaca ctttgtagta tatagtaacc ctgcgattgt
     7021 agcagcaata aataaaagaa taagtgtgca agcacaggtt aatgacaaca cacggattaa
     7081 tatcaaatcc ggagaaaatt cattaagtgt accagtgata agtaaagaag atattattac
     7141 gtctaatgat aacagtttat tatttctaaa tccaatcttt aagtgcgtaa aacatatctt
     7201 atctgaaaag gatttactta atgtggggat aaatttggat attgattcac aaattccata
     7261 tggagaaggg ctgggatctt cggcagcatc atgcgtgtca accgttgcag cggtttattc
     7321 cttgttttca aaccgtgaca ggaatcagat ctatgagact gcaagaatta tggagcaaaa
     7381 catacatacg aactcatcag gcatagattg ttatgtttca acttttggcg ggatagttaa
     7441 ttttgaaccc aataaaggat tcagtaatat aagaccaaaa aagaaattca cgctcctcgt
     7501 tggtaccact ggtgtaaaac attcgacagg cgaagtagtc tcagaggtca agcaattcag
     7561 gcaaagaaat tctagtgttt ttaaagatct ttccttaaag gctcatgctg tttgtaagag
     7621 agcaatgaat tcaatatatg aaggcaacga aatggagctt ggaaatatgc tcactgaaaa
     7681 tcacaaatta ttatcaaggt taggtgtatc ccatccagag atagaaaaat tgattgaaag
     7741 ttgtcttgat aacggtgctt tgggtgcaaa attgactggt gcaggtaaag ggggtgcaat
     7801 aattgcactc gtaccaaatg acgtaagcaa ggaggtatta accaagataa gcagaggatc
     7861 aggcaaatgg atgttagtag aatttgatta tgatggtgta gtttttggct gattttggat
     7921 gtggtatcaa gacttaaatt ttcttaaaaa aatctaacca taatgcagca agatgttgtt
     7981 ctaattaaac tgggcggctc ggttgttact cataaagaaa gaccgatgac tatcaacaag
     8041 atggccattg atcgaatctt taaatcactt ttatcgataa aagttccaat catactagtt
     8101 catggcgggg gctcgtttgg acattattgg tcaataaagt atgatatgca ttccaaaccc
     8161 gataggtatc cgtccgatgg tatagcggtg gttcatgaat caatgatttc attgaaccat
     8221 ataatggtca aatcaatgat aaaattcaag ttaaatccat acgctgttcc gcctttttca
     8281 tttatttcag gtaataaacc tcttgtgaaa aagatttttg aattagcatc gatgactaga
     8341 gacaagataa taccagtaac atatggagac gttgtgtata gagcaaatca taaatactca
     8401 atactgtcgg gtgatgaatt gatgacaatg atctcccatg tattaaagcc aaaaaaagta
     8461 atctttgccg tcaatgtaga tgggatatat acagatcccc agggcaaaca agtaatacaa
     8521 acaattgaag aaaaatcatt aattaaattt tcaaatgtga attttgatat aacagggggt
     8581 atgaaaagaa aagtgcgtga agcattaaag atttcacttg ggggaatgga tgtacatttt
     8641 gtaaatggct tcaaacctga aagactcttg aaattgatag aaaataagaa aacagaaggt
     8701 acagtaataa agggaaaaag gtccagtacc tgaaatgcct gatgaatctg actccccttc
     8761 cgatatcgaa gtaataaaaa aacgaaaaaa ggaaggaata gttattcctt taactaggaa
     8821 cgttcaagca aaagaatcat ctacatattt agaatatgtc aagctaattc ataatgctct
     8881 gccagaaatt gattacgaag ctgttgaaac tacccaaaat tttctaaatc acgacttcaa
     8941 agcgccaatt attattgact ctatgactgg aggaactcct gaggctacaa aaataaattc
     9001 taggttgtca ctagttgctg aaaaatttgg tcttgggatg ggactgggta gtcaaagagc
     9061 tggactttta agcagtgagc ttgctgaaac ttattcgata gctagatcaa atgcgcctag
     9121 tgcatttctt gttgccaata ttggcggtgc gcagctttcg aagggactga aagttcagga
     9181 aatcaggagt atgattgaaa tgattgaagc aaatgctctt gtcgtgcact tgaatccctt
     9241 gcaggaacta attcaaccag agggagaacc aaagtacaag ggagttttat caaaaatcaa
     9301 agaaatttgt gcaaattttg atattccgat aattgtaaag gaggtgggag ctgggatttc
     9361 aatggaagtt gctaaaaagt tagagtctgc gggggtttcc gcaatcaatg ttgctggttc
     9421 tggtggaacc agctgggcag gtgtggaaaa gttaagggct gaaacagcac atgactcaaa
     9481 taagataaat ttgggagaat tgttttggga ttggggcatc cccacagcag taagtttgat
     9541 agaagtgaga aattcagtaa agataccagt catcgcatca ggtggaattc gaaatggttt
     9601 agaaattgct aaatgtatag ctttaggagc aaatatgtgt ggaatggcct tcccctttct
     9661 cagacaagca tcaaagtctt ttgaaagctt gtgtgatttt accaataaga ctttgattga
     9721 attgaagagt actatgtttc ttgttggcac taaaaatata gctaaattag caaaatcgag
     9781 attcataatc actggagaat tagcaaaggt gaaccaatgg ataatttgaa agacgatctt
     9841 aatgatgtgg tattacacgt aagaaacttt acgttatcga tacttaaagg tgaaccaaac
     9901 aggttgtatg atgcgtcacg tacgtatttg gccagtggag gaaagaagct caggcctttc
     9961 atggtaataa agagttgtga aatgtttgcg ggcagggaag aaaaagcgtt accagctgca
    10021 gctgcagtag agctaatcca taatttttct ctaattcatg atgatatcat ggataatgat
    10081 gatattcgtc atggaatctc tacggttcat aagaaatatg ggttaccaat tgcactaata
    10141 gctggagata tcttgttctc caaggcattt caagtactct ctttacaggg taaaagcgtg
    10201 ggtcacgacg ataatatcat tgctgaaatg aatcggatac tctctacttc atgtgtacat
    10261 gtctgcgagg gtcaaggtct tgatatccag atggcatcca gtaataagat tccaaccata
    10321 gacgaatatt tggacatgat acgaaagaaa actgcgtctc tttttgaggt ttcttgtgca
    10381 ctaggcgttc tatcttctgc agagcctctt gtggataacg tggacaacct ttctaaattt
    10441 ggacgatttg ctggaattgc atttcagtta atagatgatt taataggagt aacgggtgat
    10501 cctaaactca ctggaaaagc agttggaaat gatataagag agggtaaaaa gacatatcca
    10561 atactattcg cattagaacg tgcagacaca aataagagag agaaaattat gaaagtgttt
    10621 ggattcaagg gagcaaaccg tgactatgtc gaagatgcgg tgtctgcaat atcttccttg
    10681 aatatagaag aagaggtgcg gagaacggct catgataata tgctcaaagc gtttgaatca
    10741 ataagtagtt atgatgaaac aaacgcgaaa aatgctcttg tatcttctgc aaagtttata
    10801 gtcgaaagga gtttgtagtc ttgtgaagag taacgatgaa attcatagat tagttaatgc
    10861 tatagcactg aaaaatgcat ctgaacactc gggaagaact aatgtaaata ctgtcctttc
    10921 aagaatactg agcctgaaac ctgagttaaa aaaggaatta aggacattga tagaagaaat
    10981 aagaacgcaa gtagattccg taaataagtt agagcttgag cagcaaaaaa aaattttgga
    11041 tgagataaat ttaattgaca gcaagttcga ttcaaagtca aaggacggcc aaatggattc
    11101 acatccattt ccagagctcc aaatgacaga aactcaagtg gttactcgat ttccacccga
    11161 gcctaatggt tatccgcata taggccacgc gaaagcagtc ataatagatg aagaatacgc
    11221 cagaatttat gggggtaaac tgattctgcg t
//
LOCUS       DASUMD010000094        14593 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1349499, whole genome shotgun sequence.
ACCESSION   DASUMD010000094 DASUMD010000000
VERSION     DASUMD010000094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 14593)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14593)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14593
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1349499"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1293
                     /locus_tag="VFX26_02630"
     CDS             <1..1293
                     /locus_tag="VFX26_02630"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF003118.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed DNA polymerase II small subunit"
                     /protein_id="HEX5573403.1"
                     /translation="DEPVITKSNIDSNDENYKIIFDPTYKINSENDKDFFKLFDSRYR
                     KTLKILSIRSESRQIRKIKHIKDLRNKSRFSSLDNENERGKFIDSAFVAGLIMSKRSR
                     KNDVELVIDDKTGSIPVVCKTRDLINEASSLVLDQMLMLEISLSKRNSNDFVIKDIIF
                     PDIPEHVAAKSGTESYVALISDLHVGSKYFMENEFNDFISWLSSDDEIVSKIKFVCIA
                     GDIVDGIGIYPNQDKELIDININKQMSYAAALLQKIPKRMHVFLIPGNHDPGRRALPQ
                     TALTDLRDFQPLENFSIIGNPSIVELNKVKLLMFHGQSLDDVIATVPGLSYSKPVEAM
                     KILLKSRHLSPIYGNRTPIAPESEDMLVIDDVPDIFHAGHVHITEVGRYKGTLIVNSG
                     AWQKQTKFQQTMGINPTPGICILVNLGSLQSFKKDFNY"
     gene            complement(1283..2506)
                     /locus_tag="VFX26_02635"
     CDS             complement(1283..2506)
                     /locus_tag="VFX26_02635"
                     /inference="COORDINATES: protein motif:HMM:TIGR02928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX5573404.1"
                     /translation="MDDDILNTIFDSAIKNKNIIKNRQVLTIDYVPDKLLFRTKESTA
                     IAQSLSVILKKGRPSNLLIFGKPGTGKTAVVKNVIEHLYKKTNELDINLRVPFINAKN
                     SNTPYKILYEIAELLGINKEGKTQVYFPGLSMSEATDRILDFIRRRSIKVVIVIDEID
                     SLVNRKGDDILYNFTRANERISSDQFITLIGISNSLTFKDKLDPRVKSSLSEEELVFN
                     PYTIEQLKQILIDRCKLAFYDNVIPIGVINLCAAIAGRETGDARKAIDLLRVAAEIAE
                     RSMTMKISEDHIRSAQQKIDSDTNYEILRNSTLHTKLVILSIIKSKNGSTGEIYTIYQ
                     YFCSKIQQEALTQRRMTQIVGELDQLGLITTNIVNQGRYGRTQRIKLHIHISSVKQAF
                     KNDPILSPFIDNINN"
     gene            2958..3449
                     /locus_tag="VFX26_02640"
     CDS             2958..3449
                     /locus_tag="VFX26_02640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573405.1"
                     /translation="MISNPDLSTARKKIKIELEDENGEKYNLTLQGTLSKEKIMNVIE
                     FVQLFDKNSIDSSFEHRESDTRLGSKLWNLIIENFKHHTFTSSDILRIYQDLYYQSIQ
                     LSVISIYLSRFYLKRQLSRSKNGKQWVYTLVKENLHHYQENYEKSNHPNLLSVPTVYD
                     LHL"
     gene            complement(3397..4023)
                     /locus_tag="VFX26_02645"
     CDS             complement(3397..4023)
                     /locus_tag="VFX26_02645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573406.1"
                     /translation="MSIFDFTLQYSLSDILISITLFVLSFVAFFYFGFFRESKEREKE
                     NHKFKDMLIEGYFHKFDEYNEIISDLRTKLDMIEMKINPVNIKSKQEEFVSTSDMENK
                     KSHQDMSHTIIPVTKDVIITEKKRDVDGDEALRLNTVDSILRMLEVPLTSREVQRKIN
                     KSREHTSRLLKKLYSENMVMRDGSTRPFKYKITNEGHKLLERTANLGG"
     gene            complement(4067..4435)
                     /locus_tag="VFX26_02650"
     CDS             complement(4067..4435)
                     /locus_tag="VFX26_02650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573407.1"
                     /translation="MEKNSLSYSVILNHFIVNSIFTEKQTSIIYNKVLKSKPSKNMTS
                     GAYYRQLGQCRMKTRKAVYTLILLRLLNVVDSETFSTLDQLNNQLNVMLNRSSDEIDA
                     TTLDNVISLIDNVISKLVLI"
     gene            4550..5296
                     /locus_tag="VFX26_02655"
     CDS             4550..5296
                     /locus_tag="VFX26_02655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047294 - phosphoglycerol
                     geranylgeranyltransferase activity [Evidence IEA];
                     GO_process: GO:0006650 - glycerophospholipid metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="geranylgeranylglyceryl/heptaprenylglyceryl
                     phosphate synthase"
                     /protein_id="HEX5573408.1"
                     /translation="MMEIQSTEKYILNEIKKQKTLCFPLIDSENTSKTIELAKKLEQL
                     GASAILVGGSSTSDQIELSNFVTELKNNVKIPIILFPGNITGISPAADAILFNSLLNS
                     ENPYYITGAQAQGALVINKYNLEAIPTGYLIIGDGSTAWFIGQAKSIPFNKSNIVVMY
                     ALAALYMGMRFLYLEAGSGASQNIPPEMVRTVKKFYKGILIVGGGINSAETAKKISEA
                     GADIIVIGTMIEREKDWESEFVNIMKAIRN"
     gene            5293..8790
                     /locus_tag="VFX26_02660"
     CDS             5293..8790
                     /locus_tag="VFX26_02660"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase II large subunit"
                     /protein_id="HEX5573409.1"
                     /translation="MSTHTKENKDVQIPSSYIEYHQKISEYINDSISVAQEAKKHGVD
                     ISEKVESQIGYDLPDRIAKIHEIDISSRLRTLLPKLGKELTALKISEEIALGKFGGMT
                     IEEKLNNAVRVGLSVVTEGVTVAPLQGIYNVKIKSNANRTQYLSVSFAGPIRSAGGTE
                     AAVTMLIADHVRKVMGLDKYIANSYDDEISRYVEELRIYEREVGNFQFKVSDKDVIHC
                     IGSLPVEIDGVDTDPVEVVGHRNLQRVSTNRVRGGALRVMNDGLIGRSRKLLKIVETL
                     KLEGWDWLKNLEGAIQTPEDDTVSHRMTEVITGRPVLSMQKKIGGFRLRYGRSCNTGL
                     ATIGIHPTIPILLNYAIAVGTQIKIDAPGKASTIALVDSIEAPIVELNDGSVRKIKTI
                     SEAKSVANKITKILYLGDILISYGDFLENNTQLLPSSYVEEIWALELEGKLSSTDPNS
                     YLKSFDSERLIELVQYPLEKKPSVTEAFKISQQFDMPLYPGYVFYWSALTLDEFSILI
                     TRLLENKEIIKDTNGKKFLTNDLELKKIFEKLGIFHSLYLDGSKIRIDDPDQLYILSI
                     LVTRCIEYESNLDKFLESTVPSNSDPNYVKSHILDSISKLLNVSIKEKFSSSIAVRVG
                     RPEKAADRKMKPPVHVLFPIGTNGGPTRDILKAMQKPLYIEIANRICTNCNSPSISVC
                     CEDCHSITPIRIMCSTCRYSVNSEEPNGVCPICGNRLKTHSPTSYPLKLAVEKARKHL
                     DIPPVEPLKGVKALMGKNRCAEPLEKGILRQKHKLYTFKDGTIRFDATNEPLTHFKPK
                     WIKTDITKLRDLGYLKDHIGSDLESSEQLLELLIQDIIIPIHAAEHLVKIAQFVDEEL
                     TRFYGVEAFYKIDSIDDLIGHLIVGLAPHTSVGIIGRVIGFVNSQVCLGSPIWHSAKR
                     RDCDGDADSIMLLMDIFLNFSKEYLPDRIGGLMDAPLLIQPLVFPHEVQRQAHNIDVD
                     ERYPLDFYRSSWNMEKTNVIDNIDLIKKRLGHANQFFDYKFTHSTDNIMLDESHSLYS
                     TLSTMEEKLKMQISTAKLINAVDADEVMSMVLTTHILPDIMGNLRAYSSQSFRCTKCG
                     QKYRRMPLIGRCLECHNELLQTVTRGSVEKYVQTALNICSEFKINEYLTSRINTLQAE
                     LNLLFKQDEKDQHTIIDFI"
     gene            9010..9687
                     /locus_tag="VFX26_02665"
     CDS             9010..9687
                     /locus_tag="VFX26_02665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573410.1"
                     /translation="MKQKTTHIAIFDTFKTKKNKFTGEAKRQRGIMTHLVLEKNPELR
                     TRTSIAHAIAKNNGILWQNIYSGIFKDLDEVLIPSGVVKEAGRLPLRRGPKALQLEGV
                     PFYELTETGILVASSIEELGNIRMKILESYFDNMNSNASGNDVMKKSILLLLKTIPSF
                     VIKIISAYIYAYTTGEIDTITPITIDKFRSVLKEQIYIEKEFIESYDVLSQNQKLLLK
                     DFFKIIS"
     gene            9821..10741
                     /gene="rnz"
                     /locus_tag="VFX26_02670"
     CDS             9821..10741
                     /gene="rnz"
                     /locus_tag="VFX26_02670"
                     /EC_number="3.1.26.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016891 - RNA endonuclease activity,
                     producing 5'-phosphomonoesters [Evidence IEA];
                     GO_process: GO:0042780 - tRNA 3'-end processing [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Z"
                     /protein_id="HEX5573411.1"
                     /translation="MADMKIVFLGTSAAIPTEKRSLSSIVIKRGGELLIFDIGEGMQK
                     NFLQAKLGINKKMKVFITHLHIDHCLGLLGFFQTVSLLGRTKKIDIYGESRLREFIHE
                     NFRIINIGLSFEIAIHVIDKEGVIASEDDYQISCCRADHSVPAFSYCINELPRPGIFN
                     IEKASKLSIPKGKLYNRLQNGEDVVIDGKLIKSNEVVGPKRRGRKIGISGDTRPSSKL
                     GNFFDSCDILIFESTYNHDYQTKAIETFHSTSAEAALLAKESNCSKLILTHFSSRYDD
                     PNILLDEARSIHNNVDLAEDMKTFYIPYTE"
     gene            10806..11696
                     /gene="prs"
                     /locus_tag="VFX26_02675"
     CDS             10806..11696
                     /gene="prs"
                     /locus_tag="VFX26_02675"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004749 - ribose phosphate diphosphokinase
                     activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate diphosphokinase"
                     /protein_id="HEX5573412.1"
                     /translation="MQKNNTVIISDKRNSSLAKKISLDLDAQYRNAELRVFPDGESKI
                     RLDNVAKRNCIIVHSTYPPTDQHLMQLFMIIYKCRGDGANDICVVSPYLAYTRQDKVF
                     VDGEIVSINLVGRILESLGTTKLITIDSHSPNSLNYSFKTVDLTAIPSLASYVKKNIT
                     LNNPIVISPDEGGIERARKFAGIIDVNMLSLVKTRDRFTGDISISLSEQKTLKKRDAL
                     IVDDMISTGNSIIKATEILKKNNIGDVFVICTHALLVDDAKEKLFKAGVKEVISTNSI
                     PNDFAKVDLGSLISNYFLDQ"
     gene            complement(11732..13849)
                     /locus_tag="VFX26_02680"
     CDS             complement(11732..13849)
                     /locus_tag="VFX26_02680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase/oxoprolinase family protein"
                     /protein_id="HEX5573413.1"
                     /translation="MNRVRIGIDVGGTFTKSVAIDMDTGSIIGKVTVPTSHFSQEGVS
                     TGIVESLIKLIRKEGINESNIELISHSTTQAVNALLEGDTTKVGIIGMGVGLEKNDIM
                     KRTNLGNVKLGPNKYLKTCYRFLDTSKFLDEQEISQILEELKEEGAEVLIVSEAYGVD
                     DPSNELYVMQKSDLPATAGHELTGIYGLEIRTLTAAINASILLKAIGTAKYVEKAVRQ
                     QEISAPLTIMKGDGGLTDMNTFKTKPILTVLSGPAASVAGALLHLRILNGIFIEVGGT
                     STNICVIKNGKPEVKYVTIMEHPTCIKSLDVKVVGIAGGSLVRWSGKKITDVGPRSAH
                     ISGLKYSCFAEPQELEGGQIVTFMPREGDPIDYIGIEVGAGKRFAITNTCAANALGIV
                     PDNDYAKGNQKSAQVALSILGQRLGIDMVEVANKILDISSRKILQTIRILMREYKLQD
                     NKFVLIGGGGGASVLVPMIAKKLDCQYRIADNSEVISSIGVCTASIREEREKIIENPT
                     PDDISLFVQEVEKIAISKGALPESISTQSEYIGEKSLLRVTVYGNMKLDVGTNNAKEI
                     DDEEAEVLACELFGINEGVHRIFDMKDYYIFACEIHKKKLFLKSRKQPVLVLDKYGHV
                     RISIENADIYSGSPQEMKEKIHSLMNEHGLSKDELAPQIHIVDGKRILDFSSLSSSVH
                     VLKAVTDELDKTVNNHVTIIIKL"
     gene            complement(13961..14533)
                     /locus_tag="VFX26_02685"
     CDS             complement(13961..14533)
                     /locus_tag="VFX26_02685"
                     /inference="COORDINATES: protein motif:HMM:NF024635.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase family protein"
                     /protein_id="HEX5573414.1"
                     /translation="MSRIVITGNPGVGKRTISGLLSKRLGFKIVNLNEFVIKNKLVFP
                     DKALGVYDVYIKKASLMLRKELKLYDDVIISGHLAPYLLIPSQADLVVVLRRAPQHLL
                     QTFKERNYTILKIRENITSEILGITLYDSIRKFGKEKIIEFDTTKTSSKEIIRRLIEA
                     LNDNSKRRTGNIDWMPTLKDQQELLKLVSY"
BASE COUNT         4944 a         2544 c         2426 g         4679 t
ORIGIN      
        1 gatgaacctg tcataactaa gtctaacata gatagcaatg atgagaatta caagattatc
       61 tttgatccta catacaagat aaactctgaa aatgataagg atttttttaa actatttgac
      121 agccgttatc gaaaaacttt aaaaatattg tcaatccgtt cagaaagcag gcaaataagg
      181 aaaataaaac atattaaaga tcttcggaat aaatccagat ttagttctct agataacgag
      241 aatgagcggg gaaaatttat tgattctgct tttgtcgcag gtttgataat gtctaagaga
      301 agtagaaaaa atgatgtaga gttggtgatt gatgataaaa ctggcagtat tccggtagtt
      361 tgtaaaacac gggatttgat taatgaagct tcatcacttg ttttggatca aatgttaatg
      421 ctagaaattt cgctcagtaa aagaaattca aacgattttg tcataaagga tatcattttc
      481 cctgatattc cggagcatgt tgcagccaaa tcaggtacag agtcttatgt agctctcatt
      541 tcagatttgc atgtaggtag taaatatttc atggagaatg agttcaatga ttttataagt
      601 tggttatcat cagatgatga gattgtaagc aaaatcaaat ttgtctgtat agcaggagat
      661 atagttgacg gaataggaat ttatcccaat caggataaag aattgatcga tataaatata
      721 aacaaacaaa tgtcgtatgc agcagcttta ctacaaaaaa tcccaaaacg gatgcatgtt
      781 tttctgattc ctggaaatca cgatcctggc aggagagctt tgccacaaac tgctttaaca
      841 gacttgcgtg attttcaacc cttggaaaat ttcagtatta ttggcaatcc ctcaattgtt
      901 gaattaaaca aagtcaaact attgatgttc catggccaga gtttggatga tgtaattgcc
      961 acagtacctg gattaagcta ttcaaaacct gtggaagcta tgaaaatttt gttaaaatct
     1021 agacatctgt caccaatcta tggtaaccgt acaccaattg ctcctgaatc agaagacatg
     1081 ttggtgatag acgatgtacc cgatattttt cacgccgggc atgtacatat tactgaagtg
     1141 ggtagataca aaggtacatt aatagtaaat tctggagcat ggcaaaagca gacaaaattt
     1201 caacaaacta tgggtatcaa tccaactcct ggaatatgca tattggttaa tctaggaagc
     1261 cttcaatctt ttaagaaaga tttcaattat tgatgttgtc aatgaaaggt gacaaaattg
     1321 gatcgttttt aaaagcttgt tttacagacg agatatgaat atgcagtttt attctttgag
     1381 tcctgccata gcggccttgg ttgactatat tagttgttat taatcctagt tgatccagtt
     1441 ctcctacaat ttgtgtcatt cttctctgtg ttagggcttc ttgttgaatt tttgagcaaa
     1501 aatattgata gattgtataa atttcccctg tacttccgtt cttagatttt attattgaaa
     1561 gtattactaa tttggtgtgc agagttgaat tcctcaaaat ctcgtagttt gtgtcgctgt
     1621 caattttttg ttgtgcactt cttatatgat cttcacttat cttcattgtc atcgaccttt
     1681 ctgcgatttc tgcagcgacc ctcaaaagat ctatggcctt tcgagcatcg cctgtttctc
     1741 taccagcaat tgcagcacac agattaatta caccaatagg aataacgtta tcataaaagg
     1801 caagtttaca tctgtcaatt agaatttgct ttaattgttc aatggtgtat ggattaaaaa
     1861 ctagttcctc ttcacttaaa ctgctcttta ctcgtggatc caatttatcc ttgaatgtta
     1921 agctattcga aataccgatc aaagtaatga attgatctga agaaatcctt tcattagctc
     1981 ttgtaaagtt atacaggata tcgtcacctt ttctattaac aagtgaatct atttcgtcta
     2041 tgacaattac aactttgata gatcttcgtc ttatgaaatc aagaattcta tcagtagctt
     2101 cactcatgga caggcctgga aagtagactt gcgtttttcc ttctttattg atacccaata
     2161 actccgcaat ttcatagaga attttgtatg gtgtgtttga attttttgcg ttaatgaagg
     2221 gaactcttag atttatgtcc aattcgttgg tctttttata aagatgttct ataacgttct
     2281 ttacgactgc tgtctttccg gttcccggtt ttccaaaaat taacaaatta gacggacggc
     2341 ctttttttaa tataacagat aatgattgcg cgattgccgt actttcctta gtcctgaata
     2401 atagcttgtc aggtacatag tcaatagtta agacctgcct attcttaatt atgtttttat
     2461 ttttaatcgc gctatcaaaa atagtgttta agatgtcatc atccaaatgt acacacctct
     2521 gacacccctc tctttcttct gtatctcaat ataataagct catttagtaa gtgggatgta
     2581 tataaaataa aaactcctaa atcaattttc tttaatttat ttgttaatta ttgtactttg
     2641 cagatatatg atgaacgaac caaacttcaa tgagaaatgt aggggtggaa gtaactatta
     2701 tttaggattg ttaaagtgaa gaaatgaaaa gtctccaaaa taaccccttt atttccattg
     2761 caggcttgtt aacagaaatc aacaatgtta agaatctggt ataacccctt tatttccact
     2821 ggaatatatt tagataaaga aaccataaaa ttgataacta caataaaaaa atgggtttaa
     2881 atttcagcac gaataattag ttaacaaaag ctgagctctt ggttaacttg ttaatcactt
     2941 taattgttaa gtgtgatgtg atatcaaatc ccgatctgtc aactgcgaga aagaaaatta
     3001 aaattgaact ggaagatgaa aacggagaaa aatataatct aactctacaa ggcactttat
     3061 caaaagaaaa aataatgaat gtcattgaat ttgtacaatt atttgataaa aactccattg
     3121 acagcagttt tgaacataga gaaagcgaca caagactggg ttccaaatta tggaatttga
     3181 ttattgagaa ctttaaacac cacacattta cttcctccga tatactaaga atttatcagg
     3241 atctgtacta ccaatccatt caattaagcg tcatctctat ctatttgtct agattttatt
     3301 tgaaaaggca actaagcaga tcaaaaaatg gcaaacagtg ggtatacaca cttgttaaag
     3361 aaaacttgca tcattatcaa gaaaattatg aaaaatctaa ccacccaaat ttgctgtccg
     3421 ttccaacagt ttatgacctt catttgtgat tttgtatttg aacggtctgg tactcccatc
     3481 tctcatcacc atgttttcag aatataattt ttttaataat cgagatgtat gttcacgtga
     3541 cttgttaatt tttctctgaa cctctctaga cgttagtggt acttcaagca tcctaaggat
     3601 agaatccaca gtattaagac gcaaagcttc atccccatct acatccctct tcttttcagt
     3661 gataatcaca tccttcgtca caggaattat agtatgtgac atgtcttgat gtgacttctt
     3721 attttccata tcacttgtag aaacaaattc ctcctgtttg cttttaatgt ttaccggatt
     3781 tattttcatt tcaatcatat ccagtttagt ccgtaaatct gaaataatct cattatattc
     3841 atcaaattta tgaaaatatc cctcaatcaa catatcttta aatttatgat tctctttttc
     3901 tcgttctttc gattctctga aaaacccaaa ataaaaaaag gccacaaacg atagcacgaa
     3961 aagtgtgatt gaaattaaga tgtctgataa tgaatattgc aaggtaaaat caaatatact
     4021 catgtgatat catgtgattt agagaaacat atttattaaa atttttctat atcaatacca
     4081 gcttactaat cacgttatca atcaatgaaa tcacattatc caatgtggtt gcatctattt
     4141 catcacttga tctatttaac atcacattca attgattatt caattgatcc agcgtagaaa
     4201 atgtttcact gtcgacaaca ttgagcaggc gcaataatat caatgtataa acagcctttc
     4261 ttgtcttcat cctacactgt cctaattgtc gataatacgc accagaagtc atgtttttac
     4321 tgggtttcga cttcaatact ttattataaa taattgatgt ttgtttctct gtaaatatag
     4381 aatttacaat aaaatgattc aaaatcaccg aataactcaa actgttcttt tccatttact
     4441 atacaaactt gtatagtaca gtattctaat taacttttgc attcaaataa ctaagcagta
     4501 ctttctaagt ctcatgagat tattattata cgagtaatta ctttgagaaa tgatggaaat
     4561 acaaagcacc gaaaaataca ttttgaatga aatcaagaaa caaaaaacct tatgctttcc
     4621 actaatagat tctgaaaaca cctccaagac catagaatta gcgaaaaaat tagaacagct
     4681 tggagcttca gcaatattgg tcggtggttc atccacatcg gatcaaattg aactatctaa
     4741 ttttgtgaca gaattaaaga acaatgtcaa gatccccatt attttatttc caggaaatat
     4801 cacaggaata tcaccagctg cggatgcaat tttgttcaat tcattactta attctgaaaa
     4861 tccctactac ataacaggcg cacaagcaca aggagcatta gtcatcaaca agtataatct
     4921 agaagcaata ccaactggtt accttatcat tggtgatgga tccacggcat ggttcatagg
     4981 tcaagctaaa tctattcctt tcaacaaatc aaatatcgtt gtaatgtacg ccctagcagc
     5041 actctacatg ggtatgcgat ttttatatct agaagcaggc tcaggcgcat cacagaatat
     5101 cccaccggag atggtaagga ctgtaaaaaa attctataag ggaattctaa tagttggtgg
     5161 aggaatcaat tcagctgaga ctgccaaaaa aatatctgaa gcgggtgctg atatcatagt
     5221 tattggaacc atgattgaaa gagaaaaaga ctgggaatca gaatttgtta atattatgaa
     5281 agcaataaga aattgagtac tcataccaaa gaaaacaaag atgtccaaat tccgtcgtct
     5341 tatatagaat atcatcaaaa aatttcagaa tacatcaatg attcaatatc tgttgcgcaa
     5401 gaagctaaaa aacacggtgt tgatatatcc gaaaaagtag agtcacagat tggttatgac
     5461 ttaccggaca ggatagcaaa gatacatgaa atcgatatct caagtaggtt aagaacgctt
     5521 cttccaaaat taggaaagga actaacagca ttaaagatat ccgaagaaat agcgcttggt
     5581 aaatttggag ggatgaccat cgaggaaaaa ctaaacaatg cagtaagagt tgggctttct
     5641 gttgttacag aaggcgtcac ggtagcaccg ttgcaaggga tttataatgt caaaataaaa
     5701 tctaatgcca acagaacaca gtacctatcg gtttcttttg ctggaccaat aagatctgca
     5761 ggaggaaccg aagctgccgt aacaatgctt atcgccgatc atgtcaggaa agttatggga
     5821 ttagacaagt acatcgcgaa ttcatatgat gatgaaatta gtagatatgt tgaagaatta
     5881 aggatttatg aaagggaggt cggcaacttc cagttcaagg tttctgataa ggatgttatt
     5941 cattgtatag gatctcttcc tgtagaaatt gatggtgttg acacggatcc tgtagaagtg
     6001 gtaggtcata gaaatctgca aagagtttct actaatagag ttcgtggagg tgcattgaga
     6061 gtaatgaatg atggtttgat aggtagaagc agaaagttat tgaagatagt tgaaactcta
     6121 aaattagaag gatgggattg gctaaaaaat cttgaaggag caattcaaac cccagaagat
     6181 gatacagtat ctcacagaat gactgaggtc ataactggaa ggcctgtact ttcaatgcag
     6241 aaaaaaattg ggggttttag attgcgatat ggaagaagct gtaataccgg attagctaca
     6301 attggaattc atccaaccat tccgatttta ttaaattatg caattgctgt cggtacacaa
     6361 ataaagatag atgcaccagg taaggcttct accatcgcac tagtagacag tatcgaagca
     6421 ccaattgtag aactaaatga tgggagtgtc aggaaaataa aaacaattag tgaagcaaaa
     6481 tccgtagcta ataaaattac aaaaattctc tatttgggag atattttgat aagttatggg
     6541 gactttctcg aaaataatac tcaattactc ccctcatcat atgttgaaga aatatgggct
     6601 ctcgaactag aaggaaaact aagtagcact gaccctaatt catacttgaa aagctttgac
     6661 agtgaaagat taattgagtt agtacaatat ccattagaaa aaaaaccatc cgttactgaa
     6721 gcgtttaaaa ttagtcaaca gtttgatatg cctctttatc ctggatacgt cttttattgg
     6781 agtgctttaa cactggatga atttagtatt ctaatcacca gattactaga aaacaaagag
     6841 ataataaaag atactaatgg aaaaaagttt cttactaatg atttagaatt aaaaaaaatt
     6901 tttgaaaaac ttggaatatt tcattcactt taccttgatg gcagtaaaat aagaatagat
     6961 gatcctgatc aactttacat tctatcaata ttggtgacca gatgtatcga gtacgaatcg
     7021 aatctcgata aattcttaga atcaactgtt ccctcaaact ctgatccaaa ttatgttaaa
     7081 tcacatattt tggattctat ttctaagtta ctaaatgtta gtataaaaga aaaattttct
     7141 tcttcaattg ctgttcgagt tggacgtcca gaaaaagcag ccgatagaaa aatgaaacct
     7201 cctgttcatg tcttattccc aataggaacg aatggtggcc caactagaga tattctgaaa
     7261 gcaatgcaaa aaccacttta tattgaaatt gctaacagaa tttgtacgaa ttgcaactca
     7321 ccatccattt ctgtttgctg tgaagactgc cattctatta ccccaattag aataatgtgc
     7381 tctacctgca gatactcagt taacagtgaa gaaccaaacg gagtttgtcc tatttgcgga
     7441 aatcgtttaa aaacacattc accaacgagt tatcctctca aacttgcagt tgaaaaagca
     7501 agaaagcatc ttgacatacc accggttgag ccattaaagg gagttaaagc cctaatgggt
     7561 aaaaatagat gcgcggaacc tctggaaaag ggaatcctga gacagaagca taaactctat
     7621 acatttaagg atggaactat acgttttgat gcaacaaatg aacctttaac ccactttaaa
     7681 ccaaaatgga tcaaaacaga tattacaaaa ttaagagatc tcggatatct caaagatcac
     7741 atagggagtg acctagaatc atcagaacaa ttactagaac tactcataca ggatataata
     7801 atacccattc acgctgcaga acacctcgtg aaaattgctc agtttgtaga tgaagaactg
     7861 acaagattct atggagttga ggcattttat aaaatagatt caatagatga tttgattgga
     7921 cacttgattg ttggcttagc accacatacg tccgtaggaa taattggtag agtcattgga
     7981 tttgtcaatt cccaggtatg tcttggttca cccatctggc attctgcaaa acgaagagat
     8041 tgtgatggtg acgcagactc tataatgtta ctaatggata tctttctaaa cttttcaaag
     8101 gaatatctgc ctgatagaat tggtggacta atggacgcac cattacttat tcaaccttta
     8161 gtatttccac atgaagttca aaggcaagct cacaacatag atgttgatga gagatatcca
     8221 ttggattttt atagatcttc ttggaatatg gaaaaaacta atgtaattga caacatcgat
     8281 cttatcaaaa agagactagg acatgcaaat caattctttg attataaatt cactcattcc
     8341 accgacaata ttatgctgga tgaatcacat agtttgtatt caactttgag cacaatggaa
     8401 gaaaagctaa aaatgcaaat aagtactgcc aagctaatta atgctgttga tgctgacgaa
     8461 gtaatgtcaa tggttttaac gactcacatt ttacctgata tcatgggaaa tttgagggcc
     8521 tattcatcac agtcatttag gtgtactaaa tgtggacaaa aatatagaag aatgccactg
     8581 attggtcgat gcctggaatg tcataatgaa ttattacaaa ctgtaacacg gggttcggta
     8641 gagaaatatg tacagaccgc attaaatatc tgttcagaat ttaagataaa cgaatatcta
     8701 actagcagaa taaacacatt gcaagcagaa ttaaacttgt tatttaaaca agacgaaaag
     8761 gatcagcaca caattattga tttcatctaa tctcaaaaca ggtattgtca atgtttgaaa
     8821 ttccgggtag tgtactgatc aagtgcagga tattataatt ttgccaagaa aaatcacaca
     8881 atttgagtaa tttgcaattc ataacacaaa ccaaaataat aatcagaaat catgcaatta
     8941 gaatataaaa gacttgattg ataattgata attgaaaatc atgctcataa taagtggtga
     9001 gagtgctttt tgaagcagaa aacaactcac attgctatct ttgatacttt caaaacaaag
     9061 aaaaataagt tcactggtga ggctaagaga caaagaggaa ttatgactca ccttgttttg
     9121 gaaaaaaatc cagaactaag aacacggaca tcaattgcac acgcaatagc aaagaacaat
     9181 ggtatattat ggcagaatat ctactccggc atattcaaag atctcgatga agtattaata
     9241 ccatccggcg tagttaagga agcgggtcgt ctgccactga gacgtggacc aaaggcactc
     9301 caattagagg gagttccttt ctacgaatta acagaaacag gaattttagt tgcatcatcc
     9361 attgaagagt tgggaaatat cagaatgaaa atacttgaat cttacttcga taatatgaat
     9421 agtaatgcat ctggtaatga cgtcatgaaa aaaagtattt tactcctatt aaaaacaata
     9481 ccttcatttg taataaaaat tattagtgca tatatttatg cttacaccac cggtgaaata
     9541 gataccatca ctcctattac tattgataaa tttcgttccg tcctaaaaga acagatttat
     9601 atagaaaaag aatttatcga atcatatgat gttctgtctc aaaaccaaaa actcctctta
     9661 aaagattttt tcaaaataat aagctaattc cggttcaatt caccatctta ctcagtagtt
     9721 tgcgtttaca agacgaatgt attgatgatg agatttctca tggtgttact gttcaaacaa
     9781 acgcttataa tttactggat cacttattga tgtataattt atggccgaca tgaagatagt
     9841 atttcttgga acatccgcag ccattccaac tgaaaaaagg agtttatcct caattgtaat
     9901 taaaagagga ggtgaattgt taatatttga catcggtgaa ggaatgcaaa agaattttct
     9961 tcaagccaaa ctaggaataa ataagaaaat gaaagtattc ataactcatt tgcatattga
    10021 tcattgtcta ggactattag gattttttca aaccgtgtct cttctcgggc gcacaaaaaa
    10081 aattgatatc tatggcgaat caagattgag agaatttatc catgagaatt ttcgtattat
    10141 caatattgga ttgtcatttg aaatcgccat tcacgtaatt gataaggaag gagtaattgc
    10201 gtccgaagat gattatcaga tcagctgttg tagagctgac cactcagtgc ccgcattttc
    10261 ttattgcatt aatgagcttc ccagaccagg aatattcaat attgagaaag cttccaagct
    10321 ttccattcct aagggaaagt tgtataatag gttacaaaat ggtgaagatg tagttattga
    10381 tggtaaatta ataaaatcaa atgaagtagt tgggcccaaa aggaggggcc gtaaaatagg
    10441 tatatctggg gataccagac cgtcttctaa acttggaaat ttttttgatt catgcgatat
    10501 cttaattttc gaatcaactt acaaccatga ttaccaaact aaggcaatag agacatttca
    10561 ttctacatct gctgaagcag ctctacttgc caaggagtca aattgtagca agctaattct
    10621 cacacatttc agttcaagat atgatgatcc aaacattctc ttggacgaag caagatctat
    10681 tcacaacaac gtagatttag ctgaagatat gaaaaccttt tacattccat atacagaata
    10741 actaattcgt taagctaatt taacactttt aaatagttgt tgaaaaatat ttccatattc
    10801 ttacattgca aaaaaacaac actgtaatta tttcggataa gcgaaactct tctctcgcaa
    10861 aaaaaatttc attagatttg gatgctcaat atagaaatgc cgaattacgt gtgtttccag
    10921 atggagaaag caaaattaga ctagataatg tggccaaaag gaactgtatc atcgttcatt
    10981 ctacatatcc tcctacagat cagcatctca tgcaactatt catgattatc tacaaatgca
    11041 gaggagacgg tgcaaacgat atttgtgttg ttagtccata tttagcatac acaagacagg
    11101 ataaggtatt tgttgacgga gagatagtaa gtatcaattt agttggacga attttggagt
    11161 cattaggaac tacaaagtta ataactattg atagccatag tcccaactca cttaattatt
    11221 cttttaaaac agtggattta accgctattc catctttggc tagttatgtt aaaaaaaata
    11281 ttacactaaa caaccccata gtcatttccc cagatgaagg aggaatagaa agagctagaa
    11341 aattcgcagg aattatcgac gtaaatatgc tatcattagt caaaacacga gatagattca
    11401 caggagacat atcgatttca cttagtgaac aaaaaacatt gaaaaaaaga gacgctctta
    11461 ttgtagatga tatgataagt acaggtaata gtattataaa agcgactgaa atactgaaaa
    11521 aaaataatat aggtgatgta tttgtaatat gtactcatgc actcttagtc gatgatgcca
    11581 aagaaaaatt attcaaagcg ggtgttaagg aagtaatatc tactaattca attcccaatg
    11641 attttgctaa agttgattta ggcagtttaa tatcgaatta tttcttagat caatgatccc
    11701 tagtttttaa caggcaaggc aatatttccc tttatagttt tatgattatt gttacgtgat
    11761 tattgacagt tttatccagc tcgtcagtta ctgcttttag gacatgtaca gaagacgaca
    11821 aactagaaaa atccaaaatt ctttttccat caacaatatg aatctgtgga gcgagttcat
    11881 cttttgagag accatgttca ttcattaatg aatgaatttt ttctttcatc tcttggggac
    11941 taccactgta tatatctgca ttttcaatag atattctaac atgaccatat ttatctagta
    12001 ctaaaacagg ttgctttctt gatttcaaaa acaatttctt tttatgtatt tcacacgcaa
    12061 aaatgtaata atctttcata tcaaatattc tatgcacacc ttcattaata ccaaataact
    12121 cacacgccaa tacctctgct tcctcatcat caatttcttt tgcattattg gtacccacat
    12181 ctaacttcat attaccataa acagtaacac gcaaaagaga tttttcacct atatattcgg
    12241 attgagtaga aatcgattca ggaagtgcac ccttagaaat tgcaattttt tcaacttcct
    12301 gaacaaaaag tgatatgtca tcgggagtag gattttctat tatcttttcc ctctcttccc
    12361 gtattgacgc agtacaaaca ccaatagagg agatgacttc cgaattgtca gcgattctat
    12421 attgacaatc caatttcttt gcaatcattg gaacaaggac cgatgcacca ccaccaccac
    12481 ctattaatac aaatttatta tcttgtaatt tgtattctct cattaaaatt ctaattgtct
    12541 ggagtatctt tctacttgaa atatcaagaa ttttattagc tacttctacc atatctatac
    12601 ctaatctctg tcccaaaatt gataacgcca cttgtgcaga tttttgattc ccttttgcat
    12661 aatcattgtc agggacaatt cctaaagcgt tggcagcaca agtattggtt attgcgaacc
    12721 ttttaccagc accaacttca attcctatat aatcaatcgg gtctccttct ctaggcataa
    12781 atgttactat ttgtcctcct tccaattctt gcggttcagc aaaacatgaa tatttcaaac
    12841 cggaaatatg agcagaccta ggtcccacat cggttatctt tttcccggac catctcacga
    12901 gagaaccacc agctattccg actactttca catctaaaga ttttatgcat gttggatgtt
    12961 ccattatggt aacgtatttg acctcaggtt taccattttt tattacacaa atatttgttg
    13021 atgtaccgcc aacttctatg aaaattccat taagtatcct taaatgcagc agagctcctg
    13081 caacacttgc agcaggtcct gataaaacag ttaaaattgg tttagtttta aaagtattca
    13141 tatcagtcag accgccatca cccttcatta ttgtaagtgg agcagagatt tcttgttgac
    13201 gtaccgcttt ctcaacgtat tttgcagtgc caatagcctt taataatata ctagcgttta
    13261 ttgcggcggt caaggtcctt atttcaagac catatattcc cgtcaattca tgtcctgcag
    13321 ttgctggtag gtctgatttt tgcataacat ataattcatt actaggatca tcaacaccat
    13381 acgcttcact aactatgagg acctctgctc cctcttcctt caattcttct aatatttgag
    13441 aaatctcttg ttcatctaag aactttgaag tatccaaaaa tctataacat gttttcaaat
    13501 atttattcgg tccgagttta acattaccta agtttgttct tttcatgata tcattttttt
    13561 ctaaacctac ccccatacca ataattccaa cctttgttgt gtcaccttct aataatgcat
    13621 taacagcctg agttgtacta tgagatatta attcaatatt tgattcatta ataccctctt
    13681 tgcgaataag tttgattagt gattctacaa taccagttga tactccctct tgcgagaaat
    13741 gtgaagttgg aaccgtaacc ttcccgatta tactaccagt atccatatct attgctactg
    13801 atttggtaaa cgtcccccca acatcaatac caattcttac cctgttcatt atgaaaaccg
    13861 catgatgttt tttctcatca tcatttatta tttaaatcct gttagatttg ggtgaaacaa
    13921 agtcttggta ttaccagcag catagtgatg tgtggtagag ctaatatgat actaatttca
    13981 aaagttcttg ttgatctttt aatgtaggca tccaatcgat atttcccgtt cttctttttg
    14041 aattatcatt caacgcctca attaagcgtc tgataatttc tttgcttgac gtttttgtag
    14101 tgtcaaattc aataattttt tcctttccaa attttcttat gctatcatat aaggttattc
    14161 cgagaatctc actagttata ttttccctaa ttttcaaaat tgtatagttt ctttctttaa
    14221 atgtctgtaa aagatgttgt ggtgcacgtc gtaaaaccac gactagatcc gcctgactgg
    14281 ggattagtaa gtatggagca agatgtcctg aaataatcac atcatcatat agttttaatt
    14341 cctttctaag cattagagat gcttttttta tatagacatc atagacacct aatgccttat
    14401 ctgggaatac gagcttgttt tttattacaa attcatttaa attgactatc ttaaatccta
    14461 gtctttttga caacaaccca ctgatagtac gttttccaac tcccggattg cctgtaatga
    14521 cgattcttga caacttttaa aattacagta actctaattt tattctgtcg tttttaattt
    14581 gttattaatt cct
//
LOCUS       DASUMD010000095         4417 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1239087, whole genome shotgun sequence.
ACCESSION   DASUMD010000095 DASUMD010000000
VERSION     DASUMD010000095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4417)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4417)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4417
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1239087"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            47..406
                     /locus_tag="VFX26_02690"
     CDS             47..406
                     /locus_tag="VFX26_02690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573415.1"
                     /translation="MGQYDIIISFDKKEIKAKEELEGVIKINYPGRFDSVVINSQIEN
                     TSEIFSFIKLNDKKINYAYARMPILRHDIKHPNEIKFTVITEHVPQVNSNVKFRASII
                     QEHKEVANDIAFLKIVP"
     gene            complement(514..975)
                     /locus_tag="VFX26_02695"
     CDS             complement(514..975)
                     /locus_tag="VFX26_02695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HEX5573416.1"
                     /translation="MNNHAAGISIIAFIITVTASMSYYQFVYTPEANAKPQLPEEILN
                     PSEPVKVSILEGSALPSQTKNFDPKEIRGTLGISNKIIWTNGDTTAHTVSTDNQYDDQ
                     ISGPFNSMDTIGLVLPQQTYEFTFTKDGEYPYHCEPHPWMTGKVIIVKSFA"
     gene            complement(1102..2712)
                     /locus_tag="VFX26_02700"
     CDS             complement(1102..2712)
                     /locus_tag="VFX26_02700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b N-terminal domain-containing
                     protein"
                     /protein_id="HEX5573417.1"
                     /translation="MGVSLHRENSLTRFFRWTYAGVDRTIFMGLKFTFPSRFVSPLGF
                     LGMLTFVIFIILGITGALLMLYYEPILDRAWDSVKNINDVIPYGFHLRNIHYHASNAM
                     VMVALLHMYYQYFSGRYKIRNEILWVTGIILGVLTILEAFTGYDIIFSERAELAISIA
                     ASLTNSIPILGPQMTEAFFGGGFHDFVLRFYAFHVFLLPIAMLGLMVVHFPRFLVFDI
                     PMVMAITGAIMLTGGVFPVDMGLKFDPNVPPGITVPEWYLTGLYSFLRSAYDKFTTGV
                     AWPGLFIFALLIIPFIDRYKKFSWKDRPIITAIGITSLAQIIVTTYWGFYIDPDRTKS
                     LLERLVIDPVFLYLVMILLVPLSFGFTYMMIKLAKNAEANAKIQPKKPTTKSSINLTE
                     KWIYAIFVALLAFQIYLNIAAYYAVLNGMKNYSLFIIGIMMLVFAGMFHIFRHGKSMQ
                     KAPPPTPTIPPMPAKAKPPSLTQPVGPEAPQIAANTKVLGDSAAKEKTLAPSAKGSTP
                     SSQSVQSVNKTESASAHSEQKLVSDEKK"
     gene            complement(2693..3304)
                     /locus_tag="VFX26_02705"
     CDS             complement(2693..3304)
                     /locus_tag="VFX26_02705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HEX5573418.1"
                     /translation="MAQRPSPKSGGKVSRRDFIKLMAAAGTVMTFAVFADWGKFLPPP
                     KQQSTERQMVELPDGSQANVNSFPVNHAEAVIFPKTNDPVLNKESFRTWQFIRLPEEL
                     GGKKNDASAFRMYSMVCLHLWCLWKYWPQDGRKRGECPCHGSMYDPLTGKAFAGPASL
                     QAPPSNVLPMLDLEITSDGNVWIKPPNWSPNGNGVVGYGRFLT"
     gene            complement(3444..3857)
                     /locus_tag="VFX26_02710"
     CDS             complement(3444..3857)
                     /locus_tag="VFX26_02710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HEX5573419.1"
                     /translation="MIKKVLNGATKEREIRVSAGQTTIFLWKGENVFSTPSMISEMEE
                     TCRLLLKEEFLQDEEWDSVGTLVNVRHLKATPVGTQVKLKAKVINVNDRRVTFEVEAV
                     DMIEKIGEGLHERAIINVPEFRERFNNKLKKLENV"
     gene            complement(3914..4045)
                     /locus_tag="VFX26_02715"
     CDS             complement(3914..4045)
                     /locus_tag="VFX26_02715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573420.1"
                     /translation="MFESMIQQIVPATWESFGVWIPLAFGLAVGLAYAIASGLRRKK"
     gene            4216..>4417
                     /locus_tag="VFX26_02720"
     CDS             4216..>4417
                     /locus_tag="VFX26_02720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L44e"
                     /protein_id="HEX5573421.1"
                     /translation="MKMQKEMKKFCPKCKKHTIQSVAIYKKGKDRKTAEGARRHAEDK
                     KGYGGQKFPELKRTAKTTKKITL"
BASE COUNT         1432 a          846 c          770 g         1369 t
ORIGIN      
        1 aatgccttaa cgataattaa aattgaacag catttaatct acaataatgg gacaatacga
       61 cataatcatt agtttcgaca agaaagaaat caaagcaaaa gaagaactcg aaggagtaat
      121 aaaaattaac tatcccggcc gattcgacag cgttgtaata aattcacaga tagaaaatac
      181 tagtgaaatt tttagtttca taaaactcaa tgataaaaaa atcaattatg cgtacgcaag
      241 aatgcccata ctaagacatg acataaagca tccaaatgaa attaagttta ctgtaatcac
      301 agaacacgtc ccgcaagtaa attcgaacgt taaatttaga gcctctataa ttcaagaaca
      361 taaggaagtt gccaatgaca ttgcattcct caaaatagta ccatgaatta aaatgccaat
      421 ggtcaataca gatatttagc taaattagat tatagaattt gtagaaccct aatctctaga
      481 atagaaaggg tatttgaaat gaatcataaa aagttaggcg aaactcttta caataattac
      541 cttacctgtc atccatggat ggggttcaca atgatatgga tactctccat ctttagtaaa
      601 cgtgaattcg tatgtttgtt gcgggagaac taaacctata gtatccattg aattaaaggg
      661 gccactaatc tgatcatcat attgattatc agtactaact gtgtgtgctg tggtatcacc
      721 gttagtccag attattttgt tgctaatacc taatgtgccc cttatttctt tcggatcaaa
      781 gtttttcgtc tgcgagggca gagctgaacc ctctaggata gatactttca ctggttctga
      841 gggattcaga atctcctcgg gtaattgcgg cttagcattt gcttctggag tataaacaaa
      901 ttgataataa ctcatacttg cagttacagt aataataaat gcaatgatac tgattcctgc
      961 agcgtgatta ttcatttgtc atctgcttta atttgacgaa tatatataat attaagatta
     1021 gtcatcattt gaagatcaag tggcttggta tttgacatat taatatcata cctagcttgt
     1081 aattgtgaat acaatgacgg cctatttttt ttcatcagaa accaattttt gctcactatg
     1141 ggcactagct gattcagttt tatttacaga ctggactgac tgagatgatg gtgtactgcc
     1201 ctttgcagag ggggccaatg ttttttcttt agccgctgaa tctccaagca cctttgtatt
     1261 tgcagcaatt tgaggagcct ctggacctac tggctgtgtc aatgaagggg gctttgcttt
     1321 cgcaggcatt gggggaatag ttggcgttgg gggaggtgcc ttttgcatgg atttaccatg
     1381 tctgaatata tgaaacattc ctgcaaaaac aagcatcatg atacctatga taaagagtga
     1441 gtagtttttc attccattca aaactgcgta atatgcagcg atattaagat aaatttggaa
     1501 tgccagtaag gcgacaaata ttgcgtagat ccatttttct gttaaattta ttgagctttt
     1561 ggttgttggt ttttttggtt gaatctttgc atttgcttct gcattttttg ctaatttaat
     1621 catcatatag gtgaatccga acgacaatgg cacgagtaaa atcatgacca gataaaggaa
     1681 aacaggatct attacaagtc tttctagtaa cgatttagtt ctatcaggat caatgtagaa
     1741 gccccagtat gttgttacta tgatctgggc caaacttgta attcctattg cagttatgat
     1801 tggtctatct ttccatgaaa atttcttgta tctgtcaata aacggtatta taagcaatgc
     1861 aaaaatgaac aaacctggcc aagccacacc cgtcgtaaat ttatcatatg cacttcgcag
     1921 gaatgagtag agaccggtca aataccattc aggtactgtg ataccaggag gaacatttgg
     1981 atcgaacttc aatcccatat ccacaggaaa tactcctccc gttagcataa tcgcacccgt
     2041 tattgccatt accattggaa tatcaaaaac caagaatcta gggaaatgga caaccattag
     2101 acccaacatt gcaatgggta ataggaatac atgaaatgcg taaaacctca gtacaaaatc
     2161 atggaatcct cctccaaaga aagcttctgt catctgtggt cccaatatcg ggatggaatt
     2221 agtaagcgaa gccgcaattg aaatggccaa ttcagctctt tcgctgaaaa taatatcata
     2281 tcccgtaaag gcttctaata ttgtaagcac acctaggatt attcccgtaa cccagagtat
     2341 ttcgtttcta atcttgtacc taccactaaa atactgatag tacatatgca gtaacgctac
     2401 catcaccatt gcatttgatg catggtagtg aatgtttcta agatgaaaac catatggaat
     2461 aacatcattg atatttttta cactatccca tgctctatct agaataggct catagtaaag
     2521 catgagtaat gcccctgtaa ttccgagaat tatgaaaatt acaaaagtaa gcattcctaa
     2581 aaatccaagt ggacttacaa acctactagg gaatgtaaat ttgagcccca taaagatagt
     2641 ccggtctact ccggcgtatg tccacctaaa aaaacgagtc agactatttt ctctatgtaa
     2701 ggaaacgccc atatcccact accccattac cattaggact ccaatttgga ggtttgatcc
     2761 atacgttacc atcagaagta atctctaaat ctaacatagg taatacatta gaaggaggag
     2821 cctgcaatga tgcaggacct gcaaatgctt taccagtaag aggatcatac atgcttccat
     2881 ggcatggaca ctcacctctt tttcttccat cctgtggcca atatttccat agacaccaaa
     2941 gatgaagaca aaccatacta tacattctga aggcagaagc gtcgttcttt tttccaccta
     3001 gttcttcagg caatctaata aattgccacg ttcgaaaaga ttccttattt aatactggat
     3061 catttgtttt aggaaaaatg acagcttctg catgattaac aggaaaacta ttaacattgg
     3121 cttgagaacc atcgggaagt tccaccattt gtctttcagt tgattgctgt tttggaggtg
     3181 gaagaaattt tccccagtct gcaaaaactg cgaaagtcat aaccgtacct gcagcagcca
     3241 ttagttttat aaaatcacgt cttgatactt tacctccact tttcggagaa ggccgctgag
     3301 ccatacaaat ctacagactc gaaatatatc atataaactt ttattcactg aacattattt
     3361 cttttttgta aaaagccaaa taatttctta aaatctgttc ttggtacagc aaattaaact
     3421 gtaatgatta tattagtcta gatttacaca ttttctaatt tttttaattt attgttgaat
     3481 ctttctctga attctgggac gttaataatt gccctttcat ggagtccttc gccaattttt
     3541 tcaatcatat ctaccgcttc tacttcaaaa gtaactcttc tatcattcac attgattact
     3601 ttagctttca gctttacttg tgtcccaacg ggagttgctt tcaagtgtct gacattaaca
     3661 agagttccta ctgaatccca ttcttcatct tgcaaaaatt cttcctttaa caacaatcta
     3721 caggtttctt ccatttctga gatcatggac ggagttgaaa atacgttctc ccctttccac
     3781 aagaagattg tagtctgccc tgcgcttact ctaatttctc tttccttcgt agctccattc
     3841 agtacttttt taatcatgat gagattccat tttcttagac attataataa aaataaaaaa
     3901 ggtcggctag atactacttt tttcttcgta agccggatgc tattgcgtaa gctagaccta
     3961 cagctaatcc aaatgcaagt ggtatccata ctccgaagct ttcccaagtt gccggtacta
     4021 tttgttgaat catgctttcg aacattatta tgtgtggtat aaaagtaatc agtatattag
     4081 attttctcaa gcaataagtt atagctagat tctcttaaat gtaaaagtca aaatctcggt
     4141 attatcttta atctgagata cacttgatgg attgtacgtt gcccttaaat tacccacaga
     4201 tggctatttg aaaatatgaa aatgcagaaa gagatgaaga aattctgtcc aaagtgtaag
     4261 aagcacacca tacaatcagt cgccatctat aagaaaggca aagatagaaa aaccgcagaa
     4321 ggggcaagaa gacatgctga agataaaaaa ggatatggtg gacaaaagtt tccagagcta
     4381 aagagaactg ccaaaactac aaagaaaatt actctaa
//
LOCUS       DASUMD010000096         4195 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1239170, whole genome shotgun sequence.
ACCESSION   DASUMD010000096 DASUMD010000000
VERSION     DASUMD010000096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4195)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4195)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4195
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1239170"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..378
                     /locus_tag="VFX26_02725"
     CDS             <1..378
                     /locus_tag="VFX26_02725"
                     /inference="COORDINATES: protein motif:HMM:NF012897.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573422.1"
                     /translation="RIRWVIIGDNNYGEGSSREHAAMTPRYLGCCAVIEKRFARIHET
                     NLKKQGILALTFVDPADYDKILEDDRLSILDLKNFQEGKYLRGIIHHSNTTNDEFMLS
                     HSYNSSQIEWFKAGSALNLMRTK"
     gene            complement(397..1035)
                     /gene="pdxT"
                     /locus_tag="VFX26_02730"
     CDS             complement(397..1035)
                     /gene="pdxT"
                     /locus_tag="VFX26_02730"
                     /EC_number="3.5.1.2"
                     /EC_number="4.3.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA];
                     GO_process: GO:0042823 - pyridoxal phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase glutaminase
                     subunit PdxT"
                     /protein_id="HEX5573423.1"
                     /translation="MNNELLIGVLALQGDVEENIKATTDALREMNLKGKVISVRYPDE
                     ILKVDGLIIPGGESTVMGLLLSIKNGLLDSVTKVLQNRIPIMGTCAGMIVLAKKSYDK
                     VVGNKKQLLLGALDIEIERNSFGRQYDSFESTLEISGIGNDFKGIFIRAPTVISTGSR
                     VQILSKFDGKIVAVQQENIIGTSFHPELSGDNRMHRLFIELITKWKKANNRQ"
     gene            complement(1032..2003)
                     /gene="pdxS"
                     /locus_tag="VFX26_02735"
     CDS             complement(1032..2003)
                     /gene="pdxS"
                     /locus_tag="VFX26_02735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0042823 - pyridoxal phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase lyase subunit
                     PdxS"
                     /protein_id="HEX5573424.1"
                     /translation="MTISQVGAYPLSKGIKISTVDSKQIVSGTALIKRGFAHMQKHGV
                     IMDVTNVEQAQIAEDAGAVAVMVLDKLPYDVRHAGGVARTASVKVIQAVLDSVSIPVM
                     AKCRIGHSSEASILEETGVDMIDESEVLSPADESRHIWKWNYTTPFVNGAKNLGEALR
                     RIEEGAALIRTKGEPGTGDVSHAVTHIRMVNNEIRKLKGIYDNNDDQELIKISREIQS
                     SFEIVKETGRLGRLPVVNFAAGGISTPADAALLMKLGCDGIFVGSGIFKAEDPLERAK
                     AVVIATTYFDDPKTVLEAQKMIDEKKSMLGLDTKNLDLRMQERGPTI"
     gene            2192..2890
                     /locus_tag="VFX26_02740"
     CDS             2192..2890
                     /locus_tag="VFX26_02740"
                     /inference="COORDINATES: protein motif:HMM:NF013621.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyltransferase/cytidyltransferase family
                     protein"
                     /protein_id="HEX5573425.1"
                     /translation="MFKEHHILRIELNRHYYFNNVKFMIEPSDKAILTAIYVSSLDPE
                     ILPLEYLKERTTISDEMFKLKIDEMTKNGFVEKSDTLKLTFLGRGLLKIVLIGGVFDI
                     VHPGHIHTLMDAKSQGDVLVVVVARSSTALKINKQRKIYHDEILRRELVSSIRCVDYA
                     IIGREGTLYDTVEFVKPDIIALGYDQIHTEKEIAVNCSKRGIDTRIIRLNTPIPGSKS
                     TQIKEGLGHSIYDI"
     gene            complement(2873..3589)
                     /locus_tag="VFX26_02745"
     CDS             complement(2873..3589)
                     /locus_tag="VFX26_02745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF120 domain-containing protein"
                     /protein_id="HEX5573426.1"
                     /translation="MQDIKSEYVITLAKLLLKGAKDNFIEFTSTDIGIEINKSQQAAS
                     KIILELQEMKYVERVKKGHGFMIRVTEEGLSAVKKMSEFLYMALDSSPGNVHFNGTLV
                     SGMGEGKYYMSLEGYRKQFKKKIGYIPFPGTLNIRIDDPLSIENREKIESFRFHFIDG
                     FKDSERTYGWVKCYPAIINGNENIQSDLLILERTHHDNNMLEIIAPVNIKQVLRLKNG
                     DDVKVTLQTSKNKTESYVIN"
     gene            complement(3596..>4195)
                     /locus_tag="VFX26_02750"
     CDS             complement(3596..>4195)
                     /locus_tag="VFX26_02750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573427.1"
                     /translation="GKKVIAFLDGDRAADLILKELQGLVKIDKVLRAPTGKEVEECTP
                     LEITEILKDVIEPTVEQYEVPIQHQKGVKKSKIYENNNLAYQEPSNFNNGEKLEDDPQ
                     ITSAVKEVYPQINETLEAMILDNSMQVLLKVPVSEIIKRLDSLEGARFLVMDGIITQR
                     LIDAAYRAGIEYVVGHRMAELKKSPEITVRTFDQIGIGN"
BASE COUNT         1223 a          871 c          681 g         1420 t
ORIGIN      
        1 agaataagat gggtaataat tggagataat aactatggag aagggagcag tagagagcac
       61 gcagcaatga ctccgcgcta tcttggctgt tgtgccgtca ttgaaaagag atttgcaagg
      121 atacatgaga cgaatttgaa aaaacaagga atattagctc ttacattcgt ggaccctgca
      181 gactatgaca agatattaga ggatgacagg ctaagcatat tagaccttaa aaatttccaa
      241 gagggtaaat atcttagagg tattatacac cacagtaaca ctactaatga tgaattcatg
      301 ttaagccatt catacaactc atctcaaatt gaatggttca aagctggttc tgcacttaat
      361 ctaatgcgca ccaaataatt attgttacca aaatccttac tgacggttat ttgccttctt
      421 ccattttgtt atcaactcaa taaacaatct atgcattcta ttatcaccag ataactctgg
      481 atgaaaggaa gtcccaataa tgttttcttg ctgaacagct actatttttc cgtcaaattt
      541 gctcaaaatt tgaacccgtg agccagtgga aattacggta ggtgcgcgta taaaaattcc
      601 cttaaaatcg tttcctattc cggagatttc gagggtagac tcaaatgaat catactgcct
      661 tccaaatgaa ttcctctcta tttcaatatc caaagcacct aacaataatt gtttcttgtt
      721 tccgacaact ttatcataag acttttttgc caaaactatc atacctgcac atgttcccat
      781 aataggtatt ctattttgta gtactttggt taccgagtct aacagcccat tctttattga
      841 gagtaataga cccatcacag tactctcacc tccaggaata atcaatccat caactttcaa
      901 tatctcgtca gggtaacgaa ctgaaattac tttgcctttc aggttcatct cccttaatgc
      961 atcagttgtt gccttgatat tttcttctac atccccttga agagccaata ctccaatgag
     1021 taactcgtta ttcaaattgt aggtcctctc tcttgcatcc ttaaatctaa attctttgtg
     1081 tcaagaccaa gcattgattt tttctcatca atcatttttt gtgcctcaag gactgtcttc
     1141 ggatcgtcaa aataggtagt tgctataaca acggctttag ctctttcaag aggatcttct
     1201 gctttgaata ttcccgaacc tacaaaaatt ccatcacaac caagcttcat tagcagtgct
     1261 gcatctgctg gtgtagatat ccctccagca gcaaaattta caacaggaag tcttccaagc
     1321 cttcctgttt ctttaactat ctcaaaggaa gattgtatct ccctcgaaat cttgattagt
     1381 tcttgatcat cattattatc gtaaattccc tttaattttc tgatttcatt gtttaccatt
     1441 cgtatgtgag ttaccgcatg tgaaacatct cctgtaccgg gttcaccttt tgttcttatc
     1501 aaagcggcgc cttcctctat ccttcgtaga gcttctccta aattcttggc tccgttcaca
     1561 aaaggtgtcg tgtaattcca cttccaaata tgcctacttt catcagcagg actgagtact
     1621 tcgctctcat ctatcatgtc gacgcctgtc tcctcaagta tactggcttc cgaggaatgc
     1681 ccaattctgc atttagccat tacgggtatg ctcacagaat ctaatactgc ttgaattact
     1741 tttacgctag cagttctggc tactccacca gcatgtctta catcataagg gagtttatct
     1801 aaaaccatga ctgctactgc tcctgcatcc tcagctattt gagcctgctc tacattagtt
     1861 acatccatta ttacaccgtg tttttgcatg tgagcaaaac cacgctttat caaggcagtc
     1921 ccacttacaa tttgtttact atcaactgtt gaaatcttga tcccctttga taaaggatat
     1981 gcacctactt gtgatattgt catctactgt tttttttaat ttacattatt tagatattag
     2041 tcttgctcca aatcaagcgc agcgaaccta catttgactc taaaattttg cccttgcacc
     2101 ctcgtcaatc ctgaatttta tcgtattctg cgacttgatg atattccagg gcttaaagct
     2161 taacttgtcg acggatttgg tccaaagttt cttgtttaaa gaacaccata tattgagaat
     2221 agaactaaat agacattatt actttaataa tgttaaattt atgatagaac cttcggacaa
     2281 agctattctg acagccatct atgtctcttc acttgatcca gaaattttgc cattagaata
     2341 tctgaaagaa agaaccacaa tatcggatga aatgtttaag ctcaaaattg atgaaatgac
     2401 aaaaaatggc tttgtagaaa aatctgacac actcaaatta acttttcttg gtagagggtt
     2461 actaaaaatt gtcttgattg gaggcgtatt tgatattgtt catcctggtc atattcatac
     2521 tctaatggac gcaaagagcc agggtgacgt attggtagtg gtggtcgcaa gaagctcaac
     2581 tgcactcaag ataaacaaac agagaaaaat ataccatgat gaaattctta gaagagaatt
     2641 agtttcgtca attaggtgtg ttgattatgc gatcattgga agagaaggaa ctctatatga
     2701 tactgttgaa tttgtaaagc cagatattat tgccttagga tacgatcaaa tacatactga
     2761 aaaggagata gctgtcaatt gttcaaaaag gggaatagat acaagaataa ttcgcctaaa
     2821 tacgccaatt cccggatcta aaagcactca gatcaaagaa ggattgggtc attcaattta
     2881 tgacatatga ttctgtctta ttttttgagg tctgcagagt aaccttaaca tcatcaccgt
     2941 tctttagacg gagtacttgt ttgatattaa cgggagcaat aatttctaac atgttgttat
     3001 catgatgcgt tcgttcgagt attaacagat ctgattgaat gttttcgttt ccattaataa
     3061 tcgcagggta acatttaacc cacccgtagg ttcgttcaga atccttgaat ccatctataa
     3121 aatgaaaacg aaagctttca attttttctc tattttctat tgatagtgga tcatctattc
     3181 taatattcaa agtacccggg aaggggatat atccgatttt tttcttaaac tgcttgcgat
     3241 atccttcaag gctcatgtag tacttaccct cgcccatccc agagactaat gtaccattaa
     3301 aatgaacgtt tccgggtgat gaatctaatg ccatgtaaag gaactctgac atctttttaa
     3361 cggccgatag accttcttct gttactctga tcataaaacc atgtcctttc ttgacacgct
     3421 caacatattt catttcttgc aattctaaaa ttatttttga agctgcctgt tgtgacttgt
     3481 ttatttcgat tcctatgtca gtactggtaa attcaataaa attatccttt gctcccttaa
     3541 gtagtagttt agctagggta attacgtatt cagactttat atcttgcatc gttctttagt
     3601 tgccaatacc tatctgatca aaagtcctaa ctgtaatttc tggtgatttt ttcaattcgg
     3661 ccattctatg ccctactaca tactcaattc cagctctgta tgcagcatct attagtcgtt
     3721 gagtgataat tccgtccatc accaggaatc tagctccttc taaagaatcc aatcttttga
     3781 ttatttccga tactggtacc ttcaacaata cttgcataga attatccaag atcattgcct
     3841 ctaacgtctc attaatttgt ggatacactt ccttgactgc gctggttatt tgaggatcat
     3901 cttctaattt ttcaccatta ttgaaatttg aaggctcttg ataagccaaa ttattgttct
     3961 cataaatctt tgacttcttt acgcccttct gatgttgaat tgggacttca tattgttcta
     4021 ctgtaggttc aattacatcc ttaagtatct cggttatttc caatggagta cattcttcta
     4081 cttctttacc agtaggagct cttagaactt tgtcaatttt aaccagtcct tgtaattcct
     4141 ttaaaatcaa gtcagcagct ctatcaccat ctagaaatgc tataactttc tttcc
//
LOCUS       DASUMD010000097         2095 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1460784, whole genome shotgun sequence.
ACCESSION   DASUMD010000097 DASUMD010000000
VERSION     DASUMD010000097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2095)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2095)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2095
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1460784"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(51..905)
                     /locus_tag="VFX26_02755"
     CDS             complement(51..905)
                     /locus_tag="VFX26_02755"
                     /inference="COORDINATES: protein motif:HMM:NF001989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobyric acid synthase"
                     /protein_id="HEX5573428.1"
                     /translation="MKAKLLMIQGTTSGAGKSTLVIALCRIFSDMGFKVCPFKAQNMT
                     SNYHFLKEKKSLMRMARIQAVQAMAARTEPDIRMNPVLLKPLGSNLSEIILGGLKNLN
                     MTAEDYYNSFVLQKGFPKVLQDLESLRNENDLILIEGAGSPAEINLLKYDIANMILAE
                     QTNSKVLLVADIERGGCFAAIVGTIKLLPARQRKFVEGVIINKFLGQKSILNKAITSV
                     EEMTKKKVVGVIPKTEFNIPNEDSLDKKRSKPSYSKVYLDKQIDFVASTFRENTDLKY
                     LLNILKMK"
     gene            complement(902..1969)
                     /locus_tag="VFX26_02760"
     CDS             complement(902..1969)
                     /locus_tag="VFX26_02760"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HEX5573429.1"
                     /translation="MIQYSCSHGGVYTVSPRLVRVDFSSNINPIGISRNVLNVLRKNL
                     TKLSSIYPDNENTILKEKIIDYLDGKVSYESLNIGNGATELIYNFVRAFVRNQVVIPY
                     PTFCEYELASRKMGAKIKHVSLKEWKFDVDRILEKTKNSDAIFLCNPNNPTGLFSYDL
                     IEKLVKKIDGSIKILIDESFIEFVDERKHPRTFIEKINEFQNVVVLRSLTKSFGLAGL
                     RLGYCVSHPSIGKKISHNKITWNINGLAQMAGITALENLSHVRRARKIIKSEREFMYA
                     SINNNLSSFSAIKSDVNFYLIQLRNGRSKQIRDLLLEKNGILVRDCSNFRGMNDKYIR
                     VAVRTRSENLSLLNSLESIDK"
BASE COUNT          627 a          392 c          312 g          764 t
ORIGIN      
        1 agtgaaatgc caccggcaag cgataataaa ataaattcag tggtcatggt ttacttcatt
       61 tttagaatat ttagcagata tttcaagtca gtgttttccc taaaagtaga tgcgacgaag
      121 tcaatctgct tatcaagata taccttacta tacgagggct ttgatctctt tttatccaat
      181 gaatcttcat ttggtatatt aaattctgtt ttgggaatta caccaacgac tttctttttc
      241 gtcatttctt cgacagatgt aattgcctta tttagtatag atttctgtcc tagaaacttg
      301 ttaattatca caccttctac aaactttctt tgccgggctg gtaataattt tatcgttccg
      361 actatcgctg caaagcaacc gccccgttca atatctgcta ctaacaatac ctttgaattg
      421 gtctgttctg caagaatcat atttgcgata tcatatttta ataaattaat ttctgcggga
      481 gatcctgcac cttctatcaa gatcaaatca ttttcatttc taagactttc cagatcctga
      541 agaactttag gaaatccttt ttggagaacg aaactattgt agtaatcctc cgcagtcata
      601 ttcaaatttt tcaatccacc taaaatgatt tcgcttagat tactgcccaa gggtttcaga
      661 agaactgggt tcattctgat atctggttct gttctggcag ccatagcttg aacagcttgt
      721 attcttgcca ttctcattag tgattttttt tctttaagaa agtgatagtt ggaggtcata
      781 ttttgagcct taaaggggca taccttaaat cccatatcag agaatattct gcatagagct
      841 attaccaagg tactctttcc agctcctgat gtagtacctt gtatcatcag cagttttgct
      901 ttcatttatc aatggactcc aaagaattaa gtagcgataa attttcactg cgagtcctta
      961 ctgcgaccct gatatacttg tcattcattc ctctgaaatt gctacaatcg cgaacaagga
     1021 tcccattttt ttctaaaagt aaatctctga tttgtttcga acgaccattg cgcaactgga
     1081 taagatagaa atttacatct gatttaattg ctgaaaacga gcttagatta ttatttatac
     1141 tagcatacat aaattctcgt tcacttttta tgatttttct tgctcttcta acatgagata
     1201 aattttctaa tgcggtaatt cctgccatct gggctaatcc atttatattc caagttattt
     1261 tattgtgcga tatttttttt ccgatacttg gatgcgatac acaataaccc aatcttaatc
     1321 ctgcaaggcc aaatgatttt gttaacgaac gtaaaactac tacattttga aattcattaa
     1381 tcttttcgat aaaagtcctt ggatgttttc tctcatcaac aaactcaata aaactttcat
     1441 caatcagtat ctttatggac ccatctattt tttttactaa tttttctatt aaatcgtaag
     1501 aaaaaagtcc tgttggattg tttggattgc acaagaaaat cgcatcagaa ttcttggttt
     1561 tttccaatat tctatctaca tcaaatttcc attccttaag tgatacatgc ttaattttag
     1621 cacccatttt tcttgatgct aattcgtact cacagaatgt tggatatggt ataaccactt
     1681 gattccgaac aaatgctcgc acaaagttat aaattaattc agttgctccg ttacctatgt
     1741 ttaatgactc gtatgatacc ttgccatcca aatagtcgat aattttttct tttagaattg
     1801 tgttttcatt atctggataa atagacgata gctttgttaa attttttcta aggacattca
     1861 aaacattcct tgaaattcct attggattga tattggagct gaaatcaact cttactaacc
     1921 tcggacttac agtataaacc ccgccatgag aacaagaata ttgtatcatc taaattccat
     1981 atgaattcca atataacata aatggataat attatgtttt ttctgtaaac gaatattagt
     2041 tgcattttga ataacggcac ataatgttaa aagtagcagt aataggtgcg acagg
//
LOCUS       DASUMD010000098         2350 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_244662, whole genome shotgun sequence.
ACCESSION   DASUMD010000098 DASUMD010000000
VERSION     DASUMD010000098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2350)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2350)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2350
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_244662"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..197
                     /locus_tag="VFX26_02765"
     CDS             <1..197
                     /locus_tag="VFX26_02765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020144.1"
                     /note="eIF-5A; promotes the formation of the first peptide
                     bond; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="translation initiation factor IF-5A"
                     /protein_id="HEX5573430.1"
                     /translation="PLIDKRNGQIISISGQTFQVMDLETFEMFETSSVEHEIREKIVQ
                     GAEVEYWKVLERVKITRIKS"
     gene            complement(259..774)
                     /locus_tag="VFX26_02770"
     CDS             complement(259..774)
                     /locus_tag="VFX26_02770"
                     /inference="COORDINATES: protein motif:HMM:NF024258.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEX5573431.1"
                     /translation="MNLGIISDTHDDLPSVKNAIKVFNENRVSYVIHAGDYVFPGVVK
                     EFKHLGGKLIGVLGNNDGEKIGLLKNFQEIGGELHGEFCHLELDEFKIAIYHGTSSIL
                     TEAIIASQMYDLVIHGHTHKKRDEKIRDTLVLNPGCAHREFPNIEGNIETEPSVIIFD
                     TTKIDYQFVKL"
     gene            complement(859..1515)
                     /locus_tag="VFX26_02775"
     CDS             complement(859..1515)
                     /locus_tag="VFX26_02775"
                     /inference="COORDINATES: protein motif:HMM:NF020893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEX5573432.1"
                     /translation="MSITFEILKPIIDFVISFISTLGYPGIFLLSILESALIPIPSEI
                     IMPFSGFLVSNGTFEPVSVVLAGTFGNLVGSILTYYLGIKAGRAFILRYGKYILFKKS
                     HLEFTEELFQKYGDKISFFCRLLPAVRTYISLPCGVGKTNFVKFSIYTFLGSLIWNSM
                     LTYVGIIFGHNWENIDKYAIYLDVVSVCVITGFVIWFFAKIRKRSKTNQKREVPQSDK
                     "
     gene            complement(1586..1660)
                     /locus_tag="VFX26_02780"
     tRNA            complement(1586..1660)
                     /locus_tag="VFX26_02780"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1623..1625),aa:Met,seq:cat)
     gene            1843..2121
                     /locus_tag="VFX26_02785"
     CDS             1843..2121
                     /locus_tag="VFX26_02785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573433.1"
                     /translation="MKDAIKRGIVKTVANGVIISRDGRGYSKDELVQSGVTDIRIARK
                     KKIPIDPFRKTAHNENIEQLKAYLSKEISKTTGKVKQKRIRKSSKSLN"
BASE COUNT          799 a          421 c          387 g          743 t
ORIGIN      
        1 ttccactaat agacaagaga aatggtcaaa tcatttccat ttccggacaa acatttcaag
       61 taatggatct agaaacattc gaaatgtttg aaacttcgtc agtagaacat gaaatacgag
      121 aaaaaattgt gcaaggagca gaggttgaat attggaaagt tctcgaaaga gtaaaaataa
      181 ctagaataaa aagctagtcc tgtctaaagt caaattattg aaataagaaa ttactttcta
      241 gagtatcatc cgatttaact ataatttgac aaattgatag tcaatctttg tagtatcaaa
      301 tattatgact gatggttctg tttcaatatt tccttctata ttgggaaact ctctgtgtgc
      361 acaaccaggg tttagcacca gtgtatctct tattttttca tctcgtttct tatgagtgtg
      421 tccatgaata accaaatcgt acatttgact tgcgataata gcttcagtca atatactact
      481 ggttccatga tatatggcaa ttttgaattc atctaattca aggtgacaaa attctccatg
      541 cagctctcca ccaatttctt gaaaattttt cagcaatcct attttttctc catcattgtt
      601 tccaagtact cctattaatt tcccgcccaa gtgtttgaat tcctttacta ctccggggaa
      661 aacatagtct ccagcatgaa ttacataact gactctattt tcattaaata cctttatcgc
      721 attttttaca cttgggaggt catcatgcgt atcggatatt atgcctaaat tcattaataa
      781 tgtagattga taattaaata ttgcaaataa acgaatctat tgagagtaat gaagttttca
      841 ccactgcact tagttttctt atttatcact ttgcggaact tcccttttct gattagtctt
      901 ggatcgcttt cgaatcttgg caaaaaacca gatgacgaaa cctgttataa cacagacaga
      961 caccacatca agatatattg cgtatttgtc aatattttcc caattatgtc cgaatatgat
     1021 accaacgtaa gttaacattg aattccagat gagtgaccct agaaatgtgt agattgagaa
     1081 tttaacaaaa tttgttttac ctacaccgca cggaagagat atatatgttc gtactgcagg
     1141 taacaatcta caaaagaatg aaattttatc accatatttc tggaacaact cttcggtaaa
     1201 ttcaagatga cttttcttaa acaaaatgta ctttccatat cttaatatga atgcccttcc
     1261 cgcctttatt cctaagtaat atgttaggat tgagccgaca agatttccaa aagtaccagc
     1321 aagtacaaca cttacaggct caaacgtccc attgctaacc agaaaacctg aaaatggcat
     1381 aatgatttcg cttggtatgg gaatcagcgc actttctaaa atgcttaaca aaaaaattcc
     1441 tgggtagcct aaagtagata tgaatgaaat gacgaaatct ataattggtt ttagaatttc
     1501 aaacgtgatt gacaattaat agttagaaaa ttaatggcat aaatatctct ttattttttc
     1561 gtggaatttt ggtttcagga ttacgtgccg gaggcgggac ttgagcccgc ggcctttcga
     1621 ttatgagtcg aacgctctga ccaagctgag ctaccccggc gctcagcccc ttgaccagaa
     1681 tgattttttg aaacataata tattttattc aaagtattga ctatcattta ataccgattg
     1741 tttttctcga tatctcgtta atcgtaaaaa tgaatcaatt tgatactaaa tgggcacttt
     1801 atcaagaaac cttttaattt agatctctaa tttttgtagc ttatgaagga tgctatcaag
     1861 cgtggaatcg taaagacagt agccaatgga gtcatcattt cacgagatgg aagaggatat
     1921 tctaaggatg aactagtaca atcaggagta acagatattc gcattgcacg taaaaagaaa
     1981 atcccaattg atccatttcg aaaaacagcc cataacgaaa atattgagca actcaaggct
     2041 tacttaagta aggagatttc gaagacaact ggcaaggtaa aacaaaaaag aatcagaaaa
     2101 agctcaaaga gccttaactg aaattaccaa agctagatta cgcattttat atccatttac
     2161 gagtcaaaat tgatttgacc aattgtggat atatataaat atatcctctc aataatatat
     2221 tcatgactgg tgccctagtt tccgaaagca tttcatcgct cctttcgtgg cccgttggaa
     2281 atttaatgaa taatgatgca attatacttg aagcagatga aactctagat gaagcaataa
     2341 aaaggatgaa
//
LOCUS       DASUMD010000099         3682 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_796932, whole genome shotgun sequence.
ACCESSION   DASUMD010000099 DASUMD010000000
VERSION     DASUMD010000099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3682)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3682)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3682
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_796932"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..419)
                     /locus_tag="VFX26_02790"
     CDS             complement(<1..419)
                     /locus_tag="VFX26_02790"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX5573434.1"
                     /translation="MKVKKTVLVTGCSSGIGFATCLVLSRNDFMTYGTVRNLSKAKRI
                     QEVINREKLPLKIIQLDVNDNQSIKLAVKKILTESGGIDILINNAGYGMFGPIEDITM
                     EEVKKQFETNFFGTIRLIKSIVPIMRKQGNGIIVNISS"
     gene            534..1211
                     /locus_tag="VFX26_02795"
     CDS             534..1211
                     /locus_tag="VFX26_02795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEX5573435.1"
                     /translation="MQLIPKLEIKSLSSMITFLNEEKVGRVASIDVQGYPQIIPMNFV
                     YVKNDSVDTQTGNTNIGAIYMHSHPFGEKIENIKRNSKVGFEVDSYVCFLPSYYFHPT
                     DASQADTLYVSVVIKGNASSVQDSVEKARALNALMKKYQKEGGYESLVSNMGSVREVT
                     VLKIVPDQIRGKYKIGQHWIPKYRLKMARNIVEREGEDNAKKILKIMGIDIMDNGELR
                     VTKEPIM"
     gene            1489..2019
                     /locus_tag="VFX26_02800"
     CDS             1489..2019
                     /locus_tag="VFX26_02800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription factor"
                     /protein_id="HEX5573436.1"
                     /translation="MHSVENEDPFVKIANLIGGEEYHKVARALLNTEDATDEEIAGAT
                     GMRINIIRKVLYDMFGKALITGIRVKDEKKGWFVYRWRAKRDQAENFIENQKKKILDR
                     LQKRLEYEESSEFYHCGNTNCPRIKFDYAMELFFKCPNCKNSLNMVNNEKVKDALRYK
                     IEQILLDISSKDEISS"
     gene            complement(2011..2664)
                     /locus_tag="VFX26_02805"
     CDS             complement(2011..2664)
                     /locus_tag="VFX26_02805"
                     /EC_number="1.1.1.302"
                     /inference="COORDINATES: protein motif:HMM:TIGR00227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone
                     5'-phosphate reductase"
                     /protein_id="HEX5573437.1"
                     /translation="MLYVILNAAMSIDGKISSRSNDSSFSSKMDLVRVHKLRASVDGI
                     VIGISTVLEDNPMLNVRYFSTGTKNPARIIIDSKARIPLDSRIIRSSKKIQTIIAATH
                     NASSKKIKELEKVGAQVLFSGKGKVNIRNLFQVLERLDFKKILVEGGGEINWSVLKLG
                     LADELIVTISPVVIGGRDAKTLVEGEGIANITNGIKMKLSKTVIQNKNEIVLYYKLR"
     gene            complement(2652..>3682)
                     /locus_tag="VFX26_02810"
     CDS             complement(2652..>3682)
                     /locus_tag="VFX26_02810"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX5573438.1"
                     /translation="KDIGVDSTFDSRIHPIHGIKNKILQKSERKHLINFMRSSVISMM
                     RKGIVVFADFREGGLQGIKQITEATSGLSIKCIRLGRPEYYYDVSQDFYQNPKFPPDV
                     IELIYNILNIADGLGISGANENTDNSLKEYRTISQKESLKKKFLLGIHASESLQTEKK
                     SITTTGKSEVQRIVDNLLPNFIVHLTNASDVDIKLVARKKIGVVVCPRANGTLGVGIP
                     KIAKMLSFGCCIAIGTDNIMVNSPDMFRELDYVWKLSRTLEGGPISAREILKMATVNG
                     GKILGINSGSLMTGMSADMIFIDKTNLDISPMHDPHVSIVHRANANTILNVMINGKFV
                     DGDEFCCM"
BASE COUNT         1185 a          630 c          617 g         1250 t
ORIGIN      
        1 gaactaatat ttacaataat tccatttcct tgcttcctca ttattggaac tattgacttt
       61 atgagtcgga ttgttccgaa aaaattggtc tcaaattgtt tcttaacctc ttccattgta
      121 atatcttcaa tgggaccaaa cattccgtaa cccgcattgt ttattaaaat atcgatccct
      181 cctgattcag taagaatctt tttgacagct agtttgatag attgattgtc atttacgtca
      241 agttgtatta ttttaagtgg tagcttttct ctatttatta cctcctgaat tctcttagcc
      301 tttgacaaat ttcttaccgt gccatacgtc ataaagtcgt tacgggataa aacaagacaa
      361 gtggcaaatc ctattccaga agaacatcca gttaccaaaa ctgttttttt aactttcata
      421 attagagtta tgggtcataa ttaaaaaatt ttcggaataa gttagttcaa ttagcagaag
      481 aaaaatctta aaatttagta atttaattat accactgtag accagatcta gatatgcagc
      541 taataccaaa gctggaaata aaatctttat ccagtatgat tacctttcta aatgaagaaa
      601 aagttggtag agttgcatca attgatgtac agggttatcc gcagataata ccaatgaatt
      661 ttgtttatgt gaagaatgat tcagttgata ctcaaacggg taatactaat attggcgcga
      721 tatatatgca ctctcatccg tttggagaaa aaattgaaaa tatcaaaaga aattcaaagg
      781 ttggctttga ggttgattcc tatgtatgtt tcttgccatc atattatttt catcccaccg
      841 atgcatcaca ggcagataca ttgtatgtta gcgtcgttat caagggaaat gcatctagtg
      901 tgcaagattc tgttgaaaag gcaagggcat taaacgcttt gatgaaaaaa tatcaaaagg
      961 agggaggtta tgagtcgctc gtctccaata tgggatcagt tagggaagtg acagttctga
     1021 aaattgtgcc agatcaaatt cgtggcaagt acaagatagg acagcattgg ataccaaaat
     1081 acaggttaaa gatggcgaga aatattgttg agagggaagg cgaagacaac gctaaaaaaa
     1141 tactgaaaat aatgggtatt gatataatgg ataatggtga gcttagagtg actaaggaac
     1201 ccatcatgta atcatctaat caaaatattt tatattttgc tattaaaatt aaattactaa
     1261 tattaaactg ttatttaaaa ttgaaataaa tttaagtttt tcaacaatct gcaaatttta
     1321 tatattatgt aatatctttt tccattttta tcgaatatcg ctatcctatg aaacctagta
     1381 aaagagccca aatttttaaa tacaattcac atctgtcttc ataaaaatat gaaatagttt
     1441 cgaaattgac ggtaaatata taactaaaaa agacgcatga ttacttggat gcattcagtt
     1501 gaaaatgagg atccatttgt caagatagct aacctaattg gtggagaaga gtatcataaa
     1561 gttgcaagag cattgttgaa tactgaagat gctactgacg aggagatagc gggtgctact
     1621 ggtatgcgga tcaatataat aagaaaggtg ttgtacgata tgtttggtaa agcattaatc
     1681 actggtatca gagttaagga cgaaaaaaaa ggttggtttg tatatcgatg gagagccaag
     1741 agagatcagg cagaaaattt tatcgagaat cagaaaaaaa agatcttgga tcgactacag
     1801 aaacgactgg aatatgaaga atcgtccgaa ttttaccatt gtggaaatac aaattgtcca
     1861 agaataaaat ttgattacgc aatggaacta ttctttaagt gcccgaattg caaaaattca
     1921 cttaacatgg taaataacga aaaggttaag gatgctctaa ggtacaaaat agagcagatt
     1981 ttgttggaca ttagttcaaa agatgaaatt tcatcgtaat ttatagtaca atacaatttc
     2041 atttttattt tgtattactg tttttgataa tttcatttta ataccattag tgatatttgc
     2101 aatcccctca ccttctacca atgtttttgc atctcttcca ccaataacta ctggtgatat
     2161 tgtaacgatt aattcgtcgg caagtcccaa tttcagcaca gaccagttta tttctccccc
     2221 tccctcaaca agtatttttt tgaagtccag cctttctaat acttgaaata ggtttctgat
     2281 gtttaccttt ccttttccag agaataatac ttgtgcacct actttctcca actctttaat
     2341 tttcttcgat gatgcattat gtgttgcggc aatgatagtt tgaattttct ttgatgatct
     2401 aatgatcctt gaatctaatg gaattcttgc ttttgaatca attattattc ttgcagggtt
     2461 ctttgtccct gtggagaaat acctcacatt caacatggga ttgtcttcca gcactgtaga
     2521 tattcctatc acgataccat cgactgatgc tcttaactta tgaacacgta ccaagtccat
     2581 tttagacgaa aatgatgaat cgttacttcg agaggatatc ttaccgtcta ttgacatagc
     2641 tgcattcaag attacataca acaaaattca tctccatcta caaatttacc atttatcata
     2701 acattgagga tcgtgtttgc atttgctcta tgaactatcg agacatgagg atcatgcatc
     2761 ggtgaaatat ccaaattggt cttgtcaata aatatcatat ctgcagacat accagtcatt
     2821 aaagatccag aattgatgcc aagaatttta cccccattga cagtagccat tttcaagatc
     2881 tcccttgcag aaattggtcc accttccaaa gtcctgctta gtttccaaac ataatctaat
     2941 tcccgaaaca tgtctgggga attaaccata atgttgtccg tgccaatagc aatacaacat
     3001 ccaaagctta gcatcttggc aatttttggt attcctactc ccaatgtgcc atttgctctt
     3061 gggcaaacga caactccgat ttttttacgt gcaacaagtt tgatatcgac atcagatgca
     3121 tttgttaaat gaacaataaa gtttggtaat aggttatcaa ctattctttg tacttcgctt
     3181 ttccctgttg tagtaattga ttttttttct gtttggagtg attctgaagc atgaattcct
     3241 aacaagaatt ttttctttaa ggattctttc tgactgattg ttctatattc ctttaatgaa
     3301 ttgtcagtat tctcatttgc tccgctgata cctaatccgt cagcgatatt taggatgtta
     3361 tatatcaatt ctattacatc tggcggaaat tttggattct gataaaaatc ttgagataca
     3421 tcgtagtaat attccggtct acctaatctg atgcatttta ttgatagtcc tgacgttgct
     3481 tctgtaattt gttttatccc ttgtaatccc ccttctctga aatctgcaaa tacgactatg
     3541 ccctttctca tcatagatat tacagagctt ctcataaaat taattagatg ttttctctcg
     3601 ctcttttgca agattttatt tttgataccg tgaattggat gaattctaga atcaaaagtt
     3661 gaatcaacac caatatcctt ac
//
LOCUS       DASUMD010000100         4618 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1018734, whole genome shotgun sequence.
ACCESSION   DASUMD010000100 DASUMD010000000
VERSION     DASUMD010000100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4618)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4618)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4618
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1018734"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..550
                     /locus_tag="VFX26_02815"
     CDS             <1..550
                     /locus_tag="VFX26_02815"
                     /EC_number="3.2.2.20"
                     /inference="COORDINATES: protein motif:HMM:NF015319.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008725 - DNA-3-methyladenine glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HEX5573439.1"
                     /translation="WAKEQIEIDYHDNEWGVPLHNDRKLFEFLVLEAMQAGLSWRIIL
                     NKRQEFRKAFDNFQVEKIANYDIVKINELCSNSLIIRNKKKIEATILNANAFVRIQKE
                     FGSFDTYIWNFVSYKPIQNSWKTYKDVPSTSQESDLICKDLRNRGFRFVGSKICYSMM
                     QAIGMVNDHTISCFRYIELRKK"
     gene            660..1385
                     /locus_tag="VFX26_02820"
     CDS             660..1385
                     /locus_tag="VFX26_02820"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012345.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase"
                     /protein_id="HEX5573440.1"
                     /translation="MKDVILSIQNTEIETLGNFKELFESDGYRIETINVKKDKIPQEP
                     DKYAGIVILGGYMSVYETLPYLNEEQDLIRNANRLQVPLLGICLGSQLIAQALGGKVH
                     KGERKEIGWFDVAINDEGKNDIFKGIANENIKVFQWHGDIFKLPNSAILLASSNLYPQ
                     AFRLGNSIGILFHLEVTSQMIHDWIQNYGHEMNEVGISADVILDVKNSEFESLANSCK
                     VVYANFSKMIAAYRGGKRNSVMN"
     gene            1654..3210
                     /locus_tag="VFX26_02825"
     CDS             1654..3210
                     /locus_tag="VFX26_02825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573441.1"
                     /translation="MIIDDNNQITKDEIGYHIAPIKPLHWWYEYYKRIRLFPWWTRYN
                     IGLTKEASHKDKILELVAKMDFDKKATSKIIRHAVSEFSKHGLGSDYPGYHTINHNLE
                     VAYISLLSAGNQKLENKMSNKDIKNLFVAALFHDFDPRKEFEKPNEDNIELFIRNDQK
                     LAKLIHSFDIDLNIVIALIHRTTYPFAGTQKEHALKRMHELYSLAGIHKDDTSTRQHY
                     EKLGLYLSICDRIAGYCLGDFNYAKELARRNARGIGWHSQVINVKSVEYFAALKQKDD
                     KDTAERVIQSLPDVCRKNFFDNVEGFREAWEKELEIKASLRKNELNLVTSVENIMDVK
                     NKMSEDLCDTIMRIRYEYCSPTNFNDKEFRKSLCDPNTILITLRINSKVGEIVGYVKG
                     GPLEKHKPKHGMYDENLGKMDSIHMESLRRGTNDENLGKMNSVFMEWIAIKTGYLGEK
                     GGHMLRSEFLKEARRRGYTYVTSYYQRELIIHRKNKGEPIEIVQQYDAAMIDYYRIDL
                     SQLVESISLN"
     gene            3551..4165
                     /locus_tag="VFX26_02830"
     CDS             3551..4165
                     /locus_tag="VFX26_02830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEX5573442.1"
                     /translation="MSFPSDIFARMFTDKNTQLLYPKEEVPSHDVADIVQTNIFNVML
                     NRRSQRKFENRDVEEWKLEMIFAAADTAPTAGGFQGFEIYHIKNQEIKNKLVEAANNQ
                     PYVNAPVVLVFCMNPKRIKLNFPPETIRKFSQQDATLAAAYSQLAAHALGLSSIWIGM
                     LDENKIREVLSTDLSPSSILCTGYPVKMLVPKPKRNLKDLIHEI"
     gene            complement(4339..>4618)
                     /locus_tag="VFX26_02835"
     CDS             complement(4339..>4618)
                     /locus_tag="VFX26_02835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573443.1"
                     /translation="NFMPIAKYRIHEIEDATRQLGDKLKDNTLRLDFLSYIEAFLNLS
                     ETVVLDGKPQNDNDLESFIISINLQLKRIQEFLTRFRNEIEQEDDNAK"
BASE COUNT         1633 a          677 c          880 g         1428 t
ORIGIN      
        1 ttgggccaaa gagcagattg agatagacta tcatgacaat gagtggggag ttccgctaca
       61 caatgatagg aaattatttg aatttctagt acttgaggca atgcaggcag gtctaagttg
      121 gcgcattatt ctcaataagc gtcaagagtt tcgaaaggca tttgataatt tccaagtgga
      181 aaaaatcgct aattatgata ttgtgaaaat taatgaactt tgttcaaact cacttattat
      241 tagaaataaa aaaaagatag aggcgacaat tcttaatgct aatgcatttg ttaggatcca
      301 aaaagaattt ggcagttttg atacctatat atggaacttt gtaagctaca aacctataca
      361 aaattcatgg aagacctaca aagatgttcc ttctacgtcg caagaatctg atctgatttg
      421 taaagatctt agaaatagag gattcagatt tgttggatcg aagatttgtt attcaatgat
      481 gcaagcaata ggaatggtta atgatcacac aataagttgt tttagatata tagaattaag
      541 aaaaaaatag attttttctt gacataatgt gtatttaatc ctagcgtaca accccacaaa
      601 ttgaattttg ggttattcct gaataagtag atataatgaa ttaatttaac attatgtaat
      661 tgaaagacgt catcctctct atccaaaata cagagattga gacactgggc aatttcaagg
      721 aattgtttga atcagacggg tataggatcg agactataaa cgttaaaaaa gacaaaattc
      781 cccaagaacc tgataaatat gcaggaatag tcattttggg aggatatatg tctgtatatg
      841 aaaccttacc gtatctgaat gaagagcaag atttgataag aaatgccaat cgtcttcaag
      901 ttcctctact tggaatctgt ctaggctcgc aattaattgc ccaagcatta ggtggtaaag
      961 tgcataaagg tgagcggaaa gagattggat ggttcgacgt agcaataaat gatgaaggaa
     1021 agaatgatat attcaaaggg atagctaatg agaacataaa agtcttccaa tggcatggag
     1081 atatctttaa actaccaaat tcagcgatac ttttggcctc ctccaatttg tatccacaag
     1141 catttagact tggtaactcc attggaattt tgtttcatct tgaagtaacg tcccaaatga
     1201 ttcatgattg gatacaaaat tatggacatg agatgaatga agttggtata agcgcagatg
     1261 ttattttaga tgtcaaaaat tctgaatttg aaagtctggc caatagctgt aaggttgtgt
     1321 acgcaaattt ctccaaaatg atagctgcct atagaggtgg aaaaaggaat tctgtgatga
     1381 attgatacga tcatcaaaat gctgtccaaa aagttgtaga atgaatctct atcagagatg
     1441 aagtagataa gtgaacagca tatcaagtgt ggacaattat ctgacccctt aaaacaaaag
     1501 tatgaacccg tggaagtaaa aaatacatca taaatcaaaa atttctataa tttatcatca
     1561 ttaatatgtt atttgttata tttctaatgt ccgataagct tccataataa gttttttata
     1621 ttcagtcgta ttctctattg gaggtgccat ttaatgataa ttgatgataa taatcaaatc
     1681 acgaaagatg aaattggata tcatattgct cctatcaagc cgttacattg gtggtatgag
     1741 tattataaaa gaattagatt atttccctgg tggactcgat ataatatcgg tctaacaaaa
     1801 gaggcatctc ataaggataa gatattggaa ttagttgcaa aaatggattt tgataaaaag
     1861 gcaacatcaa aaatcataag gcatgcagta tccgaatttt ctaaacacgg attaggatcg
     1921 gattatcctg gctatcacac tatcaatcat aatcttgaag tagcgtatat ttcattattg
     1981 tcggcaggaa accaaaaatt agaaaataaa atgagtaata aagacatcaa aaatcttttt
     2041 gtggctgcac tttttcatga ttttgatcca agaaaggaat ttgaaaaacc gaatgaggat
     2101 aatattgagc tgtttattag aaacgatcaa aaactagcta aacttattca ctcttttgat
     2161 attgatctga atatagtgat tgcgttaata catagaacaa catatccatt tgctggaaca
     2221 caaaaggaac atgcgctaaa aagaatgcat gaattatatt ccttggcagg tatccataaa
     2281 gatgatacta gtacaaggca gcattatgaa aagctcgggt tgtacttatc tatctgtgac
     2341 cgcatcgcag gatattgttt gggtgatttt aattatgcta aggagcttgc aagacgcaat
     2401 gctcgaggca ttggatggca ttcgcaagtc attaatgtaa aatctgttga atactttgct
     2461 gcacttaaac aaaaagatga taaagacacc gctgagagag taatacagag tttaccagat
     2521 gtgtgcagaa aaaatttttt tgataatgtt gaaggtttta gagaggcttg ggaaaaagaa
     2581 ctcgagataa aggcgtcatt acgcaagaat gaactcaatt tggtaacatc tgtagaaaat
     2641 attatggatg tgaaaaataa aatgagtgag gatttgtgtg acacgattat gagaatacgt
     2701 tatgaatatt gttccccaac aaattttaat gataaagaat ttcgaaaatc actttgtgat
     2761 ccaaatacta ttctgatcac gcttagaatc aatagtaagg tcggagaaat agttgggtat
     2821 gtaaaaggag gcccgttgga aaaacacaag cctaaacatg gcatgtacga tgaaaatttg
     2881 ggtaaaatgg atagtataca tatggagtcc ctcagacgag gtactaacga tgaaaatttg
     2941 ggtaaaatga attcagtttt tatggaatgg attgctatta aaactgggta cctgggagaa
     3001 aaaggaggtc atatgctcag atccgaattt ctaaaggagg ctagaaggcg tgggtacaca
     3061 tatgttacaa gctactatca aagggaactt attattcata gaaagaacaa aggagaacca
     3121 attgagatag ttcaacagta tgatgcagct atgattgatt actatagaat tgacttgtcc
     3181 caattagttg aatcaatttc attaaattag gctggcagaa tatttaggtt gatatatcaa
     3241 ggatatataa gagtaaaaaa tgaacttttg tgaattcatt tgtaatatca attatacttt
     3301 cttgtatggt ctaagttata gattgaatgt tagaagcctt gttgtgcata gttcttgatg
     3361 tatcaccttt ttctatcgtt aattttttcc taaccatttt tgaccatttg gtggtaatca
     3421 atggatagtt tatgaacatt taatcaagga ctaattcggt ttcgctggca gaatcgacaa
     3481 tcgttctgta tcagagatta ctgtactctg aactgatcca gtttaataac ttggatgata
     3541 ttacaagtat gtgtcttttc cgagtgatat ttttgcaaga atgtttactg ataagaatac
     3601 acaactgcta tatcctaaag aagaggttcc aagccacgat gtagcagaca ttgtacagac
     3661 gaacatcttc aatgttatgc tgaatagaag atcacagaga aaattcgaaa atagagatgt
     3721 tgaagaatgg aaacttgaaa tgatttttgc agctgcggat acagcgccaa ctgcaggagg
     3781 attccaaggt tttgagatat atcacataaa gaatcaagaa attaagaata agctcgttga
     3841 agctgccaat aatcaaccat atgtaaatgc acctgtagtg cttgtatttt gtatgaaccc
     3901 caagaggata aaattaaatt ttcctccaga gactatcaga aaattttctc aacaggatgc
     3961 cactcttgca gctgcttatt cccaattggc tgcacatgct ttgggattga gctctatatg
     4021 gataggaatg ttggatgaaa ataagataag ggaagtacta agtacagatc tttctccatc
     4081 atcaattcta tgtacgggat atccagtaaa gatgcttgta ccaaaaccaa agaggaatct
     4141 caaggatcta attcatgaaa tctaattccg tcattacatc taaaatttac taatttccat
     4201 tcttaaatat aagaacgtga atagaaataa atctttacta taatcttccg aatcaaaacc
     4261 tcgaatgtta tctattataa gtaaatccac cagcatgaac aatctagtac aaaatgagga
     4321 ttgaatttca tgacatagtt attttgcatt atcatcctct tgttctatct cgttgcgaaa
     4381 tctagtcagg aattcttgaa ttctttttaa ttgaagattt atagaaatta taaaactttc
     4441 aagatcgtta tcgttttgtg gtttaccatc taatacgaca gtttcactaa gattcaagaa
     4501 tgcttcaatg tacgacaaaa aatctaatct cagggtattg tctttaagtt tatctcctag
     4561 ttgcctcgta gcatcctcta tctcatgaat tctgtatttg gcgataggca tgaaattt
//
LOCUS       DASUMD010000101         3579 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_908001, whole genome shotgun sequence.
ACCESSION   DASUMD010000101 DASUMD010000000
VERSION     DASUMD010000101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3579)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3579)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3579
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_908001"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(59..523)
                     /locus_tag="VFX26_02840"
     CDS             complement(59..523)
                     /locus_tag="VFX26_02840"
                     /inference="COORDINATES: protein motif:HMM:NF024864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupredoxin domain-containing protein"
                     /protein_id="HEX5573444.1"
                     /translation="MASLFVSGIFSVLSTEVLANQITDQTNLIIHPVTMVENSSNATS
                     KASSNNTIILAAAEVGDETYRWVNDTGAENPNLNMKSNTEYTIKIDNPTDEKHELIID
                     SESNGNTSAIAESEEIEPEGNVEFKFKADQVGELGYHCEYHPDQMKGTITVS"
     gene            717..1607
                     /locus_tag="VFX26_02845"
     CDS             717..1607
                     /locus_tag="VFX26_02845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573445.1"
                     /translation="MKQYKIRTGYFLILSLAIMFVASQGTSSSYIYKSWADEPLILDN
                     IIKNYYVKIQDKSENGLVTSSEIGQDSKAGNETGSDLDDQALSGLEDTDGGNDTSTEA
                     STESESNQNTNQTIVTQQQQQTQNNQTVNIQNNIEMKQKLEIAISEEEGEAPISIEEQ
                     NRIESIDRDIVTQHKALTGPDCKSGNVLAGASNAEDLRVLTECQDAIGTVMHTKKMDD
                     GDYKFFLNLDEQFKFLVNDKNNEKTDGFLVVEIVPPDQNLQGVYLPKDGDRVHVWGAW
                     VTDKPKGWHEIHPTWKVVNQ"
     gene            complement(1807..1880)
                     /locus_tag="VFX26_02850"
     tRNA            complement(1807..1880)
                     /locus_tag="VFX26_02850"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1844..1846),aa:Pro,seq:cgg)
     gene            complement(1967..3280)
                     /locus_tag="VFX26_02855"
     CDS             complement(1967..3280)
                     /locus_tag="VFX26_02855"
                     /inference="COORDINATES: protein motif:HMM:NF013434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX5573446.1"
                     /translation="MVVGNSLQDSYDVTVIGGGILGCAIAYFLSVMTDSTIVVMEQEK
                     KVALHTSSRNTGKVHAPFYYNPEKKSSTATYALKGFDMLKRYCTVHNLPFKEDGVVEV
                     ATNDREIDILHEHVQWALKNGLRNEDVKFLSKDEMLQIEPNVKCESGFICFRDASTDY
                     GLINQRLMEDAIKFGCKTSFENKFRSIYINTSAEANRKMTIIGTVKNITTDYVINAAG
                     GNSLDIAHSIDLAKEYTDLHFRGEYWIAPQKYGNLTRRSIYMVPRYTEYPFLDPHWII
                     RSDGRCEVGPNAVPVFGPYSYTLYDNLKNAVPKLFGSCKVGVLKLLLSKQFLYLVANE
                     FSSSFSKTNMINRVRRFLPSLNPSDFKQRGMAGVRSLLIDKNGDFASESLLVEGDSSL
                     HILNYNSPGATGALPVAANIVRKLIERSLVDGTSRQINFPFTDEL"
     gene            complement(3347..>3579)
                     /locus_tag="VFX26_02860"
     CDS             complement(3347..>3579)
                     /locus_tag="VFX26_02860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573447.1"
                     /translation="LDYTMFEQTGNLFVGYDLVNERKQELGMMEIIETTILTIDEIKK
                     LLFNGKILNASSIVAFYKSLDFHINYRNKKMK"
BASE COUNT         1159 a          654 c          620 g         1146 t
ORIGIN      
        1 aacctaaggg cttggtattt gtaagggttt taataaaaaa gaaaaaggtt aagtataatt
       61 aggacacggt aatggttcct ttcatctgat ctggatgata ctcacaatga taacctagtt
      121 cgcccacttg atctgctttg aatttgaatt caacgtttcc ctctggttct atttcttcgc
      181 tttccgcaat tgcagatgta tttccattag attcagaatc aattattaat tcatgttttt
      241 catcagtggg attgtcaatc tttatagtat actcggtatt tgatttcata ttcaagttag
      301 gattttccgc tccagtatca tttacccacc tataagtctc atcacccact tcggcagcag
      361 caagaattat agtgttgttg ctcgaagcct tactcgttgc attagagctg ttttctacca
      421 ttgtcacagg atgaattata agattggttt gatcagttat ttgatttgct aaaacttcag
      481 tggataacac cgagaatatg ccgctaacaa acaatgatgc cataataaag atgcctgttt
      541 gatataccat agttcgtagg tgaagaagta taagataagg gtttccgtct atatagtgag
      601 tcttctaatc gtttcctttc gaaataataa gacaaagtat actctcaacg aacagggttt
      661 cacgagaaag tagtgcttta taatgtttgt tggcatattg caaattgata gactgattga
      721 aacaatacaa aatcaggaca ggatattttt taatattaag tctagctatc atgtttgtag
      781 catcgcaagg aacctcgagc agttatatct ataaatcatg ggcggacgag cctctaattt
      841 tagacaatat aataaagaat tattatgtaa aaatccaaga taaatcggag aatggtctag
      901 ttacatcttc tgaaattggt caggattcaa aagctggtaa tgagacgggc agtgatttgg
      961 atgatcaagc gttgagtggt ctggaggata ctgatggtgg taatgatacc tcaacagagg
     1021 caagcaccga aagtgaatct aatcaaaata ctaaccaaac catagtaact caacagcaac
     1081 agcaaactca aaataatcag acagttaaca tccaaaataa cattgagatg aaacagaaat
     1141 tggagattgc tatctcagaa gaagaaggag aagcacctat ctccatagaa gagcagaata
     1201 gaattgaatc gatagatcgt gatatagtaa cacagcacaa agcacttaca ggacctgatt
     1261 gtaagtcggg aaatgttctt gctggtgctt caaatgccga agacttgagg gttttgactg
     1321 aatgtcagga tgcgattggt acggtaatgc atactaaaaa aatggatgat ggggattaca
     1381 aatttttctt gaatttagac gaacaattta agttcctagt aaatgataag aacaatgaga
     1441 aaacagatgg gttcctagtc gtagaaatag tacctccaga tcaaaactta caaggagtat
     1501 atcttccaaa ggatggcgat cgtgttcatg tgtggggagc atgggtgaca gataaaccaa
     1561 aagggtggca tgagatacat cctacttgga aagttgtcaa ccaatagtat tgataattag
     1621 ttcacacaat tttcagcaaa gaaatcgcag gtgccactgt gctgcagata actgaggaaa
     1681 tcaaggtcat ggatgcttac tgaggtccac atcatgaaat gattgatatt acattattac
     1741 acatttctaa acacagtatg acatcctaat agaccaattt tacaaaatat tgtgttaaat
     1801 ttgacatggg gctggtcgga ttcgaaccga cgacctccag cgcccgaggc tggcatcata
     1861 ccaagctaga cgacaacccc tcgttagtct atttcaaaat taccttaata taatataagg
     1921 ttcgggttct gattgtcata cctgctttct agcgctacag tgcatattaa agttcatctg
     1981 taaatggaaa gttaatttgt ctagacgtac catccactaa gcttctttca attaattttc
     2041 ttacaatgtt tgccgcaact ggtaatgctc ccgtagcacc aggtgaattg taattcaata
     2101 tgtgtaagga agaatcacct tctacaagta aactctctga tgcaaaatct ccatttttgt
     2161 caattaacaa tgatctaaca cccgccatgc ctctttgttt gaaatcagat ggatttaaag
     2221 atggcaaaaa tctccttact ctatttatca tattcgtctt agaaaaagaa ctagaaaatt
     2281 catttgctac caagtagagg aactgtttac ttagaagtaa ttttaatact cctactttgc
     2341 atgatccaaa aagtttcgga acggcatttt tcaggttatc atataaagta tatgaatatg
     2401 gaccaaaaac agggacagca tttggtccta cttcgcatct tccatcactt ctaataatcc
     2461 agtggggatc caaaaaagga tactctgtat atcgtggtac catataaata ctccttctgg
     2521 taaggttacc atatttttgt ggagctatcc agtattctcc cctaaaatga agatcagtgt
     2581 attcttttgc aagatcaata ctatgggcaa tatcaagaga atttccacca gctgcattta
     2641 tcacataatc agtagttata tttttaacag tgccgatgat tgtcattttt ctatttgctt
     2701 ctgcgcttgt gttgatgtaa attgatctaa atttgttttc aaacgatgtc ttacaaccaa
     2761 acttgatagc gtcttccata agtctttgat ttatgagacc ataatcagtt gaagcatctc
     2821 gaaagcatat aaacccagac tcacatttta cattaggctc aatttgtagc atttcatctt
     2881 tacttaaaaa ttttacatcc tcatttctca atccattctt gagagcccat tggacatgtt
     2941 catgtaaaat gtcaatttct ctgtcattag ttgcaacctc aactactcca tcttctttaa
     3001 atggtaaatt gtgtactgta cagtaacgtt ttagcatgtc aaatcccttc aatgcatagg
     3061 tcgcagttga tgactttttt tctgggttat aatagaacgg agcatgaact tttccagtat
     3121 ttctactact agtatgcaat gcaacttttt tttcctgttc catcacgacg attgttgaat
     3181 ctgtcatgac ggaaagaaaa taagcaatag cacaacctag tatgccccca ccgataactg
     3241 taacatcata actatcttgc aaactattac caactaccat aatcgatcaa attactgatg
     3301 caataatcat tactcctatt cttcataata ctattcaatt agaatatcat ttcatcttct
     3361 tattcctata atttatatga aaatctaatg atttgtaaaa ggcaacaatc gaggatgcat
     3421 ttaatatttt tccattaaat agtaactttt ttatttcatc aattgttaga attgtggtct
     3481 ctattatctc catcatcccc aattcttgtt tcctttcatt aactaaatca taaccgacaa
     3541 ataaattgcc tgtttgttca aacatagtat aatctaatg
//
LOCUS       DASUMD010000102         2434 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_576436, whole genome shotgun sequence.
ACCESSION   DASUMD010000102 DASUMD010000000
VERSION     DASUMD010000102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2434)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2434)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2434
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_576436"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(112..717)
                     /locus_tag="VFX26_02865"
     CDS             complement(112..717)
                     /locus_tag="VFX26_02865"
                     /inference="COORDINATES: protein motif:HMM:NF020398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1802 family protein"
                     /protein_id="HEX5573448.1"
                     /translation="MSMLALKEWSIICKAMEEGKQTILLRKGGILEYKKGFEISQKLF
                     LLYPTLEHQTAEYLQSNYLQEYELILKRNSSEIVQDKVNTIRIIARIEAIQEFHDHEL
                     LSKLEKYHIWNEKYVNMRMNYNPKKPMNALLLRIYKLPQPISIDVNPGWAGCKSWIDI
                     EFTNKYGNQYGNINELLNQSVPVIKDKDFQKIHDNFMEIWN"
     gene            complement(714..1442)
                     /locus_tag="VFX26_02870"
     CDS             complement(714..1442)
                     /locus_tag="VFX26_02870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chlorite dismutase family protein"
                     /protein_id="HEX5573449.1"
                     /translation="MSFDKARNNQKGTKDKKNDINSPTMYLNFSFYKVDSKWRWLNDI
                     GKDEAAKEFSSLIDIANTKMKVRTYSTLGLRKESDFMLWSISDSIEKIQVLTSKVYTT
                     VLGKYIDASEVYLSASRPSVYSNQVTPSFMEDVEPLKYNIVYPFIKSREWYLLPFEKR
                     SEMMKEHINVGRKFPQIKLNTSYSYGIGDQDFMLAFETDNLMDFQDLIIKLRETRVNK
                     YVVKDTPMIVCVYKKIFDIIKSLG"
     gene            complement(1576..>2434)
                     /locus_tag="VFX26_02875"
     CDS             complement(1576..>2434)
                     /locus_tag="VFX26_02875"
                     /inference="COORDINATES: protein motif:HMM:NF015666.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573450.1"
                     /translation="GLPVAKYVKEKGFDVYGYDNNPLVVENAERQYGIKKVDNFRDID
                     VFLICISTHREDDISSPQVDGLLAITRKIAKEATNGKLVSIESTVPRGTTRKMFEILE
                     HRFHVVHAPHRWYALEEDLHGVNQLRVIGGVCDCCLRTGIRFYDGVDHGVEKEDLGYY
                     SGNKSYRSLGIPMYSVSTVELAELSKIIENADRYLQIAFAEDLYMFCKANGISFTELR
                     DAVNTKWNVNILEPRDGIGGHCIPKDTRMFLESSEIKSKILMSAQEVDKDYRKYIEGL
                     VKDVNKINH"
BASE COUNT          717 a          499 c          335 g          883 t
ORIGIN      
        1 tgattgcttc atcatcttct attttcttac cccaccaatt tagaccaata gtccatgctc
       61 caaacccaat ttcgcttact ttaatatcgc ttctgcccaa tcgtctgtat ttcaattcca
      121 aatctccata aagttatcat gtattttttg aaaatcctta tcttttataa ctggcacact
      181 ttgattcaac aattcattaa tgttcccata ttgattccca tatttattag tgaactcaat
      241 gtcaatccaa gatttgcatc ctgcccatcc aggatttaca tctattgaaa tgggttgagg
      301 cagcttgtaa atcctgagca aaagggcatt cataggtttt tttggattat aattcattct
      361 catgttaaca tatttttcat tccatatatg atacttttct aatttagata agagttcatg
      421 atcatgaaat tcttgtattg cctcaattct agctataatc cttatggtgt ttactttatc
      481 ctggacaatt tccgagctat ttctttttag tattaattca tattcttgta aataatttga
      541 ttgcaaatat tctgcagttt gatgctccaa tgtcggatac aacaggaata atttttgact
      601 aatctcgaat cctttcttat attctaaaat tccacccttt cgtagcaata tcgtttgttt
      661 accctcctcc attgccttac aaataatgga ccattctttc agagctagca tactcatccc
      721 aaactcttga ttatgtcaaa aattttttta taaacacaaa ctatcatggg agtatctttt
      781 acgacatact tgtttactcg ggtttcacga agtttgataa tcaaatcctg gaaatccatc
      841 agattgtccg tctcaaaagc caacataaaa tcctgatcac caattccata tgagtaggaa
      901 gtattcaatt ttatctgtgg aaattttcta ccaacattaa tgtgctcctt catcatctca
      961 cttctttttt cgaaaggaag aagataccat tctcttgatt taatgaatgg ataaactata
     1021 ttgtatttta aaggttcaac gtcttccatg aagctcggag taacttggtt cgagtaaact
     1081 gatggacgtg atgccgacaa atatacttcc gatgcatcaa tatattttcc aagtactgta
     1141 gtgtaaacct ttgaggttaa tacttgaatc ttttctatcg agtcagaaat gctccatagc
     1201 ataaagtcag attcttttct caaacccagc gtggaatatg tcctaacctt catctttgta
     1261 ttggcaatgt ctatcaatga cgaaaattcc tttgcggcct catcctttcc tatgtcatta
     1321 agccatctcc attttgaatc cactttgtaa aaggaaaaat tgagatacat agtaggtgag
     1381 ttgatatcat ttttcttgtc cttagtccct ttttgattat ttcttgcttt gtcaaaactc
     1441 atgttaatac acaaatatta tgaatattta aattaaattt agaacctcat taatacttca
     1501 gactttagga ggatagtttt cagaaataat ttgagaaaaa atactacaaa aattgtcaga
     1561 aaattaatac aaatgttagt ggtttatttt attcacgtct ttaaccaatc cttcaatata
     1621 ttttctgtaa tccttgtcta cttcctgagc agacatcaat attttactct taatttcaga
     1681 tgattctaag aacattcgtg tatccttcgg aatacaatga cctccgatac catccctcgg
     1741 ttctaaaatg tttacgttcc atttagtatt tactgcatct cttaattctg taaacgaaat
     1801 accatttgcc ttacagaaca tgtacagatc ttcggcgaaa gcaatctgta agtatctgtc
     1861 agcattctcg ataattttgc ttaattctgc aagttctacg gttgaaacag aatacattgg
     1921 tatgccaaga cttctatatg atttgtttcc actgtaatat cccaaatctt ccttttctac
     1981 tccatggtcc actccatcgt aaaatctaat gcctgttcga agacaacagt cacaaacccc
     2041 gcctattact cttaattgat taacaccgtg aagatcttct tcaagtgcgt accacctatg
     2101 cggtgcatga accacatgaa atcgatgttc aagtatttca aacattttac gagtagtacc
     2161 ccttggaacg gtactttcaa tagatactag ctttccattt gtagcctctt tagctatttt
     2221 tcttgtaatg gccaataatc catcaacctg tggagaggag atatcatctt ctctatgggt
     2281 agatatgcat atcaaaaaga catctatgtc cctgaagttg tctactttct ttatgccata
     2341 ttgtctttct gcattttcca cgactagcgg attgttgtca taaccataaa catcaaatcc
     2401 cttttccttg acatactttg caactggaag acct
//
LOCUS       DASUMD010000103         3914 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_908072, whole genome shotgun sequence.
ACCESSION   DASUMD010000103 DASUMD010000000
VERSION     DASUMD010000103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3914)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3914)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3914
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_908072"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            38..703
                     /locus_tag="VFX26_02880"
     CDS             38..703
                     /locus_tag="VFX26_02880"
                     /inference="COORDINATES: protein motif:HMM:TIGR00405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor Spt5"
                     /protein_id="HEX5573451.1"
                     /translation="MEGSIIEKEDNFDELDNVFTENSDVKTETTSERTDKVNEENSLE
                     SGPSELGTANDKSPDSNAGGENSQIDTGSQESDSKFFAIRTTGGQEHIVVNLAQNRIN
                     SKKISVRSILLLDSFKGYIIIEAPNSNIAYDALIGVRHVKGQIRGELPYKDIESYLVK
                     RPVVTELNIDDTVEVIAGPFKSMKAKITRVDYEKQEATVLLLDSPYQIPVTVDANYLK
                     KAS"
     gene            756..1238
                     /locus_tag="VFX26_02885"
     CDS             756..1238
                     /locus_tag="VFX26_02885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HEX5573452.1"
                     /translation="MEQKKSISALVSGGEASAGPPLGPALGPMGINVLQVVNTINEKT
                     KEFHGMKVPVKVEIDPDTKKFNVEVGVPPTTALIAKEANVSKGSGTAGKDYAGNISME
                     GIVKIAKMKIDVSYSTSIKSSVKEIIGSCVSSGIKVENKPAKEIYADLMAGKFDKMFA
                     "
     gene            1325..2968
                     /gene="thsB"
                     /locus_tag="VFX26_02890"
     CDS             1325..2968
                     /gene="thsB"
                     /locus_tag="VFX26_02890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thermosome subunit beta"
                     /protein_id="HEX5573453.1"
                     /translation="MSVQQGSAGGMPVLILKEGASQTKGRDAQKNNIAAAKLISEVVR
                     SSLGPRGMDKMLVDGLGDVTITNDGATILKEIDVQHPAAKMMVEISKATDNEVGDGTS
                     SVVVLAGALIEKAEELITKDVHPTIIVDGYRKSALKSIEIFNQLAQKIDGRNKSELMR
                     VAKTSMQTKLVSKESDQLSEVVVNAALQVSEPIESGHNIDIDDVKVEKKAGGSLRDTK
                     LIKGIVLDKEVVHGGMPKRVEKAKIALINSALEIEKTEFDAKININSPDQMKMFLEEE
                     NKMLKNMVDKIISSGANVAICQKGIDDVAQHYLAKSNILAVRRVKESDMTKLSRATGA
                     RNVNNLEDLSSKDLGLADLVEERKVETDKWVFIEGCKHPKAVTILVRGGSQRVVDEAE
                     RSLHDALMVTKDVMEKPLIVAGGGSPESFVAGKLRDWSSTLSGREQLAADKFAEALEV
                     IPLALAENAGMDPIDTLTELRSKQAKGSKWSGIDARSAKIVDMSKLDIVEPLIVKEQI
                     IKSATEVASMILRIDDVIASSKSGGAPGGGGMPPGMGEM"
     gene            complement(2982..3230)
                     /locus_tag="VFX26_02895"
     CDS             complement(2982..3230)
                     /locus_tag="VFX26_02895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573454.1"
                     /translation="MTAKIESKCTLCARRVIQEKYCEYHYEALRSLMDHYEVWKSRYG
                     EISWYDYLTRLRKIKYTGKWVKEVIEIELEVKTDKKMR"
     gene            complement(3230..3736)
                     /locus_tag="VFX26_02900"
     CDS             complement(3230..3736)
                     /locus_tag="VFX26_02900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573455.1"
                     /translation="MPPNTTIIVQMNSMIKLEYYGVSPYELEAIYNTLSKFSGVSEKN
                     LEDSEHLSLLKIEFPVAYDDYFFQSFGFDNWQKIKYIFKEMKRRRGRKDFKIILSFSG
                     ISTDTNSKLLFSLTSDIGPQFEYALEKLAHMADSVHTQVKDLETNRQVMSYTYDAITM
                     KWVLSDKF"
BASE COUNT         1372 a          639 c          798 g         1105 t
ORIGIN      
        1 ttataaattg taacaagcta tcgtatcctg aagataattg gaaggtagta ttatagagaa
       61 agaagacaat tttgatgagc tggacaatgt ttttactgaa aactcagatg tcaaaactga
      121 aactacctcc gaaaggactg ataaggtaaa tgaagaaaac tcattggaat ctggtccttc
      181 cgaattaggt acagccaatg ataaatcgcc tgatagtaat gctggcggtg aaaactctca
      241 aatagatacc ggcagccaag aatcggattc aaaatttttt gcaataagaa caactggcgg
      301 ccaggaacat attgtcgtaa atttggcaca aaataggata aattcaaaga aaatttctgt
      361 acgttctata ttgttacttg atagttttaa agggtacata ataatcgaag ctcctaactc
      421 caatattgct tacgacgctc ttattggggt tagacatgtc aaaggtcaga tccgtggaga
      481 attgccttat aaagacattg agagttattt ggtaaaaaga cctgtagtaa cagaattaaa
      541 tatagatgat acagtcgagg ttattgccgg accattcaaa tctatgaagg cgaagataac
      601 tagggttgac tatgaaaagc aagaggcaac tgtcttgttg ttagattctc catatcaaat
      661 acccgttaca gtggacgcga attatttaaa aaaggcctca tagaaaagtg caaaaaccat
      721 taaattaaag agtataaatc taaaagtggt ctgagatgga acaaaaaaaa tctatttctg
      781 ctcttgtaag cggtggcgaa gctagtgccg gacctcccct tggacctgca ttaggaccca
      841 tgggtattaa cgtattacag gtagttaata cgattaatga gaaaaccaaa gaatttcatg
      901 gaatgaaagt ccctgtaaag gtagagatag atcctgatac aaaaaaattt aacgttgaag
      961 ttggtgtacc tcccactact gctttaatag caaaggaagc aaatgtatcc aaaggttccg
     1021 gtacagcagg aaaagactat gctggaaata tttccatgga aggaatagta aaaatagcta
     1081 aaatgaaaat tgatgtttca tattcaacta gcataaaatc aagcgtgaag gaaattatag
     1141 gctcttgtgt aagcagcggc attaaagtag aaaacaaacc agcaaaagag atttacgccg
     1201 atttgatggc aggaaaattc gataaaatgt ttgcctagat ttcaatattg tttctatttg
     1261 tagcaaattt aaaatatccc aaaattggat tttacattaa gttttaggag atatgatcta
     1321 ataaatgtca gttcaacaag gttcagcagg cggtatgcct gttttgatat tgaaagaagg
     1381 agcaagtcag accaagggac gcgatgcaca aaaaaacaat attgccgctg caaaattgat
     1441 ttctgaagtt gtaaggagct ctctaggtcc acgaggaatg gataagatgt tagtagatgg
     1501 gctaggagat gtaacaataa ctaacgatgg agcaactata ttaaaagaaa tagacgttca
     1561 acatccggca gcaaagatga tggtagaaat aagcaaggct actgataatg aggtaggtga
     1621 cggaacttca tctgtagtag ttttagcagg cgcattgatc gaaaaagcgg aggaattaat
     1681 cacaaaagat gttcatccta ctattattgt tgatggatat agaaagagtg cattaaagag
     1741 tattgaaata tttaatcaat tagcacaaaa aatagacgga cgaaacaaat ctgagttaat
     1801 gagggtagca aagacatcaa tgcagaccaa acttgtgtct aaggagtctg accagttgtc
     1861 tgaagtggtt gtcaatgcgg ctttgcaggt ttcagaaccg attgaatctg gtcataatat
     1921 agacattgat gatgtcaaag ttgaaaagaa ggcaggcggt tcattgcgag ataccaaact
     1981 aattaaggga atcgtactcg ataaggaagt tgttcacggc ggaatgccaa aaagagttga
     2041 aaaggcaaaa attgctctta tcaattctgc tttagaaatc gagaaaactg aatttgatgc
     2101 caaaatcaac attaattcac cagatcagat gaaaatgttc ctcgaagaag agaacaagat
     2161 gctaaaaaac atggtagaca aaattatttc gtcaggtgca aatgtagcta tttgtcaaaa
     2221 gggtattgat gacgttgctc aacattacct ggccaaatcc aacattctgg ccgttcgaag
     2281 ggtcaaagaa agtgatatga ccaaattgtc cagagcaaca ggtgctcgaa atgttaataa
     2341 tcttgaggac ttgagctcca aagatttagg tttagcagat ctcgtagaag aaagaaaggt
     2401 tgaaaccgac aaatgggttt tcattgaggg atgtaagcat ccaaaggcag ttactattct
     2461 tgtcagggga ggttcacaga gggtcgttga tgaggcagaa cgctcattac acgatgccct
     2521 aatggtaact aaagatgtca tggaaaagcc tttgatagtt gcaggcggtg ggtcaccaga
     2581 atcttttgtt gcaggaaaac taagagattg gtcatccaca ttgtccggaa gagaacaatt
     2641 agcagcagac aagtttgcag aagcactcga agttattcca cttgctttag cagagaatgc
     2701 tggaatggat ccaattgata cacttacaga actacgttcc aaacaagcaa aaggatccaa
     2761 atggagtggt attgatgcaa gaagtgcaaa gattgtagat atgtccaaac tagatattgt
     2821 agaacccctt attgtcaagg agcaaattat aaaatcagcg acagaggttg catctatgat
     2881 ccttagaata gatgacgtaa tagcttcaag caaatctggt ggtgctcctg gtggtggcgg
     2941 catgcctcct ggcatgggag aaatgtaatc aaaaacaaac attatctcat ttttttatca
     3001 gtttttacct ctaactctat ttcaatgact tctttgaccc atttaccagt atactttatt
     3061 tttcgcaatc tagtaagata atcataccag gaaatttcgc cgtaacgact tttccaaact
     3121 tcataatgat ccattaagga ccgcaatgcc tcataatgat actcacaata tttctcctga
     3181 atcacccttc ttgcacataa tgtgcatttt gactcgatct ttgcagtcat tagaatttat
     3241 cagataatac ccacttcata gtaattgcgt catatgtata tgacataact tgtctatttg
     3301 tttcaaggtc tttaacttgt gtgtgaacag agtccgccat atgagctaat ttttcaagtg
     3361 catactcaaa ctgaggacca atatcactag ttagcgaaaa gagcagcttc gaatttgtgt
     3421 ctgttgatat tccagaaaat gataaaatta tcttgaaatc ctttctacct ctcctacgct
     3481 tcatttcctt aaaaatatac tttatcttct gccaattatc aaaaccaaat gattggaaaa
     3541 aataatcatc ataagcgaca ggaaactcga tctttaacaa gcttagatgt tcggaatctt
     3601 ctaaattttt ttcacttaca ccagagaatt tagataaagt attatagata gcttctaatt
     3661 catagggaga tactccatag tattccaatt taatcatact attcatttga acgattatgg
     3721 tggtgttagg aggcattaat cttttgaatt taagcaactt gatacacata gcaattttcg
     3781 gtagattttt aagtgtacgt caataaaatt tcgtggacgc tttgaacacg attaagattc
     3841 ttgaaagaga taataatcat atagttattg aatttaatga tattccaagg cagtatgtca
     3901 atgcattgag aaga
//
LOCUS       DASUMD010000104         3216 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_23544, whole genome shotgun sequence.
ACCESSION   DASUMD010000104 DASUMD010000000
VERSION     DASUMD010000104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3216)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3216)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3216
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23544"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..301
                     /locus_tag="VFX26_02905"
     CDS             <1..301
                     /locus_tag="VFX26_02905"
                     /inference="COORDINATES: protein motif:HMM:NF014177.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009007 - site-specific
                     DNA-methyltransferase (adenine-specific) activity
                     [Evidence IEA];
                     GO_process: GO:0032775 - DNA methylation on adenine
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HEX5573456.1"
                     /translation="KDDFIYLDPPFHPISNTANFTSYTNNGFTLEDQKELAIIFNELT
                     RRGCRLLLSNSNTEEIRRLYSDYSHLTEVTTVNRSINAVASKRVGHTELLIRNYC"
     gene            553..2673
                     /locus_tag="VFX26_02910"
     CDS             553..2673
                     /locus_tag="VFX26_02910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase family protein"
                     /protein_id="HEX5573457.1"
                     /translation="MNSQSDTSNKSVFLSPRSIAIIGASEKPGIGRAIFTNIKNGYKG
                     KIYPVSPTNEYVSGIKAYKSVLDIPEDIDLAVVATPNKIVPKVMEEVGMKKIQGSIIV
                     SAGFKEVDEQGAALEREVAAICKKYGTRVIGPNCLGIMSLSKQNMMNSTFLKITPKHG
                     NIALVSQSGAICAATVEDAMAQGIGFSKVISMGNKIDVDENDVLELLCHDPETSVIIM
                     YLEDIHDGRRFMEIGRKTTKQYKKPIVVIKSGRTPEGAKAAMSHTGALMGADEVYDAL
                     FLQSGVIRVDTMQELFDLATAFSKQPIPKNDKGTVIVSNAGGPAIISTDACSKYGMKL
                     ADISSSTEEIAKVIPAHGSARNPVDIVGDADFNRFEKVLNEVVSNPNVGSIVTMCTPS
                     ATLDYNDLAKTIVKTTANSGKTSLAALMGLAEGTENKQILSDGGIPYFPYAEPAIRTL
                     KAMYDFSFWTAGKEAEIKKFDVDKEIVKQIFDKVTKEGRKHLLEEEGYDVLNAYGFPR
                     PKSYLCTNGEECVKRAEEIGYPVVMKIMSQDIIHKSDAGGVKVGLKNKQQVSSSFNEI
                     IANAKNYKKDASIKGVLVQQMIESARETILGAKHDKLFGSLIMFGLGGIYVEALKDVV
                     FRLAPIDEQEALKMVESIKTYKILKGIRGQPPSDIRVLVECLQRLSQLVTDFPEITEF
                     DMNPLLVLEVGKGACAVDVRIGLA"
     gene            complement(2724..>3216)
                     /locus_tag="VFX26_02915"
     CDS             complement(2724..>3216)
                     /locus_tag="VFX26_02915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573458.1"
                     /translation="KSIIAQYRKFDAPEDLPQGEEPKSSQLSNTTQVSDIKNTDKNSK
                     TNINSPSSLNTQNDFISIQSLVGMPAYDWDAMLIGNVQEIGLKRTSKGKMEINLKIPK
                     KSNNQNLEVAWKSISKIGDIILLENSETSEPSQLGKCSYCSYQNESDAVFCSECGKKI
                     SNE"
BASE COUNT         1102 a          541 c          621 g          952 t
ORIGIN      
        1 aaaagatgat tttatatacc ttgatcctcc attccatcca atcagtaata ctgcgaattt
       61 taccagttat accaacaatg gttttactct tgaggaccaa aaagaacttg caattatatt
      121 caatgaattg acaagaagag gttgtagact cttacttagt aactcaaata cggaagaaat
      181 tagaagactt tattcggact attctcatct tactgaagta accactgtga acagatctat
      241 caatgcagtt gcctcaaagc gggtaggaca tacagaattg ctgataagga attattgcta
      301 attactgaac gcaaagaggg ttagtaacta ttagatctta tatcgttact atttctcata
      361 ctattacttt tcttactaat atatagaaaa gaaaatggta gaaatagatg caacaaatca
      421 gttcttaatt tgcacatgat ccatcttata aaaaatcctg tagtaattaa tgatattact
      481 tagatatcat attacggttg cgattatacg atatcactgc atttataact atgtaggcaa
      541 aattattttt gtatgaattc gcaaagtgac acatccaaca agagtgtatt tctatcaccc
      601 agatctattg caataatagg cgcctccgaa aaaccaggaa taggaagagc aatttttaca
      661 aatataaaaa atggttataa aggcaaaatc tatcctgtta gccctacgaa tgaatatgtg
      721 tctggaatca aggcgtacaa aagtgtcctt gacataccag aggatataga tctagccgtt
      781 gtagccactc caaacaagat tgtccccaaa gtgatggaag aagtaggaat gaaaaaaatt
      841 cagggttcca ttattgtttc agcaggattc aaagaagttg atgaacaagg tgcagcgctt
      901 gaaagggagg ttgctgccat atgtaagaaa tatggtacca gagtcatcgg tccaaattgt
      961 ttgggcatta tgagcctatc aaaacaaaac atgatgaatt ctacattctt gaaaattaca
     1021 ccaaaacatg gaaatattgc tctcgtgtca caaagtggag ctatttgtgc cgctactgtt
     1081 gaggatgcta tggcacaagg aataggattc tcaaaagtaa tcagtatggg gaacaagata
     1141 gatgttgatg aaaatgatgt tttagaacta ctatgtcacg accccgagac ttctgtaatc
     1201 ataatgtacc ttgaagacat tcatgatggt aggagattca tggaaattgg aaggaaaaca
     1261 accaaacaat acaagaaacc aatagtagtc ataaaatctg gcagaactcc agaaggtgca
     1321 aaggcagcta tgtctcacac gggcgctttg atgggagctg atgaggtgta tgatgcactt
     1381 tttttacaaa gtggcgtaat cagagttgac acaatgcaag aactctttga tcttgctacc
     1441 gcattttcaa agcaaccaat tcctaaaaat gacaagggta cggtaatagt atcaaatgca
     1501 ggtggacctg ctataatatc cacagacgca tgttcaaagt atggcatgaa attagctgat
     1561 attagctctt ctacagaaga aatagcgaaa gttatacctg ctcatgggtc tgcgaggaac
     1621 ccagtcgata ttgtgggaga cgcggatttt aatcgatttg aaaaggtcct caatgaagtg
     1681 gtttcaaatc ctaatgtagg atcaattgtt actatgtgta ctccatcagc tactcttgat
     1741 tataatgatc ttgcaaagac tatagttaag accactgcta attctggaaa aacctcactt
     1801 gcagcactta tgggtcttgc agaaggaaca gaaaataaac aaattctttc tgatggtggc
     1861 atcccctact ttccatatgc agaaccagca ataaggactc taaaagcaat gtacgacttt
     1921 tccttttgga ctgccggaaa agaagctgaa attaaaaagt ttgatgtaga taaggaaata
     1981 gtcaaacaaa tattcgataa agtaacgaag gaaggaagaa aacatctttt ggaagaagag
     2041 ggatacgatg tacttaacgc atatggattt ccgagaccta aaagttacct ttgcacaaat
     2101 ggggaagaat gtgtaaagag agccgaagaa attggatatc ctgtggttat gaaaatcatg
     2161 tcacaagaca taatccacaa atcagatgct ggaggagtaa aagtaggcct caagaataaa
     2221 caacaagttt catcctcttt caatgaaata attgccaatg caaagaatta caaaaaagac
     2281 gcaagtatta agggagtact tgtgcaacaa atgatagaat ctgccagaga gacaattctt
     2341 ggagcaaaac atgacaagct ctttggttct ttgatcatgt ttggccttgg tggaatttat
     2401 gtagaagccc tcaaagatgt agtattcagg ctggccccta ttgatgaaca agaagcattg
     2461 aagatggtag aatcaatcaa aacatacaag atattgaaag gtataagagg gcaaccgcct
     2521 tctgatatta gggtattagt agaatgcctc cagcgattat ctcaacttgt tacagatttt
     2581 cctgagatta cagaatttga tatgaatcca ttattggtac tggaagtagg aaaaggggcc
     2641 tgtgcagttg atgtgaggat tggccttgca taaatagcca gtaactaata actaatatct
     2701 actttaattc cgcattacaa ctattattca ttactaattt tctttccaca ttcagaacaa
     2761 aataccgcat cgctttcatt ttggtaacta caataagaac atttacctaa ttgactgggt
     2821 tccgaagttt ctgagttctc tagtaaaatt atatctccaa ttttggaaat acttttccaa
     2881 gcaacttcta aattttgatt gttgctcttt ttaggaatct taagatttat ttccattttt
     2941 cctttagaag ttctttttag accgatttct tgaacgttac caatcaacat tgcatcccag
     3001 tcatatgcag gcatcccgac aagagattga atagaaataa agtcattttg tgtattcagt
     3061 gacgacggtg aattgatatt agttttagaa tttttatcag tatttttaat atctgatact
     3121 tgagttgtat ttgataattg ggatgatttg ggttcttctc cttgtggtaa atcttctgga
     3181 gcatcaaatt ttctatactg cgcaattata cttttg
//
LOCUS       DASUMD010000105         8388 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1128982, whole genome shotgun sequence.
ACCESSION   DASUMD010000105 DASUMD010000000
VERSION     DASUMD010000105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 8388)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8388)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8388
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1128982"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..239)
                     /locus_tag="VFX26_02920"
     CDS             complement(<1..239)
                     /locus_tag="VFX26_02920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein"
                     /protein_id="HEX5573459.1"
                     /translation="MSQEIQQLRKSIFDELTKIVDPEIGVSIMELELIDKVDIEEGKV
                     KIDLHLTSPFCPAIFGFKIAQDIRDNVYKIQGVTES"
     gene            377..1870
                     /gene="argH"
                     /locus_tag="VFX26_02925"
     CDS             377..1870
                     /gene="argH"
                     /locus_tag="VFX26_02925"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004056 - argininosuccinate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HEX5573460.1"
                     /translation="MYRSRHKQDLDKRALNFLSSIDIDDKILYYDILCTKAHVIMLHD
                     IRLLSKDELVEIVNELDRILRHPEKLVKEGFEDIHEALEAQLIRKIGVDVGGKVQTGR
                     SRNDQVITDIRIKARDDLIDITIQLNNLVRLLLQKSEENLNSIMPLYTHLQQAQIGNF
                     AHYLLAYCESLMREIDRMLSLYNRINQSPLGAGPIGGSLFPIDRKMTAKLLGFDNLIS
                     NTIDATSRDFMIEFVSDLSSIMITLSRIAEDMIIWSSQEFGFIEIHDKHASTSSAMPQ
                     KKNPDPLELIRSKTAIVIGNLTSILTILKSLPSGYSRDLQDTKVPFWNSVDIVSSSLE
                     IAYDVIASLIVNKDVMTKASNTSYAMALDIAEVLVMNQKIPFRIAHKLVGALVNVAMN
                     KKDGKSLKYLSSSDVTEVLEKTKIKIPPGKLVQIIENSTPQKSIANRRSEGSPSPQQQ
                     IKTIKNYRLLLEKYFNEVGKKKKNVDSSKENITNTINLIKTKSSSQQ"
     gene            complement(2029..2964)
                     /gene="argF"
                     /locus_tag="VFX26_02930"
     CDS             complement(2029..2964)
                     /gene="argF"
                     /locus_tag="VFX26_02930"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004585 - ornithine carbamoyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEX5573461.1"
                     /translation="MISLSKKYLTSIEDLTAEEILNLIEHAIEFKKNNDGNSSNQSLS
                     GKTLALLFEKPSTRTRLSFETAMFQLGGNTIYLNSNDLQLSRGESIEDTSRTISLYVD
                     CLVARVNSHNTILELVQNCKIPVINGLSDLYHPCQILADLMTILEHKKSFEDLTLAWV
                     GDGNNVCNDLLIGCAKMGININAAIPQSYEPPQPILDVVIKESKLKNSRFTIVREPID
                     AVKNADVVVTDTFVSIGKEKEDEKRKSTFIPKYQVNGKLMGYSKDDAIFMHCLPAKRG
                     QEVTSDVIDGKKSVVWDEAENRLHVQKSLLASLLG"
     gene            complement(2948..4378)
                     /gene="ftsY"
                     /locus_tag="VFX26_02935"
     CDS             complement(2948..4378)
                     /gene="ftsY"
                     /locus_tag="VFX26_02935"
                     /inference="COORDINATES: protein motif:HMM:TIGR00064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005047 - signal recognition particle
                     binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HEX5573462.1"
                     /translation="MFEKLRKIFSETTKNLGQKSFSKKDIESILDELQISLMENDVAH
                     EIVDEMTSKIKTEMLDLRRERNENSDEVITTKLYSFLHELFLSTNTKTDIIHSVLEKK
                     KSKAGPYSIIFLGINGTGKTTTIAKFCKLLRDQGISVVLAAADTHRAGAIEQITHHGN
                     NLNVKVISQRYGADPSAVARDALEHAKKNYIDVVLIDTAGRMQTSKNLMEEVSKIIRV
                     TKPDLKIFVGDSLAGNDTVNQAREFFQYTKYDGSILTKSDADSKGGAAISIAYLTHKP
                     ILYLGMGQGYGDLEEFDHDRFLDSIFKDRVYEKTSKDLTQGGISSIDDIGKKESVIEI
                     QNMDLQSEKTAHETPANDVDKLMNNEEQLSLSPLSDTESKEISDEKKTVDGQLNHAPD
                     QEKLETNVEMSEPKSKGGSFFNKLFKENKEKKDADNGKQNIIDNIETKKEKSKKENKT
                     KSESENEKEKEGVVYLTDDDINDLIK"
     gene            complement(4399..4857)
                     /gene="pfdA"
                     /locus_tag="VFX26_02940"
     CDS             complement(4399..4857)
                     /gene="pfdA"
                     /locus_tag="VFX26_02940"
                     /inference="COORDINATES: protein motif:HMM:TIGR00293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prefoldin subunit alpha"
                     /protein_id="HEX5573463.1"
                     /translation="MTSRENSKDQISAEQKISEMLQQSKILEAYMNDILTKESTVTRL
                     ITEAHLASEAIRELSSTNQEESLVPIGIGVYLKVTVPQVRNLLVNVGSGVTIEKSKEN
                     AKNYVELKIKEFDLALKQLQSQKEQVAIRMNQLQNEVNTEMQKSQRAQNS"
     gene            complement(4962..5528)
                     /locus_tag="VFX26_02945"
     CDS             complement(4962..5528)
                     /locus_tag="VFX26_02945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573464.1"
                     /translation="MSNITTPIMYYSIERRITARTVYLIVFYISAIFMATITFYALYQ
                     SIVEYAATGKIVIGEILVKTEFPFKGLSKLITYLMIVSVIAWYCVTKLGADKVKEVSP
                     ALRSILQIIVLAIVVVSLYEFVYNFVVWSSMITLNALGGSINLDSINIPYPNPQTPWN
                     LVFATKMSLAAFLISAHGFYIISKKGKT"
     gene            5706..6656
                     /locus_tag="VFX26_02950"
     CDS             5706..6656
                     /locus_tag="VFX26_02950"
                     /inference="COORDINATES: protein motif:HMM:NF013528.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HEX5573465.1"
                     /translation="MRVIICSHEADIDGIYSASVALMKFPRANLSFYNNGLDNFKKMF
                     DYIKNESKKSATGLVVISDLGINDDKVSALCVDSIQYLKKRQWSIIWVDHHPWQKKSL
                     MSIRKLCKLFHNSSGKKCATEIMYEKFMYNNKSAEQLKMIAHSSDFMTDIKRHDSRVS
                     ELIHFYRNSANSRQKLDFLAQKASNGILWDSDMQEDYVKFLKVADFQKRESLKTLTIK
                     KILSFDVAFVFIYPYVQASLFSHELFSNLKVDLVMLINRHGNVSIRRNSDRLSCSKIA
                     AYLVEGGGHEFASGGMLKSNPKDFTACIKEMQEAVVKSLK"
     gene            6759..6926
                     /locus_tag="VFX26_02955"
     CDS             6759..6926
                     /locus_tag="VFX26_02955"
                     /inference="COORDINATES: protein motif:HMM:NF015561.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573466.1"
                     /translation="MASENTIGSVIYECMRCGTPVSNEELSKLPEIKCICGFRVFRKA
                     RQPIVKQLKAV"
     gene            complement(7318..>8388)
                     /gene="ychF"
                     /locus_tag="VFX26_02960"
     CDS             complement(7318..>8388)
                     /gene="ychF"
                     /locus_tag="VFX26_02960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchF-related putative GTPase"
                     /protein_id="HEX5573467.1"
                     /translation="LCVHKEFGVEDNPRNSLCKDGWRFIPVELIDLPGLIKGAWEGKG
                     LGNQFLSVAAQSDVLLHIVDASGSIDASGKIAEAGAGDPIADVSDIEEELVLWYLKLF
                     EGNREKISRMTNTGMDTSRAVTEIFGGIGVKEWHVRKSINENNLTDRNIHELDSDESR
                     RFISTLREISKPSLIVANKIDLPPAAENFKRLREHNKHMFVIPSSADAELTLRRAQNR
                     GLIKYSPGDEIFDIYENTLLNEKQKWALNFIRKDVLGEYLRTGVQFALNIAVFKLLNM
                     NVVYPVSDPNKLSDKKGNVLPDAFLMKNGSSVQDLAGDIHTELSKGIVYAVDVRNGLR
                     LPGDYQIKDRDVLSIVSTMIKK"
BASE COUNT         2652 a         1559 c         1417 g         2760 t
ORIGIN      
        1 gattccgtta cgccctgaat cttgtagaca ttatcccgta tatcttgagc aatcttaaaa
       61 ccaaatattg caggacaaaa ggggcttgtc aggtgcaagt ctatttttac ctttccttct
      121 tcgatatcta ctttatctat aagttctagt tccatgatgg aaactccgat ttctgggtct
      181 acaatctttg tgagctcatc aaatattgac tttcgtaatt gttgaatttc ctgactcata
      241 tatgtacaga atttattttt atactatata actattgatt ttgttgtccc taatcgtccc
      301 taatcaagat aatgagcccc agaaaatcaa aattatatat attaataaat aagtctagca
      361 gtagtttgtt ttcatcatgt atagatcaag acacaaacaa gatcttgaca aacgtgcttt
      421 gaatttcctg tcatctattg acattgatga taaaattctc tattatgata tattgtgtac
      481 caaagcacat gtcataatgc ttcatgatat tcgcttatta agtaaggacg aacttgtaga
      541 aattgtaaat gagctagatc gaatcctgcg ccatccagaa aaactggtaa aagaaggatt
      601 tgaagatatt catgaagccc ttgaagctca attaattaga aaaattggag ttgatgtagg
      661 aggtaaagtc caaacaggaa gatcaagaaa cgatcaggta ataacagata ttagaatcaa
      721 agcaagagac gatttaattg atattacaat tcagctgaat aatctcgtca gactactatt
      781 acaaaaatcc gaagaaaatt tgaattcaat aatgcctctt tacacccatc tacaacaggc
      841 ccagattgga aactttgccc actatttgct ggcatattgt gaaagcttga tgcgagaaat
      901 agatagaatg ctttcattat acaataggat aaatcaatct ccactgggtg ctggtcccat
      961 aggaggatcg ctttttccaa ttgacagaaa gatgactgca aaactattgg gctttgataa
     1021 tttaatatca aatacaatag atgcgacttc aagagatttc atgattgagt ttgtatcaga
     1081 tttatcttca ataatgataa cattaagtag aattgctgag gacatgataa tttggtcttc
     1141 gcaagaattt ggattcatag aaattcatga caagcatgca tcaacttcta gtgccatgcc
     1201 acaaaagaaa aaccccgatc cattggagtt gataagatca aaaaccgcga ttgtaatcgg
     1261 aaaccttaca agtattttga caattctcaa atcactacct tccgggtaca gcagagattt
     1321 acaggataca aaggttccat tttggaactc agttgacata gtatcgtcgt cattggagat
     1381 agcatatgac gttattgctt ctcttatagt gaacaaagat gtcatgacca aagcatcaaa
     1441 caccagttat gcaatggctc ttgacatagc tgaagtacta gttatgaatc agaagatccc
     1501 tttcagaatc gcccacaaat tagtaggagc gctcgttaac gtagcgatga ataagaaaga
     1561 tggcaaatct ttgaagtatt tgtccagttc agacgttact gaagttttag aaaagacgaa
     1621 aataaagata cctcccggta aactagttca aattattgag aatagtactc ctcaaaagtc
     1681 gatagcgaac cgccgttctg aaggctcacc tagtccacag caacagatca agaccataaa
     1741 aaactacaga ttgctattag aaaaatactt taacgaggta gggaaaaaga aaaagaatgt
     1801 cgatagttct aaagaaaaca taacaaatac aataaatctg ataaagacca aatctagttc
     1861 tcaacaatag ttctactaat tctgatacta atctaatgca tgctatggca tactatgata
     1921 atcgttacta ttcatgtgac attcaaactt aatctagtag taattcatgg aaaaacttga
     1981 aaacaatatg gtttgaagat aataagatct aataaaaaat atcatagatt aaccaagtaa
     2041 actagcgagg agtgattttt gtacatggag tctattctct gcttcgtccc acacgacaga
     2101 tttttttcca tctatcacat ccgacgttac ttcctgcccg cgttttgcag gcaaacaatg
     2161 catgaaaatt gcatcgtctt ttgagtaacc catgagttta ccatttactt gatactttgg
     2221 aataaatgta gattttcttt tctcgtcttc tttttccttt ccaatagaga caaacgtatc
     2281 tgtaactaca acatctgcat tctttactgc atcaattggt tcccgtacta tagtaaacct
     2341 agagtttttc aattttgatt ctttaattac tacatcaaga attggttgtg gaggctcgta
     2401 actttgtgga atggcagcat tgatattaat tcccattttt gcacatccga ttaacaggtc
     2461 attgcagaca ttattgccat ccccaaccca agctagtgtt aaatcttcaa agctcttttt
     2521 gtgttctaga atagtcataa ggtcagccaa aatctgacat ggatgatata aatcagatag
     2581 gccattaatt acaggaatct tacagttttg taccaattct agtattgtgt tatgagagtt
     2641 aactcttgcc accagacaat ctacgtataa tgagattgtt ctagaagtat cttcaataga
     2701 ttcaccccta gatagctgaa gatcattgga atttagatag attgtattac cacccagttg
     2761 aaacatggca gtttcaaagc tcaagcgcgt ccgagtggat ggtttttcaa acagtaatgc
     2821 aagcgtcttc ccagataagg attgattgct actgttgcca tcattattct ttttaaactc
     2881 aattgcatgt tcaattaaat ttagaatttc ctcagcagtc aagtcctcaa tactagtaag
     2941 atatttctta cttaatgaga tcatttatat catcatcagt caaataaaca actccttctt
     3001 tctccttttc attttcagat tcagatttag tcttattttc cttcttactc ttttcctttt
     3061 tagtttcaat attatcaatt atattctgtt taccattatc agcatctttc ttttctttat
     3121 tttctttaaa gagtttattg aaaaatgaac caccttttga ttttggttca ctcatttcca
     3181 catttgtttc cagtttctct tggtctggcg catgattcaa ttgaccatca accgttttct
     3241 tctcatcact aatctctttt gattccgtgt ctgatagtgg cgatagtgat aattgttcct
     3301 cattattcat caatttatca acatcattgg ctggagtttc gtgtgcagtc ttttcagact
     3361 gtagatccat attttgaatc tcaattacag attctttttt gccaatatca tcaatggaag
     3421 atattccgcc ttgtgtcagg tctttactag ttttttcata tactctatct ttgaaaatag
     3481 aatcaagaaa tctgtcatga tcaaattctt ccaaatctcc atatccctgt cccattccaa
     3541 gatataagat aggcttatgt gtcaaataag caattgaaat ggctgcacca cctttggagt
     3601 cagcatcact ttttgttaat atcgaaccat catactttgt atactgaaaa aattctcgag
     3661 cttggttaac agtatcgttc cccgccagag agtcaccaac aaatattttc aaatcaggtt
     3721 ttgtaactcg gattatctta ctaacttcct ccattaaatt cttagaagtt tgcattctcc
     3781 cagcggtatc gatcaataca acatcaatgt aattcttttt tgcgtgttct aatgcatctc
     3841 ttgcaactgc cgacggatca gcgccatacc tttgtgagat taccttaaca ttaagattgt
     3901 taccatgatg cgttatctgt tctatagcac ctgctctgtg tgtatctgca gctgccagaa
     3961 caaccgaaat tccttgatcc cttaacaatt tacaaaattt tgcaatagta gtagtttttc
     4021 ctgtaccatt gataccaaga aagataatag aatacggacc agcttttgat tttttctttt
     4081 ccaaaacaga gtgaataata tctgtcttgg tgttagtcga caagaataac tcgtgtaaaa
     4141 aagagtataa ttttgttgtg attacctcat cggaattttc gttcctttcg cgcctcaaat
     4201 ccaacatttc tgtttttatt ttggatgtca tttcatcaac aatttcatga gctacatcat
     4261 tttccataag acttatctgc aattcgtcca gaatagactc aatatccttt ttagaaaatg
     4321 atttttgacc aagattcttt gtggtttcag aaaatatttt tcttaatttt tcaaacaaac
     4381 ggagtgcaat cctacctctt atgaattttg agctctttgg gatttttgca tttcagtatt
     4441 tacttcattt tggagttgat tcatacgtat tgcaacctgc tctttttgcg attgtaattg
     4501 ttttaatgct agatcaaatt ccttaatttt taactcaaca taatttttcg cattttcctt
     4561 agacttttca atagtaacgc ctgagcctac attaacaagc agatttctta cttgtggaac
     4621 tgtgaccttg agatatacgc caatccctat cgggacgaga gattcctcct gattagtaga
     4681 agacaattct cgaattgcct ctgaagccag atgggcctct gttataagtc tggttactgt
     4741 ggattccttt gttaaaatgt cattcatgta agcttccagt atttttgatt gctggagcat
     4801 ctcactgatt ttttgctcag ctgaaatttg gtctttagaa ttttctctag aggtcatctt
     4861 attactacat tttgtgagta aaaaacgggc atataacttt gactaaaaag taggtaattc
     4921 atgaagactt ttcgatcgtg tttatcacag aaaatttagg atcaagtctt accttttttt
     4981 gaaatgatgt agaatccatg agcagaaatc aagaaggcgg ccaatgacat ctttgttgca
     5041 aagaccaggt tccatggtgt ttgagggttt ggatacggaa tattaatgct atccaaatta
     5101 atgcttccgc ctaaggcgtt gagcgttatc atagaactcc atacgacaaa attgtagaca
     5161 aattcataca gtgaaactac tactattgcc aaaacgatta tctggagtat tgagcggaga
     5221 gccggtgaaa cctcctttac tttgtcagca cctaatttgg taacacagta ccatgctata
     5281 actgaaacaa tcataaggta ggtaatcagc tttgaaagtc ctttgaatgg aaattctgtt
     5341 tttactaaaa tctctcctat cacaattttc ccagttgcag catactcaac tatgctttga
     5401 tataatgcat aaaatgtaat cgtggccata aagattgcgg atatatagaa aacaataagg
     5461 tatacagttc tagcagttat ccttctttca attgaatagt acatgatggg agttgtaata
     5521 tttgacaaat gctatcaaat ataaaattat acttctaatc gagtggatca tgatactcac
     5581 ccaccacttg taagtatttc attcaagccc atacacaaca gattcatttg ttaaagccgg
     5641 aagataacat gtaggaaaca gttccgcact aaatacatat tcagatcatt catctacatc
     5701 agtaaatgcg tgtaataata tgctcacacg aagcagatat tgacggtata tattctgctt
     5761 ccgttgcctt gatgaagttt cccagggcta atctttcgtt ctataacaat ggattggata
     5821 attttaaaaa aatgtttgat tatataaaaa atgaatccaa gaagtcagcc acaggccttg
     5881 tggttatttc tgatctcggt ataaatgacg ataaagtatc tgcattgtgc gtggactcaa
     5941 tacaatatct gaaaaagaga caatggtcta ttatttgggt tgatcatcat ccctggcaaa
     6001 aaaaatcgtt aatgtcaatt agaaagttgt gtaaattgtt tcataattca tctggaaaaa
     6061 aatgtgctac cgaaatcatg tatgaaaaat tcatgtacaa taacaagagt gctgagcagt
     6121 taaagatgat agctcacagc tcggacttta tgaccgatat caaaagacat gattccaggg
     6181 tctctgaatt aatccatttt tacagaaata gtgcaaattc tagacaaaaa cttgactttc
     6241 tggcacaaaa agcttcgaac ggaatattgt gggattcaga tatgcaagag gattatgtaa
     6301 agttcctaaa agttgcggat tttcaaaaaa gagaatcact gaagacgcta acaataaaga
     6361 aaattttgtc atttgacgtg gcctttgtgt ttatataccc ctacgttcag gcgagccttt
     6421 tttctcatga gctattctcg aacttgaagg ttgacctcgt catgctcatt aatcgccatg
     6481 gaaatgttag cataagaagg aattcagaca gactttcatg tagcaagata gcagcttatc
     6541 tagttgaagg agggggacat gaatttgcat caggcgggat gttgaagagt aatccgaaag
     6601 actttaccgc ctgcataaaa gagatgcaag aggcagtagt caagtcccta aaatgatatt
     6661 ccatatttac agcaaatcat atggtacata ctgcttgatt tagatgcagc tggaatttac
     6721 aagaaaacaa ataaatttca attcacataa tgataattgt ggctagcgaa aatacgatag
     6781 gtagtgtaat ttacgaatgt atgagatgcg gtactccggt ttctaatgaa gagctttcca
     6841 agttacctga aataaagtgc atatgtggat ttagagtatt tcgaaaggca agacaaccaa
     6901 tagtaaagca actaaaggcg gtttagtgtc gaattaggaa tttccgtcat atcgaccatc
     6961 cgagtctact taacgcttat ttgttagaat tgaggttgat aataacatga agataatctg
     7021 ccccgattgt aagaagcccg ctgaactttc agatgatttt agctttgtga aatgtcaatt
     7081 ttgtaattta gaaatgactt atggggaata tgtaaagtac gtagcatata gagatgtaag
     7141 atatagagac attctgagtg attataagaa gtaaaatacc aaagatggta actttaagta
     7201 atttagattt accccctcta atgttgacaa tcacctttat actaccttaa actcaatact
     7261 ttacatggta aggtgaaaat ttataattgt atattccaac ttctagtttg gtattatcta
     7321 tttttttatc atggtcgaaa ctatagatag tacatctcgg tcctttattt gatagtcacc
     7381 aggtaacctc aagccatttc tgacgtctac ggcatataca atgcctttgg acaattcggt
     7441 atgtatatca cctgcaagat cctgtacgga cgaaccattt ttcattagaa aggcatcagg
     7501 aagtacgtta cccttcttat cagacaattt atttggatct gaaactggat atacgacatt
     7561 catatttaat aacttgaaaa cagcgatgtt taatgcaaac tgtacaccag ttctaagata
     7621 ttcacccaat acatccttcc tgataaaatt gagtgcccac ttctgtttct cattgagtaa
     7681 ggtgttttcg taaatatcaa atatttcatc tccgggtgaa tattttatca aacctctatt
     7741 ctgggctctc ctcagagtaa gttcagcatc ggcacttgag ggaattacaa acatatgttt
     7801 attgtgttca cgaagtctct tgaaattctc cgcggcaggt ggtagatcta ttttatttgc
     7861 aactattagc gaaggcttcg atatctctct cagagtagaa ataaatcttc tactctcatc
     7921 agaatctaat tcatgtatgt tcctatcagt tagattattt tcattgatag attttcttac
     7981 gtgccattcc tttactccta ttccaccaaa aatttcagtg acggcacggg atgtgtccat
     8041 gccggtattt gtcatccttg aaatcttttc tcgattccct tcaaataatt tgaggtacca
     8101 taaaactagt tcttcttcaa tatccgatac atctgcaatt gggtcacctg ctccggcctc
     8161 tgctattttt ccagatgcat caatactacc agatgcatca acaatgtgga gcaatacatc
     8221 agattgtgca gcaacggaca agaactgatt accaagaccc ttaccttccc acgcaccttt
     8281 tatgagacca gggaggtcta tcaactctac aggaataaat ctccagccat ccttacataa
     8341 tgaattccga gggttgtctt ccactccaaa ttctttgtgt acacacag
//
LOCUS       DASUMD010000106         2183 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1240243, whole genome shotgun sequence.
ACCESSION   DASUMD010000106 DASUMD010000000
VERSION     DASUMD010000106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2183)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2183)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2183
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1240243"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(179..892)
                     /locus_tag="VFX26_02965"
     CDS             complement(179..892)
                     /locus_tag="VFX26_02965"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX5573468.1"
                     /translation="MSVTYNFSNKVVLITGGTGALGRTLVKKFIDSGAITISTFLNEK
                     EAEKLKTANPKVEMIELDIGKEEQILKMIPILVERFGTINILVNVVGGYLGGKSITEL
                     SGTDWDKMMNLNLKSAFFISKHVIPIMKSGDGGNVVHISSRTGLKSEGYDSAYAASKA
                     ALIRFVESAAYEFKEHNININCILPTTIDTEANRKAMPKADFTKWLSAQDLANVVLFL
                     CSPSSRVINGSAIPTYGLS"
     gene            complement(1141..1213)
                     /locus_tag="VFX26_02970"
     tRNA            complement(1141..1213)
                     /locus_tag="VFX26_02970"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1178..1180),aa:Ala,seq:cgc)
     gene            1400..1825
                     /gene="msrB"
                     /locus_tag="VFX26_02975"
     CDS             1400..1825
                     /gene="msrB"
                     /locus_tag="VFX26_02975"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033743 - peptide-methionine (R)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HEX5573469.1"
                     /translation="MFQDDNKVQDMTDEDWKNKLTPEQYEVCRNKATEMPFSGKYYYS
                     KDKGVYKCVCCGNELFKSDTKFDSGTGWPSFFEPIKQDNVEYHSDNSFGMERIEITCK
                     KCGSHLGHVFDDGPHPTTKRYCINSVSLRLVKDNNDSEE"
     gene            complement(1890..2072)
                     /locus_tag="VFX26_02980"
     CDS             complement(1890..2072)
                     /locus_tag="VFX26_02980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573470.1"
                     /translation="MDASKRQLTLCNRENGKITRYPENLRKLDNGVEHYFVEVTCSDG
                     IQYGLQAYGEEAISLY"
BASE COUNT          647 a          402 c          385 g          749 t
ORIGIN      
        1 taacatctaa cgataaatta tctgaataat cgtacgtggg ttcaagctct attgatctta
       61 acgatactta tctagatgac attattatgt tattcacctt tgatttaatg gtcataaatt
      121 tgatcttagt ctttgatcac cagtcaatca tgctctagct ggccacaact ttgttatttt
      181 atgataatcc gtaagttgga atagctgacc cgttaatcac ccgagagcta ggagaacaca
      241 ggaataatac cacattagct agatcctgtg ccgataacca cttggtgaag tccgcttttg
      301 gcattgcttt tcggtttgcc tcggtgtcaa ttgtggtagg caaaatgcaa tttatgttaa
      361 tattatgttc cttgaattcg tatgccgctg attctacaaa tcgtatcaag gcggcttttg
      421 aagcagcgta agcagagtca tatccttctg attttagtcc tgtccttgat gagatatgga
      481 caacatttcc accatcccca gatttcatga tcgggattac gtgcttgctt ataaaaaagg
      541 cagactttag atttagattc atcattttat cccaatcggt tccgctcagt tctgtgatgc
      601 ttttaccgcc tagataacct ccaaccacgt taaccagtat gtttatagta ccaaatcttt
      661 caaccaatat cggtatcatt ttaagtatct gttcttcctt tcctatatcc aattcaatca
      721 tttcaacttt aggattagca gtttttagtt tctctgcttc cttctcatta aggaaagtag
      781 agatggttat ggcaccagaa tctataaatt tctttaccaa tgttcttcct agagctccgg
      841 ttcctcctgt gattaataca accttatttg aaaaattgta tgttacactc atttgtcact
      901 tgaattatgc atgatcatat tagtatatat cgcattacta aaattgtgat ccatctagtt
      961 ttactgtaga tatgtcatct tagaattcta gagttggtta ttgtcacaca tactatgaag
     1021 tcaattttga atagaaaaac aattcaggga acaagatttg agcattcttg gaaattgacc
     1081 atttgtcttg attagtgaaa ttattctgct ttccctctaa ttacgacgct aaaacgggta
     1141 tggactgggt gggatttgaa cccacgacct tttgcttgcg aagcaaacat tcgtaccact
     1201 gaactaccag ccctcagact gatgatctaa atccctgata taaaatgtca cagttatttt
     1261 tatcagtttg aatagaattg tgttggtgct acattgactt agaatacgcg agcatgatgg
     1321 tataatgaat tgccattcta atgagctgtc tagccggaaa tggctattat tttttatacc
     1381 atgtttgtta agaaataata tgtttcaaga tgacaacaaa gtccaagata tgactgatga
     1441 agattggaaa aataaactca caccagaaca atatgaggta tgtcggaata aggctacgga
     1501 aatgcccttt tcaggaaagt attattattc caaggataaa ggtgtttaca aatgtgtttg
     1561 ttgtgggaat gaattattca aatcagacac gaaatttgat tcaggaacag gctggccaag
     1621 tttctttgaa ccaattaagc aagacaatgt agaatatcat tcagataata gttttggaat
     1681 ggagaggatt gagataacgt gcaaaaaatg tgggtcgcat cttggtcatg tatttgatga
     1741 tggtccgcac cctactacca aacgttattg tataaattct gtatctctaa gattagtaaa
     1801 agacaacaat gacagtgagg aatgataaaa agcatgaaaa tttttaattc gtagtgtcag
     1861 gtattctttc caatagtttt cattgtttcc tagtataatg atattgcctc ctccccatag
     1921 gcttgtaatc catattggat tccatcactg caagtcactt ctacaaagta atgttccaca
     1981 ccattatcca attttctcag attttcagga tatcgcgtaa tttttccatt ttccctatta
     2041 caaagcgtta attgtcgttt cgatgcgtcc atattacacc aatggattta gatatcaacc
     2101 acacttgatc cttatttgag gatagtgtgt gaagatccta gatataccgt tctcttttct
     2161 tttctcctca aggtgtttag ctt
//
LOCUS       DASUMD010000107         3492 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_24100, whole genome shotgun sequence.
ACCESSION   DASUMD010000107 DASUMD010000000
VERSION     DASUMD010000107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3492)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3492)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3492
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_24100"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(370..1560)
                     /locus_tag="VFX26_02985"
     CDS             complement(370..1560)
                     /locus_tag="VFX26_02985"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase family glycosylhydrolase"
                     /protein_id="HEX5573471.1"
                     /translation="MKLSVLGISFVLLLILNISLITNLGNSQDAKSQPLIGVNLLGYY
                     TSLPQTRDFKNPFPDNYYDQSFKIIKDGGMNHVRYVYYWESFVKNPVAFINELKFAAT
                     LADKYGLKIIYDNHQFHTSSWLNPQRGTGFPHFLFQNNSEYAYGSGGSPQYPSAAAWW
                     THWWNREITDANGTDGWSLQSEFLKKIVSTVDSHPSTAGYEILSEPQVHDVDQWDKIG
                     KYNTFMTDELRNVTNKNIVFSMSIPVDLESNIGVNATNLAKMTPVNKTNTIFKFSIYG
                     LPSPGSYQEERLNTFLSTGNLSGVPVYIGEWNNVARDKVINEEGDFVYEIDPEASDIT
                     PEDTTAILKKFNEIDPYGWAFWYWNFRPHRVENFNLVTSDANGNLIPTKYFDILKNAV
                     QSVK"
     gene            complement(1618..2502)
                     /locus_tag="VFX26_02990"
     CDS             complement(1618..2502)
                     /locus_tag="VFX26_02990"
                     /inference="COORDINATES: protein motif:HMM:TIGR03026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003979 - UDP-glucose 6-dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HEX5573472.1"
                     /translation="MSIVGSGVVGSATGQGFHKLGHEVIFYDISKEKLRTLKNNGYKV
                     ADDLGDALSQTDISFVCVNTPTHNSQQDLSQILSALYQLANYLNSSDKRHLLVFRSTM
                     LPGTMRSVVLNYLEKNCTKKRGIDYEIAYNPEFLRQISALDDFFSPDRAIIGQESDNE
                     ISKLLVDLYKPLTKNIITTSFEAAELIKYASNCFLSLKISFFNEIGMICKHLGIDDKV
                     VSLGVSLDKRIGKYGTEFGRPFDGMCLPKDTQALASFIKQNRIEPDLLEIVLNINKKI
                     EDLTTTKQLVPGARETHS"
     gene            2681..>3492
                     /locus_tag="VFX26_02995"
     CDS             2681..>3492
                     /locus_tag="VFX26_02995"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX5573473.1"
                     /translation="MNSYKHQALQKHGGIFGNIIFDLILIGFVVSLVMSPFWFDINDI
                     LYQLSGLQNYISRNFIPSSLYDYWLIIPLGIIGIWRWTVWFIKKIVATFYYPIKPESS
                     NGTSKAIDAPTVSVIIPVYNEDRKIFRRSLESWWKNKPAEIIAIIDKSDTGCVAEFKE
                     FQQGKSNIKLIVTSKPGKRAALADGISESKGQILALTDSDTMWDSNFLENALRPLQVD
                     PKIGGVTPRFHPIEIRTIWQKMTDIFWDMRNYLDMPAQTAGGKALSCLSGKTA"
BASE COUNT         1064 a          659 c          612 g         1157 t
ORIGIN      
        1 gatatctatc ctgtggttga agaccttggc cagtttctgt ggaaattgct tttctcaggt
       61 aatggccctc atccacgtgt atcgacggaa accctgtagg attccataga tgagtgtacg
      121 cagaaagaac aagtggaata agaataaata tccaagatat ctgtctgtct tataattgta
      181 gtcgcagatt caattatctt ttctgtccaa taattatgat atttatacat gaattaaacc
      241 ttgtggagat agttgaattt gcaatggaat tatagaactt tatcttagtg tcccgttacc
      301 atcaagaaga ggctttatcc tcattgaaga ctgatactat ttagctgcct tgcttagatt
      361 tgtttcggcc tactttacag attgaacagc atttttgagg atatcaaagt attttgtggg
      421 gatcagattg ccattagcat cacttgtcac taaattaaag ttctccactc tatgaggtct
      481 aaaattccaa taccaaaaag cccacccata cggatctatt tcattaaatt tctttaatat
      541 agctgtggta tcttctgggg tgatatcact agcctccggg tctatttcat agacaaagtc
      601 tccttcttcg tttattactt tatccctggc tacattgttc cattctccaa tatacactgg
      661 aactccggat aggttgccag tcgataagaa cgtattcaat ctttcttctt ggtagctacc
      721 cggagatggc agtccataaa tactaaattt gaatattgta tttgttttat ttacaggtgt
      781 catttttgct agatttgtcg catttactcc aatgttactc tcaagatcaa caggaatgct
      841 catgctaaat actatattct tattagttac atttctcagt tcatctgtca taaaggtatt
      901 gtattttcca attttatccc actggtccac gtcatgtacc tgcggttcac tcaatatttc
      961 atatccagca gtactgggat gactgtcaac cgtactgact atttttttca agaactcaga
     1021 ctgtaagctc catccatcag taccatttgc atcggtaatc tctctattcc accagtgagt
     1081 ccaccatgcc gctgctgatg gatactgagg acttcctcca ctaccgtagg catactctga
     1141 attattttga aacaagaagt gtgggaatcc tgttcctctt tgaggattaa gccatgatga
     1201 agtatgaaac tgatgattat cgtaaattat ttttaaccca tatttgtcag caagtgtagc
     1261 tgcaaatttc agttcattta tgaatgctac aggattcttc acaaaagatt cccagtaata
     1321 cacatatctc acgtgattca ttcccccatc tttaattatc ttaaaactct gatcatagta
     1381 gttatcagga aaaggattct tgaagtctcg tgtttggggt aaactggtat agtaacctaa
     1441 caagtttact ccaatgagtg gttgggattt tgcatcttgc gagttgccta aattagttat
     1501 tagcgaaata tttagaatta ataaaagaac aaatgaaatt ccaagaacag acaatttcat
     1561 tactaaaata aaaatttaac tcccaatata aattattgaa gagaaaattt tctggcttta
     1621 agaatgagtt tctcttgcac ccggaactag ttgttttgtt gttgtcaggt cttcaatttt
     1681 cttgttaata tttaatacaa tttcaagcaa gtcaggttca atcctgtttt gttttatgaa
     1741 tgaagctaat gcctgagtgt ctttaggcag acacattccg tcaaatggtc ttccaaattc
     1801 ggtaccatat ttgccgattc ttttatccaa agacacacct aaactcacta ccttgtcatc
     1861 tattcccaaa tgtttgcata tcatgcctat ttcgttaaag aatgaaatct ttaatgacaa
     1921 aaagcaattt gatgcatact tgataagctc tgcagcctca aatgaagtag tgattatatt
     1981 ttttgtcaaa ggcttgtata agtcgactaa caattttgat atttcattat cactttcctg
     2041 tcctattatt gcgcggtctg gactaaagaa atcatccaat gcagaaattt gtctcagaaa
     2101 ttctggattg taggcaatct catagtcaat tccccttttt ttggtgcagt tcttttcgag
     2161 atagttcagc actacgctgc gcatagttcc aggcaacatt gtgctcctaa aaaccagtaa
     2221 atgacgttta tcggaagaat ttagatagtt tgcaagttga tacagtgcag aaagtatttg
     2281 ggaaagatct tgttgggaat tatgagtcgg agtattcaca catacaaatg aaatatctgt
     2341 ttgtgataag gcatcaccaa gatcatctgc taccttgtat ccattattct ttagagttct
     2401 gagcttttcc tttgaaatgt cataaaaaat tacttcatga cctagcttgt gaaatccctg
     2461 gcccgttgca ctgcctacta cacccgaacc aacaatgctt atcttactcg tgcaaaatcc
     2521 ctctttatta taggggggtt ataattaatc atatttatat aattcctttt cattttcaag
     2581 taagaaatat agtaagattt agcaataacc atcttacgtc actaacttct atctcgcata
     2641 aaagttacta ataaataata tggaaatgga gattaaacca gtgaattcct acaagcacca
     2701 agcgcttcaa aagcacggcg gaatattcgg caacattatt tttgacctaa tacttattgg
     2761 atttgtagtt tcacttgtta tgtcaccatt ttggttcgac ataaatgata tcctttacca
     2821 actcagcggc ctccaaaatt atatatctag aaatttcatt ccaagttcat tatacgatta
     2881 ctggctaatc atccctctgg ggataatcgg catttggaga tggacagtat ggttcatcaa
     2941 gaaaatagtt gcaacttttt attacccaat aaaaccggaa tcaagcaatg gtacttcaaa
     3001 agccatagat gctcctaccg tatcggtaat tataccagtt tacaatgaag accggaaaat
     3061 ttttaggcga tctttggaat cgtggtggaa aaataagcct gcagagataa ttgcaattat
     3121 tgataaatct gatacaggat gcgtagctga attcaaggaa tttcaacaag gcaagagtaa
     3181 tattaagttg atagtgactt caaaacctgg taagagagcc gccctggctg atggtatatc
     3241 agaatcaaaa ggacagattc ttgctttaac agacagtgat acaatgtggg attcaaattt
     3301 cttggaaaat gcattgcggc cattgcaggt tgatccaaaa attggaggag tcactcctag
     3361 atttcatcct attgaaataa gaacaatctg gcaaaagatg accgatatct tttgggatat
     3421 gcgaaattat cttgatatgc cagcacagac agcaggagga aaagctcttt cctgtttgag
     3481 tggaaaaact gc
//
LOCUS       DASUMD010000108         2930 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1461885, whole genome shotgun sequence.
ACCESSION   DASUMD010000108 DASUMD010000000
VERSION     DASUMD010000108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2930)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2930)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2930
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1461885"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..497)
                     /locus_tag="VFX26_03000"
     CDS             complement(<1..497)
                     /locus_tag="VFX26_03000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003951 - NAD+ kinase activity [Evidence
                     IEA];
                     GO_process: GO:0006741 - NADP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+)/NADH kinase"
                     /protein_id="HEX5573474.1"
                     /translation="MKVAISSISSRDDSLISKIKKILDDENIYSEIIKRSDKMTTSNV
                     DIVITAGGDRAILDYSHYVNEFSVPVLGIYESDSTGFLGQIDVSDLKKSIGRIKKGDY
                     EIDDVCRLSVNVDGKEVEPVLNDISLFPRKSATLMEYILKINGNDIWHDNSDGVIIST
                     PIGSTA"
     gene            complement(552..1466)
                     /locus_tag="VFX26_03005"
     CDS             complement(552..1466)
                     /locus_tag="VFX26_03005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573475.1"
                     /translation="MKAAILSNIVVDEIVSRDLESSKSLGGPAAYCGVTARKFGFDTT
                     LFTHFGKDLDPQYLDYLKNQGISFNGPHYSNLPTTRFVLKNFETDRELTLESKCVALN
                     IEEIKNVKANCWIISPVFDEVPLDILQYLSSTKMEGNQFVMLDPQGYTRAVDQEGRVS
                     IRKKMDIPIRKVNGIKLDSQEISCFTNGLQGMEGMKKIRSHYEIDYVLHTQDQIIHLL
                     EKERHYWLNVPKFDTPDSTGLGDIITSSFACTIVKEKDSIWAFCFAVGALIAAIQTSE
                     IGIKKIPSKSAIEENASYYYNTMNFEII"
     gene            1559..1846
                     /locus_tag="VFX26_03010"
     CDS             1559..1846
                     /locus_tag="VFX26_03010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S26e"
                     /protein_id="HEX5573476.1"
                     /translation="MPKKRTSRGRTKGGKGSSGTVHCSQCGAMVPRDKAKKVTGRITL
                     VEPTLAKELRAQGAYIAPVTDVKFYCVSCAVHRGIVKVRSEMERRRTGRLG"
     gene            complement(1861..2460)
                     /locus_tag="VFX26_03015"
     CDS             complement(1861..2460)
                     /locus_tag="VFX26_03015"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0016780 - phosphotransferase activity, for
                     other substituted phosphate groups [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HEX5573477.1"
                     /translation="MLNRFREKIIPITTLIGNNFGSLGLSPTFWSMIGFGFAILSSIF
                     FGLTNFLNQQGIEFPSQIFASILLLISGFFDIVDGSVARVMKKSTTKGAFLDSNFDKV
                     SEALIFIGIAIGGLSNPILAMIALSTSILVSYLRAKAESLGIDLKGVGIGERAERLLI
                     LSICGFIPISESIQWGVIIIILISGFSFLQRFRYVLKRI"
     gene            complement(2612..>2930)
                     /locus_tag="VFX26_03020"
     CDS             complement(2612..>2930)
                     /locus_tag="VFX26_03020"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: protein motif:HMM:NF012630.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031012 - extracellular matrix [Evidence
                     IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="matrixin family metalloprotease"
                     /protein_id="HEX5573478.1"
                     /translation="NVLDDEGFIKRVKVRISVNFNEEQIEEDTLDLVLKHEIGHVLGL
                     GHSNFHDLMNPIVNYQNKIITKCEIDAVHLANNWKLVENLQQPKLPKLPFEKTVVCGS
                     EEL"
BASE COUNT          936 a          530 c          490 g          974 t
ORIGIN      
        1 gctgtcgacc caattggtgt agaaatgatt acaccatcac tgttatcatg ccagatatca
       61 tttccattaa tctttaatat atattccatg agagtagcac tttttcttgg aaagagagaa
      121 atatcattta agactggttc aacttctttt ccatcaacat taacagaaag tcggcataca
      181 tcatctattt cgtagtcacc tttttttatt ctgcctatag atttttttaa atcactcacg
      241 tcaatttgtc ccaaaaatcc tgttgaatcc gattcatata ttcccagtac gggtacagag
      301 aattcattaa catagtggga ataatcaagt atcgcacgat ctccaccagc agtaatcaca
      361 atatctacat ttgaagttgt cattttgtct gatcttttaa ttatctctga ataaatattt
      421 tcatcgtcta aaattttctt gattttgctt attagactat cgtccctgga gcttatactt
      481 gagatagcca ctttcattgt aactattaaa agtcaacaga cactcaaatt taaacctgat
      541 ttatgacatg tctaaattat ttcaaaattc attgtattgt aataatatga agcgttttct
      601 tctattgcgg atttggaggg tattttttta attccaatct cacttgtttg gattgccgca
      661 attaacgccc ccactgcaaa acaaaatgcc caaatagaat ctttttcttt aacaatagtg
      721 catgcaaaag aagaggtgat aatatcacct agtcctgttg aatcaggcgt atcgaattta
      781 ggtacgttta accaatagtg tctttccttt tcaagaagat gaataatctg atcctgtgtg
      841 tgcagtacat aatcgatttc ataatgggag cgaatttttt tcatcccttc cataccttga
      901 agaccgtttg taaagcagga gatttcctgg ctatctagct ttattccatt tactttacgg
      961 atgggaatat ccattttttt tcttatagat actctccctt cttggtcaac agctcttgtg
     1021 taaccctgtg ggtccaacat tacaaactga tttccttcca tttttgttga agataaatac
     1081 tgcaatatat ccagaggtac ttcatcaaaa actggactaa ttatccagca atttgctttt
     1141 acatttttta tttcttctat atttaatgcg acacattttg actcgagagt taattcacga
     1201 tcagtttcaa aattcttcaa tacaaatcta gttgttggaa gattcgagta atggggacca
     1261 ttaaatgaaa ttccctgatt tttcagataa tcaagatatt gtgggtcaag atcttttcca
     1321 aaatgagtaa agagcgttgt atcaaatcca aatttccttg cagttacgcc acaataagct
     1381 gcaggtccac ctaagctctt acttgactct agatctctcg acacaatctc gtctacgact
     1441 atgttggata gtatagcagc cttcattgct gaatatcatc actaaatcta ttgctttgat
     1501 aaatgttgac ataagcagca tcagaagatt taaaagaaga agagatagta attgtataat
     1561 gccgaagaaa aggacaagca gaggacgaac aaaaggtggg aaaggaagtt caggaacagt
     1621 tcattgtagc cagtgcgggg ccatggtacc aagagataag gcaaaaaaag ttactggcag
     1681 aattacatta gtagaaccga ctttggcaaa agaattaaga gcgcaaggag catatattgc
     1741 accggttacg gatgtcaaat tttattgtgt ttcctgtgct gtgcatagag gaatagtaaa
     1801 agtaagatca gaaatggaac gtagaaggac aggaaggctc ggataagata ttttatagcg
     1861 ttatatcctt tttagaacat acctaaatct ctgaagaaaa gagaaacctg agatcaagat
     1921 aataattata actccccatt gaattgattc tgaaattgga ataaagccgc aaattgataa
     1981 gattagcaat ctttctgctc tttcccctat ccctacacct tttagatcta taccaagtga
     2041 ctccgctttg gctcggagat aactaactaa gatagaagtc gataaagcaa tcatagctaa
     2101 aatcggattc gataaaccac cgattgctat ccctatgaaa attagagcct cagaaacttt
     2161 gtcaaaatta gaatccagaa atgcaccttt ggtggtagat ttcttcatta cgcgagctac
     2221 acttccatct acaatatcaa aaaaaccaga aatcaagaga aggatacttg caaatatttg
     2281 tgagggaaac tcgatgcctt gttggttcaa aaaatttgta agaccaaaga atatgcttga
     2341 taggattgca aagccaaatc caatcatact ccagaaggtt ggagataaac caagcgaacc
     2401 gaaattatta cctattagtg ttgtaatagg aattattttt tctctgaacc tattaagcaa
     2461 atattatctt attatttata catctaacaa atattctttt ttatcccaat attgcttaca
     2521 atgattcaaa ctgtggatat gaccgctgta actcaggctt gaattttatg aaaaatgatt
     2581 tggttagttt cgttcaagga ttagggattg gttacaattc ttccgaacca caaacaacag
     2641 ttttttcaaa tggtagtttt ggcaattttg gctgttgtag gttttctact aatttccagt
     2701 tgtttgctag atgtactgca tcaatctcac atttggtaat gatcttattt tgatagttga
     2761 ctattgggtt cattagatca tgaaagtttg aatgccctag tccaagaaca tgtcctattt
     2821 catgttttaa tacaagatct agagtatctt cctctatctg ttcttcattg aaatttacag
     2881 atattcttac ttttaccctt tttatgaaac cttcgtcatc cagaacgtta
//
LOCUS       DASUMD010000109         2624 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_687738, whole genome shotgun sequence.
ACCESSION   DASUMD010000109 DASUMD010000000
VERSION     DASUMD010000109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2624)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2624)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2624
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_687738"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(2..733)
                     /locus_tag="VFX26_03025"
     CDS             complement(2..733)
                     /locus_tag="VFX26_03025"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012345.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase"
                     /protein_id="HEX5573479.1"
                     /translation="MQLKDVILSIQNTEIETLGNFKELFESDGYKIETINVKKDKIPQ
                     EPDKYAGIVILGGYMSVYETLPYLNEEQDLIRNANRLQVPLLGICLGSQLIAQALGGK
                     VHKGEQKEIGWFDVIINNEGKNDIFKGIANENIKVFQWHGDTFKLPNSAILLASSNLY
                     PQAFRLGHSIGILFHLEVTSQLIHNWTQNYGSEMKEVGISADAILDGKSSEFESLANS
                     CKVVYANFSKMIAAYRGGKRNSVMN"
     gene            complement(837..1421)
                     /locus_tag="VFX26_03030"
     CDS             complement(837..1421)
                     /locus_tag="VFX26_03030"
                     /EC_number="3.2.2.20"
                     /inference="COORDINATES: protein motif:HMM:NF015319.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008725 - DNA-3-methyladenine glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HEX5573480.1"
                     /translation="MHSIIEKNPRCDWAKEQIEIDYHDNEWGVPLHNDRKLFEFLVLE
                     AMQAGLSWRIILNKRQEFRKAFDNFQVEKIANYNIVKINELCSNPLIIRNKKKIEATI
                     INANAFVRIQKEFGSFDTYIWNFVRYKPIQNSWKTYKDVPSTSQESDLICKDLRNRGF
                     RFVGSKICYSMMQAIGMVNDHTISCFRYMELRKK"
     gene            complement(1549..>2624)
                     /locus_tag="VFX26_03035"
     CDS             complement(1549..>2624)
                     /locus_tag="VFX26_03035"
                     /inference="COORDINATES: protein motif:HMM:NF013077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEX5573481.1"
                     /translation="LTSIAWRNAWKYQARSYRHWFWDSGVITANMIATAMSFGLDTKL
                     ITGFVDKVVNEMLCLEEKKEASIVLAPIGIGLSQEEPKQIEYPSRFVPDIVPISEGKE
                     VDYYQIWKLHNSSSLNSSDEVREWTHSIARMQEIRETEDVNVKIQSKPIDPRSIISQS
                     LSDVILLRGSTRKFSRESITFTQLSNILSSLTIPTHSDFGDKKSMIDIYFIANDVTNM
                     QKGAYFFNQKDNSIDLLKANVQRDVSGYLCLEQSLFSDASVVFYIMTNLGLIVDILGN
                     RGYRSCQFESGITAGRIYLSAYNQKIGASGSTFYDDAVSEFFSPHAKDKDVMIAVGIG
                     IPDYRSKPGRILAGKFSRDDLLS"
BASE COUNT          799 a          528 c          393 g          904 t
ORIGIN      
        1 atcaattcat cacagaattc ctttttccac ctctataggc agctatcatt ttggagaaat
       61 ttgcgtacac aaccttacag ctattggcca gactttcaaa ttcagaactt ttgccatcta
      121 aaatagcatc tgcacttata ccaacttcct tcatctcact tccataattt tgtgtccaat
      181 tatgaatcag ttgggacgtt acttcaagat gaaacaaaat tccaatggag tgaccaagtc
      241 taaatgcttg tggatacaaa ttggaggagg ccaaaagtat cgctgaattt ggaagtttaa
      301 acgtatctcc atgccattgg aagactttta tattctcatt agctatccct ttgaagatat
      361 cattctttcc ttcattattt attattacgt cgaaccatcc aatctctttc tgctctcctt
      421 tatgcacttt accacctaat gcttgggcaa ttaattgcga gcctagacag attccaagta
      481 gaggaacttg aagacgattg gcatttctaa tcaaatcttg ttcttcattc agatagggta
      541 aggtttcata tacagacata tatcctccca aaatgactat tcctgcatat ttatcaggtt
      601 cttggggaat tttgtctttt ttaacgttta tagtctcgat cttatacccg tcggattcaa
      661 acaattcctt gaaattgccc agtgtctcaa tctctgtatt ttggatagag aggatgacgt
      721 ctttcaattg catgatgtta aattaattca ttatatctac ttattcagga ataacccaaa
      781 attcaatttg tggggttgta cgctaggatt aaatacacat tatgtcaaga aaaaatctat
      841 ttttttctta attccatata tctaaaacaa cttattgtgt gatcattaac cattcctatt
      901 gcttgcatca ttgaataaca tatcttcgat cccacaaatc tgaatcctct atttctaaga
      961 tctttacaaa tcagatcaga ttcttgcgac gtagaaggaa catctttgta ggtcttccat
     1021 gaattttgta taggtttgta tcttacaaag ttccatatat aggtatcaaa actgccaaat
     1081 tctttttgga tcctaacaaa tgcattagca ttaataattg tcgcctctat ctttttttta
     1141 tttctaataa taagtgggtt ggaacaaagt tcattaattt tcacaatatt ataattagcg
     1201 attttttcca cttggaaatt atcaaatgcc tttcgaaact cttgacgctt attgagaata
     1261 atacgccagc ttagacctgc ctgcattgcc tcaagtacta gaaattcaaa taatttccta
     1321 tcattgtgta gcggaactcc ccactcattg tcatgatagt ctatctcaat ctgctctttg
     1381 gcccaatcac acctggggtt cttttctatt atactatgca tttctatcca ctatcatcgt
     1441 tataattcta atcatgccga ccatacggtt ttcatgcaaa taaattcata tcataaattt
     1501 agagattaat ggtacacatt tctttggtta aaaattatta ggattgactc atgataaaag
     1561 gtcatctctg gagaacttgc cagcaagaat tctcccgggt tttgacctat aatctggaat
     1621 gcctatacca acggcgatca tgacatcctt atcctttgca tgaggggaga aaaactcaga
     1681 tacagcatca tcataaaaag tggaccctga agctccaatt ttttgattat aagcagatag
     1741 ataaatcctc ccagctgtga tacctgattc aaattggcat gatctatatc ctctgtttcc
     1801 taatatatcc actattaacc caaggtttgt cataatataa aatactacac ttgcatcact
     1861 gaataaagat tgttctagac acaaatatcc tgatacatct ctctgaacgt tagctttcaa
     1921 gagatcaatt gaattatcct tttgattaaa aaaatacgct cccttttgca tgttagtcac
     1981 atcattggca ataaaataga tgtctatcat tgatttttta tcaccaaagt cggaatgagt
     2041 aggtatcgtc aaactagaaa gtatgtttga gagctgtgta aatgtaattg actctcttga
     2101 aaattttctg gtggatcccc ttaaaagtat gacatcagat agcgattgtg aaatgatcga
     2161 tctaggatct atcggttttg actgtatctt cacattaacg tcttctgttt ctctaatttc
     2221 ttgcatccta gctatagaat gagtccactc gcgcacttca tcacttgaat ttaatgatga
     2281 tgaattatgt aacttccaaa tctgataata atcaacttct ttcccctctg atattggaac
     2341 gatatctgga acaaatctag aaggatattc aatttgctta ggttcttcct gggacaaccc
     2401 aatcccaatt ggtgccaaaa ctattgaagc ttcctttttt tcttcaagac ataacatttc
     2461 atttacaact ttatctacaa atccagtaat caatttagta tccaaaccaa atgacatagc
     2521 tgtggcaatc atgttcgctg taattacacc agaatcccag aaccaatgtc tgtaagaacg
     2581 cgcttgatat ttccaggcat ttcgccacgc gatggacgta agta
//
LOCUS       DASUMD010000110         7147 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1241746, whole genome shotgun sequence.
ACCESSION   DASUMD010000110 DASUMD010000000
VERSION     DASUMD010000110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7147
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1241746"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..252)
                     /locus_tag="VFX26_03040"
     CDS             complement(<1..252)
                     /locus_tag="VFX26_03040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573482.1"
                     /translation="MYSQTFSVPHAVREVIGSNTLFFQALSTGIANYTALAQKIKPEV
                     EKLTKSEVNVNTLVVAIKRFADSLDGTDYEFHPIFDGVRM"
     gene            437..721
                     /locus_tag="VFX26_03045"
     CDS             437..721
                     /locus_tag="VFX26_03045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573483.1"
                     /translation="MTKREFIIDNGREKIQEFGHLHKNVAVKYLMKRRRSVLMTKNLE
                     KVESLFSDLPRKISIIGKQITHSYEVNWERQGVTEFEGSRFVFTLKSLDN"
     gene            965..1177
                     /locus_tag="VFX26_03050"
     CDS             965..1177
                     /locus_tag="VFX26_03050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573484.1"
                     /translation="MKYPLRNIILEKIKEVGNLSDNELLSNLEKEGVQITVADLNKTL
                     LDLEIFGLVRVSWVSKDKRRIELVTR"
     gene            1245..2006
                     /locus_tag="VFX26_03055"
     CDS             1245..2006
                     /locus_tag="VFX26_03055"
                     /inference="COORDINATES: protein motif:HMM:NF013213.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEX5573485.1"
                     /translation="MLYDSHIHLTNTEYDNFLPSILVTLKGMSIKACSVAVNTSTSLK
                     ALRLFGEKDVHNIVYNFLGIHPQYADENTSQFEEMVSSNIHNINGIGEIGLDPTYYNQ
                     DKNTKVLQDQVFTKMLTIAETYDKPISVHSRQSLDEILNLLSTYHLKKVCLHWFDGSP
                     QQLEKALDMGLYVSFGPSLIYSKKKQGLLKLTDQGKLLIETDGPVRYPSCFKNVITLP
                     TSVLMSVVRSMSEVLCLSPKNVAEKLERNSILFFD"
     gene            2070..2285
                     /locus_tag="VFX26_03060"
     CDS             2070..2285
                     /locus_tag="VFX26_03060"
                     /inference="COORDINATES: protein motif:HMM:NF013029.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17e"
                     /protein_id="HEX5573486.1"
                     /translation="MNRVKKLSTELLNRYPDKFKVDFQQNKKTIDEIAKVRSKELRNQ
                     IAGYIASYINKQSKEQNKKIEQEVEET"
     gene            2385..2555
                     /locus_tag="VFX26_03065"
     CDS             2385..2555
                     /locus_tag="VFX26_03065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573487.1"
                     /translation="MLSNIFSILYQNVTNSKHIDKENLLILINGVDLSISADQKIKSG
                     DIVTIANLIHGG"
     gene            2588..3139
                     /gene="cgi121"
                     /locus_tag="VFX26_03070"
     CDS             2588..3139
                     /gene="cgi121"
                     /locus_tag="VFX26_03070"
                     /inference="COORDINATES: protein motif:HMM:NF011465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KEOPS complex subunit Cgi121"
                     /protein_id="HEX5573488.1"
                     /translation="MKEKTKIISNIPLYEINSVFVAIISTDTLHVTDIGTTIESFRKM
                     FPEVMIQGINPKYIFGKGHIFEVIKIILESNMRKIKIAKRLEMELLLRLICNNQVDKA
                     INIGGIKNNGSGCFILLSENKRLIVYSIRYLRKMFVRQNTWLLNASREKMLYMCKRMK
                     FRHSNFNNKDFLKILIEKAALVS"
     gene            3129..3386
                     /locus_tag="VFX26_03075"
     CDS             3129..3386
                     /locus_tag="VFX26_03075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573489.1"
                     /translation="MFHSRITCNAYLYAYIGKSQHDGYVTVEIPKSVQYTLSIVNNKH
                     NKSKNQAFIHEFNLQITRIAALDEMSLLTPCRKTMLGTDTK"
     gene            3504..3773
                     /locus_tag="VFX26_03080"
     CDS             3504..3773
                     /locus_tag="VFX26_03080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEX5573490.1"
                     /translation="MKYRSRTEIVSMILEAANGSATKTKIMYKAFLSYSQLREYLSVL
                     IENNLLEYLEGSQTYKTTEKGLNLLKMHNEIGELLQSPMRESRIQ"
     gene            complement(3975..4499)
                     /locus_tag="VFX26_03085"
     CDS             complement(3975..4499)
                     /locus_tag="VFX26_03085"
                     /inference="COORDINATES: protein motif:HMM:NF014923.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="THUMP domain-containing protein"
                     /protein_id="HEX5573491.1"
                     /translation="MNFNLLVTTFRYREGDAFDEVLQLLDVLGDKDPSIEISPVSGII
                     LVDTCLDPFQVVENCREMVRNEPWKFRYVLRIIPLEKNCKAELTEIHSVVNQLCRKMD
                     EHETFMIMIEKRHSKLHSNDIISTVASKLDMKVNLDDPNWIILVQIVNRVAGISILRP
                     NQIFSSVKEKISLQ"
     gene            4664..5443
                     /locus_tag="VFX26_03090"
     CDS             4664..5443
                     /locus_tag="VFX26_03090"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEX5573492.1"
                     /translation="MSQINIVENKPALLIDVFNANKTSRVLVISDLHIGKTYWLQNTD
                     IAIDWYHIVKEIEKELSDIVISNKVTSIVLLGDIKNNIYKVEKEDWNLIPNFLHSLSE
                     ICEVYLIPGNHDSRIGLITPEKVHLIGVKGMVIGDILLTHGHTFPSELRSNINKIVMG
                     HIHPRFFRENSVLNGQKIWIFLKVKKESIFPSTKGSLDLILLPSFNKYIYGNGRVKNR
                     KTNSPILKKILRKESIDRCLILSIDGTIIGNENLLSEVFNS"
     gene            complement(5447..>7147)
                     /gene="carB"
                     /locus_tag="VFX26_03095"
     CDS             complement(5447..>7147)
                     /gene="carB"
                     /locus_tag="VFX26_03095"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HEX5573493.1"
                     /translation="LGINPVVKQVDTLAAEWPAKTNYLYLTYGGDKDDIVFRKEKNSV
                     MVLGAGPYRIGSSVEFDWGTVNMVWGLKNNGIKSVSVINCNPETVSTDYDISDRLYFE
                     ELSLERILDIYEKERPKGIVTCVGGQTANNLVPKLGELNVRIIGTDSIHTDMAENREK
                     FSRLLDSLNIKQPPWNKFTDLNGAKTFSQNVGFPVLVRPSYVLSGAAMKVIWNDEQLE
                     RYINEAAQVSPEYPIVISKFFQDSAEVEVDAVCNGKDVIIGALIEHIDNAGIHSGDAM
                     MCIPPWRLNRQTMNTIVDYSNMIARKLEVKGPLNIQYLVKDDEVYVIEANVRASRTTP
                     FVSKIVGINLISLAAKAITNGSLPEGLNEPWLKISGFGIKVPQFSFMQLEGSDIVLGV
                     EMQSTGEVACHGNSFHDALSKAYEAAGYNLPLSGSALITIGGQKNKEKMLSPISLINS
                     MKFNILATEHTAEFIKNNITTNVQEVHKISEPIRKPNIADLLYDKKIDFIINIPSTFT
                     IEKYVGMLDDEYQIRRKAVEMGIPVLTTVESAISFIHCLEWRNNNKPSIKPLSKYHIN
                     "
BASE COUNT         2457 a         1173 c         1182 g         2335 t
ORIGIN      
        1 cattctgact ccgtcaaaaa ttggatgaaa ctcatagtca gtcccatcca gtgaatctgc
       61 aaatcgtttt atggctacca caagggtatt aacatttact tcagactttg ttagcttttc
      121 tacctctggc ttgatttttt gcgctaatgc cgtataattt gctatacccg tacttaaagc
      181 ctgaaaaaat aacgtattag aaccaataac ctctcttact gcatgaggta cagaaaaagt
      241 ttgagaatac atgtatctta tatgtgttgt aaaagtaata aacctttctt acatattcaa
      301 aaagctactt tatgtacgaa aatttacaaa atgttataat ttgtattatg gaatttagat
      361 gcgatcaaat taacccatgt tgttataata gaattgacaa tgactctttt taagtaaatt
      421 aaagttaatg cgcacattga ctaagcgtga atttatcatc gacaacggga gggaaaaaat
      481 tcaggaattc gggcacctcc acaagaatgt tgcagtaaaa tatctaatga agagacgaag
      541 atcagttcta atgacaaaaa atctagaaaa agtagagagt cttttttcgg accttcctag
      601 aaagattagc ataataggca aacagattac tcatagttat gaagtgaact gggagagaca
      661 aggggtaacc gaatttgagg gatcaagatt tgtatttaca ctgaagtcac tggataatta
      721 aatcaaatca aaatacgaat ggtttgcccg attgattatt ttttctatat tgttaatcat
      781 atctttgctt aaactcatgg aagttagagt ccgtcaacag attgcaacct actttcacta
      841 agaacgaaaa tacatttcta tttgttcatc atgattttaa aacttaaatc agttagaaga
      901 gtatttataa tatgtaatta gatcaagtaa ctaaagttat atattctaaa tttggtgaag
      961 acatttgaaa tatccgctaa gaaatattat attagaaaaa ataaaggaag taggaaattt
     1021 gtcagacaat gagctattaa gcaatttaga aaaagaagga gtacaaataa cagtagctga
     1081 tcttaacaaa acgttactcg atttagaaat ttttggattg gtgagagtaa gttgggtatc
     1141 aaaagacaaa agaaggatag aactagttac acgataggct tttttgattc aggtactgtg
     1201 attaattaat aatattatgt aaggacaatt aaaaattgaa tcctgtgtta tacgattctc
     1261 atattcatct taccaatact gaatatgata attttttgcc ttcaatactt gtaactttga
     1321 aaggaatgag tataaaggca tgttcagtag cagtaaacac ttcgacttca ttaaaggcat
     1381 taagactttt tggggaaaag gacgtccata atattgtata taactttcta ggaatccatc
     1441 cccaatatgc agatgagaac acttcacagt tcgaagaaat ggttagctcc aatatccata
     1501 acattaatgg gatcggtgaa attggactag atccgactta ctacaatcag gataaaaata
     1561 ccaaggtctt gcaagaccag gtattcacta agatgttaac tattgcagaa acgtatgata
     1621 aacccatttc agtacattct aggcaatcac ttgatgaaat tctgaattta ttgtctacat
     1681 atcatctaaa aaaagtatgc cttcactggt ttgatggatc tccacagcaa ttagaaaaag
     1741 ctcttgatat gggtttatat gtttcattcg gtccatcttt aatttattcc aagaaaaaac
     1801 agggtttgct caagttaaca gatcaaggga agttactaat tgaaactgat gggccagtaa
     1861 gatatccatc atgctttaag aatgtaatta cactgccaac ttcggtcctc atgagtgtcg
     1921 taagaagtat gtcggaagtt ctttgtttgt caccaaaaaa tgttgcagaa aaacttgaaa
     1981 ggaactctat tttatttttt gattagaacc tcaatatgat ttctttaata aggaaggtat
     2041 aaaatagcct atatgaatag tctgacatat tgaatagagt taaaaaactt tcgacagagc
     2101 tcttaaaccg atatccagac aaatttaaag ttgattttca gcaaaataag aaaacaatag
     2161 acgaaattgc aaaggttaga tcaaaagaat tgcgaaatca aatagctggc tatattgctt
     2221 catatatcaa caaacaatca aaagaacaaa ataagaaaat tgaacaggaa gttgaggaga
     2281 cataacatca agttctcagt gggaaattga ttacattacg actactaggg tcaataaaga
     2341 aatattgcgg taaagaaagt ataataattc atgaaaagga gatcatgtta tcaaatatat
     2401 tttccatact ttatcaaaac gttactaatt ctaaacatat tgataaagaa aacctcctaa
     2461 ttttgattaa tggtgtagat ttatcaatat ccgctgatca aaaaattaaa tctggagata
     2521 tcgtaactat tgcgaatcta attcatggtg gttaagtcta ttaaatattt aatacacgta
     2581 atctgacatg aaagaaaaga ccaaaatcat tagtaacatt cccttatatg aaattaattc
     2641 agtttttgta gcaattatca gtacggatac cctgcatgta actgacatag gaactacgat
     2701 tgaatcattt agaaaaatgt tcccggaggt tatgattcag ggcattaatc caaaatatat
     2761 ttttggtaaa ggacatatct ttgaggtaat taaaattatt ttagaatcaa acatgagaaa
     2821 aatcaaaatt gctaagaggt tggagatgga actgttattg agattaattt gtaataatca
     2881 ggttgataag gcgatcaata tcggagggat aaaaaataat ggttcgggtt gtttcatttt
     2941 actttccgaa aataaacgtc tcatagtata ttcgatacgt tatttgcgga aaatgtttgt
     3001 tagacaaaac acctggctat tgaatgcatc aagagaaaag atgctctaca tgtgtaaaag
     3061 aatgaagttt agacatagca attttaataa taaggacttt ttgaaaattc taattgagaa
     3121 agcagcgctt gtttcatagt aggataactt gtaatgctta cttatatgcc tacattggta
     3181 aatcacagca tgatggttat gttaccgtgg aaataccaaa atctgttcaa tatacactgt
     3241 caattgtcaa caacaagcac aataagtcca agaatcaagc atttatccat gagtttaatt
     3301 tgcaaattac ccgaattgct gcactagatg aaatgtccct ccttactcca tgtagaaaaa
     3361 ctatgctggg cacagacacg aagtaagtta atagcactag atggttaaca atttgaatct
     3421 caactagagt taggttgaat ctcgttttct tctagttcat tgtgccaaca tgttaaaata
     3481 gtaaaattat catcatatta aatatgaaat acagaagtag aacagaaata gtgtcaatga
     3541 tactagaagc agcaaatggt agtgcaacga aaacaaaaat tatgtacaaa gcttttctaa
     3601 gctactctca attaagagaa tatctatctg tacttattga aaataattta ctggaatatt
     3661 tagaaggttc acaaacctac aaaacgaccg aaaaaggatt gaacctctta aagatgcata
     3721 acgaaatcgg agaacttctc caatccccta tgagagagtc aagaatccaa taaaataaaa
     3781 aataaactat ccctcactat gggatacaaa attgcctatt tcatggtaac atgattagat
     3841 tagtatatcg cgaaataggg atattgcata gacaagcata caatgaaata ccaactgggg
     3901 tgtattcaaa atcctgacat catatattca gttgttcaaa ttacattgca atattcgctg
     3961 atgatttttt tatattactg caaagatatt ttttccttta cagagctaaa tatttgattg
     4021 ggtctgagaa tcgaaatacc cgcaactcta tttactattt ggactagtat tatccaattt
     4081 ggatcatcta aatttacctt catatcaagt ttgcttgcca cggtagaaat aatgtcatta
     4141 gaatgtaatt tagaatgtct tttttctatc attatcatga aggtttcatg ttcgtccatt
     4201 tttctacaaa gctgattgac aacactatgg atctcggtta attctgcctt acaattcttt
     4261 tctaatggta tgattctgag aacatatctg aatttccatg gttcatttct aaccatttcc
     4321 ctacaatttt ccacaacttg aaagggatca agacaagtat caacaagtat aattcccgaa
     4381 acaggcgaaa tctcaattga aggatcttta tcgcctagaa cgtctagcag ttgcaatact
     4441 tcatcaaaag catcaccttc tctgtatcta aaggtagtta ccagcaaatt aaaattcatg
     4501 atattgttca cgaatagagg gtcttaactc ttatggtgtt tttctattcg atgataatta
     4561 tttctaaact ctgtcttcct atatgatcgc aatgtgtgaa aaattttgtc ttatttttga
     4621 aagaatctaa tgtttttaat atgcgataga actttaagat atcatgagtc aaatcaatat
     4681 agttgagaac aaaccagctt tattgattga tgtatttaat gctaataaaa caagtagagt
     4741 gctggtaatc agtgacttgc atattggtaa aacgtattgg ttacaaaata ctgatattgc
     4801 tattgattgg tatcatattg taaaagaaat tgaaaaagag ttgagtgata ttgttatttc
     4861 aaacaaagta acttctattg tattactcgg cgacataaaa aacaatatct ataaagtaga
     4921 aaaggaagat tggaatttga tccctaattt tttacattcg ttgtctgaaa tctgtgaagt
     4981 ctatttgatt ccaggaaatc atgattcgag gataggattg attacaccag agaaagtaca
     5041 tctgattgga gttaaaggga tggtaatagg tgatattctc ctaacacacg gacatacgtt
     5101 tccgtcagag cttaggtcca atattaataa aattgttatg ggacacattc atccgaggtt
     5161 tttcagagaa aacagtgttt tgaatggaca aaaaatctgg attttcttaa aagtaaaaaa
     5221 ggaatctata tttccaagta caaagggttc attggatctt atattgttac cttcatttaa
     5281 taaatatatt tatggtaacg gcagagtaaa aaataggaaa actaattcgc ctattttgaa
     5341 aaaaatacta agaaaggaaa gtatagatag atgtctgatt ttatcaattg atggaactat
     5401 tattggtaat gaaaatctct taagtgaagt ctttaactcc tgaattttag ttaatatgat
     5461 atttggataa tggttttatt gacggtttat tattatttct ccactctaaa caatgtatga
     5521 atgagattgc tgactctact gtggtaagta ctgggattcc catttcaaca gcttttcttc
     5581 tgatttgata ttcatcatcc agcataccta cgtacttttc aatggtaaat gtagatggaa
     5641 tatttattat gaaatctatt tttttgtcat ataggagatc cgcaatattt ggctttctta
     5701 taggctcgct aatcttgtgt acttcctgca catttgtagt gatgttgttc ttgataaatt
     5761 cagctgtatg ttctgttgcc agaatattaa atttcataga gtttatgagc gagatcggag
     5821 aaagcatttt ttctttgttt ttttgccctc caattgttat caacgccgat cctgacagtg
     5881 gtaaattata tccagccgct tcataggctt ttgacaaggc atcatgaaaa ctgttaccat
     5941 ggcaagcaac ttctcctgtt gactgcattt caactcccaa aactatgtct gaaccttcca
     6001 attgcataaa tgaaaactgt gggaccttta ttccaaagcc actgattttt aaccaaggtt
     6061 cattaagacc ctccggtaaa ctaccattag taatcgcctt ggcggctaac gaaatcaaat
     6121 taattccaac tatttttgac acaaaggggg tagtccttga tgctctgaca tttgcctcta
     6181 tcacatatac ctcatcgtcc ttgaccaagt actggatatt aagcggacct ttcacttcca
     6241 attttctagc tatcatattt gaataatcta ctattgtatt cattgtttgt ctgttcaatc
     6301 tccatggagg tatacacatc atagcatctc ctgaatgaat acctgcatta tcaatatgct
     6361 caattagtgc gcctatgatg acatcctttc cattacatac tgcgtctact tcaacctcgg
     6421 ctgaatcctg aaagaatttg ctgatcacaa ttggatactc ggggcttact tgcgcagcct
     6481 cgttaatgta tcgctctaat tgttcgtcat tccatattac tttcatggcc gccccactta
     6541 acacgtatga tggccttact aaaacaggga atcctacatt ttgagaaaat gtttttgctc
     6601 cattcaagtc cgtaaactta ttccaagggg gctgctttat attcaatgaa tctagcaatc
     6661 tactgaactt ttctctgttt tctgccatgt cagtatggat actatcagta ccaataatac
     6721 gtacatttag ttctcctaat ttaggtacaa gattgtttgc cgtctgccct ccaacacatg
     6781 tgactattcc cttcggacgc tccttttcat atatatccag aattcgttct aatgataatt
     6841 cctcaaaata tagtctgtcc gagatatcat agtcagtaga aaccgtttca ggattgcaat
     6901 taataactga tactgatttt atgccattat tttttaggcc ccaaaccatg ttgaccgtac
     6961 cccaatcaaa ttctacacta ctgccgattc tgtatggtcc tgccccaagt accattacag
     7021 aatttttctc tttcctaaaa acaatatcat ctttatctcc tccataagtt aaatacagat
     7081 aatttgtctt tgcaggccat tctgcagcta acgtatctac ttgttttaca actggattaa
     7141 taccaag
//
LOCUS       DASUMD010000111        11250 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_799576, whole genome shotgun sequence.
ACCESSION   DASUMD010000111 DASUMD010000000
VERSION     DASUMD010000111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 11250)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11250)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11250
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_799576"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..330
                     /locus_tag="VFX26_03100"
     CDS             <1..330
                     /locus_tag="VFX26_03100"
                     /inference="COORDINATES: protein motif:HMM:NF013412.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEX5573494.1"
                     /translation="IWYTVDKQNNIIFNTGGESVKAKNIRRDNRVRLCVDDQTPLFSF
                     VIIDGIAKIERNESSEIYKWAKIIAARYMGDDKSEAYGRRNSGEGEVLVKIKPTRTVG
                     QKDTAEW"
     gene            480..968
                     /locus_tag="VFX26_03105"
     CDS             480..968
                     /locus_tag="VFX26_03105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573495.1"
                     /translation="MLRNRNKKSKWKMEYEDTIYKIYDWNRNLAGYFFPDYDLEETKE
                     NEDEIIEKLNQSHQSVQGGNILLPMVKLNLLDKEEGIDLDYAIVALEQSLQRVKAWNQ
                     WLLQNGNQFEINGNAIFTSREDREMLSIGLRINKDLTLGEKELRDALIPLLDELHEAG
                     LL"
     gene            complement(1306..1584)
                     /locus_tag="VFX26_03110"
     CDS             complement(1306..1584)
                     /locus_tag="VFX26_03110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAM domain-containing protein"
                     /protein_id="HEX5573496.1"
                     /translation="MSYNRDRGYGRGRKISYNSHASRNLKRRSPLTKPVELDKIYEVD
                     ITEITGKGDGIARVQGFIVFIENGKVGNKIRVKVTEVADRFAKATIKV"
     gene            complement(1662..2240)
                     /locus_tag="VFX26_03115"
     CDS             complement(1662..2240)
                     /locus_tag="VFX26_03115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573497.1"
                     /translation="MIRILISMILVTTFSLLSAPCLASSEIKDEIKVTPPLNWEPSPT
                     NNSTTMIWFQNSTKSIFAIIKAPDNLVFPLFLVGPFMTEYLKHKGILESADQLTFGQS
                     NHGYRYLLNLSSPSKLLNSSSGIIPENEFLREIPQGYDVPFKGMLILTQKQNELYAII
                     FLSPKEKFDSILNEIQPTLDSIQLTGYTATPN"
     gene            complement(2284..3156)
                     /locus_tag="VFX26_03120"
     CDS             complement(2284..3156)
                     /locus_tag="VFX26_03120"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX5573498.1"
                     /translation="MGSSNNQKVAVVTGSSSGIGFETSLLLARNQFVTYATMRNLNKS
                     DELLKIAAKEIIPLKVIQLDVNDDNSVNSAIDIIVKENGRIDVLVNNAGYDLFGSLEE
                     LTIDEIKGQFETNFFGVIRACKAVIPTMRKQGSGTIINISSLGGRIGLVPFLTAYHAS
                     KFAVEGFTESLRQELAQFNIDVILIEPGAIRSNFIDNSKTGKNYNPENSPYASTIQKV
                     FEGFQSIMAESSHPRDVAEVILKVVNTSNPNVRYSVGKDAENVLKIRTELSDKELEKW
                     VRESYMDKKGFIRE"
     gene            complement(3364..4161)
                     /locus_tag="VFX26_03125"
     CDS             complement(3364..4161)
                     /locus_tag="VFX26_03125"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX5573499.1"
                     /translation="MNEFNQKAIATWSSGDYRSIATFIPPISAHLVRLVNISPNKSVL
                     DVACGNGNTAITARRMGARVTGLDLTSELLDRAVEEETMAEIDGIEWKQGDAEDLPFE
                     DESFDIVLSTFGHMFAPHPELAIKEILRVTKKGGSIGFATWPPELSVGSMFRTIGKYT
                     STSVPNPPPSPMEWGIPDVVRKRLSGINEIYFERGTVNVPILSPNHYWIHFSTKYGPL
                     IQAIRVVKEQGEEKVELLRKDFLNAIKPYIYENELRVGYLLTIGIKA"
     gene            complement(4560..5468)
                     /locus_tag="VFX26_03130"
     CDS             complement(4560..5468)
                     /locus_tag="VFX26_03130"
                     /inference="COORDINATES: protein motif:HMM:NF020039.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HEX5573500.1"
                     /translation="MHAKGFFMLVITTLGTSLLAFAVVVSSIASGSTQKTVGDDMEQT
                     YTFIKKWGGEGTADGKFLRPHDLDFSPDERILYVVDRDGNRIQTFDKNGTFLFAWGKL
                     GKGIDQFHVPYGIDVDIEGNVWVADRANDRVQKFDSKGKFILKFGNKDPEPSSEPGKF
                     DNPRDVAVDRDLKHVYVADSKNNRIQKFDLNGSFIETIGKLGNMLGEFNLPTTIVIDS
                     KGNFIVNERGNERIQKFDSNWNAVLMWGSKCSGNSEFCHIEHIAVDKYDNVYVTDPQS
                     DPGCSQQPRVLKFDTQGNFITKWGSY"
     gene            complement(6005..6322)
                     /locus_tag="VFX26_03135"
     CDS             complement(6005..6322)
                     /locus_tag="VFX26_03135"
                     /inference="COORDINATES: protein motif:HMM:NF025178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme iron oxygenase ferredoxin subunit"
                     /protein_id="HEX5573501.1"
                     /translation="MSENFVKVAESKEIGPSSMKAVEVDGEKVCIINAEGNYYAIGNV
                     CTHVGGPLDEGTLEGYEVECPWHGSKFDVRSGEPTKPPAMRAVPKYEVKIEGNYILVR
                     KQK"
     gene            complement(6561..7064)
                     /locus_tag="VFX26_03140"
     CDS             complement(6561..7064)
                     /locus_tag="VFX26_03140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573502.1"
                     /translation="MANLAKYMIMLGLVLSMFGLNFIIDSAPSAFAQATQGITISAGN
                     SSFVPLTNTDANQVRVNIAYSLEDESLENEMINAVMAVFAPNGTLLRTTSFPSGFTAQ
                     SDGEETLRTAFRDKSLTSVSANVTFTDLSKTKSLSNVLTVNLELEQTPTVSSLLGTTP
                     SLQNSSK"
     gene            complement(7305..7661)
                     /gene="mntR"
                     /locus_tag="VFX26_03145"
     CDS             complement(7305..7661)
                     /gene="mntR"
                     /locus_tag="VFX26_03145"
                     /inference="COORDINATES: protein motif:HMM:NF003025.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator MntR"
                     /protein_id="HEX5573503.1"
                     /translation="MEDYLEVIYELVEEKGYATTVDISTYLNVSSPSVTKMVQRLDES
                     GYLNYEKYRGIKLTDEGIRVARNIRNRHGLLAEFFKIIGVDEEIANNDAEGIEHHLHP
                     QTIKKLEEFVRDLKKL"
     gene            complement(7817..9133)
                     /locus_tag="VFX26_03150"
     CDS             complement(7817..9133)
                     /locus_tag="VFX26_03150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent cation transporter"
                     /protein_id="HEX5573504.1"
                     /translation="MEREESSSKNTNRYPISKKTILFGIVPFIVIGAMLILLLSSPGI
                     LFQSPIEPLPQISIEKVEFSDQYIVAFVRNTGPSEITIAQADVNDRIHPAAIEPEQTL
                     SKFSDAKVIIPFIWNSGEPYSIGITTDDGTRFEKTIDSAAQVPRPTIEQASSFALIGT
                     YVGVIPVMMGLVWYPFIRRLSISKYNFFLSLTAGLLVFLGIDALLESNEIAMDNLAPV
                     FNSQILIIIITIVSFLALQYVSQKLVQRASKSKSDIGYNSEIASRSTPDLELKDVDSS
                     SGSSLQQQLLIRPLAISMMISIGIGLHNFGEGLAIGAAVLLGEIALSSFLILGFMLHN
                     TTEGLAIVAPMAKARRIPIRKLIVMGLIAGVPTILGTWIGGFLYSPVATVIFLSIGAG
                     AIFQVVYSIGSWMHHTNGSKGLLGNLSIITGFALGMLLMYLTGLLI"
     gene            complement(9133..10302)
                     /locus_tag="VFX26_03155"
     CDS             complement(9133..10302)
                     /locus_tag="VFX26_03155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HEX5573505.1"
                     /translation="MAHSRFVVIFSVMISVIILGLSLVLYSRASVTEQNSSKIDTVGG
                     HTPGYPILQTTGDVLDPTSLNINPETAVVDPSKYLREFNYGTVTNSSNGTKIREFTLI
                     ASDTQTKEVSPGVLYNVWTFNGTIPGPTIRATEGDTIRITLINNGSKFHSIHFHGIHP
                     SEMDGVFEGIAPGGKFTYEFTAEPFGVFPYHCHMQPLEEHITHGLYGALIIDPKKPRA
                     SADEMIMIMNGYDTDFDTENNFYTVNGIPYYYMHHPIQIDKNRLIRIYLLNMLEFDPL
                     NNFHLHANMFDFYKTGTKLIPDEYTDIVTMNQAERGILEFSYKYPGKYMFHAHKTEFA
                     EKGWTGLFLVNDETSPVSIQNSNLTAATTNATDQIPYNTSNLSNVTSILPAGGLK"
     gene            complement(10734..10871)
                     /locus_tag="VFX26_03160"
     CDS             complement(10734..10871)
                     /locus_tag="VFX26_03160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573506.1"
                     /translation="MSDESEREEKEEEREEIKDETHELEDVEQDEEDEKEKEEEEKEE
                     L"
BASE COUNT         3381 a         2187 c         1971 g         3711 t
ORIGIN      
        1 atatggtata cagtggacaa gcaaaataat attattttta ataccggcgg tgaatcagta
       61 aaggcgaaaa atattagacg agacaatcga gtccgtttgt gtgttgatga tcagaccccc
      121 cttttctcat ttgttattat agacggtata gctaaaatag aaagaaatga atcaagcgag
      181 atttacaaat gggccaagat tattgcagca agatatatgg gtgatgataa gtcagaagca
      241 tacggtaggc gaaatagtgg agaaggagaa gtattagtaa aaatcaagcc taccagaact
      301 gttggtcaaa aagatactgc agaatggtaa ctgaggaatt taacttttca taaatggatt
      361 taaatgggat gaatgggttg gatgcatgga ataactttat ggagtttcct cagactacca
      421 tgatagtcca agtacgagat actaacttag atatattgta ttgaataact gaatcctgga
      481 tgttacggaa tagaaataag aaatcaaaat ggaaaatgga atacgaggac acaatttaca
      541 agatatatga ttggaacaga aatctggcag gatatttctt tcctgattac gatctggaag
      601 aaaccaaaga gaatgaagat gaaattattg aaaaacttaa ccagtcgcac caaagtgtac
      661 aagggggaaa tattctcctt cccatggtaa aattaaactt acttgataaa gaagaaggaa
      721 tagacttaga ttatgctatt gtagccctgg aacaaagtct tcaacgagtc aaagcatgga
      781 atcaatggtt actacaaaat ggtaatcaat ttgagataaa tggaaatgcg atatttacct
      841 caagagagga cagggagatg ctttcaattg gcctcagaat aaataaagac ttaacacttg
      901 gagaaaaaga attgcgtgat gcgttaatac cattattgga cgaattgcat gaagctggac
      961 tattgtagaa agaattattc tttatgaagg ggtagaaaaa ttgacagata gatttacctt
     1021 gttatttgag gaatgatata acatagtaga acatgccaaa tatgatatcg gagtctgata
     1081 cttcaactaa agttacccga ctatagacag ataatgtctt aagctcaact caccttaaag
     1141 aaaataaaaa gaggttctta gtattagagg atcaaaactt taaagttttc tctttctctg
     1201 cataagtata atttatcaga gctcattcgg aatcaagtct tgcatgtagt agggttctac
     1261 taactagaat ttagctcttt attctgacat gcagagttat gttagttaga ccttaattgt
     1321 tgctttagca aatctgtctg ctacttcagt aacctttacc cgaatcttgt tcccaacttt
     1381 tccattttca ataaatacta taaatccttg cactctagcg atgccatcac cttttccagt
     1441 aatttcggta atatccacct catatatctt atcaagctca acgggttttg taagtggact
     1501 acgtctcttt aaattcctgc tggcatggct attataactg attttcctac cacggccgta
     1561 acccctgtct ctgttgtagc tcatttgtaa tttagattgt gattttccta atatatagat
     1621 agaatagtaa tcagtttgta aatttaagag ttaagtggtg ttcaattagg cgtggccgta
     1681 taacctgtta attgaattga atcaagtgtt ggctggatct catttaatat agaatcaaat
     1741 ttctcctttg gactcagaaa tattattgca tataactcat tttgcttctg agttagaatc
     1801 aacatcccct taaaaggaac atcataacct tgaggtatct cacgtaaaaa ttcattttct
     1861 ggtattatgc ccgaggaaga attcaagagt tttgaaggag aagaaagatt aagcaaatat
     1921 ctatatccgt gattactttg accaaaggtt aactgatcag cagattctag tattccttta
     1981 tgttttaaat attcggtcat aaaaggacca acaaggaata aaggaaatac caaattgtca
     2041 ggagccttaa ttattgcaaa gatgcttttc gtagaattct gaaaccatat catcgtagtc
     2101 gaattattgg taggacttgg ttcccaattc agaggaggag tcaccttaat ctcatcctta
     2161 atctcactag aggcaaggca cggcgcagac aataacgaaa atgttgttac taaaatcatc
     2221 gaaattaaaa ttctaatcaa tttctatctc ctttctactt atttctatta gtgtacttac
     2281 agatcattcg cgtatgaatc ccttcttatc catatagctc tcgcgtaccc atttttccaa
     2341 ttctttatca gataattctg ttcgaatttt taggacattt tccgcgtctt ttcccacaga
     2401 atatctcaca tttggattgg atgtattgac aacttttaga atcacttcag ctacatctct
     2461 tgggtgagat gattctgcca tgatcgattg gaagccttca aataccttct gtatggtgct
     2521 tgcgtacggt gaattctctg gattataatt ttttccagtc ttgctattgt caataaaatt
     2581 gcttctgatt gcccctggct caattagaat gacatcaata ttaaattgag cgagttcttg
     2641 tcttaaggat tctgtaaatc cctccacagc aaacttactt gcgtggtatg cagtaagaaa
     2701 tggcactaat cctattcttc caccaagaga acttatgttt atgattgtac cacttccctg
     2761 cttcctcatt gttggtatca ctgctttaca tgctctaatc actccaaaga aatttgtttc
     2821 aaactgtccc tttatctcat caatcgtcaa ctcttcgagt gagccaaata gatcataacc
     2881 cgcattattg actagaacgt ctatcctgcc attctcctta acaatgatgt caatggcact
     2941 atttactgaa ttgtcatcat ttacatctaa ttgaatcacc ttcaatggga tgatttcctt
     3001 agctgctatt ttcagcagtt catcactctt attcaaattt ctcatagtag cataagttac
     3061 aaactgattc cttgctaaca aaagagatgt ttcgaatcca ataccacttg agctgcctgt
     3121 tactacagcc actttctggt tattgctaga tcccatgcaa agtatatgtt gaagaaacac
     3181 ataaagctgg tgtttttcgt actaggaatc ttgcgattta aattgttgga accataccgc
     3241 caacctgaac cacctgattg tctatattat tttctaaaca agtatatgag catatgagcc
     3301 cgaatactta gccggtctgt cgaggcgaat ttgatttttc atcatcacca ataagttggg
     3361 aggctatgct tttatcccaa tcgtaagaag gtatcctact cttaactcgt tttcgtaaat
     3421 ataaggctta atggcattca gaaaatcttt tcgcaagagt tcgacctttt cttcgccttg
     3481 ttctttgact actcggattg cctgtatcaa aggaccgtat tttgtactaa aatgaatcca
     3541 ataatgattt gggcttaata tggggacatt aacagtgcct cgttcaaaat aaatttcgtt
     3601 gattccgctc agacgctttc ggactacatc tggaattccc cactccattg gagaaggtgg
     3661 gggattcgga actgaagttg atgtgtattt gcctatcgtg cgaaacatgc ttcccacaga
     3721 aagttctgga ggccaagttg caaacccaat agatccacct ttcttcgtaa ctcttagaat
     3781 ttctttaatt gctagttctg gatgaggtgc gaacatatgc ccaaaagttg aaagaacgat
     3841 atcaaatgac tcatcttcaa aaggaaggtc ctcagcgtct ccttgcttcc actctatacc
     3901 atctatttct gccatcgttt cttcttcaac agcccgatcc aaaagttcag atgtcaaatc
     3961 caggcccgtg actcttgcgc ccattctgcg ggccgtgatg gcggtatttc catttccgca
     4021 ggccacatct aggaccgatt tattgggact tatatttact aatcgtacta gatgtgctga
     4081 tataggcgga atgaatgttg ctatactacg gtaatctcct gaagaccacg ttgcaatagc
     4141 tttttggtta aactcattca tagataggaa ttgcttagtc tcccttttta ttttatccgt
     4201 tgaaggattg tatgtgtttt aggtttacgt gactatatct gagcatcata taactaagaa
     4261 tcatatccaa gctggacata tttcatatgt tatattattt tgtaatgaaa attatgaaat
     4321 ttattttgca atattttatg gatgagtgtg caatgaaatc attctgttaa caattcggat
     4381 tcaattggga ggctcgtaaa taatcatgtt ctactaacta gttttaatct tttattttat
     4441 tatcagtcta ttattggttc aaaaacttgg atattatcat tctttctatc ggatacatat
     4501 acaagtcctt cagagtctat tgccaggtgt tctggatcta cgaattctcc atcgccttct
     4561 caataagaac cccattttgt aatgaaatta ccttgagtgt caaattttag aactcgaggt
     4621 tgttgactac agccaggatc agattgcgga tcagttacat acacattgtc atacttatca
     4681 acagcaatat gttctatgtg acaaaactca gaatttccac tgcattttga gccccacatc
     4741 aagacagcat tccaattgct atcaaatttt tggatacgtt cgtttcccct ttcatttact
     4801 atgaaattgc cctttgaatc tataacgatt gtcgtcggaa gattgaattc accgagcatg
     4861 ttacctaatt tacctattgt ttcaataaaa cttccgttta aatcaaattt ttggatacga
     4921 ttgtttttag aatctgcaac atatacatgt ttcaaatctc tatctacagc aacatctcgt
     4981 ggattatcaa attttccagg ctcactactc ggttcagggt ctttgttacc aaattttaag
     5041 ataaatttac ccttactgtc gaatttttgc actctatcat ttgctctgtc agcaacccat
     5101 acgttacctt caatatcaac atctattccg tacgggacgt gaaattgatc aatacccttt
     5161 cctaatttac cccaagcaaa gaggaatgtg ccgttcttgt cgaaagtctg gattctatta
     5221 ccatccctgt caacaacata gagaatcctt tcatcaggac taaaatctaa gtcatgagga
     5281 cgcaagaact tgccatctgc agttccctct cccccccatt ttttaatgaa tgtgtaagtc
     5341 tgttccatgt catctcctac agttttttga gtcgaaccgg aggcaataga gctaacgaca
     5401 actgcaaacg ctagtaaaga tgttcctaat gttgttatga ctagcatgaa aaatccttta
     5461 gcatgcatac ttatatctcc tatccgaaca tacaaataga taagcgatct gatacactca
     5521 tctaagtttt ttaacactga ttaaatgaac atatttttgg aaggattcat atttccttgt
     5581 tccttttatg cagtagggtt ctaacaaatg gtatttagct tctcatttct gtgagcattg
     5641 gagttgtccg ctaagaatga tataatgaat tttatattat acggaagaat aagataagta
     5701 aaattgaaca ccaaaacatg tcgtcattgg gcatgtaata aagctgacaa tacctgcgta
     5761 ggttgtggtg ctataatttg cccaatatgt ctaaaagagc cagtaaattg taaatgtgaa
     5821 aataaagata tttgttgcac atcataattt agtgcaaaaa aataacttta gatgctacta
     5881 attcttgtcc cttagagata ggtatgcatt ctactatagg atctatcggt ttgaatgttg
     5941 gtccttctaa taatttattt tgttcattta aaaggaatga aaaattatca catgcatatc
     6001 agtttcattt ttgttttctt actaaaatgt aattaccctc tattttcact tcatactttg
     6061 gaactgctct cattgcagga ggctttgtcg gctcaccact cctaacatcg aattttgaac
     6121 catgccacgg gcattcaact tcatatcctt caagcgttcc ctcgtccaag ggacctccaa
     6181 catgagtgca gacatttcct atcgcgtaat aatttccttc agcattaatt atacagactt
     6241 tttcaccatc tacttcaact gctttcatag atgagggtcc tatttctttt gattcagcaa
     6301 cctttacaaa attctcagac attttctaca cttaatattc ctcaaaatag tatataacca
     6361 attataggta caagcgatag aattgatttt gcaggtgttc ggacgtctcg ggatatatat
     6421 gaaaatttaa ttggggaaac ttgcaaaaaa ttgatatatg ttgaatcttt ggctttaaaa
     6481 gaaggtttga ggttacccga aataagagga ttagatttca tcccagcttg tcggaaatcg
     6541 tgttgttaac aatctggatg ttatttagag gaattttgta acgagggtgt ggtccccagc
     6601 agtgaactta cagttggtgt ctgttcaagt tcaagattga cagtaagcac atttgataat
     6661 gactttgtct tcgacaaatc tgtgaatgta acattcgccg atacgcttgt cagcgactta
     6721 tctcgaaatg cggtcctaag tgtttcttcg ccatcactct gagcagtaaa accgctagga
     6781 aatgatgttg ttcgtagtag tgtaccgttc ggagcaaaca ctgccatcac tgcgtttatc
     6841 atttcatttt ctagtgattc atcttcaaga gaatatgcta tatttactcg aacttggttt
     6901 gcgtcagtat ttgttagagg cacgaagctt gaattacctg ctgaaatggt tataccttga
     6961 gtagcttgtg cgaatgctga cggtgcagag tctataataa aattcaaacc aaacatcgac
     7021 agcacaagac ctaacataat catatattta gctaaattgg ccattattgc ttattcaacc
     7081 atattgaatt atccatccta aataaaaaat gtttcctatc caaaagagga ctcaagaaat
     7141 ccatatactg aaattgccta taattagaat gtctttttta ctcaatgctt ttttcatttt
     7201 gatgtgaaac tcacacactg ctaatcattt tggataaaag aaatacaagt tcacagtgct
     7261 tagacaaaac cagtatttaa tttaggcacg tgtttcgttt ttggttataa ttttttcagg
     7321 tctctcacga attcttccaa ttttttaata gtctgaggat gtaagtgatg ttctataccc
     7381 tcagcatcgt tattggcgat ttcttcatcg accccgatta tcttaaagaa ctctgccaga
     7441 agaccatgtc tattccggat attgcgcgca acacggatgc cctcgtcggt tagcttaatt
     7501 cccctgtact tttcatagtt aagataacca ctttcatcaa gtctttgcac cattttggtc
     7561 acactgggag aactaacgtt taggtaggtg gaaatatcta ctgtggtcgc ataccccttt
     7621 tcttctacta attcatatat tacttcaaga tagtcctcca ttctatctgt tctctcgtcc
     7681 ttctttacgc tgtttgcttc gcgaattgct actaatctgc cgtgattttt tatctccgga
     7741 atttcctcaa gtttatttac cgcagataca cctccctaga atgcttgttt ttcacattaa
     7801 ttattttgag actcatctat atcaacaatc ctgtaagata cataagtaac attccaagtg
     7861 caaagccagt aatgatagaa aggttgccga gcaatccttt gctgccgtta gtgtgatgca
     7921 tccaagagcc aattgaataa actacctgaa atattgcacc tgcccctatt gaaaggaaaa
     7981 ttaccgttgc cacaggagaa tacaaaaatc ctccaatcca tgttcctaag atagtcggaa
     8041 cccccgctat caaacccatg actatcaact ttcttatagg aattctccga gccttggcca
     8101 tgggtgcaac gatagctaat ccttctgtag tgttatgcaa cataaatcct aaaatcaaaa
     8161 atgagctcaa agcaatttct cctaacaaga ctgccgctcc aattgcgagg ccttccccaa
     8221 aattgtgtaa accgatccca attgaaatca tcatggatat tgctaacggc cttatgagta
     8281 gctgctgttg caacgatgaa ccagaggagg agtcaacatc ttttagttcc aaatcaggtg
     8341 ttgagcggct agcaatttcc gaattgtatc ctatgtcgga tttggattta gacgcacgct
     8401 gaactaattt ctgggaaacg tactggagtg ctaaaaacga aacaatggtg atgataataa
     8461 tcagaatctg agagttaaag acaggtgcaa gattatccat cgctatctcg ttactttcga
     8521 gtagtgcatc aataccaaga aaaactaata gtcctgcagt gaggctgagg aaaaagttgt
     8581 acttgctaat acttaacctt cttatgaaag ggtaccacac aagacccatc attacaggga
     8641 taactccaac ataagttcct attagagcaa atgatgaagc ttgttcaatt gttggacgtg
     8701 gcacctgagc tgctgaatca atagtttttt caaatctagt tccatcatcc gtagttatac
     8761 ctatgctata aggttctccc gaattccata tgaacgggat tattaccttg gcatctgaga
     8821 atttactaag cgtttgttca ggttcaatag ccgcagggtg tatcctatcg ttgacatcag
     8881 cttgtgcaat ggtaatctca gaaggaccag tattcctgac aaaggccact atatattggt
     8941 ctgaaaattc cactttctca atagaaattt gcggcagcgg ctcgattgga gattgaaata
     9001 atatacctgg agaactaagg agcaaaatta gcattgctcc aataacaatg aatggaacta
     9061 taccaaacag tattgtcttt tttgaaatag ggtaacggtt agtattttta ctactacttt
     9121 cttccctttc cattacttga gtcctcctgc tggtaaaata gaagtaacgt tactaagatt
     9181 ggatgtattg tatggtattt gatctgtagc atttgttgtt gcagcagtaa ggttcgaatt
     9241 ttgaatacta actggggatg tctcatcatt cactagaaac aaccctgtcc atcctttttc
     9301 cgcaaactca gtcttgtgag catgaaacat atactttccc ggatatttat agctgaattc
     9361 caatattccc cgttctgcct ggttcatagt aacgatatca gtatattcat ctggtatcaa
     9421 tttcgttcct gttttataga aatcaaacat atttgcgtgt aagtggaagt tgtttaaggg
     9481 atcaaattcg agcatattca atagatatat tcgaattaat ctatttttgt caatttgaat
     9541 tggatggtgc atgtaatagt atggaatacc gttaaccgtg tagaaattat tttcagtatc
     9601 aaaatcagta tcataaccgt tcatgatcat tatcatttca tctgcgctag cacgaggttt
     9661 cttgggatct attatcagtg caccgtaaag tccatgggtt atgtgttcct cgagtggctg
     9721 catatgacaa tggtatggga atactccaaa tggttctgcg gtaaattcat aagtgaattt
     9781 gcccccaggc gcaattccct caaagactcc atccatttca gaagggtgta tgccatgaaa
     9841 gtgtattgag tggaatttag aaccgttatt aattaaagtg atcctgattg tatccccttc
     9901 tgtagctcgt atagttggtc ctggtattgt accgttaaac gtccatacat tatacaaaac
     9961 gcccggagaa acttctttag tctgcgtgtc tgatgcaatc aatgtaaact ctcttatctt
    10021 agttccatta gaagagtttg ttaccgttcc atagttaaat tctctcaaat atttagatgg
    10081 gtcaacaact gctgtctctg gatttatgtt caatgaagtc ggatccaaga catcaccagt
    10141 cgtttggagt ataggatatc ctggcgtatg accgcctaca gtatcaatct tcgatgagtt
    10201 ctgttcggtc acagaagccc tactatacaa taccagcgac aaacccaaga taatgacaga
    10261 tatcataacg ctaaagatta ctacaaatct cgaatgagcc ataatctaat taacttgctt
    10321 taagttagtt agataaccta ataaatcttt ccttaggtta acatatttaa gttcgtgcaa
    10381 atgagtttga attgcctgga ccaatgcatt tgtgcgtatt ccgatccggc cgttgaccac
    10441 ttaatttcca actttttgga tatcaatcag cctacaattg ctaaccaaaa attatgttaa
    10501 cctttgctac cggataattt ccaaagaatg gacaatattt cagatttatt actgtagaaa
    10561 ttcctactaa ttgaaatttt atctcacatc gattgtagga gaatgttcca gttctcatgt
    10621 gtaaatcgac gctatcggtt ctaaaaggag gttctaatag aggaatttcc tactaggtga
    10681 atcaaccggt ttatggagag atttaatatg aaaagtaagg ctgtgttcac ttatcataac
    10741 tcctctttct cttcctcctc cttttctttc tcatcttcct cgtcctgttc aacgtcttct
    10801 agctcatggg tttcatcctt gatttcctct ctttcttcct ctttctcttc tctttcagat
    10861 tcatcgctca tagtctaagg attaagaatg caaactataa taaaaataat tacaaatatc
    10921 tagaatcttt tttaataatg cctttaccct actaattagg ttaaggttac taaatttggt
    10981 agcctttaat attgctattt tttcttaact atactcatgt ttgtcttagt gcggcacgat
    11041 tttacactca caggtttcct ggggaccgtt acaactttta caattttttg tttccgaatc
    11101 tatagcaccc caacagcggg aacaccccgt atttatgaca tcatcgtctg ccattaactg
    11161 cttaaatctc gtgatactat ataacacttt attcaatcaa tattagtaac aatcaggaca
    11221 attcaaaagt tcacttggtc atgtagggac
//
LOCUS       DASUMD010000112         4365 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_25950, whole genome shotgun sequence.
ACCESSION   DASUMD010000112 DASUMD010000000
VERSION     DASUMD010000112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4365)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4365)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4365
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_25950"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..365)
                     /locus_tag="VFX26_03165"
     CDS             complement(<1..365)
                     /locus_tag="VFX26_03165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HEX5573507.1"
                     /translation="MTDTKGKVPNIVAIEVIKKNGVDVEKLKELITKGVGAEFTTYYY
                     YTILRMHCTGLDGEGIKEIVEEARIEDRNHFEAMVPRLYELGGSLPRDIRKFADQAGC
                     PDAYLPKNWENLTSIIEVLL"
     gene            523..807
                     /locus_tag="VFX26_03170"
     CDS             523..807
                     /locus_tag="VFX26_03170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573508.1"
                     /translation="MSFIDNDGNIIVPKTVRPLMEYEPTILGEKKGSINQYRYGNLHI
                     REYDNYYSVHYDKIDPRNDPFGHILVDASKYFPGIMMLSALSDYLIGREK"
     gene            908..2539
                     /locus_tag="VFX26_03175"
     CDS             908..2539
                     /locus_tag="VFX26_03175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AarF/ABC1/UbiB kinase family protein"
                     /protein_id="HEX5573509.1"
                     /translation="MMEDSKEILDSAIETDRKEPTFVFKKPSIWLIIKTILKLIPVIV
                     YLRKDRREWVKKEGKNVNEKKFRKHAERALKTFIALGPSYIKLGQWLSSRADLLPQPY
                     LDVLEKLQDDVLPEPFSEVRPILEKELGPIEDIFEYFNPSAISGASLGQVYRAKHNEE
                     DVVVKISRPNIEETIGQNIYILRKLLPFATRFIDENLRFSAEGMLSQFIETVHEEMDY
                     RIEARNLIQIKNNLKEDKSVIVPKVYLDRTSHHVITMEYLPGTKVTDIRSLNQNNIDR
                     AKLVYRIHRLFFKMLLRHSIFHADPHPGNISITSNGTIILYDFGMVGRLDDETRRKLV
                     RLYLGLVDKDPVRTTDVLIELGTLETSVDRRLVEKGLELSIQSLHGKKVDRMEVKALQ
                     DLANKTLSRFPFRLPKNLALYMRMASILEGIYHYHDVKFQFVRVLVSLLEEEGLIQEA
                     YVEEFKRFVNRFAKGIEVSSELAPMIKQYLTDQKLENKTRNVSNVLPISIISSSIFIG
                     STFIFPYERIFSYLGFALSAALLIGTFIFNKLNRK"
     gene            2905..3234
                     /locus_tag="VFX26_03180"
     CDS             2905..3234
                     /locus_tag="VFX26_03180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573510.1"
                     /translation="MIGTVLGTSATNAFADDPFKNKVNIDTQQDNTNSCDESQQGENN
                     SDCEITDTMVTDPFIIEGDENKILLDFDENNKNDCDESGDGDNNSVCTITDTKVIGPI
                     DILATPP"
     gene            3350..3823
                     /locus_tag="VFX26_03185"
     CDS             3350..3823
                     /locus_tag="VFX26_03185"
                     /EC_number="1.-.-.-"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: protein motif:HMM:NF013412.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004733 - pyridoxamine phosphate oxidase
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEX5573511.1"
                     /translation="MKLLHGSPGFGVQLSQNEIAKFLSDSKLNLHLGTIDSDDYPNVH
                     PTWYLYDNSKDVIFVETGKQSKKTNNLKRNDKIYFCIDEGNPPYKGVRGKGDVKILNN
                     PDTNLPITERIMLKYLGSIDHPMAKILLENVRNGNSVILEIKPKYYSTWDYSRNS"
     gene            complement(3979..>4365)
                     /locus_tag="VFX26_03190"
     CDS             complement(3979..>4365)
                     /locus_tag="VFX26_03190"
                     /inference="COORDINATES: protein motif:HMM:NF012573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005509 - calcium ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HEX5573512.1"
                     /translation="LLNGLSGSDEIQGEGGNDILNGSDGNDYLSGGDGTDVLDGGVGS
                     DELQGGDDPDRLVGGIESDILYGASNNDILDGGPGDDRLYGGQGNDTLSGGQGGDYYR
                     CGSGEDRITNFNLADGDHEFGDCEIK"
BASE COUNT         1520 a          777 c          738 g         1330 t
ORIGIN      
        1 agtaatacct ctattatgga ggttagattt tcccaatttt ttggaagata cgcatcagga
       61 catcctgcct gatcagcaaa ttttctaata tctcttggta aagagcctcc gagttcatac
      121 agccttggta ccatggcctc aaagtgattt ctgtcttcga tccttgcttc ttcgactatt
      181 tcctttatac cctcgccatc aagtccagtg cagtgcatcc tcaaaattgt ataataataa
      241 tatgtagtaa attcagcacc aacaccttta gttattaatt cttttaattt ttcaacatca
      301 actccattct tctttataac ctcaatcgca actatatttg gaaccttacc ctttgtatca
      361 gtcataggga aaaaaataga taatattcta taaaagtctt cttatggaat tagtgaatca
      421 cccaagtttg aattaaaacc aatttgtgaa caaatttgtc tatctatcaa tatctgaata
      481 attgaaggta atttttatat cttaagttat tgttagcttg ctatgagttt tattgacaac
      541 gatggaaata tcattgtacc taaaacggta aggcccctta tggaatacga accaactatt
      601 cttggagaga aaaaaggatc aataaatcag tatcgatatg gtaacttgca tatacgcgaa
      661 tatgataact actatagcgt tcattatgat aaaatagatc ccagaaatga tccttttgga
      721 catattttgg ttgatgcttc aaaatatttt ccaggtatta tgatgctatc tgctctttct
      781 gattacctca ttggcaggga aaaatgacgt aagttgaacg ttaatgtatc cccattaata
      841 atattgttct cccagcctta cgagattaca atttgcattt tcaatatgaa aggggtgaaa
      901 aatactgatg atggaagata gcaaagaaat attggactct gccatagaaa ccgatagaaa
      961 agaacctact tttgtattca agaaaccatc aatttggcta ataatcaaga cgatactaaa
     1021 actaattcct gtcatagtat atcttaggaa ggacaggaga gaatgggtga aaaaagaagg
     1081 caaaaatgta aacgagaaaa aattcagaaa gcatgcagaa agggccctaa aaactttcat
     1141 cgcacttggc ccctcataca taaaacttgg tcaatggtta tcatcaagag cagatctttt
     1201 gcctcaacct tatttagatg tcctggagaa gcttcaagat gatgttttac ctgaaccatt
     1261 ttcagaggtt agaccaattc ttgaaaagga actcggtcca atagaagata ttttcgagta
     1321 ttttaaccct tcagcaatct ctggagctag tttaggtcaa gtatatagag caaaacacaa
     1381 tgaggaagat gtagtagtaa agataagtag gccaaatatt gaagaaacaa ttggacaaaa
     1441 tatctatatt ttaagaaaac tgttaccttt cgctacacgt ttcattgatg aaaatctcag
     1501 gttttcagca gaagggatgc tatctcaatt cattgaaaca gtacatgaag aaatggatta
     1561 cagaatagaa gcaagaaatt tgatacagat caagaataat ttgaaggaag ataaatcagt
     1621 aattgttccc aaagtttatc ttgatagaac ttcacaccat gtaattacaa tggaatactt
     1681 acctggaact aaagttaccg atataaggtc tttaaatcaa aataatatcg atagggcaaa
     1741 actagtatat cgtatacata gactgttttt taaaatgtta cttcgtcaca gtatttttca
     1801 tgctgatcca catcccggta acatctctat aactagcaac gggacaataa tactttatga
     1861 tttcggcatg gttggcagac ttgatgatga aacaagaaga aaattggtga gactatatct
     1921 gggacttgta gataaagatc cagtaagaac aactgatgtg ttaatagaac taggtacact
     1981 tgagacttct gttgacagaa gattggtgga aaagggactc gaattgagta tacaatcatt
     2041 gcacggcaaa aaggtggata ggatggaagt aaaagctctt caagacttgg caaataaaac
     2101 gttgagtaga tttccgttca gattgcccaa aaatcttgca ctatacatgc ggatggcctc
     2161 aattctcgaa ggtatttacc attatcatga cgtaaagttt caatttgttc gtgttctagt
     2221 aagtttactc gaagaagaag gattaatcca ggaagcatat gtagaagaat ttaagagatt
     2281 tgttaataga tttgcaaagg gtatagaagt ttcaagcgaa ctagcgccca tgataaagca
     2341 atatttaact gatcagaaat tagaaaataa aactagaaat gtatcaaatg ttcttcctat
     2401 tagtattata tcatcatcca tttttatcgg atcaacgttt atctttcctt atgaaaggat
     2461 tttctcttat cttggttttg cattatctgc agcgttgttg attggtactt ttatatttaa
     2521 taaattgaat agaaaatgat atgcggcatt aattcgttac ttcgtataat ctcagacctc
     2581 agcctataat cttcaccttt accgtacagt ctaatttcga gatagtaaca agagtatcgc
     2641 aagccaattt ttattattat ttttttcaga tagaattaaa ctccatatga taacctgtct
     2701 ttaaggatag ttgttaattt ccagttcatt ttttctaaca tttgtatgtc tcatagtcca
     2761 gcgtcattta atggaaaata gtgcagaatc tatgtacaca ataattttag gagatgatcc
     2821 atccaagttc atataaacta atactaccgt aagaaagtga tgaatctaag ttcaaagacc
     2881 gtacttattc cgtcaatagt ctgattgatt ggaacagtac taggtaccag cgcaacaaac
     2941 gcattcgcag atgacccatt caaaaataaa gtaaatattg acacgcaaca agataataca
     3001 aactcatgtg acgagagtca acaaggggaa aataattcgg attgcgagat cacggatacc
     3061 atggtgactg atccatttat aatagaaggt gacgagaaca aaatattact cgacttcgat
     3121 gagaataaca aaaacgattg tgatgagagt ggagacggag ataacaacag tgtctgcaca
     3181 atcacagata caaaggttat cggaccaata gacattctgg cgacaccacc atagaataaa
     3241 gcaactatac tatcatagca gtagtgaact actccacttt tttattctat tttttcacct
     3301 aaaacaatct tgagtagatt tatatttaaa tgaccttcta cctttatgaa tgaaactatt
     3361 acacggaagt ccaggatttg gtgttcaact ttcacagaat gaaatagcaa aatttctatc
     3421 ggatagcaag ttaaatctcc atcttggaac cattgattcg gatgactatc cgaacgtaca
     3481 tcctacgtgg tatctttatg ataattctaa agatgtaatt tttgtagaaa caggaaaaca
     3541 atctaaaaag accaataact tgaaaaggaa cgataagatt tatttttgta tagatgaggg
     3601 aaatcctcca tataaaggcg taaggggtaa aggtgatgtt aaaatattaa acaatcccga
     3661 taccaatctt ccaataacag aaagaataat gttgaaatat cttggtagta ttgatcatcc
     3721 tatggcaaaa atattacttg aaaacgtaag aaatggaaat tcagtaatat tggaaatcaa
     3781 accaaaatat tactctacat gggactatag tagaaatagc tgaatgctct attcaagttt
     3841 atgcctttag gaacagtgca attatttagt gataccaaag ataactcctc ctgctacttt
     3901 ttagcagggt taggttaaat tttaatcaac tattggtgac ttaagatcaa tttcaagaac
     3961 tttaataaaa tatctgaatc atttgatttc gcaatctcca aactcgtgat caccatcggc
     4021 aagattaaaa tttgttatcc tgtcctcgcc agatccacat ctatagtagt cgcccccctg
     4081 tccaccactt agagtatcat ttccttgacc tccataaagt cgatcgtcgc caggaccacc
     4141 atcaagaatg tcattattgg aggcaccata caaaatatca ctctctattc caccaactag
     4201 tctatcggga tcatctcctc cctggagctc atcactacct acgcctccat caagaacatc
     4261 agtcccatct ccaccagaca gataatcatt tccatcagag ccattcaaaa tgtcattacc
     4321 gccctcacct tgaatttcat cactgcctga tagtccattc aaaag
//
LOCUS       DASUMD010000113         2131 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1242568, whole genome shotgun sequence.
ACCESSION   DASUMD010000113 DASUMD010000000
VERSION     DASUMD010000113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2131)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2131)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2131
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1242568"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..534
                     /locus_tag="VFX26_03195"
     CDS             <1..534
                     /locus_tag="VFX26_03195"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HEX5573513.1"
                     /translation="KRSRKFSIGRYTPVLSVSILVLSLISIPAFAQQTNFIASLSGQD
                     MSPTVSTSATGTAKFNIESDGNMAYQIDSRNLNGVIGAHISLKNGTDLAQVFNSYMEI
                     NGKSGIPTGEVNGQLSKGVITSSDLSGPLAGKTVTDLTNLMKNDSVYVVVRTQGHENG
                     EIQGVITPSNTGYTQGL"
     gene            complement(587..985)
                     /locus_tag="VFX26_03200"
     CDS             complement(587..985)
                     /locus_tag="VFX26_03200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573514.1"
                     /translation="MFRQITVVLVATLVFTVLLTTNNSFAKEVECADTFTDMDWDPKN
                     HEPNDPSTKEFELLAYQGSLCELTKCIDHEECTNRDAVEWEKFKSSPAYEMSYEDQKE
                     CLETAQDDGNGKDGLVGYEIMSCGLGEDRY"
     gene            1770..>2131
                     /locus_tag="VFX26_03205"
     CDS             1770..>2131
                     /locus_tag="VFX26_03205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573515.1"
                     /translation="MKFLTVQRKIVINTIVAVLTVASIIIVFVEYLFPLSLEQIWTMY
                     GFDLIVTSILAADFASRLKSSNTRLKFIIGHWYEFPAMIPLVVYATADSTSIVQGSIG
                     TLRYLALFRLVRLYNLAY"
BASE COUNT          648 a          381 c          381 g          721 t
ORIGIN      
        1 aaacgatcaa gaaagttttc tattggcaga tacactcctg ttctgtcagt cagtatattg
       61 gtcctgtcat taatatcaat accagcattc gcacagcaaa ccaatttcat agctagctta
      121 tctggccaag atatgtcacc gacagtaagt acaagcgcta ctggaacagc taaatttaac
      181 atagaatctg atggaaatat ggcttaccag atagattcaa gaaatctaaa tggggtcata
      241 ggggctcata ttagtctcaa gaacggaact gacttagcac aggtattcaa ttcttatatg
      301 gagatcaatg gaaagtctgg aattcccact ggtgaagtga acggccagtt atcaaaagga
      361 gttattacat ctagtgatct tagcggtcca cttgcaggca agaccgttac ggatttaacc
      421 aatcttatga aaaatgattc agtatacgtt gtcgttcgca cccaaggtca tgagaacgga
      481 gaaatccaag gagttattac tccttcaaat actggttaca cgcagggcct ttagttagag
      541 ttttctaaat taggtaattg agaatatcag atttaagtca atttacttaa tacctgtctt
      601 ctcctaatcc gcaggacatg atttcgtagc caactaaacc atcctttccg ttaccatcgt
      661 cttgtgccgt ttccagacat tctttctgat cttcataact catctcatag gctggtgagc
      721 tcttgaactt ttcccattcg acggcatcgc ggtttgtgca ttcctcatgg tctatgcact
      781 ttgtgagttc gcatagagaa ccttgatatg ccagtaactc gaattcctta gtggatggat
      841 cattgggttc gtgatttttt ggatcccagt ccatatcagt gaaagtatca gcacattcaa
      901 cttctttcgc aaatgaattg ttcgttgtta acaatactgt aaatactaat gttgcaacta
      961 acacaacggt aatctgccta aacacaaatc tttttgggaa tttacactta ataaatctta
     1021 ttttctttgg gatatttgat accttttaat ttaatttaat atctatagag aggagcgtag
     1081 cgaaaatgga tgaatttttg atgtatgttc tggttagaaa ttctaaataa tacaagttta
     1141 ttagatcaaa attctaaatt tatctctatt agtgttttca atacgttact ttatgtagat
     1201 acaattcaaa caattcatca ggttttgatt cacttggtat taagtttata ctttcagtcc
     1261 tcctttggta tcaattgggt tctcattatc caaatctaac agattattga aaaataaatg
     1321 cgaatgactt ggacttgtat gaactatcat aatacaagaa caaatagagc aataacaaat
     1381 cattctaaca ttgaaaattg cgctcaaaat atggtgggca ggaaggatta tagacaaatt
     1441 ggtcactcag atatgatttc attcatccaa agactgaaat tctaaacggc tatattggga
     1501 gcgggatttg agccctcaat tcgtattcgt atttgtgata cttcataaaa ccactgatag
     1561 cagttgttga aggtaatgtt tgtggtttca taatcgtcat tcgaaattat ttcatgtgta
     1621 atgttggtat gtcgcatttc atcttaaatt catgatatgg aaactttccg tccagtagtc
     1681 tcttccgctc tcaatatgaa aattaagcgt tcagactcca gtttgttttt ttaactttat
     1741 tatttagtgc tggatcttag taactagtta tgaaattttt aaccgttcaa agaaagattg
     1801 taataaacac cattgttgca gtactgacgg tcgcctctat aattattgtt tttgttgaat
     1861 atctatttcc attaagtctc gaacagatat ggacaatgta tggttttgat ttgattgtca
     1921 ctagtatatt agctgcagat tttgcatcaa gattgaaatc atcaaataca agactcaaat
     1981 tcatcattgg ccattggtat gagtttccag caatgatacc gctagttgtt tatgcgaccg
     2041 cagacagtac gtctattgtt caaggttcga ttgggacttt aagatatctt gccctcttta
     2101 ggctagttag actatacaac ctagcataca t
//
LOCUS       DASUMD010000114         4773 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1022689, whole genome shotgun sequence.
ACCESSION   DASUMD010000114 DASUMD010000000
VERSION     DASUMD010000114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4773)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4773)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4773
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1022689"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            39..383
                     /locus_tag="VFX26_03210"
                     /pseudo
     CDS             39..383
                     /locus_tag="VFX26_03210"
                     /inference="COORDINATES: protein motif:HMM:NF019928.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
     gene            463..882
                     /locus_tag="VFX26_03215"
     CDS             463..882
                     /locus_tag="VFX26_03215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020266909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="secondary thiamine-phosphate synthase enzyme
                     YjbQ"
                     /protein_id="HEX5573516.1"
                     /translation="MKVLSENIQIHSEGEGDMIDITEQLSNAVKESNIENGNVTIFVS
                     GSTAAITTIEYEPGLIHDFPEMLSRIVPKNIEYKHDNTWHDGNGHSHIRSSLIGPSLT
                     IPIIHRKLTLGTWQQVVLLEMDTRSRNRTIILQIMGE"
     gene            complement(954..1820)
                     /locus_tag="VFX26_03220"
     CDS             complement(954..1820)
                     /locus_tag="VFX26_03220"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042578 - phosphoric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase family protein"
                     /protein_id="HEX5573517.1"
                     /translation="MIKIQYVLYPLLLMIFVTLFVSLSFSQVVTNQSTANSSMINGGK
                     KNDSSTTVINAVGDIDCSNRLDDQVKEDNPDLLIVLGDLCYKSDLTDFKAIYGDFKTD
                     NKLACIIGNHDSEEDGTPRLENKTIEYCGDHWYRKIANDTTLLIGLNTNGDTESQTKW
                     GQSLVTNGTLMKGIKNVMLLAHKPAHTPESHHPARNSTIKMVLGIESNISKSIEVYEI
                     SAHNHIMAESSNGRWFISGAGGKSHYEGMSSSEWPFVNTKSYGHLQIRINNTDGNVLG
                     TNFYGLNGRLIH"
     gene            2258..2506
                     /locus_tag="VFX26_03225"
     CDS             2258..2506
                     /locus_tag="VFX26_03225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573518.1"
                     /translation="MNVTDLDSTIQIDAKLCGTFHRKKIAYSIMDYHHSLYINKKDII
                     LGQIRACELLYKYTIKDLDKNVLKKEMLDLKLMLDLIE"
     gene            complement(2611..4173)
                     /locus_tag="VFX26_03230"
     CDS             complement(2611..4173)
                     /locus_tag="VFX26_03230"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX5573519.1"
                     /translation="MTEPYNGNNDENTASPSLNEKVPRKAWMSLAILGSTLLIAMYGE
                     TMLLPAIPDIIEEFDISYNTSSWILSAYLIAGAVATPLCGKLSDIYGRKKMIIIILII
                     YIIGITLGGLSTNIAFLIVARVIQGIGISMFPIAFGIIRDQFPKDKLAIGVGVFSSMF
                     AAGSVVGLALGANIIENFGWRATFFSIVFVAIGLWFIIRRYIHDEQESVNAIESQEIH
                     YSSDTVDNKINDPDEEFTTSISKKNIDMKGTVTLAITIISLLMVLSYSHTDNIEIYQI
                     GIFLFIGITSLVLFVIVERRSRSPLVNFQLLTNNTILSANIILVIAFLSMFTVFQTIP
                     VLVRSPQPFGFGESVITTANIQLPFMIVFLLFAPSSGFIISKLGNVKPTIIGSIVSAV
                     GFSSLLIFHSNGSLVATNLAVIAGGLSLMQVGGFDIVLQSTPRKFSGISLGMTVLFTL
                     IGGSVGPAMAGIIMQANQVFLEGVGSYPSSDSYNLIFLTIALASLIPIALSIFIRRNL
                     SSQNSALTIGVS"
     gene            complement(4430..>4773)
                     /locus_tag="VFX26_03235"
     CDS             complement(4430..>4773)
                     /locus_tag="VFX26_03235"
                     /inference="COORDINATES: protein motif:HMM:NF015909.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="polyphosphate kinase 2 family protein"
                     /protein_id="HEX5573520.1"
                     /translation="IMLVENNVKILKFYLHISKQEQKKRLLERLSDPEKQWKVAEDDH
                     KKRKKWVEYMNAYTDAISNCSIKEAPWYVIPANKKWFRNWAISKIITNTLIEMKIRYP
                     KSSPRHKNMKI"
BASE COUNT         1608 a          819 c          799 g         1547 t
ORIGIN      
        1 tttattgaac ttatgctcaa taatcaaact ggtttccaga tattgccgaa ttggaaaagt
       61 gggaaggagg aagagcatct tttaaatttt tgaaatctga caagaacaat cttgacaggg
      121 atcatgaaat gaatggcaaa attattaaat tcattccaaa taaggaatta tcatatactt
      181 ggcaatttca aaacatgcct gactttagta ctactattaa agtaacatgg agatttgaat
      241 cactaggtaa aaacaaaaca aaagtcatcc taatgcatag cggtttcact gatgatgata
      301 gagaaaacta taacgaacat tcacaaggat ggagatggtt tgttaacagg ttgggaaatt
      361 atttaacaaa aggcgaacca tgataggtaa taaattagca tctagtaaca accatatatt
      421 acacttgcat aaatagtata atacaggtga aatctaccta atatgaaagt tttatctgag
      481 aatattcaga tacattctga aggagaaggt gatatgattg atatcactga acagttatca
      541 aatgcagtaa aagagagcaa cattgaaaat ggaaatgtta ctatttttgt ttcgggatct
      601 acagcggcaa ttacaactat tgaatatgaa ccaggactta ttcatgattt tccggaaatg
      661 ttatctagaa tagtcccaaa aaatatagag tataagcacg ataacacttg gcatgacgga
      721 aatggtcatt cccatatacg atcatcgctt ataggaccta gcttaactat tccaatcata
      781 catagaaaat tgacactagg aacttggcag caagtagttt tgttagaaat ggatacaaga
      841 tctagaaacc gaactattat tttacaaatt atgggcgaat aaggaaagga agatcaaaac
      901 taggaaaaat cttttacata tatttatcca tcaatattgt ctagaatgat ttttcaatgg
      961 atcagtcttc cattcaatcc gtagaaatta gtgccaagta cgttgccatc tgtattattt
     1021 attctgattt gtaggtgtcc ataggattta gtgttcacaa aaggccattc tgagctgctc
     1081 attccttcat aatggctttt accaccagcc ccagaaatga accagcgacc attacttgat
     1141 tcggccatta tgtgattgtg tgcagaaatt tcataaactt caatgctttt tgatatatta
     1201 ctttcaatac ctaataccat tttaattgtt gaatttcttg ctggatgatg tgactctggt
     1261 gtatgtgcag gtttatgagc cagtaacatg acatttttga ttcctttcat caatgttcca
     1321 tttgttacca atgattgtcc ccattttgtt tgtgattcag tatctccatt tgtatttaat
     1381 cctattagta atgttgtatc atttgcaatt ttacgatacc aatgatctcc acaatattct
     1441 attgttttat tctcgagtct tggagtccca tcttcttctg aatcatgatt gccaattatg
     1501 caagccaatt tgttgtctgt tttgaaatca ccataaatag ctttaaaatc agttaaatca
     1561 gatttatagc atagatcccc tagtacaatg aggagatcag ggttatcctc tttaacctga
     1621 tcatcgagac gattagaaca atctatatca cctacagcat taattactgt cgtacttgag
     1681 tcatttttct taccgccatt aatcatggat gaattagcag tactttgatt agtaacaact
     1741 tgtgaaaatg aaagagagac aaaaagagta acaaaaatca ttaataataa tgggtataat
     1801 acgtactgaa tttttatcat tatctatttc aatcctgggt ttttgataat aaagcctttt
     1861 ggtacgaaca tataatctta ggcattatct atttcaatcg tgggtttttg ataataaagc
     1921 cttttggtac aaccatataa gtgacgaaca ataactcaat acaaccatat attcaatata
     1981 gttcaaaatg atccatgaga tcaatattca taatcctaat aggagtaatt cggctgtctc
     2041 ttggtatgtt caagaagaat tcttgtagta tgtgcggttc tattttgata ccgtccgcac
     2101 tctgcaaaat atgtaaagag tccgttaaat ggacttgtta taaatgtgat aaaatagagg
     2161 aaattaagca ttcagattat tattgtacaa tttggatggg cagaaggtta ggatttggat
     2221 tagaagatcc aattggtttt gggatgataa taaacagatg aatgtaacag accttgattc
     2281 cacaatacaa attgatgcga agctatgcgg gactttccac aggaaaaaga tagcgtattc
     2341 aattatggat tatcatcatt cgctttacat taacaaaaag gatataattt tgggacaaat
     2401 ccgtgcatgt gagctccttt ataaatacac tattaaggat ctggataaga acgttctaaa
     2461 gaaagaaatg ctagatttaa aattaatgct agatctgata gaatagtcat attaagaaag
     2521 taaattagta gaaatatttt attactttct tgttggatat gctacttatg ttatttctga
     2581 ctagatttga ctaaacagtc aatctatcaa ttatgatact cctatcgtta aagcggaatt
     2641 ttgtgaggat aagttccttc ttatgaaaat tgataatgct attggaatca gtgaagctag
     2701 agctatagta agaaatatca agttatacga atcagaagag ggataggaac caacaccctc
     2761 caggaatact tgatttgcct gcatgataat gcctgccatg gcgggtccaa ctgaaccccc
     2821 aatcaaagta aagagaacag tcatgccaag agatattccg ctaaactttc tcggtgtaga
     2881 ttgcaggaca atatcgaatc cgccaacttg cattaatgac aatcctccag caattactgc
     2941 caaatttgtc gcgactaaac tcccgttcga gtggaatatg agtagactag aaaagcctac
     3001 agcacttact atacttccaa taatggttgg ctttacgtta cctagtttag aaattataaa
     3061 gccagaagat ggagcaaata acagaaacac aatcataaat ggaagttgaa tatttgcggt
     3121 tgttatgacg ctttctccaa atccaaatgg ttgaggactc cttactagca caggtatagt
     3181 ttgaaaaact gtaaacatag acaggaaggc aataactaga atgatattgg ctgaaagaat
     3241 ggtattatta gtcagcaact ggaaattaac caatggtgat cttgatctcc tctctactat
     3301 gacaaatagt accaatgaag taatgcctat gaataagaaa ataccaatct gataaatttc
     3361 gatattatcc gtatgtgaat atgacagaac catcagtaac gaaattatcg taattgcaag
     3421 ggttaccgta cccttcatat ctatattttt cttactaatg ctagtcgtga attcttcatc
     3481 aggatcattt atcttattgt caacggtatc agaagaataa tgtatctctt gtgactcaat
     3541 cgcgttcaca gattcttgct catcatgaat atatctcctt atgataaacc ataatcctat
     3601 ggcaacaaat acaattgaaa aaaacgtagc tcgccaacca aaattctcta ttatattcgc
     3661 ccccaatgct aaaccgacca cagaaccagc ggcaaacata gagctgaaca cacccacacc
     3721 tatcgcaagt ttatcttttg gaaactgatc tcgaataatt ccaaatgcaa ttgggaacat
     3781 agagatgcca attccttgga ttactctggc aactatcaga aatgcaatat tagttgaaag
     3841 tcctcctaaa gtaattccaa taatatagat aatcaatatg ataattatca ttttcttcct
     3901 accatagata tcagagagct ttccacagag cggtgttgca acagcccctg cgataagata
     3961 tgcagaaaga atccatgagg atgtattgta agagatatca aattcctcga ttatatcagg
     4021 tattgcaggc agtaacatgg tttcaccgta catagcaatc aatagtgtcg aacctaaaat
     4081 cgctaatgac atccaggctt ttctaggaac tttttcattt aaggacggtg atgccgtatt
     4141 ttcatcattg ttaccattat atggttccgt catttcaatt caaatcgtct ttatatggtg
     4201 ggtgtataca tctttttaat gtatctaatt aatttgaatc aacactctaa ttttgagaag
     4261 ccgtattatg aataacaaag tcaaggacag tcatctctac tgatgccgat ttactaacga
     4321 aatgttgtat agagtaaaaa attttgtagt cctgccggct tataaccttg aatcttacat
     4381 gactgtcata tcactaccta aaatacagtt aatatttaga aaaacatgcc taaattttca
     4441 tgtttttatg acgaggagaa gatttagggt atcttatttt catttctatc aacgtattag
     4501 tgattatttt tgatattgcc caatttctaa accatttctt gtttgccggt ataacatacc
     4561 aaggcgcctc ttttatgcta caattactaa ttgcatccgt ataggcattc atatattcta
     4621 cccatttttt tcgcttttta tgatcgtcct cagcaacctt ccattgcttt tctggatctg
     4681 acaatctctc aagaagtctt tttttttgct cttgcttact tatatgtaaa tagaacttca
     4741 atattttcac attattttct actagcatta ttt
//
LOCUS       DASUMD010000115         4435 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_690789, whole genome shotgun sequence.
ACCESSION   DASUMD010000115 DASUMD010000000
VERSION     DASUMD010000115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4435)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4435)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4435
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_690789"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..220)
                     /locus_tag="VFX26_03240"
     CDS             complement(<1..220)
                     /locus_tag="VFX26_03240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573521.1"
                     /translation="MFPYIRKILLGPDKYLILNVKIHIRLTLIIYMYDSFHENNPRSD
                     KDRPIPTIRPVIRSDEQLKVLQDIISSPR"
     gene            411..773
                     /locus_tag="VFX26_03245"
     CDS             411..773
                     /locus_tag="VFX26_03245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEX5573522.1"
                     /translation="MAKIIKKNLNIAPDETRKFEMGKVDIATFSDVTIGRAEFEPGWS
                     WEKCVKPIAKTKSCEAPHTQYVVSGRMKVVMDDGTEEEFGPGDVGIVPPGHNAWVVGD
                     EKCVAIDFTGMTTYAKNQ"
     gene            complement(1009..1908)
                     /locus_tag="VFX26_03250"
     CDS             complement(1009..1908)
                     /locus_tag="VFX26_03250"
                     /inference="COORDINATES: protein motif:HMM:NF012703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginase family protein"
                     /protein_id="HEX5573523.1"
                     /translation="MLLHRQPEFSVIDAPCILGLRPTGVELLPKALRTAGLLKQLKAD
                     YVGMVAPSSAYNYKRDDGTGLLNPQAIKDYTLKLAEAVNGQLRKNKFPIVIGGDCSIL
                     IGNILALRRLGRYGLFFIDGHSDYYLPEESSTGEVADMDLAIVSGHGPDILCDLDHLK
                     PLVMEQDIVAFGYRDSAQSAQYGCQDIKNTTMVNAIELVDVQRLGLQNAASLGIETLL
                     KNELSGFWIHLDADVLNDSIMPAVDYRLPGGISFSELSNLLKLLLLSRKAVGISVAIL
                     NPTLDKDGSITRNFVSCIAEGLS"
     gene            complement(2089..2283)
                     /locus_tag="VFX26_03255"
     CDS             complement(2089..2283)
                     /locus_tag="VFX26_03255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573524.1"
                     /translation="MSLDTAWSGILKKEATGIDDCDLGEVQQIEKDFIVTEKGIINKK
                     RYCISKNLIAGFDGHTLYLK"
     gene            2823..4382
                     /locus_tag="VFX26_03260"
     CDS             2823..4382
                     /locus_tag="VFX26_03260"
                     /inference="COORDINATES: protein motif:HMM:NF018455.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase domain-containing protein"
                     /protein_id="HEX5573525.1"
                     /translation="MIERISTGIASLDALIEGGIPRGFTVLVAGNPGTGKTILTTQFL
                     YEGLLKGESALYVSFSESKNQFYENFSRFGMKLADFERDNKFAFLDFASVTKEGIGDA
                     LEEVLAVSKSIKAERIVIDSFSAIILAFDNINEARITLHVVLGKMLRAEGITNMLITE
                     VPIGSQNVGSGMEEFVADGIIQLEHGTTDAIPATLKVVKMRGTTINREAHVSLVGEKG
                     MVVYPKQPIRMTDASTIDRLKTGIPGLDERVEGGFLKGSTSILAGASGAGKTTFGFQF
                     TVQAVLDGKPSLFCSLEESPAEIRNMGKSLGFNMKELEKKGLHLISWMPENQSPDAFI
                     SELASHIEAIRPSRIVIDGLSTFEHLYSQEMYLITKRLVNLTGSYGITSVFTILTDQE
                     SGLNISSFGVSSIFHNIILLRYVEAEAQLKRSMLILKMRASNHDQSILQFLIQNKTGL
                     KIAGTMSEYEGIMSGIAQKVYQRYLDKEKKIEDKQSKEREKRKADLDSRQKKFSRIGE
                     KARLRRRQRRS"
BASE COUNT         1431 a          787 c          860 g         1357 t
ORIGIN      
        1 ttctgggact tgagataatg tcttgaagaa ctttgagttg ctcgtcagat ctaatcactg
       61 gtcgaatagt tgggattggt ctatctttgt cactacgtgg attattttca tgaaaagaat
      121 catacatgta tatgataagc gttaatcgta tatgtatctt tacatttagt atcagatatt
      181 tatccggtcc taataggatt tttctaatat atggaaacaa aagcttattt ctgaatatgt
      241 gggtcacttt tggacaaatg ttagaactga atttacaggt ctgggcccgt ccggattagt
      301 tccattcatg tagaagggtt ctactacttg ttatttagtt gcttctaaac tctggcaaag
      361 gagtttaaaa atacttaata attatgaaat cgtgtaagag ctgaaattca atggcaaaaa
      421 ttattaaaaa gaatcttaac atcgctccag atgaaacgag aaaatttgaa atgggtaaag
      481 tagacatcgc aacttttagt gatgttacga taggaagagc agagttcgag cctggctgga
      541 gttgggagaa atgcgtaaaa ccgatagcaa aaacaaaaag ttgtgaggca ccacacaccc
      601 aatatgtggt atctggaaga atgaaagttg ttatggacga tggcacagaa gaggaatttg
      661 gtcctggtga tgttggaatt gttccaccgg gtcataatgc gtgggtcgtt ggagatgaga
      721 aatgtgtggc aattgacttc acaggtatga cgacctatgc aaaaaatcaa tagctaaatt
      781 ttcaaattcc catatttttt caattcaaga taccgaagat accgaatcta actagaaatc
      841 ttttgtttgt tactataaat aagacctaga aaacacaaat atatgtaagt cctcgggctg
      901 tcggaatttg aaccattcat gtagaagggt tctactaact tgatatttat ctttacgggt
      961 aacagtgcaa tttagttcta aaataaatat catataggcg aacacctctc aggacaatcc
     1021 ttctgcaatg catgacacaa aattcctagt aatagaacca tctttgtcaa gcgtaggatt
     1081 aaggatcgcg acactgatac ccactgcttt cctagacaat agtagtaact ttagcaaatt
     1141 acttaattct gagaagctga ttccaccagg aagacgataa tcaaccgcag gcataattga
     1201 gtcattcaag acatcagcat caagatgtat ccagaacccg gaaagttcat ttttgagaag
     1261 ggtttcgatg cctaaactag cagcattttg caatcctagc ctttggacat ctacgagttc
     1321 tatggcattt accatcgtag tgttcttaat atcttgacat ccgtactgtg cagattgtgc
     1381 tgaatcacga taaccaaagg ctactatatc ctgttccatt actagtggct tgagatggtc
     1441 caaatcacaa agaatatcag gaccatgacc ggatactatt gccaaatcca tatccgctac
     1501 ctcaccagtc gaagattctt ctggtaaata ataatcggaa tgtccatcaa taaaaaatag
     1561 cccgtatctg cccagtcgcc tcaatgctaa aatattacca attaagatac tacaatcacc
     1621 tccaatgact atagggaatt tatttttacg taactgtcca ttcacagcct ctgctaattt
     1681 tagtgtataa tcttttatgg cttgaggatt taacagccca gttccatcat cacgcttata
     1741 attgtaggct gatgatggag caaccattcc aacgtaatca gcttttagtt gtttaagtaa
     1801 tcctgctgtc cgcaacgcct ttgggagaag ctcgacgcca gttggccgta accccaatat
     1861 gcaaggagca tcgatcactg aaaattctgg ttgcctgtgc aataacattt cgctttacta
     1921 aataggatat atcattttcg tttcaacttt atagaattat gttaacgagt ctggccttgt
     1981 catggcataa ggctcggtca taaagtaggt tcactattga gtgatcgctt tttaacaact
     2041 tttcagtgct tcaaatcatc cgccgaaatc gttttgattc ttctttcatt attttaaata
     2101 gagtgtatgt ccatcgaaac ccgcaataag attctttgat atacaatatc tcttcttatt
     2161 aataatacct ttttcggtaa caataaagtc tttctcaatc tgctgaacct cacccaaatc
     2221 acagtcatct attccagttg cctctttttt aaggatacca ctccatgctg tgtctaggct
     2281 catggatgta ttactgcaat atttcttata tcaatttatt attactcaat attggaattg
     2341 aaattttctc aactacgagt caatattttg attcttaata gaaattcata atattgaata
     2401 tactcattcc tgtcttagca atgttaagat tttccttaga tactgcccaa ggaattgaat
     2461 aattacctgc agaatctaac attctgagaa aacatcctag agatatataa caatcttata
     2521 gaaaaattaa gaatgtctaa aaaggtatat atattttgtc agacattata atattgctta
     2581 aacaccagct ggggttggtt gtttcttgtt catcatcaac taatcccagt tgtttatgtt
     2641 tatcttggct atatacagaa tataaataaa tttagatttt tgaagaaatg actgatatgc
     2701 gatctaatta ataattactt ttttgtttac aattttcgtt gctgaaactc tactctaata
     2761 ggtatttctt atctctaagc tagaaaaatc ttatattagt tacgaattat cgatcaaaca
     2821 tattgataga acgcatctcg acaggtatcg ctagcttgga tgcgcttatt gagggtggaa
     2881 taccaagagg ttttacagtt ttagtggcag gtaatccagg cactggtaag actatactta
     2941 ctacacaatt cctatatgaa gggcttttga aaggagaatc agcattatac gtttccttta
     3001 gcgagtcaaa aaatcagttc tatgaaaatt ttagcagatt tggaatgaaa cttgcagatt
     3061 tcgagagaga taataaattt gcattcctag actttgcttc agttacgaag gaaggaatag
     3121 gggatgcact cgaggaagta ttagctgtta gcaaaagcat caaggctgag cgaatagtta
     3181 tcgattcttt ttcagcaata atacttgctt ttgataacat taacgaggct agaattacct
     3241 tacatgtagt tttagggaaa atgttgagag ctgagggcat aacaaatatg ttgataactg
     3301 aagttcccat tggaagccaa aatgtgggat ctgggatgga agaattcgtg gcagatggca
     3361 taatacaact tgagcatggt actactgatg caatcccagc gactttgaag gtagtaaaaa
     3421 tgaggggtac cacaataaat agagaggctc atgtctcgct cgtcggagaa aaaggcatgg
     3481 tagtctatcc caaacaaccc atcagaatga ctgatgcatc gacaattgat agactcaaaa
     3541 cgggaattcc gggtctagat gagagagttg aagggggttt tttaaaaggc agtacaagta
     3601 tattggctgg agcatctggc gccggtaaaa ctacctttgg attccaattt actgtacagg
     3661 cagttcttga cggtaaacct agtttgttct gttcacttga agaatcaccc gctgaaatta
     3721 ggaatatggg taaatccctt ggatttaata tgaaagagct ggaaaagaag ggactccact
     3781 taatctcatg gatgccggaa aatcaaagcc cggacgcatt catttctgaa ttggcttcac
     3841 atattgaagc tataagaccc tctcgcatag taattgatgg cttgtctaca ttcgagcatt
     3901 tgtatagcca agaaatgtac ttgattacga agcgactagt taatttgacg ggaagctacg
     3961 gaataacttc agtgtttacc attcttacgg accaagaatc agggcttaac atcagttcct
     4021 ttggcgtatc ttctattttt cataacatca tccttctgcg atacgtagag gcagaagccc
     4081 aattgaagcg gtcaatgttg atactcaaaa tgagagcttc taatcacgac caatccattt
     4141 tgcaattttt gattcaaaat aagactggac tcaaaatagc aggtacaatg agtgagtatg
     4201 agggtatcat gagtggaatt gcccaaaaag tctaccaacg ctacttggat aaagaaaaaa
     4261 aaatagagga taagcaatcc aaagaacgcg aaaaaagaaa ggctgattta gattctcggc
     4321 agaaaaaatt ttccaggata ggggagaaag caaggcttcg caggagacaa aggagatctt
     4381 agttgttatt atgaaaacag tatcaagaaa cctagctatt attgtaattc tatca
//
LOCUS       DASUMD010000116         3602 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_27129, whole genome shotgun sequence.
ACCESSION   DASUMD010000116 DASUMD010000000
VERSION     DASUMD010000116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3602)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3602)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3602
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_27129"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..337
                     /gene="nuoB"
                     /locus_tag="VFX26_03265"
     CDS             <1..337
                     /gene="nuoB"
                     /locus_tag="VFX26_03265"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoB"
                     /protein_id="HEX5573526.1"
                     /translation="GPRYDVERFGIIEAFGSLRQCDLIVVQGTVTRKMAPRLRMVYDQ
                     MPDPKYVIAMGACAITGGLYIDSYNVLPGVDGIVPVDVYVPGCPPRPETLIQGCMLLQ
                     EKIKRSKIR"
     gene            338..910
                     /locus_tag="VFX26_03270"
     CDS             338..910
                     /locus_tag="VFX26_03270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HEX5573527.1"
                     /translation="MSSNQSNTQNGSEQKKNVTDSTQTSLSKKTEITIPEFESSIVNQ
                     LVTKFTDKIVQVVYVRPGRTKILVPPNEIVHVATFIRDTLGFDHAESVSGTDYPKDNQ
                     IEVIYHLSSYSDEKLSSHVLALSTRVDRNDSRLPTLIDIFKSAEYHERETFEMLGVYF
                     EGHPRNERFLLPEDWADIPPLRKEFRIKGR"
     gene            921..2081
                     /locus_tag="VFX26_03275"
     CDS             921..2081
                     /locus_tag="VFX26_03275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit D"
                     /protein_id="HEX5573528.1"
                     /translation="MENFEQKFDETIKRGLEIVKETEEDRLMTLSVGPQHPGSGHFRF
                     TIKVDGDYIVYCDPDPGYVHRGEEKMCEYRNFIQNIPHLERPVIHDSTNITYSYSLAV
                     EELTNIQVPLRGQYIRALASELNRQVYTLYWLGIYGIFLGHSTMFMWPVGDRELFIDL
                     LEALTGARVTHAFNIPGGVRNDMPEGFKDRCLRQVAYFEKRLVEYEDIFYNNPLFRQR
                     TEGVGILTKEDAIKLGVTGSVLRASGIPFDVRKAEPYDVYEEIDFKIQYMKTCDSYAR
                     SMVPFLDMKESCHIIRELLDKMPQSGEVRAKLQPNPKGPAGESYKRVESGRGALGYYI
                     VSDGTPKPYRVKLSVGSFRNMLALPFLLIGSKLADMPSIYWSLNYWPVEADR"
     gene            2182..3447
                     /locus_tag="VFX26_03280"
     CDS             2182..3447
                     /locus_tag="VFX26_03280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="complex I subunit 1 family protein"
                     /protein_id="HEX5573529.1"
                     /translation="MATAPKDFRFGNFVGSLIQLILWIIVIVTLIGLPLIFIILFYVP
                     LPPVNDEVLTPYLFFSMMVDPTRTVPIINFLIHTDLFRVAVFPGFTYAALLAAATIFI
                     ERKFLAKMQLRIGPLYAGKIEGILQLIADGLKLISKEIIVPSGADKLIFWTAPVAFVV
                     TSAAVVSLVPAAPGWVVADLDVGIIAVFAFLGFFPLIALLFSWASNSKYPFIGGLRAL
                     HQMIAFEIPFILSALSVVILAGSLNLTDIAEAQHPYWFILFLPISAFVFYISSLAELE
                     RIPFDLPEAESEIVAGWLTETSGMIYGLIQLGTYIKLYVLAALFVILFLGGWSGPQIF
                     PEEIIPGYTGDKIYNATTVNAVFWFTIKTLGMIMLVLLPRGINPRIRIDILLHTGWYK
                     LIVLAFINIFVALSLVYGGILGPGGLLST"
BASE COUNT         1114 a          628 c          772 g         1088 t
ORIGIN      
        1 aggtcccaga tacgatgttg aaagatttgg aataattgag gcatttggtt cattacgaca
       61 atgtgatttg attgttgttc aaggcactgt aacaagaaag atggctccaa ggctaaggat
      121 ggtttatgat cagatgccag acccaaaata tgttatagcc atgggtgcct gtgcaattac
      181 aggaggactt tatattgatt cttataatgt gctaccaggt gtagatggaa ttgtccctgt
      241 tgatgtgtat gtacctggct gtccaccaag acccgaaacc cttattcaag gatgtatgct
      301 gctccaagaa aaaataaaaa ggtcgaagat cagataaatg agctcgaatc aatccaacac
      361 acaaaatggt tctgagcaaa aaaagaacgt aactgactca acacagactt cattgtcgaa
      421 aaaaactgaa attacaattc cagaatttga aagtagcatt gtcaatcagt tagttacaaa
      481 atttacagat aaaattgtac aagttgttta tgtacgccca gggagaacaa aaattcttgt
      541 tcccccgaat gagatcgttc atgtagctac attcattaga gatactttag gatttgatca
      601 cgcagaatct gtctcaggga cggactatcc aaaagataat caaattgagg taatttatca
      661 cttgagctcc tattcggatg aaaaactttc ttcacatgtt ttggccctgt caacaagggt
      721 agataggaac gattccagac tgcccacatt aattgatatt tttaagagcg ccgagtatca
      781 cgaaagggaa acctttgaaa tgcttggagt ctattttgag ggccatccaa gaaacgaaag
      841 atttttactt ccagaagact gggcagatat tcctccgctg agaaaggagt ttaggattaa
      901 aggcagatag gcgataataa atggaaaatt tcgaacaaaa gtttgatgaa actattaaga
      961 ggggactaga aattgtgaaa gagacagaag aagatagatt aatgacgctt agcgttggtc
     1021 ctcaacatcc aggttcagga cactttaggt ttaccatcaa ggtagatgga gattatatcg
     1081 tttattgtga cccagaccct ggatacgtac atagaggtga ggaaaaaatg tgcgaataca
     1141 gaaactttat tcaaaatatt cctcaccttg agcgaccggt aatccatgat tctacaaata
     1201 ttacatattc atacagctta gcagtggagg aacttactaa tatccaagtt ccacttcggg
     1261 gacaatacat tcgtgcgttg gcctcagaac tcaataggca ggtatatacg ctttattggc
     1321 tgggaatata cggaatattt cttggacatt ctaccatgtt tatgtggcca gttggagaca
     1381 gggaactctt cattgatctt ttagaggcgc ttaccggtgc aagagtcaca catgctttta
     1441 atattccagg gggagttcgg aacgatatgc ccgaaggatt taaagataga tgcttaagac
     1501 aagttgccta ttttgaaaag agacttgtcg aatatgagga cattttttac aataatccat
     1561 tatttagaca gagaactgag ggggttggaa ttttgacaaa ggaagatgcc ataaagcttg
     1621 gagttacagg ttccgtgctt agggcatcgg gaattccttt tgatgtcaga aaggcagagc
     1681 cgtatgatgt ttatgaagaa atagatttca agatacagta tatgaagact tgtgattctt
     1741 atgcaagatc aatggtcccg tttcttgata tgaaagagtc atgtcatatt attagagaat
     1801 tgctggataa gatgcctcaa tcaggtgaag tgagagcaaa gctacaacca aatccaaagg
     1861 ggccagccgg agaatcttac aaaagagtag aatccggaag aggtgctttg ggatattaca
     1921 tagtgagtga tggtacccca aagccttata gggttaaact atcagtaggc tcatttagga
     1981 atatgcttgc acttccattc cttttgatag gatcaaaatt agctgacatg ccatcaattt
     2041 attggtcatt aaactattgg ccagtggagg ctgacagatg aatatgcgac ctacaacagg
     2101 atttcaattt gacaaatgta tagatgagga aaaaataaca gggatctagt aaatgattgg
     2161 gaggaagagt gtataataaa attggccact gctccaaaag actttagatt cgggaacttt
     2221 gtaggaagtt taatacagct aattttgtgg ataattgtta ttgttacctt aataggactt
     2281 ccattgatat ttattatcct attctacgta ccacttccac ctgtaaacga tgaagtcctt
     2341 acaccatacc tctttttctc aatgatggtg gatcccacac gtactgtacc aatcataaat
     2401 ttcttgattc acactgatct ttttagagtc gctgtatttc caggatttac ctatgctgct
     2461 cttcttgctg ctgccactat ttttatcgaa cgcaagttcc ttgccaaaat gcagttgaga
     2521 atcggaccgc tatatgcagg aaagatagaa ggtattttgc agttgatagc tgatgggttg
     2581 aaattaattt caaaagaaat catagttcca tctggtgctg acaaactaat attttggaca
     2641 gcacctgtcg cttttgtagt tacatcagca gctgtggtat cattagttcc cgcggctcct
     2701 ggatgggttg ttgcagatct tgacgttggc ataatcgcag tatttgcgtt tttgggattc
     2761 ttccctctta ttgcactttt gttctcatgg gctagtaaca gtaaatatcc attcatcggt
     2821 ggactacgtg ctcttcatca gatgatcgcg tttgaaattc catttatcct ctctgctctt
     2881 tcagtagtaa ttcttgcagg atcgttaaat cttactgaca tagcagaagc tcaacatcca
     2941 tactggttca tattattttt accaataagc gcatttgtat tctatatttc ttcactggca
     3001 gaacttgaaa gaattccatt cgatctgcct gaagctgaaa gtgagattgt tgcaggatgg
     3061 ttaactgaaa cttcaggaat gatttatgga ctgattcaat tgggaactta tattaaattg
     3121 tatgtccttg ctgctttgtt cgttattttg tttctaggtg gatggtcagg acctcaaata
     3181 tttccagagg aaatcatacc aggatacacc ggagataaaa tatacaatgc aactactgta
     3241 aatgcagtat tctggtttac tatcaaaacc cttggtatga taatgctggt ccttctacca
     3301 cgaggtatca atcctagaat tagaatcgat atattattgc atacgggttg gtacaagcta
     3361 atagtattgg cattcatcaa tatttttgtc gcgttgtcgc tagtgtatgg tggaattctg
     3421 ggaccaggag gtttgttgtc aacatgacca gctctgcagg tggtttcata aaagctattg
     3481 aatcaggatc aaagcatctt cttatcaaga gatttacatt gagatatcca gaaaagaaac
     3541 taaagttcgt tggtgacgga tatcaatttg atccaaaaag aggtgtagga atcgcaggtt
     3601 ct
//
LOCUS       DASUMD010000117         4096 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_469262, whole genome shotgun sequence.
ACCESSION   DASUMD010000117 DASUMD010000000
VERSION     DASUMD010000117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4096)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4096)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4096
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_469262"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..574
                     /locus_tag="VFX26_03285"
     CDS             <1..574
                     /locus_tag="VFX26_03285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573530.1"
                     /translation="IVDRILSAFAFAFSDTYRAVTHNKGIMNGIDAVSIATGQDFRAI
                     EAAAHAYASRDGKYRSLTTFSKSSNGDLVGRIEIPLSVGIVGGISTVNPVARMGLKIL
                     GVKSACELACVIASAGLAQNLAAIKALSTEGIQKGHMKLHAKNIAVAAGATGKLVDFV
                     SETMYNQSKISMDNARRILQDLHHARDSSS"
     gene            701..1678
                     /gene="hisG"
                     /locus_tag="VFX26_03290"
     CDS             701..1678
                     /gene="hisG"
                     /locus_tag="VFX26_03290"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HEX5573531.1"
                     /translation="MATVKFAIPKGSIEDATFKILEEAWQTVKGRGRTYRVKLSDPEI
                     EVKILRPQEIPTYVQEGFYDIGITGKDWIVEATADVKILLDLEYGQVNQVVAIPENFE
                     YNNLTELIEGFAKQKRTLRISSEYLTTTSARIRSNKSYQKYYGDIRPMIITPWMRIGE
                     NKMVEIFLSFGATEAKPPEDVDAICDITETGTTLIQNNLKLIETLGHSSAQLIANKNS
                     LEDKIKSEKIADILALIKGVVEARKKLHIFVNVKEENLQKLLDSLPALKRPTISKLSE
                     EGWFGVNTVIDKNEFIKIVPKLREIAQGLVVMQPKQILPLEELRQVMNQ"
     gene            1675..2958
                     /gene="hisD"
                     /locus_tag="VFX26_03295"
     CDS             1675..2958
                     /gene="hisD"
                     /locus_tag="VFX26_03295"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF013013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004399 - histidinol dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HEX5573532.1"
                     /translation="MIKKIKVGNAVKEAKIIRGSNRIPQKSVIVEKIINDVIKFGDNA
                     LIKYTKKYDNVKIDSILVDKAELRKAYKEVTTNQLNSLKKSKKLLEKNEKMLLERLTG
                     IILSEDGVKIEKALKPIDSVGCYVPGGRARYPSTLMMCVVPAVIAGVNRISVVSPPMK
                     DGKIDPVTLVAADICGIDEVYRVGGAQAVAALAYGTKTISKVDKIVGPGGLFVNIAKF
                     LVSNKIAIDMIAGPTELLIYADSKSDPKFVVKDLISQAEHSTDTICGIVTTSEPLAAK
                     LKSEITKTLNSSLPRLEIVSTSFKKNGFIALCKNEEDVISFINELAPEHLEVLSENPI
                     KIASMVKTAGIVLLGKYSPSSASDYCLGSNHVLPTTEFGKSKSSLSVLDFVKLVNHIR
                     VTRIGLQSVQKYIKELAFAEGLPNHYYAVEERFRN"
     gene            2955..4019
                     /gene="hisC"
                     /locus_tag="VFX26_03300"
     CDS             2955..4019
                     /gene="hisC"
                     /locus_tag="VFX26_03300"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR01141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HEX5573533.1"
                     /translation="MTDWLMKEMKKFSTIEKYAIPSESNYFKLDANENLVLEKDFLTK
                     ISLESLKKIDLRKYPIDLYERLYKKLSHYLKISEESLVLGSGSDQIIDLLLTLIGRGR
                     RLTSIYPTFSYFKTRCQFHGVAFSEIMLSSIDNTLDIEKFIIDAKKSHVIYLCSPNNP
                     TGNQFEKSKILDILSSLKNNLVIVDEAYVEFAKYSLIKYVKEYPNLVILRTFSKALGL
                     AGARVGYMVANDELADLFRNRIQLPYAVNSLSLAIAISLISSPRKVEESISLIKRERE
                     RLYQRLSKIKNIEVYKSDANFLFIKCNTKYGRIVDALENSKIIVKALGNINNYGNCIR
                     MTVGTKKMNDKILSTIKDIQ"
BASE COUNT         1474 a          636 c          811 g         1175 t
ORIGIN      
        1 tatagttgac aggatacttt ctgcttttgc atttgcattc tctgatacgt acagggccgt
       61 aacccataac aaaggcatta tgaatggaat agatgcagtg tctattgcaa caggtcaaga
      121 ttttcgtgca attgaggctg ctgctcatgc ttatgcatca agagatggaa aatatcgatc
      181 acttaccact ttttcaaagt catctaatgg cgatctagta gggagaatag aaattccttt
      241 gtctgttggc atagtaggtg ggatatcaac cgtgaatcct gtagctagaa tgggtttgaa
      301 aattttagga gtaaaatcag catgtgaatt ggcttgtgtt atagcatctg ctggactagc
      361 acaaaatttg gcagcaatta aggcattgtc tacagaagga attcaaaagg gccatatgaa
      421 attacacgca aagaatattg ctgttgcagc aggagccact ggcaaattag ttgattttgt
      481 atctgaaaca atgtataatc aatcaaagat aagtatggat aatgctagac gaattctgca
      541 ggatttacat cacgcaagag acagttcatc ctagagcatt ttataaataa ttttgaacaa
      601 ttattcataa caaaacatct taatatttat cagaaaaaaa ccatacaaat aaatttttca
      661 atagaaatat atcccattaa aaagatcctt ttgatatcag atggcaacag taaaatttgc
      721 gataccaaaa ggcagtatcg aagatgcgac ctttaagatc cttgaagagg catggcaaac
      781 tgttaaaggt cgtggaagga cctatagagt taagctaagc gatcctgaaa ttgaagtaaa
      841 aatcttgagg cctcaagaga tacctacata tgtacaagag ggattttatg atataggaat
      901 tactggtaaa gattggattg ttgaggcaac tgcggatgtt aagattttat tggatctaga
      961 atatggtcaa gttaatcagg tcgtagcgat cccagaaaat tttgaataca acaacttgac
     1021 tgagttgata gaaggtttcg caaaacagaa acgaacgttg agaatttcat ctgaatatct
     1081 gactactact tcggctcgca tacgttctaa taaatcatat caaaaatatt atggggatat
     1141 ccgaccgatg attattacac catggatgag gataggtgaa aataaaatgg ttgaaatctt
     1201 tctatccttt ggtgcaactg aggccaaacc tcccgaagat gttgatgcta tttgtgatat
     1261 cacagaaaca ggtactacac tcattcagaa caacctaaaa cttattgaga ccctaggtca
     1321 ttcgagtgct caattaattg caaacaaaaa ttctttagaa gacaaaataa agtctgaaaa
     1381 aattgcggac atactggccc ttatcaaggg agttgtggag gcaaggaaaa aacttcacat
     1441 ttttgtaaat gtgaaagaag agaacctgca gaaattgttg gacagtttac ctgcccttaa
     1501 aagacccaca ataagcaaat taagtgaaga aggctggttt ggtgtcaata cggtgataga
     1561 taaaaatgag ttcataaaga ttgttccaaa gttaagagag atagctcaag gacttgtcgt
     1621 gatgcagcca aaacaaatac tcccattaga ggagttaaga caggtcatga atcagtgata
     1681 aaaaaaataa aagtagggaa cgcagtcaaa gaagcaaaga tcattcgtgg ttcaaatcgt
     1741 attcctcaga agagtgttat tgttgaaaag ataattaatg atgttatcaa atttggggac
     1801 aacgcactaa taaaatatac taaaaaatat gataatgtaa aaatcgattc tattcttgtt
     1861 gataaagccg aattgagaaa agcctacaag gaggtaacta cgaatcaatt gaattctctt
     1921 aagaaaagca aaaaacttct tgaaaagaat gaaaaaatgc ttctagaacg attgacagga
     1981 atcatattat cagaagatgg agtaaaaatt gagaaagctc tcaaaccaat agacagtgtt
     2041 ggttgttatg ttccaggagg acgagcacgg tatccaagca cgttgatgat gtgtgttgtt
     2101 cctgcagtaa ttgcaggtgt aaacaggata tctgtagtaa gtcctcccat gaaagatggt
     2161 aaaattgatc ctgtcacact tgtggctgcc gatatctgcg gtatagacga agtctataga
     2221 gtcggtggtg cccaagcagt ggcagctctt gcatatggga ctaaaacaat aagcaaggtt
     2281 gataaaatcg tcggacccgg aggcctattt gttaacattg caaaatttct tgttagcaat
     2341 aagattgcca ttgatatgat agcaggtcca accgaacttt taatatatgc agattcaaag
     2401 tctgatccca aatttgtagt caaggatttg atatctcagg cagaacacag tacggatacc
     2461 atttgtggta tcgttactac ttcagagcct ttggctgcaa aattaaagag tgaaattaca
     2521 aagacattga acagttccct gccaagattg gaaattgtat caaccagttt caagaagaat
     2581 gggttcattg ccctgtgtaa aaacgaggag gatgtgatat catttattaa cgaattagcc
     2641 ccagaacatc ttgaagtctt atcggagaac cctattaaaa tagcttctat ggtaaaaact
     2701 gcaggtattg tattactggg aaagtacagt ccctcatctg ccagcgatta ttgtcttgga
     2761 tcaaatcacg tgttacctac tacagaattt ggcaaatcaa agtcttcatt atctgtactt
     2821 gactttgtaa aattagttaa ccacattaga gtaacaagaa ttggacttca atcggttcaa
     2881 aaatacataa aggaattggc ttttgctgaa ggtttaccaa atcattatta tgcagtagaa
     2941 gagaggttca gaaattgaca gattggttaa tgaaagaaat gaagaaattt tctacaattg
     3001 aaaaatatgc aataccctct gaaagtaatt attttaaatt ggacgcaaat gaaaatcttg
     3061 ttttagagaa ggattttctc accaagattt cactagagag tttaaaaaaa attgatctga
     3121 gaaaatatcc cattgatctt tatgaacgac tatacaaaaa gctatctcat tatctgaaga
     3181 taagtgaaga gtcactagtt ttgggtagcg gttctgatca aattatagac ttgcttttga
     3241 cgctgattgg aagaggtagg agattaacat cgatataccc tactttttcc tactttaaaa
     3301 caaggtgcca gtttcatgga gtagcgtttt ctgaaataat gttatcatca attgataaca
     3361 ctctggatat agagaaattt attatcgatg caaaaaaatc tcatgtgata tatttgtgtt
     3421 ctccaaacaa tcctacggga aatcaatttg agaaatccaa aattcttgat attttgagtt
     3481 ccttgaaaaa taatctggta attgtagacg aggcatatgt agaatttgca aaatattcct
     3541 taattaaata tgtgaaggaa tatccaaatc tagtaattct ccgcacattt tcaaaggcat
     3601 tgggattggc aggcgcaagg gtaggatata tggtggcaaa tgacgagctt gcagatttat
     3661 ttagaaatag gattcagtta ccatatgcag taaatagcct ctcacttgct attgcaattt
     3721 cacttatctc tagtcctaga aaagtagaag agagcatatc actaataaaa cgtgaaagag
     3781 aacggctcta ccaaaggctc tcaaaaatca aaaacataga agtttacaag tcagatgcaa
     3841 actttctttt cataaaatgt aacacaaaat atggtagaat cgttgatgca ctagaaaatt
     3901 ctaaaataat agtaaaggcg ttaggtaaca tcaataacta cggaaactgt attagaatga
     3961 cggtgggtac aaaaaaaatg aacgataaaa tattgtcaac aatcaaggat attcaataaa
     4021 atcaaagtag attcgattag aatgaattca aatgcatgta ttatttttga tatcgatggt
     4081 acgttaattg atacca
//
LOCUS       DASUMD010000118         3182 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1243537, whole genome shotgun sequence.
ACCESSION   DASUMD010000118 DASUMD010000000
VERSION     DASUMD010000118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3182)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3182)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3182
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1243537"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(303..869)
                     /locus_tag="VFX26_03305"
     CDS             complement(303..869)
                     /locus_tag="VFX26_03305"
                     /inference="COORDINATES: protein motif:HMM:NF014678.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF192 domain-containing protein"
                     /protein_id="HEX5573534.1"
                     /translation="MSKVRLKFNWTTLFLSLDIKNTIMLIAFTIVIFLISSSQSHATE
                     LQSNNITSASVTDFFPNYQKTTISINGFNVSMAIASTDEQRIRGLSGLEKMNENEGMI
                     FLFDEPSKQGFWMNKMNFPIDIIWLDSNSKVVHIEKKIEPCKVFLACPVYNPQVDSLY
                     VIELRSGFTDDHSMKNGMIINFDLPENN"
     gene            1051..1743
                     /gene="bioD"
                     /locus_tag="VFX26_03310"
     CDS             1051..1743
                     /gene="bioD"
                     /locus_tag="VFX26_03310"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: protein motif:HMM:NF024891.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004141 - dethiobiotin synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HEX5573535.1"
                     /translation="MTGTDTEIGKTTIACGLAWLLRRNGIRVGIMKPFATSSTMYSNR
                     YKSHDTAALAEAADIEESDQILNPIFFPIPASPYMAAEILHKTVDLGIVTEKFNVLKK
                     KYDFTVVEGIGGVMVPITAKISLLDVIRRMNLATIIVSRPKLGSINHTILTINACKGK
                     KIPIIGVIFNQMPKHPNIVESMTPNHIEKLTGIKTISIIPFIDNCNFEKIGSYLERTS
                     VIKNVISRLNQN"
     gene            complement(1762..2817)
                     /locus_tag="VFX26_03315"
     CDS             complement(1762..2817)
                     /locus_tag="VFX26_03315"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: protein motif:HMM:TIGR00057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0061710 - L-threonylcarbamoyladenylate
                     synthase [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase"
                     /protein_id="HEX5573536.1"
                     /translation="MKKQFRTDIMKINERRPNHVIISKASKLICSGEIIAFPTETVYG
                     LGANALDPSAVSKIFEIKGRPSDNPLIIHIADMKTLETLVSQIPPKAYLIIKKFWPGP
                     VTLVLKKSKIVPKITTGGLNTVAVRMPRNNVALALIRKSALPIAAPSANISGRPSPTT
                     ATHVKDDLDGKIKLILDGGSTKIGIESTVIDMTQPTPMILRPGGISKESIENEIGKVL
                     FHNSLIGIDRKKIKIYRSPGMKYRHYCPKAHVMLVEGPENDAKSKIIQLTKKLEAEGK
                     KVSIMTASKSLKVNSEKIQYMGRSLETIARNLFANLRQADKNNIDVIIVQGIQYNKIG
                     FAIMNRLKKAAITNIRV"
     gene            3021..>3182
                     /locus_tag="VFX26_03320"
     CDS             3021..>3182
                     /locus_tag="VFX26_03320"
                     /inference="COORDINATES: protein motif:HMM:NF026297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEX5573537.1"
                     /translation="MSKTVCKNENNRGKIQIMADIVDLCKAGIRKTHIMYRGNLSYEQ
                     INRYLYELLE"
BASE COUNT         1008 a          545 c          542 g         1087 t
ORIGIN      
        1 tcttgtattg tttagaaatt ttcttatcaa ccaaagtatc tgatgataag gttagtcatt
       61 tcatcctgtg atagtcttag aaattggtcc aaatcttttt catagtggcg cagaaacttt
      121 tgtatacaga atgtgtatga ctttctgctg gactctgtct ttagtgaatt tatgaaatta
      181 aagtatgctt tgctttgttc gtcccacact tgcatactcc ttttacctga gactgcctta
      241 ttagaactaa ttttatttat taaactagtt ttacgcatga attaattatc gttaatcatt
      301 agtcaattgt tctctggtag atcgaaatta ataatcatac catttttcat ggaatgatca
      361 tcagtaaaac cagatcgaag ttctattaca tataatgaat ctacttgagg attataaacc
      421 ggacatgcta gaaaaacctt acatggttct attttttttt cgatgtggac gactttactg
      481 tttgaatcca gccaaataat gtctatggga aaattcattt tgttcatcca aaacccttgc
      541 tttgatggtt catcaaataa aaatatcatt ccttcatttt cattcatctt ttccaatccg
      601 gagagacctc tgatcctctg ttcgtcagtt gatgctatcg ccattgagac attaaatcca
      661 ttaattgata ttgttgtttt ttgataatta ggaaagaaat ccgtaacact agctgatgtg
      721 atgttattac tctgtagttc agttgcatgc gattgagaag acgatatcaa aaaaataaca
      781 atagtaaaag caatgagcat tattgtattt ttgatatcca aactaagaaa cagtgttgtc
      841 caattgaatt ttaatcttac ttttgacata atgagtcaaa atcagggaca tgaggtacat
      901 gaatacgtgt actccaggga aatcttttac aaatacatca tatttaacag caatgagatg
      961 tgatagaaaa tctaaataat agtaaattta cgtttattta cgaaaagaga tttatcaact
     1021 agacagcttg agaaattaca aggtgtattt attacaggaa ctgatactga aattggaaaa
     1081 actacaatag catgtggcct ggcatggttg ctcaggagaa acggaataag ggtcggcatt
     1141 atgaaaccat ttgcaacatc atccactatg tactcaaatc gctacaagtc tcatgatact
     1201 gccgctctag cggaagccgc agatattgaa gaatctgatc aaatattgaa tccaatattc
     1261 tttcccatac cagcatctcc ctatatggca gcagaaattt tgcacaaaac cgtggatcta
     1321 ggaattgtaa ctgaaaaatt taacgttctt aaaaaaaaat acgatttcac tgtggttgaa
     1381 ggaattggtg gtgttatggt tccaattaca gcgaaaattt cattactaga tgttatcagg
     1441 aggatgaatc tagccacaat tattgtgtca aggcctaaac taggttccat taaccatact
     1501 attttgacca taaacgcctg caaaggaaag aaaataccaa ttatcggggt aatatttaat
     1561 caaatgccaa agcatccaaa tattgtggaa tctatgactc caaatcatat tgaaaaatta
     1621 acaggcatta aaacaatatc aataattccg tttattgata attgtaattt tgagaaaatt
     1681 ggatcttatc tcgaaagaac ttcagttatc aagaatgtta tatcaaggtt aaatcagaat
     1741 taactttcca ttaatgtcag gttataccct aatatttgta atggctgcct tctttagcct
     1801 attcatgata gcaaaaccta tcttgttata ctgaattcct tgaactatta tgacatctat
     1861 attatttttg tcagcttgcc ggagatttgc aaatagattt cttgcgattg tttctaaaga
     1921 ccttcccata tattgaattt tttctgaatt tactttcagt gacttactag cggtcataat
     1981 agaaactttc ttgccttcag cctctaattt tttagtcaat tgaattatct tactctttgc
     2041 gtcattttcg gggccctcga ccagcatgac atgggccttt ggacaataat gtcggtattt
     2101 catacccggg gacctgtaaa tcttgatctt tttcctgtca ataccaataa gagaattatg
     2161 aaagagaact ttacctattt cattttcaat tgactccttt gaaattccac cgggtcttag
     2221 tatcattgga gtgggttgtg tcatatcaat tactgtcgat tcaattccaa ttttcgtact
     2281 accgccatcc aaaattaatt ttatttttcc atcaagatca tctttcacat gagtggcagt
     2341 tgtaggacta ggtcttcccg agatgtttgc agatggggca gcaataggga gagcagactt
     2401 tcttattagc gccagggcaa cattattcct tggcatacgt actgccactg tgtttaaacc
     2461 tcctgtagta attttaggca caatctttga tttcttgaga acgagagtca ctggaccggg
     2521 ccagaatttt ttaataatta gatatgcttt aggaggtatt tgactcacca gagtctccaa
     2581 agttttcata tctgctatgt ggatgattaa tggattatcg gaaggtctgc ccttaatttc
     2641 aaatatcttt gatacggctg atggatctag cgcatttgct cctaatccat atactgtttc
     2701 tgttgggaat gctataattt ctccactgca gattaatttt gatgccttcg atatgataac
     2761 atgattaggt cttctttcat ttatcttcat tatgtcagtt ctgaactgtt ttttcatgaa
     2821 tggaaatggt agtagttcgt actattatta tatagattcg tatacggcgc tagtcaaaat
     2881 tccagttata gttatctatg tagacgattc atatacaaat aggataaaca tcttttgtac
     2941 cgctctgagt tggaacgatc gttccaaaat ggaatttcat ggttcccctt aattacttag
     3001 gtatctttca taacaacgaa atgagcaaaa cagtctgtaa aaatgaaaat aatagaggaa
     3061 aaatccagat tatggcagac atagtagatc tatgtaaagc aggtataaga aaaacacaca
     3121 taatgtacag aggaaacttg agctatgaac aaattaacag gtacttatat gaacttttag
     3181 aa
//
LOCUS       DASUMD010000119         2137 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_138016, whole genome shotgun sequence.
ACCESSION   DASUMD010000119 DASUMD010000000
VERSION     DASUMD010000119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2137)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2137)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2137
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_138016"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..234
                     /locus_tag="VFX26_03325"
     CDS             <1..234
                     /locus_tag="VFX26_03325"
                     /inference="COORDINATES: protein motif:HMM:NF013429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIM barrel protein"
                     /protein_id="HEX5573538.1"
                     /translation="DKLSEYVRHVHLEDISADRTHNHLILGEGAINIDSALRSLNDIG
                     YEGFVTVELYPYQECPAYAAREAMKFIKSLDYL"
     gene            313..1215
                     /locus_tag="VFX26_03330"
     CDS             313..1215
                     /locus_tag="VFX26_03330"
                     /inference="COORDINATES: protein motif:HMM:NF013226.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiA family prenyltransferase"
                     /protein_id="HEX5573539.1"
                     /translation="MKSSNLKDYLLLIRLPNLFTLPSNILVGFAIASSLTLTFTSFVQ
                     VLLLVTISIFLYCVGLVLNDLFDYNIDKKERPSRPIASGKISRKVAIVLVIIFTVIAL
                     SLSLLVSVPTFGISMVLISLIFGYDKYLKNTQAGPFTIAAARVMNVTLGTSASLNNID
                     SFPQFVILVFVLTITFVYVTLIGFISKYEVQGFSENIKLYLIPVVIAAIISSIILFTF
                     IGFFKYESLIILVLFTFIMAKAVYRIQKKDPIGIQQCVQKMIVSIIVLDSTYLSGIRG
                     LEVGLAVLLLVVPLLILSRKMYMT"
     gene            1262..>2137
                     /locus_tag="VFX26_03335"
     CDS             1262..>2137
                     /locus_tag="VFX26_03335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide pyrophosphatase/phosphodiesterase
                     family protein"
                     /protein_id="HEX5573540.1"
                     /translation="MVKHVIIIDIVGLERKHISENITPNIFKISETGETRDLETVFPA
                     VTCTVQSSLLSGSYPEVHGIISNGLYDRQHYTVSFWEQSSNLVQADRVWDTIKMHGSG
                     LKTAVLFWQNTMYSNAELVLTPRPLHMDDRMIMWCYSKPPGLYEKLIEKIGKFDLTWY
                     WGPLVSKKSSEWIEKATEYVLENEKPSLLFTYIPHLDYSFQKNGTSYKDLKDDLKFVD
                     DLVGRLIKKVSEIGILGDTQFIIFSEYGFTDVNSDISLNSIFRENDLLAVREIEQTEY
                     LDLEYSKAFAMVDHQV"
BASE COUNT          683 a          345 c          401 g          708 t
ORIGIN      
        1 gataaattat ctgaatatgt ccggcatgtg catttagaag atatatctgc agatagaacc
       61 cataatcatc ttattttggg ggaaggtgcg ataaacattg attctgctct cagatccctt
      121 aatgatattg gatatgaggg attcgttacg gtagaactgt atccatatca ggaatgtccc
      181 gcctatgctg ctagagaggc aatgaagttt attaaatcac ttgattatct ctagtcaaga
      241 aatgagtttt ccagtgtcgc atatatcaat aatctttcaa ttaattctgt ccatctatcc
      301 cagatgatac atatgaaaag ttctaatctc aaagactatc tgctcctaat cagactccca
      361 aatttattta ctctcccttc aaacatccta gtgggttttg caattgcctc atcattgact
      421 ctgacattta catcatttgt gcaagttctc ttgttagtaa ctatctccat attcctttat
      481 tgtgtaggac ttgtgctcaa cgatcttttt gattataaca ttgataagaa agaaaggcca
      541 agcagaccca ttgcatcagg taaaatatca agaaaagtgg ctattgtcct tgttataata
      601 tttactgtca ttgctctgag tttgtcgcta ttagttagtg ttccgacatt tggtatatca
      661 atggttttga tctcccttat ttttgggtat gataagtatt taaagaatac tcaggcaggt
      721 ccgtttacca ttgctgcagc tagagtgatg aatgttacgc tgggaacaag tgcaagttta
      781 aacaacatcg atagttttcc tcaatttgtt attttggtct ttgttctgac tataacattt
      841 gtttacgtta cattaatagg attcataagc aaatatgagg ttcaagggtt ttcagaaaat
      901 attaaactgt atttgatccc agtggtaatt gcggcgatta tttcctcaat catattgttt
      961 accttcattg gatttttcaa atatgaatct ctaataatat tggtactgtt tacatttatt
     1021 atggctaagg cggtttacag aattcaaaag aaagatccca ttggaataca acaatgtgtt
     1081 caaaaaatga ttgtgtcaat tattgtactt gattctacct atttgagtgg gataagagga
     1141 ttggaagttg gacttgccgt attgttgcta gtagttccat tactcatact gtcaagaaaa
     1201 atgtacatga cttgagaaaa aaataattag aattaaattc ttgataaatc ccaataaatt
     1261 gatggtcaaa cacgtaatca ttatcgatat tgtaggtttg gagagaaagc acatttccga
     1321 aaacataact ccaaatatct ttaaaatctc ggaaactggg gaaacaagag atttagagac
     1381 agtatttcct gcagtaacat gtactgttca gagtagtttg ctttcaggat catatcctga
     1441 ggtacatgga atcatttcta atgggttgta tgatagacag cattacaccg tttctttttg
     1501 ggaacaatca agtaatttgg tgcaagcaga tagggtttgg gataccatca aaatgcacgg
     1561 tagtggctta aaaacagccg tcttgttctg gcagaataca atgtattcta atgcagagct
     1621 agttctaact ccgcgtccac ttcacatgga tgatagaatg ataatgtggt gctatagcaa
     1681 accgccaggt ctgtatgaaa aactaattga aaaaatagga aaatttgatt tgacctggta
     1741 ctggggtcct cttgtctcta aaaaatccag cgaatggata gagaaggcaa ctgaatatgt
     1801 tctagaaaat gaaaaaccta gtttattatt tacatatatt ccacatttgg attactcttt
     1861 ccaaaaaaat ggaacatcgt ataaagatct aaaagatgac ctaaagtttg ttgatgattt
     1921 ggttggtaga ttgataaaga aagtatctga aattggcata ttaggggaca cacaatttat
     1981 catattctca gaatatggat tcacagatgt taattctgac atttcattaa attccatatt
     2041 tagagaaaat gatctgcttg cagtgagaga aatcgaacag actgaatatt tggaccttga
     2101 atacagcaaa gcctttgcaa tggtggacca ccaggta
//
LOCUS       DASUMD010000120         5244 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1466411, whole genome shotgun sequence.
ACCESSION   DASUMD010000120 DASUMD010000000
VERSION     DASUMD010000120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5244)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5244)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5244
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1466411"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..200
                     /locus_tag="VFX26_03340"
     CDS             <1..200
                     /locus_tag="VFX26_03340"
                     /inference="COORDINATES: protein motif:HMM:NF025819.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Mov34/MPN/PAD-1 family protein"
                     /protein_id="HEX5573541.1"
                     /translation="SDNALDVVGVYHSHLEGSNPSNTDLTYMKINPVIWLIYDVSKST
                     YRAFLLVQDCLKEIKIKISRD"
     gene            complement(190..1467)
                     /gene="aspS"
                     /locus_tag="VFX26_03345"
     CDS             complement(190..1467)
                     /gene="aspS"
                     /locus_tag="VFX26_03345"
                     /EC_number="6.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004815 - aspartate-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006422 - aspartyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA(Asn) ligase"
                     /protein_id="HEX5573542.1"
                     /translation="MNRTFASSIDKNHIGQNLTFVGWLEDFRDMGKIGFISVRDMTGN
                     FQGVLTGKLLSGFREIPRQSVIVVNGTIQDTRAENFKVEVRVEKVELLSRAINPLPID
                     PTGRVKSSLDKRLDSRALDLRNFKISNIFRTRSHVLHLIRKFLNSKMFVEVNTPKIIG
                     TATEGGADLFGFEYFSKKAFLAQSPQLYKEQLTLGLERVFEISSYFRAEPSHTVRHLS
                     EFVSVDLESAFLEYGDIMDIVQDLIISTINDLFVHYDKQMTYFENKQDIMVDKIPRIT
                     YEKCLEDLNSLGEKIEFGDDLSDPALKKLGEIYPKFYFIIDWPTKLKPFYILEHEKKS
                     ELSKSFDLQYGYLEIVSGGTREHDSERLKNKLLEKGLNPKSFSDHLQTFDWGMPPHSG
                     CGLGFDRFIMILTNSTNIREVVLYPRDSERLSP"
     gene            complement(1490..1999)
                     /locus_tag="VFX26_03350"
     CDS             complement(1490..1999)
                     /locus_tag="VFX26_03350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573543.1"
                     /translation="MKVPICIFDAKTGVLCPKCESRLKNGELSTIDVESSIKLIKLSH
                     KNQDIDKLNLIGSQKIDEDYVLILKDSNVSHINSNDKLMSSVEKEFNGKVWFVEANSS
                     IRKFLENLFFPIRILKTNMIWLPDGNQVTQVTIESKDYEKFFNIIEKIKKIVNEIRKV
                     ELVVEIAGK"
     gene            2114..3061
                     /locus_tag="VFX26_03355"
     CDS             2114..3061
                     /locus_tag="VFX26_03355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX5573544.1"
                     /translation="MNFALTVNSLSVYYLSRFGTVKAVDDVSFSLEKNQSIGIVGESG
                     CGKSTLGAALLRSVPYPGKIVDGRIILDGQDITKISDDEFDKKIRWKKISMIFQGALN
                     SLDPVFTVGSQMKEILKQHGYSTDDLQVIADSLKSVLLEPSVTKKYPHELSGGMKQRI
                     SIAMALLLNPKILVADEPTTSLDVMVQSQIINLLKKLKRDRNMSIVFISHDLGVISEV
                     SETIAIMYRGQIVELGKSYEIYKNPKHPYTEKLVTSIPNIKNKENRPQNLGEKSQEPM
                     RTETGCKFYDDCPYAKEKCRNDPPMINHKDRYIRCWLYE"
     gene            3180..4268
                     /gene="fbp"
                     /locus_tag="VFX26_03360"
     CDS             3180..4268
                     /gene="fbp"
                     /locus_tag="VFX26_03360"
                     /EC_number="3.1.3.11"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004332 - fructose-bisphosphate aldolase
                     activity [Evidence IEA];
                     GO_function: GO:0042132 - fructose 1,6-bisphosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-1,6-bisphosphate aldolase/phosphatase"
                     /protein_id="HEX5573545.1"
                     /translation="MKITLSAIKADIGAIGGHTRPSDELVEAVNRVVKENSKLLLDYY
                     IGYTGDDIHIIMTHTRGTDSKEIHKMAWDAFTEGTKIAKDQGLYGAGQDLLKDAFSGN
                     VRGMGPGVAEMDIEERPSEVFCIFAADKTEPGAFNFPLWRMFVDARSSTGLLINEKLA
                     EGVKFRIMDVMTGKVAGLKLWQDKPELETALMYPGRYVVHSILSSDGEQIVSASTDRL
                     HNIAGTYVGKDDPIAIVRTQKNFPATEEAGSAFNNPHYVAGNTRGSHHMPLMPVKLNS
                     AASLNYAIPIVSCLVFSMHNGLFTGPHDGFGTSDWDLQRLWASERAMIMRNQGFIHPA
                     TLVPDELEYNKGYEARMEKLNSKFEDLS"
     gene            4277..4951
                     /gene="tpiA"
                     /locus_tag="VFX26_03365"
     CDS             4277..4951
                     /gene="tpiA"
                     /locus_tag="VFX26_03365"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004807 - triose-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HEX5573546.1"
                     /translation="MNTFSNPLVINLKNYNEISGDNSIKIVEDAKNVSLLNHKEIIIA
                     PPLSSILTLSKIKVPIISQHVDDASLGATTGFVIPEIVKSYGAVGSIINHSEHKIEHS
                     QIRNLVRRLRELDMISIVCADDLKEVEALSQFSPDFLAIEPPELIGKGIAVSKANPSI
                     IKNSVQVVKGISLTVKVLCGAGIVDKTDVEKALELGAEGILISSGVVKSPSWYNKILE
                     LSSVLK"
     gene            complement(4986..>5244)
                     /locus_tag="VFX26_03370"
     CDS             complement(4986..>5244)
                     /locus_tag="VFX26_03370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573547.1"
                     /translation="KDTRLLKILVEEKALVKLLKTIGSGREYPTRELLTKLGAYGYGH
                     KLLLKAQKRGLVDRKTVKNKVFNKLTNDGKKIVKIAKEIGV"
BASE COUNT         1687 a          908 c          964 g         1685 t
ORIGIN      
        1 catctgataa tgcactagat gttgttggtg tctaccattc acatttggag ggatcaaatc
       61 cctctaatac tgacctgact tacatgaaga ttaatccggt gatatggctc atatatgatg
      121 tatcaaagtc gacatacagg gcatttttgt tagtacaaga ttgcttgaaa gaaataaaaa
      181 ttaagatatc tagggactaa gcctctcaga gtctctagga tagagaacaa cttctctaat
      241 gtttgtggag ttagtgagga tcattatgaa cctgtcaaaa ccaagaccac atcccgaatg
      301 tggtggcatc ccccaatcaa atgtttgtaa atgatcagaa aaactcttgg ggttaagtcc
      361 tttttcaagc aacttgtttt tcaatctttc agaatcgtgc tctctggttc ctccagaaac
      421 aatttctaaa tatccatatt gcaggtcaaa tgactttgaa agctctgatt ttttttcatg
      481 ttcaagtatg taaaatggtt ttagttttgt tggccaatca attatgaagt aaaatttggg
      541 atatatctca ccaagttttt ttaatgcagg atcagaaaga tcatccccaa attctatttt
      601 ttctcctagg ctattcaaat cctccagaca cttttcataa gttattcttg gaatcttatc
      661 aaccataatg tcctgtttat tttcaaaata tgtcatttgt ttatcataat gaacaaacaa
      721 atcatttatt gttgaaataa ttaaatcttg aacaatatcc ataatatcac catattctag
      781 gaatgcggat tccaaatcca cacttacaaa ttctgaaaga tgtcttacag tatgtgacgg
      841 ttcagctcta aaatatgaag aaatttcaaa tactctttca agtcccagag tgagttgttc
      901 cttgtataac tgtggactct gggctaaaaa tgccttcttt gagaaatatt caaaaccaaa
      961 aagatccgca ccaccttcag tggctgttcc aataattttc ggagtattaa cctccacaaa
     1021 catcttcgaa tttaggaatt tacgaattaa atgaagtaca tgtgatctag ttctaaaaat
     1081 attagaaatc ttaaagttcc tcaaatctag ggctcttgaa tctagtctct tatccaatga
     1141 tgatttgacc cttccggtag gatcaattgg aagagggtta attgcccttg acaaaagttc
     1201 cactttttct actctaactt cgaccttaaa attctctgct ctggtatctt gaatagttcc
     1261 atttaccacg ataacacttt gccttggtat ctccctaaaa cctgatagca gctttccagt
     1321 aagtactccc tgaaagtttc cagtcatatc tctaacgctt atgaatccaa tttttcccat
     1381 gtctctgaaa tcttcaagcc atccaacgaa tgttagattt tgaccaatgt ggtttttgtc
     1441 gattgatgaa gcaaatgttc tgttcataga atactgatgt tgcaacctat tactttcctg
     1501 cgatctcaac aacaagttct acttttctaa tttcatttac aatttttttt attttttcaa
     1561 ttatattaaa gaatttttcg taatctttac tctcaatagt aacctgtgtt acctggttcc
     1621 catccggcaa ccaaatcatg ttagttttca aaattcttat tggaaagaag agattttcta
     1681 gaaactttct aatcgagcta ttcgcttcaa caaaccatac ttttccgttg aattcctttt
     1741 caacagaact cattaattta tcattagagt ttatgtgact tacgtttgaa tcctttaaaa
     1801 taagcacata atcttcatca atcttttgag atcctattaa attcaattta tctatatctt
     1861 gattcttatg tgagagtttg ataagtttga ttgaagattc tacgtcaata gtggatagct
     1921 ccccattttt cagtctgctt tcacattttg gacacaaaac tcccgtcttg gcatcaaata
     1981 tgcagatggg tactttcaac taatcatcag gttgtctaat atttttacca tatatatgtc
     2041 caataggtgg ggatagacca aattagattc tataaaatag atacttatac ggttaagatc
     2101 gattaagact tgtttgaatt ttgctcttac cgtaaatagt ttaagtgtct attatttatc
     2161 ccgttttggt acagttaagg ctgttgatga tgttagtttt agtcttgaaa aaaatcagtc
     2221 gataggaatt gtgggtgaat ctggatgtgg aaagagtaca ttaggagcag cccttttacg
     2281 atcagttcca taccctggca aaatcgttga tggtcgaatt attctagatg gtcaagacat
     2341 taccaagata tcagatgatg aatttgataa aaagatcaga tggaagaaaa tttcaatgat
     2401 ctttcaagga gcccttaatt ccttagaccc agtatttact gttggatcac aaatgaagga
     2461 aatcttgaag caacatggtt actctacgga tgacctgcaa gtaattgcag attctttgaa
     2521 aagcgttctc ttagagccta gtgttacgaa aaagtatcct catgaattga gtgggggtat
     2581 gaagcaacga atttcaatag caatggcatt gttactgaat cccaagattt tggttgcaga
     2641 tgaacccact acctccttgg atgttatggt acaatctcag attatcaacc tcctaaaaaa
     2701 attaaaaaga gatcgcaata tgtcaatagt attcatttcc catgacttag gagtaatatc
     2761 agaagtatca gaaaccatag ctataatgta tcgtggacaa atagttgagt tgggaaaatc
     2821 ctatgaaatt tataaaaacc caaagcaccc ttacacagaa aaacttgtga catcaattcc
     2881 gaatattaaa aataaggaaa atagaccgca aaacctggga gaaaaatcac aagaaccaat
     2941 gagaacagag acgggatgta aattctatga tgattgccct tatgcaaaag aaaaatgtcg
     3001 taatgatcca cccatgataa atcacaaaga caggtatatt cgttgttggt tatacgagta
     3061 gacattaagt cttctctttt gaatcaggtt attttttcat acagattctt tagggggagg
     3121 gatacaaaaa cctaaatcat aagaatttta aactccattt atttaatagt ctacggaata
     3181 tgaaaattac actttctgca ataaaagcgg atattggagc cattggtggc catactagac
     3241 caagtgatga attagtagaa gcggtaaaca gagtagtaaa agagaactct aaattgttac
     3301 tggattatta cattggatat accggagatg atatacatat tatcatgacg catacgagag
     3361 gaacagacag caaagaaatt cataaaatgg catgggatgc attcacggaa ggaactaaaa
     3421 ttgcaaagga tcagggtttg tatggagctg gacaagattt gttgaaagac gctttttcgg
     3481 ggaatgtgag aggtatgggt cccggggtcg ccgaaatgga catagaagaa aggcctagtg
     3541 aagtcttttg tatttttgct gctgataaga ccgaaccggg agcttttaat tttccattgt
     3601 ggagaatgtt tgtagatgca agaagcagta caggtttgtt gataaacgaa aaattggcag
     3661 agggagttaa gtttcgaata atggatgtta tgacaggcaa agttgcgggc ctaaaattat
     3721 ggcaagataa gccagaatta gaaacggctt taatgtatcc tggtaggtat gtggtgcact
     3781 cgattttatc atccgatgga gaacagatag tttctgcatc aacggataga ttgcataaca
     3841 tagcaggaac ttatgttggt aaggatgatc ctattgcaat agtcagaact cagaaaaatt
     3901 ttcctgcaac tgaagaagca ggaagcgcgt tcaataatcc tcattatgtt gcaggaaata
     3961 caagaggaag tcatcacatg ccattaatgc cagttaagct caattctgct gccagtttga
     4021 attatgccat tccaattgta tcgtgtcttg tgttcagtat gcataatgga ctttttactg
     4081 gaccacatga tggttttgga acgtcagatt gggatctgca aaggctatgg gcctcagaaa
     4141 gagcaatgat tatgagaaat caaggattta ttcatcccgc tacactcgtt ccggatgagc
     4201 ttgaatataa caagggttac gaagctagga tggaaaaact aaatagcaag tttgaagacc
     4261 tctcctaaaa tttattatga acactttttc taatccactg gtaataaatc tcaaaaatta
     4321 caatgagata tcgggagata attcaataaa gattgttgaa gatgcaaaga acgtatcact
     4381 tttgaatcat aaagaaatca tcattgctcc accgctttct agtattttga ccctatccaa
     4441 aattaaagtt ccaataataa gccagcatgt tgacgatgca tccctcgggg cgacaacggg
     4501 atttgtcata cctgaaattg taaaatctta cggagcggta ggttcgataa taaatcatag
     4561 tgaacataaa atagaacatt cacaaattag aaatttagta agacgcctac gtgaattgga
     4621 tatgatttcg attgtttgtg ctgatgattt aaaagaagtg gaagcactct cgcaattttc
     4681 tccggatttc ctagccattg aacctcctga acttatcgga aaagggattg cagtatcaaa
     4741 ggcgaatcct tcaatcataa agaattctgt gcaagtggta aagggaattt ctttaacggt
     4801 taaggtcctt tgtggagctg gcatcgttga taaaactgat gtagagaagg ctcttgaact
     4861 tggggcagaa ggtatattga tttctagtgg agtagtaaaa tccccttcat ggtataacaa
     4921 aattctagag ttatcttcag ttctaaaata aaattaggaa ataaaaattt tgaggaattg
     4981 ttcctttata cgcctatttc ctttgctatc tttactattt tcttgccgtc gttagttagt
     5041 ttattgaaca ctttgttttt gacagttttt cgatcaacta atccacgctt ttgtgcctta
     5101 agaagaagct tatgtccata tccataggca cccaactttg ttaaaagttc tctagttgga
     5161 tattctctgc cggaaccaat tgtctttagt aactttacta acgccttttc ttcaacaagg
     5221 atttttaaca gtcttgtgtc tttc
//
LOCUS       DASUMD010000121         2128 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_471390, whole genome shotgun sequence.
ACCESSION   DASUMD010000121 DASUMD010000000
VERSION     DASUMD010000121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2128)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2128)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2128
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_471390"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            229..981
                     /locus_tag="VFX26_03375"
     CDS             229..981
                     /locus_tag="VFX26_03375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcdA"
                     /protein_id="HEX5573548.1"
                     /translation="MVDVGILISALAGAGSFFSPCILPILPAFISYLSGTTLNEIQDS
                     SGQSLRLKKTTRLNIFLNTVYFVLGFSLVFAVLGVFLNSVLMAVGLSFQNVLTSVGGL
                     VIIGFGVYLILSTRLRRLNFEKKFASIPKFKTSYLTSFVFGCAFAAAWTPCVGPILGS
                     TLTLAVTAPGAAYNSLLAYSLGLGIPFLVTGLFFSQATNLIKKMVKHLKYFNPAMGIM
                     LIVLGILVFTNNLSILGNFPLANEIINMERGP"
     gene            981..>2128
                     /locus_tag="VFX26_03380"
     CDS             981..>2128
                     /locus_tag="VFX26_03380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEX5573549.1"
                     /translation="MNKDNISALLTGVGVVALIVGFAIYFNNPEINKSSLGNSDQGIT
                     SDPNSNNGISNVGLSIDKSQFKKAPEFTDITSYINTNATKLSDLKGKVVLVDFWTYSC
                     INCIRTLPYLVDWNQKYSDKGLVIVGVHSPEFEFEKNIDNVKQAVTRFGIKYPVLLDN
                     DHGTWNAFQNSYWPRKYLVDSEGYIRYDHIGEGGYVETENAIKNLLSERSKQQGIEIS
                     KINQTKLTIPGEQSVDFNQIKTPELYFGYQFARAQLGNIEGFNPDKTVNYTLPSSNIK
                     PNVIYLQGLWKNNPDSMELVGPDGKIILSYSSKSVNIVAGGKGEITFKEDGKNTRTNN
                     PFKGNDLNTEGRLNIDGQRLYNIADHGDYGNHHIEINAKGSGFKLYTFT"
BASE COUNT          718 a          337 c          407 g          666 t
ORIGIN      
        1 atcgtttatg gaaataagaa tgcaatagaa acacaacaag acttggatgc actaagactt
       61 accgagataa agaaataatc atcatcaaaa ttttctatct ccaatttttt ttattggggt
      121 cgtatgaatt gtaaaacaat aaataatatt ttgattttga atttgtaata aatctggtgc
      181 caatatggac aaaagtatta atccaaaata gagtcactat ttatttacat ggtcgatgtt
      241 ggcatactta tttctgcact cgccggagca ggatcttttt tttcgccatg tatattacca
      301 attttacctg cctttatttc gtatctatcg ggcactacac tcaatgagat tcaagattca
      361 tcgggacaat cgctcaggtt aaaaaagaca acaagattaa acatcttttt gaatacggta
      421 tattttgttt tgggattctc gcttgttttt gctgtcttag gtgtatttct aaatagtgtt
      481 ttgatggccg ttgggttaag ctttcaaaat gtgttgacat ctgttggagg attagttatc
      541 ataggatttg gtgtctactt aatactctca acaaggttaa gacgtctcaa ttttgaaaaa
      601 aaatttgctt ctattcctaa atttaagacc agttacctta cttcgtttgt atttggatgc
      661 gcatttgcgg cagcctggac gccgtgtgtg ggccctatat tgggcagcac tctcacattg
      721 gccgttacag cgccaggagc tgcttacaat tcattattgg cttactcgtt agggcttggt
      781 ataccatttt tagtaacagg tctatttttt tcacaagcaa caaacctaat taagaaaatg
      841 gtaaaacatt taaaatattt taatcccgca atggggatta tgctgatagt acttggaata
      901 ttagttttta ccaataatct cagtatacta ggtaattttc ctctggcaaa tgaaattata
      961 aatatggaaa ggggacctta gtgaataagg acaacattag tgcgttacta accggagtag
     1021 gtgttgtggc acttatagta ggatttgcaa tttattttaa taatcctgaa ataaacaaat
     1081 cctcgcttgg gaatagtgat caaggaataa catccgatcc aaatagcaac aatggtattt
     1141 caaatgttgg attatcaata gacaaatctc aattcaagaa agcaccagaa ttcacagaca
     1201 ttacatcata tattaatacg aatgcgacaa agttatctga tctaaaagga aaggtggtgt
     1261 tagttgactt ttggacatat agttgtatta actgtattag aacgttacca tatcttgttg
     1321 attggaatca gaaatattct gataaaggat tagtcattgt gggagttcat agtccggaat
     1381 ttgaatttga aaaaaatata gacaatgtta aacaagcagt cacacgattt ggaataaagt
     1441 atcctgtatt gttggataac gatcatggaa cttggaacgc atttcagaac agttactggc
     1501 cacggaaata tcttgtggat tcagagggat acattcgata tgatcatatt ggggagggag
     1561 gctatgtaga aactgaaaat gccattaaga acctattatc agaacgatcc aaacaacaag
     1621 gtatagagat atcaaaaatt aatcaaacaa aattaaccat acctggtgag caatctgttg
     1681 atttcaatca aatcaagaca ccagaattat attttggtta ccaatttgca agagctcaac
     1741 ttggaaatat cgaaggattc aatccggata agactgtaaa ttatacatta ccgagctcta
     1801 atattaagcc taacgttatt taccttcaag ggttatggaa aaataatcct gacagtatgg
     1861 agcttgttgg accggacgga aaaataatcc tctcttactc gtcaaagtct gtcaatattg
     1921 tagcaggtgg aaaaggtgag ataaccttta aggaagatgg taagaatact cggacaaata
     1981 atccttttaa aggaaatgat ctgaatacag aaggtaggct aaatatagat ggccagaggc
     2041 tctacaatat tgcagaccat ggagactatg gaaaccacca cattgagata aatgcaaagg
     2101 gatctggctt taaattatat acattcac
//
LOCUS       DASUMD010000122         6935 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_582480, whole genome shotgun sequence.
ACCESSION   DASUMD010000122 DASUMD010000000
VERSION     DASUMD010000122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6935)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6935)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6935
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_582480"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..339)
                     /locus_tag="VFX26_03385"
     CDS             complement(<1..339)
                     /locus_tag="VFX26_03385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573550.1"
                     /translation="MSFSDLYSDLLFNIKYQKSEIQKSLKKSPNGAYQLVNQLSEFTG
                     SRHHVTLNIHFPDPKKIYNVEDYGTENLGLVVDKFRKRFPIPRERIKQKAIEFLGNVT
                     PQDAYMYEGKE"
     gene            518..1138
                     /locus_tag="VFX26_03390"
     CDS             518..1138
                     /locus_tag="VFX26_03390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573551.1"
                     /translation="MFATDSSSERATSIEDYQHTCTEFITDISRDYKDWVDRYQLSNE
                     ESSKRKESIDNVVATTNNWIRNFCNTIKKVDIVMNDGINKMAENTAGYPFHFEVSVNS
                     VKRYSKHSQGTVVLKVNAIPQEGRMVRLGKYSKNELFLISSSSPVSPTVSEQSMNAVD
                     ILDDYITIDASSCEKGSIVSITIIVEEVRDDYVSESRGYSTVIMII"
     gene            1337..1411
                     /locus_tag="VFX26_03395"
     tRNA            1337..1411
                     /locus_tag="VFX26_03395"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1373..1375,aa:Gly,seq:gcc)
     gene            complement(1429..1884)
                     /locus_tag="VFX26_03400"
     CDS             complement(1429..1884)
                     /locus_tag="VFX26_03400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573552.1"
                     /translation="MPKRYFYTLDEFKKNLHRYDASLIDYNENPIPCIHIESKRYDEI
                     IRKVAGKKLAVDVLLDLFHDSKHVFVDVLMTYLDYGFDENYLFFANKMPEFFEALANT
                     GLIAIAPTDSESISQGNMLVIQIPRKDSAESAYNQMMEIIGKPKKSHFI"
     gene            2203..2802
                     /locus_tag="VFX26_03405"
     CDS             2203..2802
                     /locus_tag="VFX26_03405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573553.1"
                     /translation="MSAEELVLEKILSTGSNGIKKSELKREFTSFDLDQTLENLVNDG
                     KICVDKKGAAYYCWTSEVYLKHLNNVDPKFRILIERIKFIERKLDIHSNSVKDAINGL
                     IELLKVESTESHKSLVNLDNFKIEFDTVLSRSNSSIGWIELGQVRDELGQKFDLSKNE
                     FYELVEQLVNAYHNEYELSTGGKEGLILRGLLHGYVRGI"
     gene            2799..4466
                     /locus_tag="VFX26_03410"
     CDS             2799..4466
                     /locus_tag="VFX26_03410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573554.1"
                     /translation="MRMYPYGLKLNPYPSSPTPSYVDSQILGGRTHKDAKQAIITCIS
                     DLYSKLEGTSPTDRDFRLITMIQDVGSGKTHLAFHIKGLPDLIEKAVTSYVDLSQVSP
                     RDIHNIYDSILGGFSYDDIESLRRSVLYFLCKKADDYGSSVRKAFNYGFLDNLSGNKH
                     LKQRAEEILKGKQKLNLQYVSEILSFGFSEIQIEIIKSLLEDRLRTDVSKIRSLEGVI
                     NSLSAISDINLKLLNKITIFQFDEFDSKRESLEFIKAIINAHIPSSILMLILTPSSYD
                     EIKKENSSVFDRLEKANYKIDLAGSHTLGELKDIIFEYIKHYDEKKYFTPDHENDLET
                     KIRLVYDEFPDFRNVRSMLNIFYHATEQASKRGSFIIDESIIDDTIKIIYPGSKIRGS
                     LMNVPLSDFIQIKKSVNSMDTIEPDIREAVRNLLTLTNYEGYVNELNFDNLVGEGIDI
                     TYNDSYGSKIAVSVVIKDEPIKTQAQITNASKSLNIVDKLVVLTGNTNRIFGGTSRNG
                     NDVTTIVNMDNTKIVDLIYFNKKYKMREILDDDLERAITLARSIKLC"
     gene            complement(4504..5673)
                     /locus_tag="VFX26_03415"
     CDS             complement(4504..5673)
                     /locus_tag="VFX26_03415"
                     /inference="COORDINATES: protein motif:HMM:NF015338.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HEX5573555.1"
                     /translation="MEFSVAFWNLQNLFDVYSSEIATDLEFIPEKGWTAEVLNKKIEN
                     LSKPLRTMNNGNPPDLVGFCEIESEKLARDLCENVQSSYYEVAKYIDGSDIRGIDTCL
                     VYSKDIFDCIETKSFRINFRYPTRDIFLARLRIKENNAELLVLVNHWPSRRGKKDGLD
                     QYDTEFSRCMVAENCGRIVDDLLKIPFEEIKYLPHEILSDKSYVDMINTRWNKNVLLM
                     GDFNDDPFDKSISKFLRAKNDKEIFTELNESLEIFRNTDRDKTDKQHYMEYTPPLYNC
                     MWNLSGFSYYHWRNNSTNLFDQFIISRGLLLGVQKLKMNLENVRVFNEGLTIGENLSN
                     DYFVPKDPERYHPAQRGIPMTFDYLRSNGRIPKHRIPNTGFSDHFPIYSTIGTFP"
     gene            5915..>6935
                     /locus_tag="VFX26_03420"
     CDS             5915..>6935
                     /locus_tag="VFX26_03420"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HEX5573556.1"
                     /translation="MAFLSVFSYEHTFLSALSPKPIDNKKTVDKVIIFIFSDGLKTQF
                     TNAKPILDKYGFKGTFDVVCNNVDNKVGNMNWKEIKRLHNEGHDIGSHGMSHVRLTNL
                     SKDSVEFEVGESKKCLEDYGIKPTSFEYPFSTGSEDKKIVEIVAKHYEFATRGNDPLM
                     FLRCDGLEQYGQKDCKTYTDNGTPTYANKYSIRNWSHDFEIVENSYSDQEALQRFIEV
                     VNSQSIYNKDGIIEAIPIIMYHDIGDTKEDSVTDVALFEKEMKYLHDSKFKVITISDL
                     AYDEKNHSLYIKDLESETALPVENVTAPTEVPTINATTNVTAPTEVPTINATTNVTAP
                     TEVPTI"
BASE COUNT         2386 a         1145 c         1193 g         2211 t
ORIGIN      
        1 ttctttacct tcgtacatat aagcatcttg tggcgtcaca tttcctaaaa attcaatggc
       61 cttttgtttg atcctttctc gaggtatcgg aaaacgcttc cggaacttat ctaccaccaa
      121 gcccaaattt tctgtaccat aatcttctac attgtaaatt ttttttggat ctggaaaatg
      181 aatgtttaag gttacatgat gtcttgatcc agtgaattca gacaactgat tcacaagttg
      241 gtatgcacca ttcggacttt tctttaacga tttttgaatt tcgcttttct gatacttgat
      301 gttaaataat aaatctgaat acaaatcaga aaaactcatt tgttgaataa aaacgtcgca
      361 ttacatatat ttttgtactg tatttgtcat tatggcaaaa ataaaacatt ttaggttgaa
      421 tatagcttta atatttgatt tcagttatac ccctcgattt tggtccaagt actgacgaca
      481 cttaaatctt atttagtaaa tattataaca caatcatatg ttcgcaaccg attctagttc
      541 tgaacgcgct accagtattg aggattatca acacacatgt accgaattca ttacagacat
      601 tagtagagac tataaagatt gggtggatag atatcaatta agcaatgaag aatcttccaa
      661 aagaaaagaa tctattgata atgtcgttgc aaccactaat aactggataa gaaacttttg
      721 taatactata aagaaggttg acattgttat gaatgatggt ataaacaaaa tggccgaaaa
      781 cactgccggc tacccgtttc attttgaggt ttctgtaaat tcagtgaaaa gatattcaaa
      841 acacagccaa ggtacggtag tcctgaaggt aaacgctata ccgcaagagg ggagaatggt
      901 tagattagga aaatatagca agaatgaatt gtttctcatc tcatcaagtt cgccagtatc
      961 acctacagtg agtgagcaaa gtatgaatgc tgttgatatc ttggatgact acataacaat
     1021 tgatgcatca agttgtgaaa agggcagtat tgtttctatt actatcattg tcgaagaggt
     1081 aagagatgac tacgtttccg aaagtagagg gtattccact gttatcatga tcatttgagt
     1141 taccaattaa agagagaaaa atcaatcgaa cttatacgat acgaatttga tgattagaac
     1201 cgtttattat tcaaccaatt tacggacact ctactctgtt tttgaatgtc gcatttatca
     1261 tgtttctgcc aaatactgaa tgggatctaa agaaacagtt aaaataagca atattttttt
     1321 catcactaga tatcatgcga cggtcgtcca gtttggtcta ggacatcaga ttgccaatct
     1381 ggtaacccgg gttcaaatcc cggccgtcgc aattagtttt tccgtttttc agataaagtg
     1441 tgactttttt ggtttgccta ttatttccat catctgattg tatgcgctct ccgcgctatc
     1501 ttttcttgga atctgaatta cgagcatgtt tccttgagaa atactttcag aatccgtcgg
     1561 agctatggca attaatccag tatttgccaa agcttcaaaa aattcaggca ttttatttgc
     1621 aaaaaaaagg tagttttcgt cgaaaccgta gtcaaggtaa gtcatcagta catcaacaaa
     1681 tacgtgcttc gagtcatgaa ataaatctaa cagtacatca acagctagtt ttttaccagc
     1741 aacctttcta attatttcgt catatctttt ggattcaata tgaatacatg gtattggatt
     1801 ttcattgtaa tcaattaaag atgcgtcata tctgtgcaaa ttttttttaa actcatcaag
     1861 tgtatagaaa tatctcttgg gcatttcgta gaatatgtat tacgattgat cgagtcattt
     1921 attcgttcat tagtttatta gttcattcat taatttggca attcatcgat ttttcccatt
     1981 aatcactttt tctatgatat cgataatctc agcagaacag aagactatgg tcagttaccc
     2041 tagtgctttc atcatctaaa taatcagcaa agagtaatct tcatcccatt gtaaatatct
     2101 aaaaaataaa ctaataacat tatctttaat ctaaaattct tgataatggg taatcagttc
     2161 tattacaccg caatttaaat aaaaaaaaca tgataatttt ccatgtcagc agaagaatta
     2221 gtgttagaga aaatactttc gacaggttca aacggaataa aaaaatctga attaaaaagg
     2281 gaatttactt catttgatct agaccagaca ttagagaatc tagttaatga cggaaagatc
     2341 tgtgttgata aaaaaggggc ggcgtattac tgctggacgt ctgaggtata tcttaaacat
     2401 ctaaataatg tcgatccaaa atttagaatt ctaattgaac gcataaaatt cattgaaaga
     2461 aaactggaca ttcactcaaa cagtgtgaag gatgcaataa atggtttaat tgaactttta
     2521 aaggttgaaa gtacagaatc tcataaatct ctagtcaatc tggataattt caaaatcgaa
     2581 tttgatacag ttctctcaag gtcaaacagc tcaataggct ggattgagct cgggcaggtt
     2641 agagatgagc taggccaaaa attcgattta agcaagaacg aattttatga actagttgag
     2701 cagctagtca atgcctatca taatgaatac gagctgtcta ctggaggaaa agaggggttg
     2761 attttgagag gtttactcca tggatatgtg agaggcatat gaggatgtat ccctatggat
     2821 taaaattaaa cccataccca agcagcccta caccttctta tgtcgatagt caaattcttg
     2881 gaggaaggac gcacaaggat gcaaagcaag ccataattac ttgtatttct gatctttatt
     2941 caaaactaga gggaacaagc ccaacagaca gagattttag attgataacc atgattcaag
     3001 atgtaggttc gggaaagacc catcttgcgt ttcacattaa gggattgcca gatctcattg
     3061 aaaaagcagt aacatcctat gttgatctgt ctcaagtttc tcctagagat atccataata
     3121 tttatgattc aatactcgga gggtttagtt atgatgatat cgaaagccta agaagaagtg
     3181 tactatattt tttgtgcaag aaggctgatg attatggaag ctctgtgagg aaggcattta
     3241 actatggatt tttggataat ttgagtggta acaaacatct caaacaaaga gcagaagaga
     3301 ttctgaaagg gaaacagaaa ttaaatcttc aatatgtatc tgaaatcctt tcatttggat
     3361 tttccgaaat acaaattgaa atcatcaagt cgttactaga agatagattg agaacagatg
     3421 tttcaaaaat taggtccctt gaaggcgtga taaatagttt gagtgcaatt tctgacatta
     3481 acctaaaatt attgaataaa ataacaatat ttcagtttga tgaatttgat tcgaaaagag
     3541 aatctttaga atttattaaa gcaataatta atgcacatat accctcatcc atactaatgc
     3601 tgatacttac accttcttca tatgatgaaa tcaaaaaaga gaattcttca gtctttgaca
     3661 ggttggagaa ggcaaattac aagattgatc tggcaggttc tcacactctt ggtgaactaa
     3721 aagatattat ctttgagtat ataaaacatt acgatgagaa aaagtatttt acacccgatc
     3781 atgagaatga tcttgaaaca aaaattagac tagtttatga tgagtttcca gactttagaa
     3841 atgtaagatc aatgttgaat attttttacc atgcgacaga acaagcttca aagcgaggtt
     3901 cattcataat agatgagtca ataattgatg atacaataaa aattatctat cctggatcca
     3961 aaataagggg aagtttaatg aatgttcctc tatccgactt tatacagata aagaagagtg
     4021 ttaatagtat ggatacaata gaacctgaca tacgtgaagc cgttagaaat cttttgactt
     4081 taacaaacta tgaaggatat gtaaatgagc taaattttga taatttggtg ggtgagggaa
     4141 tcgatattac atacaatgat agttatggat caaagattgc tgtatccgtt gtcattaagg
     4201 atgagccaat aaaaacccaa gcacaaatca caaatgcatc aaagtcgctc aatattgtag
     4261 acaaacttgt agtgttaaca ggaaatacaa atcgcatatt tgggggaact tctagaaatg
     4321 gaaatgatgt tactaccatt gtaaatatgg acaataccaa aattgtagat ttgatatact
     4381 ttaataaaaa atataaaatg cgggaaattt tggatgatga tttagaaaga gcaatcactc
     4441 tggcccgctc aataaagtta tgttaagggt gttaggttag ctattcaagg aactattacc
     4501 tccttaggga aatgttccaa tagtactgta tattggaaaa tgatcactga agccggtatt
     4561 tggtattcta tgcttgggga tgcgtccatt gcttctcaaa tagtcaaacg tcatgggaat
     4621 ccccctttgg gcaggatgat atctttcggg atcctttgga acaaaataat catttgagag
     4681 attttctcca atagttagtc cttcgttgaa caccctaaca ttttctagat tcatttttaa
     4741 tttctgaacg cctaacaaga gaccccttga tataataaat tggtcaaaga gatttgtaga
     4801 attatttctc caatgataat atgagaatcc agaaaggttc cacatgcaat tatagagagg
     4861 cggtgtgtat tccatgtaat gttgtttatc tgttttatct ctgtcggtat ttctgaagat
     4921 ctccaacgat tcattcaatt cagtgaatat ctctttatca tttttggcac gaagaaattt
     4981 tgaaatgctc ttgtcaaaag gatcgtcatt aaaatctccc atcaagagta cattcttgtt
     5041 ccacctggta ttaatcatat caacataact tttatctgaa agaatctcat gtggcaaata
     5101 tttgatctcc tcaaaaggaa tttttaagag gtcatcaaca attctgccac aattttctgc
     5161 taccatgcat cttgaaaatt ctgtatcata ttgatctaac ccatctttct tccctctcct
     5221 agaaggccaa tgattaacca aaactaacag ttcagcatta ttctccttta ttcgtaatct
     5281 tgccaaaaat atatctcttg ttggatatct aaaatttatt ctaaatgatt tcgtttcaat
     5341 gcaatcaaag atatcttttg aataaaccag acaggtatca atccctctta tgtcagagcc
     5401 atctatgtat tttgcaactt cgtagtaact agattgcaca ttctcgcaca aatcccttgc
     5461 aagtttttca gattcaatct cacagaaacc caccaaatct ggaggattac cattattcat
     5521 agtccttaga ggtttactca aattctcaat ttttttattg agaacttccg ctgtccatcc
     5581 tttttctgga ataaactcaa gatcagttgc tatttcactt gaataaacat caaaaagatt
     5641 ttgtaaattc caaaacgcaa cactaaattc cattaaacta attgtatcag atagtctaaa
     5701 ttagcatttc tataaaccca tgaaatcttt aaacggagag ttgcaataac ttgaaactat
     5761 caaacgttat tggaatcgga taaaaacttt gtcattgtaa taccatcttg gtattgatat
     5821 ctttttatta tatcaaatac gaaccagtta tttaggattg aagaactgtc gtttttttgc
     5881 caatattttg ccattaatac tagtgggttt tttaatggcg tttttatctg tcttttcata
     5941 tgagcatacc tttctttcag ctttatctcc gaaaccgatt gataacaaga aaactgttga
     6001 taaggtaata atttttattt tctccgatgg tctcaagact cagttcacta atgcaaaacc
     6061 aatacttgat aaatatgggt ttaagggaac ttttgatgta gtatgtaaca atgttgataa
     6121 taaagttggg aatatgaatt ggaaggagat taagagattg cataacgaag gacatgatat
     6181 aggatctcat ggcatgtctc atgtacgtct cacaaatctt tcaaaagatt ctgttgaatt
     6241 cgaagttgga gaatcaaaaa aatgtcttga agactatgga ataaaaccta caagctttga
     6301 atatcctttt agtacaggat cggaggataa aaaaatagtc gaaatagttg caaaacacta
     6361 tgagttcgca accagaggaa acgatccact gatgttttta agatgtgatg gactggagca
     6421 atatggtcaa aaagattgca aaacttatac tgacaatgga actccaactt acgctaacaa
     6481 atattccata agaaattgga gtcacgattt tgaaatagta gaaaattcat atagtgacca
     6541 agaggcattg caaagattca ttgaagttgt gaatagccaa tcaatatata ataaagacgg
     6601 aattatagag gcaataccaa taataatgta ccatgatatt ggcgatacca aagaagattc
     6661 agtcactgac gtagctctat ttgaaaagga aatgaagtat cttcacgata gcaaatttaa
     6721 ggtaataacc atatctgatc tcgcatacga tgaaaaaaat cattctttat acataaagga
     6781 cctcgaatca gaaactgcat tgccagtaga aaatgttact gctccaaccg aagttccaac
     6841 aataaatgct acaactaatg ttactgctcc aaccgaagtt ccaacaataa atgctacaac
     6901 taatgttact gctccaaccg aagttccaac aataa
//
LOCUS       DASUMD010000123         3665 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_914676, whole genome shotgun sequence.
ACCESSION   DASUMD010000123 DASUMD010000000
VERSION     DASUMD010000123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3665)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3665)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3665
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_914676"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..421
                     /locus_tag="VFX26_03425"
     CDS             <1..421
                     /locus_tag="VFX26_03425"
                     /inference="COORDINATES: protein motif:HMM:NF014788.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AIR synthase-related protein"
                     /protein_id="HEX5573557.1"
                     /translation="LECSLGEELLKPTRIYVKPILEILKNERNSIHGLAHITGGSFSK
                     LSRLNNKVNFNLDDLPKQGDIFSLIQQAGKISNEEMYSTFNMGIGFCIIVSKSRVDNL
                     RQILEKNKVQYHQIGYITKGKGAVSMTLNGIKYRLNG"
     gene            complement(484..1746)
                     /locus_tag="VFX26_03430"
     CDS             complement(484..1746)
                     /locus_tag="VFX26_03430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2 subunit
                     gamma"
                     /protein_id="HEX5573558.1"
                     /translation="MHWKETLPEWYVKQYGYQPCVNIGTSGHVDHGKTTLVESITGVW
                     TSGHSEELRRGITIKVGYADAAFYKCKNCPPPICYSTQPECKNCGQKSEFERVVSFVD
                     SPGHESLMANMLSGAALMDGAILVTAANEKVPQPQTREHLLALQTLGIKQIVLVQNKV
                     DLVSYEETIENYKEIKNFVKGSVADTAPIIPVSAQHKLNIDALIEAIQINIKTPERSK
                     NSEPLMHVLRSFDINKPGLPIGEVKGGVIGGSLIQGDFETGDEIEIRPGLFDEKKGKY
                     EPIKSKISSLGTGAGIVQVVKPGGLVALGTTLDPYIVKSDSLIGSLVGLPDSLPPDIY
                     DVTIEINLFETAVGTQELVKVDPIKIKESLRLNIGTAATLGTVTHVKDRSVEIKLKKP
                     VCMVSNNRVAISRRIADRWRLIGSGVAS"
     gene            complement(1831..2223)
                     /locus_tag="VFX26_03435"
     CDS             complement(1831..2223)
                     /locus_tag="VFX26_03435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S6e family ribosomal protein"
                     /protein_id="HEX5573559.1"
                     /translation="MTQFKIIISDKKGKSVSKELKDKEAQPLVGLRVGEIVDSSVVGI
                     PSGKIELRGGSDKSGTPIRSDVHGGVKKYVLLSKGAGMRDDREGIRKRKLVRGNMITE
                     EIYQINCLLLEGNLPLTAETTDSKKTEE"
     gene            complement(2564..2737)
                     /locus_tag="VFX26_03440"
     CDS             complement(2564..2737)
                     /locus_tag="VFX26_03440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-domain-containing protein"
                     /protein_id="HEX5573560.1"
                     /translation="MLDAKCPKCNNKAQVSDDMRSIQCKNCGYSDNYENYMEIMKSKA
                     ENMADNYQFRGNV"
     gene            complement(2781..>3665)
                     /locus_tag="VFX26_03445"
     CDS             complement(2781..>3665)
                     /locus_tag="VFX26_03445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573561.1"
                     /translation="AKNHIGSKFQDVIKHVNKDSSIINTVPAGFGANNENITLIEHRT
                     GLSVGKSIFYHYMPISSISSTVFNSIIGTRSELNPNLESMLSELYPDSTLKVVDIESA
                     EYFYCIRILRHYGLMSPIFEICKFADSSFQSQMMGSHSFDDLYLDDLVSGLFDLNTIL
                     SSLTGISPLTLLLKGNIATVENYIKYLTEQIKIILKKYELKASKTKAIISWTFDPNEM
                     RGDRLEIISRLESRLKDYVGDVERHDSMFDFYSSEKKLIVVSCSKIDFERINKNNPNS
                     DIIIVKATPLFGQSSIHS"
BASE COUNT         1104 a          706 c          606 g         1249 t
ORIGIN      
        1 tcttgaatgc tctttaggcg aagagctatt gaaaccaaca agaatatacg tgaaacccat
       61 acttgagatt cttaaaaacg aaagaaattc gattcatgga cttgctcata taacaggagg
      121 atcatttagc aagctatcga ggctaaataa caaagtcaat tttaatctag acgatcttcc
      181 aaaacagggc gatattttta gtctcattca gcaggctggt aaaatttcta atgaggaaat
      241 gtattctact tttaatatgg gaattggatt ttgtattatt gtttcaaagt cacgggtgga
      301 caatttgagg caaatattag aaaagaacaa agtacagtat catcaaatag gatacatcac
      361 caaaggaaag ggtgctgtat ctatgacatt aaatggaata aaatataggc ttaatggctg
      421 accaggaatg aaaattctat gagctaatgt actagtgata gattgttttt tacaccgaaa
      481 tgcctatgat gcaactcccg agcctatcaa gcgccacctg tcggcaattc ttctacttat
      541 tgcgactctg ttattactga ccatacaaac tggtttcttc agtttaattt ccacagaacg
      601 atcttttaca tgagtaacag taccgagggt tgctgcagtt ccaatgttca gacgcaatga
      661 ttcttttatt ttaattggat caactttaac gagctcctgc gttcctaccg cagtttcaaa
      721 caagtttatc tctatagtaa catcataaat gtccggagga agtgagtctg gaagtcctac
      781 caatgagcct attaatgaat cactcttaac tatgtatgga tccaaagttg ttccaagtgc
      841 taccaagccc ccaggcttta caacttgtac aattcctgca ccagtaccta gtgatgagat
      901 ctttgacttt attggttcgt attttccttt cttttcatca aatagtcccg gtcgtatttc
      961 gatttcatca ccagtctcaa aatctccctg gattagcgaa ccgccaatta ctccaccttt
     1021 cacctcgcct ataggcaaac ctggtttgtt aatatcaaat gatcttagca catgcattaa
     1081 gggctcagaa ttttttgatc tttcaggtgt tttgatatta atctggatag cttctattaa
     1141 agcatcaata tttaatttgt gttgtgcaga aactggaatt ataggggcgg tatcggccac
     1201 actcccttta acaaaattct ttatttcttt ataattctct attgtttctt cataagatac
     1261 caaatcaact ttgttttgaa ccaacacaat ctgtttaatg ccaagtgttt gtagagccaa
     1321 caaatgctct ctagtttgcg gttgaggtac cttttcattt gctgctgtca ctaaaattgc
     1381 tccatccatc aaagccgctc ctgagagcat atttgccatt aaactctcat gacccgggga
     1441 atctacaaag ctaactactc gttcaaattc agatttttgt ccacagttct tacactcagg
     1501 ttgagtcgaa tagcatattg gtggaggaca gttcttacac ttgtaaaaag cagcatcggc
     1561 atatccaacc tttatggtaa ttccccttct taattcttca ctatgtccgc ttgtccaaac
     1621 gccggttatt gattcgacta gggtagtttt tccgtggtcc acatgaccag atgttcctat
     1681 gttgacacat ggttgataac catattgttt aacgtaccat tcaggcagag tttccttcca
     1741 atgcaatatg tatagtgaaa ttttacagag atattaattt aattatgatg gtagtatttg
     1801 gaatgatatt gatttttatt taacagatgc ctattcttcg gtctttttag agtccgtcgt
     1861 ctcggcggta agcggtaagt ttccttccaa gagtaaacaa tttatctggt atatctcttc
     1921 tgtaatcata tttcctctta ccaattttct ttttctgatc ccttcacgat cgtctctcat
     1981 tcctgccccc ttcgataata acacatattt ttttacacca ccatgaacat cactgcgaat
     2041 cggtgttcca gatttatcac taccccctct tagttcgatc ttaccagaag gtataccgac
     2101 cactgaagaa tctacaattt ctcctactct cagaccaact aagggctgag cctctttgtc
     2161 ttttagctct ttgctaacac ttttgccctt cttatcggaa attattatct taaactgagt
     2221 caatatgaaa tcaacctgta atacagcgtt aattaatctt tacgaccgga atcatcttaa
     2281 atactttaat aaatgttatt acgaaaaata tatcaagtgc aaagcgagaa aaaaaaggaa
     2341 gatgaaaaag aaagaaggtg ctttagatgc ggattcacaa tgtttagtat tcaaagctgt
     2401 catcttaggt gtgaaaattg cggatcggag ttgacttgtt ctgataaagg tttgttttgg
     2461 taaaatcaaa aatcaaaaaa ttcaatcaaa tcgaataatc tacaattttt tcaattatgc
     2521 actagaccta aagaaaagtg aattaaagct agcaacctta acttcaaacg ttacctctaa
     2581 actggtaatt atcggccata ttctctgcct ttgacttcat tatctccata taattttcat
     2641 aattatcaga ataaccacaa tttttgcact gtatagaacg catgtcatca cttacttgtg
     2701 ctttgttatt gcactttggg cattttgcat ctagcaaacc aacactagat catctcttct
     2761 tgttattata ttttaggtga ttagctatgt atactagatt gtccaaataa aggagttgcc
     2821 ttgacaatta tgatatctga attaggatta tttttattta ttctttcaaa atcaatcttg
     2881 gagcaagaaa ccactatgag ctttttttca cttgaataaa agtcaaacat ggaatcgtgt
     2941 ctctctacat ctcctacata gtcttttagt cttgattcca atctggatat tatttccaat
     3001 ctatctcctc tcatttcatt aggatcgaag gtccatgaaa ttatcgcttt tgttttacta
     3061 gctttcaatt catacttctt aagaataatt ttgatttgtt cggtcaagta ttttatgtaa
     3121 ttttcaaccg tggcaatatt tcctttcagt agaagtgtta gaggagaaat cccagtgaga
     3181 gatgacagaa tagtgttcaa atcaaataag ccgctcacga gatcgtcaag atatagatca
     3241 tcgaaggagt gacttcccat catctgcgat tgaaatgagg aatcagcaaa tttacaaatt
     3301 tcaaaaattg gtgacattaa accataatgt cttaagattc ttatacaata gaaatattct
     3361 gcggattcaa tatctactac tttcaatgtg ctgtcgggat aaagttcgct taacatgctt
     3421 tcaagattag gattcaattc tgatcgtgtt ccaataattg aattaaatac tgttgaagaa
     3481 atggaactga ttggcatata gtgatagaaa atgctctttc caacactaag acctgttctg
     3541 tgttcaatca atgttatatt ttcgttattt gcgccaaaac ctgcagggac tgtgttaatt
     3601 atggagctat ccttgtttac atgttttatc acgtcttgaa atttagatcc aatgtgattc
     3661 tttgc
//
LOCUS       DASUMD010000124         2214 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_363995, whole genome shotgun sequence.
ACCESSION   DASUMD010000124 DASUMD010000000
VERSION     DASUMD010000124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2214)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2214)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2214
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_363995"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            64..140
                     /locus_tag="VFX26_03450"
     tRNA            64..140
                     /locus_tag="VFX26_03450"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:98..100,aa:Ala,seq:ggc)
     gene            258..1001
                     /locus_tag="VFX26_03455"
     CDS             258..1001
                     /locus_tag="VFX26_03455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573562.1"
                     /translation="MYFINWQREISIKKIDGKKVVVKRNKISKNLHDYLIVISYSILS
                     ILLAHPSGPPELGNKMTSNEGTEMREKLRSIGIPTPSLILISDNLLIEEFIPGGNLHE
                     ALSNGSDFSLAFSAGIITGRLHKSGYSFIDNKSQNFLVSSMRKVLRTDLAFIQKKNSI
                     FARSMDIGSFLGSLLGLDIRKYKVVQDAFCEGYYSEVKTPIPYLSIPLRNILGFGLSL
                     SSNWIVNVLQDSEKLVSYRRKFGFSVKSP"
     gene            complement(960..1346)
                     /locus_tag="VFX26_03460"
     CDS             complement(960..1346)
                     /locus_tag="VFX26_03460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573563.1"
                     /translation="MDEFEKDFPDFDWKNTPAYKHPGGKDCPCPKHEYIREQISVAKN
                     ISANKESNSKHRAQITLKFCPDHYNVYFDEVIPSMPLKYRLMTKFALKIRAILIQKLT
                     YMQSDQCFYCKFGSGGFDRKTELPPI"
     gene            1454..>2214
                     /locus_tag="VFX26_03465"
     CDS             1454..>2214
                     /locus_tag="VFX26_03465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573564.1"
                     /translation="MLKEHSTDGNNKSSMVTNIDRDRNNIDGSNKYVDSNLSTLTKFK
                     KTLLAEQKTGEEKVESLNQSIESTKIEIDKQRMDLEELRTQLKKVNEMKESEYTKFIE
                     LKNNLMEIRNKMKNLDEKANDTVGHKLRKERFDMINLAKNLDQIERDIQTKKLTKDEE
                     RRLVARSKEMATRLHSLKMIHKKEDDYRSISIQYDKLKTKINSIFQQKSELGDKIGRL
                     KGSLDKLLNQRESLYEERRKARSELREAEAKLEMV"
BASE COUNT          809 a          348 c          421 g          636 t
ORIGIN      
        1 gttggaatca taaaaacata attaacctaa agatattaat gtgtaaatct aagtcgaaat
       61 catgggccga tcgtctagtc cggtaggata cggcattggc attgctgagg tcgtgggttc
      121 gaatcccact cggtccacca ttaatctata tattataatt cacctacggt caacaagttt
      181 ttttcaattc tcagggaagc tgctatttac gaagaaccga taatgtattt attcattgga
      241 taaataattg tacaatattg tatttcataa attggcaacg agaaatatcc attaagaaga
      301 ttgatggtaa aaaggttgtt gtcaaacgga ataagataag caaaaatttg catgattacc
      361 ttattgttat ttcgtattct attctctcaa ttcttcttgc gcatccctca gggccccccg
      421 agcttggtaa caagatgaca tcaaacgaag gaactgaaat gagggaaaaa ttacgttcaa
      481 ttggaattcc tacaccatcg ctaatattga tttctgataa tttgttaata gaagaattta
      541 ttccaggggg aaatcttcac gaagctctat cgaatggaag cgatttttca ttagcattta
      601 gtgcaggaat tatcacagga aggctccaca agtcaggcta ctccttcata gataataaat
      661 ctcaaaattt tcttgtaagt tcaatgagaa aggttttgcg aactgacctg gcttttatac
      721 agaaaaaaaa ttcaattttt gcaagaagta tggacatagg ttcatttctg ggcagcttgt
      781 tgggactgga tattagaaag tacaaggtag tacaagatgc tttctgtgaa ggatattact
      841 ctgaagtaaa aaccccaatt ccttacctct caataccttt aagaaacatc ctgggctttg
      901 gactaagcct cagttcaaat tggatagtca acgttctaca agattcagag aaattagtat
      961 catataggag gaagttcggt ttttctgtca aatccccctg agccgaattt acagtagaag
     1021 cattgatcag actgcatgta agtcaacttt tgtatcaaaa tagcccttat ctttaatgca
     1081 aattttgtca tcaatctata ctttagaggc attgaaggaa tgacttcatc aaaataaacg
     1141 ttataatgat ctgggcagaa ctttaaggta atttgtgccc tatgtttact attagattcc
     1201 ttgtttgcag aaatattttt tgctacacta atttgttctc taatatactc atgttttgga
     1261 cagggacagt cttttccccc tggatgtttg taagcaggtg tatttttcca atcaaaatct
     1321 ggaaaatctt tttcaaactc atccataata tactaacatt agtgcccact tatcagatat
     1381 aaagatatat ctgaatcgaa gcgtacttta atgataaagg ttatattttg aatattttaa
     1441 aaacacgata gaagtgttaa aagagcatag cacagacgga aataacaagt cgtccatggt
     1501 tacaaatatc gacagggata ggaataatat tgacggatca aacaagtatg ttgattcgaa
     1561 tttaagtacc ctgacaaaat ttaagaaaac acttcttgca gagcaaaaaa ctggcgaaga
     1621 aaaggtagaa tcgcttaatc aatcaattga atctacgaag atagaaattg ataagcaaag
     1681 aatggaccta gaagaactca gaacgcaact aaaaaaagta aatgagatga aggaatcaga
     1741 atatacaaag tttattgaac tcaaaaacaa tttgatggaa attcgaaata agatgaaaaa
     1801 tctagatgaa aaggccaatg acacagtggg gcacaagttg cgaaaagaga ggttcgatat
     1861 gataaattta gcaaaaaacc tggatcaaat tgaaagagat attcaaacga aaaaactaac
     1921 taaagacgaa gaacgaagat tggtcgctcg atcaaaagaa atggccacaa ggttacattc
     1981 gcttaagatg atccacaaga aagaggatga ttatagatca atttctatcc aatatgacaa
     2041 gttgaagacc aaaattaatt ctatttttca acaaaaatca gaattaggag acaagatagg
     2101 caggttaaag ggcagtttgg ataaattgct taatcagagg gaaagccttt atgaagaaag
     2161 aaggaaagcc aggagtgaat taagagaagc tgaagctaaa ctagagatgg tgga
//
LOCUS       DASUMD010000125         5256 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_806482, whole genome shotgun sequence.
ACCESSION   DASUMD010000125 DASUMD010000000
VERSION     DASUMD010000125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5256)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5256)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5256
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_806482"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(155..427)
                     /gene="sepF"
                     /locus_tag="VFX26_03470"
     CDS             complement(155..427)
                     /gene="sepF"
                     /locus_tag="VFX26_03470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0090529 - cell septum assembly [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein SepF"
                     /protein_id="HEX5573565.1"
                     /translation="MQNQPIYLKAITLKDISDVDSIKNDAKKHMILIVRITPMAQKDI
                     ETLRKAIDDLYNFVKSAGGDIARLGEERVVITPPAVKIWKGVHDLK"
     gene            complement(790..1113)
                     /locus_tag="VFX26_03475"
     CDS             complement(790..1113)
                     /locus_tag="VFX26_03475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573566.1"
                     /translation="MRFKRDTDLKHWKDDPVKKITILKKYTVDGRDVISFEIRQYTHH
                     CSYQKYHTISTIYLETNDSKIETKYNQGIQMSDNNIESIAHCITNLNGVYSTINRLLL
                     ELDSS"
     gene            complement(1110..2495)
                     /locus_tag="VFX26_03480"
     CDS             complement(1110..2495)
                     /locus_tag="VFX26_03480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573567.1"
                     /translation="MAGIFAITNYTTDKETLMSYFINSLQMLQHRGKAYWKIIIDNSV
                     SSGIGPFPSDGSILKIADNNSNLQYLVGLGYLSKRTPRFKSMNKINVILDGFFVDIEK
                     LHLHPLVGDAASADSLYKIYSIFKKLLVDKENPEKACEFLDRHLRGNLTMMYDGKIYS
                     YRDSTGFKPLVNGTDRNNSISIIASENSLRIPFPNMNFQDVKPGQLIKMDTESGQQKL
                     LSLPTTRTMIDPFEFIRESHVTATIDGKGIYEVRKKIGKVQADFLSEHSDIDIEAAYA
                     EPDYPRPMTLGFSAEYRNHIPKFDLGEAIINDRYDDSDRMIDFSENISKNKMITSGKS
                     LKYILRHKISHKKIGLIQGTIQTGITAKETIYYLRKVGVKSVSVIVSYVPTVDGRQVG
                     LYTHNRELIAHKYIGQVPSLEELNTRISRELGADRVFYNSPSILSKGIGISEYNLWFP
                     EWVRFLEYDKK"
     gene            2608..3807
                     /locus_tag="VFX26_03485"
     CDS             2608..3807
                     /locus_tag="VFX26_03485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HEX5573568.1"
                     /translation="MLIGLIGKANVGKSTFFSASTDNIVNIANYPFTTVKPNLGICYV
                     RIKCVCTEFGVKDNPVHSICIDGIRFVPIQIIDVAGLVPGAHEGRGLGNKFLDDARQA
                     DALIHVVDISGSTDSEGRPLTPGAGDPLEDIRFVEKEFDLWLVSIIKREGNNMKELDS
                     SGLNTTQVLKKRLSGLGVTEPVIDKVLNKLNLNNKKIKSWNEQEIFDFCQNVRRIVKP
                     VVIAANKADVSTSKNNLENIIEKYTHVIACTSELEILLRKAVKNGFVHYLPGDNSFEI
                     KENAQLSDKQRQALEIVSNFIKKYGSTGVQEIINIACFELLKKIVVYPVEDESKLSDK
                     KGNILPEAYLLNEETTAKDLAHAVHEELGKGFLFAIDVRSKRRLGADHKLKNNDVIKI
                     VSATSRK"
     gene            3813..4823
                     /gene="kae1"
                     /locus_tag="VFX26_03490"
     CDS             3813..4823
                     /gene="kae1"
                     /locus_tag="VFX26_03490"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0061711 - N(6)-L-threonylcarbamoyladenine
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="KEOPS complex N(6)-L-threonylcarbamoyladenine
                     synthase Kae1"
                     /protein_id="HEX5573569.1"
                     /translation="MLCLGIESTAHTFACSVIRYSDSKKYPNILSDVRDTFKAPEGSG
                     IHPREAARHHASVAIDVLKKSLELSKIKYKDLDLVAYSAGPGLGPCLRIGAVIARSIS
                     SFYNVKLIPINHALGHIELGMSLTDSKDSLVLLVSGGHTMTLVFNNRRWRVIGETLDI
                     TLGQLLDQFGRHIGLASPCGSEIERMAHKSSKNYISLPYSIKGNDVTFSGLLSAAKRL
                     NSTRKYTNEDMCYSIQQTAFAMITEAVERALSATEKKELLLVGGVSANKELSSMLNLA
                     CQRHRVMFNSCPITFAGDNGAQIAWTGILSYLKSKNFIDISNSIINQSWRVDSVDVLW
                     RN"
     gene            4938..>5256
                     /locus_tag="VFX26_03495"
     CDS             4938..>5256
                     /locus_tag="VFX26_03495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573570.1"
                     /translation="MWNKHYFRESVFLFTALIVLTGAIAAATFCLTSSEAYPTKGKNH
                     KDMAFGTISSIQNNEQGEPSWILSGHWLTNIINKTMDSFNQTNTAKFDSRIYMVMLDG
                     TAMH"
BASE COUNT         1718 a          878 c          934 g         1726 t
ORIGIN      
        1 cggttgaaac caaaattaaa gaaggtaata actaatcatg gagaagggaa aaaatgtcaa
       61 aacttgtcaa attccatcaa caagatattt aagatccaga gttttcatcc actggttcaa
      121 gaatcaatca aggtattgtg aaatactaga gaacttactt taggtcatgt actcctttcc
      181 atatcttcac agctggcggt gtaatcacta ctcgttcctc acccaatctc gcaatatctc
      241 ctcctgccga tttgacaaaa ttatataaat cgtctatggc ctttcgtaat gtttcaatat
      301 ccttctgggc cataggtgtt attcgcacta tcaaaatcat gtgctttttt gcatcatttt
      361 taatggaatc aacatcacta atgtctttga gagtaatggc cttaaggtat atgggttgat
      421 tttgcaaagt agcacatcct cttttattgc tagcttgaga ggtaaaaagt caaatagtta
      481 ttctggtcaa atttttttta caccttactt caatttgtat gcttaaggat ccaaacaaat
      541 tcaaagtaat tccaaaataa ttattcaaat tattgatttt ctatgatatg tttctaaata
      601 tttcagtttt ttacttaaat aataaagata atacttgcac tatggggaag ttacaaaata
      661 aatatctaac ttgattttag tttgatttga gtcatctttt ttagataatc ttcattatga
      721 gccgagcatt aacccgtgat tcttatagaa gcgagtcttt gggaatgcta gttcaatcga
      781 gccatgacat taggagctgt ccaattctaa taataatcga tttattgttg aatagacccc
      841 gttcaaatta gtaatacagt gagctatgct ctcaatatta ttatcactca tttgaatccc
      901 ttggttgtac tttgtttcaa tcttactatc attggtttct aaataaatag tagaaattgt
      961 atgatatttt tggtaggaac aatgatgggt atattgtctt atttcaaagc taattacatc
     1021 tctcccatca actgtatact ttttcaatat tgttattttc ttaactggat catctttcca
     1081 atgctttaga tcagtatcgc gcttaaatct catttcttgt catactctaa aaatcgtacc
     1141 cattcaggaa accataaatt atattccgaa atcccgatac ctttggagag aatagaagga
     1201 gaattataaa atactctatc agcacctaac tctctagaaa tcctagtatt tagttcctca
     1261 agagagggta cttgtccaat atatttatga gcaatcaatt ctctattgtg ggtataaagg
     1321 ccaacttggc gtccgtctac tgtaggaaca tagctaacaa taacagagac cgatttaaca
     1381 cctacttttc tcagataata aatggtttct tttgctgtaa tgccggtttg aattgttccc
     1441 tgaattagac caatcttttt atggctaatt ttatgtctaa gaatgtattt taaagatttt
     1501 ccggaagtta tcattttatt cttacttata ttttcagaga aatctatcat acgatcagaa
     1561 tcatcatatc tatcattaat tatagcctca cccaagtcaa attttggtat gtgattccgg
     1621 tattctgcac taaaaccaag tgtcatgggt ctgggataat caggttctgc ataggccgct
     1681 tcaatatcaa tgtcagaatg ttctgaaaga aaatcggcct gcactttccc aatttttttt
     1741 ctaacctcat agattccttt tccgtcgatg gttgcagtaa catgagattc tcttataaat
     1801 tcgaatggat ctatcattgt ccttgttgta ggaagcgata ataacttttg ttgaccgctt
     1861 tcagtatcca ttttgattaa ctgtcctggt tttacgtctt gaaaattcat gttgggaaaa
     1921 ggaatacgca gtgaattttc tgaagctata atagaaattg agttgtttct atcagtgccg
     1981 tttacaagtg gcttgaaacc agtagaatct cgatatgaat agatttttcc atcatacatc
     2041 atagtaagat ttcctcttaa atgtctgtcc aaaaactcac aggctttttc tggattttct
     2101 ttatctacca gtaatttttt gaagatgcta taaatcttgt acagtgaatc agcacttgct
     2161 gcgtccccta caagcggatg tagatgcaat ttttcaatgt ctacgaagaa accatcaaga
     2221 attacattaa ttttattcat actcttaaat ctaggagttc ttttggataa ataacctaat
     2281 cctaccaaat attgaaggtt actattatta tctgcgatct ttagaattga tccgtcagaa
     2341 gggaatggac caataccact agatactgaa ttatcaataa ttatcttcca atatgccttc
     2401 cctctatgtt gtagcatctg taacgaatta atgaaatatg acattagggt ttctttatcc
     2461 gtcgtataat ttgtaattgc aaaaataccg gccaaggata aatattatgg tagtgaaaga
     2521 aattaaattt tgtgattaag gatactgttt atcaatcaga gtccaaatct caaaacatta
     2581 atttatgaat cttaataatc attatgagtg ctcatcggat taataggtaa ggcaaatgta
     2641 ggcaaatcta cttttttttc tgcttcaaca gataatattg tgaatattgc taattatccg
     2701 tttacaactg tgaaacctaa tcttggaatt tgctatgtga gaataaaatg cgtgtgcaca
     2761 gagtttgggg ttaaggataa tccagttcat tctatttgca tagatggcat aagatttgta
     2821 ccaatccaaa ttatcgatgt cgcgggtcta gttcctggcg ctcatgaagg aagaggtctt
     2881 ggtaataagt tcttagatga tgcaaggcaa gccgatgctc tcatacatgt cgtagacatc
     2941 tcgggttcca ctgattccga aggaaggcca ttgacacctg gtgctggcga tccacttgaa
     3001 gacataagat ttgttgaaaa ggaatttgat ttatggcttg tttcaattat taagagagaa
     3061 ggaaacaata tgaaagagct tgattcttca ggtctaaata caactcaagt attgaagaag
     3121 agattgtctg gacttggagt gacagagccc gttatagata aagtcttgaa caaattgaat
     3181 ctaaataata agaaaattaa atcttggaac gaacaggaaa tatttgactt ttgtcaaaat
     3241 gtaaggagaa tcgtaaaacc tgtagtaatt gcagcaaata aggcggatgt ttcaacatcc
     3301 aaaaataatc tagaaaatat tatagaaaag tacactcatg taatagcctg tacttctgaa
     3361 ttagagatat tattaagaaa agctgtaaag aacggattcg ttcactatct tccaggagac
     3421 aattcatttg aaattaaaga gaatgcacaa ttaagcgata aacagagaca agcgcttgaa
     3481 attgtttcaa attttattaa aaagtatggt tcaacaggtg ttcaggaaat aataaatata
     3541 gcctgttttg agttgctgaa gaaaattgta gtctatccag ttgaagatga atcaaagtta
     3601 agcgataaaa aaggcaatat tcttccagag gcttatttac taaatgaaga aacaactgca
     3661 aaggatttgg cccatgctgt acatgaggag ttgggaaaag gtttcctttt tgccattgac
     3721 gttagaagca aaagaaggtt gggagctgat cataaattaa aaaataatga cgtaattaaa
     3781 attgtctctg caacaagcag gaagtgatac taatgttatg tcttggaata gagagtacag
     3841 ctcacacttt tgcttgttca gtaataaggt actctgattc taaaaaatac ccaaatattc
     3901 tttctgacgt tagggatact ttcaaagctc ctgagggatc aggaatccat cccagggagg
     3961 cagctcgtca tcacgcatca gtagcaatag atgttttgaa aaaatctttg gaattatcca
     4021 agattaaata taaagatcta gacctggtag cttattctgc tggtcctggt cttggtcctt
     4081 gtttaaggat tggtgccgtc attgctcgtt caatatcttc gttttataat gtaaaattga
     4141 tccccataaa tcacgcgtta ggacatattg aacttggaat gagtctaact gatagtaagg
     4201 attctttagt ccttttagtc tctggaggac atactatgac attagtattt aataacagaa
     4261 gatggcgggt tataggagaa acattagata ttacattagg acaacttctg gatcaatttg
     4321 gcagacacat aggattagct tcaccatgtg gatcagaaat agaaagaatg gctcataaat
     4381 catccaaaaa ttatatctcg ttaccatatt caataaaggg aaatgatgtt acattttctg
     4441 ggttactatc tgctgctaag aggttgaatt caacacgcaa atatacaaat gaagacatgt
     4501 gttattcaat tcaacagact gcatttgcaa tgataacaga agcagttgag agagctctat
     4561 ctgctactga aaaaaaggaa ctactactag ttggcggtgt atctgctaac aaagaactat
     4621 ccagtatgct caatctggca tgccaaagac acagagtaat gttcaattca tgtccaatta
     4681 catttgcagg agataatgga gcacaaattg catggaccgg aatattgtct tatctaaaat
     4741 cgaaaaattt tatagacata tctaattcca ttattaacca gtcatggaga gttgatagtg
     4801 tagatgtttt gtggagaaac taaataagca tgccatcgac acatttcgat taacggcaca
     4861 agttttatca atttatgtat atttggaatg attttgttcc ggtagctttt aatattttcc
     4921 gggttcatct attccatatg tggaataaac actactttcg ggaatctgta tttctattta
     4981 cagcacttat agttctaaca ggagcaatag cagccgccac attctgtcta acttctagtg
     5041 aggcatatcc gaccaaagga aagaatcaca aagatatggc atttggtact atttcaagca
     5101 ttcaaaataa cgaacaaggc gaaccttcat ggattctttc tgggcattgg ctcacaaata
     5161 tcataaataa aaccatggac agtttcaatc agacaaatac tgcaaagttt gattcacgga
     5221 tctacatggt catgctggat ggaactgcga tgcata
//
LOCUS       DASUMD010000126         9023 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1249096, whole genome shotgun sequence.
ACCESSION   DASUMD010000126 DASUMD010000000
VERSION     DASUMD010000126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 9023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9023)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9023
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1249096"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            277..924
                     /locus_tag="VFX26_03500"
     CDS             277..924
                     /locus_tag="VFX26_03500"
                     /inference="COORDINATES: protein motif:HMM:NF013212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000774 - adenyl-nucleotide exchange
                     factor activity [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_function: GO:0051087 - protein-folding chaperone
                     binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HEX5573571.1"
                     /translation="MPEKTKDSEDGDNPEVTENEVMNKEPESNTGGDGDNPEVTENEV
                     LKREIEFLNGELEKEKDLSEKNLSKLRYLMADFDNYRKQMQKQLESEIEENRGQLFMK
                     ILKIYDDCMLALETLKNGQYDSTVVGGIRGIMTNFESFMKDEGLVEIETMDTPFDPNV
                     HDAIGFVTNELAPDNTIVEVVRKGYLLNNKVLRPSSVILSKRIVTNKDINERDKE"
     gene            938..2851
                     /gene="dnaK"
                     /locus_tag="VFX26_03505"
     CDS             938..2851
                     /gene="dnaK"
                     /locus_tag="VFX26_03505"
                     /inference="COORDINATES: protein motif:HMM:NF001413.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HEX5573572.1"
                     /translation="MGKIIGIDLGTSNSAASVMIGGKPTIIQAAEGTSVGGKAFPSYV
                     AFTKDGQLLVGEPARRQMVTNPEGTVLAAKRKMGIDFKFKVYDKEYTPQQISSFILQK
                     IKRDSEAYIGETVDKAVITVPAYFNDNQRQATKDAGEIAGLEVVRIINEPTAASLAYG
                     LDKVNKDLKIMVFDLGGGTLDVTIMEMGGGVFQVKSTSGDTQLGGTDMDNSVVEYIVQ
                     EFKNQSSIDIRNDKAAMMRIKEAAEKAKIELSNVMSTEVNLPFLSYDPSSGPKNLVLT
                     LPRSKLEELLRPIIERCKAPMLQAIEDAKLKPADIEKIILIGGPTRMPIVRQFITNVM
                     GKEPERGIDPMEAVAMGAAIQGAIIAGDVTTDILLVDVTPLTLGVEVLGGLKEPLIER
                     NTTIPTKKSKVFTTAADYQNAVTVHVVQGERSMAADCVSLGMFNLSGIPPAPRGIPQV
                     EVTFDIDANGILNVTAKDLATSKESKITISANTKLSKDDIERLKKESEQFAEQDKKKR
                     DEAEVKNEADNLIYTAEKLTQQDLKDKIKPEQVEKVNNSVKELKEAVTSNNIEEIKKK
                     IEGLKNIVGEISTEAYRAAGAAASQQATSSQNSESASQPADSASQPADSASQPADSAS
                     QPADSAKQSNTQA"
     gene            2912..4027
                     /gene="dnaJ"
                     /locus_tag="VFX26_03510"
     CDS             2912..4027
                     /gene="dnaJ"
                     /locus_tag="VFX26_03510"
                     /EC_number="1.8.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF008035.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HEX5573573.1"
                     /translation="MTTKRDYYEVLNVDRNATKEEIKNKYRKLALQFHPDRNKAAGAE
                     EKFKEISEAYAVLSDDEKRRKYDRYGHVGSEEVFRGSESNFDEIFRDIGFGGIRDIFE
                     QLFGGGSSARNRSDPFGFGFNFGRNNRGEDTVIDLSLTLEDVISGKNETIEVPSLETC
                     SVCNGSGCYPGTKRTKCTSCNGLGQTKRVFNENRFSTFVTVETCRTCRGIGEIIEKPC
                     KNCKATGKVTGRKKIQIEIPSGIDDGMTLQLSGRGISNGNEIPGDLFVRIHLKPHKIF
                     ERLENGDILYSLKLKYTELVLGTEIVLPTLYGNEKLKIPAGTQIDAIFRLRGKGIPVH
                     GQRSKGDQIIKIKLEVPTKLNERQKWLIKELDDTKNI"
     gene            4076..4660
                     /gene="hsp20"
                     /locus_tag="VFX26_03515"
     CDS             4076..4660
                     /gene="hsp20"
                     /locus_tag="VFX26_03515"
                     /inference="COORDINATES: protein motif:HMM:NF041800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaeal heat shock protein Hsp20"
                     /protein_id="HEX5573574.1"
                     /translation="MSTPFDEWFGRRRTNSWFPDVDSMMKEMEKLMQEAVKNMDQNVP
                     KNLIRERKLDDGSVVREMGPIVYGYSFKIGEDGKPVVRKFGNLNTFPSSLSGRFSVSD
                     QREPVVDIIKDVDKLKIIAEVPGVSKSDLRITANENSLTIESISGERRYNKKIELPDQ
                     IQPSSGKSTYKNGILDVTFKLKDSKEHGVSINVE"
     gene            4768..5703
                     /locus_tag="VFX26_03520"
     CDS             4768..5703
                     /locus_tag="VFX26_03520"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX5573575.1"
                     /translation="MRAIEAVDVTKKYKGSLSFAINNISLNIEPGRIFTLLGRNGAGK
                     TTFVRICATQLLPTSGTIKVFENDLIKDTEKIRNYISIVPQEGRPLRALTPWDHVYYW
                     LRIRGVNKYESFTRTKRILQEFELYDVRNKLAMYLSGGMKQKILVAMAMAADSRLLFL
                     DEPTIGLDPVSRRQIWKAIKEKKENGTTILLTTHYMDEAEVLSDDIVIIDKGIVISQG
                     TIADIRKNIKENIKIEISKSGVDGDVLKSYGTVIDGGTETLKLFTFESNIQELSTIAI
                     KKNLFFKVSPITLDDVFVSLVGSEPNNSDGDLSQD"
     gene            complement(5700..6962)
                     /locus_tag="VFX26_03525"
     CDS             complement(5700..6962)
                     /locus_tag="VFX26_03525"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase family glycosylhydrolase"
                     /protein_id="HEX5573576.1"
                     /translation="MSSLRQTNSILFGLTLVLIMMMTNGVNVGFSQSSALDDPLVGVA
                     MKGMYVDQKQNRNDTAQPPANYFDESFKLIKDAGLNHARVLFYWEAYEKNPQAFMDEL
                     EQVANAADKNGIKVIYDNHQWHTSSWLEDRGTGFPSALFNNNSQQYPMNSGGKEGQPV
                     AKLWWTNFWDGTIKDGQGNDAWTLLADFYKKVVAAVDDHASTLGYEILSEPHVESSDQ
                     WEKIGSFNSFMTDELRSVTDKTIVYSMNVPVDLDGPIQLTPENLAEMAPTNKENVMFK
                     ISVYGIPDRDQYQKERFDLFLKTRELTGIPLYIGEWNNVVRTQVNGVFQLDPQKSGLD
                     QQTTDAMLQSFENENITASAFWKWDYQDADTASFNLILNQNGTITPTEYYTYLKNSAA
                     KVYGDSVSTSTSNDTSASDSGSNSTDEN"
     gene            7229..7699
                     /locus_tag="VFX26_03530"
     CDS             7229..7699
                     /locus_tag="VFX26_03530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573577.1"
                     /translation="MQVPDPLHSTSTVFEGKIANDSNSILSLKDVQKGKNISISVTPQ
                     NSLDLLNVRILNPKGTLLLDVNSSQPLFTTIIPTISGNYTAVLTNLKNEEIYTESMFG
                     SSILFDSNRNPKIEIQAIFLGVIIFLIGIGICILWIFLEFFERLRLRTRYKQAS"
     gene            complement(7892..>9023)
                     /locus_tag="VFX26_03535"
     CDS             complement(7892..>9023)
                     /locus_tag="VFX26_03535"
                     /inference="COORDINATES: protein motif:HMM:NF014674.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Glu-tRNA(Gln) amidotransferase GatDE subunit E"
                     /protein_id="HEX5573578.1"
                     /translation="IAKELKSRKIDESKFLDNITDVSDLMKQSSSKVVKKILGGDSRF
                     MGFVLRGFRGILSFEPYQGIRLGRELSEVAKSYGIGGVFHSDELPNYGISSKDVESLS
                     SILNINESDAFILIGGPSVLLNTVVLELSNRIKKAFSGVVPETRSVRLDGVTIFSRPR
                     PGSSRMYPETDIPYISIDENKLKELSKNIPQPWNVVIDQIHKKYGINKTLAENIFDSQ
                     YFSLFENIVSHTSINPTFIVSKLTEDLISLEREGYDSSILSHDELFHLFVELDKSRIS
                     KESIPIILEKLLKKEGGAVDQIISSFEYEGVTEEYVDKMINKIIEENEAVISQKGLDS
                     IGLLMGRCMSILRGKIDGEKVNKKLVIKLTAHIQESKGSNTK"
BASE COUNT         3078 a         1486 c         1770 g         2689 t
ORIGIN      
        1 gcccaaaaat caactagcaa gagcgtgaat ttgttaatgg tctgaaaaaa actagagtca
       61 tcaagattta atggatcctt aatattcttc aagagttcct tttcattcat tatctgttgt
      121 aactttttca ttcttttttc gttaataatc tttaattctt catcttccaa tttatgttat
      181 gttatcaaga gaccatgatt tggtttatta tgttttttga tttgttaatt ttcgccgata
      241 cctaattatc tgagatgggt caaaacattt ccgaagttgc ccgaaaaaac gaaagatagt
      301 gaggatggag ataatcctga ggttacagag aatgaggtta tgaataagga gcccgagagc
      361 aataccggtg gtgatggaga taatcctgag gttacagaga atgaggtatt gaagagagaa
      421 atagaattcc taaatggtga acttgaaaag gaaaaagacc tttccgaaaa aaacctgtca
      481 aaacttagat atctcatggc agattttgac aattatagga aacaaatgca aaaacagtta
      541 gaatcagaaa ttgaagaaaa taggggtcaa ctcttcatga aaatcctgaa gatttatgat
      601 gactgtatgt tagcacttga aactttaaaa aatggtcagt acgattcaac tgtggttggt
      661 ggaatacggg gaatcatgac caattttgag agttttatga aggatgaagg attggtagaa
      721 atagaaacta tggatacacc ctttgatcca aacgttcatg acgctatcgg atttgtaact
      781 aatgaactgg ctccagataa cacaatagtg gaagtagtaa ggaaggggta tttgctaaac
      841 aataaagttt taagaccttc ttcagtcatt ttatctaaaa gaatagttac aaataaagat
      901 atcaatgaaa gagataagga gtagtgaata gaagattatg ggtaaaatta ttgggataga
      961 tcttggaaca agtaattctg cagcctccgt tatgattggg ggaaagccta cgataatcca
     1021 ggctgccgag ggaacttccg ttggtggaaa agcttttcca tcttatgtag ccttcacaaa
     1081 ggatggccaa ctgctggttg gcgaacctgc aagaaggcag atggtaacaa atcctgaggg
     1141 taccgtctta gctgcaaaac gcaagatggg gattgatttt aagtttaaag tgtatgataa
     1201 ggagtataca cctcagcaga tatcatcttt tattttgcaa aaaataaaaa gagattctga
     1261 agcctatata ggtgaaactg tagataaggc agtaataacg gttccagcat attttaatga
     1321 taatcaacga caagcaacca aagacgctgg agaaattgct gggctagaag ttgtaagaat
     1381 tattaatgaa cctactgctg cttctctcgc ctatggactg gataaagtaa acaaagactt
     1441 gaagataatg gtctttgatc tgggtggagg aaccctggac gttaccataa tggaaatggg
     1501 aggtggagta tttcaggtaa agagtacatc tggagacact caactgggtg gaactgatat
     1561 ggataattct gttgtagaat atatagttca agaatttaag aatcaaagtt cgattgatat
     1621 tcgtaatgac aaggctgcaa tgatgagaat taaagaagca gccgaaaagg caaaaattga
     1681 attgtctaat gtaatgagta ctgaagtaaa cttaccattt ttgtcttatg atccatcgtc
     1741 tggtcctaaa aatttagtct tgactcttcc cagatcaaaa ttggaagaat tgctgagacc
     1801 aataattgaa agatgtaaag cacccatgtt gcaagcaatt gaggatgcca agctcaaacc
     1861 cgctgacatc gagaagataa ttttgatcgg tgggcccacg cgtatgccga ttgtacgaca
     1921 attcataaca aatgtaatgg gcaaagagcc cgaaagaggc attgatccaa tggaagcagt
     1981 agctatggga gcagccattc aaggtgcaat cattgcggga gacgtgacaa cagacattct
     2041 tttagttgac gtgactccgc taaccttagg tgttgaagtg cttggaggat taaaagaacc
     2101 tcttattgaa agaaatacga ctatcccgac aaagaaaagc aaagtcttta ccactgctgc
     2161 agactaccaa aatgcagtaa ctgtacatgt agttcaaggt gaaagatcga tggcagctga
     2221 ttgtgtttcc ctaggcatgt ttaacttatc aggaataccg ccggcgccca gaggaatacc
     2281 acaagtggaa gttacttttg atattgacgc aaacggcatc ctgaatgtta ctgcaaaaga
     2341 cctagctact tctaaggaat ccaaaataac aatttccgca aataccaaat tatctaaaga
     2401 tgatattgaa agactaaaga aggaatcaga acaatttgca gagcaggata aaaagaagag
     2461 ggatgaagca gaagtaaaaa atgaagcaga taatctgatt tatactgcag agaaactgac
     2521 ccagcaggat ttaaaggaca aaataaaacc tgagcaagta gaaaaagtaa ataattctgt
     2581 caaggaattg aaagaagctg ttacatcaaa taatattgaa gagataaaga aaaagattga
     2641 gggtctaaaa aatatcgtag gtgaaataag taccgaagcg tatagagcgg ctggagcagc
     2701 ggcgtctcaa caagccacct catctcaaaa ttcggaaagt gcaagtcaac cagccgatag
     2761 tgcaagtcaa ccagccgata gtgcaagtca accagccgat agtgcaagtc aaccagccga
     2821 tagtgcaaag cagtctaaca ctcaggcata acatgagatt gaaagacaaa cctgaattca
     2881 ttttgtcata tttaaccaat ggtttctttc catgactaca aagcgcgact attatgaagt
     2941 tttgaatgta gatagaaatg ctactaaaga agagatcaaa aacaagtata ggaaattagc
     3001 tcttcaattt catcccgaca gaaacaaagc tgcaggtgca gaagaaaaat tcaaagaaat
     3061 ttcagaagca tatgctgttt tatctgatga tgaaaaaaga agaaaatatg atagatacgg
     3121 gcatgtagga tctgaggaag tcttcagagg atcagaatca aactttgatg aaatcttcag
     3181 ggatattggt tttggtggaa ttagagatat ttttgaacaa ttatttggag gaggatcttc
     3241 agctagaaat agaagtgacc catttgggtt tgggtttaat ttcggaagga acaatagggg
     3301 agaggatact gtaatagatt tgtctcttac attagaagat gtcataagcg gaaagaatga
     3361 aaccattgaa gttccatcat tagaaacgtg ttctgtgtgc aatggtagtg gatgttatcc
     3421 tggtacgaaa cgcacgaaat gtacatcgtg taatggacta ggacaaacaa agagagtctt
     3481 taacgaaaat agattttcga ctttcgttac tgtggaaacg tgtagaactt gcagaggaat
     3541 cggggagatt attgaaaaac catgtaaaaa ttgcaaggca acaggtaaag ttacgggtag
     3601 aaaaaaaata caaatcgaaa taccatcggg cattgatgat ggtatgacac ttcagttaag
     3661 cggaagagga atttcgaacg gaaatgaaat tccaggagat ctatttgttc gaattcacct
     3721 aaagcctcat aaaatttttg aaagacttga aaacggagat atactttatt ctctgaagct
     3781 caaatatacg gagttagtat tgggtactga gatagtatta ccgacattgt atgggaatga
     3841 aaagttgaaa atacctgcag gaactcaaat cgatgcaatt tttagattga gaggaaaagg
     3901 aatacccgtg catggacaac gttccaaggg agatcaaatt ataaaaataa aacttgaggt
     3961 acctacaaaa cttaatgaac gacaaaaatg gctgatcaaa gaattggatg atacaaaaaa
     4021 tatctagatt gtagagtctg taatatttat atctaaataa atcaaaataa tatatatgtc
     4081 gactccgttt gacgagtggt ttggaagaag gagaacaaat tcatggtttc ccgatgtaga
     4141 ttcgatgatg aaagaaatgg aaaagttaat gcaagaagcg gtcaaaaata tggatcaaaa
     4201 tgttccaaaa aatctcataa gagaacgcaa gcttgatgac ggttctgttg ttcgtgaaat
     4261 gggtcctatt gtttatggct attcattcaa aattggggag gatggaaagc cagtcgtcag
     4321 aaaatttgga aatctaaata cttttccaag ctccttatca ggtaggtttt cagttagtga
     4381 tcagagggaa cctgtagtag atattataaa agatgttgac aaattgaaaa taattgcaga
     4441 ggtgcctggc gtaagtaaaa gtgatttaag aataactgcc aacgaaaatt ctttaaccat
     4501 tgagtcaatt tcaggagaaa gaagatataa taagaaaata gagcttccag atcaaattca
     4561 accatcttca gggaaatcaa cttataaaaa tgggattcta gatgtaacct tcaaattaaa
     4621 agactcaaag gaacatggag tttctatcaa tgtggaatag gttggattat ttgtattttc
     4681 ctacttttaa ttttcatatt acccattctt catgatttga ttttaacata acgttgtcat
     4741 gatcggtaat attaaaaatg tttctttatg agagccatag aggccgttga tgttactaaa
     4801 aaatataaag gatcgttatc ctttgctatt aataatatct cattgaatat tgagcctgga
     4861 agaatattca ctcttcttgg aagaaatggt gcaggaaaaa ctacgttcgt aagaatttgt
     4921 gcaacgcagt tattaccaac ttctggaact ataaaagtat ttgaaaatga tcttattaag
     4981 gatactgaaa aaataagaaa ttatatatct atagtgcctc aagaaggaag accactgcgt
     5041 gcacttacac cgtgggacca tgtctattac tggctaagga ttagaggagt gaataaatat
     5101 gaatcattca caagaaccaa aagaattctt caggaatttg aattatatga tgtaagaaat
     5161 aaacttgcta tgtacctgtc cggaggaatg aaacaaaaga tattggtagc gatggctatg
     5221 gctgcagatt caagactcct ttttctagat gaaccaacga ttggacttga ccccgtgtcc
     5281 agacgtcaaa tttggaaagc aatcaaggaa aaaaaagaaa atggaacaac aatactgctg
     5341 acgacacatt acatggatga agctgaggta ttgtctgatg acatagtcat aatagataag
     5401 ggtatcgtta tctcacaagg aactattgct gacattagaa agaatatcaa agaaaatatc
     5461 aagatagaaa tttcaaaatc tggggttgat ggtgatgtat taaaatctta cgggactgta
     5521 attgatggcg gaacagaaac cttaaaacta ttcacatttg aatcaaacat tcaggagtta
     5581 tcaacgattg caataaagaa aaatttattc tttaaagtat cgcctattac attggatgat
     5641 gtatttgtgt ctcttgtggg ctctgagcct aataactctg atggcgattt gtcccaggat
     5701 taattctcgt cagtggagtt agagccagag tcagaagcag aggtatcatt agaagtagag
     5761 gtagatacag agtcaccata aactttagct gccgagttct tgagatatgt gtaatattct
     5821 gttggcgtta tcgttccatt ttgatttaat attaaattga agctagcagt atctgcatct
     5881 tggtaatccc atttccagaa agctgaggcg gttatatttt cgttttcaaa tgattgaagc
     5941 atagcatctg tggtctgctg gtctagaccg ctcttttgag gatctaattg aaatactcca
     6001 ttaacttgag ttcttacgac attgttccat tcgccgatat agagtgggat accagtcaat
     6061 tcacgagttt tcaagaaaag gtcaaatctt tctttttggt attgatctct gtctggaatt
     6121 ccatagacac ttattttaaa cattacattt tctttatttg taggagccat ctcagcaaga
     6181 ttttctggtg ttaattgtat aggaccatca agatccacag ggacattcat actataaacg
     6241 atagttttgt ctgtcaccga acgtaattca tcggtcatga atgaattaaa acttccaatt
     6301 ttttcccatt gatcagaact ttctacatga ggttcactca gaatttcata tcctaaagta
     6361 ctggcatggt catccactgc agcaactacc tttttataaa agtcagctag caaggtccat
     6421 gcatcatttc cttggccatc cttgatagtt ccatcccaga aattagtcca ccataacttt
     6481 gcgactggtt gtccctcttt acctccactg ttcattggat attgctgtga attattgtta
     6541 aagagagctg atggaaaacc agttcctcta tcttctagcc atgaagaagt gtgccattga
     6601 tgattgtcat aaatgacctt aataccattc ttatctgctg catttgccac ttgctccaac
     6661 tcatccatga aagcctgggg attcttctca tatgcttccc aatagaataa gactctagca
     6721 tgatttaatc ctgcgtcttt tatcaacttg aaactttcat cgaaataatt ggcaggaggt
     6781 tgtgcggtat cattcctgtt ttgtttttga tccacgtaca tacccttcat agcaacgccg
     6841 accaatggat cgtccaaagc agatgactgg gaaaaaccaa catttacccc atttgtcatc
     6901 atcatgatca atacaagagt taaaccaaat aggatagaat ttgtttgtct taaactactc
     6961 atcacaggta tatcgaaatc tagtttatat atatattatg aattacggtc ccattatcga
     7021 atttatgaca tcaagctcgc ataaattgtt gagcgttagc ctcaaaatta ttatttggga
     7081 atatagttat atctttaaag tgcatatttg taactcttaa aggaaggtag atgccagcaa
     7141 tgataggtga tgactaatca ggcgaattat catagccgca ggattaatat gtttattcat
     7201 cggggtaacg ataatttctg ttacgtccat gcaagtacca gatcctcttc attccacaag
     7261 tacagtattt gagggaaaaa tagcaaatga tagcaattct attttgtcac tgaaggatgt
     7321 acaaaaagga aaaaacatat ctatttctgt aacgcctcaa aattctttag acctacttaa
     7381 tgtaaggatc ttaaatccaa aagggacatt attacttgat gtcaactcat cgcaaccctt
     7441 gtttaccaca ataattccga caattagcgg aaattataca gcagttttga ccaatctcaa
     7501 aaatgaagaa atatacacag agagtatgtt tgggagttcg atcctttttg atagtaatag
     7561 aaatccaaaa attgaaattc aggcaatttt tctaggagtt attatcttcc taataggaat
     7621 tggcatatgt attctttgga tattcttaga attctttgaa agattaagat tgagaacaag
     7681 atacaaacag gcatcctgaa actagattag tgcagtttca agctacgttg aattcaaaca
     7741 atgaatcaaa ttataaattt cttactgata gagtttgaaa ttagtatatt tcctgctatc
     7801 tttataattg gaaatttcat ctaaatggag gttttagtta tgacgcagtc gctaaaaccc
     7861 atactcagat aaaaatactg tgattacaaa cttattttgt attacttcct ttagattctt
     7921 gtatgtgtgc agttaatttt attacgagtt tcttattgac tttctctccg tcaattttac
     7981 ctcttaagat tgacatacac ctgcccatca gaagaccaat tgaatccaaa cctttctgag
     8041 aaattaccgc ctcgttttct tcaattatct tgtttatcat cttatcaaca tactcttctg
     8101 taacgccttc atattcaaat gaactgatga tttgatcaac agcaccacct tcttttttta
     8161 acagcttttc aagtattatc ggaatagatt ctttggaaat tctagattta tccagctcca
     8221 caaacagatg aaatagctca tcatgactaa gaattgaact gtcatatccc tccctttcta
     8281 aactaatcaa atcttcggta agtttagaaa ctatgaaagt tgggttgatt gaggtgtgtg
     8341 aaactatatt ctcaaataga gagaagtatt gagaatcaaa aatattttct gctaatgtct
     8401 tgttgatacc gtatttcttg tggatttgat ctatgactac attccaaggc tgaggtatgt
     8461 ttttggataa ttcctttagc ttgttttcat ctatggaaat gtatgggata tctgtttctg
     8521 gatacattct cgatgagccg ggtcttggtc tactaaatat cgttactcca tctagtctta
     8581 cagatcgtgt ctcaggaaca acgcctgaga aagctttctt gattctattg gataattcaa
     8641 gcactacagt gtttagcaat actgatggcc caccaatcaa tataaaggcg tcactttcat
     8701 taatatttaa aatggaagat aatgattcca catctttgct acttattccg tagtttggta
     8761 attcatcgga gtgaaataca ccaccaattc cataggattt tgcaacttcg ctcaattctc
     8821 ttcccaatct aattccttga tacggttcaa aggacaatat tcctctaaaa ccccgcaaca
     8881 cgaaccccat aaatctagaa tcaccaccga ggatcttttt tactacttta gaggatgact
     8941 gtttcattaa atcactaaca tctgtgatat tatccaagaa ttttgattca tcgattttac
     9001 ggctctttag ttcttttgca att
//
LOCUS       DASUMD010000127         2598 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1360228, whole genome shotgun sequence.
ACCESSION   DASUMD010000127 DASUMD010000000
VERSION     DASUMD010000127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2598
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1360228"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(28..1275)
                     /locus_tag="VFX26_03540"
     CDS             complement(28..1275)
                     /locus_tag="VFX26_03540"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEX5573579.1"
                     /translation="MFSNRSNAEMSNSNIVSFSIIIPTYNESDNILRLIREIEKYLPT
                     SDFTEIIIVDDNSPDGTGKLVEEYINQQKSTTEKEGSPKTRNYRIKIVHRIGKNGLIP
                     AIMDGVKQSSGQNVIIMDADFSHPPEVIPKMMQELKMNPNSIIIGSRYIEGGKVVGWP
                     KKRKLLSTGASILARFGLNVRRVKDPMSGLFALPRELIENISIDTKGYKILLEILVKN
                     KEIPTKEIPYTFIDRQSGKSKMDRNVIMNYAEAIWQLYRHGPKSGQVTINEKVNKKSV
                     LFLSKVGRYYTVGISGLFINYIVSFLLANDVANSIRLLSNVWYLEASILGAAISSTSN
                     FFLNKYWTFEDKRFDVRSTARQYLSFIGMSAIGLIIQIALLYYMVENLVPYRISLIVA
                     IGIATTINFILNKKFTFKEKVWA"
     gene            complement(1405..1647)
                     /locus_tag="VFX26_03545"
     CDS             complement(1405..1647)
                     /locus_tag="VFX26_03545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573580.1"
                     /translation="MERKTYEWGMIRNVLTTISSDKQVDIFVVPESTAHSTLVCKFIV
                     TDDKDDSGTDDVTVEAEQIPQDESNSECELLWFSIL"
     gene            2134..2343
                     /locus_tag="VFX26_03550"
     CDS             2134..2343
                     /locus_tag="VFX26_03550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573581.1"
                     /translation="MNTYTILMGFLDKLKRGLAGGKEKAENAGKDVEHGAEKVGKDVE
                     HGAEKVGKDVEHGAEKAVDDKEEKT"
BASE COUNT          824 a          495 c          437 g          842 t
ORIGIN      
        1 tcttctaatt ctaactaaaa taaagactca agcccaaact ttttctttga atgtaaattt
       61 cttatttagt atgaaattaa tagtggtagc gataccaata gccacgatta atgagatacg
      121 atatggaaca agattttcta ccatataata tagaagagca atttggataa tcaaaccaat
      181 tgcactcatg ccaatgaacg aaagatactg tcttgcagta gaccgcacat caaaccgctt
      241 gtcctcaaat gtccaatact tgttcaaaaa gaagttcgaa gttgacgaga tagcagctcc
      301 aagaattgag gcctccagat accatacgtt tgataacaat ctaatagaat tggccacatc
      361 attagctaat agaaaagaaa caatataatt aataaaaagg ccggaaatgc caactgtata
      421 gtagcgacct actttagata ggaaaagcac tgatttcttg tttaccttct cgtttattgt
      481 tacctggcct gattttgggc cgtgtctata taattgccag attgcttcag cataattcat
      541 tattacattc cgatccattt tgctctttcc cgattgcctg tcaataaacg tatagggaat
      601 ttccttcgtg ggtatttctt tattttttac caaaatctct aatagaatct tgtaaccttt
      661 agtatcaatc gaaatatttt ctattagttc acgaggtagc gcaaataatc cagacatggg
      721 atcctttaca cgccttacat ttaacccaaa acgtgccaaa atagaagcgc ccgtactcag
      781 aagctttcgt ttcttgggcc atcctactac ctttccaccc tctatatacc tcgatccaat
      841 tattatggaa tttggattca tttttaattc ttgcatcatt tttggaatta cctcgggagg
      901 atgtgaaaaa tcagcatcca taattatcac attctgtcca gaagattgct tgactccatc
      961 cataattgca ggtatcaacc cattttttcc gattcgatga actattttta tcctgtaatt
     1021 tcttgtcttg ggcgaacctt ctttttcagt agtacttttc tgttgattta tgtattcttc
     1081 tacgagcttt cctgttccat caggagaatt atcatcgact ataataattt cagtaaaatc
     1141 agacgttggt aaatattttt caatttccct aatgagtctt aatatattat cagactcatt
     1201 gtaggtcgga ataataattg agaatgatac aatatttgaa tttgacatct ctgcattact
     1261 ccgatttgaa aacaaattcc aaaaatctat agaaatggcg ggtattaaga gttttttatc
     1321 tcctttacaa ctctagtacc gacttgcatg atattcgtaa atctacattt tggggtctta
     1381 tcccccatca agattttcaa ttaattacaa tattgagaac cataataatt cgcattcaga
     1441 atttgattca tcttgaggaa tttgctctgc ttctacagta acatcatcag tacccgaatc
     1501 atctttatcg tcagtaacta taaatttgca tacaagggtt gaatgtgcag ttgattctgg
     1561 aacaacaaag atatcaactt gcttatctga cgaaatagtt gttaagacat tgcgaatcat
     1621 cccccattcg taagttttcc tttccatcac tgtttggact tgctgtcggt gatttagtgg
     1681 caatgggaac cccatctatg taaagaccaa tagcaggacc ctcaaatgtt actactgcgt
     1741 aatgccagtt tctgacgcta tgcgcttgaa aacactccgc tcgcagtttc aaagccgccc
     1801 cataattttt ctgcatttgt catccatcta ccatatttca tatagtctga tgctccactt
     1861 tattcacaat aaaggcatca gggttgtgat ctgccgacct tttgaaccat gctacaacgc
     1921 taaatttaga tagttgagca gaatttgtgc agtttacatc aaaaaattta cactttcatt
     1981 tttagaaaaa gcagaatgag tatttaaaac aagcacagtt aaaaacacag tcaacgataa
     2041 cgttacaaac aattattctg aaagttaccc tcgctcaata tcactatatt agtgttcttt
     2101 atttacccgc cagatattca agatttaaat attttgaaca cttacactat tttaatgggt
     2161 tttcttgata aacttaaacg aggcttagcg ggcggaaaag aaaaggccga aaatgctgga
     2221 aaggatgtag agcacggcgc tgaaaaggtt ggaaaggatg tagagcacgg cgctgaaaag
     2281 gttggaaagg atgtagagca cggcgctgaa aaggctgtag atgacaagga agaaaagacc
     2341 taaagaactg ctgataaagc tgataacact gtagatgatt cagctaacgc tttggacgaa
     2401 ttaaagaagg attaactaaa taattacgat tcatttagta catgctaagt gggtgctatt
     2461 gagagatact ttgtaacctt aacctaaaat ttttgattat tttggtacta tgatactttc
     2521 tagcttatca tttgtactgt tgagaacgta ctgaaatctt gcgatattac gacaaagatc
     2581 tgattatact tctaatgc
//
LOCUS       DASUMD010000128         3655 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1029174, whole genome shotgun sequence.
ACCESSION   DASUMD010000128 DASUMD010000000
VERSION     DASUMD010000128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3655)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3655)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3655
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1029174"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..303)
                     /locus_tag="VFX26_03555"
     CDS             complement(<1..303)
                     /locus_tag="VFX26_03555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573582.1"
                     /translation="MQSIFADLLTNSLQQRIGDYDVSVNAVPKDPISGQETRINIMIT
                     TVSNNPITDTPITIRISDERDELVRTQPILLSSGHFSYYYIFNKSGIFLLSIDILDN"
     gene            complement(458..1597)
                     /locus_tag="VFX26_03560"
     CDS             complement(458..1597)
                     /locus_tag="VFX26_03560"
                     /inference="COORDINATES: protein motif:HMM:NF028479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-bladed beta-propeller"
                     /protein_id="HEX5573583.1"
                     /translation="MKILELEDLNVNLKMFAVLLSLALVLSTVSIWTSQSIYSQTSED
                     AKSLNCKDNNDQSQYVSNVSLENDSDGVGPVTDDLPGFHYVKKFDSNGTLISAWGTKG
                     TGPGQFLHAHGITVDSKDNVYVSDAEKCNIQKFDSEGNFISMWGSKGNGPGKFLQPES
                     MAVDSNGNIFVADYANQQIQKFDSEGNFITMWGSKGRGDSQFIKPWGVAVDSNDNVYT
                     SDQDNPEVQKFSNDGKFLTKWNSYSPGMLFVHLHDITVDSNDSVYVTDGRNNSYVAKF
                     DDQGNLTTKWGGFGYGNGHFVENHGVVTDKEGNVYVVDTRNVRIQKFDSEGNFVTKWG
                     SLGCRDDQFFIPHDIAIDSSGNIYVSDSGNVHFRANKTCESYENQ"
     gene            1686..1850
                     /locus_tag="VFX26_03565"
     CDS             1686..1850
                     /locus_tag="VFX26_03565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573584.1"
                     /translation="MKFKNDAVEYIAELDFILSLASLRKIMALNYPKDSTRILLNYNE
                     TYSFQSFSRF"
     gene            complement(1891..2382)
                     /locus_tag="VFX26_03570"
     CDS             complement(1891..2382)
                     /locus_tag="VFX26_03570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573585.1"
                     /translation="MNTYNVSQYTSGHFFGTTKNVGDYQLIFAPYPPLPFAGDNSTLL
                     NFSILDKENQNVNNIFASLIIKNKVNGSIIQNIPFKFYEFSDITFPYTFKDIGDYQVS
                     LLVRINGDPTYSQRPISVDFDISATNPNQVIPTDELIAYYLVPALAVIAVIVIFLKRK
                     NKI"
     gene            complement(2601..3326)
                     /locus_tag="VFX26_03575"
     CDS             complement(2601..3326)
                     /locus_tag="VFX26_03575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573586.1"
                     /translation="MKGIIILVIGSFLLSVAVFTNYPETSFAHTSKTFGNTTIEAGWL
                     SEPPLASDLNSIVIQVSKGPSGEQTPVVNALANLTLSAKYGTITKQLDFQPSPTTDGG
                     YEAKILPTRVGPYNLILQGDVKGQKVDSEFEIEDVESKSIFSFPDSSIDSTNTNNINQ
                     QVQDGISRLSNDIQKSRDDLNMSRNEMADIQQSLVGLQKDSGILYLILLTTLGISIAG
                     IVMSAYLFTLLRFRKGMVGGPQE"
BASE COUNT         1173 a          684 c          565 g         1233 t
ORIGIN      
        1 attatctaga atgtcaatac ttaggagaaa tatgcctgat ttgttaaaaa tatagtaata
       61 cgagaagtgt ccacttgaca ataatatcgg ttgtgttctt actaattcat ccctttcatc
      121 tgatattcta atggtaatgg gtgtatctgt tatgggattg ttactaactg tagtaatcat
      181 aatattgatg cgggtttcct gtccagaaat tgggtctttg ggtacggcat taacgctgac
      241 atcatagtct ccaattcgct gttgtaagga attagttaac aaatctgcga atattgattg
      301 cacagtggat aatgcgctga tgacaattaa gatatatgga ataaataata caattcgttc
      361 caaattatta tttcattata aattccgttt tatttcgcac catgtataaa atttcgtatt
      421 gggatctatt gaccgcagat gttgaacttc tttattacta ttgattttca taagattcgc
      481 atgttttatt tgctctaaaa tgaacatttc cactatctga aacataaata tttccagaag
      541 agtctattgc aatatcgtgg ggaataaaga attgatcgtc tcgacatcca agtgatcccc
      601 actttgtaac aaaattacct tcactgtcga atttctgaat acgtacattc ctagtatcta
      661 caacatatac atttccttct ttatcggtca ccacgccatg attttcaaca aagtgaccgt
      721 tcccgtatcc aaatcctccc cattttgtgg taagattacc ttgatcatca aattttgcta
      781 cataagaatt gtttctacca tcagtaacat aaactgaatc attagaatct acagtaatat
      841 catgtaaatg tacaaataac attccaggag aatacgaatt ccatttagtc aaaaacttgc
      901 catcattgct aaatttttga acttcaggat tatcctgatc acttgtatac acattatcat
      961 ttgaatcaac agcaactccc caaggtttaa tgaattgact atctcctctt cccttactac
     1021 cccacatcgt aatgaaatta ccttcactat caaatttctg aatttgctgg ttagcgtaat
     1081 cagcaacaaa tatgttgcca tttgaatcta ccgccatgct ctcaggttgc aagaattttc
     1141 ctggaccatt tcctttactg ccccacatac taatgaaatt gccctcacta tcaaatttct
     1201 gaatgttaca tttttcagca tcacttacgt aaacattatc tttcgaatca accgtaattc
     1261 catgtgcatg taaaaactgt cctggccctg ttcctttagt accccaggca gaaatcagtg
     1321 tgccattact atcaaatttt ttaacgtaat gaaatcctgg gaggtcgtca gtaaccggcc
     1381 ctactccatc tgaatcattc tccaacgaaa cattactaac atattgggat tgatcgttgt
     1441 tgtccttaca attgagactc tttgcgtctt cagatgtttg agaataaatc gactgagaag
     1501 tccatataga tacggttgat aacactaaag ccagtgatag cagaaccgca aacatcttta
     1561 aattaacgtt caagtcttct aattctagaa ttttcatatt atgcttatca ccaagctgcg
     1621 gcctcaatag aggacatcag tatgaagtct tttgtcacca aatataaatt taaaactaga
     1681 gaaaaatgaa attcaagaat gacgcagtag aatatatcgc agaattagat ttcattctat
     1741 cactagcatc gcttaggaaa ataatggcac taaattatcc aaaggattca accaggatat
     1801 tgttaaatta caatgaaacg tattcatttc aaagtttttc aagattttag tatcttggtt
     1861 aatccacagt caagttattc aaggccgaga ttaaattttg tttttacgtt tcaagaatat
     1921 tacaattaca gctataacgg ctaatgctgg taccaagtag tatgctatta gttcatcagt
     1981 gggtattact tgatttggat ttgtagctga tatatcaaaa tctacggaaa tcggtctttg
     2041 agaatatgta ggatcgccat taattctgac taataacgaa acttggtaat ccccaatatc
     2101 tttaaaagta tacggaaaag taatatcact aaattcataa aacttaaatg gaatattttg
     2161 aataatggat ccatttacct tattttttat gataagtgat gcaaagatgt tatttacatt
     2221 ttgattctct ttatctagaa tactgaaatt tagtaaagtt gagttgtcac cagcgaaagg
     2281 aagcggtggg tatggtgcaa atattaattg gtaatcgcca acattcttag ttgttccaaa
     2341 gaaatgacct gacgtatact gtgagacatt atatgtattc atacacaaaa aaaggaacaa
     2401 tgttaaaaga aaaagatgtt taaaatagaa tactttttga accgacataa acataatgtg
     2461 tcaaattgat tgtacaacct tatttttaat tcattctatt tcaatctgcc agcaactttt
     2521 ctaacccatg attggaagta caataatatt aatcaattat agcttgcttg ccatatctac
     2581 aattgtccta attaggaaat ttattcctgg gggccgccta ccattccctt tctaaatcgg
     2641 agtaaagtaa acagatatgc tgacattaca attccggcaa tacttattcc aagagtagtc
     2701 aataatatca aatataaaat acctgaatcc ttttgcaatc ctacaagaga ttgttgaata
     2761 tcggccattt cattccgtga catattgaga tcatctctgc ttttttgaat gtcatttgac
     2821 aacctgctaa ttccgtcctg aacttgctga ttgatattat tagtattggt ggagtcaatc
     2881 gaactgtcag ggaaggaaaa aatggatttt gattctacat cttcgatctc aaattcgctg
     2941 tcaacttttt gtcccttcac atcaccttga agtatcaaat tatatggtcc tacccttgta
     3001 ggaagtatct tagcttcata tccaccatct gtcgttggag agggctgaaa atctaattgt
     3061 tttgtaatcg taccatattt ggcagataat gttagattag ctaacgcatt aacaacaggc
     3121 gtttgttcac cactaggtcc cttactaact tgtataacaa tactgttcaa atcagatgcg
     3181 agaggcggtt ctgacaacca cccagcctca atggttgtat tcccaaaagt cttactagta
     3241 tgtgcaaacg aagtttcggg ataatttgta aaaacggcaa cggatagcag aaaagaacca
     3301 atcacaagaa taataattcc tttcatttcc atattgacta aattaaatct tcatacatgt
     3361 tatatccttt atcctctatt ttcgattact gtactagaaa aaggggaata ataaaatatt
     3421 caaatcatca atattcccat ggagatatat tgatttttag tttccctttc tattcaattc
     3481 cttcatattt tcataaaaat ttgtctttaa tcttagtatt atgtatggtt agccttcttg
     3541 gcttcggagc tatccatacg tcttttggac atgcttttgt tatcgatagc agtccctcac
     3601 aatcagcatc catagcggca tctccacaac aaatagatgt tttctttagc gaacc
//
LOCUS       DASUMD010000129         2930 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_143698, whole genome shotgun sequence.
ACCESSION   DASUMD010000129 DASUMD010000000
VERSION     DASUMD010000129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2930)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2930)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2930
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_143698"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(292..591)
                     /locus_tag="VFX26_03580"
     CDS             complement(292..591)
                     /locus_tag="VFX26_03580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573587.1"
                     /translation="MTYPKGYSGGGGGGGRTGGSKDEIEHMIGRRVENMTPVFIIGFI
                     LCWVATAGGVYVGVTVYPWAYPLPSGLYALSVLTVIEALGFFWIMKISREKLGYA"
     gene            859..1371
                     /locus_tag="VFX26_03585"
     CDS             859..1371
                     /locus_tag="VFX26_03585"
                     /inference="COORDINATES: protein motif:HMM:NF016619.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methane monooxygenase/ammonia monooxygenase
                     subunit B"
                     /protein_id="HEX5573588.1"
                     /translation="MSTSTIIAIAQTAEGHGVQAQLQSRFVRIQDEAFSAQTLNTGDQ
                     LIVTGNLQSLVNKPLRAWLSLFSESTNAGNRWEFIARDPPGNIFDIPPQGTIPYSITA
                     KALEPGVYHVHTQLNVEHVGPGLGPGQTIQVSGEAILKPVPWGNVTYQVILIGAGLGI
                     TFATRPWQVI"
     gene            complement(1459..2373)
                     /locus_tag="VFX26_03590"
     CDS             complement(1459..2373)
                     /locus_tag="VFX26_03590"
                     /inference="COORDINATES: protein motif:HMM:NF001658.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription initiation factor IIB"
                     /protein_id="HEX5573589.1"
                     /translation="MVKDISLFSDRCPRCGKGPMVTDNSSGEMFCGNCGFVVTERIEE
                     TGPEWRAFSKEEHEDRSRAGIPTSLAMHDMGLATIIGPVDKDASGKPLSASMKSTIER
                     LRTWDSRSQVHEPVDRNFRQAFSELDRLKDKLAVGDAVIEKAAYVYRKALEKGLVRGR
                     SISALVAAALYAACRDTETPRTLKDIAHASNIKKKDVARCYRLLIRELDLKMPVVDPV
                     KCVARIASKSGLSEKTKRKALEILKKAEQGKISAGKDPMGLAAAALYVACVMNGENKT
                     QKDVAEAAGVTEVTIRNRYKGLKIHLKL"
     gene            2758..>2930
                     /locus_tag="VFX26_03595"
     CDS             2758..>2930
                     /locus_tag="VFX26_03595"
                     /inference="COORDINATES: protein motif:HMM:NF024773.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HEX5573590.1"
                     /translation="MGRTDKHTDEEIRKIYNFKNIAVVGMSRDPAKAAHFVPKYMIER
                     GFNVIPVNPSAVE"
BASE COUNT          889 a          579 c          481 g          981 t
ORIGIN      
        1 tctcctgcgt tgattgtcaa taatgtacta tttacagcaa ctacaactat gaatagatag
       61 tgtgtagtgc gtcgaagcca gaccattacc aaatgtctcc taaaggttct atataaaatt
      121 ttattttgat attcttaatt aatgcctagg caaaaattga tacgttggaa aaattttttc
      181 gaaaatttgc tttgtgaaaa atattctagc tataattaga ttattctaat gatcctgaaa
      241 tcactctcaa aagtcgaaga ttaaaaaaat aagttataat aaaaataaag tttaggcgta
      301 gccgagtttt tctctagaga ttttcattat ccagaagaat cctagtgctt caattactgt
      361 caatactgat agagcataaa gtccacttgg taacggatat gcccatgggt aaacagttac
      421 accgacgtac acaccaccag ctgttgcaac ccaacaaagt atgaagccta tgatgaaaac
      481 tggtgtcata ttttctacac gtctaccgat catatgttca atttcgtcct tactgccgcc
      541 ggtacggcca ccgccgccgc caccgccact atatcccttt ggataggtca ttgtgtttac
      601 catcaaggga ttccttttta aattttgcgt ctaataccag ctaacttaat tttttttatt
      661 agaaatttct accattctta ctgatagttt aagaatatta gcatgcacaa gtcaatatta
      721 tcgttaaata ataactagat acgcaacgag aaggtaaagt catagcaaag catatatcat
      781 tgttttttct gatatgggct aggtgtaaat tatacgtcga acataaagat agcggtagtt
      841 gcactatttg caatagtaat gtccacttcg acaataatag caattgctca aactgctgaa
      901 ggacatggag ttcaagctca gcttcagagc agattcgtaa gaattcagga tgaggccttc
      961 tcagcgcaaa cattgaatac aggagatcag ttgattgtaa ctggaaatct acaaagtctt
     1021 gtaaataaac cattaagagc atggttatca ctatttagtg agtcaaccaa cgctggtaac
     1081 agatgggagt ttatagcaag agatcctcca ggaaacatat ttgatattcc tccacaagga
     1141 acaattccat attcaattac tgcaaaagct cttgagccag gtgtttacca tgttcataca
     1201 cagttaaatg ttgaacacgt aggtcctgga cttggtcctg gtcaaaccat acaggtttct
     1261 ggggaagcta tattgaaacc agttccgtgg ggcaatgtta catatcaggt aatactgatt
     1321 ggtgctggac ttggcataac gtttgcaaca agaccgtggc aagtaattta aaaaatccac
     1381 tattttttat ctattttttt agttctttaa tttagtaact atttgttaag tcgttggaga
     1441 atataacgta caaaaaaatt ataattttag gtgtatcttt aagcctttgt atctatttct
     1501 tatcgttact tcagttactc cagcagcttc tgcgacatct ttttgagtct tgttctctcc
     1561 attcattaca caagctacat acagcgcagc agcagctaat cccatagggt cttttcctgc
     1621 agagattttg ccttgttcag cttttttcaa gatttccaaa gcttttcttt tagttttttc
     1681 ggaaagtcct gacttacttg caattcgtgc tacacacttt acaggatcta cgacaggcat
     1741 tttcaagtca agctctctaa ttaatagtct ataacatctg gctacgtctt tcttcttgat
     1801 attacttgca tgagcaatat ccttcaacgt tcttggagtc tccgtatccc tacaagcagc
     1861 ataaagtgca gcagcaacta gggcggaaat agatcttcct cttactagcc ctttttcaag
     1921 tgcttttctg tacacatatg cagctttttc aatcacagca tcgccaactg caagtttatc
     1981 ttttagccta tccaattcgc taaaagcttg cctaaaattc cgatctacag gttcatgtac
     2041 ttgacttctg ctatcccatg ttcttaacct ctcaattgta cttttcatgg atgcggaaag
     2101 tggctttcct gacgcatcct tatcgacagg tccaattatt gtggcaagtc ccatatcatg
     2161 catagcaagt gacgttggaa tgccagctcg acttcggtct tcatgttctt cctttgaaaa
     2221 tgctctccat tctggaccag tttcttcaat gcgttcagta actacgaatc cacaatttcc
     2281 acaaaacatt tccccacttg aattatctgt gaccattgga ccttttccac atctcggaca
     2341 gcggtcactg aacaaagaaa tatctttaac caattttaat accccacaaa aattgagaca
     2401 atgtttgttt cttatattta tgttttattc tcatatatat gcattgtcat aaatatttct
     2461 gggatggtaa tatatagagg aaattttgga acttttccaa actagagctt aattttgtgc
     2521 ttttttttct agtttatccc agaattttca aatttatcag aatcttttca gaatcttgga
     2581 atatttcttt ttcttctttt agatttttct atttttttac tttcacttct tttggcgcta
     2641 taagcatgag actttctgga taatttcaca aaccattaca aatcgtttca atataaatac
     2701 tatatagcat caacaccgca tcttaatcat tttaagtgat tatcatgatg aatacatatg
     2761 ggtagaacag ataaacatac agacgaagaa attcgaaaaa tatacaattt taagaatata
     2821 gcagttgtag gaatgtcaag ggatccagcc aaagccgccc actttgttcc caaatatatg
     2881 atagaaagag gatttaatgt aataccagta aatccttcag ctgtcgaaat
//
LOCUS       DASUMD010000130         5587 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_475690, whole genome shotgun sequence.
ACCESSION   DASUMD010000130 DASUMD010000000
VERSION     DASUMD010000130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5587)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5587)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5587
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_475690"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(56..631)
                     /locus_tag="VFX26_03600"
     CDS             complement(56..631)
                     /locus_tag="VFX26_03600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573591.1"
                     /translation="MPILQIKEIIDLLGLDDIKCRIGRYDSDIPQRYRPYFEKWLGNR
                     DGFIRMLSGSIDYVGSEDVVRMGPFHNIYCLVQNQYLAENDLNHQNLLNSKLWYSLND
                     GVVDEAGWSGSILASRLTKDQHNSNFLFQSLKSEVTRTVSVRVVNMGCLIECRIWHPR
                     EFVFLYEFLDNIAMNIQDLLSEVHVGENMTR"
     gene            complement(673..2163)
                     /locus_tag="VFX26_03605"
     CDS             complement(673..2163)
                     /locus_tag="VFX26_03605"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF002074.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HEX5573592.1"
                     /translation="MVIIEPENNISSLKTQLLANYVFTDQVSSLSLSGITTDFDPIIR
                     EIVETREFTAKEGSICVIHNTVGSNIKRVLLLGMGDKKNLDPEKTRNLTGKVVNKSKE
                     LAINEFVLVPFMEMDKDHLSAIVEGIKLSDYSFNNYKKDEDGTDLNQVRILIGKDLDT
                     NQTVIRNSSVLSDAVIFTRDISNLPPNDCSPKVLANFSEKLSENKKTKVRVIEKEEME
                     SYGFGGILAVGRGSSSSPKLIVIEYSGSTKNDKPIVIVGKAVTFDTGGISIKPSEKME
                     EMKYDKCGGCNVIGIMKAVSDLNFDVNVIGIIPAVENMPSGNSYRPGDIIRMYNSKTV
                     EVLNTDAEGRIILGDALAFAVKTFAPRSIIDMATLTGAAIIALGSNVAALVGNNKELV
                     TKILEYSNQTGEKIWELPLFEDYKEQLKSSNAGMKNIGGRGAGAITAAAFLSNFVDDT
                     PWVHLDIAGTAYNQEGTKEKTYNPKGATGFGIRTIIKYIASHNAEK"
     gene            2461..3837
                     /gene="gvpD"
                     /locus_tag="VFX26_03610"
     CDS             2461..3837
                     /gene="gvpD"
                     /locus_tag="VFX26_03610"
                     /inference="COORDINATES: protein motif:HMM:NF018455.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gas vesicle protein GvpD P-loop
                     domain-containing protein"
                     /protein_id="HEX5573593.1"
                     /translation="MVNIVNRTNHSLHDIPSELEEFLKNDTYSLLVKGLSGTGKTTFS
                     LSILRSLKAKNNFFYICTRSSPKQMFEHYPWLRKFIKEPNKDIDSPDVGQNLSAFEDA
                     RLDEPESLFERVTNQLMDVKNPVIIIDSWDSVASLMDREARLNNERVLQTWRERAKAK
                     LIFTSEESVESSLEYIVDGVVELNYELIDGIRTRSLFLKKLRGIPIKRSVYFFTLKDR
                     ILRCFDSYDPRDFRINKGDKIPKETDYSTHLLQTGYPDLDNYIGGTLPQRGLITIEKE
                     DTISNDITVLFLNDLFYNFSRRRYSLLLDSGLKDVSTDMHKSKNQNYKLHVMDELRSP
                     ESSAAQDRIKRKNDFYKYVDKAVSGFENVGKIVAMVESKSLDNFISDTSDINDCCKFI
                     KSKFELSFLILNSNNNLERYYSLSDIHLKFILICGTLFLKCSTPASAVFGIKVVNSVP
                     QIQLDHVL"
     gene            complement(3820..4128)
                     /locus_tag="VFX26_03615"
     CDS             complement(3820..4128)
                     /locus_tag="VFX26_03615"
                     /inference="COORDINATES: protein motif:HMM:NF026297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEX5573594.1"
                     /translation="MKNRSKYGVIAAILRSAIREETRTKIMYKAMLSNDQCRNYIDSL
                     LNFGLIMEHNNGTKMVYKVTNKGSTFLDYYEQMIHLLPMSLEERSEEESYGIKLQNMI
                     "
     gene            complement(4317..4562)
                     /locus_tag="VFX26_03620"
     CDS             complement(4317..4562)
                     /locus_tag="VFX26_03620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573595.1"
                     /translation="MTKGRICTLAPSHIVSILSENEEYMIGLVCSDHILLMKSKTISM
                     QKSGKIDNGRIKFQKIKPVVTDCLLNQNNKDHSGNCV"
     gene            complement(4727..>5587)
                     /locus_tag="VFX26_03625"
     CDS             complement(4727..>5587)
                     /locus_tag="VFX26_03625"
                     /inference="COORDINATES: protein motif:HMM:NF012600.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573596.1"
                     /translation="TLVLDVLSSEYVCSTCGCVSNEKIYNNDLPYFEKGEYKDKSRIG
                     MPESLTISHKGLSTLIGLNDTDGRGKMLDPVQKETIQRLRTWNNRSQLNDSISRNLDK
                     ALKYLNNFGDKLYLSPAVMENAAYIYRKAAMRKLAKGRSTVSLVAASIYAACREISIP
                     KTISDIANVCNIPSKEIMSHYKLILKELSLKIPVIQGIDYVTLISNRLKLTEKTKREA
                     IRIFSLVQYSRISIGKNPRAFAGAIIYIASQDCNEFLRQVEVCQVADISTVSLRKRCK
                     EIKTVLQSQQ"
BASE COUNT         1773 a         1039 c          866 g         1909 t
ORIGIN      
        1 agcagtgctg gcattttagt atcatggcat tccgatctgt cttaccaaat gctgtttagc
       61 gggtcatatt ttctccaaca tgcacttccg aaagcaagtc ttgtatattc atggctatat
      121 tatcaagaaa ttcataaaga aaaacaaatt ccctcggatg ccagattcta cactcaatta
      181 agcaacccat gttaactaca cgaactgaaa ctgttctcgt gacttctgac tttaagctct
      241 gaaataagaa attgctattg tgctggtctt tagtcaatct agatgctaaa atactgccac
      301 tccaacctgc ttcatccacg accccatcat tcaaactata ccagagtttt gaattcaaaa
      361 gattttgatg attaagatcg ttttcagcca agtactgatt ttgaacaaga caatagatat
      421 tatgaaaagg tcccattctt acaacatctt ctgaaccaac ataatctata cttcctgaaa
      481 gcattctgat aaagccatct ctattaccca accatttttc aaaatacggt ctgtatcgtt
      541 gtggtatatc agaatcatat cgtccaattc tacattttat atcatccaag cctaataaat
      601 caattatttc tttaatttga agaattggca aggatatcat aattgctagt tacattatag
      661 cctttgtatt cattatttct ctgcattgtg gctcgcaata tatttgataa ttgttctgat
      721 accaaaacca gtagctccct tcggattata tgttttttcc ttagtgccct cctggttata
      781 ggctgtccca gcaatgtcca aatgtaccca aggagtatca tcaacgaagt tggataaaaa
      841 tgccgcagca gtaatagctc ctgctcctct tcctccaata tttttcatgc ctgcattaga
      901 gcttttcaac tgttctttgt aatcctcaaa aagtggaagt tcccaaattt tctcaccagt
      961 ttggttagag tactcaagaa ttttcgttac caattcttta ttgtttccta ccagtgccgc
     1021 tacatttgaa ccaagggcta ttatcgccgc ccctgttaag gttgccatgt cgattatcga
     1081 tcgtggtgca aacgttttca ctgcaaaagc gagtgcatct cccagaatta ttctaccttc
     1141 tgcatcagtg tttaaaactt ctacagtttt actgttatac atcctgatta tatcgccagg
     1201 tctgtatgag ttacctgacg gcatgttctc tacagcgggt attataccaa ttacatttac
     1261 atcaaaattg agatcagaca cagctttcat tattccaatt acattgcatc ctccacattt
     1321 gtcatacttc atctcctcca ttttttcaga aggcttgatc gaaattcctc cagtgtcaaa
     1381 cgtaacagcc tttccaacaa ttacaattgg cttgtcattt tttgttgaac cagaatactc
     1441 tattacaatt agtttaggag agctagaact tcctctacct acggcaagga ttcctccaaa
     1501 tccataggat tccatctcct ccttctcaat aactcttacc ttggttttct tattttctga
     1561 cagtttctct gagaaatttg caagtacttt tggtgaacag tcatttggtg gcaaattact
     1621 aatgtcgcgg gtgaatatca ctgcatcaga tagcactgag gagtttctga taacagtttg
     1681 attagtatcc agatcctttc ctatcaagat cctaacttga tttagatcag tgccatcttc
     1741 atccttctta tagttattaa atgaatagtc cgataatttg attccctcta ctatggccga
     1801 taagtgatct ttatccatct ccatgaaagg aaccagtacg aattcgttta tggccaattc
     1861 ttttgattta ttgactactt taccagtcaa attcctagtt ttttcaggat ctaaattttt
     1921 cttatcaccc attcctaaaa gtaaaacccg ttttatgtta gaacccacag tattgtggat
     1981 gacacatatt gatccctcct tggctgtaaa ttctctcgtt tcaacaatct ctcttattat
     2041 aggatcaaaa tcagtggtaa ttcctgaaag cgacaaggat gaaacttgat ctgtaaagac
     2101 gtaattcgcc aatagttgag ttttcagcga tgaaatatta ttctcaggct caattattac
     2161 catgttcaaa atcagaagta tactttattt taaagtattg aagccacaac caaaactcat
     2221 tatcttggat tcatatgaac aatttagaca ttcaacaaaa gaaataaaaa tacaagaaaa
     2281 aatgtattag aaaaatcaaa ataaatcctc ttgcagtaaa ttcaattggc cgatagagat
     2341 cgtgagaata gtgccatctt gatacaatac cgataaatgt gtaagaatca agaataagaa
     2401 tctaggacat ttattaaata tctataagtg tgagtaatgt caaatcgatg aagaacagat
     2461 atggtcaata tagttaacag aactaatcat agccttcatg atattccatc agaacttgaa
     2521 gaatttctga aaaatgatac ctattcctta cttgttaagg gtctatcggg aacaggtaaa
     2581 actacctttt ctctaagtat tctacgttca ttaaaagcaa aaaacaattt tttctatatt
     2641 tgtaccagat cttctccaaa acaaatgttc gaacactatc cgtggctacg aaaattcatt
     2701 aaagaaccaa ataaagatat tgacagtcca gatgtcggac aaaatctttc agcttttgaa
     2761 gatgctcgct tggacgagcc tgaatcacta tttgaaaggg taactaatca gctgatggat
     2821 gttaagaacc ctgtgataat aattgatagc tgggattctg ttgcttcatt aatggataga
     2881 gaagcccgat taaacaatga aagagtactt caaacatgga gagaaagagc taaggcaaaa
     2941 ttgattttta caagtgagga atcagtagaa tccagtctag aatatatcgt ggacggtgtt
     3001 gtagaattaa attatgaact tattgatggc atacgaactc gaagtttatt tctcaaaaaa
     3061 ttaaggggaa ttccaatcaa gagatcagtc tatttcttca ctctaaaaga tagaatattg
     3121 agatgttttg atagttacga tcctagggac tttaggatca ataagggtga caagattcca
     3181 aaagaaacag attattctac gcacttattg caaacaggat atccggatct tgacaattac
     3241 attggaggta ctttaccaca aagaggactg ataaccattg aaaaggaaga cactatatca
     3301 aatgatataa cagtattatt tttgaacgat ttattctata atttttcaag aaggcgttac
     3361 tccctacttt tggattctgg attaaaagat gtttcgacag atatgcacaa atcgaaaaat
     3421 caaaactaca agttacacgt catggatgaa ctccgttcac cagaaagttc tgctgctcag
     3481 gatagaataa aacgaaaaaa cgatttttac aagtatgtag ataaagcagt ttcaggattt
     3541 gaaaatgtgg gaaaaatagt cgctatggtg gaatcaaaat ccttagataa tttcatatca
     3601 gatacttctg atattaatga ttgttgtaaa ttcattaaaa gtaaatttga actttcattt
     3661 ctaattctaa attcaaataa taatctagaa agatattact cactatcaga tattcatctc
     3721 aaatttatac taatatgtgg aactcttttc ttgaagtgtt cgacacctgc ttcagcagta
     3781 tttggtatta aggttgttaa ttcagttcct cagatccaat tagatcatgt tttgtagctt
     3841 aatgccgtag gattcttcct cagatctctc ctctagtgac ataggtagca gatgtatcat
     3901 ttgttcataa tagtctagaa atgtgcttcc cttgtttgta actttataca ccatctttgt
     3961 tccattatta tgctccatta taaggccaaa attcaatagg gaatcaatat agtttctaca
     4021 ttggtcatta cttaacatcg ccttatacat tatttttgtt cttgtttctt ctctgattgc
     4081 agatctcagt attgctgcta tgaccccgta cttacttcta tttttcattg cccaataact
     4141 gaagttatac aatataactg gagtgaaact attaaataga aacttaaatg acaaaattca
     4201 actacaaaaa ttagaatgac gttttattct atttatctat cccattcttg ttccataaaa
     4261 taagactaat gaatgtttga ttaaatttgc tttaaaaaat catatgattt ttgttcttat
     4321 acacaattac cagaatggtc cttattgttt tgattaagta aacaatctgt cacgactggt
     4381 tttatttttt gaaattttat tcttccattg tctatttttc cagacttctg cattgaaatc
     4441 gttttggatt tcatcaacaa aatatgatcg ctacaaacta aaccgatcat atattcttca
     4501 ttttctgata gtatggaaac aatatgcgag ggagccagag tacatattcg cccctttgtc
     4561 attatagaac atctttctgg aaccattctt agttatagat tctgatgcat tatatgttat
     4621 aatcctttgt ttgtatatga aaaatattat tctataaaat gctattttta gaatgaaata
     4681 agaaaactaa ttttgaaaaa aaatgggcat aaattttcac attaccctat tgttgacttt
     4741 gtaaaactgt ttttatttcc ttgcatcttt tccttaaaga aaccgtggaa atatcggcca
     4801 cctggcatac ttcaacctgg cgcaaaaatt cattgcagtc ctgtgaagca atgtaaataa
     4861 tagctccggc aaaagcacgt ggattttttc caattgaaat tctactatat tggacaagtg
     4921 aaaaaattct tatggcttcc ctttttgtct tttctgtaag ctttaatcta tttgaaataa
     4981 gggttacata atcaattcct tgaataacag gaatctttaa tgatagttcc tttagaatca
     5041 atttataatg agacattatt tccttacttg gaatattaca aacgttggct atatctgata
     5101 ttgtttttgg tattgatatc tccctacaag ctgcatatat ggaggctgct acaagggaaa
     5161 cggtagacct tcctttcgcc aattttcgca ttgcagcttt gcgatatatg tatgctgcat
     5221 tttccataac ggcaggactc agatagagct tgtcgccaaa attattcaga tattttaatg
     5281 ctttatctaa gttccttgaa attgaatcat taagctgaga tctattattc catgttctta
     5341 atctttgaat cgtttctttt tgaaccggat cgagcatttt gcctcgtcca tcagtgtcat
     5401 ttagtccaat taaggtagaa agtcccttgt gactgattgt caacgattct ggcatcccta
     5461 tacgagattt atccttgtat tctcctttct caaaataggg cagatcgtta ttatagattt
     5521 tttcgttaga aacacaacca caagtactac aaacatattc acttgagagt acgtctaaaa
     5581 caagcgt
//
LOCUS       DASUMD010000131         2601 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_918330, whole genome shotgun sequence.
ACCESSION   DASUMD010000131 DASUMD010000000
VERSION     DASUMD010000131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2601)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2601)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2601
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_918330"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            271..459
                     /locus_tag="VFX26_03630"
     CDS             271..459
                     /locus_tag="VFX26_03630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573597.1"
                     /translation="MFFNKSPNEVILVELEAVVLHGSSLTQSVVVQFPFSHFVVILVR
                     NCVLENGRIGLEDKIKMR"
     gene            732..1028
                     /locus_tag="VFX26_03635"
     CDS             732..1028
                     /locus_tag="VFX26_03635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573598.1"
                     /translation="MTLEQILQQEIKDTKTWLSREKEESTYKRDLEKRIELINWVLEN
                     MKNPDIQICSLIKSKMNEIILTINQTYSIFESDKLHSELRILDWILYQVCINDK"
     gene            complement(1090..1296)
                     /locus_tag="VFX26_03640"
     CDS             complement(1090..1296)
                     /locus_tag="VFX26_03640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573599.1"
                     /translation="MFREIPESLRNRLIIIFKVTTTSHIQSHYKIFCGCKSFKRIPGG
                     ELAYGKKESVNVLLGTPVYVSLVE"
     gene            1483..>2601
                     /locus_tag="VFX26_03645"
     CDS             1483..>2601
                     /locus_tag="VFX26_03645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573600.1"
                     /translation="MVGLFERQIQKLRERINRDGDKIDETFRVGVEIEGCLLDKKGTP
                     VNAEPLIKELEGSAYEIDYEYGRCQFEFKTSPVGMDNLEYLNIVFEQFIENLDKYLKK
                     AYKENEVIPVFLGANPSPEIMKEGLITDKPRYNKLASWQNNLPDVEIDGNKFRAAHVA
                     TAIQGFHLHLQGKNPQNTANMFNHILNILPSAIVLGANSRLFAGRIYSLHEPRIHLYD
                     QSEQQNSGFPAIPRYLEGIENYIDYISSREQNVAKDYFTLEKERHDDARIRIGPDSYR
                     VETRIMSVQPTSKSLMAMAEFFIGYLSRAIHEERELRSLSTLREERMAAVQYGYNAKS
                     HFNITDIIRSQLDFARKGLNDLGINVGFLNILDKRLENR"
BASE COUNT          935 a          388 c          473 g          805 t
ORIGIN      
        1 acaatatcag aagattataa ttggttggtg catgtccggt gaaagaaagc accaaccagg
       61 gattttatcc atctgccctt aacgatgaat tcaagatgga caaaactcca atcattaaga
      121 ttttatttaa attttctaat acagataact aattgaaaaa atatataaaa taaaaaatta
      181 gaaatattaa gaattcctat gtattcaaag taactgaata cattttatat ttatatcact
      241 tcattaggca tagatggtgc taagatagtt ttgtttttta acaaatcccc aaacgaggta
      301 atacttgtgg aattggaagc cgttgttttg catggttcat cattgacaca aagcgttgta
      361 gtacaattcc cattttcgca ttttgtagtg atattggttc gaaattgtgt attagaaaat
      421 ggtagaattg gattagaaga taagataaaa atgagataga taacaggaat acaagaaatc
      481 attaaattcg atttagtttt tgtaatcata tcatagatct gtcaaactgg aatttttatt
      541 tttgcacgct aagtaactaa ggtaagtcat gttcttatat taactaacat caatttaatt
      601 agagagaacc tacttttcaa taaccgatgg gattctctat cgtcaccacc tatcccatcg
      661 gttttaagtt ttagcagtcc ctccctttaa cgaacgctgg gttttaaatc ctaattagtt
      721 gaatacactc tatgacttta gagcaaatat tacaacagga aattaaagat acaaaaactt
      781 ggcttagtcg agaaaaagag gaatctacgt acaaaagaga tcttgaaaaa aggattgaat
      841 taataaattg ggtgttagaa aatatgaaaa atcctgatat ccaaatttgt agtcttatta
      901 agtctaaaat gaatgaaatt atattaacaa ttaatcaaac gtattcaata tttgagtctg
      961 acaaactaca cagtgaacta aggatattag attggatact gtatcaagtt tgtattaatg
     1021 acaaatgaaa attaaatctg tagtaattgt taagtggtca ttggtaccat gttgagaaat
     1081 tggtgtgggt tattctacga gactgacata gacaggtgtg ccgagtaaaa catttactga
     1141 ctccttttta ccataagcaa gttccccgcc aggaattctc ttgaaacttt tacatccaca
     1201 aaatatttta tagtgagatt ggatatgact tgttgtggta actttaaaaa tgatgataag
     1261 tctattccgt aatgattcag gaatttctct aaacaagatc tgtaagactt tttcgtggaa
     1321 ttagaatgca gtgagtattg aaattaaaaa atacctcact attttcatct aatatttgca
     1381 ttcctttact tgcactactt ttaagatgag aactattaat taaattacat ttgcgcatga
     1441 gttaagataa cttaaatcac aaggaatcaa gacatacatt agttggttgg tttatttgaa
     1501 agacagattc aaaagttaag agaaagaatt aatcgcgatg gtgacaaaat cgatgaaacc
     1561 ttcagagtag gagtcgagat tgagggatgc ttacttgaca aaaagggaac cccagtaaat
     1621 gcagagccgt taataaagga acttgaaggg agcgcttatg aaattgacta tgagtatggt
     1681 cgctgtcaat ttgaatttaa gacctctcca gtgggaatgg acaatcttga atatctaaat
     1741 attgtatttg aacaatttat tgagaattta gataaatact taaaaaaagc atataaggag
     1801 aatgaagtta tcccagtttt tctgggtgct aatccttcac ctgaaataat gaaagaagga
     1861 ttgattacag acaaaccgcg atataataag ctggcctcat ggcagaataa tcttccagat
     1921 gttgaaatcg acggtaacaa atttagagca gctcatgtcg ctacagctat tcaaggattt
     1981 catcttcatt tgcaaggaaa aaatccacaa aatactgcaa acatgttcaa tcatattttg
     2041 aacatattgc cgtctgcaat agtacttgga gctaatagcc gactgtttgc tggaaggata
     2101 tattcgttac atgaaccaag aattcatctg tacgatcaat cagaacaaca gaattcgggg
     2161 ttccccgcaa ttccaagata ccttgagggc attgaaaatt atattgacta tatttcttcg
     2221 cgcgaacaaa acgtcgccaa ggattatttt acattggaga aagaaagaca tgacgatgca
     2281 cgaatccgta tcggtcctga ctcttaccgt gtagaaacta ggattatgtc cgtacaaccc
     2341 acttcaaaaa gcttgatggc aatggcagaa ttttttattg gttatttgag cagagccata
     2401 catgaagaaa gagaactgag atccctttcc acattaagag aggaaagaat ggccgcagta
     2461 caatatgggt acaatgcaaa aagtcatttt aatattacag atattataag aagtcaactt
     2521 gattttgcac gcaaaggttt gaatgattta ggtatcaatg taggattcct taatattttg
     2581 gataaaaggt tggaaaatag a
//
LOCUS       DASUMD010000132         2129 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1250411, whole genome shotgun sequence.
ACCESSION   DASUMD010000132 DASUMD010000000
VERSION     DASUMD010000132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2129)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2129)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2129
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1250411"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..520)
                     /locus_tag="VFX26_03650"
     CDS             complement(<1..520)
                     /locus_tag="VFX26_03650"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: protein motif:HMM:NF014641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HEX5573601.1"
                     /translation="MSLCGVTVAITSSRRASELASLVRKFGGIAYIAPTIGIKNNNAL
                     NSECIKFIETIRNERMQFFVFMTGVGVFNLFQNIQKLDHLDTVIEKLRDTVVIARSNK
                     PAMELRKFGIRTNLVPDINTIEGILNLLGNFDIKNKNIGILWHGDYSHSFREKLESLG
                     SKVFEFSSYSYAT"
     gene            complement(757..1170)
                     /locus_tag="VFX26_03655"
     CDS             complement(757..1170)
                     /locus_tag="VFX26_03655"
                     /inference="COORDINATES: protein motif:HMM:NF014091.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF126 domain-containing protein"
                     /protein_id="HEX5573602.1"
                     /translation="MDYSLRCKVIVGGRAKGRILSTKQPINFLSSVDHLTGLITDKNH
                     DLCGEFLKDNLLVFPYAVGSSVGAYSIFALKCNGVSPSGIICTLKTDITTASGCAIAN
                     IPLLELSKDQEIPEIENFSEGKVDGISGILQIKKV"
     gene            complement(1181..>2129)
                     /locus_tag="VFX26_03660"
     CDS             complement(1181..>2129)
                     /locus_tag="VFX26_03660"
                     /inference="COORDINATES: protein motif:HMM:NF016310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aconitase X"
                     /protein_id="HEX5573603.1"
                     /translation="RFLVPTTINPMGYDSHKQNNLSSNFKKQQVQITKAYEKMGSVPS
                     FSCIPYELFQLPERGHNVSFAESNAAVMANSVFGLHTNKESSLSALASAVTGKAPYSD
                     LRINSKRDPKIKIKIEKELKTELDYGILGYFSGNSVKESCVSFGSQISNIDMYKTKSL
                     AAALGTSGACGMFSNKEVYDESISYGKEEEKSTIDELNTTDSGDVIALGSPQLGMYEL
                     ELISNMIGGNKFSKKCMIFCPRPIYEKSCKSGIVQRLENAGASIICDACTCLSPLLSH
                     EEYDGVITNSVKAAHYLNKSNGVSVCLKDIKSIIRNYTK"
BASE COUNT          624 a          427 c          339 g          739 t
ORIGIN      
        1 ttgtagcata actatacgat gaaaattcga atacttttga acctaaagat tcaagctttt
       61 ccctaaatga atgtgagtaa tcaccatgcc ataatattcc tatgttcttg tttttaatat
      121 caaagtttcc caaaaggttc aatatccctt caatagtatt gatatcggga acaaggttgg
      181 ttctaattcc aaattttctt agttccattg ctggcttgtt acttcttgca atgactacag
      241 tatctcgtaa cttttcaatc acggtgtcca agtgatctaa tttttgaata ttttgaaata
      301 gattgaatac acccacacca gtcataaata caaaaaattg cattctctca ttcctgatgg
      361 tttctataaa tttaatacac tcagaattca gcgcattgtt atttttaatt cctatagttg
      421 gtgctatata tgcaatccct ccaaactttc gaactaagct tgcaagttcg gaagctctcc
      481 ggctcgatgt aatggctacg gtaactccac ataatgacat gcaacaatct tggaatctta
      541 gaataattaa aacttgagtt tataacgatt gaacaggcta gtccaaatat attcagctaa
      601 tttttataaa ttctgattat ttacagtcta cgacaaagtt agtctgcata ttgcaaaaca
      661 taaacggtgc atggactttt ctcttcatat cctttgtatg gatctggtcg cccgtcaaat
      721 gccatgcacc ttttgaaata aaaaaaccaa attaaattaa acctttttga tttgcagtat
      781 tcccgaaata ccatccactt ttccttcact gaaattctcg atctctggaa tttcttgatc
      841 tttagagagt tctagtaatg gtatatttgc aattgcgcat cctgaagccg ttgtaatatc
      901 agtctttaaa gtgcatatta ttcctgatgg tgatacccca ttgcatttca gcgcaaaaat
      961 cgagtaagcg cctacactac ttccgacggc gtatggaaaa accaaaaggt tgtccttaag
     1021 gaattctcca cacaagtcgt gattcttatc ggttatcaat ccggtcaaat gatccactga
     1081 agataaaaag ttgattggtt gctttgttga cagaattctt ccttttgccc tccctcctac
     1141 aattactttg catcttagag aataatccat ggcagatcta ttattttgta taattcctaa
     1201 taatggattt tatatccttc agacatactg atacaccatt agatttgttg agatagtggg
     1261 ccgcttttac actatttgta attacaccat cgtattcctc atgtgataac agaggtgata
     1321 aacatgtaca tgcatcacaa attatgctcg cgccagcatt ttcaagtctc tggactattc
     1381 cggatttgca agatttttcg tagattggtc ggggacaaaa gatcatgcat tttttagaga
     1441 atttattccc gccaatcata tttgatatta actccaattc gtacattcct agttgaggac
     1501 tccccaatgc tattacatct ccagaatcag ttgtgttgag ttcatctatt gttgattttt
     1561 cttcctcttt tccataagat atgctctcat catatacttc cttgttagag aacatgccac
     1621 atgcacctga agtacccaag gcagcagcta gagacttggt cttatacatg tctatgttac
     1681 taatttgaga gccaaaagaa acacagcttt cttttaccga attaccagaa aaataaccca
     1741 atattccata atccaattcc gtcttgagct ctttctctat cttaattttt atttttggat
     1801 ctcttttact gttaattctg agatctgagt agggagcctt accagtcacg gcactagcta
     1861 aagcgctaag agaactttct ttgtttgtgt gtaaaccgaa tactgaattt gccattactg
     1921 ctgcattgct ttctgcaaag ctgacattat gccccctctc tggtaattga aataattcat
     1981 aagggataca tgaaaatgaa ggcacagaac ccattttctc atatgccttg gttatttgaa
     2041 cctgttgttt cttgaaattg ctggataagt tattctgttt atgactatca tatcccattg
     2101 gattaattgt tgtgggaact agaaatcgt
//
LOCUS       DASUMD010000133         2962 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1250903, whole genome shotgun sequence.
ACCESSION   DASUMD010000133 DASUMD010000000
VERSION     DASUMD010000133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2962)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2962)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2962
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1250903"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..820
                     /locus_tag="VFX26_03665"
     CDS             <1..820
                     /locus_tag="VFX26_03665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573604.1"
                     /translation="ETEGNVTETEEQPAITDELSTEGNVTETEEQPAITDELSTEGNV
                     TETGEQRNEDGSLQGGKSITVEEVPTKTTDFPVEEPTDGNVTIKGQLTNNTIQDSSIT
                     TSSELQPLEATGTQDEDQQQQQPLEEEATGTQDEKKIKVSEICDDELDNDHDGIIDEE
                     HDCLSRTSDSTSTSEKIVPELATLDDDDKDKAKDEANIQTERNSDKAQVTDDSKKSKN
                     KNNELVQEDRTSLESLDPEMQPSGVDILTTTEICNDEMDNDLDASIDEKDCISK"
     gene            1061..2749
                     /gene="ilvB"
                     /locus_tag="VFX26_03670"
     CDS             1061..2749
                     /gene="ilvB"
                     /locus_tag="VFX26_03670"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005948 - acetolactate synthase complex
                     [Evidence IEA];
                     GO_function: GO:0003984 - acetolactate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009099 - valine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic-type acetolactate synthase large
                     subunit"
                     /protein_id="HEX5573605.1"
                     /translation="MVEMIGAKALIASLEKEGVDIVFGLPGGANLPIYDELVDANFRH
                     VLVRHEQAAAHMADGYARIKRKAGVCIATSGPGATNLITGIATAHADSIPMVAITGQV
                     PVAMIGKDAFQETDIIGISNPCTKYAFQPRKAVEIPEVIKKAFYITESGRPGPVLVDI
                     PKDVQQEKAEIKFPELIKVRGYKPAFDPDLSQIEKAIDLIMKAEKPIIMAGGGVILSG
                     AFNELQALAEILMCPVVTTFKGKGAFPENHPLAMGPIGMHGHAEANKIIIEADCIIAI
                     GARFSDRSVGRFDEFGKGMSIIHLDVDPAEIGKNKSVDVAVVGDVKSSLRTLVKMLTT
                     KGIRKDPDNSWLKRRKELIEYYTSTIKDYSREITAKKTLKKLRELLPSKSIVTTEVGQ
                     CQMWASLHFDVITPGTFFSSTGLGTMGFGFPASIGAKAAMPDVPVIDIAGDGSFNMTE
                     NSLAVSVLEKLPVIVFLLNNYMLGMVAQWQRTFYNRRYSGVEQNRCPDYVKLAESYGA
                     QGIRVQSMNDLDKAIKTGLSSDVATVIDIPIDPEEDVYPFVAPGSGLKDMIVGG"
     gene            2758..>2962
                     /gene="ilvN"
                     /locus_tag="VFX26_03675"
     CDS             2758..>2962
                     /gene="ilvN"
                     /locus_tag="VFX26_03675"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005948 - acetolactate synthase complex
                     [Evidence IEA];
                     GO_function: GO:0003984 - acetolactate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009099 - valine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HEX5573606.1"
                     /translation="MSSYNSETEIIEEKTLPYRILSVIVDNKPGVLFRVTNLFRARNF
                     NIESITVGTTEQHDISRMTIAIQS"
BASE COUNT         1086 a          445 c          619 g          812 t
ORIGIN      
        1 tgaaacagaa ggcaatgtta ctgaaacaga agaacaacct gctataactg atgagctgtc
       61 aacagaaggc aatgttactg aaacagaaga acaacctgct ataactgatg agctgtcaac
      121 agaaggcaat gttactgaaa caggggaaca gcgtaatgaa gacggatcat tacaaggagg
      181 taagtctata acggtagagg aagttcctac aaaaacaacg gacttcccag ttgaagagcc
      241 aacagatgga aatgtaacaa taaaagggca attaacaaat aatactatac aagattcatc
      301 aattacaaca tcttcagaat tacaaccatt agaagcaaca ggtacacaag atgaagatca
      361 acaacagcaa caaccattag aagaagaagc aacaggtaca caagatgaaa agaaaataaa
      421 agtttctgaa atctgtgacg atgaactaga taatgatcac gatggaatta tcgatgagga
      481 acatgattgc ctttctcgaa cctccgatag cacatcaact agtgaaaaaa tcgtaccaga
      541 attagcaact ctagatgacg atgataagga taaagcaaaa gacgaagcca acatacaaac
      601 tgaaagaaat tctgataaag cacaagtaac tgatgattcc aaaaagagta agaataaaaa
      661 taatgaacta gtccaggaag atcgaacatc tttggaatct ttagatcctg aaatgcaacc
      721 tagtggtgtt gacatactta cgactacaga gatttgtaat gatgagatgg ataatgattt
      781 agatgcatcg atagacgaga aagattgtat cagtaagtaa aaatgctatt tcaaccttaa
      841 ttattgtttc aaaatataaa aattttgatc attgagtaaa tgcagtctgg ttatatttag
      901 ataaatttgt aaatagctat ataaatagaa tattttatta tatttctatg gttgggatct
      961 aaggctcgat ttagaactac tcttgaagtc tagaatattt tagtagtact ttagattaag
     1021 ttttatccaa cttgtattat aaaaaaatgg agaaaaaatt atggttgaaa tgattggggc
     1081 aaaggcattg attgcttccc tagaaaaaga gggagtagat attgtttttg gcttgcctgg
     1141 tggtgctaat ttgcctattt atgacgaatt agtagatgca aattttagac atgtcttggt
     1201 acgacatgaa caagcagcag cacatatggc agatggttac gcacgaatta aacgaaaagc
     1261 aggtgtatgc atcgctactt ctggtccggg ggctactaat ctaataacgg gcatagctac
     1321 agctcatgct gattcaatac caatggtagc aattacaggc caagtaccag tggcaatgat
     1381 tggaaaggat gcttttcaag aaactgacat aattggtata tctaatccat gtacgaaata
     1441 cgcatttcaa ccaagaaaag cggttgagat tccagaagta ataaagaagg cattttatat
     1501 tactgaaagc ggacgtcccg gccctgtatt agtagatatt ccaaaggacg tacaacaaga
     1561 gaaggcagaa ataaaatttc cggagctaat aaaagttaga gggtataaac ctgcttttga
     1621 tccagatttg tcccaaatcg aaaaagctat tgatctaatt atgaaggcag aaaaaccaat
     1681 aataatggct ggaggaggtg taatcctttc aggagctttt aatgaattac aagctttggc
     1741 agaaatatta atgtgtccag tcgtgaccac ttttaaagga aagggggcat tccccgaaaa
     1801 tcatcctctt gctatgggac caattgggat gcatggacat gcagaagcga ataaaataat
     1861 aattgaggca gattgtatca ttgcaattgg tgcgaggttc tcggataggt cagtgggaag
     1921 attcgatgaa tttggtaaag gtatgagtat tattcattta gatgtagatc cagcagagat
     1981 tggaaagaat aaatccgtag acgtggccgt cgtcggtgat gttaaatcct ccttaagaac
     2041 attagtaaag atgctcacca caaaaggaat tagaaaagat cctgacaatt cgtggctgaa
     2101 gagaagaaaa gaacttattg aatattatac aagtacaata aaagattatt ctagggaaat
     2161 tactgcaaaa aagacactta aaaaattacg agaattatta ccttctaaat caatagtaac
     2221 cactgaagta ggccaatgcc aaatgtgggc ttctttgcat tttgatgtta taactccagg
     2281 aacttttttt agttcaacag gtctaggaac aatgggtttt ggatttcctg cttcaatagg
     2341 agcgaaggct gcgatgcctg atgtaccagt gattgatata gcaggggatg gatcttttaa
     2401 tatgactgaa aattctctag cagtttcagt attagaaaaa cttccagtta ttgtattttt
     2461 acttaataac tacatgttag gaatggttgc tcagtggcaa agaacttttt acaatcggag
     2521 atatagtgga gtggagcaaa atcggtgtcc tgattatgtt aaattggccg agtcatatgg
     2581 tgcccaaggt atacgagttc aatctatgaa tgatttggat aaagcaatta aaactggatt
     2641 aagttcagac gtagctacag taatagatat tccaatagat cctgaagaag acgtttatcc
     2701 ttttgtggcg cctggttcag gtttaaaaga tatgattgtg ggaggctaaa aaagaagatg
     2761 tcatcataca attctgaaac cgagattatc gaagagaaaa cattacctta tagaatatta
     2821 tctgttattg tagacaataa acccggtgtt ctttttagag ttactaattt atttagggca
     2881 aggaatttta atattgaaag tattacagtt ggcacaacag aacaacatga tatatcaaga
     2941 atgactattg caattcagag tg
//
LOCUS       DASUMD010000134         4632 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_146678, whole genome shotgun sequence.
ACCESSION   DASUMD010000134 DASUMD010000000
VERSION     DASUMD010000134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4632)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4632)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4632
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146678"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..394)
                     /locus_tag="VFX26_03680"
     CDS             complement(<1..394)
                     /locus_tag="VFX26_03680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573607.1"
                     /translation="MSGNVEPKLNAGYYRLMLYAALFGAFSSLLTAGYITLYNQGVKF
                     FGQPNLFLFNINFWPLGLLSVAGVFIGLAIKFFGQHGGLGVSQRQYAQTGRLNFRNLP
                     SILLQGFISLWSGAAVGPEGPLVFLTGSA"
     gene            complement(589..708)
                     /locus_tag="VFX26_03685"
     tRNA            complement(join(589..646,670..708))
                     /locus_tag="VFX26_03685"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(671..673),aa:Gly,seq:tcc)
     gene            complement(745..1323)
                     /locus_tag="VFX26_03690"
     CDS             complement(745..1323)
                     /locus_tag="VFX26_03690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573608.1"
                     /translation="MSENRFVSGNVIVLYCNFVKLESKEHLPQHIMERIAVCTRIYDR
                     IMKSKPDKSDTIIKVAADTGVGNIVKNDLLNNGIDESMIAVESSYNNIGHLFSVLMGE
                     IKKRPNPPMIYFVSSYQQKNIFDKATALYKGYKIQFEGAFDKRPIDDIEEDAKREKLS
                     KKFINIKEKGKNKMVDMLLNYIFPESKKRQSS"
     gene            complement(1357..1677)
                     /locus_tag="VFX26_03695"
     CDS             complement(1357..1677)
                     /locus_tag="VFX26_03695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573609.1"
                     /translation="MKPNNFAMRDWHLEHVEKVILRYMKGISPDASSFEKRNFKKYST
                     ISSCSKQIEYDIKHGVTAQEVADLMNKIRNDASYSEVRQNQDAIQRLDELERQLNSPK
                     KSSW"
     gene            complement(1797..3155)
                     /locus_tag="VFX26_03700"
     CDS             complement(1797..3155)
                     /locus_tag="VFX26_03700"
                     /EC_number="4.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiD family decarboxylase"
                     /protein_id="HEX5573610.1"
                     /translation="MRTRFEFNKIRGFTDFLNGLEKTDQLVKIKKSVNPKFELAGIVS
                     KLDKGKAVLFESVSESKIKVAANVLGTRYRIALSINAKNENMIQERIKEAIRNKSEIT
                     NIAHSNNWQKNSKNLYDLPIVTHFEKDSGAFITSSLVIAKDKETGNQNLSTHRLLRLD
                     KKSMAIRMVEGRHLHKCFTSAKEHGEDLPVSIIIGTHPAVSVAAAYQAPYGENELEMA
                     NSLMDNRLSMIKSPGTSLYIPKDSEILLEGRILADKTAEEQMVEMLRTYDMKRRQPIF
                     ELDNIYLTDDPIYHDILPGYGEHRLLMGLPIESKLFHSVQDVVSGTRAVHLTDGGSNW
                     LVAIIQISKKLEGEPKNAILAAFAGHPSLKIAIVVDDDIDPTNPTEVEYAISTRCQAD
                     KDLLIIPNSKGSSLDPSSDQNNLITTKMGIDATATLLKSKDRFEIAKIPKQDKIKLSD
                     YL"
     gene            complement(3158..3517)
                     /locus_tag="VFX26_03705"
     CDS             complement(3158..3517)
                     /locus_tag="VFX26_03705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573611.1"
                     /translation="MSETHQGNFIEKKINLKSNRVFLLKFIEFKNGCFVSISEDLCKI
                     GGIHVSVASNNRTQSARVIPNIKDPIFTKTLSEKISLMINGIVITNFNNKNPMSLSEM
                     QEIMNEVLKLLEARTSD"
     gene            complement(3681..4319)
                     /locus_tag="VFX26_03710"
     CDS             complement(3681..4319)
                     /locus_tag="VFX26_03710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573612.1"
                     /translation="MNGTPLGTAQNSNQIVVATVEGRPYYKIVSTLKSMNIRFSSLSP
                     EEASRTNAKIIITTRNEAAIFRREDLIFDFQLDTFPPLFKAMILKNLSGNFFEDILVV
                     GVDPGNRIGIYVLYLHAELYSTVQSSLKDAVKFIMNILSCIKSNKKILKIGNGDWTKC
                     NHIAQEIRNLNRSVRIEIVNEFGTSRNILPNCRGNRDVGSAKSIALRSGRIF"
     gene            complement(4375..>4632)
                     /locus_tag="VFX26_03715"
     CDS             complement(4375..>4632)
                     /locus_tag="VFX26_03715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573613.1"
                     /translation="MKKRIISTSDKEITQLREKIIEVAKTESEKIISTAKQEAEEKSQ
                     KILEEAETNLTKLRENTKLSFDKSVKLVVDSVLNKAYTTEP"
BASE COUNT         1299 a          890 c          742 g         1701 t
ORIGIN      
        1 cagcactacc tgtcaaaaaa acaagtggtc cctcaggacc gactgcagca ccactccata
       61 acgatataaa gccttgtaga agtatgcttg gtagattgcg aaagttgagg cgacctgtct
      121 gggcatattg gcgctgtgaa acccccaatc ctccatgctg cccaaagaac ttgatagcaa
      181 ggccaataaa cacaccggcg acactcaaca gtcctagtgg ccaaaagtta atgttaaaca
      241 agaagagatt tggttgccca aagaacttga caccctgatt atagagtgta atgtatccag
      301 ccgttagcag cgaggaaaaa gcaccgaata acgccgcata gagcataagt ctataatatc
      361 cggcattcaa ttttggttct acattaccac tcattcgaat ctacaccgtt atccatccaa
      421 tcaaacatct aatgaatgca tgatcttttg aggttgcatt gacttcactt gaatttttat
      481 gcagacacac tacacttaac cacaaaatgt tgataaaaaa ggtattgctc aatgcattcg
      541 taaatatcta gcgaatccta tgtgttggat acgaattcct ataataattg cggtcaccgg
      601 gatttgaatt cccgctccaa tcagatagag tcccgggtta cgggctttct tctccatagt
      661 ataatggaat ggaaggccag tgtcctaacc aaactagacg atgaccgcat atcttttatg
      721 cgatgataat ctggatatta aatcttatga agattgtcgt ttcttacttt ctggaaagat
      781 ataatttaag agcatatcta ccatcttgtt ttttcctttt tccttgatat tgatgaattt
      841 tttactgagc ttttcccttt ttgcatcttc ttctatatcg tctattggtc ttttatcaaa
      901 cgctccttca aattgaatct tgtaaccctt atagagggca gtggccttat caaaaatatt
      961 cttttgttga tacgaagaaa caaaatatat cataggagga ttgggtcttt tctttatttc
     1021 acccatcaat acagaaaata gatgtcctat gttattgtaa gaactttcta cagctatcat
     1081 tgattcatca atgccattat tcaaaagatc attttttacg atattaccta caccggtatc
     1141 tgcagcaact ttgattattg tatcagattt atcgggcttg gacttcatga ttcgatcata
     1201 tattctagta caaaccgcta ttctctccat gatgtgttgc ggcaggtgtt cctttgactc
     1261 taacttaaca aaattacagt atagaacaat tacattccct gaaacgaacc tattttctga
     1321 catggttatt tagaatatcc cgtgggaata aattttttac caacttgatt tctttggaga
     1381 atttaactgt ctttctaatt catccaatct ctgaatcgca tcttggtttt gtctgacttc
     1441 ggagtaggac gcgtcatttc ttattttgtt catcaaatct gccacctctt gagcggtcac
     1501 accatgtttt atatcatatt ctatttgttt tgaacagctt gaaatagtgc tatatttttt
     1561 aaaattccgt ttttcaaatg atgatgcatc gggagaaatt cctttcatat aacgtaaaat
     1621 tactttctca acatgttcaa gatgccaatc tctcatcgca aaattattgg gtttcatggc
     1681 atgtactcag tgatatgtga ataaaggata tttaatctat tatccaaaat aataagagat
     1741 caaaaaataa aatatttgct ttcgctatta tccagactac tcccaactga cgtaatttac
     1801 aaataatctg aaagtttgat tttatcctgt tttggtattt ttgcaatttc aaacctatct
     1861 tttgatttta agagcgtggc ggttgcatca atacccattt ttgtagttat aagattattc
     1921 tgatcactgg agggatctaa acttgatccc tttgaatttg gtattatcag tagatcctta
     1981 tccgcttggc atcttgtgga aattgcatat tcaacttcgg ttggatttgt gggatctatg
     2041 tcatcatcaa ctactattgc aatttttaat gaggggtgac ctgcaaaggc agcaagaatt
     2101 gcgttttttg gttctccttc caatttttta cttatttgaa taatcgcaac aagccagtta
     2161 cttcctccat ctgtcaggtg aacagctctt gtacccgata caacgtcctg cacactgtgg
     2221 aatagtttag attctattgg aagtcccatc aacaatctat gttctccata tccgggtaaa
     2281 atgtcatggt aaataggatc atcagttagg taaatattat ccaattcaaa aataggctgt
     2341 ctacgtttca tgtcataagt tctcagcatt tcaaccattt gttcctctgc tgttttatct
     2401 gcaaggatcc ttccttccaa gagaatctca gagtcctttg gaatataaag actagtacca
     2461 ggagacttta tcattgacaa cctgttatcc atgagtgaat ttgccatctc cagctcattt
     2521 tctccgtagg gcgcttgata agctgccgca acagagacag caggatgagt cccaattata
     2581 atcgaaacag gtaggtcttc tccatgttcc tttgcactag taaagcactt gtgcagatgt
     2641 cttccttcta ccattcttat cgccatactt tttttatcca atctcaataa acgatgagtt
     2701 gatagatttt gatttcctgt ttctttatcc ttggcaataa ccaaagacga tgttatgaaa
     2761 gctcctgaat ctttttcaaa atgcgtcact attggtaagt cgtatagatt ctttgaattt
     2821 ttttgccaat tattgctgtg ggcaatattt gttatttccg atttattcct tatagcctcc
     2881 ttaatccttt cttgtatcat gttttcattc tttgcattta ttgataatgc aattctgtat
     2941 cttgttccca aaacatttgc agccacctta atcttgcttt cacttacaga ttcaaagagt
     3001 acggccttcc ctttatccaa cttgcttact attcctgcaa gttcaaattt tggattgact
     3061 gattttttta tctttactag ttgatctgtt ttctctagtc catttaaaaa atcggtaaat
     3121 ccacgaattt tattgaattc aaatctagtc ctcattgcta atcacttgtt cttgcttcca
     3181 ataattttaa tacttcattc ataatctctt gcatttcact caatgacatt ggattcttat
     3241 tattgaagtt ggttatcact atcccattta tcattaatga tattttctct gacaaagtct
     3301 tcgtgaatat aggatctttt atatttggta ttactctggc actttgagtc ctgttgtttg
     3361 atgccacaga aacatgtatg ccacctattt tgcacaaatc ttcagaaatg gaaacaaagc
     3421 aaccattttt aaactcaatg aattttagta gaaaaactct atttgatttt aagttaattt
     3481 tcttctcaat gaagttccct tggtgggttt cgctcaatgt taactgccct tatttggtac
     3541 aataagatat ctaaatcatt tgatttgttt ctatctatat tttagcaggt atattagtgc
     3601 ggtatattga gatcatattt tgggaaatta atttggtgcg ctgtttgtat cgttgaagat
     3661 tacttagata gttaaataat ctaaaaaata cggccagaac gtaatgcgat tgattttgct
     3721 gatcccacat ctctatttcc acgacaatta gggaggatat ttcgtgaagt accaaattcg
     3781 ttaacgattt ctattcttac cgatctgttt agattcctga tttcttgtgc aatatgattg
     3841 catttagtcc aatccccatt cccaattttc agtatctttt tattcgattt tatacaagag
     3901 agtatattca taataaattt gaccgcatct ttcagagagc tctggactgt actgtacaat
     3961 tctgcatgta gatatagaac ataaattcct atcctgtttc caggatccac tccaacaact
     4021 aatatatcct caaaaaaatt gccactcaag tttttcaata tcattgcctt aaagagaggt
     4081 gggaaagtat ctagctgaaa atcaaatatt agatcctctc ttctaaatat cgctgcttca
     4141 ttcctcgtgg ttatgattat ttttgcgttc gttctggaag cttcttctgg agaaagagaa
     4201 gaaaatctaa tgttcataga ttttagagtg cttacaattt tgtaatacgg tcgaccttcg
     4261 acagttgcta ccacaatttg atttgaattt tgtgccgtcc ctaagggcgt tccattcaat
     4321 tatacttatt tctaattatt attaaatttt ttgagttatg gttcaaaaca tttactacgg
     4381 ttcagtagta taggctttgt ttaatacgga atctactacc aattttacgg atttatcaaa
     4441 tgaaagtttt gtattttctc tcagttttgt aaggttagtt tctgcttctt ccaagatttt
     4501 ttgtgatttt tcttctgctt cttgttttgc agtcgaaatt atcttctctg attctgtctt
     4561 tgcgacttca attatctttt ctctgagttg tgttatttct ttgtctgatg tagatattat
     4621 tctctttttc at
//
LOCUS       DASUMD010000135         9454 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_146867, whole genome shotgun sequence.
ACCESSION   DASUMD010000135 DASUMD010000000
VERSION     DASUMD010000135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 9454)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9454)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9454
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_146867"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            249..575
                     /locus_tag="VFX26_03720"
     CDS             249..575
                     /locus_tag="VFX26_03720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573614.1"
                     /translation="MADERLSQFLKEGKGWERKATSIPGVFLIKLPEYKSRPPYIALE
                     VNPVDTSGIATKRRGILIRSRSELEQISNILTNAKIIQLAASIDEVNPEKKTKPLSTE
                     TDVYEI"
     gene            683..2866
                     /locus_tag="VFX26_03725"
     CDS             683..2866
                     /locus_tag="VFX26_03725"
                     /inference="COORDINATES: protein motif:HMM:NF016724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-related protein"
                     /protein_id="HEX5573615.1"
                     /translation="MNDQTTFINHPLLRKNLLQFREYQKNISSFALNKNTLVILPTAL
                     GKTIISLLVAINTLYNYRDKRILILAPTRPLVNQHWKSFVSYIKLPNDQTAVVTGKIP
                     PYARTIVWNNDAIRLVFSTPEVVRNDIKEKRVSLENFFLIVFDEAHRAVKDYAYTFIA
                     DQYVRHCSFPLILGLTASPGSEKSKIQEICNNLFIEHLEYKTEEDADVKRFINAIDIN
                     WKWFDLPSEYHYVKSILKTMLEEKLNWLISRNIVTKNSKWIFKRDLISLGDELRRTLH
                     TISEEQRRSLYFALMQHSIALSLMYCIELMESQGFNSLGTFLNRTQGEDTKSHKMLIG
                     DNRIKEIRGLIEQLNIEHPKIQYLINVLRERFDYQINSKNTRNLVTGELEKDSRVLIF
                     TQYRDTAQHIVELLLKNKIRSSKFVGQSKRQGDPGMRQEEQNSILKKFREGEFNVLVA
                     TSIAEEGLDIPEVDLVVFYEPIPSEIRHIQRRGRTGRKNIGSVIILATNDTIDERYLE
                     VSRKKIQKMKSVLSSINTQLKLEPVHRVNVKLDPMTKYEIEFLDSCLDGFGERAKRKS
                     QSSIIKKFPIGKIPYSTIDTNLRRLDSLVERTARKIYSVVSIHGNSGLDIELVHKTLE
                     QDDALIDAALKMLEKLEKIKIIGRKAILSENVVKIQGQVFKIEIEKLVMGKAIVLVNG
                     KWQALLHHYDYRGPRELIRKGREFKAIGELYRDKDKLNIRVKQIL"
     gene            complement(2919..3989)
                     /locus_tag="VFX26_03730"
     CDS             complement(2919..3989)
                     /locus_tag="VFX26_03730"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEX5573616.1"
                     /translation="MEVDKIRTLKLLGKWSVNRAIGKRRPLVAVFSLTHYCNFYCPMC
                     PFGDSNKDGQLKLVRERDLTTEQWKSIFDKVSKYCVWSIIEGGEPTSRPDFIDLVRYL
                     HSINMPTSLITNCSLLHTVDLEKLKEYIQFITCSIDSVHEEPYCKVRGVSTKTYDRVM
                     ENIGLLNQSNISHYFNSVITKFNTEEFIDQSYFDKAKELGSNAVSLTFVEDRADVSYS
                     LLPDRKTMTKVCESILDYGRKKSSPQIMIPPEYFEQIIEHGRTTFDECGVWKSTFVNA
                     DGTVMVPCWKFNKPENTYNLLEQSVEEVWSAPQWDIARTCHDCQVLGCIWYSSQPITT
                     FAKNYMNGLSRLINQHKPELLR"
     gene            complement(4084..4548)
                     /locus_tag="VFX26_03735"
     CDS             complement(4084..4548)
                     /locus_tag="VFX26_03735"
                     /inference="COORDINATES: protein motif:HMM:NF024986.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HEX5573617.1"
                     /translation="MSKKVDWLGLLQDSKIKEFNEWRMANIFEKIDLSGIDFSGKNLS
                     NAYLNGIKCNGANLSSCNLQRANFAQSEVMDSNLENADLTDAIFIYGNLKNSKLMNAN
                     LSGTNFMWSDLRNCDLGGCKFKKTVFVEAKLQNAKIDQLKNQSVYLKFAKLD"
     gene            4632..5051
                     /locus_tag="VFX26_03740"
     CDS             4632..5051
                     /locus_tag="VFX26_03740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX5573618.1"
                     /translation="MTESKKINSPPRIMIVDDESDILSVIKRGLESKNDFKVETFSKG
                     DDAINNFQNHPPKYYDLVITDIRMPKVNGFELYRRIKENDPTMKIAFITAFEINKEEF
                     SKVIPSVNVTHFISKPVSISKLREKIKSILEDNNTEA"
     gene            complement(5097..5633)
                     /locus_tag="VFX26_03745"
     CDS             complement(5097..5633)
                     /locus_tag="VFX26_03745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573619.1"
                     /translation="MGESKTSWKFNVSSHYYNDNLVYPQMRVRYWRLGVNDLLNSNYP
                     VEKANHWDIKCLQGEYEHFGVFWFRYGTPFDKELINGICFYYNDIPQEKVQQLLDFLQ
                     QKYGGKGLFRQSRVFLQGSREFNEKNQIANLANEISTKFNGPVEITLEFEKVTQEEQE
                     QNAFNFPEGKALPITGTE"
     gene            5735..6691
                     /locus_tag="VFX26_03750"
     CDS             5735..6691
                     /locus_tag="VFX26_03750"
                     /EC_number="2.5.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyhypusine synthase"
                     /protein_id="HEX5573620.1"
                     /translation="MKPKGTKKLRKNVLNDSVRDYEIESNSISLLIDGMANSGGFESR
                     NLSDGINIIRTMTKDNRCTKFLSFVGSIISTGARGIIKDMLKRKMFDCVITTCGALDH
                     DIARTSTKYYAGDFRMDDSLLYRKNIHRLGNVLVPQNNYGPVIEKKVQDCLNDLYKQG
                     SRSISTFELTKSIGQTLDDTSFLYWAYKNDIPVIVPGIVDGAVGSQIWFFYQKHKDFS
                     VNILLDETRLSDLVYEANKTGAFLIGGGISKHHTLWWNQFRGGLDYAVSITTASEWDG
                     SLSGALVAEAISWGKVKGRAKQTTIHGEATTLLPFIYAALLK"
     gene            complement(6720..>9454)
                     /locus_tag="VFX26_03755"
     CDS             complement(6720..>9454)
                     /locus_tag="VFX26_03755"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF014565.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEX5573621.1"
                     /translation="VLVNVGNYKFNVRHLLIIAVLAIAFSTAFIMRSFPIKYGYYLNE
                     FDPYFDYRATKYIVDNGLEAYLKWHDNMSWYPDGRDIPKTSQVGLHVTAAYLYKIFGG
                     NSSVLDFTIIFPVVIGSLTTIVVFALVRSLGGTTAGLFSALLIAFTPAIIQRGNLGWF
                     KSEPLGLFLGLLALYLLISAMKHKPKIAIVKAIAGGLLLGLANASWGGIQYFSIPISL
                     IFFAVTFLRNDIKVPLIVAIVFTVAAVLAAGVSPRPGLSFVFGLPGIALIGGTIFLIA
                     SSIVRKLSSSNTFIRNNWILIGAFFAIAVGIVLSGSFYVSSFRYLNAINPFLSSQIPL
                     VESVAEHFTPTLVEYFTDYSILIMFAGFGALMAFRRRNDMSIFALIIGITAVYVSATF
                     ARLLVFSSIGIILLAGLGLYEITRTIMNYKAIEPSHKKKRKAEGEKTSQMDRPIKIVY
                     SVIVVILISIPVLDNGVLYPQNSNWLSSADIPPSIANGGTGFRVKTNDWINALNWIST
                     NTSSNSVVTSWWDYGYWITTLGNRTSLADNATINQTRIATIAKMFMDQTDNGLKIAQD
                     LKSDYIVVYIVGQRFSGINGSELYVLGNGGDESKKQWFIRIGGFDENKYLEQDGFTPT
                     PFFWNSTLLGQLIPFTPVSYILNGAPSAEYQPGAMAIYSKDIKYPQNATAQQPLKLVY
                     SSDSFRSNTPGLFFAVLIYEVNHNYVPKTTSDPYNEIVENEEKFSINSSMTNTTMTSN
                     NESKLAVLDTAQGPITMEFFPNVAPIHVSNFEKLAESGFYNGTIFHRIVKGFVIQGGD
                     PNTKNSTNMAAWGTGDPGYKIKAEFSNIPHNRGIVSMARSSDPDSAGSQFFIVLNDSR
                     FLDNQYTVFGRVVNGMDVVDKIAALPTIQNDQPQDPNMAKINSIKIIDRNATTN"
BASE COUNT         3177 a         1656 c         1702 g         2919 t
ORIGIN      
        1 tcaaaaaatc accatgagct tatgacacaa aacaagggct attggagatt tttgaaacct
       61 atttacattt gaatatagac ttatagcttg tagtaatcaa tggtgcatca tgtttgatag
      121 gatttacatc atgctcatgc ataatattaa ctagtattcg ttaattaaca tgcataacat
      181 atcataattt ctagtttgta ctctattgca acgcaggttt taaaaatacc taaatggatt
      241 aataatacat ggcagacgaa agattgtctc aatttttgaa ggaaggtaaa ggatgggaga
      301 gaaaagcaac cagcatacct ggagtgtttt tgattaaact tcccgaatac aagagtagac
      361 ctccatacat agctttggaa gttaatccag ttgacacatc ggggatagca acaaagaggc
      421 gaggaatact gattagatct cgctcggaat tagaacagat aagcaatatt cttactaatg
      481 cgaaaattat ccaactggcc gccagtatag atgaggtaaa tccagaaaaa aagacaaaac
      541 cgttatctac tgaaactgat gtatatgaga tctgaaatat aaaagatgag aattataaaa
      601 atggccaagg ccaacttcga tttgcacaat taatcatttt gactaatact aattcgtata
      661 cgaaaattgt tgatttatgt ctttgaatga tcaaaccaca ttcattaatc atcctcttct
      721 tagaaagaat ttactacaat tcagagaata ccaaaaaaat atttccagtt ttgctctgaa
      781 taagaataca ctagtaattc ttcccactgc attaggaaag acaatcatat cgttacttgt
      841 cgccatcaat acgctgtata attacagaga caagagaatc ctgatattag cacccacgag
      901 accgctcgtc aaccaacatt ggaaatcatt tgtttcatac ataaagttac ccaatgatca
      961 aacggctgta gttactggaa agataccacc gtacgcaaga actattgtgt ggaataacga
     1021 tgcgatcaga cttgttttct cgacaccaga agtagtaaga aacgacataa aagagaagag
     1081 ggtttcacta gagaattttt ttttgatagt ttttgatgaa gcacatcgcg cagtaaagga
     1141 ttatgcatat acgttcatag cagatcaata tgtacggcat tgttcgtttc cattaattct
     1201 tggattaact gctagcccag ggtcagaaaa aagcaagatt caagagattt gtaataattt
     1261 gttcattgaa catttagagt ataagacgga ggaagatgcc gacgtaaaac gattcatcaa
     1321 cgccattgat attaattgga aatggtttga tcttccttca gagtatcact acgtcaaatc
     1381 tatattgaaa acgatgctag aggaaaaact caattggttg attagcagaa atattgttac
     1441 aaaaaattca aaatggatct tcaaaagaga tttaatttct ctaggtgatg aattaaggcg
     1501 gactttacac acaatatcag aagaacaacg acgatcatta tactttgcat tgatgcaaca
     1561 ttccattgcc ctctcactaa tgtattgcat tgaattaatg gaaagtcaag gattcaattc
     1621 tcttggaact tttctgaata gaacgcaggg agaagacact aagagtcaca agatgttgat
     1681 tggtgataat agaataaaag aaattagagg actgatcgaa caactgaata tagagcatcc
     1741 gaaaattcaa tatcttatca acgtcttaag agaaagattt gattatcaaa ttaattcgaa
     1801 aaacactcgt aatttagtta caggcgaatt agaaaaagat tccagagtac ttatctttac
     1861 tcaatatagg gacactgcac aacacatagt tgaattgtta ttaaaaaaca agattaggtc
     1921 atcaaagttt gtagggcaat caaagagaca gggggatcct ggaatgagac aggaagaaca
     1981 gaattccata ttgaaaaaat ttagagaagg tgagtttaat gttttagtgg ccacttctat
     2041 tgcagaagaa gggcttgata tccctgaagt cgatctagtt gtattttatg aaccaatacc
     2101 aagtgaaatt aggcatattc aaagaagagg gagaactgga agaaaaaata ttggttcagt
     2161 aataattctt gcgacaaatg atacgattga tgaacgttat ctcgaggtaa gtagaaaaaa
     2221 aatacaaaaa atgaagtcag ttctttcatc tattaataca caactcaaat tagaaccagt
     2281 tcatagagtg aatgtgaaac tagatcctat gaccaaatat gagattgaat ttcttgattc
     2341 gtgtttggat ggatttggag aaagagcaaa acgaaagtcg caatcatcaa ttatcaaaaa
     2401 gtttccaatc ggcaagattc catattctac tatcgatacc aatctaagaa gacttgacag
     2461 tcttgtagag cgtactgcaa ggaaaatata ttccgtagta tctattcatg gaaacagtgg
     2521 attagatatc gaattggtcc ataaaacatt agaacaagac gatgctctta tagacgcagc
     2581 attaaaaatg ctcgagaaat tggaaaaaat aaaaattatt ggccgaaagg caattctttc
     2641 cgaaaatgtg gtaaaaattc aaggacaagt ctttaagatt gaaattgaaa agctggtaat
     2701 gggtaaagca atagtactgg ttaacggtaa atggcaagct ttgctgcatc actatgatta
     2761 tcgtggtcca agagagttga taagaaaagg acgagaattc aaagctattg gtgaacttta
     2821 tcgggataaa gacaagttga acattcgtgt aaagcaaatt ttgtagatta atttaaagtg
     2881 caaaatttat agttcttaat gggcatctga ttatgcaatc aacgaagcag ttcgggttta
     2941 tgttgattga taagccttga caggccattc atatagtttt tagcaaaagt tgtgatcggt
     3001 tgtgaggaat accatataca tcctagtacc tgacagtcgt gacaagttct agcgatatcc
     3061 cattgaggtg cactccaaac ttcttcaaca ctttgctcaa gcaaattata agtgttctct
     3121 ggtttgttaa atttccaaca tggtaccatt acagtaccat ctgcattaac aaatgtgctt
     3181 ttccatactc cacattcatc gaaagtagta cgcccatgct ctattatctg ttcaaaatat
     3241 tccggcggga tcataatttg gggtgatgat ttttttctac cgtagtccaa aatgctttca
     3301 caaacttttg tcatagtttt tctatccggt aataaagaat atgatacgtc agctctatct
     3361 tcgacaaagg ttaaagaaac tgcgtttgat ccaagctctt tagccttgtc aaaataactt
     3421 tgatcaataa attcttctgt gttaaatttg gtaattacgc tgttgaaata atgagatatg
     3481 ttactttggt taaggagtcc aatgttttcc atgactctgt cgtaggtttt agtagagaca
     3541 ccacgtacct tacaataagg ttcttcatga actgaatcaa tactgcaggt aataaattgg
     3601 atgtattctt ttagtttttc aaggtccacc gtatgtaaaa gagaacagtt tgtaatcaaa
     3661 gaagtaggca tattgatact atgaagatat ctcacaagat caataaaatc tggtcggctt
     3721 gttggttcac caccttcgat aattgaccag acgcaatatt ttgagacttt atcaaaaata
     3781 cttttccact gttcagtagt caagtctctt tctctaacaa gctttaattg cccatcttta
     3841 ttggaatccc cgaaaggaca cataggacaa taaaagttac aataatgggt caaactgaaa
     3901 acagccacta gtggacgtcg tttgcctatg gccctattga ctgaccattt acccagtaac
     3961 tttaatgttc taatcttatc tacttccaac cagtctatct agacatttca ttcgtattaa
     4021 actattgggg ccctcgtgta tatacatgac acacactttt caaaaatgag attctaaaaa
     4081 cacttaatct agctttgcaa attttagata aacagattga ttttttaatt gatctatttt
     4141 tgcattttgc agtttagctt caacaaagac tgtcttttta aatttacatc cccctagatc
     4201 acaatttctt agatctgacc acataaagtt cgttcccgac agatttgcat tcattaactt
     4261 gctatttttc aaatttccgt aaataaaaat tgcatccgtc aaatctgcat tctcaaggtt
     4321 tgaatccata acctcagatt gagcaaaatt agccctttgt aaattgcagc ttgacaagtt
     4381 agccccatta cactttatgc cgtttaggta tgcatttgaa agattctttc cagaaaaatc
     4441 tattccacta agatcaattt tctcaaagat attggccatt ctccattcat taaattcctt
     4501 aattttcgaa tcctgtaaga ggcctaacca gtctactttt ttgctcattt tcaagacatt
     4561 attttttttg atatatcaat tttctcataa tgaaacttat tatatatgat aaccctatca
     4621 aaaatcaaca tatgacggaa agtaaaaaaa ttaattctcc accacgaata atgattgtgg
     4681 acgatgaatc tgatatcctt tcggtcataa aaagaggatt agagtcaaaa aatgatttca
     4741 aggtcgagac attttcaaaa ggtgatgatg ccatcaataa ttttcagaat catcctccaa
     4801 aatattatga tcttgtgatt acggatattc gaatgcctaa agtaaacgga tttgaactgt
     4861 ataggcggat aaaagaaaat gatcctacta tgaagattgc atttattacc gcatttgaaa
     4921 ttaacaagga agaattcagc aaggttattc catctgtcaa tgttactcat tttattagca
     4981 aaccagtcag tatttccaag ttaagagaga aaataaaatc catacttgag gacaataata
     5041 cagaagccta acagatcatc aatctatctc tacctcatga tcatggttgc ctgagtttat
     5101 tctgtacctg tgataggcaa tgcctttcct tcaggaaaat taaatgcgtt ttgttcctgt
     5161 tcttcttgag taaccttttc aaattcaagt gtgatctcta ccggcccatt gaatttggta
     5221 ctaatttcat tggctaaatt ggctatttgg tttttttcat taaattctct agaaccttga
     5281 agaaaaactc gactttgcct aaataatccc tttcctccgt atttttgttg cagaaaatct
     5341 agtaattgtt gaactttttc ttgcggaata tcgttataat agaaacagat accatttatt
     5401 aattccttat caaatggtgt tccatatcta aaccaaaaaa caccaaagtg ttcatactct
     5461 ccctgtagac atttaatgtc ccagtgatta gccttctcca cggggtaatt tgaatttaat
     5521 aggtcattaa ctcctaaacg ccaatatctt acacgcatct gaggatatac caaattatca
     5581 ttataataat gtgacgaaac attgaatttc cacgatgttt ttgattctcc caagtattga
     5641 gtatattata taaaatttag cggcttaacg cagggtactt tcaaactgaa acagaaaaaa
     5701 ataataatat atctggcagc ttaactgtag gaaattgaaa ccaaaaggca caaaaaaatt
     5761 acgaaagaat gttttgaatg attcagtacg tgattacgaa attgaatcca attccatatc
     5821 tttactaatt gatggtatgg caaattctgg cgggtttgaa tctagaaatc tctcggatgg
     5881 tattaatata atccgtacaa tgacaaagga taacagatgt accaaattcc tgtcatttgt
     5941 aggttctatt atctcgacag gagcaagagg aatcataaag gatatgctaa aacgcaagat
     6001 gttcgattgc gtgattacaa cctgtggtgc attagaccat gatattgcaa gaacaagtac
     6061 aaaatactat gcaggggact ttcggatgga tgatagcttg ctctatagga aaaatattca
     6121 tagattggga aatgtactgg taccacagaa taattacgga ccggttattg aaaaaaaggt
     6181 gcaagattgt ctaaacgatc tgtataaaca aggatctcga agtatttcaa cgtttgaatt
     6241 aacaaaaagt ataggacaaa cattagatga tacctcgttc ttgtactggg catacaagaa
     6301 tgacatccca gtcatagtgc ctggcatagt agatggagcc gttggaagtc agatttggtt
     6361 cttttatcag aaacacaagg actttagtgt aaatatatta ttggatgaaa ccaggctatc
     6421 tgacttggtt tatgaagcta acaaaactgg agctttcctt attggaggcg gaatttcaaa
     6481 acatcatacc ctgtggtgga atcaattccg aggaggactg gactatgcag tttctataac
     6541 aacagcttct gagtgggatg gtagtttgag tggggcctta gttgcagaag caatatcttg
     6601 gggaaaagta aagggaagag caaaacaaac tacaatacat ggtgaggcaa ctacattgtt
     6661 accgttcatt tatgctgcct tattgaaata ggatctatca attcactatt ctttcgattt
     6721 cagtttgtgg tcgcatttct atctattatt tttatagaat ttattttggc catatttgga
     6781 tcttgtggtt gatcattctg aattgttggt aatgcagcaa ttttgtcgac aacatccatg
     6841 ccatttacta ctctgccaaa tactgtatat tgattgtcta aaaatctcga gtcattcaac
     6901 acaatgaaga attgtgagcc ggcgctatct ggatctgagg atcttgccat tgaaacgatt
     6961 cctctattgt gcggtatgtt actaaattca gccttaattt tataaccagg gtcacctgtt
     7021 ccccatgctg ccatgtttgt gctatttttt gtatttggat ctcctccttg aattacaaat
     7081 cctttcacaa ttctatggaa tatagtacca ttgtagaatc cagattctgc aagtttctca
     7141 aaatttgaaa catggatggg tgccacattt ggaaagaatt ccatagttat aggaccctga
     7201 gccgtatcta gtacggccaa cttagattca ttatttgatg tcatagtagt attagtcatg
     7261 gaggagttta ttgaaaattt ctcttcattt tcaacaattt cattatatgg atccgatgtg
     7321 gttttaggta catagttatg gttgacttca taaatcaata ctgcgaaaaa tagacccggc
     7381 gtgttactcc taaaactgtc tgaagaatat acaagtttca atggttgttg agcagttgca
     7441 ttttgtggat acttgatgtc ttttgaataa atggccatcg cgcctggttg atattctgct
     7501 gatggggcgc catttagtat atacgagaca ggagtgaaag gtatcaattg acctagtaac
     7561 gtactgttcc agaagaaggg tgtaggagtg aaaccgtctt gttcaaggta cttattttca
     7621 tcaaatcctc ctattctgat aaaccactgt tttttgcttt cgtctccgcc attacctaaa
     7681 acataaagct cactaccatt aatcccacta aatctttgtc cgacaatata tacaacaata
     7741 tagtcagatt ttagatcttg tgcaatttta agaccattat ccgtctgatc cataaacatc
     7801 ttggcaatag ttgcaattcg tgtttggttt attgtagcat tatcagccag actagttcta
     7861 tttcccaatg ttgtaatcca gtaaccgtaa tcccaccaag atgtaactac tgaattggaa
     7921 gatgtattag tagaaatcca gtttaatgca tttatccaat cattcgtttt gaccctaaac
     7981 ccggtaccac catttgctat ggaaggggga atgtctgctg aactcaacca atttgaattt
     8041 tgtgggtaca agacgccatt gtccaggaca ggaattgaaa ttagaataac cactattaca
     8101 gaatatacta tttttattgg tctgtccatt tgagaggttt tttcgccttc cgcctttctc
     8161 ttctttttat gcgaaggttc gattgccttg taattcatta tcgttctggt gatttcgtaa
     8221 agacccaatc ctgccaagag tattattcca atagatgaga atacaagtaa tcgtgcaaaa
     8281 gttgcgctta cgtaaactgc ggtaatgcca attattagag cgaaaattga catatcattt
     8341 cggcgtctga atgccataag tgccccaaat cctgcaaaca ttatcagaat tgaataatca
     8401 gtaaagtatt ctaccaatgt tggagtgaaa tgttcagcaa cggattctac gagaggaatc
     8461 tgagaagata gaaatggatt aatagcgttt agatatctaa atgaggatac atagaaactt
     8521 cccgatagaa caataccaac ggcgatcgcg aaaaaagctc caatcaaaat ccaattgttt
     8581 cttataaaag tattggatga gcttaatttc ctgacaattg atgaagctat caaaaatatt
     8641 gttcctccga tgagagcaat gcccgggagt ccaaatacaa aagatagacc aggtctagga
     8701 gacactccag cagctaacac tgccgcaacc gtaaacacaa tggcgacaat taaggggact
     8761 ttgatatcat ttcgtaggaa ggttactgca aagaagatta atgaaattgg gatactaaag
     8821 tattgaatcc caccccatga tgcattagca agccccagca ataatcctcc tgcaattgct
     8881 tttacaatag ctatcttggg cttgtgtttc attgcagata taagtaagta aagcgccaaa
     8941 agcccgagga acagaccaag aggttcagat ttgaaccaac ccaagtttcc acgttgaata
     9001 atggcaggag taaaggcaat cagtagtgcg gaaaacaatc cagcggtggt tccaccgagt
     9061 gatcttacta atgcaaagac aacaatagtt gttaatgacc ctattacaac cggaaaaatg
     9121 attgtaaaat ctaaaacaga actatttcct ccaaatatct tgtatagata cgccgctgtt
     9181 acgtgtaaac caacttgtga tgtctttggt atgtctcgac cgtcaggata ccaagacatg
     9241 ttgtcatgcc actttagata tgcttcaagc ccattgtcta caatatactt ggttgctcta
     9301 taatcaaaat acggatcaaa ttcattgaga taataaccgt actttattgg aaaagaacgc
     9361 ataatgaaag ctgttgaaaa tgcaatagct agtactgcaa taattaacaa atgacgtaca
     9421 ttaaacttgt aatttccaac attaaccaaa actc
//
LOCUS       DASUMD010000136         2052 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_810601, whole genome shotgun sequence.
ACCESSION   DASUMD010000136 DASUMD010000000
VERSION     DASUMD010000136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2052)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2052)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2052
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_810601"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..473
                     /locus_tag="VFX26_03760"
     CDS             <1..473
                     /locus_tag="VFX26_03760"
                     /inference="COORDINATES: protein motif:HMM:NF014063.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033735 - aspartate dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aspartate dehydrogenase domain-containing
                     protein"
                     /protein_id="HEX5573622.1"
                     /translation="TRILIPTGAIAGLDSIRSVKKYLDSLTITTTKHPKSFVGAPFFK
                     SSRIRLDEITSETVLFEGNAITAIEFFPANVNVAVSIALAGIGLEKTRVKIIADPLIS
                     VNKHEIVGKGSFGGIHIVVENIPSPTNPKTSYLASLSAIECLRSLCNENFRIGT"
     gene            513..824
                     /locus_tag="VFX26_03765"
     CDS             513..824
                     /locus_tag="VFX26_03765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAM domain-containing protein"
                     /protein_id="HEX5573623.1"
                     /translation="MTRLTMSYNGFKTNDMFGPKPVEVGKEYDVQITELSRKGDGIAR
                     IQRFVIFVKNGKVGQNTKIKIIQVGNRFATAEIVSDSESQSQTESAPANADANTETPT
                     E"
     gene            899..1327
                     /locus_tag="VFX26_03770"
     CDS             899..1327
                     /locus_tag="VFX26_03770"
                     /inference="COORDINATES: protein motif:HMM:NF024864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupredoxin domain-containing protein"
                     /protein_id="HEX5573624.1"
                     /translation="MSSIILSITISNLKISLKNNIIAIIAISFIIVGSLWAIGNLVSQ
                     DNTQLSMNEGIIMLMKDNKFNVTNPDITVKINQPLKISIANQDFRKHDFIVDDLNINT
                     GFISSGQDFTTVIASDKVGSFRYYCSIHPGIMEGKIIVTN"
     gene            1774..1932
                     /locus_tag="VFX26_03775"
     CDS             1774..1932
                     /locus_tag="VFX26_03775"
                     /inference="COORDINATES: protein motif:HMM:NF002316.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L39e"
                     /protein_id="HEX5573625.1"
                     /translation="MAARKNTSRKKRLIKRVKQNRPVPAWVIIRTHRHVRTNPKRRAW
                     RRSDVNVG"
BASE COUNT          745 a          300 c          382 g          625 t
ORIGIN      
        1 atacaagaat attgatacct actggtgcta tcgctggact ggattccatt agaagtgtaa
       61 aaaaatatct ggatagtttg actattacaa caacaaagca tcccaaatca tttgtaggtg
      121 ctccattttt caagagctca agaattaggt tagatgagat tactagtgaa acagtccttt
      181 ttgaaggtaa tgctattaca gctattgaat tttttcctgc aaatgtgaat gtagcagttt
      241 caatcgcact tgctggaatt ggtttagaga aaactcgcgt aaagataata gcagacccac
      301 tgatatcggt aaataaacat gaaatagtag gtaaagggag ctttggagga atacatattg
      361 tagtcgaaaa cattccaagt cctacaaatc ctaaaaccag ttacttggca tctctatctg
      421 ccattgaatg tctgagaagc ttgtgcaacg aaaatttcag aatagggact tgatatggac
      481 aaattttgac agtttatatg gggaatattt atttgacaag attaactatg agttacaacg
      541 gatttaagac aaacgacatg tttggtccaa aaccagtgga agtaggaaag gaatatgacg
      601 tgcagatcac ggaattaagt agaaagggag atggaatagc aaggatacag cgatttgtaa
      661 ttttcgtaaa gaatggaaag gtaggtcaaa atacaaaaat aaagataatt caggttggaa
      721 atagatttgc aactgcagag attgtcagtg attctgaaag tcaaagtcag actgaaagcg
      781 caccggcaaa tgctgatgcc aatacagaaa cccccacaga atagtcaacc tgccgcagtt
      841 acttttgaaa cttctaatta ttttatatct ttacaaaaat taattttaaa aagtatgttt
      901 gtcaagtatt attttatcaa ttacaatttc taacttaaaa attagtttga agaataacat
      961 tatagctatc attgcaatct cgttcatcat tgttggttca ttatgggcaa ttgggaattt
     1021 agtatctcaa gataataccc aattatcaat gaatgagggt atcattatgt taatgaaaga
     1081 taacaaattt aatgttacta atccagatat tactgtcaaa atcaatcagc cattaaaaat
     1141 tagtattgca aatcaggatt ttagaaaaca tgattttatt gtagatgatc ttaatattaa
     1201 taccggtttt atttcaagtg gtcaagattt taccacagtt attgcttctg acaaagtagg
     1261 ttcttttaga tattattgct caattcatcc tggaatcatg gaaggtaaaa ttatagtcac
     1321 caattaatga aaatattttt tctggtctgc tatcattaga aaaataccga aatgaaatga
     1381 tttaagaaaa aatctaattc ggacagttac gttaagtctt gaatgaatcg gttagttttt
     1441 tatgatatat gcttttgcaa ccatctctat gaaccatctg gtccgacagt aatcgaagtt
     1501 gcttcatttt tcttttatcg tatatggtac tcaagaattt gtagcacata gaacagacaa
     1561 attctgtctc catttgcttc atatttttca tgtttgggaa ttaatcttta atcttttggt
     1621 tgtgttgagg tatagcattg agatactaga tattcgaatc aactatttac aggagttata
     1681 atcatagaga aaatgaattc ctatttcttg ccgattcctg aaactaaaaa ataaaccaac
     1741 acttaaaata ggcaaaaaac tcagtgtaga aaaatggctg cacgaaagaa tacatcgaga
     1801 aaaaagagac tgataaagag ggttaaacag aacagaccag tgccagcctg ggtaataatt
     1861 aggacccatc gtcatgttag aacaaatcca aagcgaagag cttggagaag gtcggatgtt
     1921 aacgtaggat agtagttagg caatgattga aaatgtctga agaaaataca acaagaatat
     1981 acacggtgaa tttagcaaag gcctgggaca ctccaaagta tagaagaacg gatagagtta
     2041 ttaacatcat aa
//
LOCUS       DASUMD010000137         4178 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_37980, whole genome shotgun sequence.
ACCESSION   DASUMD010000137 DASUMD010000000
VERSION     DASUMD010000137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4178)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4178)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4178
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37980"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..542)
                     /locus_tag="VFX26_03780"
     CDS             complement(<1..542)
                     /locus_tag="VFX26_03780"
                     /inference="COORDINATES: protein motif:HMM:NF012861.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005247 - voltage-gated chloride channel
                     activity [Evidence IEA];
                     GO_process: GO:0006821 - chloride transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HEX5573626.1"
                     /translation="MKWNLDFSYFRKWILIGFLLGIVAGLSAIGLFLSVEFFTGLFLQ
                     LGTGYSPPLPGGFQNGYQSYTLIIERPWLLPLICGLGGLLVGLITTRFSPESEGHGTD
                     AVIDAYHYKSGNIRARVPLVKAVASSITIGSGGSGGTEGPAGQIAAGLGSVIGKLFKL
                     NEDERRIAVAAGLGAGIGSI"
     gene            1062..1469
                     /locus_tag="VFX26_03785"
     CDS             1062..1469
                     /locus_tag="VFX26_03785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573627.1"
                     /translation="MGPSQDDKREMTSNSTDILNLIDSFIDQISKIRTILKGVSISAL
                     ILAPLAIALSVFLLTHSSFFTILENQDDFGLVLIILLGSVISISTVWIVAGLRQYRMI
                     SEWNKRYTSYLTNKEQIRKNIESELGFTEDYED"
     gene            complement(1477..1818)
                     /locus_tag="VFX26_03790"
     CDS             complement(1477..1818)
                     /locus_tag="VFX26_03790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573628.1"
                     /translation="MSSSQSHRDRIYIVRDIIMKLVEYGQLNQTALVSYCGLNLKKHR
                     NIFDKMELNGLIIKTEKGLGKRTVTVYSASQKGLEFCRTIIEPYEKLFPRSPDSNGNN
                     TNSLVDPHEYD"
     gene            complement(1923..2141)
                     /locus_tag="VFX26_03795"
     CDS             complement(1923..2141)
                     /locus_tag="VFX26_03795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573629.1"
                     /translation="MIAKTCKSNTATGKVIYTLENPDSITYLGKKDILLNQLMACEKL
                     INYAKDNNDLELIQAEINELRLMLDLVT"
     gene            complement(2466..3329)
                     /locus_tag="VFX26_03800"
     CDS             complement(2466..3329)
                     /locus_tag="VFX26_03800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA ester lyase"
                     /protein_id="HEX5573630.1"
                     /translation="MFRSLLFIPGNNERFLKKSISLKPDILCFDLEDSVPSNDKELAR
                     NLVAGHVATHDEDKEPSIYVRINSVDSGLVDGDLDRVLVKGLDGIVLPKISNSQEVIQ
                     IIDKIEMIVSKRSISARIRIIPSIETAKGVINANSIASAHENVVALVFGVFDYLYDMN
                     IDVEYDDHPSYNYARSKIPVDAKAAGIEAMDGIWQEVNDLDGLIKDATNAKKLGYSGK
                     TLIHPLHINPVHDIFRPTKKQIEWAEKVLAALQDSFEKGNTRGAVLLDGKMIDAVHYK
                     QAKAVINAAKQ"
     gene            complement(3351..>4178)
                     /locus_tag="VFX26_03805"
     CDS             complement(3351..>4178)
                     /locus_tag="VFX26_03805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HEX5573631.1"
                     /translation="EEVTKLKVGDRVVSHSNMSCRVCDKCTSGREYDCDERLIWGFQT
                     GPLWGGFCQYTHLPEVNVAKIPDSVSFEQAAAVSMVGMTAWHMLVGRAKIRPGQTVLV
                     MGGTSGVGMAGVQIAKLYGCDVIATAGNKEKMDKCMELGADQVVNHREPDWYKKVREI
                     TKKQGVDVVFEHIGKSTFPQEVGLLKMGGTLVATGATTGYDSTIDLRYLFFKGTNLLG
                     STQGNKAELEQVIHWTAMGKIKPLISTVLPFSDMAKGHTMMANAEQIGKIVTTPQKL"
BASE COUNT         1267 a          858 c          651 g         1402 t
ORIGIN      
        1 aatatacttc ctatgccagc tccaaggcca gcggcaacag caattcttcg ttcatcctca
       61 ttcaatttga atagctttcc tataactgat ccaaggccag cagcaatctg tcctgcggga
      121 ccctcagttc ctccacttcc gccgcttcca atagttatgg atgaagcaac agcctttaca
      181 agaggaaccc gcgctctgat attaccactt ttgtaatgat aagcatcaat tactgcatcg
      241 gtaccatgcc cctcagattc cggcgagaac ctagttgtaa tcaaaccaac taacaggcct
      301 ccaagaccac atatcaaagg gagtaaccaa ggtctctcaa taattagagt gtaactttga
      361 taaccgttct ggaaaccccc cggtaaagga ggagagtagc ctgttcctaa ttgaagaaat
      421 agacctgtaa aaaattccac ggaaagaaaa agccctattg cactaagacc cgcaacgata
      481 cctaatagaa atcctataag tatccacttt ctaaaatagc taaaatctag attccatttc
      541 atattccttg ttgttcttat taatgatact atttgagaat aataaggaat atcagttctc
      601 acacagctaa acctggtata cagttgattt ttcttggttt ataactgtta taccctacaa
      661 atcaagtata ctagattttt ttccagattt ttttcacatg attttttagt tgtgaattaa
      721 agcgtataac cgcagtataa cttcatttaa gcctttattt tcattgaact atgttacctc
      781 aacttaatta agtaaatcat tgaactagaa agtaaaaatg gatctcagcc cgcagaattt
      841 catatgggac tatttcacag tttatattct aagattatca tatcaattag aattcataaa
      901 tgtattaaga attatctatc gattaagtgt ttaccaaata aataaatgtg atgctcatat
      961 catttggagt gaacaaatga taaaatctct aagcaaggat attcgtaact ttcaacatcc
     1021 taaccagaat ctaaataaca gagtttacag tagcgttaac tatgggacca tctcaagatg
     1081 ataaaagaga aatgacatca aatagtactg acattttaaa tctcatagac agttttattg
     1141 atcagatatc aaaaattagg accatcctta agggtgtctc tatctcagct ctaatactgg
     1201 caccgcttgc aatagctctc tctgttttct tgttaaccca ttcatcattc tttaccattc
     1261 ttgagaatca ggatgatttt gggctcgtgt tgataatatt actcggatca gtaatttcta
     1321 tctctactgt ttggattgtt gctgggttgc ggcaatatcg gatgattagt gaatggaata
     1381 aaaggtatac cagctatttg actaataagg aacaaattcg caagaatatt gaatcagaat
     1441 tgggtttcac agaagactat gaagattaac ccctaatcag tcatactcat gtgggtctac
     1501 taagctatta gtattatttc cattactatc aggggatctt ggaaaaagtt tttcataagg
     1561 ttctatgata gttctgcaaa attccaagcc cttctggcta gcactataaa cagttaccgt
     1621 cctttttcct aaaccttttt ctgtcttaat aatcagtcca ttgagctcca ttttgtcaaa
     1681 aatatttctg tgcttcttca agtttagccc acaataacta actaaggctg tctggttaag
     1741 ttggccatat tcaacaagtt tcatgattat gtctcgaacg atgtaaattc tgtctctatg
     1801 tgattgcgaa ctggacacta agttagattg ggggtactca gtatatagat tatattctga
     1861 gaacatgact ttcgctataa ctaaaatcca tattagtagg aaaaatgatt ggtaattgta
     1921 atctaggtta caagatccaa catcagcctt aattcattta tttctgcctg gattaattct
     1981 aagtcattgt tatcctttgc ataattaatt aacttctcgc atgccatcaa ttgattcaat
     2041 aaaatatctt tcttacccag ataagtaatt gaatccggat tttccaaggt ataaataacc
     2101 tttccagttg cagtattgga tttacaagtc tttgcaatca tcaaacattc atatgaattg
     2161 atcaatttta taacaccttt gctcagaatt tgatttgcct ctgtccttat tttttctaaa
     2221 tatcatgaac aatcatgtgt aacatgcatt aataaacgtc gattaacctt gttaaccttg
     2281 gatagtggaa tattgaatgt tgtattttca tatatttttt gatgtctttt tattatttta
     2341 tttagcgagt atttgtgagt ggcacgtaag atcctaacca ttagcagata taggaaaaga
     2401 caaatatccg gatagtttta ataaaggatt cgttaaatag gaacactatt cattttcgta
     2461 atactttatt gttttgcagc gtttattaca gccttcgctt gtttgtaatg aacagcatca
     2521 atcattttac catccaatag tactgcgcct ctagtattcc ccttttcaaa tgaatcctgt
     2581 aatgcagcta atactttttc tgcccattct atttgtttct ttgttggtct gaaaatatcg
     2641 tgaacgggat ttatgtgtaa aggatgaatc aacgttttac ctgaataacc tagttttttt
     2701 gcatttgttg catctttaat caaaccatca agatcattta cctcttgcca tataccatcc
     2761 attgcttcaa ttcccgcagc tttggcatcc actggaatct ttgatcgggc ataattatag
     2821 cttggatgat catcatattc gacatcaata ttcatatcat acaagtaatc aaagacccca
     2881 aagaccaatg ccaccacatt ttcatgtgct gaagcaatcg aattagcatt tattactcct
     2941 ttagctgttt ctatagatgg tatgattcga attcttgcgg aaatgctacg ttttgacaca
     3001 atcatttcaa ttttgtcaat aatttgaatt acctcttgac tattactaat ctttggtaaa
     3061 acaataccat ccaatccctt cactaagact cgatcaagat caccgtcaac taaaccagaa
     3121 tccactgaat taattctgac atagatggat ggttccttat cttcatcatg ggttgcaacg
     3181 tgtcctgcga ccaaatttct tgcaagttct ttgtcattag atggcacaga gtcttccaga
     3241 tcaaaacaca gtatatctgg tttaagacta atagactttt ttaaaaatct ctcgttgttt
     3301 ccaggaataa ataataaact cctgaacatt tagtcacaaa aaataaaaaa ttaaagcttc
     3361 tgaggtgttg tcacaatctt gcctatctgt tctgcgtttg ccatcatggt gtgtcctttt
     3421 gccatatcgg agaatggaag aactgtacta atcaatggct taattttacc catggctgtc
     3481 cagtgaatta cttgctccag ttcagcttta ttaccctgag ttgaaccaag tagattggtc
     3541 cctttaaaga ataggtatct tagatcgata gtagaatcat atccagtcgt agctcccgta
     3601 gctactaatg ttcctcccat cttaaggaga cctacttcct gtgggaatgt tgattttcca
     3661 atatgttcaa agacaacatc tactccttgc tttttcgtta tctcccttac tttcttatac
     3721 caatcgggtt ctctgtgatt tacaacttga tcagcaccaa gttccataca tttgtccatc
     3781 ttttccttgt ttcctgcagt tgcaatgaca tcacaaccat atagtttggc tatttgaaca
     3841 cctgccattc cgacaccgct tgtccctccc atgacaagaa ctgtttgtcc gggtcttatc
     3901 ttggcccttc ctacaagcat atgccaggct gtcatcccaa ccattgacac tgcggctgct
     3961 tgctcaaatg aaacagaatc gggtatcttt gcaacattta cttcaggtaa atgagtatat
     4021 tgacagaaac caccccaaag tggaccagtt tgaaaacccc aaatgagacg ttcatcacag
     4081 tcatattctc ttcccgacgt acacttatcg cataccctac agctcatgtt agaatgagaa
     4141 accactctat caccaacttt caattttgta acttcctc
//
LOCUS       DASUMD010000138         8479 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_260079, whole genome shotgun sequence.
ACCESSION   DASUMD010000138 DASUMD010000000
VERSION     DASUMD010000138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 8479)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8479)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8479
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_260079"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..439
                     /locus_tag="VFX26_03810"
     CDS             <1..439
                     /locus_tag="VFX26_03810"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX5573632.1"
                     /translation="IQKGNTLLNSSKYEEALVTFDQALKIDSSSVDALNGKGLIFNQL
                     GKYEEAITWFDKALSIDPNFVNALNNKGVTLANLGKYEEAITWFDKALSIDPNFVDAL
                     YNKADALGELGKYEEAIVWTDKALALEPINQNDTNSNLLLPNE"
     gene            complement(527..1078)
                     /locus_tag="VFX26_03815"
     CDS             complement(527..1078)
                     /locus_tag="VFX26_03815"
                     /inference="COORDINATES: protein motif:HMM:NF012774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HEX5573633.1"
                     /translation="MFAISFAVISQSLVSVHASTSSWLDPSIQDLNLNDNQLTYGIQT
                     SVSNSNDQNQNKSSDIELEGIVTKVVDGDTLDINGTRIRLALVDTPERGQPGFDQAKE
                     YVESICLGKTGELDADSGQRRGDRYGREVGVVYCDGVNTNEKLMTGKLARILVEFCDI
                     SEFSNENWTITQCQDSFESSNRR"
     gene            complement(1278..2204)
                     /locus_tag="VFX26_03820"
     CDS             complement(1278..2204)
                     /locus_tag="VFX26_03820"
                     /inference="COORDINATES: protein motif:HMM:NF024660.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PHP-associated domain-containing protein"
                     /protein_id="HEX5573634.1"
                     /translation="MAEVLRVETHCHNVFSNHNNYLSRLPFDCGVTLEEQLENAALQK
                     IDVMFVTNHNTLDGYSQILEYKQNHEKYQNLRIYPAEEITINNKGHVLAYGIENEIRP
                     GMTLDETLDEIRKQNGISCAAHPFAVSNGIREEARKCDIIESFNSNNIDIFSNLIAER
                     FTKQNNLKSIVGSDSHVKSTIGRSINTVESEDNIDSILESLAKGRFKIGKFNYTSKEE
                     MYEHAHYIISSSRQTILNSINETNPKFHSLVKWAIDSFISNPNSRLWHLMSSIGMYLS
                     KRVSKKVNIYGYNPVIFEERSWSNLISLSLIP"
     gene            complement(2427..3473)
                     /locus_tag="VFX26_03825"
     CDS             complement(2427..3473)
                     /locus_tag="VFX26_03825"
                     /inference="COORDINATES: protein motif:HMM:NF014010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoU domain-containing protein"
                     /protein_id="HEX5573635.1"
                     /translation="MQAFENNEVRKIQYTGRSTYVLSLPKKWVNELKLKAGDPVTIMR
                     EANNSLSIVPNVVRGPSTFEATSFVTSDKSGPTLKRTVVSMYLRGFNVMHLRSKTGTI
                     HPSQRDAIREVVRRNLIGTEIIADSSDMVTIQVLLSLPELSINTAVRRMFLIGSSMHK
                     DSISTLSGDSQELYKTVIKSDDEVDRFSLYVLRNLVIASQNESTLKAIGLKSPADCLS
                     YSAAVRSLERIADHASEIAIKSSLIGTVPDELRKRIVKMSDLSLQLLSDAIEAFLRKD
                     YYLADSIVDKSENIRSIEDDIITLIDKDKNPRNYNNIYVKLILEHIRRTAEYSFDIAE
                     AAMNQIVGEVIEIR"
     gene            complement(3561..4157)
                     /locus_tag="VFX26_03830"
     CDS             complement(3561..4157)
                     /locus_tag="VFX26_03830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate uptake regulator PhoU"
                     /protein_id="HEX5573636.1"
                     /translation="MDMGHLSEDLVNSALESYDKGTMMRAQIFEGSEKLRFLQIEVTD
                     FATELIARYQPVAKDLRFIQSSMDAAYGFSRFGRYAYDIAEVLETIGPLRNCDKSQVS
                     QMARTAKDMIKLSVKSLEKLDKNASQKLYMMDDSVDSIFRNHLKKVLTQTKKRNFEPR
                     CYVSALLILRYLERISDHACYIGDSVHYVVTGDPSPRR"
     gene            complement(4225..5034)
                     /gene="pstB"
                     /locus_tag="VFX26_03835"
     CDS             complement(4225..5034)
                     /gene="pstB"
                     /locus_tag="VFX26_03835"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HEX5573637.1"
                     /translation="MAIEEPIETKETVVQATEKFKVRIENVNGWYGTKRVLKNINLNV
                     KEKTVTAFIGPSGCGKTTLIRCLNRMHEMTPGARAEGRVVVDGIDIYDKSIDPVIIRR
                     RIGMVFQKPNPFPTMSIFDNVAAGLKLNGMTNKTIIREIVEESLRNAGLWDEVKNQLE
                     QPGMSLSGGQQQRLCIARALAMQPEVLLMDEPTSSLDPHGSSKIEELVRVLKDSVTII
                     IVTHNMQQAGRVSDFTAFMYLGDLIEYGATSQIFMKPEKELTERYISGKFG"
     gene            complement(5101..6003)
                     /gene="pstA"
                     /locus_tag="VFX26_03840"
     CDS             complement(5101..6003)
                     /gene="pstA"
                     /locus_tag="VFX26_03840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HEX5573638.1"
                     /translation="MTMNSNKNYRQIVLETVNKKYRKRLLVDKLVTIFTIVCVIAAIV
                     PLASILLEVIKNGISAISFEFLTQTQGSIGSGSGGIAPAIQGTIIVVGLAAAIATPVG
                     VLTGIYLSEFAKEGAFSNAVRFFNDVLTGLPSIVVGIVGYVVIVLAIGSFSVLAGALS
                     LSIIMMPIVVRVTEETLKVVPYSLREAGHSLGLSKAKITLFIVLPTAKDGILTGIVIA
                     ISRIAGETAPLIMTILGTSLFFTGITGPVDALPLRIWRLASQPYESAHAFGWGSALIL
                     ILMILALSMGLRLLLQKRSFKAPT"
     gene            complement(6000..6941)
                     /gene="pstC"
                     /locus_tag="VFX26_03845"
     CDS             complement(6000..6941)
                     /gene="pstC"
                     /locus_tag="VFX26_03845"
                     /inference="COORDINATES: protein motif:HMM:TIGR02138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HEX5573639.1"
                     /translation="MVRNKGHDKIFKGLVVGAAAYTLLIVGLVAFSVGKGSADIFLAE
                     GINFVTQSNWDVGRESFGALPYIIGTLLSSAIAMVIGVPISLAIAIFISEIAPPRIGT
                     PLAFVSELLAAVPSIIYGLWALFVFRFWVRDLIEKPIYDAFGGYLPFFAKTPFGLDIF
                     TAGIVLAIMIIPIISSICREVMKVVPDSQREAAYSLGATRWETVRMAVFPYVKSGLVG
                     ASMLGLGRAVGETILVTMIIGNVIGPSAIPTSFFSQGQTLASLVANEFNEASSDLHLS
                     ALIALGAILLILTMAINIGARLLVKKKIKVQSGAKSQ"
     gene            complement(7158..8246)
                     /gene="pstS"
                     /locus_tag="VFX26_03850"
     CDS             complement(7158..8246)
                     /gene="pstS"
                     /locus_tag="VFX26_03850"
                     /inference="COORDINATES: protein motif:HMM:TIGR00975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009897 - external side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0042301 - phosphate ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HEX5573640.1"
                     /translation="MLISKILIGISAAILLATSTIMPSAVYAQGAVTINGAGATFPFP
                     LIDTWRVEYQKVKPDVNINYQSIGSGGGVKQFTEKTVDFGATDAPLTQNESQKAPGAV
                     HIPETIGSVVAAYNLPGIPDKGLKLTGEVLADIFLGKITKWNDPKIQSLNTDKTLPGD
                     DIVVVHRSDGSGTTFVWTDYLSSASPAWKDQLGKGKSVEWPVGIGAPGNEGVANAIKG
                     TPNTIGYIELSYALTTNTPFAFIQNKEGNFVEPSLNSTMAAVESYVATLPKGDGVWTD
                     VTLVNAAGADSYPIASFSYLLLNKELSTNPNLDQAKAKALVDFISWAITDGQKMAESL
                     DYVPLPDGVVKLDQDTLKSLTFNGQPIT"
BASE COUNT         2507 a         1686 c         1485 g         2801 t
ORIGIN      
        1 aattcaaaaa ggcaacacac tgttaaattc ctcaaaatat gaagaggcac ttgtaacttt
       61 cgaccaagca ctaaaaattg attctagctc tgttgatgct ctaaacggta aagggttgat
      121 attcaatcaa cttggcaaat atgaagaggc aattacctgg tttgacaagg cattaagcat
      181 tgatcctaat tttgtaaacg cattgaataa caagggagta acattggcta atcttggtaa
      241 atatgaagag gcaattacct ggtttgacaa ggcattgagc attgatccta attttgtaga
      301 cgcactgtac aataaagctg atgcactggg tgaactaggt aaatatgaag aagccattgt
      361 gtggacggac aaggctttgg ctcttgagcc gatcaatcaa aatgatacaa actcaaatct
      421 gttacttcca aacgaatgaa agtttaagaa tcttatattc agcatgtaag acaaatgaac
      481 atcatatatc ccatattgga aaaatgattt tagaaaaagt tagtaattat cgacgatttg
      541 atgactcgaa gctgtcttgg cattgagtta tggtccaatt ttcgttagaa aattccgaaa
      601 tatcacaaaa ctcaactaga attctcgcca atttacctgt catgagtttt tcattcgtat
      661 tgacaccatc gcagtaaaca acaccgactt ctctcccata cctgtctcct ctcctttgac
      721 cgctatctgc atccaactct cctgtctttc caagacatat agattcaaca tattcttttg
      781 cctggtcaaa tcccggttgt cctctctcag gtgtatcaac cagagctaat ctaatcctgg
      841 ttccattgat atctaatgtg tctccatcta ccacctttgt tacgattcct tctagctcaa
      901 tgtcactact tttattttga ttctggtcat tggaattgga aacagaagtt tgaatcccat
      961 atgtaagctg attgtcattc agattcaaat cctgtatgct cggatctagc caagacgatg
     1021 tacttgcgtg aactgataca agtgattgac ttatcacagc gaaagaaata gcgaacatgc
     1081 aacatgaaaa gccaattcta tgtatgtagt tcaagacaat agtcaatgat ttgtataatt
     1141 aatttacttt gctagtacat tcatggatta ggtggttcta tcttgattca cttttttgca
     1201 attaaaatca gttaattact acttagaaac aaacaatttg aaaccattga atagaaacga
     1261 acggttaact tgctagatta cggaattaaa ctcaacgata tgagattgga ccatgatctt
     1321 tcttcaaaaa ttactgggtt gtatccataa atgttcactt tttttgacac acgttttgac
     1381 aaatacatac caatcgaact cattaaatgc cataacctgg aatttggatt tgaaataaaa
     1441 gaatctattg cccatttgac taatgaatgg aattttggat tcgtttcgtt tattgagttt
     1501 aatatagttt gacgagatga agagataata taatgagcgt gttcatacat ttcctctttg
     1561 cttgtgtagt taaactttcc aatcttgaac ctaccttttg ccaaactctc taaaatagaa
     1621 tcaatattat cttctgattc tactgtattg atgcttctgc caatagttga ttttacatga
     1681 gaatcactac cgactattga tttcaggtta ttttgtttgg taaatctttc tgcaattaga
     1741 tttgaaaaga tatcaatgtt attgctgtta aatgattcaa ttatatcgca ttttcttgct
     1801 tcttctctta taccatttga aactgcaaag ggatgagcag cacaagatat gccattttgt
     1861 tttcttattt catcaagagt ctcatccagc gtcatacccg gccttatctc attttctata
     1921 ccataagcca acacatgacc cttattgtta atcgttattt cttcagcagg atagattctt
     1981 aaattctgat atttttcatg attctgttta tattctagaa tttgggagta accatcaagt
     2041 gtattatggt ttgtaacaaa cattacatca attttctgaa gagctgcatt ttctaattgt
     2101 tcttccaagg tgaccccaca gtcaaatggt aatcttgaaa ggtaattatt gtgatttgaa
     2161 aaaacgttat gacaatgggt ttcaaccctt agaacttctg ccataccttc cttaaaatat
     2221 tcgaaggtgt ttgcctaata tatactgagg gcttgtctcc tgtttctaaa taaagatcat
     2281 tgataataaa tcaactaatt atttgaactt atttttaaat ttctgaaatt gcttgaaaga
     2341 aattagaaaa ttatttgcta tatccatgat aattctttat taatcattat aatttacctg
     2401 acttgcatca actcagatta gagattctat ctaatttcta taacttcgcc tactatctgg
     2461 ttcattgcag cttcggcgat gtcaaatgaa tattctgcag ttcttcttat gtgctcaaga
     2521 atcagtttga catagatatt gttgtaattc cttggattct tatccttatc gattagtgtt
     2581 ataatgtcat cttcaattga tctaatgttt tcagatttat ccactatact gtcggccaag
     2641 taataatcct ttctaagaaa cgcttcaatt gcatcgctta gaagttgcag tgataaatca
     2701 ctcattttta caattctctt tcttaattca tcaggaactg ttcctatcag tgaactcttt
     2761 atggcaattt cagaagcatg gtctgctatt ctttcaagac tccttactgc tgcactataa
     2821 ctaagacaat ctgcggggct tttcagacct attgccttta aagtgctttc attctgagaa
     2881 gcaatgacaa ggtttcgaag tacgtagagg ctgaatctat caacttcgtc atctgatttt
     2941 attaccgtct tgtacaattc ctggctatct cccgacagcg tagaaattga atctttgtgc
     3001 attgacgaac ctattagaaa cattctcctt actgctgtgt taatagataa ttccggaagg
     3061 ctcaacaata cttgaattgt taccatgtca gatgaatcag caattatttc agttccaata
     3121 agattcctgc gaacaacttc tctgattgca tctctctgtg aaggatgaat tgttcctgtt
     3181 tttgatctta aatgcattac attaaacccc cttaaataca tggatactac ggtacgcttc
     3241 aacgtaggac cactcttatc actggtaaca aaagaagtag cctcaaaagt actaggaccc
     3301 cttacaacat tggggactat agaaagtgaa ttattggctt ccctcattat agtaacagga
     3361 tcaccagcct tgagctttaa ttcattgacc cacttttttg gaagagagag cacgtaggta
     3421 gatctaccag tatactggat ctttcttact tcattatttt caaatgcttg caatatagat
     3481 atttagatat cagtagaata tgggtgttgt gattagtgat ctgtagttta catatagata
     3541 tacatgttct atatagttat ttaacgcctc gggctagggt cgcccgtaac tacgtagtga
     3601 acactatccc cgatgtagca agcgtgatct gaaattcttt ctaggtatcg tagtatcaac
     3661 agtgcagaga cgtagcacct tggttcaaaa tttcttttct tggtttgagt caaaactttc
     3721 tttagatgat ttcgaaaaat tgaatctaca ctatcatcca tcatgtatag tttttgtgag
     3781 gcatttttgt cgagcttttc tagtgatttt acgcttagtt ttatcatgtc tttcgcagtc
     3841 cttgccattt gagaaacttg ggacttgtca cagttacgaa gcggccctat cgtctctagt
     3901 acttctgcaa tgtcgtaggc atacctacca aatcttgaaa aaccatatgc tgcatccatg
     3961 gatgactgta tgaatctgag atctttggca actggttgat atcttgcaat cagttcagtt
     4021 gcaaaatcag taacttcgat ttgtaggaat ctaagttttt cagatccttc aaaaatctgc
     4081 gcacgcatca tggtaccctt atcatacgat tctaatgctg aattaaccaa atcttcagag
     4141 agatggccca tatccatgat gaggtttgtt atgcgttcaa gtccaatatc taataatcgc
     4201 gccaacttga caaactaaat taagctaacc aaactttcct gaaatgtagc gctctgtaag
     4261 ttccttttcg ggtttcatga atatttgact tgttgctcca tattctatta agtcgcccag
     4321 gtacataaat gcagtgaagt cggatactct accggcctgt tgcatattat gagttacaat
     4381 tattatcgta acactatctt ttagtactct aacaagctct tctatttttg acgaaccatg
     4441 tggatctaat gatgatgttg gttcgtccat tagtaacacc tctggctgca ttgcaagcgc
     4501 tcttgcaata caaagtctct gttgctgtcc gccagatagg ctcattcctg gttgttcaag
     4561 ctggtttttt acttcatccc ataaccctgc attccttaaa ctttcttcta caatttctct
     4621 aattatggtt ttattagtca tgccattgag ctttaagcct gctgctacat tatcaaagat
     4681 actcattgta gggaaaggat ttggtttctg gaaaaccatt ccaatacgtc ttctaatgat
     4741 aaccggatca attgatttat catatatgtc aatcccatca actacaactc gtccttctgc
     4801 acgagctccc ggtgtcattt cgtgcattcg atttagacat ctgataagtg tcgtcttacc
     4861 acaacctgag ggcccaataa atgctgttac ggttttctcc ttcacattca ggttgatatt
     4921 ctttaatact cgttttgttc cgtaccatcc attaacattt tcaatcctta ccttgaactt
     4981 ttcagtggct tgaactacag tttcttttgt ttcgatgggt tcctctatgg ccaatagaca
     5041 atcattattg aaaatttcaa taattatgct ttatctatat agtgaatata gacatattga
     5101 tcaggtaggt gccttaaaag accttttttg aagtaatagt cttaatccca tactcaacgc
     5161 caaaatcatc aaaatgagaa ttagggctga accccatcca aaggcatggg cagattcata
     5221 tggttggcta gctaacctcc aaattctcag aggtagagca tctactggac ctgtaattcc
     5281 ggtaaagaag aggcttgtgc caagtattgt cattatgaga ggggcagttt cacctgcaat
     5341 tcttgatatg gcaatgacaa tacctgtgag aatgccatct tttgcagtag gaagtacgat
     5401 aaataaggta attttagcct tggaaagtcc tagggaatga cctgcttctc gcaacgagta
     5461 tggaaccacc ttcaatgttt cttctgtgac gcgcactact attggcatca ttattataga
     5521 gagagatagt gctcctgcca ataccgaaaa ggaaccaatt gctaaaacta taacaacata
     5581 tcctacgatg ccaaccacta ttgatgggag acctgtaagg acatcgttga agaatctaac
     5641 cgcatttgaa aatgcccctt ctttggcaaa ttctgacagg taaatgcctg ttagtactcc
     5701 tactggtgtc gctatcgcag ctgcaagtcc tacaacaata atagttccct gtattgcagg
     5761 ggctatgcca ccactacctg aaccaataga accttgtgtc tgtgtgagaa actcaaaact
     5821 aatggcacta attccattct tgataacttc aagtaatata ctagcaaggg ggactatcgc
     5881 agcgatgaca caaacgattg taaatatggt aacaagttta tcgacaagca agcgtttcct
     5941 atatttcttg tttacagtct ccaggacaat ttgcctataa ttcttgttag aattcattgt
     6001 cattgtgatt tggcccctga ttgtactttg attttctttt taactaaaag acgtgctcct
     6061 atgttgattg ccatcgtcaa gattaagagt atggctccaa gagcaattag agccgaaaga
     6121 tgtagatcag atgacgcttc attaaattca ttggctacca aacttgcaag agtttgaccc
     6181 tgagagaaaa atgaagtcgg tattgcacta gggcctatta cgttgccaat aatcattgtc
     6241 acaagaattg tttctcctac tgctcttccc aaaccaagca tagaagcacc tacgagtcct
     6301 gatttaacat aagggaatac agccattcta acggtttccc aacgagtggc accaaggcta
     6361 tatgctgctt ctctctgtga atcaggaacg actttcatta cctctctgca tattgacgat
     6421 attatcggaa ttatcataat tgccaatact attcccgccg taaatatgtc aagaccaaat
     6481 ggtgtcttcg cgaaaaaagg gaggtatcct ccaaaagcat cgtatattgg cttttctatc
     6541 aagtctctta cccagaatct aaatacgaat aatgcccaga gaccataaat tatactcgga
     6601 actgcagcaa ggagttctga tacaaaggct agtggagtgc ctatgcgagg gggtgctatt
     6661 tctgaaataa agatagcgat tgccaaacta attggaactc ctatgaccat cgctatagca
     6721 gagctcagga gggttccaat aatgtaggga agagcgccaa atgattcacg gcccacatcc
     6781 caatttgatt gagtaacaaa gttaatacct tctgccaaaa aaatatctgc agatcctttg
     6841 cctactgaaa aggcgacaag tcctacaatt agtaacgtat aagctgcggc tccaacaaca
     6901 agtcctttaa atatcttatc atgccccttg tttctgacca caaaaagcgt tgatatgtat
     6961 tgtctatgtt tggaccctat tacagaaata cccggccacc tgccattttt ctaacaaata
     7021 gacttgataa aatcaatcta ttattattat tgttatttat atcataattc caaatagcaa
     7081 aagacaagaa atttagagat aaaaaataaa gaaaatggaa aggattgtta ttcattgttg
     7141 tcacattgtt gctgtcatta ggttatgggc tgcccattga atgtaaggga ttttagagta
     7201 tcctggtcaa gctttactac cccatcaggc aatggaacat aatctaaact ctccgccatt
     7261 ttctgaccgt cagttattgc ccatgagatg aaatcgacta gtgccttggc cttggcttgg
     7321 tctagatttg gatttgtgct caactccttg ttcaagagta gatatgaaaa gctggctatg
     7381 ggatatgaat cagcacctgc tgcatttaca agggtaacat cggtccagac accatcacct
     7441 tttggtagtg ttgccacata gctctctact gctgccatag tagagttaag tgacggttca
     7501 acaaaattac cttccttgtt ctgaataaat gcaaatggcg tgtttgtagt taacgcataa
     7561 cttaattcaa tatatcctat tgtgtttgga gttcccttaa tggcgtttgc gactccttca
     7621 tttcctggtg caccaatacc gactggccat tcaacagact ttcctttccc tagttgatct
     7681 ttccatgctg gacttgcact agataaatag tcagtccaga caaatgtagt acctgaaccg
     7741 tctgatctat gaaccactac tatgtcatca ccgggtagag tcttgtcagt atttagagac
     7801 tgtatcttgg gatcattcca tttggtaatt tttcctaaaa agatgtcagc tagaacttca
     7861 cctgtaagtt ttagtccctt gtcaggaata cctggtaaat tataggctgc tactacagaa
     7921 cctattgttt ctggaatatg tactgctcct ggtgctttct ggctttcatt ttgagtgagt
     7981 ggtgcatcag tagctccgaa atcaactgtt ttttctgtaa attgttttac tcctccaccg
     8041 cttccgatag actgataatt gatgttgaca tcaggcttta ctttctggta ttcgactctc
     8101 catgtatcaa ttagtgggaa tggaaaagtt gctccagctc cattgattgt tacggcacct
     8161 tgtgcatata cggcagatgg cattatcgta gatgttgcca aaagtatagc tgcactaatt
     8221 cctatgagta ttttgcttat tagcatagat cacctagaat aaaattagtt cataattatt
     8281 tgccatgttt ttatcatagt caatatgtaa ctatattcat caacataatc tatatgcaat
     8341 tttatctgca tgagatactt cagtgtctgg agtcgagaaa tattgaattg actgctgaca
     8401 aaaaatacat agctgtaaat gatcctatat gatctaagta aataccaagg gaaacaatta
     8461 acatatccat cgctcttaa
//
LOCUS       DASUMD010000139         2947 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_39105, whole genome shotgun sequence.
ACCESSION   DASUMD010000139 DASUMD010000000
VERSION     DASUMD010000139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2947)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2947)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2947
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39105"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..266)
                     /locus_tag="VFX26_03855"
     CDS             complement(<1..266)
                     /locus_tag="VFX26_03855"
                     /inference="COORDINATES: protein motif:HMM:NF013119.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008686 -
                     3,4-dihydroxy-2-butanone-4-phosphate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxy-2-butanone-4-phosphate synthase"
                     /protein_id="HEX5573641.1"
                     /translation="MSPVEDAVKDLRNGKFVLIHDDESRENEVDMVKAAQHIGPRDIA
                     TMRNDAGGLICLAIPYEIASELNLIFMHDLLHFASKNNPSLSKI"
     gene            complement(320..925)
                     /locus_tag="VFX26_03860"
     CDS             complement(320..925)
                     /locus_tag="VFX26_03860"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HEX5573642.1"
                     /translation="MFTGIIEGTGIVKSVAKIKNVNRTADKRVEIDLGKLGKGLQVGD
                     SVNVNGTCLTATRILKTLAYFEVVKETTRRTSLGLLKVGDRVNLERSLRINDRIEGHI
                     VLGHIDGVGKIEDIVKIPSETKIWISVNKQIANSLVPKGSIALDGISFTIVDVSKASF
                     SIALVPHTLAVTTFKNKRKGDKVNIEVDILSKYVAKLLPRY"
     gene            1141..2253
                     /locus_tag="VFX26_03865"
     CDS             1141..2253
                     /locus_tag="VFX26_03865"
                     /inference="COORDINATES: protein motif:HMM:NF015325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HEX5573643.1"
                     /translation="MEFVETINESELINGTSKVISVKGKDIALFRIDNKITALGDSCL
                     HKGGPLTKGKIQKKYDGYYVTCPWHGWEYNISNGKAPPGYDEQQSVYDVQIKNGKVFV
                     SNQPIVYSFNKKYDGSLKDLIKLEYKTTPDSLNILGISTTNMNGNLERDSTSEMSLNK
                     ALTYAKQKYNASTVLLKLRDLEFRNCEGYYSINEQACTWPCSISEMDENDGMNEVYRK
                     MILWSDIVIISTPIRWGNASSLYYKMIERLNCVQNQTTLHDRVLVKNKVASFIITGGQ
                     DNIQHVAGNMMVFFTELGFSLPPFTFMGWSRGWNAEDMENNVIQFSKSRYVNRSVKDL
                     VDNGIKLLHQVKGDPCKTVSSPQPKIMEAPSKLKID"
     gene            complement(2357..>2947)
                     /locus_tag="VFX26_03870"
     CDS             complement(2357..>2947)
                     /locus_tag="VFX26_03870"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEX5573644.1"
                     /translation="YIMSGQHNSIFRNQVLNRSDSPAHRMEYQRPILSDLYVKDAIKN
                     ANNRLSKDLSIDETLQIMNRNNNSNKMILVVDNEDILLGVVYKHQLFEFPEEYRKSVK
                     LESIMIKDPFFAYNSDSLHNALVRFSSNDLQEMPVLSNEDHKVIGIITISDLVKLYDK
                     EVQKITKVINRSDLNTKNNDTYNIDQIKNKSAHSEQ"
BASE COUNT          972 a          523 c          486 g          966 t
ORIGIN      
        1 atgattttag ataacgaagg attatttttg gaagcaaaat gtaataaatc atgcataaat
       61 atcaaattca attctgaagc aatttcatag ggtatagcca ggcagataag accaccagcg
      121 tcattcctca tagtcgctat atcgcgagga ccaatatgct gagcagcctt taccatatca
      181 acctcgtttt ctctagattc gtcatcatga atcaagacaa attttccatt tcttaagtcc
      241 ttgaccgcat cttcgaccgg tgacacgagg ttcaaaactc taattacgat tataaagttt
      301 actgattttc tggtaattac taatatcgtg gtaataattt tgcaacatat ttgcttaaaa
      361 tgtcaacttc aatattaacc ttatctccct tccgtttatt tttaaatgta gtaacggcta
      421 atgtatgcgg aaccaaagct attgaaaatg aggccttcga gacatcaaca atagtaaagc
      481 taataccatc cagcgcaatg gatccttttg gtaccaagga attagcaatc tgtttattca
      541 cacttatcca tattttggtc tcagaaggaa ttttcactat atcctcaatt tttcctacac
      601 cgtcaatatg acccaaaaca atgtggcctt caattctatc atttattctt aaacttctct
      661 ctaggttaac ccgatccccc actttcaaca accctaatga agttcgtctc gtagtttctt
      721 ttactacttc aaagtatgct agtgtcttca aaatccttgt agctgtaaga catgttccgt
      781 tgacatttac actatcacct acttgtagcc ctttacctag ttttcccagg tcaatctcaa
      841 ccctcttatc agcagttctg tttacgtttt ttattttggc cactgatttg acaattccag
      901 ttccttctat aataccagtg aacataaagt attgatctac aattccgatc gtaataaaaa
      961 tatttcatct ctattcttgg ctaattcaca gttggtagca ctagaaataa aaaataattg
     1021 tattagagtc aattgcattt taagcgatga ttctatcaaa agaattcatg ctttatgaga
     1081 tagtgaaatt atttacaaat caaagctata ctataataac ttgaattagt aataatttac
     1141 atggaatttg tggagaccat aaatgaaagt gaattaatca atggaaccag taaagtaatt
     1201 tctgttaaag gtaaagatat cgcattattt agaatcgata ataagattac tgcattgggc
     1261 gacagttgtc tgcataaagg tggtccattg acaaaaggaa aaatacagaa aaaatatgat
     1321 ggctattatg ttacttgtcc ttggcatgga tgggaataca atatttcgaa cggaaaggca
     1381 ccgcccggtt atgatgagca acaatctgtc tatgatgtac aaataaaaaa tggaaaagtc
     1441 tttgtttcaa atcaaccaat cgtatactct tttaacaaaa aatatgatgg ctctttgaaa
     1501 gacctaataa agcttgaata caaaaccaca ccggattcct tgaatattct gggaatatct
     1561 acaacaaata tgaatggaaa tttagaaaga gattcaactt ctgaaatgtc attaaataag
     1621 gcactaacat atgcaaagca aaaatataat gcatctacag ttttgctaaa acttagagat
     1681 cttgaattcc gaaattgtga gggatattac agcattaatg aacaagcatg tacatggccc
     1741 tgttcaattt cagagatgga tgaaaatgat ggtatgaatg aagtttacag aaagatgata
     1801 ctttggtccg atatagttat tatttctact ccaattagat ggggaaatgc atcttcatta
     1861 tattacaaaa tgattgaacg tttaaattgt gttcaaaatc aaacaacatt acacgaccgt
     1921 gtacttgtca aaaataaggt agcgtccttt attattactg gaggacagga caatatacaa
     1981 catgtcgcag gaaatatgat ggtttttttc acggagttgg gattttcttt accaccattc
     2041 acattcatgg gatggagtag aggttggaac gcagaagata tggaaaataa tgtaatccaa
     2101 ttttcgaagt cacgatatgt caatagatct gtcaaggatc ttgtggacaa tggtataaaa
     2161 ttacttcacc aagtcaaggg cgatccatgc aagacagtgt cttctccaca accaaaaatc
     2221 atggaggcac catcaaaatt aaaaattgat tgactctggt tatatgcgta caaagtcact
     2281 ttcctggaat atcgtaaaat tgaccatctt ctctctctca atttatcctt tatcctagaa
     2341 aaaactgaat caatctctat tgttctgaat gagcagattt attctttatc tgatctatgt
     2401 tataggtatc attgtttttg gtattgagat cagaacgatt tattacttta gttatcttct
     2461 gaacctcctt gtcatatagt tttactaaat ctgatatcgt aataattcca ataactttgt
     2521 gatcttcatt tgataacacg ggcatttctt gaagatcatt tgatgaaaat ctaactagcg
     2581 cattgtgaag cgagtctgag ttatatgcaa agaagggatc ctttatcatg atgctttcta
     2641 gcttaacaga tttgcgatat tcttcgggaa attcaaagag ctggtgtttg tataccacac
     2701 ccagaagaat atcctcattg tcaacaacta ggatcatctt attactatta ttattccgat
     2761 tcattatttg aagagtctca tcaatggaca agtcctttga caatctatta ttggcgtttt
     2821 taatggcatc ctttacatag agatcgctca aaatgggacg ctgatattcc atcctgtgag
     2881 caggtgaatc agacctattt agtacctgat ttcggaatat tgaattgtgt tgaccggaca
     2941 ttatata
//
LOCUS       DASUMD010000140         2447 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_592024, whole genome shotgun sequence.
ACCESSION   DASUMD010000140 DASUMD010000000
VERSION     DASUMD010000140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2447)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2447)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2447
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_592024"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(232..543)
                     /locus_tag="VFX26_03875"
     CDS             complement(232..543)
                     /locus_tag="VFX26_03875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573645.1"
                     /translation="MEQSHKKRIVGGYAYVFVTNNGTFSVSSDWVYPQWHTHELTLNG
                     KNCVTSMKMDGGGAEVEDVVKLTETNATDIQRVMTVEFTLSSQDGSLCVTKIFNSIPK
                     A"
     gene            complement(919..1323)
                     /locus_tag="VFX26_03880"
     CDS             complement(919..1323)
                     /locus_tag="VFX26_03880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573646.1"
                     /translation="MTKYSKVRRISTQAFLIASTMLIITISSDLSTWSFGQLDVHVNQ
                     PPMITVVSPIEGEINQTVIINASISDPDGNITSIIWNQEDESGPVNMNISQDKQSMSF
                     IPTQNVTYVFSVEGIDNNGSATLESVQVNIGS"
     gene            complement(1715..>2447)
                     /locus_tag="VFX26_03885"
     CDS             complement(1715..>2447)
                     /locus_tag="VFX26_03885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573647.1"
                     /translation="VGNITQNLLINDKNARPFAIVSDPVNNLIWVTDEAGKLVKIDPA
                     NNYSITEYSPSGNKSLLSPTALLIDKSSGEIYISQHDGHRITSFNPLTKTFTDLPIIN
                     ESGLPFGMAYDKYGNLWVAEHTINKIAVIDTQKSKIKEVTLETPAPFVQWLTSDSDGN
                     IWFAEQRGNSIGMIEPNVGQNTQQQKQEPTESPISITTSNVGLNINYQNFVAPGILIV
                     IILSAFMYARSVSNLKANIANISEQ"
BASE COUNT          754 a          436 c          406 g          851 t
ORIGIN      
        1 agttttgccg taactaagac ttgatgtaaa atgtaagagt tttctcaaag aacttatacg
       61 ccttcaaggt agacccagag tattactaaa aatggattag gaaatgaata gctcattcct
      121 aacccattaa tgaatcgagc aatttgcgca agctgctatg aatattaatt gcctcaataa
      181 atatcggttc tggtacattc gacgaatgta ctaatacacc aattgaacaa actaggcctt
      241 tgggatagaa ttgaatattt tggttacaca caaagatcca tcttgactac tgagggtaaa
      301 ttcaactgtc ataactcttt gaatatctgt tgcatttgtc tctgtaagtt taacgacatc
      361 ttcaacttca gcaccgccac catccatttt catagatgtc acacagttct ttccattcaa
      421 tgtcaactca tgtgtatgcc attgaggata cacccaatct gaagaaactg aaaatgtacc
      481 attgtttgtt acaaacacgt acgcatatcc acccactatt ctctttttgt gggattgttc
      541 cacctgctgt tcgttctact gctaaaaatg gatttccgtc gtttccaata ccaaaatctt
      601 ttatgataaa atcaggttca ttaaatttgt ttttgccccc caaaaatgat ttgatgatta
      661 tttgacgcca tactatttac taaatatgag atcaatattg tcaaaagaaa tagatttttg
      721 attacaatta gattatcttt atacaagttg tctaagatag tagagttcta gaactaataa
      781 atattttttt cctttgagct caaaattttc aattcactgt gcaatttatt tcactcaaat
      841 tttgaattca ggtatttaca gattctacga tcagtattta aaaagtaagc attgtatata
      901 aaaaaatcaa ttagttcgtc aggagccaat atttacttga actgattcca aagtcgctga
      961 tccgttatta tcaattcctt cgacgctgaa aacataggta acgttctgtg tgggaataaa
     1021 tgacatcgat tgtttatcct gtgaaatatt catattgaca gggccagatt catcctcctg
     1081 attccatatt atggaagtta tattaccatc tggatctgaa atcgatgcat ttatgataac
     1141 agtttggtta atttctcctt ctattggtga tacgacggtg atcataggcg gttggtttac
     1201 atgaacatct aattgtccga agctccatgt actcaaatca gaagatattg tgatgattag
     1261 cattgttgaa gcgattagaa acgcttgagt agatattcgc ctgactttac tgtattttgt
     1321 cacgatctaa aggtgtgata ggatcttaat agccatttct tctaattctc ttcctccatt
     1381 aagaattggc tagattaaat cgtcaccatg gttttgctac tacgttatgt ttcttaagca
     1441 accgagttta cttaattgct ccagtatcaa aatagtgtcc caaagtgtca taaattgagc
     1501 gcggtaaaaa agcgcaattg atattttcat caaaatcttg attattttat cgcattattt
     1561 atcaatttca aggttatggt ctaatttttc tatcagaaat tatgaatcgc agcacctgtc
     1621 actatcaaac tattagcatc agttgaacta agactcaaac attattgaac attaaggtac
     1681 aagccttata gaaaattgag tttcaggaga caatctattg ttctgatata tttgcaatat
     1741 ttgcttttag attcgagacg cttctagcat acataaaagc actcaaaata atcacaatta
     1801 gaataccggg cgcaacaaaa ttctggtaat tgatattcaa cccaacattt gatgtcgtga
     1861 ttgagatagg actctcagtt ggttcctgct tctgctgttg agtattttgt ccgacgttag
     1921 gttctatcat cccaattgag tttcctcgtt gttcggcgaa ccaaatgttt ccatctgaat
     1981 cagaagtaag ccactgaaca aatggtgcag gtgtttcaag cgttacttct ttgatttttg
     2041 atttttgagt atcgatcact gcaatcttgt ttattgtatg ttcagcgacc cataaattgc
     2101 catatttatc atatgccatt ccaaatggca atcctgattc attgattatt ggcaagtcag
     2161 taaatgtttt tgttaatgga ttaaaagaag ttattctgtg accatcatgt tgtgaaatat
     2221 aaatttctcc actagattta tcaatcaaca acgcagtagg gcttaataat gatttgttac
     2281 cactgggtga atactcagtt atagaatagt tattagcagg atcaattttc actagctttc
     2341 ctgcttcgtc agttacccat attaaattat tgacagggtc ggagacaata gcaaatggac
     2401 gtgcgttttt atcattgata agtaaattct gagttatgtt acctact
//
LOCUS       DASUMD010000141         5785 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1035400, whole genome shotgun sequence.
ACCESSION   DASUMD010000141 DASUMD010000000
VERSION     DASUMD010000141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5785)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5785)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5785
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1035400"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            66..572
                     /locus_tag="VFX26_03890"
     CDS             66..572
                     /locus_tag="VFX26_03890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin family protein"
                     /protein_id="HEX5573648.1"
                     /translation="MIGKHNHSDGEHFHFVWGPGRSDAETATKTEVQDAYKARGEEYV
                     PLGVHGTMIAVDWDSCYADGACIEACPTQVFQWYRTEQDVPAIEMANSTSAGTGQDHE
                     RDGRVDYTDKSDPIREHDCIWCMACVSVCPPQAIKVDQSNLEFHEKSAGTFSEALAKG
                     SAPPPHAH"
     gene            687..833
                     /locus_tag="VFX26_03895"
     CDS             687..833
                     /locus_tag="VFX26_03895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573649.1"
                     /translation="MAIEERHDKLLTSLRTAYAEELNLKKDQTSYPDLFGALRLALKG
                     YNIK"
     gene            complement(847..1245)
                     /locus_tag="VFX26_03900"
     CDS             complement(847..1245)
                     /locus_tag="VFX26_03900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573650.1"
                     /translation="MVERLPIDSVTLSKLMDTPAVIRIVNILDITSLSILELFEYDVG
                     MGDIIYSMANGVITYDMSAMTQAAEESQLEVPPNPHLYNAFVRRKVKLTEIGLYILES
                     LKGDRFERRSSDEFQHQTSYTDPRHPTTIS"
     gene            1520..2083
                     /locus_tag="VFX26_03905"
     CDS             1520..2083
                     /locus_tag="VFX26_03905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573651.1"
                     /translation="MTNYPTYCVCPFIINAGVNKKKLTEQFLKFPKGLNLQSFLTGQM
                     KKCLFISILALAIISMLPVINSSYAQNATSEASTFHGDVDDSPIEAIIMINEDQNNTA
                     FFQPNVVTISVGGEILIANNATSDHSVTSGSGPNDPMLGKMFDTGIIKPRAFVEYVTE
                     NLTPGNYSFFSTIHPQIKGTMIVVAPK"
     gene            complement(2437..2574)
                     /locus_tag="VFX26_03910"
     CDS             complement(2437..2574)
                     /locus_tag="VFX26_03910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573652.1"
                     /translation="MRQSEYLNYGFSSVMETVMLSLLRDDILDQKTGRRCLALVVKLN
                     D"
     gene            2640..3101
                     /locus_tag="VFX26_03915"
     CDS             2640..3101
                     /locus_tag="VFX26_03915"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEX5573653.1"
                     /translation="MSLSVSYRKILVAVDGSKASTYAAEHAVNLAQRYKASLIILHVL
                     HLKTLRQISSSFITAPTSGLEEAKELKARAKKWTENINKKAKTKGLVSKTKIIEEATS
                     VVGSIVESAEEEGADLIVVGTTGKTGFRRLLLGSVAQGVLAYAHCPVLAVR"
     gene            complement(3212..4024)
                     /locus_tag="VFX26_03920"
     CDS             complement(3212..4024)
                     /locus_tag="VFX26_03920"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEX5573654.1"
                     /translation="MSRVIDIAIRDSVPQIFKRPYLSVLPDTTLMQIAPFMAIGPQIY
                     VDGLIVLEGEIPIGKISSKQILLAIINSKYPDWLKKTALQIMDTSEISLEMDYPLSRA
                     IDIFNQTSFAFIPITKSGLVVTSLSVRDVLPVIMTTTFHATLKDIASPLVLLSKRTNL
                     KVALNQMFQKKIRNIIVESDNGYGIINDRKILEFLFSQNGRKIMDMNSLGIQAVEIDL
                     VDKLSAMSVSDTTTVSKAAELLMDINTPCVLLNKSIVTPWDIVMKTIERISI"
     gene            complement(4085..4231)
                     /locus_tag="VFX26_03925"
     CDS             complement(4085..4231)
                     /locus_tag="VFX26_03925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573655.1"
                     /translation="MLKGSQVFDRCPVCNGKKLEIIPVEDYEHYKLVINQKSGLSLEF
                     TGED"
     gene            4698..4988
                     /locus_tag="VFX26_03930"
     CDS             4698..4988
                     /locus_tag="VFX26_03930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573656.1"
                     /translation="MPADDESPETKIIPTEDINTVQHKISGEKFPEIILELCDFCHWS
                     LICFNKRGVVEKCPDCSRVVSKIPMNIDEICSITYDDKRGVNIRFDRKKPMR"
     gene            complement(5292..5495)
                     /locus_tag="VFX26_03935"
     CDS             complement(5292..5495)
                     /locus_tag="VFX26_03935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573657.1"
                     /translation="MFPMIVKAIKVIMVHGYRYGHLSNTEQIKGKQETEGPLSSLDSA
                     GSVYINHNYNYKKPAKLIHDSIF"
BASE COUNT         1877 a         1056 c         1071 g         1781 t
ORIGIN      
        1 gttataagtt aatttgactt gtacatgtca tgccaataga tccagacttt ccgaggaatc
       61 ataaggtgat aggaaaacac aaccatagtg atggtgaaca ctttcacttt gtatggggtc
      121 ctggtagatc agatgctgaa acagcaacaa agactgaagt ccaagacgca tacaaggcaa
      181 gaggagaaga atatgtaccg ctaggcgttc atggaactat gattgcagtt gattgggatt
      241 cctgttatgc ggatggtgca tgtattgaag cctgtccaac acaagtattt caatggtata
      301 gaactgaaca agatgttcca gcaattgaaa tggctaatag tacgagtgct ggcaccggac
      361 aggatcatga gagagatgga cgtgtggatt atacggataa atcagatcct atcagagaac
      421 atgattgtat ttggtgcatg gcttgcgtat ctgtctgtcc tcctcaagca atcaaggtag
      481 accagtcaaa tctagaattc catgaaaaat ctgcaggaac atttagtgaa gcattagcaa
      541 aaggtagtgc gccacctccc catgcgcact gaccatccaa gtctttttat ttctgattga
      601 atttcaggat cctcatgttc tttattcaga taccatatgc tttgtagaat taattagttc
      661 ccttattagt attatcaaaa ggatatttgg caatagagga gagacatgac aaacttctta
      721 ctagtttaag aacggcatat gctgaagaat tgaacctgaa aaaggaccaa actagttatc
      781 cagacttgtt cggtgctcta agattagcat taaaaggtta caatataaaa taaaaaagac
      841 aaaagactaa gatattgtag ttgggtgacg aggatctgta taagacgttt gatgttgaaa
      901 ctcgtctgac gatctgcgct caaatcgatc cccttttaag gattctaaaa tgtatagacc
      961 tatttctgtc aattttactt tccttcttac aaaagcattg tagaggtgtg gatttggagg
     1021 aacttccaat tggctttctt cagcggcttg tgtcattgcc gacatatcgt aagtaatgac
     1081 tccattcgcc attgaataaa taatatctcc catgcccaca tcatattcaa agagttccag
     1141 aattgaaagg cttgttatat caagaatatt tacaatccta atcacggcag gcgtatccat
     1201 taacttgctt agggtcacac tatcgattgg taaacgttca accatggatg aaagtaccat
     1261 tcctaattaa taactagtca accttcagtg tacctcactg caaacaactt acttataaaa
     1321 atcctttact tgtatgaatt acgagacatt ggatcgtggg aggactgagc ctttatcctt
     1381 tgtaaccata acacacagtt agtcctccca tgcgtgcgag gacgctcttg cagtttcgtt
     1441 aaaaggctat gaaatagaat aagtctgtta gtggtcgtta agaagtacct gtatgtttag
     1501 tgagtgggtt tatgaatagt tgactaatta tccaacatac tgtgtttgtc catttattat
     1561 aaatgcaggg gtaaacaaga agaaactgac tgagcaattt ctcaagtttc caaaaggatt
     1621 aaatcttcaa agtttcttaa ctggacagat gaaaaaatgc ttgtttatta gcatcctggc
     1681 attagcaata atctcaatgc ttcctgtcat caacagttct tatgcgcaga atgcaacgag
     1741 cgaggcaagt acctttcatg gtgatgtaga tgatagtcca atagaagcaa taattatgat
     1801 aaacgaagat cagaataata ctgcattttt ccaacctaat gttgttacta taagtgtagg
     1861 cggcgagata ttaatcgcaa ataatgccac atcagatcat tctgttacca gtgggtcggg
     1921 tcctaatgat ccaatgttag gaaaaatgtt tgatactggc attatcaagc caagggcttt
     1981 tgtagaatat gttactgaaa atctgacacc tggtaattac tccttcttct cgacaattca
     2041 tccacaaatt aaggggacaa tgatagtagt agcaccaaaa tagatgaatt aataatttct
     2101 ctcaggacta cttattgaat aatcctgaca ttatcagaac catgtctttt ctgttctgct
     2161 gcaatgtcgg catcatcata ttcatcagtt ttgaatcact gtatatccaa aagatttcat
     2221 ttatcaaatg ttgctttaat tatttatcag gtgataatga ggtaatccgg aagtccttta
     2281 gacattttac taccaatata gcctctggct atagattcaa gattgcagaa caggagatcg
     2341 ttactagcga aacgattgaa gattctcttt gcgactttac aattttattt tcaagctctt
     2401 tcaattctta ttgctagttt tcagagtcag taggtcctag tcatttaact ttactaccaa
     2461 tgcgagacac cttctccctg ttttttggtc tagtatatcg tcccgcaaaa ggctcaacat
     2521 gaccgtctcc attacggatg aaaatccgta gttgaggtac tcagattgtc gcatcaaatt
     2581 actattaggt taatgataat agtattatta ttgatgcatc ttgaatataa tggaatataa
     2641 tgagtttgtc agtttcatat cgaaaaatac tggtagcagt tgatggatct aaggcgtcaa
     2701 cctatgcggc tgaacacgcc gttaacttgg ctcaaaggta caaagcctct ctcattattc
     2761 ttcatgtttt gcatttgaaa acgctgagac aaatatcatc atcctttata actgcgccta
     2821 catccggact ggaagaggca aaagaattaa aagcacgggc aaaaaaatgg acagagaata
     2881 ttaacaaaaa agctaaaacc aaaggcttag tttcgaaaac aaaaattatc gaggaagcaa
     2941 catcagttgt gggttctatt gtagaatccg ctgaagagga aggggcagat ctgatagtag
     3001 tcggtaccac gggcaaaaca ggttttagaa ggttgttact cggaagtgtg gcgcaaggtg
     3061 tattggccta tgctcattgc ccagtactag cagtcagata atcagttaga ttcaatatgc
     3121 aattatctgc aaaaataacc atcttacact caaaccaaaa accagcacaa atgattgcga
     3181 gtaagttata actattgact catgattaaa attaaatgga gatcctttca attgtcttca
     3241 tgacgatatc ccacggagta acaatagatt tgttcaatag tacacaggga gtattaatat
     3301 ccatcaataa ttcagccgct ttgcttactg ttgtagtatc actcacactc attgcagata
     3361 atttgtcaac cagatcaatt tcaacagcct gtattcccaa actattcata tccataattt
     3421 tcctaccatt ttgactaaat agaaattcta gaatttttct atcatttata atgccgtagc
     3481 cgttgtcaga ttcgacaatg atatttctta tcttcttttg aaacatttga ttcaaggcaa
     3541 ctttgagatt ggtcctctta gataatagga ctaaaggaga agcaatatcc tttaatgttg
     3601 catgaaaagt ggttgtcatt attacaggca aaacatccct tacagagaga gatgttacaa
     3661 ccaagccaga tttagttatc ggtataaaag caaaagaagt ctgattgaaa atgtctatgg
     3721 ctctgctcaa cgggtaatcc atctcaagag agatttcaga agtatccatt atctgtaaag
     3781 cagttttttt caaccaatct ggatatttag aatttataat agcaagcaag atttgtttgc
     3841 tactaatctt accaattggt atttctcctt ctaagacgat taatccgtct acatatatct
     3901 gtggccctat tgccataaaa ggtgcaatct gcatcaatgt agtatcagga agtactgaca
     3961 ggtacggtcg cttgaatatt tgtgggaccg aatctcttat agcgatatca attactcttg
     4021 acaacgaatc tagttttaac gttctttctt aatgaactta ttcatcataa atttgttgat
     4081 aaccttaatc ttcaccagta aactctaagc tcaaaccact tttttggttt atcactagtt
     4141 tataatgctc ataatcttca acagggataa tttctagctt cttaccattg cacacaggac
     4201 accgatcaaa tacttgggaa ccctttaaca tggatacagc ccacagacaa tttttacaaa
     4261 taactaagtc cctgttttca gcatcttttt tttcgtacaa gcgacataag gattaagcat
     4321 aagataataa aaatattttc ttattgaaag cgatttagct aatttactgg gtatagacgg
     4381 tgccacctat tactacagta agatcttcac atttgatgaa gcaaatgaat actttcactt
     4441 actactacaa aatatcgcct ggaagaacga tgaattaata gtatttggaa aacatatagt
     4501 taccaaaagg aaaactcccc tctaaagagt agactagtct aactggatcg aaattgttaa
     4561 aaatgtgatt cgcgacggtc tgtgctatac catgtattta tgtcatgtcg gagaatggca
     4621 aggaacgacc attgcgtcag aagtggaaac taataagtac cttctagcat attgataatg
     4681 aagtggattt tcaagacttg ccagcagacg atgaatcgcc tgagactaag ataatcccga
     4741 ctgaggatat caacacagtt cagcacaaaa ttagtggaga aaaatttccg gagattatat
     4801 tagagttatg tgatttttgc cactggtctc ttatatgttt caacaaacgt ggtgtggtag
     4861 aaaaatgtcc tgattgtagc agggttgttt ccaaaattcc tatgaacata gatgagatat
     4921 gttctataac gtacgatgat aaacgcggag ttaatatccg ttttgacagg aaaaaaccta
     4981 tgagatgatt ccgcctaaat atctctagct gagtagtaaa gtgaaggtga ttagatcatt
     5041 aggtataaat cagacagtga atactcaatc agcgacttca attactgatg taatgactca
     5101 aacaacggaa taacaaaaaa cttcgaacat gacaaacaca aataccacca tcaacaacaa
     5161 agggactggc gggttggtgg attagaagat caacaagata catcagtatt ataagtccca
     5221 ccagtcaagg catgatgcat tactatagta gttaagacgc atgtgtacaa tgcaatgcca
     5281 tgccatcaaa atcagaatat tgaatcatga attaattttg ctggtttttt gtagttataa
     5341 ttgtgattga tgtaaacaga acctgcagaa tctaaagatg ataatggtcc ttcagtttct
     5401 tgtttgcctt taatttgctc agtgtttgat aaatgtccgt atctatatcc atgaaccatt
     5461 ataaccttta ttgcctttac tatcataggg aacaaatctt ccttgtggtc ctccctcttt
     5521 ccccgccagt cgttctaatt catcaaaact agaattgata aactggtcat aggaaaataa
     5581 attgtttcta taactgctag tcatcattat cttggtagat atttagcact cgaaaacttc
     5641 agttgtgtgc ccaacaaatg aatggcattt acaccttttg caataggtat agccatcctt
     5701 gtcagtaaga tgaaattctc tagcgtgata acacctaacg catataatgg atttgttcag
     5761 gatttcttgg gtcattttct cttat
//
LOCUS       DASUMD010000142         3677 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_595008, whole genome shotgun sequence.
ACCESSION   DASUMD010000142 DASUMD010000000
VERSION     DASUMD010000142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3677)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3677)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3677
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_595008"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..337
                     /gene="nuoB"
                     /locus_tag="VFX26_03940"
     CDS             <1..337
                     /gene="nuoB"
                     /locus_tag="VFX26_03940"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoB"
                     /protein_id="HEX5573658.1"
                     /translation="GPRYDVERFGIIEAFGSLRQCDLIVVQGTVTRKMAPRLRMVYDQ
                     MPDPKYVIAMGACAITGGLYIDSYNVLPGVDGIVPVDVYVPGCPPRPETLIQGCMLLQ
                     EKIKRSKIR"
     gene            complement(635..838)
                     /locus_tag="VFX26_03945"
     CDS             complement(635..838)
                     /locus_tag="VFX26_03945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573659.1"
                     /translation="MVKTKDILLLLELKIEIPQDIISDKNRLDSVKQGILKAISKGPY
                     EEGLSFKILHASFDDYHSKRRMT"
     gene            1090..2097
                     /locus_tag="VFX26_03950"
     CDS             1090..2097
                     /locus_tag="VFX26_03950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEX5573660.1"
                     /translation="MNKKYYQLSSDLTICRIVNGMWQVAGGHGQIDHELAMADMLRYH
                     DAGFTTWDLADIYGPAEDFIGEFRRRLSKAKGKEELDKIQSFTKWVPQPSRITRSMVN
                     SSIETSIRRMDVSSLDLLQFHWWDYNNPYYMDALKYLSELRDKGSIKHLGLTNFDTDH
                     LQIITDSGVPIASNQVQYSIIDRRPEVKMIPFCRKHNISLLTYGSICGGLLSERYVGK
                     TEPSITDLNTLSLQKYKKMIDTWGNWNLFQKLLLVLDNIAKKHRASIANVATNYILSK
                     ATVAGVIIGVRLGIIDHIDDNSNVFSFNLDDSDLESINQVCENANNLYEIIGDCGEEY
                     R"
     gene            complement(2139..3395)
                     /locus_tag="VFX26_03955"
     CDS             complement(2139..3395)
                     /locus_tag="VFX26_03955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEX5573661.1"
                     /translation="MNIKDIFGMSFDALKERKTKSILTIIMVMVGSSLMVAVGGISAG
                     FGGFFNQQLSNLAANIIFINPAQVQQGGGGPVVGPPPTPKITLNAAVENRLKSLPFVD
                     DVIPSYQSQVILESQGDSKEYQVFSMDPQKLTVLSPTLEFVEGSTIRQNDPSAIIISN
                     DLANPPGESAPFLKLFQTVKATYTFVDPTTGKREQESKSFVVRGIIKQTGNPNIDNSA
                     VIDTEVGNALFHKSGKFDSLIVVARSGIYVDSIEQEIRKLYGNDIGITTVKAIIKTVQ
                     EFTGGISSFLLSIAIVSLVVGAVGIITTLYTSVIERTREIGTMKAIGAKGRHILALFL
                     TEALMIGIFGATCGILGGIVGAYILSAGFAGNDGASNQSQIAPIFLAADMTRVWLISS
                     ALSVLAGLFPALKASRLLPIVALKRE"
     gene            complement(3414..>3677)
                     /locus_tag="VFX26_03960"
     CDS             complement(3414..>3677)
                     /locus_tag="VFX26_03960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573662.1"
                     /translation="ATTSNKGQGFLGSYDTLLIIVILATIGIIAFIVVRRFRLKKKTG
                     IQNIEPEHKEENGSHDNDKGNDEDIESLLGGEDSTYKEHFQKK"
BASE COUNT         1172 a          665 c          661 g         1179 t
ORIGIN      
        1 aggtcccaga tacgatgttg aaagatttgg aataattgag gcatttggtt cattacgaca
       61 atgtgatttg attgttgttc aaggcactgt aacaagaaag atggctccaa ggctaaggat
      121 ggtttatgat cagatgccag atccaaaata tgttattgcc atgggtgcct gtgcaattac
      181 aggaggactt tatattgatt cttataacgt gctcccaggt gtagatggaa ttgtccctgt
      241 tgacgtgtat gtacctggct gtccaccaag acccgaaacc cttattcaag gatgtatgct
      301 gctccaagaa aaaataaaaa ggtcgaagat cagataaatc tgttaccttc aataatccta
      361 aatcttagaa tttatttatc aaactgtacg ctaattaacc tcaagaaatt gaggcaatgt
      421 attttattga tagccattta tgaataatct cattttgtta ccgttagctt aggtagtagt
      481 tcaggtaaca ttactatttg aggaaggtaa tgtacacaga gaagggttag aaaagtgctg
      541 atctaattag tattgagtct taagctccat tattatttgg tacaaacgca agcatgaata
      601 tgaatctaac attgttttga aattgatctt aaagttacgt cattctcctt ttggagtgat
      661 aatcatcaaa agatgcatgt agtattttga aagatagtcc ctcctcgtaa ggaccctttg
      721 atattgcttt taaaatgcct tgtttgactg aatctagcct attcttgtct gaaataatgt
      781 cctgcggaat ttcaatcttt aattccaata aaagtaatat atcttttgtt ttaaccaata
      841 gtaaaatgtt gaattaatac ttaatatgag ctttgcaatt ttaaggccta gtaagtaaat
      901 atagatattg acattcccaa ttaatagaaa tttttccaag ctgatactaa agttatttta
      961 gaagatgtcg tttccactcg taattacaat tcggagatgt aaactaacca acaaaaccct
     1021 ccctatttgt cagcgcaatt ttgaccatga cattgtaaga caaaaatata acaatttgca
     1081 ataagtatca tgaataagaa gtactaccaa ctatcttccg atctgactat ctgcagaata
     1141 gttaatggaa tgtggcaagt tgcaggtgga catggacaaa ttgatcatga attggcaatg
     1201 gcagatatgt taagatatca tgatgcggga tttactacgt gggatttagc tgatatctac
     1261 ggtccagcgg aagattttat aggagaattt aggcgtagat tatcaaaagc aaagggtaaa
     1321 gaagaactag acaagattca gtcgtttaca aaatgggtgc cacagccaag caggataaca
     1381 cgttctatgg tcaatagcag tatagagaca tcgattcgca gaatggatgt aagctcttta
     1441 gatttacttc aatttcactg gtgggattat aataatccgt attacatgga cgcgctaaaa
     1501 tatctatcag agctcaggga caaaggaagt attaagcatc tgggtctaac aaattttgat
     1561 actgatcatc tgcagatcat taccgattcg ggcgtaccaa ttgcatcgaa tcaggttcaa
     1621 tattcaataa ttgatagaag accagaagta aaaatgatac cgttttgcag aaaacataac
     1681 atcagcttac ttacttatgg aagtatttgt ggaggattat tgtctgaaag atacgtagga
     1741 aaaacagagc catctattac tgatctaaat acattaagct tgcaaaaata caaaaaaatg
     1801 atagatacat ggggcaattg gaatttgttt caaaagcttt tattggtttt agacaacatc
     1861 gcaaagaaac atagagcaag tatcgcaaat gttgctacta actacatcct ttccaaagct
     1921 acggttgcag gtgttattat tggtgtaaga ctcgggataa ttgatcatat agatgataac
     1981 agtaatgttt tcagcttcaa tttggatgac tcggatcttg aatcgattaa tcaagtatgt
     2041 gagaacgcaa ataatctata tgagattatt ggtgattgtg gtgaagagta tagataatta
     2101 gtccgttttc taaagaaaaa accgaaaaga tttcaatcct attctctttt taacgcaaca
     2161 attggaagta atctggatgc ttttaaggca ggaaacaaac ctgctagtac gctaagcgca
     2221 cttgaaatca accacaccct cgtcatgtca gcggccagaa aaataggagc tatttgtgat
     2281 tggttcgatg ccccatcgtt accagcaaaa cctgcgctca aaatataagc accaacaatt
     2341 cctcccaata tgccacacgt ggccccaaaa attccaatca ttaatgcctc ggtcaaaaac
     2401 aaggcaagta tgtgtctacc ttttgcaccg attgctttca ttgttccaat ttcgcgtgtc
     2461 ctttctataa ctgatgtata tagagttgta ataattccca ctgcacctac aactaaagac
     2521 actattgcta tgcttaaaag aaatgaacta atccctcccg taaactcttg cacagtcttg
     2581 atgatagcct taacagttgt aattccaata tcgttaccat aaagctttct aatttcttgc
     2641 tcgattgaat ctacataaat tcctgatcta gcaactacga ttaatgaatc aaattttcca
     2701 gatttatgaa ataatgcatt gccaacttca gtatcgatta ctgctgaatt atcaatgttt
     2761 ggatttcctg tttgctttat tattcctctt acaacaaaac tttttgattc ttgttctctc
     2821 ttgcctgttg tagggtctac aaaagtgtat gtagccttaa cggtctgaaa caactttaaa
     2881 aatggagcag actcaccagg aggattggcc aaatcatttg aaataattat tgctgaggga
     2941 tcattttgtc gtatagtaga gccttcgaca aattccagcg taggagaaag taccgttagt
     3001 ttctgaggat ccatagagaa tacttgatac tcttttgagt ctccttgaga ttctaggatt
     3061 acttgagatt gatatgatgg aattacatca tcaacaaatg gtaaagattt taacctattt
     3121 tcaactgccg catttaatgt aatttttgga gttggtggtg gtccaacgac tggccctcct
     3181 ccaccttgct gcacctgggc tggatttatg aaaatgatat tggctgctag attacttagc
     3241 tgttggttaa aaaaaccacc aaatccagca ctaatacctc caacggccac cattaaacta
     3301 cttccgacca tcaccataat tatggtcaat atggatttag tttttctttc tttcaatgca
     3361 tcaaatgaca ttccaaaaat atctttaata ttcataattc tgctatctct tccttatttt
     3421 ttctgaaaat gctccttgta agtggaatcc tcaccaccca gaagtgattc aatgtcttcg
     3481 tcatttcctt tgtcattatc atgactgcca ttttcctcct tgtgttcagg ctctatattt
     3541 tggatcccag tctttttctt taatctgaat cttctaacaa ctatgaaggc aattatccct
     3601 atcgtggcta atattactat gattagtaat gtatcataac tgccaagaaa gccttgcccc
     3661 ttattacttg ttgtggc
//
LOCUS       DASUMD010000143        17608 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_706445, whole genome shotgun sequence.
ACCESSION   DASUMD010000143 DASUMD010000000
VERSION     DASUMD010000143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 17608)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17608)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17608
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_706445"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..503)
                     /locus_tag="VFX26_03965"
     CDS             complement(<1..503)
                     /locus_tag="VFX26_03965"
                     /inference="COORDINATES: protein motif:HMM:NF014099.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573663.1"
                     /translation="MLSNVQTDVEEINKKFKDIEERRNAIIKGTRDATILCSKAIVSM
                     HSHKKNESTEYIEKAKKLLKQFKELGKDDLQKYLYIAEQEFVEAYCLFSIAENSVIPG
                     KRSLEVSDTSYVMGLLDCIGEIKRMIIDKIRSEGTSNVNALFELMDKIYGTIYPLAVY
                     DNLMPGL"
     gene            658..1245
                     /locus_tag="VFX26_03970"
     CDS             658..1245
                     /locus_tag="VFX26_03970"
                     /inference="COORDINATES: protein motif:HMM:NF013987.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573664.1"
                     /translation="MAYQTQTYQTLVPANKRKMEYGLEHVYTRLNRIRRNRGYSFEHV
                     LVQKLNGRVWSARRLGGSSANLPDIIAVNNKESIFLSIEAKSGTADSLYVPSDQIQRC
                     FQIRDMFQVYKTAHVILAFKFMQKKRIREEGKTVYAHRKLQEYYKIADRYSKIKDLPV
                     IKCTYDGSTYEIRNSQARKCFLKDYLMPFSVNSIL"
     gene            1285..1971
                     /locus_tag="VFX26_03975"
     CDS             1285..1971
                     /locus_tag="VFX26_03975"
                     /EC_number="5.1.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate epimerase"
                     /protein_id="HEX5573665.1"
                     /translation="MTTEEQPITSEQMYSIEDNGYAIFGMKKLLMMENAGHGLADFVV
                     SEKGPILAGKKIISLCGTGNNGGDAMVASRHLSAQNGIEITVVLLGDMKNIKTEETTV
                     NWSIIQKMKSIEILTGPRVLELAKNKISDSDIIIDGIFGTGIKGEIREPFSSTIDLIN
                     ASNAYVVAVDIPSGLDPNDGTFHEKCVKANATVTFHRIKKGLTAKKEYTGKVHLEKIG
                     IPIEAEQGVV"
     gene            1974..2588
                     /locus_tag="VFX26_03980"
     CDS             1974..2588
                     /locus_tag="VFX26_03980"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX5573666.1"
                     /translation="MRIAQIPVGNMQNFSYVIYDEQNNIGVIIDPSWDLEKIFQFLEI
                     NKISTRYIINTHTHFDHVLGNDHVAEITKAEIMQHEKSTNKKDRSIRDQEIINIGHVE
                     LEVLHTPGHSEDSICLIVNKEAIITGDTLFVGNIGRVDLPGSSPEKMYDSLVKVADLD
                     DSLVVYPGHNYGNTPTSTILNERTSNPMLNFKTKEAFLKYMVNE"
     gene            2595..3689
                     /locus_tag="VFX26_03985"
     CDS             2595..3689
                     /locus_tag="VFX26_03985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00303 family protein"
                     /protein_id="HEX5573667.1"
                     /translation="MSKEFDIVCSHKSNVIEKFLTTNPIFVCVISYTETSQIPGITFA
                     GANPDLIKYTPAADSEFLYHGKCFSISGVPATPDGIPTPALLTRTALLLGKIPCLVVN
                     SGSKIDPKIPFISFGINHGKNIQYEAALELYETHQAFEYGKILGKQLSKSNDLVVLGE
                     SIPGGTTTALGVLTGFGIDANYKISSSMPNNPHDLKIHVVQEAIKNQKISDLMDPFKI
                     ISLLGDPMIPAVAGIATGAIQSECKVMLAGGTQMAAVLAFMSSLNVSFDKICIGTTSY
                     VTKDENSDLEFLVRTISPDIPILSVNPGLGKSTKNGLIMYDKGVVKEGVGSGGALIAL
                     ILKLNRSLDRDTFLRNIEEEYERNIENIMV"
     gene            complement(3740..5503)
                     /gene="glmS"
                     /locus_tag="VFX26_03990"
     CDS             complement(3740..5503)
                     /gene="glmS"
                     /locus_tag="VFX26_03990"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004360 - glutamine-fructose-6-phosphate
                     transaminase (isomerizing) activity [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HEX5573668.1"
                     /translation="MCSIIGYKGNEHASSVLIEGLKKMEYRGYDSVGIATIKSGKLLM
                     RKGVGKVSEVNKSLRLDELPGKLGIGHTRWATHGGIVDSNAHPHLACNSTIAVVHNGI
                     IENYDELKDELHRSGHEFSSETDSEVIAHLLEEYFEITRDIRLSMIFTCKRLVGSFAF
                     VAVFNSSTLCGARYDEPLIVGVGNDDYFLSSDILGFLNYTDRAIFLDNRDIVVINDSD
                     ISFFNFDGDRISRKITQVAWELGDADKGKYSHYTLKEIHEQSQTIVKSMEQDKKNLEK
                     FCDIITGAKNIYITGSGTSYHSALLAKQIFSKLKIHVETIMSSEFQYSSEMLDENSVL
                     LAISQSGETADVIQSVKSAKNMGVKVLSIVNIPTSSLARLSDSYLEVNCGPEIGVAAT
                     KSFTSQITLLYYVADIIGRKTNGISTSKELLTTTISQVLELDSQIESVANQIKGLKDV
                     YILGRSLHFPICLEGALKIKELSYIHAEGMAAGELKHGPLALIDNNSIVIVIHPNDST
                     YIDTLSNIHTIKSRGAKIVGISNKKNEIYDYQITIPTISEFLYPLIEVIPLQLLAYYL
                     SIGNNANPDYPRNLAKSVTVK"
     gene            5687..6655
                     /locus_tag="VFX26_03995"
     CDS             5687..6655
                     /locus_tag="VFX26_03995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573669.1"
                     /translation="MNRKSLVYSLDENAFTKEILILEKPSEIRILSNPIAWKIVNLLA
                     GRPMYPAQIAKELKIYEQSAYYYIRKLLTIRAIGQVETSFVRGGTAKLYKTEYAAFGI
                     EMNWGERKFENVKNGKINRNVRNFFEDFIVDGLFNGVIVVGAPDPHGPYRSSARDGHY
                     STQLAFFLGNFCSLPENFVVKLDVDAKSEKISRTENIISIGGPGTNIITSEFNRYLPI
                     RFDESNYWSGLIAPQGRTHTLDNHGLIAKIRNPFSEKVNIIIIAGVRSAGTKSAILAL
                     TNHGNEILKKFNQDDNWAVVVQGFDMDSDGKIDAIDIVDEVSTNSR"
     gene            complement(6670..7173)
                     /locus_tag="VFX26_04000"
     CDS             complement(6670..7173)
                     /locus_tag="VFX26_04000"
                     /inference="COORDINATES: protein motif:HMM:TIGR01018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HEX5573670.1"
                     /translation="MGDPRKPRKSYRRPRRIWNSDQLSSELYIIGSYGLRNKRELWKA
                     QTKVANFRNQARTLLALTLEDRQEKESLLLSFLNRLGLTSTASLDDILNLKIEDILDR
                     RLQTIVMRKMGLKSPFQARQVVIHGHVSIGNRKVNLPGYLVKKDDEPKILVHVVAPNK
                     PSEAAAS"
     gene            complement(7183..7770)
                     /locus_tag="VFX26_04005"
     CDS             complement(7183..7770)
                     /locus_tag="VFX26_04005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HEX5573671.1"
                     /translation="MSISEYRHILRIAGKDIEGSKKIIIALSQIKGLGYNLSQVILQS
                     LNISSNMRIGFLTEKEVSDIEAAIKNPSLIGIPNWYLNRRKDSDTGTDKHLLTSDLDF
                     TIANDIEREKTVYSWRGYRHMFGLRVRGQCTRTTGRKGGAVGVKKVTMRPTAGGPGAP
                     GEAKEAGAAAPSAESATTEASTPQSSAPKSPETKE"
     gene            7909..9552
                     /locus_tag="VFX26_04010"
     CDS             7909..9552
                     /locus_tag="VFX26_04010"
                     /inference="COORDINATES: protein motif:HMM:NF012385.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008134 - transcription factor binding
                     [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-interacting transcriptional regulator"
                     /protein_id="HEX5573672.1"
                     /translation="MITENFKDIVHKSYNSNPNYLETVPGLPENYKDIKTLEDLLSIN
                     YKHVSANDQLRGNLIIKLKRQQFPYSGIIGYDEDIVPSLNRAILSSHDILLVGQIGQA
                     KTKIAETVAKNLLSPIPTVEGSITNDIPTLIPESELVSLLNDKEITRARPEFYVSTET
                     EDKIRNNRLDTKIIWIDGPSRFKYLLATPDISVKDLVGQIDAIKIAKRGVEIYNMESY
                     SPGQLLLARHGVFCIDELPVLDPRKQVALLSVLQEGIYTTGSYPVIFKPDTRIISTAN
                     PIDYTHSGKIIEPLYDRLKSHIITRYPKKVYDEMMIMVQEANIANIRNIVLPIFILRT
                     LAEITRIARGHPEINHEKGVSVRMSIHSLEILISEAERVRGIINNIKAVPRFSDIYSI
                     RQTSKFELSEIDDSYENRMNILDTIISDAVKKICAHYVTDLPPEKLISLKNEFKINKT
                     FHVSQDITSNSKGPKSYQAQVSKFDSLRGIMDIVAVNIAQDQKHFEVALRENAINFDT
                     LKDTKDPEYLASVTELILEGLRFTDPPILDRKEGIYVHI"
     gene            9539..10885
                     /locus_tag="VFX26_04015"
     CDS             9539..10885
                     /locus_tag="VFX26_04015"
                     /inference="COORDINATES: protein motif:HMM:NF024909.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEX5573673.1"
                     /translation="MSTYSNNIKKFTYHSIFDFPEEKEDKAPTKSIPKSLLQDFLKVL
                     GREIMKEDQPKLEEIEQELQNLKKERENSQSDSDKSKSSRTESSIIAQLQQFGYIKDS
                     RKWLSKKGFFAVGGKLLEDVIKALNKGTIGLHETTFSGSGSLNLDSTKKYEPSDDLRL
                     INVPRSLLNAIQRRSGSRSSIQLPIDLQPDDLEVYETKREVSVAVVYCIDLSSTMRYS
                     TMFGDMSRIEAAKKALWSLFLLNQKFFPSDSIRIVGFGALASKISPYDIPYLKTFDSG
                     VGFMHYTNYQAAFRLAKKILQNETTVNKKIVLVTDGHPSACFIDTEQERNKILCERPY
                     SQFYALDKEALNSTKQKQDLSLDTKSGKLVYLCYRYRQVDQYIGEKTILEARKCHKLG
                     IDIDTIMVSEEDSLLSYVNELEKYVKGRSYYINPAEIDKILITDYLNDKKSILRSK"
     gene            10933..11742
                     /locus_tag="VFX26_04020"
     CDS             10933..11742
                     /locus_tag="VFX26_04020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HEX5573674.1"
                     /translation="MTKYSSNSNYFDWNDSFNIIKKAYDSSLFVLIIGPKGTGKTSLV
                     RKFASDNEKPLYSINFSLRTRESHLVGTKTMNQGEVTFVEGILIKSMRDGGILYLDEL
                     NAAEADVLLRLDEALDDRRQIVLKEADGQVINALDNWFVFATINPLSHEGTKELPPQI
                     LSRFPVRLRLEYPPKEIEKQIIKYHVNFDSSQESDIDNALKLANSLREAASLEELYYS
                     PSIRESIAFARLLTNQVSPKKAAEVVYANVYDQWGEVEYRKVMDMITSIFV"
     gene            11747..13327
                     /locus_tag="VFX26_04025"
     CDS             11747..13327
                     /locus_tag="VFX26_04025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vWA domain-containing protein"
                     /protein_id="HEX5573675.1"
                     /translation="MSFSYVQNFSLRNDVLINLGTFLSRRWSGNNKAIILLIEDKPPT
                     TNLEKNTISMPSLRYYSGTEFQKYRQWRVSLWYESMRLAHSTKALSNDHAFGFILNSI
                     ELKRVEILGLREWRGMENEVIFNEGISWLSRPLLNSLYGKHKVVEAFSQSLITGYVKG
                     ELFGSESDRVQSAVNIAVELIDESIEKNYRTEWIERQIPKIIKTLQIDSLFTIPIVTL
                     RSKIGLSMTEKNLLKEIEKMIKIRNKEMEKSSNDIIAGAQILGEYESLVKESKKTDNK
                     GYSAMEQFGLEVPDSVGIDESIIYDNDLITKLKSVIRSWKRGWREIHDMTGDEIDVES
                     IIESQPKPFLTDFKNTINTKIALLLDHSSSIDEYELEYKKATVALCEALKFLNVKFSA
                     YAFSTKNKKVTCWVIKHPDVKWTSINARNLVQIKASGGTPLAEIYNLLLPLMKTYKPD
                     IMITLTDGEPSDYNAVRSTIKTYKLNGIHMVAVGMGKTVNNAINIGLNLKYLEYERTL
                     VVSQLDEIPKRVLSLLQV"
     gene            complement(13377..14039)
                     /gene="fsa"
                     /locus_tag="VFX26_04030"
     CDS             complement(13377..14039)
                     /gene="fsa"
                     /locus_tag="VFX26_04030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016832 - aldehyde-lyase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HEX5573676.1"
                     /translation="MKIFLDTASIESIKKFVDMGVVDGITTNPTLISREKGHPEDIMR
                     EIVKIVKGPVNLEVVGTKTQEMVEEGLRLKKFGENVIVKVPMTMDGLKAVRKLGENKI
                     KTNVTLIFSSNQALLAAKAGASYVSPFIGRLDDAGQVGMTVIEEIVKIFGNYGYQSEV
                     LVASVRHPIHVIEAGKLGAHIVTLPPDILGKMLTHPLTDKGLSLFLSDWEKVKKEHKY
                     TI"
     gene            complement(14036..15010)
                     /locus_tag="VFX26_04035"
     CDS             complement(14036..15010)
                     /locus_tag="VFX26_04035"
                     /inference="COORDINATES: protein motif:HMM:NF014798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase family protein"
                     /protein_id="HEX5573677.1"
                     /translation="MQLSDKNIISDMRTAYGKTLVEIGSKDPNIVCVGADTTDSLKTK
                     LFGDKFPNRLYNVGIAEANLVSIAAGLAIAGKVVFASTYAAFLPGRCLDQIRNTICYP
                     FLNVKLVVSHAGLTVGPDGASHQQIEDISTMRTIPNMRVLVPSDSIAVKNLIPLLSYT
                     PGPFFMRLARPSNSNIYEDNFEQFDIGKGNVIRDGSDITLIACGLMVSKAIDAAQALE
                     KEYAVSCRVIDMYSIKPIDVDLVYHAAVDSGAIVTIEEHSIIGGLGSAVCEVTAENHP
                     VPVNRMGIGDIFGESARETEIESLLSKYGLSSDHIIESVLKSRKRIKK"
     gene            complement(14997..16637)
                     /locus_tag="VFX26_04040"
     CDS             complement(14997..16637)
                     /locus_tag="VFX26_04040"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: protein motif:HMM:NF012670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEX5573678.1"
                     /translation="MALKMRYLELNRKVRDVRMLAIQGIAEAGSGHPGASFSAAEIMG
                     VLYFHKMKHKPSDPLWEGRDYFVNSKAHSAPGFYAVLATAGYIDTKEIKTLRKLGSRL
                     QGHPVMYSERQKNHSFPGIEYSGGSEGIGLSVSIGIALAKKRDGQKNRVYTLIGDGES
                     NEGQIWEAAMAASKFKLDNLVAILDRNKIQQDGFTEEIMPLDPVRDKWAAFNWNVVEV
                     NGHKIEQIIDALSRVEKVEDKPSIIIANTTKGKGIKHMANNPQWHGKAPPKKHVPILL
                     EELQSEILIAPSIIAGEPENYEEKVRRAERAGADLIHLDIMDGKFVPTTSFFADTIKH
                     LRKISSIPFDAHLMIEKPINHVIEYIDAGCDIITVHVEACNESEFVEINKMLLKAGIS
                     PGIAINPGTKFPSWIIEHLDNIDVMIIMSVNPGFAGQKFIPEALDKMAEVVKTLKSNN
                     YKGFIEADGGIDATTLQQVFDAGARIMVAGNAVYGSPDINSNIIQLRHKANVAIETKL
                     LELATINDMRSDWIKSRKNMLIPLAKELSIEEDLHAIK"
     gene            16907..>17608
                     /locus_tag="VFX26_04045"
     CDS             16907..>17608
                     /locus_tag="VFX26_04045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-binding protein"
                     /protein_id="HEX5573679.1"
                     /translation="MSEYEDLKTGDIVAEALIDWGVDVVFGIPGDSINGFIEALRVRK
                     DKIKFVLVRHEESAALMACGYAKYTGKLGVCTSIAGPGAIHLLNGLYDAKADNTPVIV
                     ITGGTSTDLMNSSFQQDVNLMNLFSDVSVYNSMIGSPRQAEMAVDIACRTAYVRKGVS
                     HLNIPNDVQEQKLEGHYSRHKVPGHTSDIFVTPTSADKRLIEKTAEILNNGKKIVILV
                     GQGALNASEEVIDVAQ"
BASE COUNT         5802 a         3188 c         3207 g         5411 t
ORIGIN      
        1 cttaatcctg gcattaagtt atcatatacc gccagtggat atattgtacc ataaatcttg
       61 tccattaact caaataatgc atttacattt gaggtacctt cagatctaat tttgtcgatg
      121 atcattcgct ttatctcccc aatgcagtcc aagagtccca taacgtatga agtatcggat
      181 acttcaagtg atcttttgcc tggaataaca gagttttcag caattgaaaa aagacagtat
      241 gcctcaacaa attcctgctc tgcaatgtac aaatattttt gaagatcatc ttttcccagt
      301 tccttaaatt gcttcaataa ttttttggcc ttttcgatat actctgttga ttcatttttc
      361 ttatgtgagt gcatggagac tattgcctta ctgcagagta ttgtggcatc acgagttccc
      421 ttaataatgg cattccttct ctcctctata tccttgaatt ttttattgat ttcctctaca
      481 tcagtttgaa cattcgataa catcaagaaa gatgattatt gccaatatat ttaataatta
      541 tttgaaatgc tcgccaatac atatttagaa taactcttgt ataatatttc gaaacatgtt
      601 tgttcaaaag tttcattctt tctgaattaa atactagttc gtggaatgca aaatatcttg
      661 gcgtatcaga cacagaccta ccagacactc gtacctgcta ataaaagaaa aatggaatat
      721 ggcttggaac atgtttacac cagactaaat aggattagaa gaaatagggg ctatagtttt
      781 gagcatgtgc ttgtgcaaaa actaaatggc agggtttgga gtgcaagacg tttaggaggt
      841 tctagtgcaa acttaccaga tattatcgcc gtaaataaca aagaatcgat attcctgtcg
      901 atagaagcta aatcgggtac tgcagatagt ctttatgttc cgtctgatca aatccaaaga
      961 tgttttcaga taagagacat gtttcaggta tacaaaacgg cccatgttat cttggccttt
     1021 aaatttatgc aaaaaaaaag aataagagaa gaaggaaaaa ctgtttatgc ccacagaaag
     1081 ttacaagaat actacaagat agcagatagg tattctaaaa taaaagacct accggtcata
     1141 aaatgtactt acgatggtag tacctatgaa ataagaaata gccaggcgag gaagtgtttc
     1201 ctaaaagact acctcatgcc ttttagcgta aattctattc tgtagctcac aatttttatt
     1261 tctcgtttat tcatctaaca attcatgacc acagaagaac aacctattac ttctgaacaa
     1321 atgtatagta ttgaagataa cggatatgct atttttggca tgaaaaaatt actgatgatg
     1381 gaaaatgcag gacatggact ggcggacttt gtcgtgtctg aaaaaggacc tatccttgct
     1441 ggtaagaaaa taatttctct atgcgggact gggaataacg gaggagatgc catggtcgcc
     1501 tctagacatt tatcagccca aaatggaatc gagattacgg ttgttctttt aggtgacatg
     1561 aagaatataa aaactgaaga aacaacggtc aactggtcga ttattcaaaa aatgaaatca
     1621 atagaaattc tcacaggacc gcgtgttctc gagttggcaa agaacaagat atctgactct
     1681 gacataatta ttgatggcat ttttggtact gggataaaag gagaaataag ggaacctttt
     1741 tcgtcaacaa tcgatttaat aaatgcttca aacgcttatg ttgtcgcagt tgatattcct
     1801 tctggacttg atccaaatga tggaacattt cacgaaaaat gcgtcaaagc taatgctaca
     1861 gttacctttc atagaatcaa aaagggctta acagcaaaga aagaatatac aggcaaggtt
     1921 catcttgaga aaattggaat tccaattgag gcggaacaag gggtggtctg attatgagaa
     1981 ttgctcagat tccagtagga aatatgcaaa atttttcgta tgttatttat gatgagcaaa
     2041 ataacattgg agttatcata gatccttcat gggatcttga aaaaatcttt caatttttag
     2101 agataaataa gatttctaca agatacataa taaataccca tacacatttt gatcatgtat
     2161 taggaaacga tcacgttgct gaaattacaa aagctgagat aatgcaacat gaaaaatcta
     2221 ctaacaaaaa agacagatca atacgcgacc aggagattat taatattgga catgtagaat
     2281 tagaggtttt gcatactcca ggtcattcgg aagatagcat ttgcctaatt gtaaataaag
     2341 aagctattat aacaggagat actctattcg ttggaaacat tggcagggtt gatcttcctg
     2401 ggagcagtcc cgaaaagatg tacgatagtc tagttaaagt tgcagattta gatgattcat
     2461 tggtagtata ccctggtcac aattacggta acacgccaac atcaacaata ctaaatgaaa
     2521 gaacaagtaa tccaatgctt aatttcaaaa ccaaagaggc gttcttgaaa tacatggtca
     2581 atgagtaata ggacatgtct aaagaatttg atatagtatg ttcccataag agtaatgtaa
     2641 ttgaaaagtt tcttaccaca aaccccattt ttgtatgtgt catatcatat acagaaacta
     2701 gtcagattcc aggcataact tttgcaggag caaaccctga tctcattaag tatacgccgg
     2761 cagctgattc tgaatttctt tatcatggaa aatgtttttc aatttcagga gtacccgcga
     2821 ctcctgatgg gataccgaca cctgcattat tgacaagaac ggcactgtta cttggaaaaa
     2881 taccatgctt ggtggtaaat tctggctcca aaatcgatcc taaaattcca tttatttcat
     2941 ttggaattaa ccatggcaaa aacatccagt atgaagcagc cctagaactc tatgagacac
     3001 atcaggcatt tgagtatggc aagattctgg gcaagcaact atccaagtca aatgacttgg
     3061 ttgttctagg agaaagcatt cctggtggaa caactacagc tcttggagta ttgacaggat
     3121 ttggaattga tgcaaattac aaaatcagca gtagtatgcc aaataatccg catgatctaa
     3181 aaatccatgt agtgcaagaa gccatcaaga atcaaaaaat atcagatttg atggatccct
     3241 tcaaaataat ttcattgctg ggtgatccaa tgataccggc cgtggccgga attgcaacgg
     3301 gtgctattca atctgaatgt aaggtaatgc ttgcaggtgg tacacagatg gctgcagttc
     3361 ttgcattcat gtcttctcta aatgtctctt ttgataaaat ttgcataggg acaacttcct
     3421 atgttaccaa agatgaaaat tcagacctag aatttctagt aaggacaatt tctccagata
     3481 ttcccatttt atccgtaaat ccgggcttag gcaaatcaac aaaaaatgga ctaataatgt
     3541 atgacaaggg tgtcgtaaag gaaggggtag gatctggtgg tgccttaatt gcattaatat
     3601 tgaaattaaa tagatctctt gatagagata cttttttgag aaatattgaa gaagaatatg
     3661 aaaggaatat tgaaaatatt atggtgtgat tgaatagtag ttgcctttaa gttcgtattg
     3721 aattcaactt tagtctaaat tattttactg tgacagattt tgcaagatta cgcggataat
     3781 caggatttgc attgttacca atagaaagat aataagccaa aagctgcagt gggattactt
     3841 cgatcagtgg atagaggaat tcacttatcg ttggaatagt tatttggtaa tcgtatattt
     3901 cattcttctt gtttgaaatg ccaactattt ttgcgcctct tgattttatt gtatgaatgt
     3961 ttgataatgt atcaatataa gtagagtcat ttggatgaat gactattact atgctattgt
     4021 tatctattag tgctaaggga ccatgtttta attcaccagc agccattccc tcagcatgaa
     4081 tgtacgacaa ttccttaatc tttagagctc cttcaagaca tatcggaaaa tgtagagatc
     4141 gaccaagtat gtagacatcc ttcaaacctt ttatctgatt tgcaacactt tcaatctgcg
     4201 aatccagttc tagtacctga cttattgttg tagtcaaaag ctccttactt gtggatattc
     4261 catttgtttt tctaccgata atgtccgcaa cgtagtacaa caacgtaatt tgacttgtga
     4321 aactcttcgt tgcagcaaca cctatttcag gcccgcagtt aacttccagg taagaatcac
     4381 tcaatctagc aagagaggaa gttggaatat taactatcga gagtacttta actcccatat
     4441 tctttgcaga ttttacagat tgtattacat cagcagtttc accactttga gatatcgcca
     4501 gtaggactga attttcgtcc aacatttcag atgaatattg aaattcactt gacattatag
     4561 tttcaacgtg aatctttaat tttgaaaaaa tttgttttgc tagtaatgca gaatgataac
     4621 ttgttccact tccagtaata tagatatttt tggcacctgt gatgatatcg cagaatttct
     4681 ctaaattctt cttgtcttgt tccatgctct ttactattgt ttgactctgc tcatgaattt
     4741 cctttaatgt atagtgggaa tactttcctt tatcagcatc accaagctcc caagcaactt
     4801 gtgttatttt tcttgaaatt ctatctccat caaaattgaa aaaagagata tcactatcgt
     4861 tgattacaac tatgtcacga ttatccagaa aaattgcacg gtctgtgtaa ttcaaaaatc
     4921 ctagaatatc actagacaga aaatagtcat cgttaccaac tcctactatg agtggttcat
     4981 catatctagc cccacacaaa gttgatgagt taaatactgc gacaaatgcg aaggaaccta
     5041 ctaatcgctt gcatgtaaag atcatggata atcgaatatc tctagtaatc tcaaaatatt
     5101 cctctaaaag gtgagcaata acttcactgt cagtctcact actgaattca tgacccgacc
     5161 tgtgcagttc atctttcagt tcatcataat tttcaattat accattatgc acaacagcga
     5221 tggttgagtt acaggcaaga tgaggatgtg cattagagtc aacgatacct ccatgcgttg
     5281 cccaacgcgt atgtccaatt cctaatttac caggtaattc atcaagtctt aaggacttgt
     5341 tgacttctga aactttaccg actcctttac gcatcaagag tttccctgat ttaatggtcg
     5401 caatacccac actatcgtat cctctatatt ccatcttttt gaggccttca attaatacgg
     5461 aagaagcgtg ttcattgccc ttgtatccaa ttattgaaca cataacacta ttctacaatt
     5521 taatttggtt taaaataatt actaacatca caagttacca ctacaaaaaa aaatataacg
     5581 cttttgaaga atcatgcgct tcttaaaagt aaacaaattt taccatatta tgatacctta
     5641 cataccggac aagattaata tataatagtt aaccaatcat tgattgatga ataggaagag
     5701 ccttgtgtat tctttggatg aaaatgcatt tacgaaggag attctaattc tcgaaaaacc
     5761 tagtgaaata cgaattttgt caaatcccat agcgtggaaa attgtaaatt tattggcagg
     5821 tcgtcctatg tatccggctc aaatcgcaaa ggaacttaag atttatgaac aaagcgcata
     5881 ttattacata aggaaattac taaccattag agctattggt caagttgaaa catcattcgt
     5941 acgtggtggc actgcgaaac tctacaaaac agaatatgca gcgttcggaa tagaaatgaa
     6001 ttggggagag aggaaatttg aaaatgtaaa aaatggaaaa attaatagaa acgtccggaa
     6061 tttttttgaa gactttattg ttgatgggtt attcaatggt gtgatagtag tgggtgctcc
     6121 agacccacac ggtccttacc ggtcgtctgc aagagatggc cactattcga cacaacttgc
     6181 ttttttcttg ggtaactttt gtagcctacc agaaaatttt gttgtaaaat tagatgtcga
     6241 tgcaaagtcg gaaaaaatat caagaacaga aaatatcata tctattggcg gccctggaac
     6301 gaatattatc acttcagaat ttaacaggta tttaccaata cgatttgatg aatccaatta
     6361 ctggtctggt ttgatagctc cacaaggaag aactcatacg cttgataatc atgggttaat
     6421 tgcaaaaatc agaaatcctt tctctgaaaa ggtaaacatc ataatcatag caggagtgag
     6481 atcggctgga actaaatcag ctatacttgc cttaacaaat catggaaacg aaatactaaa
     6541 aaaattcaat caagacgaca attgggcggt tgtagttcag ggctttgata tggattcgga
     6601 tggaaaaata gatgccatag atattgtaga cgaagtatct accaacagtc gttgagtaat
     6661 ttttagatgc taactggctg cggcttcaga tggcttgttt ggtgctacta catggactag
     6721 tatttttggt tcatcatctt tctttactag atatccgggt aagtttacct tcctatttcc
     6781 gattgataca tgaccgtgaa ttacaacttg ccttgcttgg aagggagatt tcaaacccat
     6841 ttttctcatc acgattgtct gcaatcttct atcaagtatg tcctcaattt tcaagttcaa
     6901 aatatcatct aaagaagcag tactggtcaa acctagccta tttaggaatg acaatagaag
     6961 cgattccttt tcctgtctat cttcaagggt cagcgcaagc agtgttcttg cttgattcct
     7021 aaaatttgca acttttgttt gtgccttcca caattctctt ttgttcctga gtccataaga
     7081 accgataata tacaattccg aacttaattg gtcagaattc catattcgcc ttggccttct
     7141 gtaacttttt cttggttttc ttggatctcc cattctgcct cactattctt tagtttctgg
     7201 agatttaggt gcactgcttt gtggagtcga agcctctgta gttgcagatt cggctgaagg
     7261 tgcagcagca ccggcttcct ttgcttcgcc aggagcaccg gggccaccgg ctgtaggtct
     7321 cattgtaacc ttctttactc caactgcgcc gccttttcta ccagttgttc gagtacattg
     7381 gcctctgact ctgagtccaa acatgtgtct atagcctctc caactataga cggttttttc
     7441 tctttcaata tcatttgcta tggtaaaatc aagatctgat gttaacaaat gcttgtctgt
     7501 gcctgtgtca ctatcttttc ttctgttcaa ataccaattt ggaattccta tcaaagacgg
     7561 attttttatt gcagcttcaa tatcgcttac ctctttttcc gttaaaaatc ctattctcat
     7621 attagaacta atattcaacg attgtagaat tacctgggac aaattataac ctaaaccctt
     7681 aatttgactt agggcaataa tgattttctt gctgccctca atgtctttac ctgctattct
     7741 taggatatgc ctatattcgg atatcgacaa tatttacgtc catcattttc cgaaataaaa
     7801 accatgctga catatgcgaa aggaaactac aagagtcaag gtattatgac aaaaccaaaa
     7861 taagctttga aagctttaaa tttgttggta gatcgagctg atgaataatt gattactgaa
     7921 aattttaagg acattgttca taaaagttat aattcaaatc ctaattatct cgaaacagtt
     7981 ccaggtttac ctgaaaacta taaggatata aaaacactcg aagatttact atcaatcaat
     8041 tacaaacatg tatctgcaaa tgatcaactt agaggaaatt taatcataaa actgaaaagg
     8101 caacagtttc catattcagg aatcattggt tatgatgagg acatagttcc gtctcttaat
     8161 agagcaatac tttcttctca tgacatacta cttgtgggtc aaattggaca ggcaaagacc
     8221 aagattgcag agactgtagc aaaaaattta ctctctccaa ttccgactgt ggaaggatct
     8281 attacaaatg atattccaac tctaattcca gaaagtgaac ttgtatcatt attaaacgac
     8341 aaggagatca cacgagctag accagaattt tatgtttcta ctgaaaccga ggacaagata
     8401 agaaataaca gacttgatac caaaataatc tggattgatg gacccagtcg cttcaaatac
     8461 cttcttgcta caccagatat ttctgtaaag gatctggtgg ggcagattga cgcaataaaa
     8521 atagcaaaaa gaggagtaga gatatacaat atggagtcat attcacctgg tcagctactc
     8581 ctggccagac acggtgtatt ttgtattgac gaattacctg tgcttgaccc cagaaaacag
     8641 gtagccttac tgagcgtctt gcaagaaggt atctacacta ctggttccta tcctgtgata
     8701 ttcaaaccag atacaagaat aatctctact gcaaacccaa tagattatac ccattcgggc
     8761 aaaataatag aaccgcttta tgatagattg aagagtcata tcattactag atatccaaaa
     8821 aaggtttacg atgaaatgat gataatggtt caggaagcaa acattgccaa tataaggaac
     8881 atagtgttac cgatatttat cttaagaact ctagctgaaa ttactaggat tgctcgggga
     8941 catcccgaaa taaatcatga aaagggagtg agtgtaagaa tgtctattca ttcattagag
     9001 atcttgatat cagaagctga acgagtaaga ggcataatta ataacatcaa agctgttcct
     9061 cgttttagtg acatttattc aattcgtcaa acttcaaaat ttgaactttc agagatagat
     9121 gatagttatg aaaacagaat gaatattttg gatactataa tatctgatgc agtcaaaaaa
     9181 atatgtgcgc actatgtcac agaccttcct cctgaaaaac taataagtct aaagaatgaa
     9241 ttcaaaatca ataagacttt tcatgtctct caagacatca ccagtaacag caagggtccc
     9301 aaaagctatc aggcacaggt aagtaagttt gattcattaa ggggaataat ggatattgtg
     9361 gcagttaata tagcacaaga tcaaaagcat tttgaagtgg ctctaagaga aaatgcaata
     9421 aattttgaca ctcttaaaga cacgaaagat cctgagtatc tcgcatcagt aactgaatta
     9481 atactagagg gccttaggtt tacagatcca ccaatattgg ataggaagga aggtatctat
     9541 gtccacatat agtaataaca tcaagaaatt tacttatcac agtatctttg actttccaga
     9601 agaaaaggaa gacaaggctc caacaaaatc aattccaaag agtttactcc aagattttct
     9661 taaagtcttg ggcagggaaa taatgaaaga agatcaacca aaactggaag aaattgagca
     9721 ggaactacag aacctgaaga aggagagaga aaatagtcag agtgattcgg ataaatctaa
     9781 atccagtagg acggaatcat caataatagc ccaacttcag cagtttgggt atatcaaaga
     9841 ttcaagaaaa tggctaagta aaaaaggatt ttttgcagta ggaggaaaat tgctagaaga
     9901 tgtaattaaa gctcttaata aaggaactat tggactgcat gagactacat ttagtggtag
     9961 cggttcgtta aatttagatt cgacaaaaaa atacgaaccg tctgacgacc tgagattaat
    10021 taatgttcca agatcattat taaatgctat tcaaagaaga tctggttcca gatcatctat
    10081 tcaattgcca attgacctac aaccagatga tttggaagtt tatgaaacaa agagagaagt
    10141 tagtgttgca gttgtttact gtattgactt gagttctact atgagatatt caacaatgtt
    10201 tggggacatg agtagaatag aggcagcaaa aaaagcatta tggagtttgt ttttattaaa
    10261 ccaaaaattt ttcccgtcag attcaattcg tatagtaggt tttggggctt tggcctcaaa
    10321 gatatcacca tacgatatac catatctcaa gacttttgat tcaggcgtag gctttatgca
    10381 ctataccaat tatcaggccg cttttagact ggcaaagaaa attctacaaa atgaaaccac
    10441 tgttaacaag aaaattgtcc ttgtgacaga tggccatcct agtgcctgct tcatcgatac
    10501 agaacaagaa cgaaataaaa tattatgtga aagaccctat tcccaatttt atgctcttga
    10561 taaggaagca ctaaattcaa caaagcaaaa acaggactta tcacttgata ctaaatcagg
    10621 gaaattagtt tacctttgct atagatatag acaggttgac caatatatcg gtgaaaagac
    10681 aattctggaa gcacgaaaat gtcataaatt aggaattgat atagatacaa tcatggttag
    10741 tgaggaagat tctttgttaa gctacgtaaa tgagttggaa aagtatgtca aggggagatc
    10801 atattatatc aatccagctg aaatagataa gattctaatt actgattatc tgaatgacaa
    10861 aaaatctata ttaaggtcta aatgaaaatc aacaattagt ttttatttac atgttctaaa
    10921 aatagataat gaatgacaaa atactcatcc aactccaatt attttgattg gaatgattcg
    10981 tttaatataa ttaagaaagc atatgattcg tcactttttg tacttataat aggaccaaaa
    11041 ggcactggta aaactagttt ggttagaaaa tttgcttcgg ataatgaaaa gccactttat
    11101 tcaattaatt tcagtttaag aacccgcgaa tcgcatttgg ttggaactaa aaccatgaat
    11161 caaggagaag ttacatttgt agaaggcatc ttgatcaaat ccatgagaga cggtggaatt
    11221 ctatatcttg atgaacttaa tgcagcagaa gctgatgtac ttctgcgact tgatgaagca
    11281 cttgatgata gacgacagat tgtattgaaa gaagccgatg gtcaagtaat caatgcattg
    11341 gataattggt ttgtttttgc tacgatcaac ccactatctc atgaaggaac aaaggaatta
    11401 ccgccacaaa tactaagcag atttccagta agactacgac tcgaatatcc acccaaagaa
    11461 attgagaagc agattataaa ataccacgta aactttgact cttcacaaga gagtgacatt
    11521 gacaatgcac ttaaactggc caatagtctg agagaagcgg cctcattgga ggagctatac
    11581 tacagtccca gcataagaga gtctatagca tttgcaagac tgttgacaaa tcaagtatct
    11641 cccaagaaag ctgcagaagt agtatatgct aatgtttatg atcagtgggg agaagtagaa
    11701 tatagaaagg taatggacat gataacttca atttttgtgt aagaaaatgt ccttctctta
    11761 tgttcaaaac ttttctttgc gaaatgatgt actaataaat ctaggtacgt ttctttccag
    11821 aagatggtct ggaaataata aggcaattat tttattgata gaagacaagc ctcccactac
    11881 aaatttagaa aaaaacacca tctccatgcc atcattaaga tattatagcg gaacagaatt
    11941 ccaaaaatat cgtcagtggc gcgtttcttt gtggtatgaa tcgatgcgat tggcacactc
    12001 aactaaagct ctaagtaatg accatgcttt tggatttatc ctaaactcaa tagaattgaa
    12061 gagggtagag atattaggat taagagaatg gagaggcatg gagaatgaag taatctttaa
    12121 tgaaggaatt tcttggttat cgcgtccttt attgaattcg ttatatggta agcataaggt
    12181 tgtggaggca ttctctcaat cccttattac tggttatgtc aagggtgaat tgttcggatc
    12241 agaatcagat agggtacaga gtgcagtgaa cattgccgta gaattaattg atgaatcaat
    12301 agaaaaaaac tatagaaccg aatggataga acggcaaatt cccaaaataa tcaagaccct
    12361 tcaaattgat tctcttttta ctataccaat tgttaccctt agaagtaaaa ttggattatc
    12421 aatgacagaa aaaaatctgc taaaagaaat agaaaagatg ataaaaattc gaaacaaaga
    12481 aatggaaaaa tcctcaaatg acattatagc tggcgcccag atattaggag agtatgaaag
    12541 tcttgtaaag gagagtaaaa aaacagacaa taagggttac tcagcaatgg aacaatttgg
    12601 attggaggtt cccgatagtg ttggtataga tgagagcata atttatgata acgatttgat
    12661 tacaaagctg aaatcagtca ttagatcttg gaaaagagga tggagagaaa tacacgatat
    12721 gacgggagat gagatagatg tagaatccat aattgaatct cagccaaagc catttctcac
    12781 tgatttcaaa aatacgataa ataccaaaat tgcactgtta ttagatcatt ctagtagcat
    12841 agatgaatac gaattggagt acaagaaggc tacggttgcc ctttgtgaag ctttgaaatt
    12901 tttgaatgtg aaattttctg cttatgcgtt tagtactaaa aacaaaaaag taacttgttg
    12961 ggttataaag catccagatg tgaaatggac ttctataaac gcacgtaatt tggttcaaat
    13021 taaagcaagc ggagggacac cactagccga aatttacaat ttgttgttac cgttgatgaa
    13081 aacatacaaa ccagacataa tgataacttt aactgatggt gaaccttctg actataatgc
    13141 tgtacgctct acaattaaga cctacaagtt aaatggaatt cacatggttg cagtgggtat
    13201 gggaaaaact gtaaacaatg caatcaatat tggtttgaat ctgaaatacc tagaatatga
    13261 aaggaccttg gttgttagcc aacttgatga aatcccaaag agagtcctat cacttttaca
    13321 agtttaagaa gctcgcgtca caattttcct attaattcta atcccgagaa ctaaatttat
    13381 atcgtgtact tgtgttcttt cttaactttt tcccaatctg aaagaaaaag agataagccc
    13441 ttatcagtaa gaggatgcgt tagcattttg cccaatatat caggtggaag agttacaatg
    13501 tgtgcgccca acttgccagc ctcaataacg tgaatcggat gtctcacact agcaaccaaa
    13561 acttcagatt gatagccata attgccaaag atcttaacta tttcctcaat tactgtcatt
    13621 cctacttgac cagcatcatc cagtcttcct ataaaaggac taacatatga tgccccagcc
    13681 tttgcggcca gcaatgcttg atttgatgaa aagatcaaag ttacatttgt cttgatctta
    13741 ttctcgccaa gttttcttac tgcttttaac ccatccatgg tcatgggaac cttcacaata
    13801 acattttcac caaatttttt taatcgcaat ccctcctcaa ccatttcctg agtttttgtt
    13861 ccgacaactt ccaaatttac aggacccttt acaattttta ctatctctcg cattatgtct
    13921 tcagggtgtc ctttttctct agaaatgagt gtagggttag ttgtaatccc atctaccaca
    13981 cccatatcga caaatttctt tatagattca atacttgcag tatcaagaaa aattttcatt
    14041 tttttattcg tttcctagat ttaagaacag attctataat atgatccgaa ctcaagccat
    14101 atttgcttag gagtgattct atttcagttt ctctggctga ctcgccaaaa atatctccta
    14161 tacccatcct gtttacagga acaggatgat tttccgccgt cacttcgcag acagcgcttc
    14221 ctaaccctcc tatgatacta tgctcttcaa tagtaacaat tgcaccacta tcgactgctg
    14281 catgatatac aagatcaaca tcgattggtt tgatagagta catatctatc actctacatg
    14341 atacagcata ttctttttca agtgcttgtg ctgcatcgat agcttttgaa accataagac
    14401 cacatgcaat cagtgttatg tcggaaccat ctctaataac gttaccctta ccaatatcga
    14461 attgttcaaa attatcttca taaatattgg aatttgaagg acgtgctagg cgcataaaaa
    14521 agggtcctgg agtataactt agaagtggaa ttaaattttt tacagctata gaatctgaag
    14581 gaacaagcac tctcatattt ggaattgttc tcattgtaga aatatcctca atctgttgat
    14641 gagaggcacc atcaggacca actgtaagcc ctgcgtgtga tactactaac tttacattaa
    14701 gaaacggata acaaatagta tttctaattt gatcaagaca tctgcctggt aagaatgcag
    14761 cataggtact tgcaaaaacc actttacctg caattgccaa tccagcagca attgaaacaa
    14821 gatttgcttc tgcaatccca acattgtata acctattggg gaatttgtca ccaaagagct
    14881 ttgttttgag tgaatcagtg gtgtctgctc cgacacaaac aatgttagga tcctttgatc
    14941 ctatttcgac taatgttttt ccgtatgcgg ttctcatatc agaaataatg ttcttgtcac
    15001 ttaattgcat ggagatcctc ctcaatgcta agttcttttg ccaaaggtat aagcatattt
    15061 ttacgagatt taatccaatc agatctcatg tcattaattg ttgccaattc caataatttt
    15121 gtttcaattg caacattggc tttatgcctc agctggataa tattcgaatt gatatctggt
    15181 gagccgtata ctgcattacc ggctaccata attctcgccc ccgcgtcaaa aacttgctga
    15241 agcgtagttg catcaatacc tccatcagct tcaataaatc ccttatagtt gttacttttc
    15301 agagtcttga ctacttcggc cattttatcc aatgcttcgg gaataaattt ctgaccagca
    15361 aaaccaggat tcactgacat gattatcatt acatctatgt tatcaaggtg ttcaattatc
    15421 caggacggaa acttagtccc cggattaata gcgataccag gactgattcc agcttttagt
    15481 agcattttgt taatttcgac gaactctgat tcattgcaag cctcaacatg aactgtaata
    15541 atatcacatc ctgcatctat gtattctatt acatgattga ttggcttttc aatcatcaaa
    15601 tgagcatcaa aaggaatact tgagattttt ctcagatgtt taatagtgtc ggcaaaaaat
    15661 gaagttgtcg gtacaaattt gccgtccatt atatccaaat gaataagatc tgcacctgct
    15721 cgctctgctc ttcttacctt ttcttcataa ttctcgggtt cacctgcaat aattgaaggt
    15781 gcgatcaaaa tctcgctttg aagctcttct agcaaaattg gaacgtgttt ttttggagga
    15841 gctttgccgt gccattgtgg attattagcc atatgcttaa tccctttccc cttggtggta
    15901 tttgcaatga ttattgatgg tttatcttct actttttcaa ctctgctcag ggcgtctatt
    15961 atctgctcaa tcttatgccc atttacctct acaacattcc agttgaatgc agcccatttg
    16021 tctctaacag gatccagagg cataatctct tctgtaaatc catcttgctg gatcttgttc
    16081 ctatctagga tagctaccaa gttgtctaat ttgaattttg aggctgccat cgctgcttcc
    16141 catatttgtc cttcgtttga ttctccatct ccaatcaaag tatagaccct atttttttgt
    16201 ccatctctct tttttgcaag tgcaattcca attgagacgg acaagcctat tccctcagat
    16261 ccacctgaat attctatccc tgggaaactg tgatttttct ggcgttctga atacatgact
    16321 ggatgtcctt ggagtcgtga accaagcttt ctgagtgttt ttatctcctt tgtatctata
    16381 tatcctgcag tagctaaaac cgcataaaat cctggcgcag agtgtgcttt agaattgaca
    16441 aaataatccc ttccttccca taaaggatca cttggtttat gtttcatttt atgaaaataa
    16501 aggacaccca ttatctcagc cgccgagaaa gatgctcctg gatgtcccga acctgcttct
    16561 gctatgcctt gaatagccag catcctaaca tctcgtactt tgcgattgag ttcaagatat
    16621 ctcattttca gagccattta gataccccaa atagaaccaa agactaccat cattggatat
    16681 atgttttaat cagaatgtac gataaaaaca tatggaatta tgactttgag atttttagac
    16741 tcattctcat caacttgatg aaactgctag gagttcatta tgtaatttct gacaaaatgc
    16801 gcaaacaaga aaggcaatat caagataatt caagaaaatg gtggctaaat catatgcaat
    16861 tcctgatgta tttagattta ttagaaataa agaccaatat taccatatga gtgaatacga
    16921 ggatctaaaa actggagata ttgtggccga ggcactcatt gattgggggg ttgatgttgt
    16981 ttttggtata cctggggaca gcattaacgg attcatagaa gccctaagag taaggaaaga
    17041 caaaataaaa ttcgtcttag taagacatga ggaatctgct gccttgatgg catgtggata
    17101 tgcaaagtat actggaaaac ttggcgtatg cacgtcaata gcaggtcctg gggcaatcca
    17161 tcttttgaac ggattgtatg atgccaaggc agataacaca ccggtaattg ttattacagg
    17221 aggaacatct actgatttga tgaattcaag ttttcaacag gatgtaaact tgatgaatct
    17281 cttttctgat gtttcagttt ataacagtat gatagggtca ccacgacaag cagaaatggc
    17341 tgtagacata gcatgtagaa ctgcgtatgt tcgtaaaggg gttagtcatc ttaacatacc
    17401 taatgacgta caggaacaaa agttggaggg acattattct agacacaaag ttccaggcca
    17461 tacttccgat atcttcgtaa cacctacatc agctgataaa agattaattg aaaaaactgc
    17521 agaaattttg aacaatggga aaaaaattgt gatcctagtt ggtcaaggtg cattgaatgc
    17581 ctcagaagaa gtaatagatg tagcacag
//
LOCUS       DASUMD010000144         9888 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_42949, whole genome shotgun sequence.
ACCESSION   DASUMD010000144 DASUMD010000000
VERSION     DASUMD010000144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 9888)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9888)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9888
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_42949"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..628
                     /gene="cofG"
                     /locus_tag="VFX26_04050"
     CDS             <1..628
                     /gene="cofG"
                     /locus_tag="VFX26_04050"
                     /EC_number="4.3.1.32"
                     /inference="COORDINATES: protein motif:HMM:NF004884.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="7,8-didemethyl-8-hydroxy-5-deazariboflavin
                     synthase CofG"
                     /protein_id="HEX5573680.1"
                     /translation="SERLTGKNMPHEFAPSKNPRARIRVLENAGKLKIPITTGLLIGI
                     GETLEEIVDSLIVIREINQKYGNIQEVIMQNHVPKDNTKMKNILPPTHDLFLLSISLA
                     RIIMPHMNIQVPPNLSPNHYSTFIDAGINDWGGISPLTIDFVNPESPWPDIKEVKQAT
                     NKAGYNFRGRLAIYPEFLLNKREFIPKNLWNYITPLSDSSGLVKEELI"
     gene            628..1872
                     /gene="cofH"
                     /locus_tag="VFX26_04055"
     CDS             628..1872
                     /gene="cofH"
                     /locus_tag="VFX26_04055"
                     /EC_number="2.5.1.147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-amino-6-(D-ribitylamino)uracil--L-tyrosine
                     4-hydroxyphenyl transferase CofH"
                     /protein_id="HEX5573681.1"
                     /translation="MLESMLKEIDPVVSDILNQSLDSKNISIKQAVELFHAKGTEMIM
                     TTMVADMLRRTKVGDEVTYVINRNINFTNVCIKRCGFCAYSRDFRNDEGYFLPISEVV
                     RRAEEASKLGATEICIQAGLPPKMDGLLYVDICKAIKKELPDIHIHAFSPEEVMYGCS
                     RSGLSVKEYLSMLKEAGLGSLPGTAAEILDQDLRDLISPGRISVADWINVITTAHGLK
                     IPTTSTIMYGHVETTEHKAKHLELIRSIQKQTGGFTEFVPLSFVHKEAPMYNHNLVNG
                     ISPGPTGQDVIKMHAVSRIMLNNFIDNIQVSWVKEGAKMSQLLLDAGVNDFGGTLINE
                     SISTSAGSEFGQLMKPKEIRSLITSAGRVPAQRNSVYGIIKVFDENNKEKESLLDEAE
                     ASKFGSYHELIRLDKFRYNHKK"
     gene            2088..2699
                     /gene="purN"
                     /locus_tag="VFX26_04060"
     CDS             2088..2699
                     /gene="purN"
                     /locus_tag="VFX26_04060"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004644 - phosphoribosylglycinamide
                     formyltransferase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HEX5573682.1"
                     /translation="MINLGILISGRGSNMESILNFLKENAIADVCPKIVISSKPEAEG
                     LKKATKFGIPTKVVSNNLKGWDYDKEIVNVLQEYEVNPENGLVCLAGYMRLLSPEFVR
                     TYKMRIMNIHPSLLPSFPGLNSQKKALDYGVKVTGCSVHFVDEGLDSGPIIAQKHVIV
                     SDNDTYETLSDRILEEEHILYPYCVKLFSERRLLVEGRKVVIT"
     gene            2788..3627
                     /locus_tag="VFX26_04065"
     CDS             2788..3627
                     /locus_tag="VFX26_04065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 5,10-methylenetetrahydrofolate
                     dehydrogenase/5,10-methenyltetrahydrofolate
                     cyclohydrolase"
                     /protein_id="HEX5573683.1"
                     /translation="MLVSQHLKQTIRNEVSALANKGIKPCLATVLVGNNQASATYVKN
                     KQIAASSVGILTRDFKLPENIFQDELVKTIDELNHDENVHGILIQLPLPNQIETSITN
                     MVNHEKDVDGLTSYNLGLLLEGTPKLIPCTPLGILELLDYYNINVMGIDVAIINRSNL
                     VGKPLGILLMNRDATVTFFHSKSKGMEDKLKNFDCIITAVGDRQKFTLTSNMVKDGAI
                     IFDVGISRINGKIQGDVDFKSVSERAGYITPVPGGVGPMTVTMLLKNTVHAASLINKI
                     SNH"
     gene            3632..4222
                     /locus_tag="VFX26_04070"
     CDS             3632..4222
                     /locus_tag="VFX26_04070"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR02727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030272 - 5-formyltetrahydrofolate
                     cyclo-ligase activity [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HEX5573684.1"
                     /translation="MKLDNQGQKSILRKEILHKRNSLSQFQIASISKLVQKNLIESPE
                     FIESKSIGIYLPIGSEVRTADIIRNALESKKTLLLPRVITNDLRFYIVEKKEFDQDSF
                     DINKFGVKEPKETNGNLDFFDLLIVPGIVFDYCGYRIGYGHGYYDKYMTNGKFSKAIG
                     IAYDLQVTKSPIPISEYDKKMDFLFTESGFHVFDTF"
     gene            complement(4181..5485)
                     /gene="purD"
                     /locus_tag="VFX26_04075"
     CDS             complement(4181..5485)
                     /gene="purD"
                     /locus_tag="VFX26_04075"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HEX5573685.1"
                     /translation="MNQYDTILIIGSGGREHSIGWKLLHDTKKKVFFAPGNGGTDNNI
                     EIDSNDLTKLCQFAKENNSFTIVGPEKPLSLGIVDLFEKNQLPIFGPSKSATRLESSK
                     VFAKLFMRDMGIQTASFSIFSGADAAINHVKSSSKNVVVKLDGLAAGKGVFVCDSEKS
                     AIQAIQKIFNDNEFRNSRNQILIEERIYGDEASFIVLCDGKSIVPLATSQDHKNIFDQ
                     DNGPNTGGMGSYCPTPLITEKMITKIMEKIMNPTLKGLNDKGIKFRGFLYAGIMIERG
                     SNEPYVLEFNVRMGDPECQTILSRMDSSFLECLEAAMDDKLDSMPPIRWKDRHSVCIV
                     MASRGYPGKYQTGKVIHGLNSKFDVDTYVFHAGTKKNSMGEIITNGGRVLSVTSLADT
                     LEGAKNKSYSAVSKIHWGDDEEYFRRDIASKGIKYMKSALSE"
     gene            complement(5855..6247)
                     /locus_tag="VFX26_04080"
     CDS             complement(5855..6247)
                     /locus_tag="VFX26_04080"
                     /inference="COORDINATES: protein motif:HMM:NF016050.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclophilin-like family protein"
                     /protein_id="HEX5573686.1"
                     /translation="MTWSNPNSVSRIHVLLEAGGKGKILLELVRHLSPITFSTIIKTM
                     PISGRLHFMEHKIGYVETGVTVGAEKQKSTFKRGDLGFMVSNGSICIMLQDTKGINMN
                     HIGHCIEDPLLLESIESGEIIFIKRDSR"
     gene            6338..6823
                     /locus_tag="VFX26_04085"
     CDS             6338..6823
                     /locus_tag="VFX26_04085"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:NF002207.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit K"
                     /protein_id="HEX5573687.1"
                     /translation="MVLRRSSAEKNKEKKLVKVKKQPKVKKDTGTKGKNPQEKEKKSK
                     KTKIEILETEEESKSGRPKDEVVVYPEMDFEAREITPQDSQVLIGPPTLTRFERARII
                     GSRSLQLSLGAPILIDSSKKFSDTISIAVAELDLKVLPISIRRVLPNGLYQDIPIDWL
                     K"
     gene            6973..8199
                     /gene="carA"
                     /locus_tag="VFX26_04090"
     CDS             6973..8199
                     /gene="carA"
                     /locus_tag="VFX26_04090"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005951 - carbamoyl-phosphate synthase
                     complex [Evidence IEA];
                     GO_function: GO:0004088 - carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HEX5573688.1"
                     /translation="MRVKIPTIHGNHLGLNAMIILEDGSTYRGTGFGYPKTVGGEFVF
                     NTGMVGYTETLTDPSYRGQILCLTYPLIGNYGVPSNSITDIYGLPKYFESDNIQVSGL
                     IVHELSTVANHRECHKTLDQWLYDEKIPGISGIDTRDLTKKIRIKGVMKGALSVSEKQ
                     INTKELLNTIKRTKYDGFNFMSQVSVDKTFEYGDPKLEPIVLIDTGTKYSIIRNILRM
                     GYRVIRVPWDMSFNKIISYKPKGIIISNGPGDPKMCNSTIDTVIKLFDSTLPILGICL
                     GNQIIALAAGGDTYKLKFGHRGQNKGCTDLNTNQTFITSQNHGYGVKSNTLNKTGFKA
                     WYINSDDNTIEGIKHESKPIIAVQFHPEASPGPYDCLHIFESFKDLVEQNGSNEKSNQ
                     IDRVNGGGKIYQRMKP"
     gene            8284..9888
                     /gene="carB"
                     /locus_tag="VFX26_04095"
                     /pseudo
     CDS             8284..9888
                     /gene="carB"
                     /locus_tag="VFX26_04095"
                     /inference="COORDINATES: protein motif:HMM:NF003671.0"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
BASE COUNT         3446 a         1613 c         1909 g         2920 t
ORIGIN      
        1 tagtgaaaga cttacgggca agaacatgcc acatgaattt gctcccagta aaaatccaag
       61 agctagaatt cgagttcttg aaaatgcagg taaattaaaa attcctatta caacagggtt
      121 actaattgga ataggggaaa cactagaaga aatagttgac tcattaattg taattaggga
      181 aattaatcaa aaatatggaa atatccaaga ggtaataatg caaaaccacg ttccgaaaga
      241 taataccaaa atgaagaaca ttttgccacc aacacacgat ttatttttac tcagtatttc
      301 cttagcaagg atcattatgc cacatatgaa cattcaggtc ccgcctaacc ttagtcctaa
      361 tcattattcc acctttattg atgcaggaat taatgattgg ggtgggatat ctcccttaac
      421 aattgatttc gtaaatccag agtcgccatg gcccgatatt aaagaagtta aacaggcaac
      481 caataaggca ggctataact ttagaggaag acttgcaatt tatccggaat ttctcttgaa
      541 caaaagagag tttatcccaa aaaatctttg gaactatatt accccattat cggatagttc
      601 tggattagtg aaggaggaat taatttgatg cttgagtcta tgttgaaaga gatagatccg
      661 gttgtttcag atatattaaa tcagtcactt gattctaaga atatatccat aaaacaagct
      721 gttgaattgt ttcacgcaaa agggaccgaa atgatcatga ctacaatggt ggctgacatg
      781 ttaaggagaa caaaagtagg cgatgaagta acttatgtta tcaacaggaa tatcaacttt
      841 acaaatgttt gcatcaaaag atgcggcttt tgtgcgtaca gtagagattt tagaaatgat
      901 gagggttatt ttctcccgat atcagaagtc gtgaggagag cagaagaagc atcgaaatta
      961 ggcgcaactg aaatttgtat ccaggcagga ttaccaccaa agatggatgg attattgtat
     1021 gtcgatattt gcaaggcgat aaaaaaggaa ttaccagata ttcacattca tgctttttcg
     1081 cctgaagaag ttatgtatgg gtgcagcaga tcaggacttt ctgttaagga atacttgagt
     1141 atgttgaagg aagctggatt aggaagctta ccggggacag ctgcagagat tctggatcag
     1201 gatttaaggg atctgatatc gccaggtaga atctcggtag ctgattggat taatgtgatt
     1261 accacggcac acggactcaa aattcctacg acatccacaa taatgtatgg tcatgtagaa
     1321 acaactgaac ataaggctaa acatttagaa ttgataagat cgattcagaa acagacagga
     1381 gggtttactg aatttgtacc cttgagtttt gttcataaag aagctccaat gtataatcat
     1441 aatctagtca atggtatttc accaggtcca acaggtcaag atgtgataaa gatgcatgct
     1501 gtttcgagaa tcatgctaaa taatttcata gacaatattc aagtttcgtg ggtcaaggaa
     1561 ggtgcgaaaa tgtctcaact acttcttgac gctggagtaa atgattttgg cgggactttg
     1621 attaatgaaa gcatttccac ctcggcagga tccgaatttg gacagctaat gaaacctaag
     1681 gaaataaggt cattgataac gtctgcaggt agagtacctg ctcagagaaa ttcggtgtat
     1741 ggaatcataa aagtatttga tgaaaataat aaagaaaaag aatcgttgct agatgaagca
     1801 gaagcatcaa agtttggttc ttatcatgaa ttgataagac tggataaatt cagatacaat
     1861 cataaaaaat gaacatatga ttttgtaggt cagcacttta gccatgacaa atgacagatt
     1921 tgcttatttt catattggaa caacatatag aacagtttga tagtaacaag ttgatattca
     1981 aagaaaaaga atcattacat tagtttactg ataataatta tattccaatt cgatacttgt
     2041 actttttcac tacatttaag aatctcaaac ttacacatta ggaacatttg ataaaccttg
     2101 gaatattaat ttctggaaga ggtagcaaca tggaatcaat cttaaatttc ttgaaagaaa
     2161 atgcgattgc agatgtttgt cctaaaatag taatctccag taaaccagaa gcagaaggtc
     2221 tcaaaaaggc tacaaagttt ggaattccca caaaggttgt ttcaaataat ttaaaaggtt
     2281 gggattatga caaggaaata gtaaatgtat tacaagaata cgaggtaaat ccagaaaacg
     2341 ggctcgtatg tttggctggt tatatgcggc ttctaagtcc ggaatttgta agaacataca
     2401 aaatgcgcat catgaatata catccatcac ttttgccatc atttcctgga cttaattcgc
     2461 aaaaaaaagc gctagattat ggagtaaaag taactggatg ctctgtccat tttgttgacg
     2521 agggattaga ttcaggacct attatagcac agaaacatgt gatagtatcg gacaatgata
     2581 catatgaaac actatcagac aggatccttg aagaagagca tattctatat ccttattgtg
     2641 taaagctttt ttctgaaagg aggttacttg ttgaaggtag aaaagtagtc attacttaac
     2701 agcgagagaa aatagtctgg tcgatatagt aaagcaaaaa aatgacgttg tgatttttta
     2761 aaatatttgg gcaaattaat agacggaatg ctagtgtctc aacaccttaa acagacgatc
     2821 agaaatgaag tatcagcttt agcaaataag ggaattaaac cttgtttagc taccgtttta
     2881 gttggcaata atcaagcatc tgccacatat gttaaaaata agcaaatcgc ggcaagcagt
     2941 gtaggaatat taacaagaga tttcaaactt ccggaaaaca tttttcaaga tgagctcgtc
     3001 aagacaatag atgaattaaa tcatgatgag aatgttcatg gaatactgat tcaacttcca
     3061 cttccaaacc aaattgaaac atctattact aatatggtaa accacgagaa ggatgtggat
     3121 ggattaacat cttacaactt aggtcttttg ttggagggaa ctccgaaact cataccatgt
     3181 actcctttag gtattctcga attattagat tattacaaca tcaatgttat ggggattgat
     3241 gtggctataa taaatagaag taatttagtt ggaaagccac tagggatctt gttaatgaat
     3301 cgcgatgcaa ctgtaacgtt tttccattca aaatcaaaag gaatggaaga taaattgaaa
     3361 aactttgatt gtatcattac tgcggttgga gatcgtcaaa aatttactct cacaagcaat
     3421 atggtcaagg atggtgctat aatatttgac gttggaattt caagaataaa tggaaaaatt
     3481 caaggagatg tagattttaa atcagtttca gaaagagcag ggtacattac tcctgtgcct
     3541 ggtggagtcg gtccaatgac agttacaatg ttattaaaaa atacggtgca tgcagccagt
     3601 ctcataaata agattagcaa tcattagaac gatgaaatta gacaatcaag gacagaaatc
     3661 aattttgaga aaagagattc ttcacaaaag aaactccttg agtcaatttc aaatagccag
     3721 cataagtaaa ttagttcaaa agaacctcat agaaagtcca gaatttattg aatcgaaatc
     3781 tattgggatt tatcttccca ttggctcaga agtacgaaca gctgatatta tcagaaatgc
     3841 actggaatca aaaaagacat tactgttacc tcgtgtgata actaatgatc tccgatttta
     3901 tattgtagaa aaaaaggaat ttgatcaaga ttcgtttgat ataaataaat ttggagttaa
     3961 agaaccaaag gaaacaaatg ggaatttaga tttttttgac ttgctaattg ttcccggaat
     4021 tgtatttgat tactgtggat acagaattgg atacggacac ggttattatg ataaatacat
     4081 gactaatgga aaattttcaa aagctattgg tatagcatat gaccttcagg taacaaaaag
     4141 tcccattcca atatctgaat acgataaaaa aatggatttt ttattcactg agagcggatt
     4201 tcatgtattt gatacctttt gatgctatgt cccttctaaa gtattcttca tcatctcccc
     4261 agtgaatttt agataccgct gaatatgatt tatttttagc tccctcaagg gtatcagcca
     4321 gtgaggtaac tgataagacc ctcccaccat ttgtaataat ttcccccatt gaatttttct
     4381 tggttcctgc atgaaatacg tatgtatcaa catcaaattt cgaatttaat ccatgaatga
     4441 ctttccccgt ttgatacttt ccaggataac ctcttgaagc catgactata caaactgaat
     4501 gtctatcctt ccatctaatg ggtggcattg aatcaagctt atcatccata gctgcttcaa
     4561 gacattccaa aaaactagaa tccattcttg acaatatagt ttggcattcg ggatcaccca
     4621 ttctcacatt aaattccagt acgtatggtt catttgaacc gcgttctatc atgattcctg
     4681 catatagaaa acctctgaac ttaattcctt tatcatttaa ccccttcagt gtaggattca
     4741 ttattttctc cataatcttg gtaatcattt tttctgtgat gagaggcgtg ggacaatagc
     4801 tacccattcc cccagtatta ggaccattat cttggtcgaa gatattcttg tgatcttgac
     4861 ttgttgccag tggaactata gactttccat cgcaaagaac aataaatgat gcctcatcgc
     4921 cataaattct ctcttctatg agaatctgat ttctggaatt tctgaattca ttgtcattga
     4981 agattttctg aatcgcttgg atagctgatt tttcgctatc acaaacaaac acacccttac
     5041 cggcggcgag tccatcgagc ttaacaacta cattttttga ggaggatttg acatgattta
     5101 tagcagcatc ggcacctgaa aagattgaaa aagaagcggt ttgaattccc atgtctcgca
     5161 tgaaaagttt tgcgaatact ttacttgatt ctaatctggt tgcgctttta ctaggaccaa
     5221 atattggtaa ttgattcttt tcaaataaat caacaatgcc cagtgaaagg ggtttttcag
     5281 gacccactat tgtaaaggaa ttgttctcct ttgcaaattg acaaagcttc gttaaatcgt
     5341 tggaatctat ttcgatgttg ttatctgtcc ctccattccc tggagcaaaa aatacctttt
     5401 tctttgtatc atgcaagagc ttccacccaa tggaatgttc tcttcctcca gaaccgataa
     5461 tcaaaatggt atcatattga ttcaattcag atcatgaatt tagaattcaa aattccaccc
     5521 aactcaagct agatcgcctg tttcatttct aatcatgagg taattatcat ttatcactga
     5581 tcttacaaaa tcataatatt ctgaatcaga aaagcgaaca gtatcaactt ttgaacttat
     5641 tttttcctta gcaaaaccta agtgataaca tagaccctga ccggaaagtg tcctaaaata
     5701 gtaatcatta catgagcaat aatccaaatc taaatcaatc caatattcat gatgttttcc
     5761 aacgattgtc cagatgattt ttttactagg ttcgaataaa tgacacttca gcgatgggaa
     5821 tattgataat atgcacctct tacctgaata tctgtcatct agaatcccgc tttataaata
     5881 tgatttctcc cgattcgatt gattctaaca agagtgggtc ttcgatgcag tggcctatgt
     5941 gattcatgtt aatcccttta gtatcttgca acatgataca aatggaacca ttagaaacca
     6001 tgaaccccag atctcccctc ttaaacgttg atttctgttt ttctgctcct acagttactc
     6061 cggtttctac ataccctatc ttatgctcca taaaatgcag tcttccggaa attggcattg
     6121 ttttaataat agtagaaaaa gtgatcggcg acagatgacg tacaagttcc aatagtattt
     6181 tccccttgcc gccggcctct aacagaacat gaatccttga gacggagttt ggattgctcc
     6241 aggtcatatc tagctgtaaa ttaatttcta tatcgctatt aatttgttga tttattagca
     6301 acatttaatt atatattcac tttttttgct tttattcttg gttttaagac gttctagcgc
     6361 tgaaaaaaat aaggaaaaaa aactcgtcaa agtgaaaaaa cagcccaaag taaaaaaaga
     6421 tacaggaaca aagggtaaga atcctcaaga aaaagaaaag aaaagtaaaa aaaccaaaat
     6481 tgagatactg gaaactgaag aagaatcaaa aagtggcagg ccgaaagacg aagtagtagt
     6541 ttatccagag atggactttg aagctaggga aataacccct caagatagtc aggtattgat
     6601 aggtccacca acattgactc gatttgaacg tgcgagaata attggttcaa gatcgttaca
     6661 actatcactt ggcgcaccaa ttttaattga ttcatcgaaa aagtttagtg atacaatatc
     6721 aatcgcagta gcagagttag atttgaaagt tcttcctatt tccataagaa gagtactgcc
     6781 taacggatta tatcaggaca ttccgattga ctggttaaaa taagtagaat aaattaggaa
     6841 aaataaccgt ccaaattttc gacgatctac aatcctttag tactaatcat gatcaaatat
     6901 gtataggtaa agtgtaggtt tttgcttgtc aatcaagtta ggaaaattta aatctcgata
     6961 ttttacaact ctatgagggt caaaattcct acaattcatg gtaatcacct aggccttaat
     7021 gcgatgataa ttttagaaga tggttcaacg tatcgaggta caggttttgg ctatccaaag
     7081 acagtgggtg gcgaatttgt ttttaatact ggcatggtag gttacacgga gactttaact
     7141 gatccatcgt atagagggca aatcttgtgt ttgacttatc cgcttattgg gaactatgga
     7201 gtgccgagca attccattac tgatatctat ggattgccaa aatattttga atctgataac
     7261 attcaagttt ctggattgat tgttcacgag ctgtctactg tagctaatca tagagaatgc
     7321 cacaagactt tagatcaatg gttatatgat gaaaaaatac caggaattag cgggattgac
     7381 acacgtgact taaccaagaa aattagaata aaaggagtaa tgaaaggtgc tctctcagtt
     7441 tcggaaaaac aaataaacac aaaagaacta ttgaatacta tcaagaggac caaatatgat
     7501 ggatttaact tcatgtcgca ggtatccgtt gacaaaacat ttgaatatgg agatccaaaa
     7561 ttagaaccga tagtgttgat tgatacgggc acaaaatatt ccattattcg taatatttta
     7621 cggatgggat atagggttat tcgagttcca tgggatatgt cgtttaataa gattatttct
     7681 tataaaccca agggtattat aataagtaac ggtccaggag atcctaaaat gtgcaatagt
     7741 acaatagaca ctgtcattaa attgtttgat tcaacattac caatattagg aatatgttta
     7801 ggaaaccaaa ttatcgcact tgctgcaggg ggtgatacat acaagttaaa atttggacac
     7861 agaggtcaaa ataaaggatg cactgaccta aacaccaatc aaaccttcat tactagtcag
     7921 aatcatggat atggggtaaa atcaaacacg cttaataaaa ctggattcaa agcttggtat
     7981 attaattctg atgacaatac tattgaaggc atcaaacatg aatcgaaacc tataatcgca
     8041 gtacagtttc atccagaagc atctcctgga ccttatgatt gtttgcacat attcgaaagt
     8101 tttaaagatc ttgttgaaca aaatggatct aacgaaaagt ctaatcaaat tgatagagta
     8161 aatggaggtg ggaaaattta ccaaagaatg aaaccataaa gaaagcaata gtattgggaa
     8221 gcggagcaat aaaaatcgga gaagccggcg aaagtcagaa atcctgaccg ccaatttgac
     8281 tattccggtt cacaatgcct caaagctttg tccgaagaag gagttaagac cgtactggta
     8341 aatcccaata tagcaaccat ccaaacagat actagatttg cgaataaggt atatttgtta
     8401 ccagtaaacg gatattacat aaaccaaata atagagaagg aacttcctga ttcaataatg
     8461 ttaggttttg gtggccagac cgcattaaat tgtggagtat cattacatga tgaaggaatt
     8521 ctagataaat ataaaataca agtattgggc actcctataa atagcataaa gattactgaa
     8581 gatagacaac aatttaaaaa tgcaatgata aagagtaacg ttcctgtact agagagtgct
     8641 ccagcatata atttaagaga ggcactggat gttgcagata aaatagggta tccggtgata
     8701 atcagggtag catacactct tggcggcaaa ggaggaggag ttgcgcataa tgaatatgaa
     8761 ctccaagaga ttgttcagcg agggctttca ttgagtctag taaatcaggt attaattgaa
     8821 aaatacatcg gaagttggaa acaaatagaa tatgaaatga tgagggatta cactggcaat
     8881 agcattgcga tttgcaatat ggaaaatgtt ctaggaatga gagtacatac aggggacaat
     8941 attgttatcg caccgtcaca gacaatcaat aatgaagaat atcatagatt gcgctccgct
     9001 gcaattagag cagtagaata ttgtggcatt gtcggggaat gcaatataca atttggttta
     9061 gatccgcaaa gtgaatcata ttgcgcaatt gaaataaatg ctagactttc gagatcatcg
     9121 gccctagcca gcaaggcaac tggatatccg ctagcatata tggcagcaaa aatgggactt
     9181 ggttactctc tcacagaact agtaaatagt ataactaagg ctacaacagc ttgctttgaa
     9241 ccttcattag attatgtagt cttgaaaatg cctagatggg acttcaggaa gtttgaattg
     9301 gttaacagaa ggattggcac tagtatgaag tcagtagggg aggttatggc aattggcaga
     9361 acatttgaag aagtcttgca aaaagcaatt agaatgaccg atacgggaaa aatgggcctt
     9421 gttggaaatg aacaagatat gaaggaagaa ttggaattaa ttgaacaaaa attgttgtat
     9481 ccaagtgatg agattttatt tgatgtcgtt aaggctatgc gattggggat tcccatatcc
     9541 agaataagta aactttcaac gatagattca tggttcctga taaaaatcaa aaatattgtg
     9601 gacatgtatg ataaattgca tggggccgat gtgtctgata tttctgaaga tttattgaga
     9661 gatgcaaaaa agtacggatt ttcagattta caaataggaa aatgtttggg tgtaaaagaa
     9721 ataagtgcga gaaaattgag acaaaagctt ggtattaatc cagttgtaaa acaagtagat
     9781 acgttagctg cagaatggcc tgcaaagaca aattatctgt atttaactta tggaggagat
     9841 aaagatgata ttgtttttag gaaagagaaa aattctgtaa tggtactt
//
LOCUS       DASUMD010000145         2035 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_927949, whole genome shotgun sequence.
ACCESSION   DASUMD010000145 DASUMD010000000
VERSION     DASUMD010000145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2035)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2035)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2035
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_927949"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..521)
                     /locus_tag="VFX26_04100"
     CDS             complement(<1..521)
                     /locus_tag="VFX26_04100"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX5573689.1"
                     /translation="MFRKENNNHSIWTTLAILSSIATISMYTETMLLPALPQLIDEFD
                     LSYNNSSWILSAYLVAGAVMTPVSGKLSDIYGKKKIMVILILIYTIGLIISPFSSNFF
                     MLLMSRILQGIGISVFPVTFGLVREHFPREKLAISQGIISSMFAGGSVLGLAIGGTIV
                     QFYGWRLTFFSIIP"
     gene            740..1927
                     /locus_tag="VFX26_04105"
     CDS             740..1927
                     /locus_tag="VFX26_04105"
                     /inference="COORDINATES: protein motif:HMM:NF016765.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573690.1"
                     /translation="MSSIDEIKTKLKKNWYQFVNANSKKFSNKVIDGSSPPSIFVGEF
                     GYPHVRIGPMIPPYHGDTSILDRPELWSGKSLEQIINYRINLLKGTMIHNVNKISGRY
                     IESLQEMALSKRVVESIMTFEKIPSQYLNEMTLTKDGSEEIPTIFSAPVSEIKILPST
                     ADQKIEKKYYDDDSYAADAVVELYENSIDMTRISKVLSMGMLGRKKNRKLVPTKWSIT
                     AADDIVSLYLLNRIKDNAILDNYLVFDFNHLANYYSVIFIPDDVWYFEMIESWIDTNG
                     RVHIGSDYESGKKIDHYPSIAGAYFAARLAAAEYLFKKRKKASVLILREIHPEYFVSL
                     GVWQIREGLRECLRSKARNFESFDSAFKYGVSKTSLSKNEWIKNSSIIKNKKQKRISD
                     YLD"
BASE COUNT          726 a          337 c          360 g          612 t
ORIGIN      
        1 ggaataatgg aaaaaaatgt caatcgccaa ccataaaatt gcacaatagt cccgcctatt
       61 gcaagtccaa gtactgaacc tcctgcaaac atagagctta tgattccttg acttatggct
      121 agtttttctc tcggaaaatg ttctctgaca agtccgaaag taacagggaa gactgaaatt
      181 ccaattccct gcaaaattct tgacattagt aacatgaaga aattagaaga gaaaggtgaa
      241 atgataagac caatagtata aattagaatg agaattacca tgatcttttt ctttccataa
      301 atatccgata attttccact gactggcgtc ataactgctc ctgcaacaag gtatgcactt
      361 agtatccatg atgaattatt atatgataaa tcaaattcat caatcaattg aggaagtgca
      421 ggaagaagca tcgtttctgt atacatagat atggtagcaa tagaacttag aattgcaagg
      481 gtcgtccata tcgaatgatt gttattttct tttctaaaca agggttatct tttttgatta
      541 taataaaact caaagatcaa tataattgat tttgcacggt gctatgccca tttaaaatat
      601 gctaatagtt catccatatc catgatcttg aggcaagttg tttcgacaac ataaacaact
      661 ggtaaaaact actaattaca atctttttgg tcaatatttt attagtcggc ggattcaaag
      721 agaatgcatc cacagcttaa tgtcatccat tgatgaaata aagacaaaat taaagaaaaa
      781 ctggtatcag tttgtcaatg ctaatagtaa aaaattttct aacaaagtaa tcgatggatc
      841 ttctcctcca tcaatatttg taggtgaatt tggataccca catgtcagaa ttggtccaat
      901 gatacctcct tatcacggag atacttcaat actagatagg cctgaattat ggtcgggaaa
      961 gtccttagag cagattatca actacaggat taatcttttg aaaggaacaa tgatccataa
     1021 tgtgaataaa atttctggta ggtacatcga atcattacaa gaaatggcat tgtcaaaaag
     1081 agttgtcgag agcatcatga cttttgaaaa aattccatca caatatctaa atgaaatgac
     1141 cttgactaaa gatggatctg aagaaatacc cacaatattt tcagcacctg tgagtgaaat
     1201 taagattctt ccctcaacag cagaccaaaa gatcgaaaaa aaatattacg atgatgattc
     1261 atatgcggca gatgcagttg tggaactcta tgagaatagc atcgacatga ctcgcatctc
     1321 aaaagtttta agtatgggca tgctgggcag aaagaaaaat cgtaaacttg tacccactaa
     1381 gtggagcatt acagcggcag atgatatagt ttcactgtat ctcttaaaca gaatcaagga
     1441 caatgcaatt ttggataatt accttgtctt tgactttaat cacttggcaa attattactc
     1501 tgtaatattt attcctgatg acgtttggta ttttgaaatg attgaatcct ggatcgatac
     1561 caacggcaga gtacatatag gatcagatta tgaatcagga aaaaaaattg atcattatcc
     1621 ttctatcgct ggagcatatt ttgcagcaag attggctgca gccgaatatc ttttcaagaa
     1681 aagaaaaaaa gcatcggtgt taattttgag agaaatacat cctgaatatt tcgtgtcact
     1741 tggtgtctgg cagatcagag agggtttaag agaatgtctc agatcgaaag caaggaactt
     1801 tgaaagtttt gattcagcat tcaaatatgg agtttccaag acttcattgt caaaaaacga
     1861 gtggataaaa aatagttcaa ttatcaagaa caagaaacag aaaagaattt ctgactatct
     1921 cgattaagga atcttgaaaa taactctttt ttatccgttg tcagttaaaa attacagact
     1981 tattgtccta ggtaattaac atacgcattt attttcacga agtatccgca attat
//
LOCUS       DASUMD010000146         7782 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1148549, whole genome shotgun sequence.
ACCESSION   DASUMD010000146 DASUMD010000000
VERSION     DASUMD010000146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7782)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7782)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7782
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1148549"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..829
                     /locus_tag="VFX26_04110"
     CDS             <1..829
                     /locus_tag="VFX26_04110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573691.1"
                     /translation="PDGVAFLYPTKQKGFVWYMNHDEPFDSHFERGGGSTYDKLVKND
                     DDSWTADDNRRVKFNLNVDPDYEDAIGGCNMSFKDSMARGYTYDKSDLDNVELTGFFN
                     VHKPTENDGIYLRGPCNHHDEADHLCCEEFNYDCETDCNSTMIRSKVKFTKQSPNKYH
                     NDPAGVKAIVPRIILAGHGWFGIKYIHIILSRDMNNPKVKLEQWMNFSGDGKTWIKVN
                     EVIDTRSYKWGPKAICEGEDYEVGAWGAPRMVYKWSRGDVDFKWFSCRQIEPTLIRT"
     gene            1139..1711
                     /locus_tag="VFX26_04115"
     CDS             1139..1711
                     /locus_tag="VFX26_04115"
                     /inference="COORDINATES: protein motif:HMM:NF015674.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF308 domain-containing protein"
                     /protein_id="HEX5573692.1"
                     /translation="MTTSMDKSPGWLRGVEIGLGIITVILSIYALAFPAVTFVAVVFI
                     LAIILFVVGIERIISGIFLRRGGRWTMIGLGILALIFSVLVMAYPGFASWIISIFIGV
                     ALLFLGGASIAQGFSGGQSGWRRAFLIGVGALLIIIGIIVLVSPLFGMVFAGFVIAIG
                     LLIAGIQMITAGATGTQVMPDSFKRAKDEL"
     gene            complement(2111..3118)
                     /locus_tag="VFX26_04120"
     CDS             complement(2111..3118)
                     /locus_tag="VFX26_04120"
                     /inference="COORDINATES: protein motif:HMM:NF024883.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEX5573693.1"
                     /translation="MVDEIDRFLLSQLGKNSRTSSYEMSRYLQEMGYKITDRTVRHRL
                     KRLEKSNIILAYSLLLNPALLSEKINRTILLKFKFRADTSVMISRLEKYCGESYFCIY
                     SARMTGDFDWICHFVFDSVEQFEFESSNFLNRFIDLIDDFRSYESSMVKVTPYTFFDD
                     HEIRDQKWRAYKILNSLKKYHNLNEKLQFIVESLVKYFGAKFARIWLLDRECKNLVLK
                     FSAGKYKNIDGEFSKVRADSNKIGNIVITRKPSITNDVVNDKRIRYPEWAKKEKLQSF
                     AGYPLTHGNKVIGVLAMFSTKRMQAADFEVLGVFSDQISKELEGLFEAVDFLIPDGLK
                     Q"
     gene            3286..3597
                     /locus_tag="VFX26_04125"
     CDS             3286..3597
                     /locus_tag="VFX26_04125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573694.1"
                     /translation="MKIDFFEIERVVEELAKNYAAPCTTTWFKVTNNKKPSTEEYREK
                     VVEFMKQFEAILSVQLPTGEQSTSCLDYVKKLLHTQILLIRRGNNKEVERRFQYYVNY
                     N"
     gene            3665..4261
                     /locus_tag="VFX26_04130"
     CDS             3665..4261
                     /locus_tag="VFX26_04130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573695.1"
                     /translation="MINYGLLAIPLISMLVIGGVISFFVVYSFYPEKHENVSIDGKCY
                     ELVGMAHQKITNLTAEMKIRKMLLQLSKVEPQNAIIPIIFNGKDSETKNFINRHDLAV
                     TSNQKVIYFPNINGSVVTANITKTDLQRIIGNLSIFDVLPSSKSVVGSIGIQPNQYIT
                     NDEDDDVSLLLDKIQKSRVMEIIRDSDGVKSSECRNET"
     gene            complement(4441..4770)
                     /locus_tag="VFX26_04135"
     CDS             complement(4441..4770)
                     /locus_tag="VFX26_04135"
                     /inference="COORDINATES: protein motif:HMM:NF012753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HEX5573696.1"
                     /translation="MIRIEVVMAENDIAKVSEGLKKTGIGGLTVFKVKGRGKTIPAEI
                     HTSKGTQIFTPEFADKYVVVGVLPDAKMDEAIKIIRENSKIGKIFITPVSHAIDLATG
                     VEDEQAI"
     gene            4853..6121
                     /locus_tag="VFX26_04140"
     CDS             4853..6121
                     /locus_tag="VFX26_04140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008519 - ammonium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0072488 - ammonium transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HEX5573697.1"
                     /translation="MFDYELAIDTGDTAWMLIASSLVLLMIPSLGLFEAGLLRKKNTV
                     SIFMQIFFGMALLSVMWFTFGFSLSFGPDTAGLVGNLQWTFLRGIPWDAPLTQYAPTI
                     PGVLFVKFEMMFAVITPLLLTGAIAERMKFSAFVLFIAAWSLLIYYPLVHWIWAVGGW
                     LNELGVKDFAGGIVIHTSAGMGALAAALVLGRRKDFGPSIMVPHSIPLAVLGSSLLWL
                     GWFGFNAGSALASGGVAGNTVINTHMASAVSALIWVGLSWKRTGKPSVIAAINGAIAG
                     LAGITPASGYVSVESAFIIGIAVGIGSYLGVLLLKERLKIDDALDVSSVHGIPGIIGS
                     LAVGIFASLAINPNGVNGLLYGNPQQLLIQAIGVGVAAALGFGGTYIIMKVINKLIGV
                     RVSPKVEESGLDIEEHAERAYSDEDDLSKI"
     gene            6295..6690
                     /locus_tag="VFX26_04145"
     CDS             6295..6690
                     /locus_tag="VFX26_04145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573698.1"
                     /translation="MVKLEFLKGTQSESQAIESDLSFEEICPNWSKKLRNGIDEIDRM
                     ILVKDSKYCVIGEAWGFTGKQTGYYIAPLIPIIGCWTCIRYGQKFSKIAKDKKSYDNF
                     GPLISDFLKHWNQRHKKITITRLSSIVAR"
     gene            complement(6938..7315)
                     /locus_tag="VFX26_04150"
     CDS             complement(6938..7315)
                     /locus_tag="VFX26_04150"
                     /inference="COORDINATES: protein motif:HMM:NF018893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1428 domain-containing protein"
                     /protein_id="HEX5573699.1"
                     /translation="MKRNVTARYVDGFVLAVPKSKINAYLRLARMCSKIWLEHGALEF
                     RECVGDDLQINMGVPFPKMIKTKPKETVVFSWITYKSRSHRDSVNSKVMKDSRMKNMD
                     PKSMPFDTKRMVYGGFKILVNAS"
     gene            7499..>7782
                     /locus_tag="VFX26_04155"
     CDS             7499..>7782
                     /locus_tag="VFX26_04155"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX5573700.1"
                     /translation="MEQSGHVAIVTGGNRGIGYEICKELSGAGCHVVLTSRNEEDGRQ
                     AVAKLYAHDNIAYHRLDVTDSEDIASLRNWILKTYGRVDILINNAGVYLDG"
BASE COUNT         2429 a         1306 c         1519 g         2528 t
ORIGIN      
        1 acctgatggt gtggcctttt tgtatcctac taaacaaaag ggctttgttt ggtatatgaa
       61 tcacgatgaa ccatttgatt cgcattttga aagaggtggt ggttctacat atgataaatt
      121 agtaaagaat gatgatgatt cttggacagc tgacgacaat aggagagtca agtttaacct
      181 gaacgtagat cctgactatg aggatgcgat aggtggttgc aatatgagtt ttaaggactc
      241 tatggcccga ggctatacat acgataaaag cgatcttgat aatgttgaat taactggttt
      301 ctttaatgtc cacaagccta cagaaaatga tggcatctac cttaggggtc cttgtaatca
      361 ccatgatgaa gccgatcatc tttgttgtga ggaattcaac tacgactgtg aaactgattg
      421 caattctacg atgataagat caaaagttaa attcaccaaa caaagcccaa acaagtatca
      481 taatgaccct gcgggtgtta aagcaatagt tccacgtatc attttggctg gtcatggttg
      541 gtttgggata aagtatattc acataattct atctcgggat atgaacaatc caaaagtaaa
      601 attggagcaa tggatgaatt ttagtggcga tggcaaaacc tggataaagg taaatgaggt
      661 tattgacaca agatcctata aatggggacc aaaggcaatt tgtgaaggcg aagactacga
      721 agttggagcc tggggagcac cacgtatggt ttacaagtgg tcccgcggag atgttgattt
      781 caaatggttt tcatgcagac aaattgaacc tactttaatc cgcacgtaat tcaaaaacat
      841 ccaacatata actagagcct ggttatttgc aacaaagcca gtagataaat tccaaataat
      901 cttgtccagt tcataaacat aaaatatatt tttacaatag attactatag gtgaaacgga
      961 ctgttacaaa agaaatttat tcactcttaa ttctagttcc caattcagtc gtgctgatga
     1021 gatttcagtg ttaaattagt tataaaatat atgttttatg ggctataaat ttgtaaaatt
     1081 gagtattttt ttattttatt tacaagactt taaatacctt gtatggcgtg tctaatcaat
     1141 gacaacgtct atggacaagt ctcctggatg gcttcgagga gtagaaatcg gtcttgggat
     1201 tattactgtt atactctcta tttacgcact cgcatttcca gcggtcacat ttgtagctgt
     1261 agtctttata cttgcgataa ttttgtttgt tgtaggtatc gagagaatta tttctggaat
     1321 tttccttcga cggggcggaa gatggacgat gataggacta ggaatacttg cgctcatatt
     1381 ttctgtgctt gtgatggcat atccgggatt tgctagttgg attatatcga tcttcatcgg
     1441 cgtagcgctt ctctttcttg gtggtgcaag tatagcacag ggattctcag ggggccaatc
     1501 tggctggcgg agagcattct taattggagt aggggcattg ttaataatta taggaatcat
     1561 agtccttgtg tctcctttgt ttggtatggt ctttgcagga tttgtcatag caataggact
     1621 attgatagca ggaatacaaa tgataacagc tggcgctaca ggcacacaag tgatgcctga
     1681 ctcgtttaaa cgagctaagg acgaactgta acttaacgct gccaagaagc gatgggataa
     1741 actagtattt cccaattttt ttattttatt ttagtcttag cgcttgcgtt actataaggc
     1801 atcaattaaa ctagaaattt caagtactaa atcgcaatgg tttcagagat aggtattgca
     1861 gtattgaaat caccgcaatt ttgtgaccaa gtcaatacat cttgcctgtt tttcttcaat
     1921 gtctgaaagt ctttgaaata attcattttt gagtaaaaga aacgagatgt ataagtaagt
     1981 tacgattata acaattccaa tttgatactt tagaaagtta cgttcttaat tgtgagataa
     2041 tgaacttttg actttatatg cattaggaaa atcagattta catcctaaat tcattaaaaa
     2101 tactatttgc ttattgtttt aacccgtcag gtatcaagaa atcaaccgcc tcaaataatc
     2161 cttcaagttc cttggatatc tgatctgaaa atactcctag tacttcaaag tcagctgcct
     2221 gcattctttt agtgctaaac attgctaaaa ctccaatcac tttattaccg tgagtaagag
     2281 gataaccagc aaatgattga agtttttcct ttttagccca ctcaggatat ctgattctct
     2341 tgtcatttac aacatcattt gtaattgatg gtttacgagt tattactata ttccctatct
     2401 tatttgagtc agctcgaacc tttgaaaact ctccatctat atttttgtac tttccagcgc
     2461 taaattttag aacaagattt ttacattctc tgtcaagtaa ccatattcgc gcgaacttcg
     2521 ctccaaagta ttttactaaa ctttcaacga taaactgtag cttttcgttt aaattgtggt
     2581 actttttcaa ggagttcagg atcttgtaag cgcgccattt ttggtctctt atttcatgat
     2641 catcaaaaaa agtataaggg gtaaccttaa ccatgctgga ttcataagat cggaaatcat
     2701 cgataagatc tataaacctg ttcaagaagt tggaactctc aaactcaaat tgttccactg
     2761 aatcaaaaac aaaatgacat atccaatcaa agtcccctgt catccttgca gaataaatac
     2821 aaaaatatga ttctccacag tatttctcaa gacgagagat cataacagac gtatcagcgc
     2881 gaaatttgaa ttttagaaga attgtacgat ttatcttttc tgatagtaaa gctggattta
     2941 ggagaagaga atatgctaat atgatgttag acttctccaa tctctttagt ctatgtctca
     3001 cagttctatc ggtgattttg tagcccattt cttgtaagta tcttgacatt tcgtatgaag
     3061 atgtacgtga atttttccca agttgtgaca acaaaaatcg gtcgatttca tctaccatag
     3121 gttaatgacg tttaacatca tttttatgta ttgccaatta ggaaatttta taaaagataa
     3181 atcctctttc cctatggtat atttgttgtc ttattgccta atcggaaata ttgaaaataa
     3241 tttttttccg tagtagatat aacattattt tacctaaaca aggatatgaa aatagacttt
     3301 tttgaaatag agcgcgtagt ggaggaactg gcaaaaaact atgcagcccc atgtaccaca
     3361 acgtggttta aagtcacaaa caacaagaaa ccgtcgacag aggaatacag agaaaaggta
     3421 gtagaattca tgaaacaatt cgaagcaatc ttatccgttc aattaccaac cggcgaacaa
     3481 agtacttcct gtctggacta cgtaaagaaa cttttacata cacaaatctt actcattaga
     3541 agaggaaata acaaagaagt agagaggcgt tttcaatact acgttaatta caactagttt
     3601 tgacaattac attactttga atatcttgcc aatatactat tgaataagat gggaataata
     3661 taatatgata aattacggct tacttgcgat accgctcata tcaatgctcg ttattggtgg
     3721 agtaatcagt tttttcgttg tatattcatt ttatccagaa aagcatgaaa atgtaagcat
     3781 tgatggcaaa tgctatgagt tagtaggtat ggctcatcaa aaaattacga atttaactgc
     3841 agaaatgaaa ataagaaaaa tgttactcca gctaagtaaa gtagaacccc aaaatgcaat
     3901 cataccaata atcttcaatg gaaaagattc tgaaactaaa aatttcataa atagacatga
     3961 tcttgctgta acctcgaatc aaaaagtgat atattttccg aatatcaatg gaagcgtagt
     4021 tacagcaaat attactaaaa ccgatctaca aagaattatt ggaaatctga gcatatttga
     4081 tgtccttccg tcatcaaaat ctgtcgttgg tagtataggt atccagccga atcagtatat
     4141 aacaaatgat gaagacgacg atgtttcttt actattggac aagatccaga aaagtcgagt
     4201 catggaaata attcgtgact cagacggtgt taagtcatca gagtgtcgca atgaaacgta
     4261 attaatcagt tctattttaa aataaacaaa attaaaagat caaaattatt ctagaagtac
     4321 tgtaaagacg cgaaagtgtc tcttgcttgc ttgatttttt atagatttgc tggattatta
     4381 ctatctatgg attacggaaa cttgaagttg gtgctgtaga atatatcttt atcaatcccg
     4441 ttagattgct tgttcatctt caactcctgt tgcaagatct attgcatgag atacgggagt
     4501 aataaagatc ttgcctattt tggaattttc tcttattatt ttgatagctt cgtccatttt
     4561 tgcgtctggc aagacgccta caactacata tttatcagca aattctggtg tgaaaatttg
     4621 agttcctttt gaggtatgaa tctctgcggg tatggtttta cctcgtcctt ttaccttaaa
     4681 gacagttaag ccaccaattc cagtcttctt caaaccttcg cttacctttg caatgtcgtt
     4741 ttcagccata accacttcta ttcttatcaa tcaaatttct taaggaaggg ctattaaaat
     4801 aattatctcc gggttaccaa gaagcaactt ttttatacgt atttgattgt gattgtttga
     4861 ttacgagttg gccatagata ctggagatac agcgtggatg ctaattgcat cgagtcttgt
     4921 attgttaatg attccttcat taggattatt cgaagccggc ttacttagga agaaaaatac
     4981 ggtttcaatt tttatgcaga tattttttgg aatggctctt ctaagcgtga tgtggttcac
     5041 ttttggtttt agtctatctt ttggccctga tacagcagga cttgttggaa acttgcagtg
     5101 gacatttctc agaggtattc cgtgggatgc tccgttaaca caatatgcac ctaccattcc
     5161 gggtgtcttg ttcgtaaaat ttgaaatgat gtttgctgta ataactccct tactcttaac
     5221 tggtgctata gcagagagaa tgaaatttag tgcttttgtc ttgtttatag ctgcctggag
     5281 tttacttatt tactatcctt tagtacactg gatttgggcc gttggcggat ggcttaacga
     5341 gttgggtgta aaggactttg caggaggaat agttatccac accagtgctg gaatgggcgc
     5401 ccttgctgct gctctagttt tgggcagaag aaaggatttt ggtccctcga ttatggtgcc
     5461 tcatagtata ccactcgcgg ttctcggatc atctctactt tggctgggat ggtttggatt
     5521 caatgctggc agtgctctag catcgggggg cgtcgccggc aacactgtaa ttaacactca
     5581 catggcatct gcagtttctg cgctaatatg ggtaggactg tcatggaaaa ggactggaaa
     5641 accaagtgta atagcagcaa ttaatggagc aatcgccggt cttgcgggaa taactcctgc
     5701 ctctgggtat gtgagcgttg agtccgcttt cattattggt atagcggtag gaataggatc
     5761 ttatctggga gtactattgc ttaaagagag actcaagatt gatgatgcac ttgatgttag
     5821 ttctgttcat ggtatacctg gcataatcgg ttctctagct gtaggaattt ttgcctctct
     5881 tgcaataaat cctaacggtg ttaatggtct tttgtatggt aatccgcaac agctgttgat
     5941 acaagcaata ggagttggtg ttgccgcagc ccttggattc ggtggcacat atataataat
     6001 gaaggtgata aataagctga ttggagtcag ggtctctcca aaggtagaag agtctggatt
     6061 ggatattgaa gaacatgccg aaagagcata cagtgatgaa gatgatttga gtaagatcta
     6121 gtagaatgat ttgcaaagtg actcccatat ccaaaaattg atcttcactt ttctaatcca
     6181 agatatatga caacttttta acctgtccta cctaactcta tacccatatc tccaagatga
     6241 tggaaacaat aattttatgg ttaaagttat agattagttc gtgcatatat tatcatggta
     6301 aagttagagt ttctcaaagg aactcaatct gaatcgcagg ctatagaatc tgatttgtca
     6361 tttgaagaaa tttgtcctaa ttggtccaaa aaattgagaa atggaataga tgaaatagat
     6421 cgaatgattt tagtaaagga ttctaagtat tgtgtgatag gtgaagcttg gggatttaca
     6481 ggaaagcaaa caggctatta cattgcccct ttgattccta ttattggttg ctggacttgt
     6541 atcagatatg gacagaaatt tagcaaaatt gctaaggata agaaatcata tgataatttc
     6601 ggacccttga tctcagattt tttaaaacac tggaatcaaa gacataaaaa aattacaatt
     6661 actaggctta gttcaatagt ggctaggtaa tgtaactaag attctaaatt attacttttt
     6721 ttcgaatcgt tcgcaaatga tttgcatgga ttggaacaat tatttactat tcataattca
     6781 cctattagac ttatatttcc tttttgataa tcattctagt aaattagtaa tgaatataat
     6841 tacacatcgt ctttgaatat tgcaaaaaca tgccagatag ttgaaatttt gttgatattt
     6901 gccgactagg aactgataat gcaagtgaat gcaaaagtta tgaggcattt actaggatct
     6961 tgaatccacc atataccatg cgcttagtat cgaagggcat ggattttgga tccatatttt
     7021 tcatccgcga atccttcatc actttggaat taacgctatc tctatgagat cgagatttgt
     7081 acgtaatcca tgaaaaaacg actgtttctt taggtttagt ctttatcatt tttggaaatg
     7141 gcactcccat gtttatctga agatcgtcac ctacgcactc ccgaaattcc agagcaccgt
     7201 gctcaagcca tatcttgctg cacattctgg ctaatcttag atatgcatta atcttactct
     7261 taggaacagc taatacaaac ccgtcaacat atcttgccgt aacgtttctt ttcattaaaa
     7321 tagtagggac aattgtcgta ttttaaatgt aggttccaaa tggaaaataa atccgaatca
     7381 agtataaact aagagtctga atattactta aaaatacact agaatcatgg gcgtacgaat
     7441 caatattgca tgacaaaatt gataataacc atgtaagcat tatgcaaata acccaaaatt
     7501 ggaacaatct ggtcatgtag caattgtaac tggaggaaat cgtgggattg gatatgagat
     7561 atgtaaggaa ctatctgggg ctggttgcca tgtcgttctc acaagtagga atgaagaaga
     7621 tgggcgacag gcagtagcta aattatatgc tcatgataat atcgcatatc acagactcga
     7681 cgtgacagat agtgaagaca ttgcaagtct tcggaattgg attttaaaga cttatggaag
     7741 agttgatatt ttgatcaata atgcgggagt ttatttggat gg
//
LOCUS       DASUMD010000147         2601 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1039189, whole genome shotgun sequence.
ACCESSION   DASUMD010000147 DASUMD010000000
VERSION     DASUMD010000147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2601)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2601)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2601
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1039189"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            100..966
                     /locus_tag="VFX26_04160"
     CDS             100..966
                     /locus_tag="VFX26_04160"
                     /inference="COORDINATES: protein motif:HMM:NF013341.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIO1 family regulatory kinase/ATPase"
                     /protein_id="HEX5573701.1"
                     /translation="MSSFSKAGHLVSLLNKSDFKILKVFASSLKNRQFLNLPTLSQYS
                     NLSQSLIEHHLKRLVKFGLISKSNIGYTLLVTGLDIYVLKILSNRNIITAIGPQIGIG
                     KEAEVYLAHDSLKQDKILKMFRLGRSSFKQIKRKRDVNTGTNSWLLLNIETAKKEYDI
                     LTYLKDSSTSFPSPLYRSFHCIVMEPIYGSRLSDIENLDYPELVLENIISNMSIAYRK
                     GYINGDLNEYNILVDDDNIFILDWPQAVRVDTTNSDVVLTRDVNNIIKFFSRKFEIER
                     DTHNIINIIKGK"
     gene            complement(1000..2145)
                     /gene="metK"
                     /locus_tag="VFX26_04165"
     CDS             complement(1000..2145)
                     /gene="metK"
                     /locus_tag="VFX26_04165"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HEX5573702.1"
                     /translation="MARRYLFTSESVTEGHPDKICDQVSDSILDEIISQDPDSRVAVE
                     AMTTTGIVIVAGEVTSNAKIDSQNVVRKTLKNIGYNGLKHGFDGNSCSVLTSIHEQSP
                     DISMGVAKNENGVQGAGDQGLMFGYATSETAELMPMPITLAHKLTMKLAKVRKEKTLD
                     WMGPDGKSQVSVIYEDSVPKKIDTVVVSTQHTEDISISQVREEVISKVIKPICDDLIH
                     DSTKFLVNPTGRFVIGGPVGDTGLTGRKIIADTYGGMGRHGGGAFSGKDPSKVDRSAC
                     YMARYIAKNIVASGIASKCEVQLAYAIGVAEPVSIMVDTFDTGKIDEEKIEAQVREIF
                     DTTPLGIIETLRLKRPIYTKTAAYGHFGRNEPDFTWEKVDKSGSFKM"
     gene            complement(2182..2430)
                     /locus_tag="VFX26_04170"
     CDS             complement(2182..2430)
                     /locus_tag="VFX26_04170"
                     /inference="COORDINATES: protein motif:HMM:NF013582.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0000398 - mRNA splicing, via spliceosome
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="U6 snRNA-associated Sm-like protein LSm6"
                     /protein_id="HEX5573703.1"
                     /translation="MSSSPQQPKRPLTILQRSLNMKVSVRLKNELEYRGRMNNVDSYM
                     NLILLDAEEFNGANPVANYGKVVIRGNNVLFIKIEKDL"
BASE COUNT          818 a          488 c          417 g          878 t
ORIGIN      
        1 agagacaacg atcctagatt cgttctttgg atattttaat tgttatctaa agctaacaca
       61 ataacctttt aatttaatat aatcagtaaa tgctttcagt tgtcttcttt ttcaaaggcg
      121 ggacaccttg tttcattatt gaataaaagt gattttaaaa tcttaaaggt gtttgcttcg
      181 tcattaaaaa atcgacaatt tttaaatctt cctactctga gtcaatattc aaacctaagt
      241 caaagtttaa ttgagcatca tttaaaacgg cttgtcaaat ttggattaat aagtaaaagt
      301 aatatagggt atacattgtt ggtaacggga ctagatatct atgtcctaaa aattctttcc
      361 aacaggaaca taatcactgc aattggacct caaataggta tcggtaaaga ggctgaagtt
      421 tatctagctc atgattcgtt aaaacaagac aagattttaa agatgttcag acttggaaga
      481 tctagtttca aacaaataaa gagaaaacgg gatgtaaaca caggtaccaa tagttggtta
      541 ctattgaata tcgaaacagc aaaaaaagaa tacgacatat tgacatatct taaagattca
      601 agtacctctt ttccaagtcc tttatataga tcttttcact gcattgttat ggaacccatt
      661 tatgggagta gattatctga tattgaaaat cttgattatc ccgaattagt tctggagaac
      721 ataattagca acatgtcaat tgcttatcgt aaggggtaca ttaatggtga tcttaatgag
      781 tacaacattc ttgtagatga tgacaatatc tttattctgg attggcctca agccgttaga
      841 gtggatacta ctaattccga tgtagtgctg acgagagatg taaataatat tattaaattc
      901 ttttcaagga aatttgaaat tgaaagagat acacataata taattaacat cataaaagga
      961 aaatgaatac taaaattgcg agtatattgt aaagaatgtt tacatcttaa atgatcctga
     1021 tttgtcgacc ttctcccacg taaagtcagg ctcgtttcta ccaaaatgtc catatgccgc
     1081 agttttcgta tatattggtc ttttcagacg taacgtttca attattccga gtggcgtggt
     1141 atcaaaaatc tctctaactt gtgcttcaat tttttcttcg tcaattttcc ctgtatcaaa
     1201 cgtatcgacc ataattgaaa caggttcagc tactcctata gcatatgcca attgaacttc
     1261 gcattttgaa gctatgcctg atgcaacaat attttttgca atatatctcg ccatgtagca
     1321 tgcagaccta tcaaccttag agggatcctt tcccgaaaaa gcacctccac catgtctgcc
     1381 cattccacca tatgtatcag ctattatctt tctacctgtt aatccagtat cacctacagg
     1441 accacctata acaaatctgc cagtcggatt taccagaaat ttggtagagt catggataag
     1501 atcatcacaa attggcttta taaccttcga aataacttct tctctcactt gagatattga
     1561 gatatcttca gtatgctgag tagaaacaac gaccgtgtca attttctttg gaacggaatc
     1621 ttcatagata acagaaacct gagattttcc atccgggccc atccaatcta aagttttttc
     1681 ttttctaacc tttgccaatt tcatagttaa cttgtgtgcc aaagttatgg gcattggcat
     1741 aagctcagcg gtttcgcttg ttgcatatcc aaacattaaa ccttggtctc ctgctccctg
     1801 tacaccgttc tcatttttag caacacccat ggaaatatcc gggctctgtt catgaataga
     1861 agttagtact gaacaactgt ttccatcaaa tccatgtttt aggccattat aacctatatt
     1921 cttcaaagtt tttctaacca cattctgaga atcaattttt gcattggaag ttacttctcc
     1981 ggctacaatt acaatccctg tagtagtcat agcttctact gcaactctag agtctggatc
     2041 ctgagaaatt atttcatcaa gtattgaatc agaaacctga tcacatatct tatctggatg
     2101 gccttcggtt acactttctg aagtgaaaag atagcgcctt gccattttta tttatgacaa
     2161 atcccaagaa tgtctctttt tctagagatc cttttctatt ttgatgaata acacattgtt
     2221 tcctcgaatg actactttcc cataatttgc aacaggattg gcgccattaa attcttctgc
     2281 atccaataat atcaaattca tatatgaatc cacattattc attcggcccc tgtactccag
     2341 ctcgttttta agtctgacag atactttcat atttaatgag cgctgtaaaa ttgttaacgg
     2401 tctttttggt tgctgtggag atgatgacat attaggtttt cacttttgtt ttcaaaaaat
     2461 aagatcgaca ataaaaagtt tctcccaaga tctcttactt tgtatataaa taattataga
     2521 gtttagtttt atgcgcataa tcacaacagg gtcatcatca attgatgata tactgggagg
     2581 tggaattaga acaggcctaa t
//
LOCUS       DASUMD010000148         7630 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1260863, whole genome shotgun sequence.
ACCESSION   DASUMD010000148 DASUMD010000000
VERSION     DASUMD010000148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7630)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7630)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7630
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1260863"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..306)
                     /locus_tag="VFX26_04175"
     CDS             complement(<1..306)
                     /locus_tag="VFX26_04175"
                     /inference="COORDINATES: protein motif:HMM:TIGR01297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HEX5573704.1"
                     /translation="MNLTTVSRKHVLVIVLFLTSVYFVVQIIIGLVIGSLALLSDAGH
                     MLIDVCGLVMALLAITFSQKAATPKRTYGFYRAEILTSLLNSLFLILLSFYILYEAYQ
                     "
     gene            960..1535
                     /locus_tag="VFX26_04180"
     CDS             960..1535
                     /locus_tag="VFX26_04180"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HEX5573705.1"
                     /translation="MNSSKLLLATILGLAISLSVLLTVSVVDQIHAAKYPYDAPLSGQ
                     DEVPAVQTSATGKGEFTVPANGTMKYKVNVTGISNASAAHIHMAKAGENGDVIADLLN
                     TPTSKDKDTAYGMIFRGNLSDSSLKGPMQGKTLDDLAAAMDSGDVYVNVHTAEHPDGE
                     IRGQVANTDKPEGTATANSTNSTVGFSTLTE"
     gene            1852..2715
                     /locus_tag="VFX26_04185"
     CDS             1852..2715
                     /locus_tag="VFX26_04185"
                     /inference="COORDINATES: protein motif:HMM:NF012703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginase family protein"
                     /protein_id="HEX5573706.1"
                     /translation="MVKLFHSNVDSIAQADIVILGVPDESRSHAKRKGASMGPDSLRL
                     ASNYYEFFERGGNRIPICPMSGTLENKKILDIGNVPRDDLYRLVFDIVSTKKIPITIG
                     GDHSITTLILQAIYDTFEGEKISLLYFDAHPDFVSSTRNYYGSVITDSSGYINFTKSI
                     LIGTRAAEMEELKNASKQKLEIITPIDIIEFGINATVKKIIAKCGSNKVYMSIDLDCM
                     DPGVAPGVSVPAPGGLFPLDLIYIIKKISENLQILGMDIVELSPDYDLNQNTANHAAR
                     ILMETIASLKT"
     gene            complement(2864..5134)
                     /locus_tag="VFX26_04190"
     CDS             complement(2864..5134)
                     /locus_tag="VFX26_04190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018193003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDC48 family AAA ATPase"
                     /protein_id="HEX5573707.1"
                     /translation="MSNRKDSNNNDDAGTSLRVAEAEQSDVGRKIARIDPAVARQLDL
                     STGDALEISSMGKKTTVLCWPAREKDTGKGLVRIDGYLRNRLDVGINDSVEIKKVQSK
                     SAEKVTLAPTEPLRIVGAEGYLQEYLLGGLLSTGDIFPLTIMGQRVDLVVISTKPSGP
                     VLMEDSTEVTVSEESEKAIQVAKGDGAPSISYEDIGGIKNEVSRLREMIELPLRHPEL
                     FKRLGVEAPKGVLLHGPPGTGKTLLAKAVAHETNANFYTIGGPEIMSKFYGESEERLR
                     EVFKKAEENAPAIIFIDEIDSIAPKREEVSGEVERRVVAQLLSLMDGMSSRGKVVVIG
                     ATNRINAIDPALRRPGRFDREIEIGVPDRDGRLEILQIHTRGMPLEKDVDLGVIANMS
                     HGFVGADLQAVAKEAGIRALRRVLPEIDLTTENIPSDILKKIVVTMDDFLSVIKEIEP
                     SALREVFVEIPDVNWDDIGGLADVKQELQEAVEWPLKYQALFLHSDATPPKGILLYGP
                     PGTGKTLMAKAAAHESEANFISIKGPELLSKWVGESEKGVREVFRKARQAAPCIVFFD
                     EIDAIAPTRGGAGSDSHVTERVISQLLTELDGLEVLSNVIIIAATNRPDIIDAALLRP
                     GRFDRLLYVPPPEKESRIKIFKIHTSKKPLADDVKIETLAAHTEGYTGADIAALASAA
                     VMLALREHIEKYKDPKKAESAKTELKLHMKHFEEAMKKIRPLSKHEIETYRSIAERFG
                     KPEVTKEVIDRETAIK"
     gene            5710..7536
                     /locus_tag="VFX26_04195"
     CDS             5710..7536
                     /locus_tag="VFX26_04195"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEX5573708.1"
                     /translation="MSQRLLERKVTIMISAIVAAAILFSILAYQYFMRNSSDVQHIAV
                     EQIQSTTLVKVSDLTHILKNKLDLVTINLEILSSSHELVDQRVELGKILLNTAQKTTS
                     SIVDFYSWVDRNGTSIWSSPNLSDTVDEKFKVFSTAAQAYFEKIKDTQVPSYSNKIKL
                     TDGQSGILILYPIIDTQNKTITQNKTNEFKGAVLAGISSETLDNFLQGQISPLSSANL
                     SVVDSSGMMILTGIPKLVGANIFDKKFDTSIGRSVNDNNREKNIINVFRSAVLNPRVG
                     ITDVILDGKDVTASYSPVISNGIHYFTLVLILPHTLASSLDDLVEQQRNFAILAMIII
                     ISSAIGIFFVITYWNKGLRKVVYIQTKELQETTKKLTYHDKLQKEFIDIAAHEFRTPI
                     QSVLGYSEIIHANLKNFDQYFDKIIRNAKRLQKLTEDVLDVSRIEGKNLQLSKSYFDL
                     NQTIKQVIEDHQKEALNKEVQIIFDFKKNIPATVYADEARLQQVIDNLLSNAINFTQN
                     GTISITAYRAQVDTNGEIDESDRESTVVEIKDTGTGINSEMLPRLFDKFATRSMSGTG
                     LGLYISKSIVDSHDGKIWAYNNKDGKGATFTFTLPIDKKDKK"
BASE COUNT         2409 a         1486 c         1347 g         2388 t
ORIGIN      
        1 ctgatatgcc tcatataata tgtaaaacga taacaaaata aggaacaagc tatttagaag
       61 tgatgtcagt atttctgctc gataaaatcc atatgttctt tttggtgtag cagctttctg
      121 gctaaacgtt attgctaaaa gtgccattac cagtccacag acatctatca acatatgccc
      181 agcatctgat aatagggcaa gactcccaat aactagtccg attataattt gaactacaaa
      241 ataaacagaa gtcaagaaca acacaattac caaaacatgc ttacgactaa cagtggttaa
      301 attcaattta ctttcaactc accttttctt atctaattat aatatagtaa aataactaat
      361 aaagaattta accaaaataa aattaaatta aaccacataa cattgaagat atcgaatact
      421 tggttagcat tgatattcat ttgtcttcta aacgggattt tcacacactc gtggaacttt
      481 attatcaatt tttttgtcaa taaaaatatt attgctattg ccactagcca ctaacgatga
      541 gaccttaaga gatttaaatc cctgagcgat ttaaattgtt actgtggaaa tagagcttag
      601 attctcatcc aagttaaccc aaaccgaata tgttagcgag gtcagcggga tggaagaatg
      661 ttttgttctt tctttcaaaa tcacatgaat gtaatgtatc tttcttgtgc aggaacaatt
      721 tgtatatttc ctatagaatt gtactatttg cttgagattt atttgcttga aatttcaatc
      781 aaaccaggtc tgcagttctt gatactttaa actaaatatt agtcgtaggt taacttttcg
      841 cctctactag ccctagtact gtgaaaagga gtgactattg ctccatttcg aagtagtata
      901 aaaaggtttg ttgtcggttt acgtaatata ttttagtcgg taaggaccaa ggttacgaga
      961 tgaattcgag caaattacta cttgcaacca tactggggtt agctatctcg ctgtcggttt
     1021 tgcttactgt atcagtcgtt gatcagatac atgcagcaaa gtatccttat gacgcaccat
     1081 taagtggaca agatgaagta cctgctgtac agactagcgc taccggaaaa ggagagttta
     1141 cagtacctgc aaacggcaca atgaaataca aggttaatgt cacaggtata tctaatgcat
     1201 cagcagctca cattcacatg gcaaaggcag gagaaaatgg tgacgtaatt gcggaccttc
     1261 tcaatactcc tacaagcaaa gataaagaca ctgcatatgg aatgatattc agaggtaact
     1321 tgagtgactc tagtcttaag ggcccaatgc aaggtaagac tttagacgac ctagctgccg
     1381 cgatggactc tggcgatgta tatgtaaatg tgcacactgc agaacatcct gacggtgaaa
     1441 tcagaggcca agttgcaaat acggacaagc cagaaggaac agcaactgct aattcaacca
     1501 attctacagt gggattctct actcttactg aatagtaggt caaagcatcc cctccatttt
     1561 tgatttttaa gaaatcaaat aatttttttt ctttcttcag atacttacca taaactttgc
     1621 taagctagac gatatagtta cagtggttac agcacggagc atttgaatct acacaataac
     1681 aaattttaag atttggcttc ataatattga aggaagaacc aaaattttta aacagtaata
     1741 gtttatgaat tcatctgtat ttcagtatga aatatttaag tctattctac aaaactgaag
     1801 aaaaattggt ccaatataac attgaaatgt atctcttgat acgcatatca tgtggtcaaa
     1861 ttatttcatt ctaatgtaga ttccattgca caagcagaca tagtcatact aggtgtcccc
     1921 gatgagtcaa ggtcacatgc aaaaaggaag ggcgcaagca tgggacctga tagtctaagg
     1981 cttgcttcga actattatga attttttgaa agagggggca ataggatccc tatttgtcct
     2041 atgtcaggca cacttgagaa taagaaaata cttgacattg gaaacgtgcc aagggatgat
     2101 ctgtatagat tggtatttga tatagtatcc accaaaaaaa ttcccataac tattggcgga
     2161 gatcattcca tcacaactct tatcttgcag gcaatatacg atacttttga aggggaaaag
     2221 atatctcttc tatactttga tgcgcatcct gacttcgttt cttcaacacg gaactattat
     2281 ggttctgtta ttaccgactc atcaggttat atcaatttta caaaaagtat tcttataggg
     2341 accagagcgg cagagatgga ggaattaaaa aatgcatcaa aacaaaaatt ggagatcata
     2401 accccaatag acattattga atttggtata aacgctactg ttaaaaagat cattgcaaaa
     2461 tgtggatcaa ataaagtata catgtccata gatctggatt gtatggatcc aggtgtggca
     2521 cctggcgtgt ctgtgcctgc ccccggcggc ctatttcctc tggatttaat ctacataata
     2581 aaaaaaataa gtgaaaattt acagattttg ggaatggata tagtagaatt gtcgcctgac
     2641 tatgacctaa atcaaaatac tgcaaatcat gcagccagaa ttcttatgga gacgatagca
     2701 tcattaaaaa cgtaaattga gtcgtgctaa tatgatttag acgtgttcat ctttttaaac
     2761 aagaaaaaca agaaaacagt attcattcag ataacaaaga aggtgtaatt gaagagcaca
     2821 ttctctgtgg agaaaattgg gaaaaccact tgaagacctc tgcttacttt attgcagttt
     2881 ctctatcaat aacttccttt gtaacttccg gctttccaaa cctttcagcg atacttcggt
     2941 atgtttcaat ttcatgtttt gacaatgggc gaatcttctt cattgcctct tcaaaatgtt
     3001 tcatatgtag ctttaactcg gttttagccg actccgcctt tttggggtct ttatattttt
     3061 caatatgttc tctaagagca agcattactg cggctgacgc aagggctgct atatcagctc
     3121 cagtatatcc ttctgtgtgg gctgctagcg tttcgatttt aacatcatct gccaggggtt
     3181 tttttgaggt gtgaatttta aaaattttga ttcttgattc tttttctggc ggaggcacat
     3241 acagcaatct gtcgaatctt cctggcctca ataatgccgc gtcaattatg tctggcctgt
     3301 tcgtggctgc aatgataatc acattagata atacttctaa accgtcaagt tctgtaagca
     3361 attgactgat tactctttca gttacatggg agtcactccc cgcgccgcct ctggttgggg
     3421 caatggcgtc aatttcatca aaaaagacta tgcatggagc ggcctgtcta gcttttctaa
     3481 aaacttcacg tactcctttt tctgattcgc ctacccattt tgagagtaat tctggacctt
     3541 ttatgctaat aaaatttgcc tcgctttcat gagcggcagc ttttgccatc aaagtcttcc
     3601 ctgttcccgg tggtccgtac aaaagtatac ctttcggagg agtagcatca gaatgcaaaa
     3661 acagtgcttg gtatttcaga ggccattcta ctgcttcttg aagttcctgt ttgacatctg
     3721 cgagacctcc aatatcatcc caattcacat ctggaatttc cacgaaaact tcacgcaatg
     3781 cagatggttc aatttctttt attacgctaa ggaaatcatc catagtgact acaattttct
     3841 ttagtatgtc ggatgggatg ttctctgttg taagatcaat ttctggtagc actcttctaa
     3901 gagccctaat tccggcttct tttgctacgg cttggagatc ggctccaaca aagccatgtg
     3961 acatatttgc gatgactccc agatcaacat ctttttctag aggcattcct ctggtgtgta
     4021 tctgaagaat ttccaatctg ccatccctat ctggcacacc gatttcgatt tctctatcaa
     4081 atctaccagg tcttctgagt gcaggatcaa ttgcattaat tctgttagta gcacctatta
     4141 ctactacctt gccccttgaa gacataccgt ccatcaatga tagaagctgg gccactactc
     4201 tcctttcgac ctctcctgat acctcttctc ttttaggtgc aatcgaatca atttcgtcaa
     4261 tgaagataat tgccggtgca ttttcttcgg cctttttaaa aacctccctt aatctttcct
     4321 ctgactcgcc ataaaattta ctcattattt caggaccgcc gatggtatag aaatttgcgt
     4381 tagtctcatg cgctacagcc tttgctaaca gtgtcttgcc agtgccagga ggaccatgca
     4441 gtaatactcc ctttggcgct tccacaccca gccttttgaa gagctcagga tgtctgagtg
     4501 gaagctctat catttctctt aaacgtgata cttcattttt tataccacct atatcctcat
     4561 atgaaattga aggcgcaccg tccccctttg caacttgaat tgctttttcg ctctcttcag
     4621 acacagtgac ttcagtagag tcttccatca aaactggacc tgagggtttg gtggagatga
     4681 ctaccagatc gaccctctga cccattatcg tcagaggaaa aatgtcgccg gtacttagca
     4741 ggccccccaa gagatactct tgtaggtaac cttccgcacc tacaatccgt agtggttctg
     4801 ttggagctag tgtaactttc tctgcacttt ttgattgcac cttctttatt tccacagaat
     4861 cgttaattcc tacatccaat ctgtttctca ggtagccgtc tattcttaca agaccttttc
     4921 ctgtgtcttt ttctcttgca ggccaacata gaaccgtggt tttcttgccc atggatgaaa
     4981 tttccagtgc atctcctgta gataaatcga gttgccgagc aactgcagga tcaatcctgg
     5041 caattttcct tccaacatcg gattgctcag cttcggctac tcttaaactt gtaccagcat
     5101 catcattatt gtttgaatcc tttcgattac tcaattagct tcatcactta atacgcatcc
     5161 attatattta aaaatcacat tttttgacag gaattcagat tatcaagtca taataatatt
     5221 aactatgtgt atatcaccat agttcatccc aagcatcatt attgggcata gatgtttcaa
     5281 atatacttca tcttatgacc agtggcaata ttgaaaaagt aatattcatc gtatgcagta
     5341 ttggtaacga tattgaatat tttcaatttg taatcatcat ctacagtttg gacttattaa
     5401 aaagaacaaa aagaacactt aattgaagga agttaaatct tcatacacta tgacttgata
     5461 atatcaataa atatctctcc ataaatgaaa ctcagcttct tgaaaatgtt tagacatgtt
     5521 actcgatcaa atctataacc attataaatg atacaatctg tgggatcata aatttctctt
     5581 tcacataaca cacatctaac catattgtta attgattcga attgtataaa agacttatat
     5641 ctcgtggcca actctctcaa aactgacttg tataatatat ttaagctgcc gcgtctatct
     5701 accttttaat tgtctcaaag actgttggaa agaaaggtta caatcatgat ttctgccatt
     5761 gtagcagctg ccatattatt ttccattctt gcttatcagt attttatgcg aaactcatct
     5821 gatgtacagc atattgctgt ggaacaaatt cagagtacta ctttggtcaa ggtttccgat
     5881 cttactcata ttcttaagaa taagcttgac ttggtaacca taaatctcga aattctttct
     5941 tcatcacatg aattagttga ccaacgtgta gagttaggca aaattttgtt gaatactgct
     6001 caaaaaacaa catctagtat tgtagatttt tacagctggg tagacaggaa tggaacgagt
     6061 atttggtcca gtccaaattt aagtgatact gtggatgaga aatttaaagt attttcaaca
     6121 gcagctcagg cttactttga aaaaattaag gatacccaag ttccatcata tagtaataaa
     6181 attaaattga cagatggcca gtctggaata ctaattctct atccaataat tgatactcag
     6241 aataagacta taacgcaaaa caagaccaat gaatttaagg gtgctgtttt agccggcatt
     6301 agctccgaaa ctctagataa ttttctgcag ggccagatat ctcctttatc ttcagcaaac
     6361 ctatccgttg ttgactcaag cggcatgatg attctgacag gtatacccaa attagtcggt
     6421 gctaatatat ttgacaaaaa atttgacact tcaataggaa gatcagttaa tgataataat
     6481 cgcgaaaaaa acataataaa tgtatttaga tctgccgtac taaacccaag ggttggtatt
     6541 actgatgtaa tattggatgg gaaagacgtt acagcatcgt attctccagt catatcaaat
     6601 ggcatacact attttactct tgttttaatt ttacctcaca ctttagcatc ctcgctagat
     6661 gaccttgtcg aacagcagag aaattttgct atcctggcca tgataattat tatctcaagt
     6721 gctataggaa ttttttttgt gattacatat tggaacaagg gattacggaa ggttgtgtat
     6781 atacaaacaa aggaattaca agaaacaacc aagaaattga cataccatga taaacttcaa
     6841 aaagaattca tagacattgc cgcgcacgag tttagaaccc caatccaatc agtcttgggt
     6901 tattcagaga taattcacgc aaatcttaag aattttgatc agtacttcga caaaataatt
     6961 agaaatgcaa aaagattgca aaagttaaca gaagacgttc ttgatgtatc tagaattgag
     7021 ggaaagaatc tccaattatc caaatcttat tttgatttaa accaaacaat aaagcaggta
     7081 atcgaagatc atcaaaaaga agcgttgaac aaagaggtac agataatttt tgacttcaaa
     7141 aagaacatcc ctgctacagt gtatgcagat gaggcaagat tacaacaggt tattgacaat
     7201 ctattatcaa atgcaattaa ctttacccaa aatgggacca tctcgataac agcttataga
     7261 gcccaggttg ataccaatgg ggaaattgac gaatcggata gagagtccac ggtagtagaa
     7321 ataaaggaca ctggcacagg aattaattca gaaatgttac caagattgtt tgataaattc
     7381 gcaacaaggt ctatgtctgg aactggattg ggtctgtata tttcaaaaag tattgtggat
     7441 agtcacgatg gaaaaatatg ggcgtataac aataaagatg gcaagggagc gacatttact
     7501 tttacacttc ccattgataa aaaggataaa aaatagaatt ctaattctat aagtgttaga
     7561 tgaaactaac aaattcatga atcctgaatt ttgcaaatac tttactaatc acataatcac
     7621 atgcaaatta
//
LOCUS       DASUMD010000149         8713 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_930058, whole genome shotgun sequence.
ACCESSION   DASUMD010000149 DASUMD010000000
VERSION     DASUMD010000149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 8713)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8713)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8713
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_930058"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..326
                     /locus_tag="VFX26_04200"
     CDS             <1..326
                     /locus_tag="VFX26_04200"
                     /inference="COORDINATES: protein motif:HMM:NF014637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="putative RNA uridine N3 methyltransferase"
                     /protein_id="HEX5573709.1"
                     /translation="GYDVQFADSLSALLESTESEVLMTSVEGSQFTKHVNDLMSKIKA
                     SKNLLVVFGGPKFGLRKILECENKKISSNNNLMNMFPMQGTQTVRFEEAILGTLSIIN
                     NYLHA"
     gene            436..1434
                     /locus_tag="VFX26_04205"
     CDS             436..1434
                     /locus_tag="VFX26_04205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HEX5573710.1"
                     /translation="MGHRKYSAPRRGSMAFYPRVRARSLETRIRTWAVPNLEKSSLLG
                     FAGYKVTNLNVLSVDDREKTPNYGKNIMNSSTLIATPPLKIIGIRAYAETTYGKSVIF
                     DAFAKDSDKYLSKKASFNFKEGKLEEISAHVDKIKHVVAIVSSYPTSASLSQKKPFVW
                     EIAIGGKDTKSKIDYVVNNFGKQVNIKEVFETGQFIDISSITRGKGVEGPITRFGVKR
                     KQHKSRKSVRALGTLGPISPAVVTYTVPRQGQRGFHQRTEYNKRILIISNSEKDNDIK
                     INPKGGFEHYGMVKNDYIIVKGSVPGVPKRLVKMRFPIRSVSKKVVEPKVLEVLVK"
     gene            1431..2243
                     /gene="rplD"
                     /locus_tag="VFX26_04210"
     CDS             1431..2243
                     /gene="rplD"
                     /locus_tag="VFX26_04210"
                     /inference="COORDINATES: protein motif:HMM:NF012782.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HEX5573711.1"
                     /translation="MKVALKDLRGKEVKSLELPSVFNTPYRPEIIKKVYVNVLSNKFQ
                     PQGRYPAAGEMVSAESRNTGLGIARIARARGEGFQRAGQAAGVASVRAGRLAHPPVSW
                     KKNHKKINKKEKQLGFCSAIAATSNKDIIENRGHNVGKISEFPIVVSNDLEKMTRTSE
                     LRKTLLSLGLEEDLKRSTNIVRIPSGKSRRRGRKKHSALSCLIVVSKDSPITKLKKSL
                     PGVNVVSIENLSIMDLVPGTKPVRLTIYTKNAIDSMNKINTVWSRVQSMVTE"
     gene            2243..2518
                     /locus_tag="VFX26_04215"
     CDS             2243..2518
                     /locus_tag="VFX26_04215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HEX5573712.1"
                     /translation="MSKESEDNIHSIILRPYITEKTFNLIEKENKLTFIVADSASKKD
                     VNEAIKTMYESNVKEVNIFRTIQGKKAIVKFTKDDEARQLATKLGLV"
     gene            2572..2979
                     /locus_tag="VFX26_04220"
     CDS             2572..2979
                     /locus_tag="VFX26_04220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HEX5573713.1"
                     /translation="MVREFRFRGYNVEQLKNLSIEALLPLLNARQRRSLDKRVGKYMD
                     DQKRKLRERIKSVREGTSNEAIRTHVRDMIILPDMVDITINIHNGKEFTPITIKPEMI
                     GHYLGEYAITNKRVQHGAPGVGASRSSLYVPLK"
     gene            2985..3458
                     /locus_tag="VFX26_04225"
     CDS             2985..3458
                     /locus_tag="VFX26_04225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HEX5573714.1"
                     /translation="MPTYSYSFSQFDKNKHVRASLRETDISHKHAREIALAIKGLSIE
                     RARNVLDQAIEKKVAIPYRRYHNEVAHRSNISDGFFSGRFPKKASEEFLRLLDNLESN
                     AEYKGMDLDRLEIVSCVIHKGTKLKRFIPRAMGRSSPKVDTLTHVEIVAREGKVY"
     gene            3455..4234
                     /locus_tag="VFX26_04230"
     CDS             3455..4234
                     /locus_tag="VFX26_04230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HEX5573715.1"
                     /translation="MSAIKNVMKNNFRNMELNEYLSSSLTEAGYGGAEVQKTPIGTKI
                     TLFVIRPGLVIGRKGSGIRDLTARLEQNFNLENAQVSVTEVTKPELNPHIMANRIAQL
                     IERGTAFRRASLWTINTIMGAGALGVEITISGKLRGERAHFEKHTAGIIPKSGKVAEE
                     VVRSSTNSLLTKMGLVGIKLKISLKEEIHRDFDLIAESQPKDETEIPSESEGESQKES
                     ESEDKSQTNEEKLPNDSEIKAESKDIINSEVKEIAVNKSET"
     gene            4234..4440
                     /gene="rpmC"
                     /locus_tag="VFX26_04235"
     CDS             4234..4440
                     /gene="rpmC"
                     /locus_tag="VFX26_04235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HEX5573716.1"
                     /translation="MARLKLKTLREFNDVDLESKLSEIRADLLKLRIENSKGTLKKET
                     GNMKWKRRDIARILSILKEREVAK"
     gene            4437..4700
                     /locus_tag="VFX26_04240"
     CDS             4437..4700
                     /locus_tag="VFX26_04240"
                     /inference="COORDINATES: protein motif:HMM:NF013985.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030677 - ribonuclease P complex
                     [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0001682 - tRNA 5'-leader removal [Evidence
                     IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein subunit"
                     /protein_id="HEX5573717.1"
                     /translation="MTFKDYMLKYEFIGRNAQIEYGPISCQRKINGKIVFETKNTISL
                     ANNLKTYVIPKQSINRLELIFKDEICLMNGSMIIGRPEDRLLK"
     gene            4714..5046
                     /locus_tag="VFX26_04245"
     CDS             4714..5046
                     /locus_tag="VFX26_04245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020266962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HEX5573718.1"
                     /translation="MTRNIGVTVSQPKRTCDDELCPFHGKLSIRGRILTGITVSSKAH
                     KMIVVSREYPRLVRKYKRYERSSSKVHAFLPSCMDVKEGDGVKIAECKPISKTVSFVT
                     VEVIKSGV"
     gene            5036..5470
                     /locus_tag="VFX26_04250"
     CDS             5036..5470
                     /locus_tag="VFX26_04250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HEX5573719.1"
                     /translation="MASKSRAVSAKGVEEFKPYITRALPITANLVCADNTGAKILRIA
                     QVTRIKGRHSRMPAAAVGDFVNVTVKKGNAELRKQMFGAVIIRQKYPIRRLSGVRLSF
                     EDNAAVLVTPEGEIKGTDIKGPVAAEAAEKWPRIANLASLII"
     gene            5481..5885
                     /gene="rplX"
                     /locus_tag="VFX26_04255"
     CDS             5481..5885
                     /gene="rplX"
                     /locus_tag="VFX26_04255"
                     /inference="COORDINATES: protein motif:HMM:TIGR01080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HEX5573720.1"
                     /translation="MFYKLISKHKRDKFLGANLSENLREQHRKRSMRVIKGDTVRILR
                     GEYVGIEGKVEKVNTEKSTLSIEGVQREKIRGGNVKVQVHASNVQIISLKTDDDYRMK
                     GTTKSKDKNTNIKKGKGTKKSAVKKELVGEEL"
     gene            5888..6607
                     /locus_tag="VFX26_04260"
     CDS             5888..6607
                     /locus_tag="VFX26_04260"
                     /inference="COORDINATES: protein motif:HMM:NF013095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4e"
                     /protein_id="HEX5573721.1"
                     /translation="MAKKGGDKRLKRQLAPRFWQINRKAARFILNTMPGPHTRKFSYP
                     IGVVLRDLLHVCSDIREVKRSLNNGLISVDGKMIHHPNFPIGLMDTVEIKPSNEFYRF
                     VPSNGHPLLPIKISANEKNLKLEKIKSKISSKKNVYQYCLHDGRTFLSEESYNVNDTC
                     LIELPKFGIKNHVQLKEGCSVIVTRGENAGNIGKVEEIKSGSFSLPKRILVSMGDKTV
                     ELPIDIVMAIGTDTSLIQVSK"
     gene            6609..7118
                     /locus_tag="VFX26_04265"
     CDS             6609..7118
                     /locus_tag="VFX26_04265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018003460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HEX5573722.1"
                     /translation="MSTVNNMKQISLEKVVINIGVGKSGEPLERAKNALGELTSRKPT
                     QCGAKNNVRDFGIHKGEPIGAKVTLRNTEAIEFVKRVIQSKDNQLKKSSFDNYGNISL
                     GIREHIDIPGAKYNPDIGIFGMNVCISLSRPGYRIINKSNARKMGRKHRISKDEAIEF
                     FKNLGVEMI"
     gene            7118..7297
                     /locus_tag="VFX26_04270"
     CDS             7118..7297
                     /locus_tag="VFX26_04270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HEX5573723.1"
                     /translation="MPKPREYDVTGRRQRVHGKGTRWCKRCGCYSGLIQAYNIMLCRQ
                     CFREVAIKLGFKKYE"
     gene            7306..7707
                     /locus_tag="VFX26_04275"
     CDS             7306..7707
                     /locus_tag="VFX26_04275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HEX5573724.1"
                     /translation="MNELPALNILSNLFTTLYNNEVRRKKECIVSPSSRFSSEVLRVM
                     QKHRYIGEFEQIDDSRAGKFKIQLLAKINKCGIVTPKFSVRKNQYLNWERQFLPAYNM
                     GILIVSTSKGVMTHHEAQEMGIGGVLVGYVY"
     gene            7697..8233
                     /locus_tag="VFX26_04280"
     CDS             7697..8233
                     /locus_tag="VFX26_04280"
                     /inference="COORDINATES: protein motif:HMM:NF004037.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HEX5573725.1"
                     /translation="MSTNEHDSTLEIPEGISVALEDRIISVKGKLGTIKKDFTKLPAN
                     LTIENNIVKIRPYGTRRKDFAISKTAQSIINNMIKGVQNGYKYKMKVVFAHFPITVKV
                     KDGKVYVENFFGERKARISKIVGESTKVAIEGDDVVISGPHLEHVSQTAANIELSTRV
                     KNKDQRVFLDGVYIYSRE"
     gene            8299..>8713
                     /locus_tag="VFX26_04285"
     CDS             8299..>8713
                     /locus_tag="VFX26_04285"
                     /inference="COORDINATES: protein motif:HMM:NF012695.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEX5573726.1"
                     /translation="MITVILAGGLGKRLRPLTSDRPKPMIQINNIPIIELQVNWLKKC
                     GISDIIVLVGHLKEKIKHHLDDGKKFGVNISYIEENVPLGTGGALKNAKNHIIQNGNT
                     DSGFFVINGDILTNLDLFTISEKGSMTLALVPLKST"
BASE COUNT         3247 a         1266 c         1874 g         2326 t
ORIGIN      
        1 gggggtatga cgtccagttt gcagattctt tatcagcatt gctagagagt actgaaagcg
       61 aggtcttaat gacttcggtg gagggttcgc aatttacaaa acatgtaaat gatcttatga
      121 gcaaaataaa agcgtcaaag aaccttcttg ttgtcttcgg tggccccaaa tttggattga
      181 gaaaaatact ggaatgtgaa aacaagaaaa tttcgtccaa taacaatctc atgaacatgt
      241 ttcctatgca aggtactcaa acggtaaggt ttgaagaggc gattttgggt acgctatcca
      301 taatcaataa ttacttacac gcttgattcg acttcatatc atcattattg aaatcgagat
      361 ggcatgctta tcataatttg cttgctgtgt taaagttatt aatttattaa tgggatcgca
      421 aaaaacggat taatcatggg tcacagaaaa tatagtgcac ctagacgtgg aagtatggca
      481 ttctacccga gagtgcgtgc acgaagtctc gaaactagga ttagaacctg ggcggttcct
      541 aatttggaga aatcatcatt attaggtttt gctgggtata aagttacaaa tttaaatgta
      601 ttatctgtcg acgataggga aaaaactcca aactatggca aaaatatcat gaattcatct
      661 actctaattg ctactcctcc attgaaaata attggaataa gagcatacgc agaaacaaca
      721 tatggaaaaa gcgtaatttt tgacgctttt gcaaaagata gtgacaagta tctctcaaaa
      781 aaggcatcgt ttaattttaa ggaaggtaaa ttagaagaaa tcagtgctca tgttgataaa
      841 attaaacatg tagttgcaat tgtgtcatct tatccgacta gtgcttctct atctcaaaag
      901 aaaccgttcg tttgggaaat agccatcggc ggaaaggata caaaatcaaa aattgattat
      961 gttgttaaca attttggaaa acaggtaaac ataaaagaag tctttgaaac aggacagttt
     1021 attgacattt catccataac gcgaggaaag ggagttgaag gtcccattac tagattcgga
     1081 gtaaagcgaa aacagcataa atcaagaaaa agtgttagag cacttggaac tttggggcca
     1141 atttctcctg cagttgttac ttatactgtc ccgagacaag gccagagagg atttcatcaa
     1201 agaactgaat ataacaagag aattttgatt atatcgaatt ctgaaaaaga taatgatatc
     1261 aagattaatc caaagggcgg atttgaacac tatggcatgg ttaaaaatga ctacataatt
     1321 gtgaaaggtt ctgtgcctgg agttcctaaa agattagtca agatgcgttt tccgattaga
     1381 tctgttagta agaaagtagt cgaaccaaag gttttggagg tattggtgaa atgaaagttg
     1441 cacttaaaga tcttcgagga aaggaagtta aatccttgga actaccatct gtttttaata
     1501 caccttatcg accagagatt ataaaaaaag tgtacgttaa tgtactttca aacaagttcc
     1561 agccccaggg aaggtatcct gcagcaggag agatggtaag tgcagaatct cgtaatactg
     1621 gcttgggaat agctagaata gcaagagcaa gaggtgaagg gtttcaacgt gctggtcagg
     1681 ctgcgggtgt tgcaagcgtc agagctggaa ggttagctca tcccccagtt tcgtggaaga
     1741 aaaatcacaa aaaaataaac aagaaggaaa aacagttagg tttctgttca gcaattgcag
     1801 caacgtctaa taaagatata attgaaaata ggggccacaa tgtcggaaaa atctctgaat
     1861 ttccaattgt ggtttcaaat gatttagaga aaatgacaag gacttcagaa ttaagaaaaa
     1921 cattactctc attagggcta gaagaagatc ttaagagatc aacaaatata gtaaggatac
     1981 catcgggaaa atcccgacga cgtggaagaa agaaacactc tgctttgagt tgtctaatag
     2041 ttgtatcaaa agactctcca ataactaaat taaaaaaatc gttgcctggt gttaatgttg
     2101 tctcaataga aaacctcagt atcatggacc tagtacctgg aacaaaacct gttaggttaa
     2161 ctatctacac aaaaaatgca attgattcta tgaataaaat aaatacagtt tggtcaagag
     2221 tacagagtat ggtgacagaa taatgagcaa agaatcagaa gataatattc attcaatcat
     2281 attacggcct tatattacag agaagacttt caatctcata gaaaaggaaa ataagttaac
     2341 ttttattgtc gcagacagtg caagtaaaaa agatgtaaac gaagcgatta agacaatgta
     2401 tgaaagtaat gtcaaagagg ttaatatctt caggacaatt caaggaaaaa aagcaattgt
     2461 taaatttacc aaagatgacg aagcgcgcca actagctaca aaattaggtt tggtctaagt
     2521 tgatttatct agttaaattt aaaaggagta ttttggagct gattatgtta gttggttcgt
     2581 gagtttagat ttagaggtta taacgttgaa caattaaaga atttatccat agaagccctt
     2641 cttcctttgt taaatgctag acaaaggcgg tcattggata aaagagttgg aaaatacatg
     2701 gatgaccaaa agagaaaatt acgtgagcgt attaaaagcg tcagggaagg tacttccaat
     2761 gaagctatac gaactcatgt tagagatatg ataattcttc cagacatggt agacataact
     2821 atcaacattc ataacggcaa ggagtttact ccaattacta taaaaccgga gatgattgga
     2881 cattatttgg gtgagtatgc tattacaaac aaaagagttc agcacggtgc gcctggagtg
     2941 ggagcttcca gatcaagtct atatgtgcct ttgaagtgat ttagatgcca acatattctt
     3001 actctttttc acaatttgat aagaacaaac atgtcagagc ctccttaaga gaaaccgaca
     3061 tttcacacaa acatgccaga gaaattgctc tagcgataaa gggactgtcg attgaaagag
     3121 caagaaacgt tttagatcaa gctatcgaaa aaaaagttgc gatcccttat agaagatatc
     3181 ataatgaagt ggctcacagg tcaaatatta gtgatggttt tttttctgga aggtttccaa
     3241 agaaggcttc tgaagaattt ttacgacttt tagataattt agaatcaaat gcagaataca
     3301 agggtatgga ccttgatagg ttagaaatag tgtcttgcgt tatccataag gggactaaac
     3361 ttaagcgatt tattcccaga gctatgggaa ggtcaagtcc taaagttgac acattgacac
     3421 atgtagagat tgtggccaga gagggtaaag tatattgagt gcaataaaaa acgtaatgaa
     3481 gaataatttc agaaacatgg aactcaacga atatttgagt tcttctttaa ccgaagctgg
     3541 atatggagga gcagaagttc aaaaaactcc tatagggact aaaataacac tttttgttat
     3601 tagaccaggt cttgttattg gaagaaaagg aagtggaatt agagatttga cagctagatt
     3661 agaacagaat ttcaacctgg aaaatgcaca ggtttctgtc accgaggtta caaaacctga
     3721 attaaatccg cacattatgg caaatagaat tgcacaactt attgagaggg gaacagcatt
     3781 tagaagggca tcattatgga caataaatac tatcatgggc gctggagccc tgggagtaga
     3841 gattacaatt tctggtaagc ttagaggtga acgggctcat ttcgaaaaac atacagcagg
     3901 aatcattcct aagagcggaa aggttgctga ggaagtggta agaagtagca caaatagctt
     3961 gttaacaaaa atgggtctag taggaataaa actgaagatt tcattaaaag aagaaattca
     4021 tcgtgatttt gatttgatcg ctgaatctca acccaaggat gaaactgaaa ttccaagcga
     4081 gagtgaaggt gagagtcaaa aggagagcga aagtgaagac aagagtcaaa ccaatgagga
     4141 gaaacttcca aatgattcag agataaaggc agagagtaaa gatattatta atagtgaagt
     4201 taaggaaata gccgtgaata aaagtgaaac gtaatggcta gacttaaatt aaaaacgtta
     4261 agagaattta atgacgttga tttagaatca aaattgtctg aaattagagc ggatctgttg
     4321 aaattgagaa ttgagaattc aaagggcact cttaagaagg aaactggaaa tatgaaatgg
     4381 aagagaagag atattgctcg aatactttca attttgaagg aacgggaggt agcaaaatga
     4441 cgtttaagga ttacatgctg aaatatgaat tcataggacg taatgcacag atagagtacg
     4501 gaccgattag ctgtcaaaga aagattaatg gtaaaattgt ttttgaaact aaaaatacaa
     4561 tttcacttgc caataatttg aaaacatatg ttatacctaa acaatcaatt aatagattag
     4621 aactgatttt taaagatgag atttgtttaa tgaatggttc tatgataata ggtaggcccg
     4681 aagatcgttt actgaaatga tgggtgatag agaatgacaa gaaatattgg agtaacagtt
     4741 tcacagccaa aaagaacttg cgatgatgaa ctatgtccct ttcatggtaa actttcaata
     4801 agaggaagaa tattgacagg gatcactgta agctcaaagg cacataaaat gatagtagta
     4861 tctcgtgagt accccagact ggtgagaaaa tacaaaaggt acgagagaag tagttcaaag
     4921 gtccacgcat ttcttccttc atgtatggat gttaaagaag gtgacggagt aaagattgca
     4981 gaatgtaaac cgatatcaaa aacagtatca tttgtaactg tggaggtaat aaagagtggc
     5041 gtctaaaagt cgagcagtct ctgcaaaagg agtagaggaa tttaaaccat atatcacaag
     5101 ggcattacct ataactgcaa atctggtttg tgctgacaac acgggtgcaa aaatattaag
     5161 aattgctcaa gtaacacgta tcaaaggtag acattcaagg atgccagctg ccgcagtagg
     5221 ggattttgta aatgtaactg taaagaaagg aaatgcagag ctgcgaaaac aaatgtttgg
     5281 agctgtaatt atcagacaaa aatatcccat caggagatta agtggtgtcc gattatcatt
     5341 tgaagacaac gcagcggtgt tggttacacc tgaaggggaa ataaaaggaa ctgatataaa
     5401 aggaccggta gctgccgaag ccgcagaaaa gtggccgaga atagcaaatt tggcatcatt
     5461 gataatatga ggaaatgata atgttctata aactgatttc aaaacataaa agggataaat
     5521 ttttgggagc caacctgtct gaaaacttaa gggaacaaca cagaaagcga agcatgagag
     5581 tcattaaggg tgacactgtt agaatattaa gaggagaata tgttgggata gaagggaagg
     5641 tagagaaggt gaatactgaa aaatctacgc tctctatcga aggtgtccag agagaaaaaa
     5701 tacgtggagg taatgtgaaa gtacaggttc atgcttcaaa tgttcagatc atttctctca
     5761 agacggatga cgattatcga atgaagggta ccacgaaatc aaaagataag aacacaaaca
     5821 taaaaaaagg gaagggtacg aaaaaatcag ctgttaagaa ggaattggtt ggagaagaat
     5881 tataatcatg gctaaaaaag gaggagataa gagactaaaa agacaacttg ccccgcgttt
     5941 ctggcaaatc aatagaaaag ctgcaaggtt tattctcaac acaatgcctg gaccacatac
     6001 tagaaaattt tcctatccta taggtgtggt attgcgtgat cttttacatg tttgctcaga
     6061 tattcgagaa gtaaaaaggt ccttaaataa cggattaatt agcgtcgatg gcaaaatgat
     6121 tcatcatcca aactttccga ttggtttgat ggataccgtt gaaataaaac cttcaaatga
     6181 attttacaga tttgtacctt caaatggaca cccactatta cctattaaaa taagtgcaaa
     6241 tgaaaaaaat ctaaagttgg aaaaaatcaa atctaaaatt agttcaaaga aaaatgtata
     6301 tcaatattgt cttcatgacg gcagaacatt tctaagtgaa gaatcttata atgtaaatga
     6361 tacatgtttg atcgaattac ctaaatttgg tatcaaaaat cacgtacagc taaaggaagg
     6421 atgcagtgtt attgtaacta gaggcgaaaa cgccggtaat attggaaagg tggaagaaat
     6481 taaatcggga tcattttctc ttcctaaacg cattttagtc tcaatgggtg acaaaactgt
     6541 agaattaccg atagacattg tcatggcaat tgggactgac acttcattaa ttcaggtaag
     6601 caagtaatat gagtacagta aataatatga aacaaatcag cttggaaaaa gttgtaatta
     6661 atattggtgt aggaaaatct ggtgagcctt tagagagggc caagaatgcg ctaggagaat
     6721 taacctctag aaaacctact caatgtggag caaaaaataa tgtaagggat tttggtatcc
     6781 ataaagggga accaattggt gctaaagtta cactcagaaa tactgaggca atagaatttg
     6841 tcaagagagt aatacaatca aaggataacc aattgaaaaa atcatcattt gataactatg
     6901 gaaatatttc tttaggaata cgagaacata ttgatattcc gggagcaaaa tataatccag
     6961 atattggaat atttggaatg aatgtctgca tatcgttgtc aagacccggt tacagaataa
     7021 ttaacaagag taatgcaaga aaaatgggaa ggaaacatag aatttcaaaa gatgaggcca
     7081 ttgaattttt caagaatcta ggagttgaga tgatctagtg ccaaaaccaa gagaatatga
     7141 tgtcacaggt agaagacaac gtgtccatgg aaagggcacc agatggtgca agcgatgtgg
     7201 ttgctattct gggttaattc aagcttacaa tattatgcta tgtagacaat gcttcagaga
     7261 agtagcaata aaattaggct ttaagaaata tgaatagaaa aatgagtgaa tgagttgcct
     7321 gcattaaaca tactgtcaaa cctttttacc actttgtaca ataacgaagt tagaagaaaa
     7381 aaagaatgca tcgtaagtcc atcatcacga ttttctagtg aagttctgcg agtaatgcaa
     7441 aaacatcgat atatagggga atttgaacag atagatgatt ctagggctgg caaatttaag
     7501 attcaacttt tagcaaaaat aaacaaatgc ggaatagtaa ctccaaaatt cagtgttaga
     7561 aaaaaccaat acctgaattg ggagagacaa tttttacctg cgtataatat gggcatttta
     7621 atagtttcaa caagcaaggg tgtcatgaca catcatgagg ctcaagaaat gggaatagga
     7681 ggagtattgg tcggatatgt ctactaatga acatgattca acattggaaa taccagaagg
     7741 catttcagta gccttggaag atagaattat ttcagttaag ggtaaactgg gtacaattaa
     7801 gaaggatttt acaaaacttc cggctaactt gacaattgaa aacaatattg taaaaattcg
     7861 accttatggt accagaagga aggattttgc aatttcaaaa accgcacaaa gcataattaa
     7921 caacatgata aaaggtgttc agaatggcta caaatataaa atgaaagtag tgttcgcaca
     7981 ttttccaata accgtcaagg tcaaagacgg caaagtgtat gtagagaact ttttcggtga
     8041 gagaaaagcc agaatatcaa agattgtagg agaatctaca aaggtagcga tagaaggcga
     8101 tgatgtggtg atctcggggc cccaccttga gcatgtttct caaacagctg ccaacataga
     8161 gttatcaaca agagttaaga acaaggatca gagagttttt cttgatggtg tatacatcta
     8221 ttctcgagaa tagagtgtac aacagctatt aaatttggga tgacttttat atagaatatt
     8281 tgtgcaagtg aggattaagt gataacagtt atacttgctg gcggtttggg aaaaagactg
     8341 aggccattaa cgtctgacag gccaaaaccc atgatccaaa ttaataatat tccaattata
     8401 gagttgcagg taaactggct aaaaaaatgt gggatatctg atattatagt actagtagga
     8461 catcttaaag aaaaaataaa gcatcatcta gatgatggca aaaaatttgg agttaatatc
     8521 agttatatcg aagagaacgt accactggga acaggcggtg ctctaaagaa tgcgaaaaac
     8581 cacattattc agaatggaaa tacggattct ggcttttttg taattaatgg agatattttg
     8641 actaatttgg acctttttac tatatctgaa aaaggatcaa tgacacttgc gttagttcct
     8701 ctgaaaagta cgt
//
LOCUS       DASUMD010000150        10009 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1151427, whole genome shotgun sequence.
ACCESSION   DASUMD010000150 DASUMD010000000
VERSION     DASUMD010000150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 10009)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10009)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10009
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1151427"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(137..1666)
                     /locus_tag="VFX26_04290"
     CDS             complement(137..1666)
                     /locus_tag="VFX26_04290"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HEX5573727.1"
                     /translation="MTELNLHKIEKKILLSLVKHDKTDIEKLSSVTNLSLDNVRRGIE
                     WLKYKGMVSVSVHKDSTVQLISERSNDGRPGDKPHVSENLTLPERRIVNAIKNKHRKN
                     IKIGELAKLCSMSNIEFSVGIQNALRNGWLNKAEDTLKITDNSENLSLEETLLEKISR
                     LNKIKLSELSNKELHGFTLLKKRPGYLKETIEKTFDISLTNEGKKVASNIKNDGEGGI
                     GAITSEILGTGKWKNKEFTEIDVTSPVRSYAMGRTHPLTDIINEIREIFVSMGFSEIE
                     GSTIQSCFWNFDVLFTPQDHPARDMQDTFYLSNLTDDEEIDPVISNKVSNFHKTEWSY
                     DWDIEKSKQTVLRTHTTPVTIKYLSKSKLNSGRIFSIGRVFRNEKMSYKHLMEFHQIE
                     GIVIGKTVNLRDLMGLQKQFYSKLGLERVKFWPTYFPYTEPSLQSMVYIDKLGKWVEL
                     FGMGMFRPEVTQSVGILNNVLAWGGGLERIAMIRYGLDDVRELYDNKLSWLRMQPICP
                     L"
     gene            1740..2882
                     /locus_tag="VFX26_04295"
     CDS             1740..2882
                     /locus_tag="VFX26_04295"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HEX5573728.1"
                     /translation="MSDSFKDDYSDDFEVTPWKVEGSVDYARLIKKFGTQEITDEILE
                     KIKSFTGELHPLLRQKFFFSHRDLDWILDKYENNEKFYLYTGRGPSGMVHLGHLMPWF
                     LTKHLQDKFDSNLLFQITDDEKFLFGDKTMDEINKNVYENILDIIAIGFKKSKTKIIV
                     NSRHIKHLYSNSLEIAKRITFSTAKSIFGFTNSTNIGMIGFPPLQGVPCFLPSIIEGK
                     PTPVLIPAAIDQDPYWRLTRDIAEKIGFYKPAQIHSKFLPSLQTVGKMSSSNPETALF
                     TTDDPDIIEEKISNAFTGGQPTISLQKKLGANPAVCSVFSYLKYLFDTPGESNERELK
                     CRSGNLLCGECKHDLSNHSTSFISMFQERREKAKDSISDFMYSEDS"
     gene            2887..3180
                     /locus_tag="VFX26_04300"
     CDS             2887..3180
                     /locus_tag="VFX26_04300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573729.1"
                     /translation="MDKVTRFECLDSYETEKLGSMLLPDKGSVHFVIEVIKIVDNEIV
                     LMLKDKSCHAVLMKDNINAVKLREFVRELILGPVVVIRTFGQENILNVVHQTS"
     gene            complement(3276..3743)
                     /locus_tag="VFX26_04305"
     CDS             complement(3276..3743)
                     /locus_tag="VFX26_04305"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: protein motif:HMM:NF001985.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HEX5573730.1"
                     /translation="MFDIVATGGTFDILHKGHYMLLLKAFEVGRHVIIGVSSDNYATL
                     KKKKITNKYSIRQEKLKKFIGENFDKSNYSIYQLNDFYGPTVLTRDVEAIVTTESAKE
                     NCVKINELRKSKGMPQLEIILVPLVEDKEGKVISSTRIREGEIDINGNKLTLY"
     gene            complement(3780..4367)
                     /locus_tag="VFX26_04310"
     CDS             complement(3780..4367)
                     /locus_tag="VFX26_04310"
                     /inference="COORDINATES: protein motif:HMM:NF017038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEX5573731.1"
                     /translation="MIHSNQVTLDSMKDVHNQLCSVKRQNIVIPAPQVPQKSAPTAQP
                     SLSTTPSPSQTLNSPPTQQSTAAPASGGQTTISLTGNGTNYSKIEGPIDPEFKSKRQI
                     TGSYQGIKVWGPVDAPGQLGIWGTEVTVDFDICVADGACIEACPVNVYEWLETPGHPA
                     SEKKPFMIREKDCIFCMACENVCPPQCVKIFQKGQ"
     gene            4569..5264
                     /locus_tag="VFX26_04315"
     CDS             4569..5264
                     /locus_tag="VFX26_04315"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX5573732.1"
                     /translation="MSGLGLSYWKEVIGVLRSIIPVYDKVNKSISLGQDDKYREFGLR
                     GQINPGDLILDAGSGFGNMSSKALEILNNNARVILHDPIREMLDYAQNQNSRRLDLSC
                     GVFEYMPFKESSVDAVLCGYSLRDSFSLVEAISEVHRVLKNEGRFIIVDIGKPDNVML
                     RSFVTFYLKYILGIIAYSVSGKRGLRFKTLYGTFVRWPKNALLNDLLLNKFSKVKFTK
                     KMFGGAIIVVAYK"
     gene            5387..5695
                     /locus_tag="VFX26_04320"
     CDS             5387..5695
                     /locus_tag="VFX26_04320"
                     /inference="COORDINATES: protein motif:HMM:NF026297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEX5573733.1"
                     /translation="MNYRSTADIIAMILFTAVNGERKSSIMSRAHLNYRQIKKYIKIL
                     VLNGLVVERSNLSEGSTTYHTTDKGKNYLEMYEESKAYNLTSNTYVFGKQTNHASFPV
                     "
     gene            5986..6324
                     /locus_tag="VFX26_04325"
     CDS             5986..6324
                     /locus_tag="VFX26_04325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573734.1"
                     /translation="MESFSKLDVIAFILKTAHKKCDYEEIYSRLQAHLTTSQMMKFIL
                     ELKKYNLLKSKGNETSYVITPEGRQYLQIHEELTSQVLPEIKRNSLVFNCCNSFSKLT
                     HFFSKRKIAF"
     gene            6410..8530
                     /locus_tag="VFX26_04330"
     CDS             6410..8530
                     /locus_tag="VFX26_04330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase family protein"
                     /protein_id="HEX5573735.1"
                     /translation="MVDRQKIQNIVESSKGNPKVITEESSKEILGEYGIKVPKYALVT
                     NSDEAAQKSKEIGFPLVAKIVSPDILHKTDVGGVKVGLGSENEVKKAFDDMFYRLKEK
                     FDVKGVLLEKMVPEGVELIIGLQNDFQFGPSIMVGLGGIYTELFKDVSFRVLPVTKGD
                     ALKMLESLRGKDILKGFRGSKAIDLDMLSEAIVNIGTLGVDMAGKYESIDFNPVVVYP
                     DSYYVVDAKIILKEKSSDNAISIANPDSSYMDLFFNAKSVALIGASPEPGKIGNSVME
                     SLVKHDYKGKVYPVNAKGYSEIMGVKAYKNLLDVKDPVDVVIVTVDLKFVPDLLTECG
                     KKNIHNMVIISGGGKELGGERADIEKRIQDLSRELNVRIIGPNCIGIFNGENRLDCAF
                     QGHLRMLRPKQGNVAFLSQSGTVGIAFMETSDAFGLSKMISYGNRSDVDEADMIHYLA
                     QDPNTNVIGLYVEGLGDGRKFMNSAKNVIKEHQKPIVVFKNGRSTKGAKQAASHTGSL
                     GGSFAVISGAFEQTGIISVDSYEELTSALKALTWQPVPKGNKIAMVTNGAGPIIAAID
                     NFERLNLELAQLSDQTMKSFKEHYPATYVIGNPCDVTGSASADDYRFAIQSFLDDPNV
                     DIIMPWFVFQDDPLEEKIVDILADFQKQKKKPILIGAMGGPFTEKISKKIEEFNIPVY
                     QSVITWITAAASLAKWHRVKESLK"
     gene            8619..8969
                     /gene="erpA"
                     /locus_tag="VFX26_04335"
     CDS             8619..8969
                     /gene="erpA"
                     /locus_tag="VFX26_04335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HEX5573736.1"
                     /translation="MESTHQTQLITISPKAAEKVMEFMKQENKESLYLRVYVSGGGCS
                     GLSYGMGFEEKPDEDDNVIDQNGIKMIVDSYSQKYLKGTNIDYIESLMGSGFKINNPN
                     VTKSCSCGHSFSTE"
     gene            complement(9031..>10009)
                     /locus_tag="VFX26_04340"
     CDS             complement(9031..>10009)
                     /locus_tag="VFX26_04340"
                     /EC_number="1.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase"
                     /protein_id="HEX5573737.1"
                     /translation="WKCAIANIPYGGGKGGIICDPKSMSEGELERMTRRYAYGISDII
                     GPYKDIPAPDVYTGGKEMSWIMDTFSVIKGNYIQPEVITGKPIQIGGSLGRNEATGRG
                     LAITVREAAKKLNIDMKNASVVVQGFGNAGQFSAQLVEEQGAKIIAASDSKGCIINKN
                     GFDTASLRKHKEKTGSVSNFQGSQTISNKELLETECTILIPAALENQITNDNAGNIRA
                     KIVAEAANGPTTPEADKILFNNKIMVIPDILANGGGVTVSYFEWLQNLRRDYWTEAEV
                     NDRLDTNITKAFLGVYDTHSKHNTDMRKASMIVALNRVVDAIKIRGLWP"
BASE COUNT         3166 a         1726 c         1831 g         3286 t
ORIGIN      
        1 cgatttggac tatattctaa tctaatacac ttatcatctc ggtactccag atctagtcct
       61 ataaatggta gcatttctag aatatattct agatcgtaat cagaaaaaag tctattgata
      121 tcttccagtg gaaattctac aacgggcata ttggttgcat ccttaaccac gatagcttat
      181 tatcgtagag ttcgcgtaca tcatccaatc catatctgat catagcaata cgttcaagcc
      241 caccgcccca ggcaagtaca ttattcaata tacctactga ctgagttacc tcgggtctga
      301 acattcccat gccaaacaat tcgacccact ttccaagttt gtctatgtaa accattgatt
      361 gcaacgacgg ttctgtatat ggaaaatagg tgggccaaaa ctttaccctt tctaatccaa
      421 gttttgaata aaattgtttt tgcagaccca tcaaatctct taaattaact gttttaccta
      481 ttacaattcc ttcgatctga tgaaattcca ttagatgctt gtaagacatt ttttcattcc
      541 taaaaactcg tcctattgaa aaaatccttc cactattcaa cttacttttt gaaagatatt
      601 ttatagtgac tggggtagta tgggtacgga gaacggtttg ctttgatttt tcgatatccc
      661 aatcataact ccattctgtc ttgtgaaagt ttgatacttt attactaata acaggatcta
      721 tttcttcatc atcggtcaaa tttgacaagt agaaggtatc ctgcatatcc cttgcgggat
      781 gatcttgagg agtaaatagc acatcaaaat tccaaaaaca agattggata gttgatcctt
      841 caatttcaga aaatcccatt gacacaaaaa tttctctaat ttcattaatt atatcggtaa
      901 ggggatgcgt tcttcccatg gcgtaagagc ggacagggga agttacatct atttccgtaa
      961 attccttatt cttccatttt ccagtaccta atatttcaga tgtaattgcg cctatccctc
     1021 cctctccgtc gttcttaata tttgatgcta cttttttacc ctcatttgta agggaaatgt
     1081 cgaaagtttt ttctattgtt tctttgagat atcctggacg tttttttagg agagtaaacc
     1141 catgtaattc tttatttgat aattctgaaa gttttatctt atttaatctc gagattttct
     1201 ctaaaagtgt ctcttcgagc gatagatttt ctgaattatc tgtaatcttc agagtatcct
     1261 ccgctttatt cagccaacca tttctaagcg cattttgtat tccaacgcta aattcaatat
     1321 ttgacatact acacagtttg gcaagttccc caatcttgat attttttcga tgtttgtttt
     1381 ttatggcatt aactattctc ctttctggta atgttaaatt ttctgaaaca tgtggtttat
     1441 cacctggacg tccatcattt gacctttctg aaatgagttg aactgttgaa tccttgtgga
     1501 cagacaccga caccattcct ttgtacttta gccattctat cccacgcctt acattatcta
     1561 atgaaaggtt cgtgacagat gacaatttct caatatcggt tttatcgtgt tttacaagtg
     1621 atagcagaat ttttttttct attttatgca aatttagttc cgtcatttaa atatggatca
     1681 gactttgatg gaatactttt taaacgttta aagctctcga atcatgtata tataaaaaaa
     1741 tgagtgactc attcaaagat gattattctg atgattttga agtaacccca tggaaagtag
     1801 agggatcagt agattatgca cgattaataa aaaaattcgg aacgcaggaa ataactgacg
     1861 aaatacttga aaaaattaaa tcatttacag gtgaattaca tccattactt agacaaaaat
     1921 tctttttttc tcacagagat cttgattgga ttttagataa gtatgaaaac aatgaaaaat
     1981 tttatttgta tacaggaagg ggaccatctg ggatggttca ccttggtcac ttgatgccat
     2041 ggtttctcac caagcactta caagacaaat ttgattcaaa tctcttattc caaataactg
     2101 atgatgaaaa attcttgttt ggagacaaaa caatggatga aatcaacaag aatgtatatg
     2161 agaatatcct tgacattatt gcaataggtt tcaaaaagag taaaacaaaa ataattgtca
     2221 attcaagaca cataaaacat ctttattcaa actcgttaga aatagcaaaa aggatcacgt
     2281 tttcaactgc aaagagtatc tttggtttta ctaattcaac caatattgga atgatcggtt
     2341 ttcctcccct tcaaggagtt ccatgttttc tgccttctat aattgaaggg aagcccacac
     2401 ctgttctgat accggcggca attgatcagg atccctattg gagattgaca agagacatcg
     2461 cagaaaaaat tggcttttac aaaccggcac aaatacatag taaatttctg ccaagtttgc
     2521 aaactgtagg caagatgtca tcatcaaatc ctgaaacagc tttattcacc acggatgatc
     2581 cagacataat tgaagaaaaa atatccaatg ccttcacagg aggacagcca acaatttccc
     2641 ttcagaaaaa attgggtgca aatcccgcag tatgttctgt tttttcatac ctcaagtatc
     2701 tgtttgatac gcctggagaa tccaatgaga gggagctaaa atgcaggagt ggcaatcttc
     2761 tttgcggaga gtgtaaacat gatctatcaa atcattcaac ctcattcatt tccatgtttc
     2821 aggaacgaag agaaaaggct aaagattcaa tctctgattt catgtacagt gaggatagtt
     2881 gaatatttgg ataaagttac aagatttgaa tgtcttgact catatgaaac cgaaaaatta
     2941 ggaagtatgt tgttacctga taaaggtagc gtacactttg tgatcgaagt aataaaaatc
     3001 gtggacaatg aaattgtttt aatgttgaag gataaatcat gtcatgccgt tctaatgaag
     3061 gataacataa atgcagtaaa attgagggaa tttgtaagag agttaatatt aggccccgtt
     3121 gttgttatta ggacttttgg tcaggaaaat atattgaatg ttgtacatca aacttcatag
     3181 agtattgatt aattcaacta agtttgattc gaatgtataa aatttatcaa tttggttcta
     3241 atgccaatcc ttactttgaa ataacgtatt gcttattaat agagagtcaa tttgtttccg
     3301 tttatatcta tttcaccctc tcgtatcctt gttgatgata tcaccttacc ttctttatcc
     3361 tcgaccaagg gaactagtat tatttccaat tgtggcatgc cttttgactt tcttaactca
     3421 ttaatcttaa cacagttttc tttggctgac tcagtagtaa cgatggcctc cacatctcta
     3481 gtcaatactg tgggaccata aaaatcattt agttgataaa tagaatagtt agatttatca
     3541 aaattttctc caatgaattt tttcaatttt tcttgtctaa tggaatactt gtttgtaatt
     3601 tttttctttt ttagagttgc ataattgtca ctgcttacac caattattac atgccgtcca
     3661 acttcgaatg cctttagtag aagcatgtag tgccctttat gtaatatatc aaatgtacca
     3721 cctgtagcta cgatgtcaaa cattagtact caaatttgca agttgatatt cgaattaaat
     3781 tactgaccct tttggaatat ttttacacac tgaggaggac aaacattttc acatgccata
     3841 cagaaaatgc aatctttttc tctgatcatg aaaggctttt tctcagatgc aggatgtcca
     3901 ggtgtttcaa gccattcata aacattgaca ggacatgctt caatacaggc gccatcagcc
     3961 acacaaatat cgaaatctac tgtaacttcg gttccccaga ttcccagttg ccctggtgca
     4021 tcaactggac cccatacctt aattccttgg tagcttcccg ttatctggcg ttttgatttg
     4081 aattcgggat ctattggacc ttctatcttg gaatagtttg ttccattacc ggttagagaa
     4141 atcgtagttt gtccaccaga agctggcgct gcggtggatt gttgggttgg cggagagttt
     4201 aaagtttgag atggtgaggg tgttgtcgaa agagaaggtt gagcagttgg tgctgatttc
     4261 tgtggtactt gcggagctgg tatcactata ttttgccttt taacggaaca aagttgattg
     4321 tgaacgtctt tcatactatc aagtgttacc tgattactat gtatcaacag ggtgccacaa
     4381 gattcacata tgtattccat tttagtagac agtattccat aaaaatgagt cccttatcaa
     4441 ttttgtgaac ccatttaatt ctggtggatt gaaatgatca gtaaatgagg gaaatgacag
     4501 tttcatgata agaattgaga ttttttattc caaaataaaa aatatccatt cattttcaga
     4561 cttattaatt gtcaggattg ggacttagct actggaaaga agtcattgga gtattaagga
     4621 gcataatacc agtttacgat aaagttaaca agagtatctc cctaggtcaa gatgataaat
     4681 atcgtgaatt tggactcaga ggccaaatta atcctggtga tttaattcta gatgcaggtt
     4741 cgggttttgg taatatgtcg tcaaaagcat tggagattct aaataataat gccagggtaa
     4801 tactacatga tccgattcgt gaaatgttag attacgctca aaatcaaaat agtcgaagac
     4861 ttgatctctc atgtggagtg tttgaatata tgccttttaa ggagtcgtca gtagatgctg
     4921 ttttgtgtgg gtattctcta cgtgattcct tttcattagt tgaagctatc tctgaagtac
     4981 acagggttct caaaaatgaa ggcagattca taattgtaga tataggtaaa cctgataacg
     5041 taatgcttag aagcttcgtc acattttact taaaatatat cttggggata atagcttact
     5101 ccgtttctgg taaaagaggt ttaagattta agactttgta tggaactttt gtccgatggc
     5161 caaagaacgc tcttttaaat gatctcttac tcaataaatt ttccaaagtc aaatttacaa
     5221 aaaaaatgtt tggcggggca ataattgtcg tggcatacaa gtaatccaca ttagtcgtgc
     5281 aaaattcagt attagattaa ttgagaaaaa gtaaatgtta gctattcaaa aaccagataa
     5341 ttctctaccc tgctatttat agagagattt catttttaaa ttaatattga attataggag
     5401 tactgctgat attattgcaa tgatattgtt cacggccgtc aatggtgaaa ggaaatcatc
     5461 tataatgtcc cgggcacact tgaattatag gcaaatcaag aaatacatta aaattttagt
     5521 acttaatgga ctagtcgtcg agaggagtaa tttatctgaa ggctctacca cttaccatac
     5581 aacggacaag ggaaaaaact atctggaaat gtatgaggaa tcaaaggcat ataatttgac
     5641 atcaaatacg tatgtatttg gaaaacaaac taatcatgct tctttccccg tttgaaatta
     5701 agtgtaccca atcaattttg atagagaatt ggattaattc aatacttttt gaaagatttc
     5761 tgttattatc atttacagta acaacttctt gctgaagtta ttaaaaagaa gtaaattagt
     5821 aactgtattt tacgtatgtt atagaaaata tatcagtatt aatgattaat tcaacatcta
     5881 cttttttctt atgattattc tgataaaatt actggaatat gtaaaaatcc atttactata
     5941 agagttattg acgaggtttt tattttatat attttattat cttttgtgga atcattcagt
     6001 aagctcgatg taatagcttt tatcctaaag actgcgcaca aaaagtgtga ctacgaggag
     6061 atatattcaa gattgcaagc ccatcttaca acttcacaga tgatgaaatt cattttagaa
     6121 ttaaagaaat acaatctttt gaaatccaag gggaatgaaa ctagctatgt cattactcca
     6181 gaaggaaggc aatatttaca aattcatgaa gaattgacca gtcaggtact accagaaatt
     6241 aagaggaatt cactcgtttt taattgttgt aactcctttt ccaagttgac gcattttttt
     6301 tcaaaaagaa aaatagcatt ttgaaaaata tctcacatct tccaaaccct cttgatagtt
     6361 ggttttgagt aaagttaatt aaaaacaaag aaaacctttt ttcataaata tggttgacag
     6421 acaaaagatc caaaatattg ttgaatcttc gaagggcaat ccaaaagtca taacagaaga
     6481 atcctcaaag gaaattcttg gtgaatatgg aatcaaggtt ccaaaatatg cacttgtgac
     6541 aaatagtgat gaagcagcac aaaaatcaaa agaaattggt tttccattgg ttgcaaaaat
     6601 agtttctcca gatattttgc acaagacaga cgtcggtggt gttaaagtag gattaggttc
     6661 tgagaatgaa gttaagaaag catttgatga catgttttat agacttaagg aaaaatttga
     6721 tgtgaaggga gtactattgg aaaagatggt tccagaaggg gttgaattaa ttattgggct
     6781 ccaaaacgat tttcagttcg ggccttctat aatggtaggt ctaggtggca tttacacaga
     6841 attattcaag gatgtttcat tcagagttct tccagtcaca aaaggggatg cattaaaaat
     6901 gttggaatct ctaagaggaa aggatattct gaaaggattt agaggttcaa aggcgattga
     6961 tttggacatg ttaagtgaag caattgtaaa tattgggact ctaggagtgg acatggctgg
     7021 aaaatatgag agcattgatt ttaatccggt ggtggtttat cctgatagtt attacgttgt
     7081 agatgcaaag atcattctta aggaaaaatc ttcagataat gcaatttcaa tagccaaccc
     7141 cgattcaagt tacatggatc tattctttaa tgcaaaatct gtagcattaa ttggtgcatc
     7201 gccagaacct ggcaagatag gaaattctgt catggaaagc cttgtaaaac atgattacaa
     7261 gggcaaagtt tatcccgtaa acgcaaaagg ttattccgaa ataatgggtg taaaagctta
     7321 caaaaacctc ttggatgtaa aagatcccgt agatgttgtt attgtaactg tcgatcttaa
     7381 gttcgtacca gatcttctta ctgaatgtgg aaaaaagaat atccataaca tggtaataat
     7441 atccggcggt ggtaaagaac ttggaggaga acgtgcagat attgagaaac gtatccaaga
     7501 tctatcccgt gaattgaatg ttagaataat tggtccaaac tgcattggta tatttaatgg
     7561 agaaaacaga cttgattgtg catttcaagg tcacttgaga atgttaagac caaagcaggg
     7621 caatgtagcc ttcctatccc agagtgggac ggttggaatt gcgttcatgg agacttctga
     7681 cgcattcggt ctgagcaaga tgatttctta tggtaacagg tcggatgttg atgaagctga
     7741 tatgatacac tatttggcac aggatccgaa tacaaacgta attggcttgt atgtagaagg
     7801 gcttggagac ggtcgcaagt ttatgaattc cgcaaagaac gttataaaag agcatcaaaa
     7861 accaattgta gttttcaaaa atggtcgatc taccaaagga gcaaagcaag cagcctctca
     7921 tacaggttcg ctgggtggat cctttgctgt aataagtgga gcctttgaac aaactggaat
     7981 tatttctgtg gattcttacg aagaattaac ttctgctctt aaggcattaa catggcaacc
     8041 agtcccaaaa ggaaacaaaa ttgccatggt aacaaatgga gcaggaccaa tcattgctgc
     8101 aatagataat tttgaaaggc taaatttgga actagcgcaa ttaagtgatc aaactatgaa
     8161 atcattcaaa gaacattatc cagcgactta tgtaattggc aatccatgtg atgttacagg
     8221 ttctgcaagt gctgatgatt atcgatttgc tattcagtcg ttcttagacg atcctaatgt
     8281 agatatcatc atgccgtggt ttgtgttcca ggatgatcca ctggaagaaa aaatagtcga
     8341 tattctagca gattttcaga aacaaaagaa aaaaccgata ctgataggcg ctatgggagg
     8401 tccatttacc gaaaagatct ctaaaaaaat tgaggagttc aatatacctg tctaccaatc
     8461 tgtaatcaca tggataacag cggctgcaag tctggcaaag tggcataggg tgaaggaaag
     8521 cctaaaataa tttttgtttc aaatacccat ttttgttttt gcccagcttc ctcatttttc
     8581 aaaaggttat tatagtttat tagggcattg tattgataat ggaaagtaca caccaaacgc
     8641 aactgattac aattagtcca aaggctgcag agaaagtaat ggaatttatg aaacaagaga
     8701 ataaggagag tttgtacctg agagtctatg tttccggtgg aggttgttca ggtctctcat
     8761 atggtatggg ttttgaagaa aagccagatg aagatgacaa tgttattgat caaaacggca
     8821 tcaaaatgat tgtcgatagt tacagtcaaa agtacctaaa aggaacgaat attgactaca
     8881 ttgagagtct catgggatct ggtttcaaga taaataatcc taatgtaacc aaatcatgtt
     8941 catgtggaca ttccttttcg actgaataaa aaaatttttt taattacgtc tttttaaaaa
     9001 ttttctttat ctttgtgtta tttgtcggag ttagggccat aatcccctta tctttatggc
     9061 atccacaact ctatttagtg caactatcat acttgccttt ctcatgtctg tattatgttt
     9121 tgaatgcgta tcataaaccc ccaaaaatgc ctttgtgatg tttgtatcca accgatcatt
     9181 gacttccgct tctgtccaat agtctctacg caaattttgt aaccattcaa aatatgagac
     9241 cgtaacccca cctccgttgg ccaatatatc ggggatcacc atgattttat tattaaataa
     9301 aatcttgtca gcttctggag tagttggtcc atttgcagct tccgctacga ttttggccct
     9361 tatatttcca gcgttatcat tagttatttg attttccaaa gcagcaggaa tcaaaattgt
     9421 acattccgtt tcaagaagtt ctttgttgga aatagtttgg ctgccttgaa aatttgatac
     9481 agatccggtc ttttctttgt gtttcctgag tgaagccgta tcgaagccat ttttattaat
     9541 tatacatccc tttgaatcac ttgcggctat tatttttgct ccttgttctt caacgagctg
     9601 agcagaaaac tgtccagcat ttccgaatcc ctgaacaaca acgcttgcat ttttcatgtc
     9661 gatatttagt tttttggcag cttctcttac cgtaatggca agacctctac ccgttgcttc
     9721 gttacgtcca agggatcctc caatttgtat aggtttgccc gtaatcactt caggctgtat
     9781 gtaatttccc ttgattaccg agaacgtgtc cataatccaa gacatctctt ttccacctgt
     9841 gtatacatca ggtgcaggaa tatccttgta cggtccaata atatctgaaa ttccatatgc
     9901 ataccttcta gtcattcttt ctaattctcc ttctgacata ctttttggat cgcatattat
     9961 accacctttc cccccaccat atgggatatt tgcaatggcg cacttccat
//
LOCUS       DASUMD010000151        11172 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1042803, whole genome shotgun sequence.
ACCESSION   DASUMD010000151 DASUMD010000000
VERSION     DASUMD010000151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 11172)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11172)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11172
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1042803"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..788)
                     /locus_tag="VFX26_04345"
     CDS             complement(<1..788)
                     /locus_tag="VFX26_04345"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEX5573738.1"
                     /translation="MEKGSLILIDYTAKVKDSDEIFETTVEENAKKSNLYDPSIKYEP
                     RLVSIGEGWVLKGLDEILTTANLGDNLNVDITPEKAFGMRDPNKVRMIPQRKFGDKAD
                     EIKAGDVVDIDDRRGFVRFIGSGRVQVDFNHRFAGKTLNYNVNILKVLKTDEEKASSL
                     VKRRLLVEGDKISITFNKPELVISLPEEAFLIDGLQIIKKAISGDLFKFIPSVESIKF
                     LEIYNKAKPESKAKDEPKAKDEPKAKDEPKAKDEPKAKDEPKAK"
     gene            complement(842..1981)
                     /locus_tag="VFX26_04350"
     CDS             complement(842..1981)
                     /locus_tag="VFX26_04350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--glyoxylate aminotransferase family
                     protein"
                     /protein_id="HEX5573739.1"
                     /translation="MEYLVMLPGPTNVPNRVINAMLTPMINHRSDDFRKLYKDIVNKT
                     QRVFETENDIVVLTTSGTGAVETSVVNLIKKDDLVIIPVNGEFSTRLADLIDNYGGKT
                     IRINSPYGQNPPIEKVEEAFEKNSNIKALYVVYNETSTGTTLRNLSKLGDICKAHGAY
                     FVVDAVSILGGDELPVDKWNVDICFTATQKALAAPPGIAPISISKEAKKYMIENPPPS
                     QYLNLKRYFKYYNDSFETPFTPAISLFYAYQEALNIIIEEGMENRIHRHRKCANAFYS
                     GLEALGFTPFADADSRSNVVIAVNYLPGIDDKKFRELISTKFKVLIAGGFGELKGKVF
                     RVGCMGEVSSYHVMRTLSAISSSMSILGVLPIKDGLSVANNVLSQ"
     gene            2069..3151
                     /locus_tag="VFX26_04355"
     CDS             2069..3151
                     /locus_tag="VFX26_04355"
                     /inference="COORDINATES: protein motif:HMM:NF012766.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HEX5573740.1"
                     /translation="MLKERARNILDTIAATGFNALMVFKPENIFYLTGFWGESIAICT
                     HDKIKLFVPKLESTRALNESKYSEIINAERGTGLIKSVIPYLSKHKFYSDCSDYETVQ
                     SILPYTDNSKFIIDEWPYRKARIVKDDSELGKIKEASRIIDKLYEMCNDEIKRGLTEK
                     QLQAKLLYEAMNFGGTSTCYPYTLNPFIIAGGPNSALPHFETSNREFIDGDFIVVDLT
                     LRYNGYISDATRTFALNNVSHEMREVYNLVKKSQQQGLECVEEGVECGKVDVACRNLI
                     SNRGYGDNFIHSTGHGVGLEVHEQPWIRQNESKKLSKGMVVTVEPGIYIDSKFGVRIE
                     DTIVVNENTNVNDLTLTKFTKELLIL"
     gene            complement(3167..4462)
                     /gene="coaBC"
                     /locus_tag="VFX26_04360"
     CDS             complement(3167..4462)
                     /gene="coaBC"
                     /locus_tag="VFX26_04360"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004632 - phosphopantothenate--cysteine
                     ligase activity [Evidence IEA];
                     GO_function: GO:0004633 - phosphopantothenoylcysteine
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0015939 - pantothenate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HEX5573741.1"
                     /translation="MNISNENSQNREHISKEIIGIHSNILKGKKIVLCITASVAAYKA
                     IDLSRMLMRNGAEVYPVMSKSTKSRLLTEEIMNWATGNKTVSELTSDLEHIALANYGK
                     SDIVVVYPCTANTLGKFANGIEDNPVTTVLSVAFGSRIPIVIAPAMHEAMYENIIISE
                     NIKKLKSLGVSILEPSITEDKAKVISAEKVVQFVIDKIGMKKGKMTSGINVLVTAGST
                     VEYIDSVRILTNLSSGKMGLNIAQQCLDKCFNVTFVYGHGSLNIPDDPRMNIIRIKTT
                     EEMLKVVKERILNEKQHIVFHVAAVADFSILHSSKKRPNKMDTRNGTKTIKLVPTTKI
                     VDKIKQFDNKIFLVAFKTEYGISKELLVKRALVKLNECNGDLIVANDVSRKGCDFGSD
                     TNEVYILDKEKDMIHVPLESKKEIARKLLKIVCKKLKLH"
     gene            complement(4464..5324)
                     /gene="panB"
                     /locus_tag="VFX26_04365"
     CDS             complement(4464..5324)
                     /gene="panB"
                     /locus_tag="VFX26_04365"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003864 - 3-methyl-2-oxobutanoate
                     hydroxymethyltransferase activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HEX5573742.1"
                     /translation="MGSQKKSKLTISEILDKKKNKEKITMLTSYDYSISRICNETDLD
                     LVLIGDSAATVMLGYDSTRKIGMNEMLTFCKGVVNAITRPIIVADMPFGSYQMGTSIS
                     IRNALKFLRCGCDAVKLEGGLEVVDIVKKLTSLGIPVMGHIGLKPQTTPLHHGYISQG
                     KTAEDAIKLINEAEALEEAGVFSIVLEKVTSEVASVITQNVNVPTIGIGCGPYVDGQV
                     LVIHDMLGLYKEIEPKFVKRYLNLSDQIFDAIKTYENEVKSGKFPQEEHMYHMTEEEF
                     ARLEKILKRA"
     gene            complement(5326..6072)
                     /locus_tag="VFX26_04370"
     CDS             complement(5326..6072)
                     /locus_tag="VFX26_04370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopantothenate/pantothenate synthetase"
                     /protein_id="HEX5573743.1"
                     /translation="MIHEIPPTHPRAKSLIIREKLVEGFRKGIVVPQGLIAHGRGETF
                     DYLLGERTTKYAYDAEKAAVCLLLLSNKSIISINGNTAALCARDLVILSNLTKSGIEV
                     NLFHKNKDRSNAIAKMLRKEDATDVLGLNAKLKSVINGISSNRKYVDKNGIMKSDTIF
                     VALEDGDRTESLVKMGKKVISVDLNPISRTAMASDVTIVDNIIRAIPNMLKISEQLVK
                     KDKSYLLQQIKNFDNKENMHKSLLLIRRGI"
     gene            complement(6062..6988)
                     /locus_tag="VFX26_04375"
     CDS             complement(6062..6988)
                     /locus_tag="VFX26_04375"
                     /inference="COORDINATES: protein motif:HMM:NF012509.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573744.1"
                     /translation="MTLEITPAISIGKAFSPSHITGFYSEIKDKSILKRGSLGAGISV
                     GKGVTSTVELYRSEKNNFTISINGAISKDALVSKFVINEFLKRASKNYFVKVNHEVGL
                     PIGYGIGTSGSAALSLSYALNHALSLGLSDMESAQIAHRAEIECRTGLGTVLSEYYGG
                     LCIRLKGGAPGIGKTSVIKINNSKVAIFCFSPIFTRYFIESIGGLSNQECKQMMTKTL
                     KTKSIIDFLELSYDFSQSLRFVNKSCNNLMDLLLQNGFHSSAALFGQTVFTIVKENEL
                     EELRKVSKNFSTRLFISDIENEGARLIRKYDT"
     gene            7061..8056
                     /locus_tag="VFX26_04380"
     CDS             7061..8056
                     /locus_tag="VFX26_04380"
                     /inference="COORDINATES: protein motif:HMM:NF014010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate uptake regulator PhoU"
                     /protein_id="HEX5573745.1"
                     /translation="MFQDERRLQKIGSSILMSLPAEWIKTLGLKKGDILSIENNDDNS
                     ITIFPTSDRNSQSKEIAIHLLDLSHEKLINQIYGAYLLGYDIIKIVGRTQIDFENREI
                     IKKAMRNLIGLEIVDEDGLNMTIQFLLDAHSMNISKILKQMSSIVSGMHKDIVNAMKT
                     RDSEIDLLVRGRDDEVNRQYFLIVRLIRTAMMDRRLASSLDLSNIDILDYRIAANHLE
                     NAGDFISRLSSQLSGFFDEIKYEKIIEANYLILEMQEKSISGFITKDTEKSSHVVTLF
                     NKFNAISTFIKNDYIKLEGNYQSALKIINIIYTMDEVARCWVDITDLIKPVYSIR"
     gene            complement(8105..8263)
                     /locus_tag="VFX26_04385"
     CDS             complement(8105..8263)
                     /locus_tag="VFX26_04385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573746.1"
                     /translation="MSVLEHEWVTILEEENAHDIEELGIAVGISSYNTVKIVPLRHLD
                     DVIKKIES"
     gene            complement(8506..9153)
                     /locus_tag="VFX26_04390"
     CDS             complement(8506..9153)
                     /locus_tag="VFX26_04390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4443 domain-containing protein"
                     /protein_id="HEX5573747.1"
                     /translation="MHTYVRTLQKVASRIAPSRILSFEMVHVLKTLQLIQEKGHVSRH
                     TLCKNLDLGGGTVKTLVKHLKIYDLVVTDKSGTRISRKGSKLLSELVLSMPAEMSIST
                     CSVALGKFNYGILLRQMSYVIKTGIEQRDAAIKMNALGATTLVYKDKKFIMPNTNFDA
                     LHTEQNLHALLVQSLNPEEDDVLIIGSDNKSERTAEFAAKSAALITIMNHDKHIF"
     gene            9269..9484
                     /locus_tag="VFX26_04395"
     CDS             9269..9484
                     /locus_tag="VFX26_04395"
                     /inference="COORDINATES: protein motif:HMM:NF021038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CbtB domain-containing protein"
                     /protein_id="HEX5573748.1"
                     /translation="MSYTRQLLVERSDVSKVAIGVLVAIMLFGLFASGFDQGHLFSLV
                     EGKEAFDNKWLHEFVHDMRHASGFPCH"
     gene            9519..10238
                     /locus_tag="VFX26_04400"
     CDS             9519..10238
                     /locus_tag="VFX26_04400"
                     /inference="COORDINATES: protein motif:HMM:NF021039.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CbtA family protein"
                     /protein_id="HEX5573749.1"
                     /translation="MPFLLVTVVSGAIAGTILGLINLGVVEPSIDKAIELEIKNDIQG
                     GQTVNMNEITDYRTWQKGGEIVGGLVYGISLSSLFGIVFAYSRKSLPGNNAKLKAIFL
                     ASIMCLVLFIVPALKYPSNPPAVGDPNTIYYRQSLFVAFLVISGLSALGVAVLAKKLN
                     QTVPKKMVIACATYGAIMIVSYIVMPSNPDKISISMNLIETFRLVSAGTIVMFWGVLG
                     LIFGTLWHRFDPHNFEKITAF"
     gene            10795..11094
                     /locus_tag="VFX26_04405"
     CDS             10795..11094
                     /locus_tag="VFX26_04405"
                     /inference="COORDINATES: protein motif:HMM:NF014047.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAM domain-containing protein"
                     /protein_id="HEX5573750.1"
                     /translation="MDTVDGSSTDGHKNIQEHNSHFSTKRSMYDSSFQYPVRLGDEYN
                     VNIQDMSRNGDSGVTRIRGLITFVRGTKPDDKVRIKIIKIGKGYARGQLIAYLDS"
BASE COUNT         3394 a         2044 c         1858 g         3876 t
ORIGIN      
        1 tcctttgcct ttggttcatc ctttgccttt ggttcatcct ttgcctttgg ttcatccttt
       61 gcctttggtt catcctttgc ctttggttca tcctttgcct tcgattccgg tttagcttta
      121 ttgtaaatct ctaaaaattt tatgctttct acagatggaa tgaatttaaa taaatcacca
      181 gatattgcct tcttaataat ctggagtcca tcaatcaaaa aagcttcttc aggcaaagaa
      241 atgacaagtt caggtttgtt aaaagttata gaaatcttgt cgccttctac aagaagtctc
      301 ctcttgacaa gagatgatgc tttctcttca tcggttttta agacctttag aatattgaca
      361 ttgtaattca gtgtttttcc ggcaaatcta tggttaaagt caacctgaac gcgccctgag
      421 ccgataaacc ttacaaaccc tcttctatcg tctatgtcaa ctacatctcc ggcctttatt
      481 tcatcggcct tatcaccaaa ttttctttgt ggtatcatcc ttaccttatt cggatctctc
      541 atgccaaatg ccttctccgg agtgatatca acattcaaat tgtcaccgag gtttgcagtc
      601 gttagaattt cgtcgagtcc tttcaatacc catccttctc ctatcgagac taatctaggt
      661 tcatacttta tactaggatc atagagatta gatttcttcg cattttcttc cacagtagtc
      721 tcaaaaattt cgtctgaatc ctttacttta gcagtatagt ctataagaat gagtgatcct
      781 ttttccattg tcacgaaatt tgctgtcgat ttaccataat attaagctta acaactagtc
      841 cctattgact cagtacattg ttggctactg acaatccatc ctttataggc agcacgccca
      901 gaattgacat tgatgatgag atagcagaaa gagttctcat aacatggtaa ctacttactt
      961 cccccataca tcctactcta aaaacttttc ccttaagttc cccaaatccc cccgctatta
     1021 agaccttgaa tttagttgaa atcagttctc gaaatttctt gtcatcaata ccgggaagat
     1081 aatttacggc tataaccaca ttgcttctgg aatcagcatc tgcgaatggt gtaaaaccca
     1141 aggcttctag tccggaatag aaggcattag cgcactttct atgtcgatga attctatttt
     1201 ccattccctc ttcgataatg atatttaatg cttcctggta agcataaaaa agacttatag
     1261 caggtgtgaa aggggtttca aaactgtcgt tataatactt gaaatatctt tttagattca
     1321 aatattgact tggaggggga ttctcaatca tgtatttttt tgcttccttg cttattgaaa
     1381 tcggtgcgat tcctggaggt gctgctagtg ctttctgagt tgcagtaaag catatatcta
     1441 cattccattt gtcaactggt agctcatcac cacccagaat tgagactgcg tctacgacaa
     1501 aatatgctcc atgagcctta cagatatcgc ctaatttgga taaatttctc aaagtcgtac
     1561 ctgtagaagt ctcattataa acaacgtata gtgccttaat attagaattt ttttcaaaag
     1621 cctcttctac tttttctatt ggtgggtttt gtccataagg tgaatttatc ctaatagtct
     1681 ttcctccata gttatctata agatctgcaa gtctagtact aaattctcca tttacaggta
     1741 taatcactaa gtcatctttt tttataagat ttacaacaga ggtttcgaca gcccctgtgc
     1801 ctgaagttgt gagtactaca atatcatttt cggtttcaaa taccctttgt gtcttattta
     1861 ctatatcttt gtataatttt ctaaaatcat cacttctatg gtttatcatg ggtgttagca
     1921 ttgcattaat aactctatta ggaacattag ttgggcctgg aagcattaca aggtattcca
     1981 attacattca agaaaagatt agagccaata tttataatta cgtaaaaatt tggaaagaga
     2041 cataaatgat tttattttgc attaacttat gcttaaagaa cgtgctagaa atatacttga
     2101 tactatagct gccaccggat ttaacgcatt gatggttttc aaaccagaaa atattttcta
     2161 tctgacaggt ttttggggcg aatccattgc gatatgcacc catgataaga ttaaattatt
     2221 tgttccaaag ttagaaagca ccagggcttt gaatgaatcc aaatactctg aaattatcaa
     2281 tgccgaacgt gggactggac tgataaagtc agtaattccc tatttatcaa aacacaaatt
     2341 ctattctgac tgcagtgatt atgaaacagt tcaatctatt ttaccatata cagataacag
     2401 taaattcatc atagatgaat ggccatatcg taaagcaaga attgtcaaag atgattctga
     2461 acttgggaaa atcaaggagg catcacgtat tatagacaaa ctctatgaaa tgtgcaatga
     2521 cgaaataaag agagggctta cggaaaagca attgcaggca aagttactat acgaagccat
     2581 gaactttgga ggaacatcta catgttaccc atatactttg aatccattca taattgctgg
     2641 tggacctaac agcgctctac cccatttcga aacatcaaat agagaattta ttgatgggga
     2701 tttcattgtc gttgatttaa ctctgcgata taatgggtat atttccgacg ctactcgtac
     2761 atttgcatta aacaatgtaa gtcatgagat gcgtgaggtg tataaccttg ttaagaaatc
     2821 tcaacagcag ggactcgagt gtgtagagga aggggttgaa tgtgggaaag tagatgttgc
     2881 ttgccgcaat ctgatatcaa atagaggata tggtgacaat tttattcatt ctacaggaca
     2941 tggggttggc ttggaggttc atgaacaacc atggatacgt caaaatgaat ctaaaaaatt
     3001 atcaaaaggc atggttgtta ctgttgaacc tgggatctac atagattcaa agtttggtgt
     3061 taggattgag gatacgattg tagttaatga aaataccaac gttaacgatt tgactctaac
     3121 taaatttacc aaagagttac taatcttatg atcacaaaat aatcaatcaa tgtaacttta
     3181 gctttttgca aacaatcttt aataactttc tagcaatttc cttctttgat tcaagtggga
     3241 catggatcat atccttttct ttatctaata tgtagacctc atttgtatca gatccaaaat
     3301 cgcatccttt tcttgagaca tcattagcta cgattagatc accattacac tcattaagtt
     3361 taacaagagc tctcttgact aacaattcct ttgaaattcc atattccgtt ttgaacgcca
     3421 ccagaaagat tttattatca aattgtttta ttttatcgac aatttttgta gttggaacaa
     3481 gtttaatggt tttagttcca tttcgagtat ccattttgtt gggccttttc ttgctggaat
     3541 gtaatatcga aaaatctgca acggcggcga catgaaaaac aatatgctgt ttttcattca
     3601 aaatcctttc cttcacaacc tttaacattt cctcagtagt cttgattctt ataatgttca
     3661 ttcttggatc atctggaata ttcaaagatc catgtccata aacgaatgtt acgttgaagc
     3721 atttatccaa acattgttgt gctatattta gtcccatttt tcctgaactt aaattggtca
     3781 aaattctgac tgaatcaata tattcaactg tagaacccgc tgttaccaag acattaattc
     3841 cagacgtcat tttgcctttt ttcattccga ttttatcaat tacaaattgt actacctttt
     3901 cggcagaaat tacttttgct ttatcctctg ttatagatgg ttctagtatt gatactccta
     3961 atgactttag tttcttgata ttttccgata taatgatatt ttcatacatg gcctcatgca
     4021 ttgcgggagc aattacaatg ggtattcttg atccaaaggc tacactcaga acagttgtta
     4081 ctggattatc ttctattccg ttagcaaatt ttcccaaagt gttagctgtg caaggatata
     4141 caacgacaat atctgattta ccgtaattgg caagagcgat atgttccaaa tctgatgtta
     4201 gttctgatac agttttgttt cccgtggccc aattcattat ttcctctgtt agtaacctgg
     4261 atttagttga ttttgacatc accggatata cctctgcacc attgcgcatc aacattctac
     4321 taagatctat agctttgtat gcagctacac tagcagtaat gcacaacaca attttctttc
     4381 ctttcagaat attgctatga atacctataa tttcttttga tatatgttcc ctattttgag
     4441 aattctcatt tgaaatattc atatcaagcc ctttttagga ttttttctag tcttgcaaat
     4501 tcttcttccg tcatatgata catatgttct tcctgtggga actttcctga tttaacttca
     4561 ttctcgtatg tttttatcgc atcaaatatt tgatctgaca aattgaggta tctttttaca
     4621 aatttaggtt ctatttcttt gtacaatcct aacatatcat ggataaccaa tacttgtcca
     4681 tcaacgtaag gtccacaacc tatcccaatt gttggaacat tcacattttg agttatcact
     4741 gacgctactt cgctggtaac tttttcaaga acgatgctaa aaactcccgc ttcttctaga
     4801 gcctccgctt cgtttattag tttgattgca tcttcggctg ttttcccctg tgaaatatag
     4861 ccatgatgta gtggagtagt ctgaggtttt aatcctatgt gtcccattac aggaatacct
     4921 aggctggtca attttttgac aatatcaaca acttccaatc cgccctctaa cttgacggca
     4981 tcgcaaccac atcttaagaa tttaagagca tttctaattg aaattgacgt tcccatttga
     5041 taggatccaa aaggcatgtc agcgactatt attggtcttg ttattgcatt tactactcct
     5101 ttgcaaaatg tcaacatttc gttcatccct atttttctag tcgaatcata tcccagcatg
     5161 acagttgctg cactatcacc tatcaagacc agatccaaat cagtctcatt acaaatacga
     5221 gatatggaat aatcgtacga cgttaacatt gttatttttt ctttgttttt tttcttatcc
     5281 agaatttcag aaattgttag ctttgatttt ttttgacttc ccatttcaaa ttcctcttct
     5341 tattaatagt aacgatttgt gcatattttc tttgttatca aaattcttaa tctgttgcaa
     5401 taagtacgat ttatctttct taactaattg ctctgagatc tttaacatat ttggtatcgc
     5461 acgtataata ttgtcaacaa tagtaacatc agaagccatt gcagtacgtg aaatcggatt
     5521 tagatctaca gaaattacct tcttgcccat tttgactaga ctttctgttc tatcaccatc
     5581 ttcaagagca acaaaaatag tatcagactt cattatccca ttcttatcaa catatttgcg
     5641 attacttgat ataccattaa taacagattt tagtttggcg ttcaatccca atacatcagt
     5701 tgcgtcttct tttcttaaca tttttgcaat tgcattggat ctatccttat tcttatgaaa
     5761 aaggtttacc tcaattcctg atttagtaag attactcaat ataactagat ctctcgcaca
     5821 taacgcagct gtgttaccat tgatagaaat aattgactta tttgatagca ataataaaca
     5881 gacagctgct ttctcagcgt cgtatgcata ttttgtggtc ctttcgccca gtaaataatc
     5941 aaaggtctct cctctaccat gggcaatcaa tccttgtgga acaacaattc ccttcctaaa
     6001 gccctcaacc aatttttctc gtatgatgag cgattttgct cttggatgag tcggtggaat
     6061 ttcatgtatc atattttcta attaatctag caccttcatt ttcaatatca gaaataaata
     6121 accttgtaga gaaatttttt gaaacctttc ttaattcttc tagctcattt tctttcacga
     6181 ttgtgaaaac ggtctgtcca aatagcgccg cactactatg aaagccattt tgtaataaga
     6241 ggtccatcaa gttattgcag cttttattta cgaatcgcaa tgattgtgaa aagtcgtaag
     6301 atagttctag gaaatctata atacttttcg ttttgagtgt ctttgtcatc atttgtttac
     6361 attcttggtt tgaaagtcct ccaatacttt cgataaaata ccgggtaaaa ataggagaaa
     6421 aacagaaaat ggcaactttg gaattattta tttttattac acttgttttt ccgatacccg
     6481 gggcaccacc ctttaatcta atacataatc ctccataata ctctgagagc actgttccta
     6541 aaccagtcct acactctatt tcagctctat gagctatctg agctgattcc atatctgaaa
     6601 gacccaaaga aagagcatga ttgagtgcat acgatagact cagtgctgca gacccactcg
     6661 taccaattcc atagccaatg ggtaatccaa cttcatgatt tactttaacg aagtaattct
     6721 tacttgctct tttcaggaat tcatttatta cgaattttga aactaatgca tctttggaaa
     6781 tagcaccatt gatactaatt gtaaaattat ttttctcact acgataaagt tctactgtgc
     6841 tcgtaactcc cttgccaacg gaaatccctg cccccagaga accacgtttc aagattgatt
     6901 tatctttgat ttcgctataa aatcctgtta tatgactcgg actaaatgcc tttccgatag
     6961 aaatcgcagg agttatttct agagtcattt gcatcataat ataatatttt gaaaaatata
     7021 agaataatgt ttaattaatt tatatgcatt taaatatagt atgtttcagg acgaacgacg
     7081 cttgcaaaaa attggaagca gcatacttat gtcattacca gctgaatgga taaagacgct
     7141 tggtttaaaa aagggagata tattatctat tgaaaataac gatgacaact ctattactat
     7201 atttccaacc agcgatagaa atagtcagtc caaagaaata gcaattcatc tccttgatct
     7261 ttcacatgaa aaattgatta atcagattta tggagcatat ctgttagggt atgacatcat
     7321 aaagattgtt ggaagaactc aaatcgattt tgaaaatcga gaaataataa aaaaggcaat
     7381 gagaaatttg attgggcttg aaattgttga tgaggatggc ctaaatatga ctattcagtt
     7441 tctgctcgat gcacactcca tgaatatctc taaaatatta aagcagatga gctccatcgt
     7501 gagcggtatg cataaggata tagttaacgc catgaaaaca agagatagtg aaatcgatct
     7561 tcttgtaagg ggaagagatg atgaagtaaa taggcaatat ttcctaattg tacgattgat
     7621 tagaaccgca atgatggatc gcagattagc ttctagtctg gatcttagta atatcgatat
     7681 tttggattat agaattgcag caaatcattt agaaaatgca ggggatttta tttctagatt
     7741 atcttcccaa ttatcaggtt tttttgatga aataaaatat gaaaaaatca ttgaggcaaa
     7801 ttatttgatt ttggaaatgc aagaaaagtc catatctgga ttcatcacta aggatactga
     7861 aaagtcttct catgtagtaa ctctcttcaa taagttcaat gcaatatcta ccttcattaa
     7921 gaatgattat atcaagctag aaggaaatta tcaatctgcg ctaaagatca taaatataat
     7981 atacacaatg gatgaggtag ctagatgctg ggttgatatc accgatttaa taaaaccagt
     8041 ctattctatt aggtagaaag agttttgtgg ggattcattt gcgacatgaa tgtttgattc
     8101 gagattaact ttctatcttt ttgattacat catccaagtg tctcaacggc acaattttta
     8161 cagtattgta tgaagaaatt cctaccgcaa tacctagctc ttcgatatcg tgtgcatttt
     8221 cttcttccaa aatagtaacc cattcatgtt caagaactga catgtaaaaa gtaacaacct
     8281 tttcagatta aatcttgaaa tatttgattc aattttcttc ttaatttctt taaaaatttt
     8341 tttactttct tcattattta gcggacatga ttatggacta cgtaccgcaa atactccaaa
     8401 cagtgaatta ttgttcgatt ccatctggtc ttttatcaat agtggacact taaaatgagt
     8461 tatcaagggt tcaaaagaat taaccttaga gtcggtcgga caattttaga aaatgtgttt
     8521 atcatgattc atgatagtta tgagtgccgc actttttgca gcaaattctg cagtcctttc
     8581 ggatttgttg tcactgccaa ttattagcac atcatcttct tctggattca agctctgtac
     8641 taataaggca tgtagatttt gttctgtgtg aagtgcatca aaattggtat ttggcattat
     8701 gaatttcttg tctttgtaaa ccagtgtggt ggcaccaagt gcgttcattt ttattgctgc
     8761 atctctttgc tctattcctg tcttgattac gtagctcatt tgtctgagca aaattccata
     8821 attaaatttg cctaatgcaa cggagcatgt agaaatactc atttctgctg gcattgataa
     8881 aaccagttct gaaagcaatt tacttccctt tctgcttatt cttgttccgc tcttatcagt
     8941 tacaacaaga tcgtagattt ttaggtgttt gacaagtgtt tttactgtac cccctccaag
     9001 atctagattt ttacatagag tatgcctact aacatgccct ttttcttgaa ttagctgcaa
     9061 tgtctttaat acatgcacca tctcaaatga gagaattcgg cttggtgcga ttctacttgc
     9121 taccttttgc agtgtcctaa cataagtatg cattacattt acgatagtac aacaaatagt
     9181 gtaatttata caattataga attcattatt ggctagttgg ataaaccaac caattattta
     9241 tatatattaa taatattaat gaatgagaat gtcatacacg agacaattat tagtagaacg
     9301 atcagatgtt tccaaagtag caataggagt tttggttgca attatgctat ttggattatt
     9361 tgcgtcaggt tttgatcaag gtcatctttt tagtctggtt gaagggaaag aggcctttga
     9421 taacaaatgg ttacatgaat tcgtgcatga tatgagacat gcctccggat ttccatgcca
     9481 ctgaaaacgt attggataat gaataaatca tgcgaacttt gccatttctt ctcgttactg
     9541 tcgtttccgg ggccatagca ggaacaattc ttgggctaat taacctaggc gtagtcgaac
     9601 catctattga taaagcaata gagttagaaa taaaaaacga tattcaaggg ggacaaaccg
     9661 tgaatatgaa tgaaattact gattatagaa cttggcagaa aggtggggaa atcgtgggag
     9721 gattggttta tggaatttct ttatcttcgt tattcgggat agtgtttgct tactcaagaa
     9781 aatcgttacc aggtaacaat gccaagttaa aagcaatatt tctagcatcg ataatgtgcc
     9841 ttgtgctttt tattgtccct gcattaaaat acccttcaaa tccgcctgct gttggagacc
     9901 caaacacgat ctattatcgt cagagtttgt ttgtagcatt tcttgtcatc tctggactta
     9961 gcgcactagg cgtagcagtt ctcgcgaaga aacttaatca aacagttccc aagaaaatgg
    10021 ttattgcctg cgccacttat ggagctatca tgattgtatc ctacattgtc atgccttcaa
    10081 atccagacaa aatctctata tcaatgaatc tgattgaaac tttcaggctt gtgagtgcgg
    10141 gaacgattgt catgttctgg ggagttcttg ggttaatctt tggaactctt tggcatcgct
    10201 ttgaccctca caattttgaa aagattactg ccttctaacc tctgttttta ttgccggtaa
    10261 aaataatatc accgatactt ctcaagattt tgggttttca tttgatattt gatatttaag
    10321 atttaagatt taatgaacca atagcttttg gattggaata tgctatgtat ttgaatttac
    10381 ttgattgatt ccttaatact gcgtatattc ttaactagta aagacatatg acattgtagt
    10441 ttcctgtaat gacacttggt ctccggtttg ccatagtaga atatttatat tcattgtaat
    10501 actaatattt tcataccccg aaaaactgtc tacggtaaat gtccaaaatg taggactaaa
    10561 agtcaacttg aggtactatc gagtaatccc ggaaatgaga aatttaggtg caatatgtgt
    10621 tataacaaat ttacaatgga cgaactctaa gaagttgtat ccagccaata gcgattcttt
    10681 ttttctttta ttaattctga agaataaaaa ttcaacatat tcgagcttaa taatgattgt
    10741 gaaaatacaa catttttaat attgaaatag gtgtacgtgt aaatcaattt aagtttggat
    10801 accgtcgatg gatcttcaac tgatggacat aagaacattc aggagcataa tagtcatttc
    10861 tctacaaaaa gatccatgta tgattcatcc ttccagtatc ctgtaagatt aggtgatgaa
    10921 tataatgtga atatccaaga tatgagtagg aatggagatt caggcgttac aaggataaga
    10981 ggattgatta ctttcgtgag agggactaaa cctgacgata aagtaagaat taaaattata
    11041 aagattggaa agggttatgc cagaggacaa ttaattgcat atttggattc ttgaattagt
    11101 ctaataacaa agaaatgaac attttactgt acacgagtat caatctaatg tcctcaattg
    11161 tcacttcaat gc
//
LOCUS       DASUMD010000152         3468 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_47208, whole genome shotgun sequence.
ACCESSION   DASUMD010000152 DASUMD010000000
VERSION     DASUMD010000152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3468)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3468)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3468
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_47208"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1592)
                     /locus_tag="VFX26_04410"
     CDS             complement(<1..1592)
                     /locus_tag="VFX26_04410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEX5573751.1"
                     /translation="MTNYIGQKSFSLFYNNIARWFFLFLFFAGMFSCYVFGIQLALNY
                     AIHYKFDFFYFGFTLLSGLGTIWGVMAHREFTKSSYRVNNTRILACQINPKIGKYEYK
                     SYNPETHEFEDGYIPFGPIDFWDPATYAPEWVDKGKYWHVLLGLQVPNKELILQVVKD
                     DDLLNTRNRNVATTEKEIIRFPWSTNGSIKRVRYRVKIPQWAVMRADYQGTKSNNPER
                     IVTNREIGKLNRNIVLLVDEIIEREKFRIKYPWKITGLWIYIYKSLPIKIIYNEILEK
                     LPGFHKSIVKEANDTLADIREDRLVLAILDVAKNKGIRQDKIEKISTLIRFLDGVYSD
                     IGLGEGSTEYHNFHHSLEVSYMTLKMLPNRINNFRFSVDDIEILLVAALLHDYDPLQF
                     TYNGNSSKPENNGYPKQEQGSTIRPSVGPRVHRTIEIIQRYQIHDAYFKLDQPDLERV
                     FENFSFKFSTQPDVQTQTAHIEKSDRSLFVEALIWRTDFPYFKQETAQKNYKELLSEI
                     NVKGHDIGKINILAEVLWLSDLS"
     gene            complement(1835..2206)
                     /locus_tag="VFX26_04415"
     CDS             complement(1835..2206)
                     /locus_tag="VFX26_04415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family ribbon-helix-helix protein"
                     /protein_id="HEX5573752.1"
                     /translation="MSVSLNEDIIESLDKLKSLGFSGRSEIIRAGIRNLLSDERMKED
                     LDGEINSLLLAVHDEDSDDQVSSIRHDFDKIIIVHLHNKIDKDRCLEIFSLKGDAKDV
                     KEISRQLQVNKRMHFVKLIVV"
     gene            2804..>3468
                     /locus_tag="VFX26_04420"
     CDS             2804..>3468
                     /locus_tag="VFX26_04420"
                     /inference="COORDINATES: protein motif:HMM:NF013465.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter substrate-binding protein"
                     /protein_id="HEX5573753.1"
                     /translation="MNAPNGTQEGPMYVLENITNSSHKLTVISSFFPIDEFVEKVGGD
                     NVESSLVIPAGIEPHDFEPTIAQIQNIDSADALVYNGLGIENWITKISPTHKIDASKG
                     LNVSYSDNRNMTLDPHVWLDPLLAKKQVENIRDGLMIIDPKNRQTYISNAKTFLDEID
                     TLDKTIRAELESCKKRDFISSHNSFSYFAKRYGLTQHSIFNTGLEAEATPARLAEIIN
                     LAK"
BASE COUNT         1108 a          624 c          570 g         1166 t
ORIGIN      
        1 gatagatcag atagccacaa cacttctgcc aagatgttta tctttccaat atcatgacct
       61 ttcacattaa tttcagaaag caactctttg tagtttttct gagccgtttc ttgtttaaaa
      121 tatggaaagt cagttctcca aatcaatgct tcaacaaaca aactcctgtc ggatttctca
      181 atatgtgctg tttgtgtctg cacgtctggc tgagtactaa atttaaatga aaaattttcg
      241 aaaactcttt ccagatcagg ttggtccagt ttgaaataag catcgtgtat ttgatatctt
      301 tgaataattt ctattgttct atgtactctg ggtcctactg agggacgaat agtcgatcct
      361 tgctcttgtt tagggtaacc attattttca ggtttcgagc tattaccatt ataagtgaac
      421 tggagtggat cgtaatcatg taaaagagct gctacaagga gaatttcgat atcgtcgaca
      481 gagaatctga aattatttat tctatttggt aacattttaa gcgtcatgta agaaacttca
      541 agactgtggt ggaaattatg atattctgta gatccttcgc ccaatccaat atcagaataa
      601 acaccatcaa ggaatctaat tagagtagag attttttcaa ttttgtcttg tcttattcct
      661 ttattttttg ctacatctaa aatggccagg actaacctgt cttctctgat atcggcgagc
      721 gtatcatttg cctcctttac tatcgattta tggaaacctg gaagtttttc tagaatttca
      781 ttataaatga tctttatggg caagctcttg tagatatata tccacagtcc tgttatcttc
      841 cagggatatt ttattctaaa tttctctctt tcaatgattt catccacaag aagcacaatg
      901 tttctgttta gttttccaat ttcacggttt gtgacaatcc tttctggatt gtttgatttt
      961 gtaccctgat aatcagctcg cattacagcc cattgcggta ttttgaccct ataccggacc
     1021 cgcttaatcg agccattcgt tgaccaaggg aatctaataa tttctttctc ggtcgtcgct
     1081 acatttcgat ttcttgtatt aagcaagtcg tcatctttaa caacctgaag aatcaattcc
     1141 ttattcggta cttgcagtcc aagtaataca tgccaatact tccccttgtc tacccattct
     1201 ggagcatatg tagctggatc ccaaaagtct atgggtccaa acgggatata cccatcctca
     1261 aactcgtgtg tttcgggatt atacgattta tattcatatt ttccaatttt aggattaatt
     1321 tgacacgcga gaattcgtgt attgttaact ctgtatgaag atttggtaaa ttccctgtgg
     1381 gccattactc cccagatagt acctagacca ctcaatagag taaaaccgaa gtaaaagaaa
     1441 tcaaatttgt aatgtatggc ataattgaga gctaattgga taccgaaaac ataacacgaa
     1501 aacatcccgg caaaaaacaa gaaaagaaaa aaccatcttg ctatattgtt ataaaataaa
     1561 ctaaatgatt tctggccgat atagtttgtc attctttgct tcatgcacat tcactgtcat
     1621 tatcaggcat cccattccta ttcttaattg atcgtatgat tatcgtcaat tattcataca
     1681 gtatcaatta aacttcgtta aaaattattc tatatataaa tgcgaccatg actcttcact
     1741 ttcatataag ttaggtaaaa tatcatttcc atattgcaat ttatgaagca atgtgttgat
     1801 aatggactag gcattgaatc aatattatct gttttcaaac tacaatcagt tttacaaaat
     1861 gcatcctttt gtttacctga agctgtcttg atatctcctt tacatcctta gcatcaccct
     1921 ttaaagaaaa tatttcaagg catctatctt tgtctatctt attatgcaag tgtacaatta
     1981 ttatcttgtc aaaatcatgt cttatcgatg atacttgatc gtcggagtct tcatcatgta
     2041 ctgccaaaag taacgaatta atttctccat ccaagtcttc tttcattcgt tcatctgata
     2101 agagatttct aattcctgcc cttatgattt ctgatcttcc tgaaaatccc aacgacttga
     2161 gcttatctaa actctcgatt atgtcttcat ttaatgagac gctcactatg gtcaataaga
     2221 ttttgataat cagttattgg atataataat tatggcatat tcaaggatca aagaaattga
     2281 ttaaagtcaa atgaggctat tgagaacgag gcaaaaatag gattactatg aaaaaaattt
     2341 tacaatttat ctcttcctaa agtcttgaaa taggtaactt gaagcatgaa tatttgatta
     2401 cgaaaaagag tcatgccgat cggtcgcagt ttttgaattg cacaggaaat attgtgaatc
     2461 taatcaggca agcttagaaa taaaaataat aactgtactg aaattatcaa ttctgctgct
     2521 aaacaagact tgatttttgc tatcactacc ctgtaaggaa ttaatagttg aaaaacgaaa
     2581 aatcgggtta ttgtcgtcat gtgaattatg ttattaacaa agaattacaa gttaattata
     2641 attaataaag aaagtatata ttcttaataa tctatgtata catgtgggga gaagaataag
     2701 atttttatat catttaattt tctcgcttct attttcctca ataggtcaaa ctttgtatgc
     2761 ccagaatcaa acatcaaata cgaatgcgac aacgctatta gatttgaacg ctccaaacgg
     2821 aacacaggaa ggtccaatgt atgtgctgga gaatattaca aattcatcac acaaattgac
     2881 agtcatatcg tctttctttc caattgatga attcgttgag aaagttggag gcgacaatgt
     2941 agaatcatct ctagtgattc cggcaggaat cgagccacat gattttgagc caacaattgc
     3001 ccaaatacag aatatcgatt ctgcagatgc cttggtatac aatgggttgg gaattgaaaa
     3061 ttggattaca aaaataagtc ctactcataa gattgatgct agcaagggtt tgaacgtttc
     3121 ttattctgac aatcgtaata tgaccttaga tccacatgta tggttggatc ctttgcttgc
     3181 aaaaaaacaa gtcgaaaata tacgggatgg tctaatgata attgatccta aaaacaggca
     3241 aacctacatt agtaacgcaa agactttttt agatgagatt gatacacttg acaagacaat
     3301 tagagctgaa ttggagtcgt gcaaaaaaag agactttatt tcatctcata actcgttttc
     3361 gtattttgct aaacggtacg gattaacaca acacagtatt tttaatactg gactagaagc
     3421 agaggcaact cctgcacgat tagcagaaat catcaattta gctaaaag
//
LOCUS       DASUMD010000153         2704 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_932524, whole genome shotgun sequence.
ACCESSION   DASUMD010000153 DASUMD010000000
VERSION     DASUMD010000153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2704)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2704)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2704
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_932524"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..981)
                     /locus_tag="VFX26_04425"
     CDS             complement(<1..981)
                     /locus_tag="VFX26_04425"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit alpha"
                     /protein_id="HEX5573754.1"
                     /translation="MVLKIPRKQYVELYGPTKGDRVRLGDTDLIIEIEKDLITYGDEL
                     VFGGGKSIRDGMGQASGIKSKYSLDLVITNTILMDPLLGIVKTDIGIKNGLILGIGKA
                     GNPNVMDGVSENMIVSSNTEVISGEHTICTAGTIDTHIHFISPQQIVEAICSGTTTMI
                     GGGTGPSEGTKATTCSPGPWNIHRMLESLDEFPVNFGLLGKGNDSLEPSLLEQINEGA
                     CGLKLHEDWGSTPATIDAALKVADKTDTQVAIHTDTLNECGYVDDTIKAISGRTIHTY
                     HTEGAGGGHAPDILKIAGELNILPSSTNPTRPFTVNTLEEHLDMMMVCHHL"
     gene            complement(984..1352)
                     /gene="ureB"
                     /locus_tag="VFX26_04430"
     CDS             complement(984..1352)
                     /gene="ureB"
                     /locus_tag="VFX26_04430"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0035550 - urease complex [Evidence IEA];
                     GO_function: GO:0009039 - urease activity [Evidence IEA];
                     GO_process: GO:0043419 - urea catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit beta"
                     /protein_id="HEX5573755.1"
                     /translation="MIPGEYFLSKSPILANVGKKTIKINVKNTGDRPIQVGSHTHFFE
                     TNKFLSFARNKTFGFHLNIPSGTSLRFEPGDSRIVELTEYGGKKIVFGFNSLVNGKLT
                     NKQKEISLLKLKKKGFMEEE"
     gene            complement(1371..1673)
                     /locus_tag="VFX26_04435"
     CDS             complement(1371..1673)
                     /locus_tag="VFX26_04435"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018003345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009039 - urease activity [Evidence IEA];
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0043419 - urea catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit gamma"
                     /protein_id="HEX5573756.1"
                     /translation="MFLSPRDIDKLYIFISAEVARKRKTRGLKLNYTESVALIADHIL
                     EGARDGRSVSELMNSGRHVLHRADVLPGVPELVQSVQVEATFDDGTKLVTVHDPIV"
     gene            1748..>2704
                     /locus_tag="VFX26_04440"
     CDS             1748..>2704
                     /locus_tag="VFX26_04440"
                     /inference="COORDINATES: protein motif:HMM:NF012346.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TCP-1/cpn60 chaperonin family protein"
                     /protein_id="HEX5573757.1"
                     /translation="MEHKNMQLFGNGVKRTYGTEARRYNLLAARLIADLVKGFLGPRG
                     LEKMFIDILGEMTVTKDGATFLRKIDVEHPAAKVIIEASNAVDNAVGDGTTSVVVLAG
                     ALVEKAEELLEMGISPQTISDGYYNGLQMAIEIIREVAIESSNHDKEIMKYLADTCLR
                     SKAVSHFTEEMMIPNLVVDGICSIADFSKSYIDVDDIKIEEKIGISSETELIHGIVID
                     KTIDESLMPKFVENAKILLLDNDIQDERTKTDAEIRISDPSEMTQFLDSKTRNLLQKT
                     GYVIESGANVIFSRGGIDPLALNHFSKNMMLTVRRVKENDLLW"
BASE COUNT          806 a          500 c          495 g          903 t
ORIGIN      
        1 tagatgatga cacaccatca tcatatcaag gtgttcttca agagtgttta cagtaaatgg
       61 tcttgttgga tttgtggatg aaggtagtat attgagttca ccggcaattt ttaggatatc
      121 tggtgcatgt cctccaccgg caccttccgt atgatacgta tgaatcgttc tgccagaaat
      181 tgcctttatt gtatcatcta catatccaca ctcattcaga gtatctgtat ggattgcgac
      241 ctgtgtgtct gttttatctg caacctttaa tgcagcatct atggtagctg gagtggatcc
      301 ccaatcttca tgaagcttta gaccacaagc cccttcatta atttgctcta agagtgaggg
      361 ttccaatgag tcatttcctt ttcccaacaa tccaaaattt accggaaatt catctagtga
      421 ttcgagcatt ctatgaatat tccaaggtcc tggactacaa gtagtagctt tagttccttc
      481 agaaggacca gttcctccac ctatcatcgt ggtagtaccg ctacatattg cttctactat
      541 ttgctgaggt gaaataaaat ggatatgagt atcaatagta cctgcagtac agatggtgtg
      601 ttctcctgaa ataacttcag tgtttgagga gacaatcatg ttttcagata ctccgtccat
      661 tacattggga tttccggctt tgcctatgcc caaaatcaat ccatttttaa taccaatatc
      721 tgtttttaca atgcccaaca aaggatccat caatatcgta tttgtaatca caagatctag
      781 agaatatttg ctttttattc cacttgcctg tcccattcca tctcgaatac tcttgcctcc
      841 tccaaaaaca agttcgtctc catatgttat gagatccttt tcgatctcta ttataagatc
      901 tgtatctcct agtctgactc tgtctccctt tgtcggtccg tatagctcca catattgttt
      961 cctaggaatt tttagaacca tgattattct tcttccataa aacccttttt ctttaatttc
     1021 aagagagata tttctttttg tttatttgtt agtttaccat taacaagact attaaaacca
     1081 aagacaattt ttttgccgcc atattctgtt aactctacaa ttctagaatc ccctggttca
     1141 aacctcagcg atgttcctga tggaatattt aggtgaaatc cgaatgtctt attcctggca
     1201 aatgacaaga atttgtttgt ttcgaaaaaa tgtgtgtgag agcctacctg aatgggtcta
     1261 tctccggtat tttttacatt aattttaatc gttttttttc ctacgttggc aagaattgga
     1321 ctcttagaca agaaatattc accggggatc atgatttaat cctccattat tcaaacaata
     1381 ggatcgtgaa cagtcactag tttggtacca tcatcgaagg ttgcttccac ttggacactt
     1441 tgtactagtt ctggtactcc aggcaagaca tcagctctat gtaagacatg tcttcccgag
     1501 ttcatgagtt cagaaaccga cctgccatct cgtgctcctt caaggatatg atctgctatt
     1561 agtgcgactg attcagtata gttgagtttt aaacctcttg tttttctttt tcgtgcgacc
     1621 tctgcactaa taaaaatata taatttatca atatctcgtg gggatagaaa cattctaagt
     1681 tcaaaaatta ttataaagtc atatatttat aattgatctc aaattatcaa ttcaagataa
     1741 attttccatg gagcataaaa atatgcagtt atttggtaat ggtgtaaaga gaacatatgg
     1801 taccgaagct aggagataca atctgttagc tgcaagattg attgctgatc ttgttaaagg
     1861 atttctgggt ccacgaggac ttgaaaaaat gtttattgat attcttggtg aaatgaccgt
     1921 tactaaggac ggggcaactt ttctaagaaa aattgacgtt gaacaccctg ctgctaaggt
     1981 aattatcgaa gcttccaatg cagtggataa tgctgttggg gatggtacta cttcagtagt
     2041 tgtacttgcc ggagcactag ttgaaaaagc agaagaatta ttagaaatgg gaatttctcc
     2101 acagacaatc tcagatggtt attacaatgg attacagatg gcaattgaaa ttattaggga
     2161 agttgctata gaatcatcaa atcatgacaa agagataatg aaatatcttg ccgatacttg
     2221 tttaaggtca aaagctgttt cccattttac tgaagagatg atgattccca atcttgttgt
     2281 tgatgggatc tgtagtattg ccgatttttc aaaaagctat attgacgtag atgatattaa
     2341 aatcgaagaa aaaataggaa ttagttctga aactgagctt attcatggaa ttgtaataga
     2401 caaaacaata gatgaatcat tgatgcctaa atttgttgag aatgcaaaga tcttgctgct
     2461 tgacaatgac attcaagatg aacgcacaaa aactgatgcc gaaattagaa tttcagatcc
     2521 tagtgagatg acacaattcc ttgatagcaa gactcgtaat ttacttcaaa agactggata
     2581 tgtaatcgaa tctggtgcta atgttatttt ttcccgtgga ggaattgatc ctctcgcatt
     2641 aaatcatttt tccaagaaca tgatgctgac agtcagaaga gtcaaagaaa atgatttgct
     2701 atgg
//
LOCUS       DASUMD010000154         3231 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1153011, whole genome shotgun sequence.
ACCESSION   DASUMD010000154 DASUMD010000000
VERSION     DASUMD010000154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3231)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3231)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3231
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1153011"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1380)
                     /locus_tag="VFX26_04445"
     CDS             complement(<1..1380)
                     /locus_tag="VFX26_04445"
                     /inference="COORDINATES: protein motif:HMM:NF044870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YncE family protein"
                     /protein_id="HEX5573758.1"
                     /translation="MSYFFLLAIIFFFSISVNCISAQDENDEKVISLESNPVISSGSF
                     PVGIDINPITNKLYVANQFSNTISVIDTEKSKVEANIDAGESPYDVEVNPFSNRIYSS
                     NRESNTVSVIDGFTNKELTEIPVGNSPVGIGTNLAANWVYVANMDSKTISIIDPIVNK
                     VKQSLKYASSPYDIIVNPHTNRVYVSDLGKDSVLVLDGNNNTLISTIPVGSKPSVLAI
                     NTQTNTIYVSNFRNNSISVINGTANKVDTNIKVGDNPVGITVNPRINKIYVNNLADNS
                     VSVINGTTNKVIENISLEPTIVASGVNNAFINIPLKVTFPLIASKLTVDPNTNFTYVT
                     NTRTNGIITIDGKTDKVITKILIEINPPNAGSVKCNDIILGAGEYITLPVISTARCEA
                     IPDRGYDFGHWSVTNNTNQNPVVFNVTGYETITANFKGAILTETFIVLTSVVIGLVST
                     IGGWFYRQKS"
     gene            2006..2929
                     /locus_tag="VFX26_04450"
     CDS             2006..2929
                     /locus_tag="VFX26_04450"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEX5573759.1"
                     /translation="MQGLRLIFSNFTNSNIIIGYLSAIVAAMLFGSVSTLAKPLLSTV
                     DPIILSSIIYLTAGLFFTPFAARTRSKITRKFFFLILTSAISGAVIAPIVFFLGLKMS
                     TAADTALLANGETVFSILFALLIFRERLRPIGYFAVTLILTGVFLVTTNLDFNSSIFS
                     LNLGNVLVILSTIIWGFDNNICKIIVRQVHVSRLIQLKALIGGSILLGTVVISGIPFN
                     IQSEQILPILLLGVFGFAISLYLYLHSIKRIGVIKASSLLSLSAVFGLVFALIFLQEL
                     ISINQVIAISVMIFGIHLMYIYEKKDEIILK"
BASE COUNT         1021 a          545 c          544 g         1121 t
ORIGIN      
        1 tgatttctgt ctgtaaaacc aacctccaat tgttgaaact agacctatta ccacggaagt
       61 taacacaata aacgtttcag tcaaaattgc tcccttgaaa tttgcggtta tagtttcata
      121 accagtaaca ttaaaaacta ccggattttg atttgtattg ttcgtgacag accaatgacc
      181 aaaatcgtat cctctgtcag gtattgcttc acatctagca gttgaaatga caggtaatgt
      241 gatgtattca ccagcaccca atatgatatc gttacatttt acgcttccag catttggggg
      301 attaatttca attaatattt ttgtaatcac cttgtctgtc tttccatcaa tcgtaattat
      361 tccgttggtc ctagtattag tgacgtatgt gaaatttgta tttggatcta ctgttaattt
      421 gctcgcaata agtggaaaag ttacttttaa gggaatatta atgaacgcat tattgactcc
      481 ggaagcaaca attgtaggtt ctaaagaaat attttctatc actttgtttg tcgtcccatt
      541 tattacgcta acagaattgt ctgccaaatt gttaacataa attttgttaa ttcgtggatt
      601 aacggttatt ccgactggat tatctccgac ttttatgttg gtatcaactt tgttggctgt
      661 tccatttatt acactaatag aattgtttct gaagtttgag acgtaaatgg tattggtttg
      721 tgtattgata gccagtacag acggctttga accgactggt atggttgaga tcaaagtatt
      781 attatttcca tccagcacta aaacactatc cttccctaaa tctgaaacat agaccctgtt
      841 ggtatgtgga ttgactatga tatcatatgg tgatgaagca tacttcaatg attgttttac
      901 cttattaaca attggatcaa taatgctaat tgttttcgag tccatgtttg ccacataaac
      961 ccagttcgca gctaaattgg tccctatccc caccggagag tttcctacag gtatttcggt
     1021 aagttcttta ttagtaaaac catcaattac tgaaactgta ttagattccc ggttagaaga
     1081 atatattctg ttagaaaagg gatttacctc tacatcatat ggcgattcgc ccgcgtcgat
     1141 atttgcttcc actttggatt tctcagtgtc tataactgat attgtattag aaaattggtt
     1201 agcaacataa agtttgtttg ttatcggatt gatatcgatc ccaactggaa aactcccgga
     1261 actaattacg ggattggatt ctagggatat taccttctca tcgttttcgt cttgagccga
     1321 gatacaattt actgaaatac taaaaaagaa tatgatagct aataaaaaaa agtaagacat
     1381 cagcaaataa tatttcaaat aaacatttta tgttgaatgg atataaaaag taattactaa
     1441 taatcattca aatttatcga tgcttgattc ctgtttaaag aaattggcgt aatgcaattg
     1501 ctcagaaata accacgaaat gatattgttc tcccactgga tttgactatg aaagagatta
     1561 ccaaaatgta gtttatcgca cctatttgtt atatttctga ttaggacgaa aaacgatttt
     1621 tacgataata ttcagaacta atatgataac cccagcaaga atgaacataa aaccattggt
     1681 tgtccaagaa ggattgctgt acataaatga actttgagga cccaatagtg actgagattg
     1741 tgcagtaaaa attaaacctg ctaatacgag tacgatgcca ataatttcaa ccagtatttt
     1801 catgtattat caaataaagt ttgaaatctg catatctata tgtatatgtt atcgacattc
     1861 atatttcata tacactttta gtaactttat gtttaatcca aaaaaggaca actcgacttt
     1921 tcttaattgt caacttacac cgagttgatt gctaagatga gtacaatatg agtaagtttt
     1981 aatatctata aaatgtgcgt catggatgca aggattaagg ttgattttta gtaattttac
     2041 caactccaat ataataattg ggtacttgtc ggctattgtc gctgctatgc tctttggaag
     2101 tgtgtctacc ctagcaaaac ccctcctgtc aacagttgat cctattatcc tttcatcaat
     2161 catttaccta acagccggac tcttttttac accttttgcg gcaaggacac gatctaaaat
     2221 tacaagaaag ttcttttttc ttattctaac aagcgcgatt tccggcgcag taattgcacc
     2281 cattgtattt tttctaggat taaagatgag tacagccgca gacactgcgt tacttgccaa
     2341 tggagaaact gtcttttcga ttttgtttgc gttacttatc tttagagaaa gattgagacc
     2401 tattggatat tttgcagtaa cattgatcct aaccggagta tttctggtaa caacaaatct
     2461 tgattttaat agttcaatat ttagtttaaa tttgggtaac gtgttagtca tcttatcaac
     2521 aattatttgg ggatttgaca acaatatttg taaaataata gtcagacagg tacatgtgtc
     2581 aagattgatt cagctaaaag ctttaatcgg aggttccata ttattaggaa cggtcgttat
     2641 atcaggaatt ccttttaata ttcagagtga acagatactt cctattcttc ttctaggtgt
     2701 ctttggattt gccatatcac tctacctata cctacatagc ataaaaagga ttggagtaat
     2761 caaggcatca tccttgttat ctttatctgc agtatttgga ctagttttcg cattaatatt
     2821 tctacaggag ttaattagta tcaatcaagt aattgccata tcagtgatga tatttgggat
     2881 acatttaatg tatatatatg aaaagaaaga tgaaataatc ctcaagtgaa tttttggagt
     2941 agcgagataa aaaaaatatc accttctgat ttgcctgaca atttgggaaa tcagtcttag
     3001 caatagaccc ttctgaatcg gaatggccgc tccaatattc aggtgactag gaaatcatca
     3061 tcttacattt ccaaagctct aatttttttt aatgctctta tatttgatca aaaaatattt
     3121 ccatttcact agtaattctc gggttttaat acttaataag gcatttataa agatgtatta
     3181 ataaaataag aagaccataa ttgattggtg cctatccggt gagaaaagca c
//
LOCUS       DASUMD010000155         2054 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1486673, whole genome shotgun sequence.
ACCESSION   DASUMD010000155 DASUMD010000000
VERSION     DASUMD010000155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2054)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2054)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2054
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1486673"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..800)
                     /gene="nadA"
                     /locus_tag="VFX26_04455"
     CDS             complement(<1..800)
                     /gene="nadA"
                     /locus_tag="VFX26_04455"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008987 - quinolinate synthetase A
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HEX5573760.1"
                     /translation="MTLVQSMHSDQINQLKKERNAIILAHNYQVPEVQDVADFIGDSL
                     ALSREAAKTDADIIVFCGVHFMAETASILCPEKTVLIPDLEAGCSLASTINSYELKKW
                     KQEHPQAVVVSYVNTSAEVKALSDYCCTSSNAVKVVNSIPRDTEILFLPDMFLGSYVG
                     QVTGRKNLYVWPGECHVHAGITAADINNIFQKYNNAEFMIHPECGCTSSTLYGLASGD
                     ISRKAHILSTEGMMQHAKKSESSQFVVATETGIMYRMKKENPDKMFIPV"
     gene            969..1151
                     /locus_tag="VFX26_04460"
     CDS             969..1151
                     /locus_tag="VFX26_04460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S30e"
                     /protein_id="HEX5573761.1"
                     /translation="MPTHGSLTKAGKVRGQTPKIEGKKRVSPISKLRNKINFVKRFEK
                     RRQPGQKKPERMGRRR"
     gene            1244..>2054
                     /gene="nadX"
                     /locus_tag="VFX26_04465"
     CDS             1244..>2054
                     /gene="nadX"
                     /locus_tag="VFX26_04465"
                     /EC_number="1.4.1.21"
                     /inference="COORDINATES: protein motif:HMM:NF009828.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate dehydrogenase"
                     /protein_id="HEX5573762.1"
                     /translation="MEKKVAVIGYGSIGKEIIASARRHEIPNARIVAVFDKSSQVINS
                     VEIENSDVHLFSDFDEFYNSQTYSNLDIVIECASKDAVREYGKKIIESKKDLIVLSVG
                     AFSDKEYLSELQDLSNLNNTRILIPTGAIAGLDSIRSVKKYLQSLSITTTKHPKSFVG
                     APFFKSSRIRLDEINSETVLFEGNAITAIEFFPANVNVAVSIALAGIGLEKTRVKIIA
                     DPLISVNKHEIVGKGSFGGIHIVVENIPSPTNPKTSYLASLSAIECLRSLCN"
BASE COUNT          683 a          356 c          392 g          623 t
ORIGIN      
        1 actggtatga acattttgtc tggattttct ttcttcattc tatacatgat ccctgtttct
       61 gttgcaacaa caaattgact actctctgat tttttagcgt gctgcatcat cccttcagta
      121 gacaatatgt gagctttcct acttatatca ccagatgcta gaccgtacag agttgaagaa
      181 gtacagccac actcaggatg gatcatgaat tctgcattat tgtatttttg aaaaatatta
      241 ttaatgtcag ctgcagtgat acccgcatga acatgacatt ctcctggcca tacatacaag
      301 ttcttcctac cagtgacttg acctacgtat gaacccaaaa acatgtcagg taggaataag
      361 atttcagtat cgcggggaat actgtttaca accttgactg cattggatga agtgcaacaa
      421 taatcagaaa gagcttttac ctctgcactg gtattaacat aactaaccac gacagcctga
      481 gggtgttctt gtttccattt ctttaattcg tatgaattta tagttgatgc aagagaacaa
      541 cctgcctcta gatcgggaat caatacggtc ttttcagggc atagtattga agcagtttct
      601 gccataaaat gaacaccgca aaatacaata atatcggcat ctgttttggc agcttctctt
      661 gataatgcta gggaatcacc aataaaatca gctacatctt gaacctcggg aacttggtaa
      721 ttgtgtgcca aaatgatggc attacgctct ttctttagtt gatttatctg atccgaatgc
      781 attgattgaa ctaatgtcat ctgatgcgct tgttttacat agttatagat ttaaagtagt
      841 ataatttagg acaacattgc ctatttcatc tatgataagg gcaatacttg ccactttgat
      901 gtaacattga gaaaacatga aaaatacgca gtaatagata tattatatcg tagtcaaccc
      961 tatatcaaat gccaactcat ggatcgttaa caaaggcggg aaaggtaaga ggtcaaacac
     1021 ctaaaattga gggaaagaag agggtgagcc caatctcaaa attaagaaac aagataaact
     1081 ttgtaaagag atttgaaaaa agacgccaac ctggacaaaa aaagccagaa cgcatgggta
     1141 gaagacgtta atctgaattt cttaatctta tcttatttta gacatccttc atagcttagc
     1201 aacatgtaaa tccaaatatt gataaagtta aaattattac aacatggaga aaaaagttgc
     1261 ggtaattggc tacggcagca ttggtaagga gattattgca tcagcaagaa gacatgagat
     1321 tccaaatgcc aggattgtag cagtatttga taagtcatct caagttatta attcggttga
     1381 gattgaaaat agtgatgtac atttattttc agattttgat gaattctata attctcaaac
     1441 ttattccaat ctagatatcg taattgagtg tgcttcaaaa gatgccgtta gagaatacgg
     1501 taaaaaaatt atcgagtcaa aaaaggacct gatagttctt agtgtgggcg cattttctga
     1561 taaagaatac ttgtcagaat tgcaagattt gtcgaacttg aataatacca gaatattgat
     1621 acctactggt gctatcgctg gattggattc cattagaagc gtaaaaaaat atctgcaaag
     1681 tttgtctatt acaacaacaa agcatcccaa atcatttgta ggtgctccgt ttttcaagag
     1741 ctcaagaatt aggttggatg agattaatag cgaaacagtc ctgtttgaag gtaatgctat
     1801 tacagctatt gaattttttc ctgcaaatgt gaatgtagca gtttcaatcg cacttgctgg
     1861 aattggttta gagaaaactc gcgttaagat aatagcagac ccactgatat cggtaaataa
     1921 acatgaaata gtaggtaaag ggagctttgg aggaatacat attgtggtcg aaaacattcc
     1981 aagtcctaca aatcctaaaa ccagttactt ggcatctcta tctgccattg aatgtctgag
     2041 aagcttgtgc aacg
//
LOCUS       DASUMD010000156         3987 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_822231, whole genome shotgun sequence.
ACCESSION   DASUMD010000156 DASUMD010000000
VERSION     DASUMD010000156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3987)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3987)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3987
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_822231"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..364)
                     /locus_tag="VFX26_04470"
     CDS             complement(<1..364)
                     /locus_tag="VFX26_04470"
                     /inference="COORDINATES: protein motif:HMM:NF021287.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAC2 family protein"
                     /protein_id="HEX5573763.1"
                     /translation="MVLIDIFAKKKIDHFTVFASLPDMGRVGGLVSSFLASNLKAEHI
                     ANIISSPKPWVNVKDGVVESATDVYKIYFSDNDKLLILTGDVQPEDHRELLDLCHVFL
                     DFCLSIGKIKRLYTAGGSL"
     gene            complement(433..996)
                     /locus_tag="VFX26_04475"
     CDS             complement(433..996)
                     /locus_tag="VFX26_04475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573764.1"
                     /translation="MTSGKYFNRAVIALDAPHVGYVVRETDDKIVVFGDGKERYDIPL
                     SEIQTVSKNVLVGLKFDEIAKKYSVDRDAPLPTSKYVDPWGADGTTDLKTYMKEYAKT
                     LFNKGVRIANEDHVGHVMKETDDKIIIFGERDYRFDVPKSKIIAVGRNVILGMDWDEL
                     FTCKVDKNAPLPSGEPIDNLVEEEDKL"
     gene            1465..1620
                     /locus_tag="VFX26_04480"
     CDS             1465..1620
                     /locus_tag="VFX26_04480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573765.1"
                     /translation="MERARVKRNVHYDDETLEKMKRYYKIDDNEELLRFIKTQGLKNY
                     NFDIDNS"
     gene            1699..2886
                     /locus_tag="VFX26_04485"
     CDS             1699..2886
                     /locus_tag="VFX26_04485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEX5573766.1"
                     /translation="MSTSFLIQDFAVVMIVAAVMVFVTHKLKQPMVIGYILAGMVIGP
                     FTPPFSLIHEVGTINTLAELGIIILLFVIGTEFPITKLKSVGRISVIVGIAESLGTLL
                     ITFFVGQTLGFSQFDSMFLALAMSVTSTVVTVKVLEELNMINEKSSVLIMGILIVEDV
                     IVITMLGILQSLALTAAVSFVQVILSVGIVVGFIAAILILGSKYLTPLIDKLARKTDY
                     SVLIIVILGLAFGLSFAAIELGLSPVIGAFLAGVLVAESNSAGIARVITIPLRDVFAA
                     LFFVSVGALVDVSKIPLFIIPALILIVTSFAAKMVIVIPFLIKAGYDTTTAVRTGLGL
                     SSARGEMSLIVGKGGQDVGAVSSYILPILGVVTIVTTFVTPYILKLGIKLSISSNSSE
                     DKK"
     gene            complement(2949..3869)
                     /locus_tag="VFX26_04490"
     CDS             complement(2949..3869)
                     /locus_tag="VFX26_04490"
                     /inference="COORDINATES: protein motif:HMM:NF038353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxLYD domain-containing protein"
                     /protein_id="HEX5573767.1"
                     /translation="MTVYIGQLNSNSVYGEENIEISSGSPFVDSSGKLNIIGVITNLG
                     TTSEQVTVGLEVHKKIDGSKTTLQDTTFSKIIYPGKESPFKFKISEDYDVLSKPYVLK
                     TDNAHEPYYNIIVQNYSNFPVGQNRELIGTLKNTGNVVVQNISVYASVHDKNGTQIDS
                     IQSNTIPVLNPGEVKHFSARPDHVIVNDANYFSCAGFDPKAPINTLNLGNGKFLPYGL
                     ESVAKISNFSYDNSTDSILFTVDHYNPLGGIVTFKIPQLDSSHDISIFLDNLGVEDQQ
                     ISKNGKTITSNIFVPPNEHSVRITGILNQS"
BASE COUNT         1236 a          696 c          709 g         1346 t
ORIGIN      
        1 ttaatgaacc acctgccgta tagagccttt ttattttacc aattgacaaa caaaaatcaa
       61 gaaatacatg acacaaatcg agaagttccc tatggtcttc aggctggaca tcgccagtaa
      121 gaattaatag tttgtcgtta tccgaaaaat aaattttgta aacatccgtt gctgattcta
      181 caactccatc tttaacatta acccatggtt tgggacttga gattatgttc gcgatatgtt
      241 cagctttcaa attactagcc aaaaatgaag ataccaatcc cccaactcta cccatatctg
      301 ggagtgaagc aaataccgta aaatgatcta ttttcttttt tgcaaaaata tctatcaata
      361 ccatttttgt aactatcctc cgtgaatact agactggtaa agaactgagt gtagattcaa
      421 gggagaagag ttttaaagtt tgtcttcttc ctctactaaa ttgtctatag gttctccact
      481 tggcagtggt gcattcttat caactttgca ggtgaatagt tcatcccaat ccattcccaa
      541 tatcacgttt cttccaacag caatgatctt cgatttagga acgtcaaatc gataatcacg
      601 ttcaccgaat atgataatct tgtcatctgt ttccttcatc acatgtccta catgatcctc
      661 atttgctatc ctgactccct tattgaagag ggtttttgcg tattctttca tatatgtttt
      721 caaatcagtc gttccgtctg ctccccaagg gtccacatat ttacttgtag ggagtggtgc
      781 atctctatca acggaatatt tcttagcaat ctcgtcaaac tttaatccaa ctaatacatt
      841 tttgctcaca gtctgtattt ccgataacgg tatatcatat ctctccttgc cgtcgccgaa
      901 tacaactatc ttgtcatctg tttcacgtac aacatatcca acgtgaggtg cgtccagtgc
      961 aattacagcc ctattgaaat attttcccga tgtcatatgg tattttgaat atctattatg
     1021 atgtatatta ataaatagtt caaacagcaa atttacctcg actgaccgaa tttagtgata
     1081 tatgaagagt acgatatgat ttttctattt tatcgaatcc gaattaaaga tttcctaaca
     1141 agattgtcga aattcaagga attttcatta tattaaaaca aggatgaagg ctaatatagc
     1201 caaatactgt cgtttaactc atcaagaaaa caataagcgt tcctatagcg tctcttaaaa
     1261 ggaaaaagca caatgatttt gtatacgatg atttagcttt tgaaaaatta atgcgatatt
     1321 atggatttga aaaagaagag gacttaatcg agttcttgaa gtctcagtgt atacaggatt
     1381 agtaatcaat aatttttgta aaagttcaat ttttcatgat atttatttga aaaatttaag
     1441 tgcgattaga tattttaata tggtatggag agagcaagag tgaaaagaaa tgtacattat
     1501 gatgatgaaa ctttagaaaa gatgaaaaga tattataaaa ttgacgataa tgaagaactt
     1561 ttgcgattca taaagactca ggggttaaag aactataatt ttgatataga taactcatga
     1621 aagatgtcaa taggattgta attgcatatt gactattggg tagtgtaatt cttgtatttc
     1681 ttgcacctca taacacagtt gagcactagc ttcttaattc aagattttgc agtggtcatg
     1741 attgtagcag cagtaatggt attcgttacg cacaaactca aacaaccaat ggtaattgga
     1801 tatattctgg ccggtatggt tattggtcca tttactcctc catttagttt aattcatgag
     1861 gtaggcacaa tcaatacact agctgagctt ggaataatca tacttttgtt tgtaattggg
     1921 actgagtttc ccattacaaa attaaaatct gttggaagaa tttctgtgat tgtaggtatt
     1981 gcagagtcac ttggaactct actaattaca ttcttcgttg gacaaacact tggattttca
     2041 caatttgact caatgttctt ggcacttgcc atgtcagtta ctagtactgt agttacagta
     2101 aaggtactag aggagttaaa catgataaat gagaaatcaa gtgtgttaat aatgggaata
     2161 ctaattgtag aagatgttat agtcattacc atgttaggta tcctacaatc acttgcctta
     2221 acagcagcgg tatcatttgt tcaggtaatt ctgtcggtag ggatagttgt ggggttcata
     2281 gcagcaattc taatcttagg ttcaaaatat ttgacaccat taatagacaa gctagccaga
     2341 aaaactgatt attcagtatt gataatagtt attctcggtc tggcatttgg tttatcattt
     2401 gccgcgatag aacttggatt gtcaccagta ataggtgcat ttttggcagg agttctagta
     2461 gctgaatcaa atagtgctgg aatagctcgt gttataacca tcccacttcg agatgtgttt
     2521 gcagcattat tcttcgtatc agtaggtgct cttgtggatg tgtcaaaaat tccacttttt
     2581 atcatacctg ctctaatcct tattgtgact tcatttgcgg caaaaatggt gattgtcata
     2641 ccttttctaa ttaaagcagg ttatgataca accactgctg ttagaactgg tcttgggctg
     2701 tcatctgcga ggggagagat gtcactaata gttggaaaag gtggtcaaga tgttggtgcc
     2761 gtgtcttcat atatactccc tattttagga gttgttacaa ttgtcaccac ttttgtaact
     2821 ccatatatat taaaactcgg catcaagttg agcatttcat ctaattcgag cgaagacaag
     2881 aaatagttgg agctaaatta gatgaatgtc actaattcaa cgtccctagg tcatctgaaa
     2941 gtgaaggatt aggactgatt tagaatgcca gtgattctaa cggaatgttc atttggagga
     3001 acaaaaatat tggaagtaat tgtcttacca tttttgctta tctgctgatc ctctactcct
     3061 aaattgtcca aaaatattga tatatcgtga ctactatcta attgtggtat cttaaaagta
     3121 acgatacctc ctaacggatt ataatgatcc actgtaaata atatactatc agttgaatta
     3181 tcataactga agttgcttat cttcgcaacg ctctccaatc catagggcag aaactttccg
     3241 ttacctaaat taagggtgtt aattggggcc tttggatcaa aacctgcgca actaaaatag
     3301 tttgcatcat ttacaatgac atgatctggt ctagctgaaa agtgttttac ctcacctgga
     3361 tttagtacgg gtatagtatt agattgaata gaatctattt gcgttccgtt cttgtcatga
     3421 actgatgcgt acacacttat attctgaacc acaacattcc ctgtattctt tagtgttcca
     3481 atcagttctc tgttttgacc tactggaaaa ttagaataat tttgcacgat gatattataa
     3541 tagggttcat gtgcattgtc cgtctttagc acatacggct tgctcaggac atcataatct
     3601 tcacttattt taaatttaaa gggagactcc tttcccggat aaataatttt actgaatgta
     3661 gtatcttgta gggtagtctt tgaaccatca atttttttgt ggacttctaa tcccacggtt
     3721 acctgttcag atgttgttcc aagattcgtt attacaccta tgatattcaa tttgccactt
     3781 gaatcaacaa agggagatcc agaagaaatt tctatatttt cttctccata gacagaatta
     3841 gagttcagtt ggccaatata cactgtcatc agcagagtaa tcagaataat tgtgatttga
     3901 ttcacaacag tatattctca ggggaaaata aatatcatta tgaaacggaa ctgagaacca
     3961 gtttctatag aatcaaactc aatctag
//
LOCUS       DASUMD010000157         3082 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_490801, whole genome shotgun sequence.
ACCESSION   DASUMD010000157 DASUMD010000000
VERSION     DASUMD010000157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3082
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_490801"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2053)
                     /locus_tag="VFX26_04495"
     CDS             complement(<1..2053)
                     /locus_tag="VFX26_04495"
                     /inference="COORDINATES: protein motif:HMM:NF024867.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006302 - double-strand break repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX5573768.1"
                     /translation="MVYIKKLEIYGFKSFGFKNTVLHLNNGLVAVTGPNGSGKSNILD
                     AIMFALGENSPKLLRVDKFQSLFHDSENSSHRLVRVNLSFDNSDRGIPIDMDTVSMSR
                     EMEGQTGESQYYLNGKKVSKNTILELLEIMVAVPNKLNIVQQGMITRISELNSEERRK
                     VIEDIVGLSYFDDKKEESIKQLEESDRRLEVALARMDEIKKRINELEAERNDQLRYTF
                     IESQIKRFKAIKYSNKIRYLKDEIDKRNKLLATNESNLDVLSKNREELRKEIEKIDLE
                     KSSFMNQVDVSNKSKAQIDTKLTDVIYNIEREKAIIKEAKLRLAYIEERFTFIESEGE
                     KIEIEFENSNKTLYDKKSLSEDKRSHLAQLKSELEILNARIDEISYHVNRNKKLREGL
                     FQKKSKLAEIGAHLNILNARLEERRKFNINKINENTSSIEIMNRSLGEKEIELKSLDV
                     QTCYFDLDTERKLLEDLKNKSQLFINEIGAYENTVSKVQKFALPHEEKYAMAVQLSNE
                     DFAIADLIKNSQEFNVIGIVRDLLRYDDVYKKAVFAVAKDWMKCCIVPTVKEMIRLAS
                     YIKEKNLPRFKIISSELLNSVNREQVELGGYDYIGNLADLVHSSIPNLIDFIFGNVHV
                     VRNSKTAYELSKNGYECVTIAGELFEPHANSVSLDFGSKISDLTKEIILSDSIESLLK
                     NS"
     gene            complement(2177..>3082)
                     /locus_tag="VFX26_04500"
     CDS             complement(2177..>3082)
                     /locus_tag="VFX26_04500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol-3-phosphate synthase"
                     /protein_id="HEX5573769.1"
                     /translation="FDVVESKVGHDLSEAIFASPNNTIKIADVPSTGIKVQKGKVLDG
                     VGKRLNERVKISDSSPADVSKVLKESGAEILVNYLPVGSREATKYYVEQCLDAGVSFI
                     NAIPVFIASTPKWQQAFSDKNLLCAGDDVMSQLGATVLHKTLVKLFVDRGVKVDETYQ
                     LNVGGDMDFYNMLDEERLEDKRISKTSAVAAMAPYEVPMRIGPSDFVGFLANDKVCYI
                     SMRGKYFGRVPIEVDVKLKVVDAYNSAGVMIDAIRGTKIAIDRGITGQLDSVSAYCFK
                     HPPVQKPYLDAKNSFMEFVEGKRER"
BASE COUNT          854 a          642 c          472 g         1114 t
ORIGIN      
        1 tggaattttt tagcaatgat tcaattgaat cacttaatat tatttccttg gtaagatccg
       61 atattttaga accaaaatcc aatgagactg agtttgcgtg tggctcaaac agctcacctg
      121 caatagtaac gcattcatat ccatttttgg ataattcata agctgtttta gaattcctta
      181 caacatgtac atttccaaag ataaaatcaa tcagattcgg aatacttgaa tgcaccaaat
      241 ctgccaggtt tcctatgtaa tcataccctc ccagctcaac ttgttctcta tttacagaat
      301 tgaggagctc tgatgaaata attttgaatc gaggaagatt tttttccttg atatacgagg
      361 caagtcgaat catttctttt acagtaggaa caatacaaca tttcatccaa tctttagcaa
      421 ctgcaaaaac tgccttttta tacacgtcgt cgtatctcaa aagatccctt actattccaa
      481 tgacattgaa ttcttgtgag ttttttatta gatcggctat tgcaaaatcc tcatttgata
      541 gctgaactgc catggcatat ttttcttcat gcgggagtgc aaatttttgc accttgctaa
      601 cagtattttc atatgctcca atttcattga taaataattg acttttattt tttagatctt
      661 caagtagttt tcgttccgta tctaaatcaa agtaacaagt ctgaacatcc aaacttttta
      721 actcgatttc cttttcacca agagatctat tcataatttc tattgatgaa gtattttcat
      781 ttatcttgtt gatattgaat tttctccttt cttccagtct tgcattaaga atattgagat
      841 gagctccaat ttcagctaat tttgatttct tttggaaaag cccttccctt aacttcttat
      901 ttctgttcac atggtaggat atctcatcaa ttcgggcgtt gaggatttct aattcacttt
      961 tcaattgagc aagatgtgag cgcttatctt cgcttaaact ttttttatca tatagcgttt
     1021 tatttgaatt ttcaaattca atctcaattt tttccccctc cgattctata aacgtaaatc
     1081 gttcctcgat atatgccagg cgtaactttg cttccttgat tattgccttt tccctctcaa
     1141 tgttgtaaat gacatcagtt aattttgtat caatttgggc cttggacttg tttgaaacat
     1201 caacctgatt catgaaactt gatttttcta gatcaatttt ttctatttcc tttcttaact
     1261 cttcacggtt tttggacaag acatcaagat tactttcatt cgtagccaac agtttgtttc
     1321 ttttatctat ctcatccttc aagtatctaa ttttgtttga atatttaatt gccttgaatc
     1381 tctttatttg agactcaatg aaggtatatc ttaattgatc atttctttca gcttcaagtt
     1441 catttattcg cttcttgatt tcatccattc tggcaagtgc aacttcaagt cgcctgtcag
     1501 attcttcaag ttgctttata gattcctcct tcttgtcgtc aaagtatgaa agtccgacaa
     1561 tgtcttcaat aaccttcctt ctctcttcgg aattaagttc agagattctt gttatcatcc
     1621 cttgctggac aatgttaagt ttattcggaa ccgcaaccat aatttctaat aattccagaa
     1681 tagtgttctt tgataccttt ttaccattaa gataatattg actctctccg gtttgacctt
     1741 ccatttctcg actcatggaa accgtatcca tatcaatagg gattccccta tcggaattat
     1801 cgaaactaag atttactcgt actagcctat gcgaagaatt ttcactatca tgaaatagcg
     1861 attgaaactt gtcaacacgt aataatttag ggctattttc tcccaatgcg aacatgattg
     1921 catccaggat gttactctta ccggagccgt taggtccagt aacagcaaca agaccattgt
     1981 ttaaatgtaa tacagtattc ttaaagccaa atgacttgaa accatagatt tcaagtttct
     2041 ttatatatac caaataccct gttatcagat tctcatggtt gtaaatatat tctatttgac
     2101 aaaatagtta gatctaaatt gatatttttt tagacaataa agagatgtat gtggttgata
     2161 atagtataat gggctattag cgctctcttt ttccttcaac aaactccatg aatgagttct
     2221 ttgcatccag atatggtttc tgaactggag ggtgcttaaa gcagtatgca gatacactat
     2281 caagttggcc tgtaatcccc ctatctatag ctattttggt tcctctaatt gcgtcaatca
     2341 taacgcctgc gctattatag gcatcaacaa cttttagttt gacgtctacc tctattggca
     2401 ctctaccaaa atatttgcca cgcatggaga tatagcatac cttgtcgttt gctaagaatc
     2461 caacaaagtc tgatggtcca attcgcatgg gcacttcgta tggagccatg gccgccaccg
     2521 cgctagtttt actaattctc ttatcttcga gacgttcttc atcaagcatg ttatagaaat
     2581 ccatatctcc gccaacattg agttggtaag tttcgtctac cttcacaccc ctatctacaa
     2641 agagtttaac aagtgtcttg tgtaataccg tggctcccaa ttgactcatg acatcatcac
     2701 ctgcacagag gagattctta tccgagaaag cctgctgcca tttcggggta gatgcaataa
     2761 agactggtat tgcattgata aacgacacac cagcatccag gcattgctct acgtagtatt
     2821 tggttgcctc tctgcttcct acaggaagat aatttactag tatttcagct ccgctttcct
     2881 tcaatacttt tgagacatcg gccggagaac tatcggatat ctttactctt tcattaagtc
     2941 gcttacccac accatcaagt acctttccct tttgaacttt aataccagtt gaaggtacat
     3001 ctgctatctt tatcgtgtta ttaggacttg caaatattgc ctctgataga tcgtggccga
     3061 cctttgattc gacaacatca aa
//
LOCUS       DASUMD010000158         2074 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_822669, whole genome shotgun sequence.
ACCESSION   DASUMD010000158 DASUMD010000000
VERSION     DASUMD010000158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2074)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2074)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2074
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_822669"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..992)
                     /locus_tag="VFX26_04505"
     CDS             complement(<1..992)
                     /locus_tag="VFX26_04505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573770.1"
                     /translation="MAPTTRVIFGKRNAIDTELGIFKKASNSIDTCMTYTRPSLAVSI
                     KQIKDAFLSAKSRGVRLRYITEINHHNFEDCKVLLSIVHELRHLDGVKTNFMISEGEY
                     LAPLIQEKSEAIASEHIYSDMIQIVEHGHCIFDTLWSKSISAEERITQLQNGAVPPET
                     KIMDNQDEIMKQIIHLSEVSSGLSVVSNHGGLQLTYNSFLELCKKVLEKQKRGEGEGI
                     RWIMRIEKDSVKLVKEFLKLGVKIRHVKNLGPINFTVSKYGLIATVEEMTGGGMIQNL
                     LTSNEGSYIKHFSSMFEQLWKEGVDARYRIKDIEEKVGIAEIEIIRNPVDSISRG"
     gene            complement(1028..>2074)
                     /locus_tag="VFX26_04510"
     CDS             complement(1028..>2074)
                     /locus_tag="VFX26_04510"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX5573771.1"
                     /translation="NKSESYCISIIDIVGSTQITSKLYNSGKIKKFYTVFINEIADIV
                     KHHDGKILKTVGDGVIFFFPQTSTVENFDGFKQALECLLKMVSSRDIINAKLHNELLP
                     DISYRISADYGKLEIAMSGEISSSYDLFGPTINFCAKINKKAPPNGIAIGADLWRIVN
                     SFPRFGKHYHFQEIKELSWKENKYSYPVYMLRPSTEIHIPRKQILSVRNDSKYELDSI
                     PKVLTVMLIDDDPSISFLFTQYLRSAGMIVDSFSDPEKALAHFVESDYRHYDLVITDI
                     RMTQLNGFELYQQLKTLDPNIQILFVTALDIAQEITTLLPEVKLNQFLIKPVNPSVLI
                     NSVKQHAKRYIEGA"
BASE COUNT          584 a          409 c          349 g          732 t
ORIGIN      
        1 ccgcgggata tggaatctac tggattccga attatttcaa tctctgctat gccaaccttt
       61 tcttctatat ccttaattcg atatcgtgca tctactccct ctttccatag ctgttcaaac
      121 atggaagaaa agtgttttat atacgatcct tcgttactgg ttaagagatt ctggatcatt
      181 cctcctccag tcatttcttc gactgtagca ataagtccat atttactaac tgtaaaattg
      241 ataggcccta gattcttaac atgtcttatt ttaactccta gtttcagaaa ttccttgacc
      301 agtttaacac tgtctttttc aattctcata atccatctaa taccttcccc ttctcctctt
      361 ttctgttttt ccaggacttt tttgcatagt tccaaaaagc tgttgtaagt taattgcaac
      421 ccaccatggt ttgatacaac tgacaagcca gaagagacct cagataaatg aatgatctgt
      481 ttcataatct catcctgatt atccattatc tttgtctccg ggggaaccgc tccgttttgt
      541 aattgcgtta ttctttcttc tgctgaaatt gatttactcc atagagtatc aaatatacag
      601 tgtccatgtt ctacaatttg aatcatgtca ctgtaaatat gctctgacgc tatggcttca
      661 cttttttcct gaatcaatgg agcaagatat tctccctcgc tgatcataaa gttagtcttg
      721 acgccatcta ggtgtcttag ctcatgtaca atacttagca acaccttaca atcttcaaag
      781 ttatgatgat tgatttcggt gatatatcta agcctcaccc ctctgctctt agctgacaaa
      841 aatgcatctt tgatttgttt tatggagaca gcaagtgatg gtctggtata agtcatgcaa
      901 gtgtcaatgc tattacttgc tttcttgaaa atacctaatt cagtatctat agcattgcgc
      961 tttccaaaaa taactcgggt tgtaggagcc aacttttgta tccaacttcc ttgttcaata
     1021 gctatagcta tgctccctca atataccttt tagcatgttg tttgacacta ttaattagca
     1081 cgcttgggtt taccggcttg ataagaaatt ggtttagctt tacctcaggt aataacgtag
     1141 ttatttcttg agcgatatca agtgcggtga caaataatat ttgaatattt ggatcaagag
     1201 tctttaattg ctgatacaat tcaaatccat tcaattgagt catccgaata tctgtaatca
     1261 ctagatcata gtgacgataa tctgattcta cgaaatgcgc aagggccttc tcaggatcac
     1321 taaatgagtc gacaatcatt cccgctgatc taagatattg tgtgaataga aatgagatag
     1381 atggatcatc gtctattagc attaccgtta gcactttggg tatagaatca agctcatact
     1441 tagaatcatt tctaactgac aatatttgct ttctagggat gtgaatttct gtagagggcc
     1501 ttagcatgta gacaggatat gaatatttgt tctctttcca agatagttcc tttatttctt
     1561 gaaagtggta gtgtttgcca aatcttggaa aagaatttac tattctccac aaatcagctc
     1621 ctatggctat tccatttggc ggtgcttttt tattaatctt ggcacaaaag tttatggtcg
     1681 gaccaaagag atcatacgag gaggatattt cacctgacat cgcaatttcc aatttaccat
     1741 agtctgcact gattctataa gagatatccg gaagcaattc attatgaagt ttagcgttta
     1801 tgatatctcg agatgaaacc attttaagta aacactctaa tgcctgtttg aatccatcaa
     1861 aattttctac agttgaggtt tgaggaaaga agaatattac tccatcgcct accgtcttta
     1921 atatttttcc atcatgatgt ttgacaatat ccgcgatttc attgataaag accgtataga
     1981 atttcttgat tttccccgag ttgtatagtt tggatgtaat ctgagtggaa ccaactatgt
     2041 ctattattga aatgcaataa gactctgact tgtt
//
LOCUS       DASUMD010000159         2795 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1487619, whole genome shotgun sequence.
ACCESSION   DASUMD010000159 DASUMD010000000
VERSION     DASUMD010000159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2795)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2795)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2795
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1487619"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..506)
                     /locus_tag="VFX26_04515"
     CDS             complement(<1..506)
                     /locus_tag="VFX26_04515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573772.1"
                     /translation="MSNNNDICFLNLEAVDAIEQVSTEIYYVVLGTTRVIKKIHKSLT
                     FTRKQLTEISNVLLLLALILIVTVSSITTLNALESPDKGAYTDNIRFIQYLDGNTALR
                     EIRSGNLDTYYFRMPLETVASISNDSNVKIYEKNAGSFSFLLNPAPSKNPNILNPFQF
                     KEIRFAVN"
     gene            454..1506
                     /locus_tag="VFX26_04520"
     CDS             454..1506
                     /locus_tag="VFX26_04520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573773.1"
                     /translation="MASTASRFRKQISLLLDNGLISKELYHHFINRGLKVISPSNDFG
                     LDYLGEIIPEIVIGASSDYVSKMKVPYQATSYVAARTGKSGKGIYIYKIIDRPGGGVL
                     SLTGGIRKLGDSIFASTHRILLGTKAMMISADNLVVNKEQIWNWQFFGNAIKESNPNI
                     YEDLTKLRDKIGTKSTFHQIVVARSDKTFRRLKFANLCQKNQIRILDPKNGIKVVFLT
                     NESGYEHALRFLPESDLIHYVITGKEFDMYLAMVQIRRSYGIDMILNDGGRIMSNSVR
                     DLGLLGEERVTLEPYPGDQFVPQRDRIDSKNVLGIEGTGIDGGEIKNAIKVHSTRIRD
                     ELANVYLYPLDEKLCT"
     gene            complement(1571..2707)
                     /locus_tag="VFX26_04525"
     CDS             complement(1571..2707)
                     /locus_tag="VFX26_04525"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEX5573774.1"
                     /translation="MTINRIYDQLSTIRNMPVEGLMEPSIIISKDEPLSKIISTLIET
                     GSYDVFIELSGKVAALNIRDIIGAKDIKTTRPSLVGKIIPELNRKSVVGEAARIMSHY
                     RMRTIPVVHNGRVEGQISAKRIVDSINKQLVGNKLKINASNIMTGDPLVIDSHKSVSA
                     AMSIMKRRRIDHLPVVDNGLLVGIITSSDIMKVMSPTERIGKKSIGINNAEDRLSVEV
                     SGLANDDVITANVDDSLRGVCDRMISAGSSYCIIKVWDEIQGIITYRDIVALLGEKIE
                     EDIPMFIVGLPDEPLDAELAKSKFANITKFMRKIHPDIEQARCHIKLRRVLGSRKRYE
                     IDVHVRSTHGNISYTNVGWDLAKLFDEMNHALKKRVAHKSKKSL"
BASE COUNT          865 a          518 c          511 g          901 t
ORIGIN      
        1 taatttactg caaaacgaat ttctttgaat tggaatggat tcaaaatgtt tggattcttt
       61 gatggtgcag gatttaaaag gaaggagaat gaacctgcat ttttttcgta tattttcaca
      121 ttactatcat ttgaaataga tgctactgtt tctaaaggca ttctaaagta gtacgtgtca
      181 agattccctg atctaatttc gcgtagagct gtatttccgt ccagatattg aatgaatcgt
      241 atgttgtcgg tatatgcacc cttatctggt gactcaagtg cattgagagt ggtaatcgag
      301 gaaacagtta ctatcaagat taaagctaaa aggagtagaa catttgaaat ttctgtcaat
      361 tgttttctgg taaaggtaag agatttatga attttcttaa ttactctagt tgttcctaaa
      421 acaacataat atatctccgt gctaacttgt tctatggcat ctaccgcctc aagatttagg
      481 aaacaaatat cattattatt agacaatgga ctaatctcaa aagaactcta tcatcatttt
      541 attaaccgag gcttaaaggt tatatcacct tcaaatgact ttggactcga ttatctgggt
      601 gaaattatac cagagatagt aatcggtgct tcttctgact atgtcagtaa gatgaaggtg
      661 ccgtatcaag ccacaagtta tgttgcagca aggacaggga aaagtggaaa aggcatttac
      721 atttacaaga ttatcgatag gcccggtggg ggtgttcttt ctctaaccgg aggcattaga
      781 aaattgggag atagcatctt tgcatcgact catagaatct tgttgggtac aaaagctatg
      841 atgatttctg cagacaatct tgttgtcaac aaagaacaga tttggaattg gcaatttttt
      901 ggaaatgcta taaaagaatc aaacccaaat atctacgagg accttacaaa gctaagagat
      961 aaaataggta caaaatcaac attccatcaa attgttgtgg ccagatctga caaaacattt
     1021 cgtagactca aatttgccaa tctctgtcag aaaaatcaga taagaattct tgatcctaaa
     1081 aatggaatca aagtcgtctt cttgacaaac gaatcaggat atgagcacgc tttaaggttc
     1141 cttcccgaat cagatctaat tcattatgtc ataacaggta aagaatttga catgtattta
     1201 gccatggttc aaatcaggcg gtcatatggt atcgacatga ttctgaatga tggaggacgt
     1261 attatgtcga actctgtccg cgatctaggg ttgttaggag aagagagagt tacgcttgaa
     1321 ccctatccag gagatcaatt cgtccctcaa cgtgatagaa tcgattcaaa aaatgtactt
     1381 ggaatagaag gaacaggaat tgatggagga gagattaaaa acgcaataaa ggtccactca
     1441 acaagaatta gagatgagtt ggccaatgtt tatctatacc cgttggatga aaaattgtgt
     1501 acttaattca atatacgaca gttactgacg agaggcttga ttatccttca ttgcgtcaca
     1561 tacaaagaaa ttaaagactt tttttacttt tgtgggcaac cctttttttc agagcgtgat
     1621 tcatttcatc aaaaagcttt gccaaatccc acccgacgtt ggtataagaa atgttaccat
     1681 gagtggatct aacgtggaca tcaatttcgt atctctttct tgatcccaag acccttctta
     1741 atttaatatg gcaacgagct tgttctatat caggatgaat ttttcgcatg aatttggtaa
     1801 tatttgcaaa tttggatttt gcaagctctg catcaagtgg ttcatcaggc agaccaacaa
     1861 taaacattgg aatatcttcc tctatttttt ctcccaataa tgcaacaatg tccctataag
     1921 taataattcc ttggatttca tcccatactt taattataca gtagctggaa cccgcactta
     1981 tcattctatc acagacaccc cggagactgt cgtctacgtt tgcagttatt acatcatcgt
     2041 ttgccaaacc agagacttca acggaaagtc tatcctcagc gttgtttata cctattgact
     2101 ttttacctat ccgctcagta ggggacatta ccttcatgat atcagatgac gttatgatac
     2161 caactaagag accgttatca actacaggca gatgatcaat tcttcttctt ttcataatgg
     2221 acatggctgc ggatacactt ttgtgagaat ctataaccag gggatcacct gtcataatgt
     2281 tagatgcatt gatttttagt ttatttccta ccagttgttt atttatcgaa tcaacaattc
     2341 gcttagctga aatttggccc tcgacccgtc cattgtgaac tacaggtatg gttctcatcc
     2401 tgtaatgact cattattctt gccgcttcgc caaccacact ttttctattc aattctggaa
     2461 ttatttttcc aactaaagat ggtcttgttg ttttgatatc tttggctcct ataatatccc
     2521 taatattcaa ggctgctact tttcctgata actctatgaa aacgtcgtaa gaaccagttt
     2581 caattaaagt actgataatt tttgataacg gttcatcctt agatattata atcgagggct
     2641 ccatcagccc ttcaacaggc atattgcgaa tcgtgctaag ttgatcataa attctgttga
     2701 ttgtcaacct caatgactat aagtccttgg acattaaagg ttttattcag ctatgatgca
     2761 gtctgatgtt atacacctta tcacaacaaa tcaga
//
LOCUS       DASUMD010000160         2530 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_602411, whole genome shotgun sequence.
ACCESSION   DASUMD010000160 DASUMD010000000
VERSION     DASUMD010000160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2530
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_602411"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1896)
                     /locus_tag="VFX26_04530"
     CDS             complement(<1..1896)
                     /locus_tag="VFX26_04530"
                     /inference="COORDINATES: protein motif:HMM:NF024867.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMC family ATPase"
                     /protein_id="HEX5573775.1"
                     /translation="MIIKKIEITNIRSYKDKTTIELPVGRILFQGDIGSGKSTILSAI
                     EFALFGLGDIDANHLLRIGESKGSVLLEFESCGKTYNVFRSLLKRGNKIFQEEGFLYE
                     NGIKSSYSVGELKSKILDIIGINERTQTKTTSTIYRFAIYTPQEMMKNVLTSNSEKRV
                     EILRRAFGIEEYSTAKKNAEKFSSWIRTVTRIKRSLLNDLSIYRADKQKIDGTIESLK
                     EEIDYLKDTIVTLDDHIQLILKEMLETRKRKERILQAESSILHLKSTIDKNLKLKEET
                     NLELDRINRELTDISQSEKIVADLTPKYHDYIQKREELVDVTEQAMQYDKLLLDKIKL
                     ESNINSDREMLNSNIKSLDSELSELSLEREMCNKEIKNLNHLEEEEILLSNNITDSGN
                     FEMELEGVSDNLSNIKSEMISINNEISKQQSELDTVLQLRQDAVCPYCKQKLDRQHIL
                     ELENKFLQRKDFMENKLGQKEKELQENQDKKNEFLSRIKQVESKKSELQKIRVQIAKL
                     NVVENNIKLLDLKIGEKTSSKRSMQAKLQDDYFLEKVKKLHEIADKLTTLYSSRMSYD
                     SLTKIVNDYQKTDLESTYVEHSNLMKSKQRNIEEKRVKEKSLVGLSDEISALSKKLNE
                     MKAVYQDS"
     gene            2201..>2530
                     /locus_tag="VFX26_04535"
     CDS             2201..>2530
                     /locus_tag="VFX26_04535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573776.1"
                     /translation="MNILAFILVGTIAFSLGVPYPMMSLAQEEEQTGGQSPEQIEIPL
                     NFTLKAQGGDDEELNATEAKEVTVTLSVQGAKDGSPMQIPVTAKVANDTQTQDLELCT
                     TLQGGEEM"
BASE COUNT          751 a          441 c          378 g          960 t
ORIGIN      
        1 actatcttga tagactgctt tcatttcgtt aagtttctta gatagggcag atatctcatc
       61 acttaatccc actaatgatt tttctttaac tcttttttct tcaatgttac gttgttttga
      121 tttcatcaag ttagagtgtt caacatatgt actttcaaga tctgtctttt ggtaatcgtt
      181 tacgatttta gttaatgagt cataactcat cctagaggaa tacaatgtag ttaatttgtc
      241 agctatttca tgcaatttct ttaccttttc aagaaaatag tcatcttgta atttggcttg
      301 catcgatctc ttgcttgaag ttttttcgcc tatcttaaga tctagtagtt taatgttgtt
      361 ctctacaaca tttaattttg ctatctggac tcgaattttt tgtaattcag atttcttaga
      421 ctctacttgt ttgatcctac ttagaaactc atttttctta tcttgattct cttgtagctc
      481 tttttccttt tgaccaagtt tattctccat gaaatccttc ctttgtaaaa atttattttc
      541 caattctaaa atgtgttgtc ggtctaattt ttgcttgcaa tacggacaaa ctgcatcttg
      601 tcttaactgt aatactgtgt caagttctga ttgctgtttt gatatttcat tattaattga
      661 aatcatctct gacttaatat tagagagatt atcagaaaca ccctccaatt ccatttcgaa
      721 attacctgaa tcagtaatgt tattacttag tagaatctct tcttcttcca agtgatttaa
      781 attctttatt tctttgttgc acatttctct ttccaacgaa agttcagata attccgagtc
      841 taaacttttg atattagagt ttaacatttc acggtcactg ttaatgttac tttctaattt
      901 tatcttgtcg agtaatagtt tatcatattg catagcttgt tcagtaacat ctactaattc
      961 ctcccttttt tgaatatagt catgatattt cggagtaaga tcagcaacta ttttttcact
     1021 ttgcgatata tcagttaatt cacggtttat tctatcaagc tctaaattcg tttcttcttt
     1081 tagtttcaaa ttcttgtcta ttgtagattt gagatgtaaa atcgaagact ctgcttgtag
     1141 tattctttcc tttcttttcc tcgtttccag catttccttc aagatcaact gaatatgatc
     1201 atcaagagtg actatggtat ctttaaggta gtcaatttct tcctttaatg attctatggt
     1261 accatctatc ttctgtttat ctgccctgta aatactcaaa tcattcagca aagacctctt
     1321 tatcctggtg accgtgcgta tccaagaaga aaatttctca gcattttttt ttgccgtgct
     1381 atattcttct ataccaaatg ctcttctcag tatttcgacc cttttttcac tattggacgt
     1441 caatacattt ttcatcatct cttggggagt gtaaattgca aaacgatata tcgttgaagt
     1501 tgttttagtc tgtgttcttt catttattcc aattatgtct agaatttttg attttaattc
     1561 accaactgag tatgaacttt tgatgccgtt ttcatacaag aaaccttctt cttgaaaaat
     1621 tttatttcct ctttttaaga gggatctaaa gacattatag gtcttgccac aactttcaaa
     1681 ttctaatagt acagacccct tactctcccc aattctgagt aaatgatttg catcaatatc
     1741 acccagacca aaaagggcaa attcaattgc agaaaggatt gttgattttc ctgaaccaat
     1801 gtcaccttga aatagtattc tcccaacagg aagttcaatg gttgttttat ctttgtagct
     1861 tctgatatta gtaatttcga tttttttaat tatcataaga taatctttat ggatgtatta
     1921 acaatacaga agaaataaaa gattattgat cttttcgacg acatgaccca aatatggaaa
     1981 tatctagttt aaattaaaca aaaaagtagg cagagtttta acgaaattaa ttagtatctt
     2041 aaaattgatt gtggatatcc gttgaaagca tcaataagca ctttttaaca attgatataa
     2101 aggatttaag acataaattt aaacatatat acataattta ttcaaaagta gagcaatttg
     2161 cattaactat tataagtttt aaagtcctaa ttgaatctta atgaatatac tagcatttat
     2221 tttggtagga acaattgctt tttcattggg tgtgccttac ccaatgatga gtctagcgca
     2281 agaagaagaa caaactgggg gacagtctcc agaacaaata gagatacctc tgaatttcac
     2341 cctaaaagct cagggcggcg atgacgaaga gttgaatgca acagaagcaa aggaagttac
     2401 tgtaacccta agcgtacaag gtgccaagga tggaagtccg atgcagatac cagtaacagc
     2461 aaaagtagca aatgataccc aaacacagga cctagaactt tgtacgactt tgcaaggagg
     2521 ggaggaaatg
//
LOCUS       DASUMD010000161         2084 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_49967, whole genome shotgun sequence.
ACCESSION   DASUMD010000161 DASUMD010000000
VERSION     DASUMD010000161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2084)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2084)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2084
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_49967"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            101..1579
                     /locus_tag="VFX26_04540"
     CDS             101..1579
                     /locus_tag="VFX26_04540"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX5573777.1"
                     /translation="MFKKENNNHSIWTTLAILSSIATISMYTETMLLPALPQLIDEFD
                     LSYNNSSWILSAYLVAGAVMTPVSGKLSDIYGKKKIMIILISIYTIGLIISPFSSNFF
                     MLLMSRILQGIGISVFPVTFGLVREHFPREKLAISQGIISSMFAGGSVLGLAIGGTIV
                     QFYGWRLTFFSIIPIAICLIIIIVRFIPTEKKATKGSNIKNEDSYEKFDLWGSILLGV
                     SIITFLLFITFLKTDSFDTSDKLLNSISVPITSLFCLTVFILSFVAFLLFERKTKFPL
                     IASSLFLDRRILSSNIILLIVGMSMFTIFQTLPILAQSPYPVGFNNNAIQMSLVQLPF
                     ALVLLILGPLAGLIITRIGQTIPLVIGTLAMALGFSLLLLMRFNEFYISIYLVVISVG
                     LSLTNVSSTNIVMVQSSFQQIGISLGISNLLRIIGSSIGPTIAGVFMQTHLFLVTLSK
                     NQYQYFPSATAYDLIFGTMLLLSLSALGISFYLIRKQPLTRL"
     gene            complement(1586..2041)
                     /locus_tag="VFX26_04545"
     CDS             complement(1586..2041)
                     /locus_tag="VFX26_04545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573778.1"
                     /translation="MKQFYNEFEVNSNIEKVWVFYTDLKHLEIISPSDIKLHLIESTD
                     KILKKGTVACFYGQIIISAQWCSRITFFEKYEYVDEMIQNGSKKPPFRLWSHRHRFKE
                     IDDCKTRVLDKIEFELPFGLMGKLLESYIELKLLKIFEHREHATKQFLE"
BASE COUNT          621 a          363 c          332 g          768 t
ORIGIN      
        1 gatagggatg aacaaatagc atactttaag gggggcatag caccgtgtaa aatttattat
       61 attgatcttt gagttttatt ataatcaaaa aagataaccc ttgtttaaaa aagaaaataa
      121 caatcattcg atatggacga cccttgcaat tctaagttct attgctacca tatcaatgta
      181 tacagaaacg atgcttcttc ctgcacttcc tcaattgatt gatgaatttg atttatcata
      241 taataattca tcctggatat taagtgcata ccttgttgca ggtgcagtta tgacgccggt
      301 cagtggaaaa ttatctgata tttatgggaa gaaaaagatc atgataattc tcatttcaat
      361 ttatactatt ggtcttatca tttcgccttt ctcttctaat tttttcatgt tactaatgtc
      421 aagaattttg cagggaattg gaatttcagt cttccctgtt actttcggac ttgtcagaga
      481 acattttcct agagaaaaac tagccataag tcaaggaatc ataagctcca tgtttgcagg
      541 tggttcagta cttggacttg caataggcgg gactattgtg caattttatg gttggcgatt
      601 gacatttttt tccattattc caattgccat atgtctaata atcatcattg tgagattcat
      661 tccaacggaa aagaaagcaa ctaaaggttc caatattaaa aatgaggact cgtatgaaaa
      721 atttgaccta tggggttcga tattgttagg ggtaagcatt atcacatttc ttttattcat
      781 aacatttctt aagacagata gttttgatac tagcgataaa ctattaaatt ccatcagtgt
      841 tccaataaca tctttatttt gcttgacagt tttcatttta agctttgttg cttttttgct
      901 gtttgaaaga aaaactaaat tcccacttat cgcctcaagc ctctttctcg acaggaggat
      961 attgtcttca aacatcattt tactgattgt aggtatgtcg atgtttacca tatttcagac
     1021 attacctata ctggctcaaa gtccgtatcc cgtgggtttt aataataatg caatacagat
     1081 gtcattagta cagttgccat ttgcacttgt tctcttgatt ttgggtcccc tagctggcct
     1141 aataataaca agaattggac agacaattcc attagtgatt ggtacccttg ccatggcatt
     1201 gggattttca ttgcttttgc tgatgagatt caatgagttt tatatatcga tctatttggt
     1261 agtaatatct gttgggctgt ctttaacaaa tgtcagtagt actaatattg tcatggtgca
     1321 aagttcattc caacaaatag gtatctcact tgggattagc aatctattga gaatcatagg
     1381 gagttcaatt ggtccaacaa ttgctggagt attcatgcag acccatttat ttctagttac
     1441 tctatccaag aatcaatatc aatattttcc atctgccacg gcatatgatt tgatttttgg
     1501 tactatgttg ttgctttcat tatccgcatt aggtatctca ttttatctaa ttagaaagca
     1561 accgttgact cggctataaa taagttcatt caagaaattg ttttgtcgca tgttctctat
     1621 gttcgaaaat cttgagaagc ttaagttcga tatacgattc taacaatttt cccatgagtc
     1681 caaagggcaa ctcaaactca atcttgtcta atactctagt tttacaatca tcaatttcct
     1741 tgaatctgtg cctgtgagac catagtcgga atggaggttt tttacttcca ttttgaatca
     1801 tttcatccac atattcatat ttttcaaaaa aagttattct agaacaccat tgagcactta
     1861 ttattatctg tccataaaaa caggctactg ttcccttctt caatatttta tctgtacttt
     1921 ctatcaaatg taattttata tcactcggac taattatctc aagatgtttt aagtctgtat
     1981 aaaataccca gactttttcg atattagaat ttacttcaaa ttcattataa aactgtttca
     2041 tactaaattc ttgtcaacct tgatatttta cttgattcat atat
//
LOCUS       DASUMD010000162         6428 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1156012, whole genome shotgun sequence.
ACCESSION   DASUMD010000162 DASUMD010000000
VERSION     DASUMD010000162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6428)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6428)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6428
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1156012"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..533)
                     /locus_tag="VFX26_04550"
     CDS             complement(<1..533)
                     /locus_tag="VFX26_04550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HEX5573779.1"
                     /translation="MDVESRIGLVLREPTEEVVEMQELRKIFETNAKPRHYIGLEISG
                     KLHLGSLILTGYKINDFIEAGIYSNVFLADWHTYINNKLDNDWQKIIEVSKYYAEAFK
                     FFCPGVNIILGSTLYDNYDDYWKNFMIFSKHMTLSRTLRALTIMGRSEKEKLDFSQLM
                     YPSMQSADIKALDLDIV"
     gene            643..798
                     /locus_tag="VFX26_04555"
     CDS             643..798
                     /locus_tag="VFX26_04555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573780.1"
                     /translation="MNIKDLFGGEIVGTGSDFIVILKGKNRILLQFSSHKIIVLKKEA
                     TPYGSSI"
     gene            877..2796
                     /locus_tag="VFX26_04560"
     CDS             877..2796
                     /locus_tag="VFX26_04560"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF003218.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase VI subunit B"
                     /protein_id="HEX5573781.1"
                     /translation="MTSKVTTEVLEKGTKQTKTILQIPQKQKSKIYYNRKAESEFFVD
                     NSALAGFTGERILYMSVRELIENSLDSCEINHILPVIRISLKLLDPLNDLWIISCQDN
                     GIGIPSEKVPVAVCSFLTSGKYVEKQQRGLFGVGLKMIAAFSTKDTDHPLKVWSKSEE
                     ESEYYFDLRTDIGTNKPITLFKKSVKNDESQIEGESGFKVEAILRAKLSPVTKNKIYD
                     YISQTSIVNPYAIIIFETDEGKVTFKRRTQIMPNPSREVLPHPSDMDLKTLKKAIFNF
                     MNQKTTLQGILSNSFQKMSNDKAKDIINRAGLTVKPADQYDEHELIKVVNICKHTKFQ
                     SPNTDHLSPIGEKILTVGMTSEYSIILNKETSTSGSQTHLSAKILKPSLTSYSSRICV
                     VNNRPTIVECGIAYGGDIPSFKLYRFANKIPLLYDEGSDVAREVISEVGINKMGISKK
                     EVKEQFSNVETRSDRTVEYLPIHIFFHICSTKIPYKTAGKESIASEGDLKKYMKSCLS
                     DLYRKVSAQIRRELKIKEDENKLRLYKHYIPFIVNAISESIKIDSKKLSKAFQNLAEK
                     YVGGELSNIAKQIFPDSDQKRVEPGNKKNTVNNDNGNENKLSKFDTRSRVSVSKQSNK
                     IKPAKINIPRKITKK"
     gene            2810..3916
                     /locus_tag="VFX26_04565"
     CDS             2810..3916
                     /locus_tag="VFX26_04565"
                     /inference="COORDINATES: protein motif:HMM:NF044723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573782.1"
                     /translation="MALKDKRHQEITNRIRKIMKNVGDDILVEGIMPSLEIPKVGYDN
                     TVWSDEKRMLTIGEKTVQVGPNSSKKIPTFAQYLVMANAIRKLLDEEMESTIRGMYYA
                     TLSTVGDENNQQKFWNGQDDSDDAIKAIELLTNVPREEFSVTSKPKGMISGPITLSVG
                     GDLIDCNLGSRATSQLIPTNIRDLEIVKVKADFVMVVEKDTVLNNIRKSGFIQKYNAI
                     LLTGSGEPDRATRMMVKMLNEKWKMPVVIFADADPWGLGIALRYKIGSESLSYDSDRL
                     VTPNSKVLGMMFSDIYEYNIPKVARLAATPEDLNRANDMKKKPWLQDKRWKKELNLFL
                     ERKEKCELDAFFKYGFKYLADTYLPNKLREAGVI"
     gene            complement(3964..5454)
                     /locus_tag="VFX26_04570"
     CDS             complement(3964..5454)
                     /locus_tag="VFX26_04570"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose synthase family protein"
                     /protein_id="HEX5573783.1"
                     /translation="MTVYTLNFNYLSYRSTRNSVNNKIRKKINYSAETCPRVTIQLPI
                     YNEKYVATRLINAICSMDFPKERMDIQVLDDSDDETSSIIEALVEKYKNNGFNISAFH
                     RVNRTGYKAGALKEGLKYAKGEFIAIFDADFIPSSDFLRKALCHFDDSNIGLVQGRWG
                     HINEKYSILTKAQAVSLDFHFFIEQKAKSLTHLFMNFNGTAGIWRTLCIKDAGGWHTS
                     TLVEDLDLSFRAQMKGWKCIFDEDLVVNAELPVQMNAAKRQQFRWAKGSVQVAKKLLI
                     MLLSHRKLSIDTKIQIFIQLTKHIINPLFLIQFLIFPILLLLNYQIYDTAWAPALGIV
                     AYLLLGPATYLIMIRKIWGENWRTKALHYLFMIFYAGGISINNSVAIFDALVGKRNEF
                     LRTPKFGIMEKNQDWRNNKYALPFTKTTLLEIFFSAYGCFTIAICLLSGNPILVPLIS
                     IQTIGFIYVAYLSIIQSRNIRNKTSLYLGPSTEYNLQDVRANDPLT"
     gene            complement(5580..>6428)
                     /locus_tag="VFX26_04575"
     CDS             complement(5580..>6428)
                     /locus_tag="VFX26_04575"
                     /inference="COORDINATES: protein motif:HMM:NF024634.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEX5573784.1"
                     /translation="DSYADRIYVTDRWTETGTDAITQKDVEADLEITVEIVSGDVVDI
                     IYQIKPLEYFGDHYWIKNYRQKTDTKAKIIIDTIIWNSKIGDKLIDHYKKSQKLSAED
                     ALKKLDELTPLKKKPISRDPSVAQDVKSPERSSQPQVQVNAPSVTPPPQAPPAMTGGD
                     TTISLVGTGNSYSKIDGPIDPEFKSKRQVKGSYQGIKVWGPVDPPGQLGIWGTEVTVD
                     FDICVADGACIEACPVNVYEWLDTPGHPASEKKPFMIREKDCIFCMACENVCPPQCVK
                     IFQKGQ"
BASE COUNT         2178 a         1119 c         1182 g         1949 t
ORIGIN      
        1 tgaacgatat ccaaatctaa tgccttgata tctgctgatt gcattgaagg gtacatcaat
       61 tgggagaaat caagtttctc cttttctgac ctacccataa tagttaatgc tcttaaggtt
      121 cgtgacaacg tcatatgttt actaaagatc ataaaattct tccaataatc atcataatta
      181 tcatacaaag ttgatcctaa aatgatattg actcctggac aaaaaaattt gaaggcctca
      241 gcatagtatt tggagacctc aattattttt tgccaatcat tatctaactt attatttatg
      301 taagtgtgcc agtctgcaag aaacacatta ctatatatgc ctgcctcgat gaaatcattt
      361 atcttgtaac cggtcaaaat tagacttccc aaatgaagtt tcccagaaat ttctaaacca
      421 atgtaatgac gaggtttggc attagtttca aatattttcc ttaattcttg catctcaaca
      481 acttcttcag taggttctcg taatacaagg ccaattctgc tttcaacatc cataaactag
      541 gtaaaaatgt aagtgggaat tattattttt acctccataa acacagtgga aactgagtaa
      601 aatgtctcaa tattaataag tgatagaact gcatatggta agatgaacat taaagatctt
      661 ttcggtggtg aaatagtcgg tacgggatct gattttatag tgattcttaa aggtaaaaac
      721 aggatattgt tacaattcag ctctcataaa ataatagtac tgaaaaaaga ggcaactcct
      781 tatgggtctt caatataagg atgttttatc cattttcaca acaatctcac tatttttgat
      841 aaaaagttaa atctagtaac gtacaaactt ggtcaattga catcaaaagt tacaactgaa
      901 gtcttagaga aaggaacaaa acagaccaaa actattttgc aaatccctca aaaacaaaaa
      961 tcaaaaatct attataatag aaaagcagaa tcagaatttt ttgtcgataa ttctgcattg
     1021 gcaggtttta ctggagaacg gattctgtat atgtcggtga gagagttgat agaaaattca
     1081 ttggattcct gcgaaattaa tcacatacta ccagttattc gtataagcct aaaactctta
     1141 gatccactta atgatctgtg gatcatatct tgtcaggata acggcattgg aataccttca
     1201 gagaaagttc ctgttgcagt ttgttcattc ttaacttctg gcaaatacgt cgagaagcaa
     1261 caaaggggtc tttttggagt tggattgaag atgatagcag cattttctac aaaggatacg
     1321 gatcatcctc tcaaagtatg gtccaaatca gaagaagaat cagaatatta ttttgatctc
     1381 aggacggata ttggaacaaa taaaccaatc actctcttta aaaagagtgt aaaaaatgat
     1441 gaatcgcaaa tagaaggtga atctggtttc aaagttgaag ctatattgcg tgcaaaatta
     1501 tcccctgtga ccaaaaacaa aatctatgac tatattagtc aaacaagcat tgttaatcca
     1561 tatgcgatca ttatatttga aacagatgaa ggaaaggtaa cgttcaaaag aagaacacag
     1621 ataatgccaa atccttcaag ggaagtattg ccacatccct ctgatatgga tcttaaaact
     1681 ctaaagaaag ccatttttaa ttttatgaat cagaagacaa ctctacaagg gatactctcc
     1741 aattcattcc aaaaaatgtc aaacgataag gctaaagata taattaatag agcaggattg
     1801 accgtaaaac ctgcagacca atatgacgaa cacgagttga ttaaggttgt aaatatttgc
     1861 aagcatacga aatttcagtc tccaaataca gaccatttga gtccaatagg ggaaaaaatc
     1921 ctgactgtcg gaatgacatc tgaatattca attattctaa ataaggagac atccacctct
     1981 ggaagtcaaa ctcatttgtc tgccaagata ttaaaaccat cattgacatc ttattcttca
     2041 agaatttgtg ttgtgaataa taggccgaca attgttgaat gtggaattgc ttacggaggg
     2101 gatattcctt cattcaaact gtatagattt gctaataaaa tcccacttct atacgatgaa
     2161 ggttctgatg ttgcacgaga agtaatttct gaagtaggaa taaacaagat ggggatttca
     2221 aaaaaagagg ttaaggaaca attttctaat gtagaaacaa gatccgatag aacagtagaa
     2281 tatcttccaa tccacatttt ctttcatata tgttccacaa agataccata taagactgca
     2341 ggaaaggaga gcattgcttc cgaaggcgat ctgaaaaagt atatgaaatc atgtctttca
     2401 gatctttata gaaaagtaag tgcacaaata agaagggaac tgaagataaa ggaggacgaa
     2461 aacaaattaa ggctctataa gcactatata cccttcatag taaatgcaat atcagaatca
     2521 attaaaattg actcaaaaaa actttccaaa gcatttcaaa acttggcaga gaaatatgtt
     2581 ggcggggaat tatcaaacat tgctaaacaa atctttccag attcggacca aaaaagagtt
     2641 gaaccaggca ataaaaagaa tacagtgaat aacgataatg ggaatgaaaa taagttgagt
     2701 aaatttgata cccgatctag agtatcagta tcaaaacaga gtaacaaaat taagccagct
     2761 aaaattaata ttcctcgtaa aattactaaa aaataaagtg taaaggatca tggcactaaa
     2821 agataagaga catcaagaaa taactaatag aatcaggaaa ataatgaaaa atgtcggaga
     2881 cgatattctt gttgaaggta ttatgccaag tcttgaaatt ccaaaagtgg gatatgataa
     2941 taccgtctgg tcagatgaga agaggatgct tactatagga gagaagacag ttcaggttgg
     3001 tcctaatagc tcaaagaaga taccaacttt tgcgcaatat ttggtcatgg caaatgccat
     3061 aagaaaattg ttagacgaag aaatggaaag taccataaga ggtatgtatt acgccacttt
     3121 aagcacggtt ggagatgaaa ataatcaaca aaaattctgg aacgggcagg atgactctga
     3181 tgatgcaata aaggcaattg aactcttgac aaatgttcct cgagaggaat tttctgtgac
     3241 ttccaaaccc aaaggaatga tttcaggacc aataacactt agtgtgggtg gagatctgat
     3301 tgattgcaat ctaggaagca gggctacgtc ccaactaata cctaccaaca tccgagatct
     3361 tgaaattgtg aaggtaaagg cggattttgt tatggtggtc gagaaagata cagtactcaa
     3421 taacataaga aaatcgggct tcatacaaaa atataatgcg atactattga caggatcggg
     3481 agaaccagat cgagcaacta gaatgatggt caagatgttg aatgaaaagt ggaaaatgcc
     3541 ggttgttatt tttgctgatg ccgatccgtg gggactgggt attgcactac gttacaaaat
     3601 aggaagtgaa tcattaagtt atgatagtga caggttggta acaccaaact caaaggtact
     3661 aggtatgatg ttttctgata tttatgaata taatatacca aaggttgcca gacttgcagc
     3721 tactccggag gatttaaaca gggcaaacga tatgaagaaa aaaccatggc ttcaggataa
     3781 acgttggaag aaggaattga atctatttct tgaacgaaaa gagaaatgtg aattggacgc
     3841 atttttcaaa tatggattca agtatttggc tgatacttat ttacccaata aattaagaga
     3901 agccggagtc atttaggcct gcatgtcaac tgactgcgta cgttagtcat tatacaaaca
     3961 atatcaagtc aacggatcat tagctcttac atcttgtaaa ttatattcag ttgatggtcc
     4021 caaatagaga cttgtcttgt tcctaatatt tctggattga attatgctga ggtacgctac
     4081 gtaaataaat cctattgttt gtatggaaat aagaggtaca agtatgggat ttccagataa
     4141 caaacatatg gcaattgtaa agcaaccata ggcgctaaaa aagatttcca acaaagtagt
     4201 ctttgtaaat ggtaaagcat atttgttatt acgccaatct tgattttttt ccattattcc
     4261 aaattttggt gttctcagga attcattcct ttttccaacc aaggcgtcaa atatggcgac
     4321 agaattgtta atggaaattc cacccgcata gaatatcatg aacaaatagt gaagtgcttt
     4381 tgttctccaa ttttcacccc agatttttct aatcattatc agatatgttg ccggtcctag
     4441 tagaagatat gcaacaatgc caagtgctgg agcccaagcg gtatcataaa tctgataatt
     4501 cagcagcaat aggatgggaa atatgaggaa ctgtatgagg aatagaggat taatgatgtg
     4561 cttggttagt tgaatgaata tctgaatttt agtatctata gaaagttttc tgtgagatag
     4621 taacattatc aaaagtttct ttgcaacctg tacggatcct tttgcccatc taaattgctg
     4681 acgctttgca gcattcattt gaacagggag ttccgcattg acaactagat cctcgtcaaa
     4741 gatacatttc cagcctttca tctgtgcacg gaaactcaaa tctagatctt caacaagcgt
     4801 gcttgtgtgc caaccccctg catcttttat acacaatgtt ctccaaattc cagctgttcc
     4861 attaaaattc atgaaaaggt gtgtgagact ctttgctttt tgctctatga aaaaatggaa
     4921 gtccaaagat actgcttgag cctttgtcaa aattgaatac ttttcattaa tgtggcccca
     4981 tcttccctga acaaggccaa tgttggaatc gtcaaaatga catagagcct ttcttagaaa
     5041 atcacttgaa ggaataaaat cagcgtcaaa tatggcaatg aattcaccct tggcatattt
     5101 tagtccttct ttaagggctc ctgctttata cccagttctg tttactctat gaaaagctga
     5161 tatgttgaat ccgttatttt tgtatttttc aaccaaagct tcaataatac ttgacgtctc
     5221 atcgtctgaa tcgtcaagta cctgtatatc catacgttcc tttggaaaat ccatactaca
     5281 aattgcattg attagacgtg tagccacgta tttttcatta tagattggta actgaattgt
     5341 aactcgcggg catgtttcag cagaataatt gattttcttt ctaatcttat tattcactga
     5401 attcctagta gacctgtaac tcaaataatt aaaattcaat gtgtaaactg tcattatcca
     5461 agctattgcc atcaaaacat agtacaaata accgctaaat tctgatatta tcttctatca
     5521 ctacctattg taaaaatgta cgagtaaata tttataggtt cactgcaagc ctgctgacat
     5581 tattgaccct tttggaatat ttttacacac tgaggaggac aaacattttc acatgccata
     5641 cagaaaatgc aatctttctc tcttatcatg aaaggctttt tctccgatgc aggatgacct
     5701 ggtgtatcca accactcata gacatttaca ggacatgctt caatacaggc tccatcggct
     5761 acacaaatat cgaaatctac tgtaacttcg gttccccaga taccaagctg ccctggcgga
     5821 tcaactggac cccacacctt aattccttgg tagcttcctt ttacctggcg ttttgatttg
     5881 aattcagggt ctattggacc atctatcttt gaatatgaat ttcctgtccc aacaagtgaa
     5941 atggttgtat ccccacctgt cattgcggga ggggcttgtg gaggcggtgt aactgatggt
     6001 gcatttacct gaacctgtgg ttgagatgag cgctccgggg actttacatc ctgtgcgaca
     6061 gaaggatctc gagatattgg tttctttttg agtggggtta gttcatctaa ttttttcagt
     6121 gcgtcttcag ctgataattt ttgtgatttt ttgtagtgat ctattagttt atcgccaatt
     6181 ttagagttcc atattatcgt gtcgataatt atctttgctt tggtatctgt cttttgtcta
     6241 taatttttaa tccaatagtg gtcgccaaag tactccaatg gcttgatctg ataaattata
     6301 tccacaacat cgcctgagac aatttcaact gtaatttcta aatctgcttc gacatctttt
     6361 tgggttattg catcagtacc agtttctgtc catctgtctg taacatagat tcgatctgca
     6421 taggaatc
//
LOCUS       DASUMD010000163         3460 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_714949, whole genome shotgun sequence.
ACCESSION   DASUMD010000163 DASUMD010000000
VERSION     DASUMD010000163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3460)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3460)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3460
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_714949"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(65..460)
                     /locus_tag="VFX26_04580"
     CDS             complement(65..460)
                     /locus_tag="VFX26_04580"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX5573785.1"
                     /translation="MAQVKKRILIVDDERDVGMTLKMILENYGYDIDSFTDPAVALEQ
                     FKPSLYDLTILDIRMPEINGFELYDQLKSRDPNIKTLFLTALSSVVSYNTENSTVYPI
                     EGKRLFVKKPVGNKELLEQVNSMVKWRSN"
     gene            complement(489..896)
                     /locus_tag="VFX26_04585"
     CDS             complement(489..896)
                     /locus_tag="VFX26_04585"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX5573786.1"
                     /translation="MSSEQQDRGRIVSVVDDDIGTATFFHEALRQNIDGISVFSFIDP
                     VKAFEHFTENKENYALVISDLRMPGLNGLELLKKVKTSNPKVRTILMSAYNFEEEEKF
                     QQYMEEAVINSTIEKPVTMNRLYERVREQLFVN"
     gene            1053..1448
                     /locus_tag="VFX26_04590"
     CDS             1053..1448
                     /locus_tag="VFX26_04590"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX5573787.1"
                     /translation="MARILLVDDDKDVGRTYELILESHGFDVDCFTDPAMALEQFKPN
                     LYDLTILDIKMPDPNGFKLYDQLKSKDSKIKTLFITALSSVESFNTENKEVYPIRGQR
                     HFIKKPLGMDELLAQVYTMLVPQEEYANS"
     gene            1495..3045
                     /locus_tag="VFX26_04595"
     CDS             1495..3045
                     /locus_tag="VFX26_04595"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX5573788.1"
                     /translation="MNPFLALLQRANARVILKIALLVFVEIGLICGSFFILTFYQSQG
                     TSIGNSINLAGKNRYLTSNSLLQTEKFLDGSSDILKLEAARDSLEANIDAITYGGSIS
                     GVNIKSLPSDFSEYLNNVSSDFSAYNALIDEKIIGRSQGTLGTPETVLVLKQDLEATA
                     SNLVRSSDILVTALGSYADNNSQNLIILQILLAVLNIGILVLILYLVSRILKPISELR
                     QATSEIKKGNLRYHVEQKSNDELGELTDSFNSMIDSIRSYIEEQRRLSDELKTANEEI
                     QQREHMKDEFINVAAHEMRTPVQPILGLSELLKSLRHENKLPVTKEEELLDMIIINAK
                     RLLLLQENILDVSRIENKLLKLNKNQCDLVEIISTAIQDAENQIDKNMVELRYKPSET
                     NSLLVVADRAKLTQVVSNLLNNAIKFTRAGSITVIVVKDGNKGIVQIKDTGTGIHPRV
                     ESKLFSKFVTNSSSGTGLGLFISKIIIEAHGGKISGYNNTNGKGATFSFSLPLVVLDV
                     AQNVDVNV"
BASE COUNT         1118 a          634 c          625 g         1083 t
ORIGIN      
        1 actaacagcg taatttttaa aataacttta gagttcgctc gtcgaagtag agcaaggacc
       61 ggattcaatt agatctccac ttcaccattg aattaacttg ttccaaaagt tccttgttgc
      121 ctacgggttt cttcacgaaa agtctttttc cctctatagg gtagactgtg ctattttcag
      181 tattgtaaga cactacgcta cttagcgctg tgagaaatag agtcttgatg ttcggatccc
      241 ttgatttaag ttggtcatat aattcgaagc cattaatttc tggcatccta atatctaata
      301 tcgtcaagtc atatagactg ggtttgaatt gttctaaagc cacagccgga tctgtaaagg
      361 aatctatatc gtatccataa ttttcgagta tcattttcag agtcattcca acgtctctct
      421 cgtcatccac tatcagaatt cgcttcttca cttgagccac ttacaccaat cctcgcttat
      481 gttctctttt aattaacaaa taattgctct cttactcttt catataatct attcattgtg
      541 acaggctttt caatagttga gtttatcaca gcttcttcca tatattgctg gaacttttct
      601 tcttcctcaa aattatatgc actcatcaat atcgttctta ctttgggatt cgaagtcttt
      661 acttttttga gtaattctaa accatttaga cctggcattc ttagatcaga aataactagt
      721 gcatagttct ccttgttctc tgtaaaatgt tcaaatgcct tgactgggtc gatgaaagag
      781 aaaactgaaa ttccatcaat attttggcgt aaagcctcgt gaaagaatgt ggcagtacct
      841 atgtcatcat ctactacact aacgatcctg ccgcgatcct gctgttcact agacatctcc
      901 taagtcggtt gattctagca caatctataa gaatattcct cattcgttaa taagtgatcg
      961 agtaataagt aaacttaata cattatagta atatttctaa caccatctat ttgataatag
     1021 attgtaatga aataattgcg aggtcggtgt aaatggcccg gattctgcta gtggatgatg
     1081 ataaggacgt aggcagaacc tacgaactga tactcgaaag tcatggattc gacgtagatt
     1141 gctttacaga cccggctatg gctttggaac aatttaaacc aaatctatat gacttgacaa
     1201 tattagatat taagatgcca gatcctaatg gttttaaatt gtatgaccaa cttaaatcaa
     1261 aggattcaaa aatcaagacc ctatttatca cagcacttag tagcgtagag tctttcaata
     1321 ctgaaaataa ggaagtttac cctataaggg gccaaagaca tttcatcaag aaacccctag
     1381 gtatggatga acttttggca caagtttata caatgttagt tccccaagaa gaatatgcga
     1441 atagttaaag acttagcaat atcaaccgat gttttctgta aggtggaggt ctaattgaat
     1501 ccgttccttg ctctacttca acgagcgaac gcaagagtta ttctaaaaat tgcgctgtta
     1561 gttttcgttg agattggttt gatctgtggc agttttttta tactgacatt ttatcagtcc
     1621 cagggaactt ccattggaaa ttcaatcaat cttgctggaa aaaatcgata tctaacgtct
     1681 aattcattat tacaaactga aaaatttctt gacggctcat ctgatattct aaaactagaa
     1741 gctgctcggg atagcttaga agcaaatatt gacgccatca cgtatggagg aagtatttca
     1801 ggagtaaata ttaaatcact cccgtcagat ttttctgaat atctcaataa cgtatcaagt
     1861 gatttctctg cctacaatgc tctgatagat gaaaaaataa ttggtcgatc tcagggaact
     1921 ctaggtacgc ctgaaactgt tttagtattg aagcaggatc ttgaagcaac tgcctcaaac
     1981 ttggtacgtt cctccgatat tttggtaaca gctctaggct cgtacgcaga caataattca
     2041 cagaacttga tcatattgca gatccttttg gctgttctta atataggcat cttggtactg
     2101 attctatatt tagtctcaag aatacttaag cccatatctg agctaaggca ggcgacaagt
     2161 gaaataaaga aaggaaacct cagataccac gttgagcaaa agagtaatga tgaactaggg
     2221 gaacttactg attcattcaa ctcgatgatt gattctatca gaagctatat tgaagaacag
     2281 aggcgcttaa gtgacgaact taaaacggca aatgaagaaa tacagcaaag agaacatatg
     2341 aaagatgaat ttatcaacgt agcggctcac gaaatgcgaa ctcctgtaca acctattttg
     2401 ggtctatctg agctcctcaa atctctgaga catgaaaata agttacccgt taccaaagaa
     2461 gaagaattgc tagatatgat tattatcaat gcaaagagac tgttgctcct tcaagaaaat
     2521 attttagatg tttcaagaat agaaaataaa ttactaaaat taaacaaaaa tcaatgcgat
     2581 ttggtcgaaa tcatctcgac tgccatacag gatgctgaga atcaaattga taaaaacatg
     2641 gtagaattgc gatataaacc atctgagacc aattctctgt tagtagttgc ggatagagcc
     2701 aaactcactc aggttgtttc caatttactt aacaatgcaa ttaaatttac acgagctggc
     2761 agcattacag taatcgtagt aaaagatggc aataagggta ttgttcagat aaaagacaca
     2821 ggaacgggta ttcatccaag ggtcgagtca aaattattct cgaaatttgt cacaaattcc
     2881 tcatcgggaa ccggactcgg cttatttata tcgaaaatca taatagaagc ccatggaggc
     2941 aaaatctcgg gatacaataa cacaaacggt aaaggagcta catttagttt tagcttacca
     3001 ttagtagtgc tagatgtggc acaaaatgtt gatgtaaacg tttgaggcat ggtattggag
     3061 ggtacagctg tagtcgtgaa ttctgcaaat tgttatcctt ttagactaag ccttaatgct
     3121 tttgacgtaa ttctgctcac tactatacca gaatccattt ttagaaccga tagcgtcgtg
     3181 ggtaccgacg gccgaagatc tgcatattag tattttttag ttattcgcta tgaatggcca
     3241 taacatgtct atgatatcta tgggtaagta tatccaagcc gcaaattttg tattttattt
     3301 tctcggcttc aattatcata gcacaaaaat accgtagtga tatataataa cgctattgac
     3361 ataagaacag atactgatca gacaataagt tatcgaataa taagtaaagt ttaatatttg
     3421 ataaatattc tttaattata cgagtaattg gtaacttctt
//
LOCUS       DASUMD010000164         3510 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_603492, whole genome shotgun sequence.
ACCESSION   DASUMD010000164 DASUMD010000000
VERSION     DASUMD010000164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3510)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3510)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3510
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_603492"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1718
                     /locus_tag="VFX26_04600"
     CDS             <1..1718
                     /locus_tag="VFX26_04600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEX5573789.1"
                     /translation="PKVVLTADRTLMSPYRGISLASFFGCAPAIDPNRSHDTLLYKIL
                     RNQVTPRLLFDFICNPISHHNGLADYAPYGLRKVEASLVRDGYSREDVVVAHPDYVEN
                     FIGPETEVVGTYEMDPLGMGPVTMTFTYGRKQISYDEFYNRDLHMKINRAKEKNGSKA
                     KVIAGASGTWQYNYDPAKIEEYGLYGIVEGDLGGIGPEIDGAGSKFFDALINNELETA
                     NPFKKNPFKVEIKEFERGDNTYHGRFIHYWNEPTVDEIPTIINPSMHGMIEVMRGCGR
                     GCKFCDVTLRPLRYYPVEKVVKEIEINMKYGGLKNAWVHSDDIFVYGLNPRTTKNMQP
                     NREALEELFSGIMSTGIEHTNPTHGTLAGAIADERLIPNISKIIRASPDNMIGIQCGF
                     ETGSIRLIGKYADRKLAPFKPSEWHWVVKNGIKTLNENYWVPAFTLIMGLDNDETVED
                     SWETIELLHSLEKEQPDSKFTTTPLTFVPIGLLEKSDFFDIGNTMDPPKLGVMYKTWQ
                     HNFKYGIQKFMHKVGRDNPIKNFFFAGLARSLGGVPLGAMERYARRRGPEHERVIEKI
                     KANYW"
     gene            complement(1756..2334)
                     /locus_tag="VFX26_04605"
     CDS             complement(1756..2334)
                     /locus_tag="VFX26_04605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase"
                     /protein_id="HEX5573790.1"
                     /translation="MKQPDLDFYSRDTENVARELLGKKLVRMYDDGSGKLQRLSGTIY
                     ETEAYGSKNDPASHAFNGRTNRNSVMYGDVGKAYVYFIYGMHHCMNVTAHATNSNAGA
                     VLIRSLIPIEGIGTMIYLSNIKNKLNLINGPGRLTKALDINRSHNGLNLTDKRSILHI
                     ANGIKPKKVISTTRIGISRATEKYWRYLIAKE"
     gene            2741..2995
                     /locus_tag="VFX26_04610"
     CDS             2741..2995
                     /locus_tag="VFX26_04610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(2+)-trafficking protein"
                     /protein_id="HEX5573791.1"
                     /translation="MKCLKCGKEFEESENQDPSSLKYPSCEDCWKEWTTYGVMVINEM
                     HLDMSLPEHRKALKKYERGFFGLDKVEELKKNPENPGTPN"
     gene            complement(2988..3449)
                     /locus_tag="VFX26_04615"
     CDS             complement(2988..3449)
                     /locus_tag="VFX26_04615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573792.1"
                     /translation="MSNNSSDGDIENLLFIIANLPDFLKLSICRTKVKELVEMTESEK
                     KETMIRSLTSINLINQDKLVKLTKTWMKVISEIEPDQLTMILHCYLVILDSVKLFDKL
                     DPRLILNTFSSLEEGERDKLLVCIKEALFLNPNRGQILKTIPANLVKVILN"
BASE COUNT         1148 a          589 c          691 g         1082 t
ORIGIN      
        1 atccaaaggt tgttcttacc gcagatcgca ctcttatgtc accgtataga ggcatttcgt
       61 tagcatcatt tttcggctgc gcgccagcta ttgatccaaa caggtcacac gacacgttac
      121 tctacaaaat tcttcgcaat caggtcaccc ctagactatt gtttgatttt atttgcaatc
      181 ccatctcgca tcataatggc cttgcagatt atgcccccta tgggctgagg aaggtcgaag
      241 cttctttggt aagggatggt tacagcagag aagatgtagt agttgcacat ccagattatg
      301 tggaaaattt cattggtcct gaaacagagg tagtaggtac atacgaaatg gatcctcttg
      361 gcatgggtcc tgtaactatg acctttacat acggtagaaa gcagatctca tatgatgaat
      421 tctataacag ggatctgcat atgaaaataa acagagcaaa ggagaaaaat ggtagtaagg
      481 ctaaagtgat tgcaggtgct tcaggcacat ggcagtataa ctatgatccg gcaaaaatag
      541 aggaatatgg cttgtacggg atcgtagaag gtgatttagg tggaattggt cccgaaattg
      601 atggcgcagg ttccaagttt tttgatgcgt tgattaataa tgaacttgaa actgcaaatc
      661 cattcaagaa aaatcccttt aaagtggaga taaaagagtt tgaaagaggc gacaatactt
      721 atcatggcag atttattcac tattggaatg aacctacagt tgatgaaatt ccaaccataa
      781 tcaatcctag catgcatggt atgattgagg taatgagagg ttgtggacgt ggttgtaagt
      841 tttgtgatgt aactcttaga ccattaagat actatcctgt agagaaggtt gtaaaagaga
      901 tagaaatcaa catgaaatat ggtggattaa aaaatgcatg ggtgcatagc gatgatattt
      961 ttgtatatgg cttgaatccc cgaactacaa agaatatgca gccaaacaga gaagctcttg
     1021 aagaattatt ttctggaata atgtctactg gtatagaaca tactaatcct acacatggga
     1081 cccttgctgg tgctattgct gatgagcgct taattccaaa tatttctaaa ataattaggg
     1141 catcacccga caacatgata ggcattcagt gtggatttga aacaggaagt attaggttaa
     1201 tcggaaaata tgctgataga aaattagcgc cattcaaacc ttctgaatgg cattgggttg
     1261 tcaagaatgg aatcaagaca ttaaacgaaa actactgggt tccggcgttt acactaataa
     1321 tgggattaga caatgatgaa actgtcgaag atagttggga aacaattgaa ttgcttcatt
     1381 ctttggaaaa ggaacaacca gattctaagt ttacaacaac tccattgaca tttgttccaa
     1441 taggactgct tgaaaaatct gacttttttg atatcggaaa tacaatggat cctccaaagt
     1501 tgggagtgat gtacaagaca tggcaacata atttcaaata tggaattcag aaatttatgc
     1561 ataaagtggg tcgtgataac ccgataaaga atttcttctt tgcaggactc gcaagatcat
     1621 taggaggagt tccactaggt gcaatggaaa gatacgctcg aagaagaggc cctgaacacg
     1681 aaagggtaat tgagaaaatt aaggccaact attggtaatt acgctaagta tttagaggac
     1741 taggcgtaac cttcattatt cttttgcaat caaatatcgc caatattttt ctgttgctct
     1801 acttatccca attcgagtgg tcgaaattac cttcttaggt ttaatcccat ttgctatatg
     1861 taatattgat cgtttgtcgg tcagattgag cccgttatga gatctgttaa tatctaaagc
     1921 ctttgttagt cttccaggac cgtttattaa atttaatttg tttttgatgt tagagagata
     1981 aatcattgtg cctattccct caattggtat taatgatcta atcaatacag ctcctgcgtt
     2041 gctattcgtg gcgtgtgcag tgacattcat acaatggtgc atcccgtaaa taaaataaac
     2101 atatgcttta ccaacatctc catacattac tgaatttctg ttagttctac cgttaaaagc
     2161 atgacttgca ggatcatttt ttgaaccgta tgcttccgtc tcatatatgg taccggataa
     2221 tctctgtagc ttccctgagc catcatcata catccggacc agtttcttac ctagcagctc
     2281 ccttgccaca ttttctgtat cccttgaata gaaatcaaga tccggttgtt tcatggtgaa
     2341 ttagaatgat agtaaataaa aataataata ttttgttctt agcaggacaa gatcgttagc
     2401 tatacattgt cctgttaatg cggaattagc attaatataa atactaaaaa tttaatccag
     2461 tttatatgtt aaagtttaac aaatttagtt tcctaaagaa aaatacttgt gagttttgtg
     2521 gtaagcgctt taggacttta gaagaattga tgcaacattt tcaaattacc catgatgata
     2581 gaacttacga atgtaaacag tgtgatatga aatttgaagg tatggaggtc atgcgtgatc
     2641 atattaagag gaatcacagt tacaaaaaat gatagtgatg cccaattcga cgcttattga
     2701 aataaaacaa taaaatatcc tttatgtacc atcacagtaa atgaaatgct tgaaatgtgg
     2761 caaagaattc gaagaaagtg aaaatcaaga cccttcttca ttaaagtatc cgtcctgtga
     2821 agactgttgg aaagaatgga ctacttacgg agttatggtg attaatgaaa tgcatttaga
     2881 catgtcatta ccagagcaca ggaaagcact aaaaaaatat gagagagggt tctttggctt
     2941 ggacaaggta gaggaattga aaaagaatcc tgaaaacccg ggaaccccta attgagtata
     3001 actttaacaa ggtttgcagg aatagtcttc aaaatttgcc ctctgttagg attaagaaat
     3061 aatgcttcct taatacaaac caacagttta tccctttcac cttcttcaag ggaagaaaaa
     3121 gtattcaata tcaatcttgg atctaattta tcgaagagtt tgacactatc taaaatcaca
     3181 agataacaat gtaaaatcat tgttagttga tcaggttcta tttctgagat aactttcatc
     3241 cacgttttgg ttaacttaac cagcttgtct tgattgatca gattgataga agttagactt
     3301 ctaatcatgg tctctttttt ttccgattca gtcatttcaa ccaattcctt tacttttgtt
     3361 cgacaaatcg aaagctttag aaaatcagga aggtttgcta taataaagag taagttttct
     3421 atatcgccat cgctagaatt gttactcaag gtagaaaatc atgaattcag tttatcatta
     3481 acatatttaa tttgttgttc ctagacattc
//
LOCUS       DASUMD010000165         3152 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_715453, whole genome shotgun sequence.
ACCESSION   DASUMD010000165 DASUMD010000000
VERSION     DASUMD010000165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3152)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3152)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3152
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_715453"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..632)
                     /locus_tag="VFX26_04620"
     CDS             complement(<1..632)
                     /locus_tag="VFX26_04620"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: protein motif:HMM:NF002288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004413 - homoserine kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006566 - threonine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HEX5573793.1"
                     /translation="MKETVNFCEARAPSSTANLGPGFDVFGLGLDLFYDTVSISKLAT
                     KNGKIKITLENNNKIPSIAEENSAGLPIMKIAQKYKIKNDLDIRLTKGVPIGLGLGSS
                     AASSAAAVTAFNELFQCKLTENELLDFAAEGEVSSAGVKHYDNVVASLFGGFVIVRTF
                     PTLQFVRINTPKDLILVVCVPQMVTPPKKTKLARSVIPKTIPIEDHTRNLA"
     gene            complement(641..1399)
                     /locus_tag="VFX26_04625"
     CDS             complement(641..1399)
                     /locus_tag="VFX26_04625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP/GTP-binding protein"
                     /protein_id="HEX5573794.1"
                     /translation="METIFVTGTAGAGKSLLTSKLMQWYKDNNFYPISLNLDPGVISL
                     PYEPDVDVRNYIDIGKIMSEHDLGPNGALIMAADMIATKLDEIQEEVYNLNPDFVVAD
                     TPGQVELFIFRASGPYFVSNFQSDNKINIFTFDGILASSSPINFISIALMATSVRLRL
                     NISQIDVMTKRDLVIDKLGDIMRWSSKSSLEDSLQNEKNIEHSILSKDLLQALFKNKL
                     MQNPILVSSLTMSGMVNLTAALSRVLNLGEDKGD"
     gene            1480..2529
                     /locus_tag="VFX26_04630"
     CDS             1480..2529
                     /locus_tag="VFX26_04630"
                     /inference="COORDINATES: protein motif:HMM:NF015651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysylphosphatidylglycerol synthase transmembrane
                     domain-containing protein"
                     /protein_id="HEX5573795.1"
                     /translation="MKWRIIAVAVSLIPFLLLFIFTPVSPADVFSVGALPFLLSVSAV
                     MVRILLQAYRFRYFINHFIGPNYSTTLKTMNARIAGEFVTQTTPSFIGGEIVRIAWLI
                     KNGVPTGKAAWVATAEIIADVFAGSILAFIAGGLAILSGGFFIGILVILVVVPTFGFW
                     FLVVVMSANRNIQLPKFVLKLIKKFLSKERSDHLIRSTNIALADLCKMSRENFASFNS
                     VKVLSVGMAITFVAFAFQGISFLVLAESAGYHIGFFKSFMATSASTALSTLPITIGGS
                     GLAELGVWAYITNINTIPDLTDVLNSSQLSVIIAWRIATYHVPLVIMWIALMRITIGK
                     DSIANQIKSKNLDNS"
     gene            2577..>3152
                     /locus_tag="VFX26_04635"
     CDS             2577..>3152
                     /locus_tag="VFX26_04635"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX5573796.1"
                     /translation="MNKLKGKTVVVTGASSGIGRSTVLDFAKQQVKAIILVSRNKERM
                     SQISSEISDKCESTSFSCDVSDKSKVLQMANDVLSLYGHVDILVNNAGIGILGKVADQ
                     SIEEIELVTKTNYLGMIYCTKAFLNSMLSKKNGRIINVASLAASFGIPGLAAYCGSKF
                     AMLGFSESLQHELIGTGIRVTVVSPIGVKTNF"
BASE COUNT          932 a          567 c          590 g         1063 t
ORIGIN      
        1 gctaaatttc ttgtatgatc ttcaataggt atagttttgg gtatcacgct tcttgctagt
       61 tttgttttct taggtggagt taccatttga ggaacacaaa ccacgagtat caaatcttta
      121 ggtgtgttta ttctaacaaa ttgaagtgtg ggaaatgttc ttacaattac aaatcctccg
      181 aacaatgaag ctacaacatt atcgtaatgt tttacaccgg cactactaac ttctccctct
      241 gcagcaaaat ctaataattc attttctgtc aatttacatt gaaaaagttc attgaatgca
      301 gtaacggcag cagcactgga tgcggcacta cttcctaatc ccagtcctat cggtactcct
      361 ttggttaacc gaatgtcaag atcatttttg attttgtatt tttgggcaat tttcattatc
      421 ggtagacctg cagaattttc ctcagctatg gaaggtattt tattattatt ttctaatgtg
      481 atttttatct ttccattctt tgttgctaat ttactgatag atacggtatc atagaaaaga
      541 tcgagtccta atccgaagac atcaaaccct ggtcctagat tagcggttga tgatggtgcc
      601 cttgcttcac aaaagttcac tgtttctttc attcttaatt ctaatctcct ttatcctctc
      661 ctaaatttag caccctcgaa agtgccgcag taagatttac catcccgctc attgttaagc
      721 ttgaaacaag aattgggttt tgcattagtt tatttttgaa taatgcctgc aatagatcct
      781 tactcaaaat cgaatgctca atgttctttt cattttggag tgaatcttct agagatgatt
      841 tagaggacca tctcataata tctcctagtt tatcaattac cagatctctt tttgtcatta
      901 catctatctg cgaaatgttt aatcgaagtc tgacagatgt cgccattaat gcaatagaaa
      961 tgaaattgat tggagatgag gacgcgagaa ttccatcgaa ggtaaatatg tttatcttat
     1021 tatccgattg aaaatttgaa acaaaatacg gtccacttgc tctgaatatg aatagctcga
     1081 cttgacccgg tgtatctgct accacaaaat cgggattcaa attataaact tcctcttgga
     1141 tttcatctaa tttcgttgct atcatatctg cagccataat gagtgcacca ttgggtccta
     1201 aatcatgttc agacattatc ttgcctatgt caatataatt tcttacatcg acatctggct
     1261 cataaggtaa tgaaataaca cctggatcaa gattcaatga gataggatag aagttattat
     1321 ctttgtacca ttgcataagt ttggatgtaa gaagtgactt tccagctcca gctgtgccag
     1381 taacgaaaat agtttccaaa tatacttgaa acaaaagtgt tgaatatatt aattctattg
     1441 attattatat gactgtctat tattttgcat tgagccggtt tgaaatggag gataattgca
     1501 gttgctgtaa gccttattcc atttttatta ctgtttatat ttacacctgt ttccccagca
     1561 gatgttttct ctgtcggggc attgccattt ctgctttctg tctctgctgt catggttaga
     1621 atcttgttac aagcgtatag attcaggtat tttattaatc acttcattgg accaaattat
     1681 agtacaactc tgaaaactat gaacgcgagg attgctggag aattcgttac acagactact
     1741 ccatcattta taggcggtga aattgttagg attgcatggc taattaaaaa cggggttcct
     1801 acaggaaagg ccgcttgggt ggctactgca gaaataatag ccgatgtttt tgcagggagt
     1861 atcttggcat tcattgcagg aggtctggct atactcagtg gtggattctt cattggcatt
     1921 ttagtcattc tagttgtcgt cccaacattt ggtttttggt ttctggtagt tgtaatgtct
     1981 gcaaacagaa atattcagct gcccaaattt gtcctcaaat taattaaaaa attcctatca
     2041 aaagaaagat cagatcatct aatacgttca acaaatattg ctttggcaga tctgtgcaaa
     2101 atgagtagag aaaattttgc ttcgttcaat tcagtaaagg tcctttctgt aggaatggcg
     2161 ataacctttg tggcttttgc ttttcagggt atttcatttc tagtgctagc agaatcggcc
     2221 ggttatcaca ttggattttt caaatcattt atggccactt cagcatctac agctttatcc
     2281 accttgccaa ttacgatagg agggtcagga ttagcagagt tgggcgtttg ggcatatatt
     2341 acaaatataa acactattcc ggatttgact gatgtactga actcttctca attgtctgta
     2401 atcatagctt ggaggattgc tacttatcat gtaccacttg tcataatgtg gattgccctg
     2461 atgagaatta caattggtaa ggactctatt gcaaatcaga ttaaatctaa gaatttggat
     2521 aacagctaaa caattttagt taaggtaggc tcgatcaata tcaatgagga cttgcaatga
     2581 ataaattgaa agggaaaaca gtcgtagtaa ctggtgcatc atcaggcata gggagatcaa
     2641 cagttttaga ttttgcaaaa caacaagtca aagcaattat acttgtttct agaaacaaag
     2701 aacgtatgtc acagatttcg tcagaaatta gtgataaatg tgaatctacc tcattttcct
     2761 gtgacgtatc tgataaatcc aaagtattac agatggccaa tgatgtcctt tcactttatg
     2821 gccacgttga catccttgta aataatgccg gaattgggat cttgggaaaa gtagcggatc
     2881 aatcaattga ggaaatagaa ctagtcacca aaacaaatta cctcggaatg atttattgta
     2941 ctaaggcgtt cctaaactca atgttaagta aaaaaaatgg acgtataata aatgtcgcat
     3001 cactggcagc tagctttgga attcctggtt tagccgcata ctgtggttca aaatttgcca
     3061 tgcttggatt ttccgaatca ctccaacacg aattgattgg gactggaatc cgtgttactg
     3121 tagtaagtcc tataggtgta aagacaaact tt
//
LOCUS       DASUMD010000166         2150 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_715766, whole genome shotgun sequence.
ACCESSION   DASUMD010000166 DASUMD010000000
VERSION     DASUMD010000166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2150)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2150)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2150
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_715766"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..184
                     /locus_tag="VFX26_04640"
     CDS             <1..184
                     /locus_tag="VFX26_04640"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HEX5573797.1"
                     /translation="AMVPYKGSVTDLIKQFVGGIRSGLSYCGAKNIVEMQHNAEFVKI
                     THAGYTESQPHDVDVM"
     gene            complement(654..1094)
                     /locus_tag="VFX26_04645"
     CDS             complement(654..1094)
                     /locus_tag="VFX26_04645"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX5573798.1"
                     /translation="MVEDNSISKSKLVAIVDDEDDIAKLFLDALGTINGITIFAFTDP
                     VMALEHFKLNKENYVLVISDLRMPGLTGTELIEELKKSNRFIRTILMTAFTINDNLFQ
                     EFTKKELINGFLQKPIRLDDLRAEVNNQLHTYELQKEESFIKIS"
     gene            1318..1812
                     /locus_tag="VFX26_04650"
     CDS             1318..1812
                     /locus_tag="VFX26_04650"
                     /inference="COORDINATES: protein motif:HMM:NF024804.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEX5573799.1"
                     /translation="MCAQIDRPDIGLSQIDRKILKILLTPNGHLKSTKNISTKLGLPI
                     TTVRRRRKRLEDKFLKVQYVLDIEKFGWRRIDFFISIRNGLVNGVANKLMELNDVTYV
                     GKSIGEHTIDLRVETIVKDNSVLLDLLEEIKGMEGVKDVVWSEIVSVVGRKISIPISI
                     IDKI"
BASE COUNT          732 a          350 c          379 g          689 t
ORIGIN      
        1 ggcaatggtc ccttacaagg gaagtgttac tgatctaatt aagcaatttg ttggaggaat
       61 tagatcgggt ctaagttatt gtggtgcaaa aaacattgtg gaaatgcaac ataacgcgga
      121 atttgtaaag attactcatg cagggtatac tgaaagtcag ccacatgatg tggacgtaat
      181 gtagaaacat catacaatgt catattttta tttgtattat ttcaaaacaa gatgacaatt
      241 gttatgagaa aatccaactg gtggaatgag ttttcatcaa atgactgcaa aagcacaatc
      301 acctaatttc caccagttgt tttgctgaaa cgttatagta cacagctata cacactatat
      361 aaaagatcca ttttcttggt taattttgat tttttagacc atctttcagc ctcctattga
      421 tcaaattgat acgcataagc ggtcagaaat aatatatttt aagaaattta gatcttacct
      481 ttgtttaatc aacgttgaac tacattagta tccatcataa aaacaatgac agttcttttc
      541 ctgctatttg gactcccgta ttaatctata taatcccatt ttcgcatgga tagaattttt
      601 tggaatcgat gatcattagc tgaaaggtaa aggatgaact ctttacgtga tgcttacgaa
      661 atttttatga atgactcttc tttttgtaac tcgtatgtat gtaactggtt attcacttct
      721 gcacgcaaat catctaagcg gataggtttc tggagaaatc catttatcaa ttcctttttg
      781 gtaaattctt gaaataaatt atcatttatc gtgaaggcgg tcattagaat ggttcttata
      841 aatcgattcg acttttttaa ctcctctatt aactccgttc cggtaagacc gggcattctc
      901 aaatcagata tcactaaaac gtagttctct ttattgagct taaagtgttc gagtgccatt
      961 actggatctg taaacgcaaa aatggtaata ccattaatcg ttcccaaggc gtcgagaaag
     1021 agtttggcta tatcgtcctc gtcgtctact attgctacaa gtttactctt agagatggaa
     1081 ttatcctcga ccaactaata ttgcctgcta atctttgcgc tgatccacta taaatgactg
     1141 gaattcaaaa aaccataatc tctgcctcta atgtgcttaa agtgatatga agatgttaac
     1201 aaaattcaaa agtgaatcaa tttttcaaac atttagtcat ttgtcccttt taagctggct
     1261 gttttttaat atttcaaaat aaaaaatata tagcttaaat tcgcaatata tggaaaaatg
     1321 tgtgcgcaga ttgatagacc cgatatagga ttatcacaaa tagacagaaa aatattaaaa
     1381 attttgctca cccctaacgg tcatctaaaa tctaccaaaa atatatccac aaagttaggg
     1441 cttcctatta caacggttag acgaagacgt aaacgactag aagacaagtt tttaaaagta
     1501 caatatgtgc tggatattga aaaatttgga tggaggcgta ttgatttctt tatctcgata
     1561 agaaacggat tggtgaatgg tgttgccaat aaactaatgg aactaaatga cgtgacatat
     1621 gtggggaaga gtatcgggga acatactatc gatttaagag tagaaacaat tgtaaaagat
     1681 aactccgtat tgctcgacct tctggaagag ataaaaggca tggaaggcgt taaagatgta
     1741 gtatggagcg aaattgttag tgttgtagga aggaaaatat caatacccat ctctattatt
     1801 gacaaaattt gattaatatc ataacattac tggcttgagg atcgtaagct cgaaggtcat
     1861 gaacaaggag caacgaatcc accagttttg tgcttagagt atttgttact tgattttcaa
     1921 ttataaatcg ctataaaccg gcaaatttat tatcttaaca aaaaagtcaa aacgtaaata
     1981 atcaatggcg gtaaaaacca aagttctaaa ataaattgtt cttttagaag atcagctacc
     2041 agccgagcaa gagaaactct gaaagtgtga aagaggcaat ttagctagtc acacatattc
     2101 aaattgcatt ttaaccgtca ttttgtttaa agtataacat cactttttcc
//
LOCUS       DASUMD010000167         2478 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_384030, whole genome shotgun sequence.
ACCESSION   DASUMD010000167 DASUMD010000000
VERSION     DASUMD010000167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2478)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2478)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2478
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_384030"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(146..1015)
                     /locus_tag="VFX26_04655"
     CDS             complement(146..1015)
                     /locus_tag="VFX26_04655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HEX5573800.1"
                     /translation="MKIGRIKIEEVGETYGIISPNGKKIITKLDFQEQTGVPIPQTIK
                     EFIVRGWIDEVNKYISGIKFSNEINHDALLTPIPDPSKIICLAFNYYDHARDAGLTPS
                     DEPVIFIKPRTTLNHPFNDIKCPYFVQRLDYEAELAIIIGKNTKNIEPEKAADCIFGY
                     TILHDVSARDIQFKDKQFTRGKSIDTFAPCGPWITTKDEIRDPQNLQIVTKVNGETRQ
                     NSSSSKMVISIEKIISSLSKVMTLESGDIISTGTPAGVAMSMKEPRYLKDGDVVEITI
                     ENLGTIRNRITFV"
     gene            complement(1021..>2478)
                     /gene="gltX"
                     /locus_tag="VFX26_04660"
     CDS             complement(1021..>2478)
                     /gene="gltX"
                     /locus_tag="VFX26_04660"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: protein motif:HMM:TIGR00463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEX5573801.1"
                     /translation="PELQMTETQVVTRFPPEPNGYPHIGHAKAVIIDEEYARIYGGKL
                     ILRFDDTNPLNEKLEYYEAIRNDLEWLGVKPDIVKNTSDDILVLHDYGKKLTRSGNAY
                     VCTCDINKIRKLRMQQIECPCRACIDNGDQNIERLNKIFDGTYHQNEAIIRFKGNMHD
                     NNTVLRDPTLFRIIESPHPLLGEKVQVWPTYDFAAPVEDSLDGVSHALRTKEYELRNA
                     LYLDILDKLELRKPIVVEFSRLEFENMPVSKRKIKELIDDGLITGWDDPRLLTLSAMR
                     RRGFDPKAIRSFVLSLGLTLAETKPPFKTLESMNRKIIDPIAIRLFFVKDPIMLIVDD
                     GKNTKVTLNNHPTRDLGTREVEVSNVIYISQDDAISLAQDKEVRLMELYNIKIKDIDL
                     ENKKVITASYLDNEIVRDMKKIQWVSDKNMTNYNILVPKELYLNDRFNPNSLENIEGY
                     AEASILQLKSRTPIQLIRFGFCNTHDKTSAIFIHR"
BASE COUNT          706 a          475 c          403 g          894 t
ORIGIN      
        1 cagtctctca atgtttcaat ccagctagcc agcataagat ccacattagt ggaattatac
       61 aagacttact gccatatttt ggaaaaagaa gtaatcagat taagaaagat tacccaagat
      121 aaaacgcagt aatttggttt caatactata caaaagtaat tcgatttcta atagtaccta
      181 aattttcaat tgttatttct acgacatcgc catcctttag gtaccttggt tccttcatcg
      241 acattgcgac tcctgctgga gttccagtag atataatatc ccccgattct aacgtcatta
      301 ctttactcag acttgagatt attttctcaa tcgatattac cattttacta cttgaagaat
      361 tttgcctagt ttcgccattg acctttgtaa caatttgtag attctgagga tcacggattt
      421 cgtctttggt tgttatccaa ggcccgcagg gagcgaatgt atcaatactt tttcctcttg
      481 taaattgttt atctttgaat tggatgtctc tggctgaaac atcatgcagt atggtatatc
      541 caaatataca atcagcggct ttctcaggtt caatattttt agtatttttt ccgataataa
      601 ttgccaattc agcttcatag tcaagacgtt gtacgaaata tggacacttt atgtcattaa
      661 atggatggtt caaagtcgtt cggggtttga taaaaataac aggttcatca gaaggtgtaa
      721 gtcctgcgtc tcttgcatga tcataataat taaaggctaa acagattatt tttgatggat
      781 ctggaattgg agttaatagc gcatcatggt taatctcgtt actaaattta ataccggaaa
      841 tatacttgtt aacttcgtca atccatcctc ttacaatgaa ttcctttatt gtctgaggaa
      901 ttggaacacc agtctgttct tgaaaatcaa gcttcgtaat tatcttttta ccattaggag
      961 agattattcc atatgtttct ccaacttctt caatcttaat cctgcctatt ttcattttgt
     1021 ctacctgtgt ataaaaatag cagaggtttt atcatgggta ttacaaaaac caaatctaat
     1081 caattgtatc ggagtacggg attttagttg caaaattgat gcctcagcgt atccttcaat
     1141 attttccaaa ctattggggt tgaatctgtc attaagatac agttcctttg gaactaggat
     1201 gttgtaattt gtcatgttct tgtctgatac ccattgaatt tttttcatat cccgtacaat
     1261 ttcgttgtca agataagaag cagtaattac ttttttattt tctaaatcta tatccttaat
     1321 ttttatatta tacaattcca tgagtcttac ttctttatct tgtgcaagag aaatggcatc
     1381 atcttgagaa atataaatca cattggagac ttctacttcc cttgttccaa gatcccttgt
     1441 tggatgatta ttcaatgtta ccttggtatt tttaccatca tcaacaatta acattatagg
     1501 atctttgaca aaaaatagtc gaatggctat gggatcaatt attttccgat tcattgattc
     1561 cagagtttta aatgggggtt ttgtttctgc caaagttaat ccaagactca agacaaaact
     1621 tctgattgct ttcggatcaa agcctcttct acgcattgct gacaaagtga gcagacgtgg
     1681 gtcatcccag cctgtaatta gaccatcatc tatcaattct ttaatttttc ttttggaaac
     1741 aggcatgttt tcaaattcta gtcttgagaa ttcaacaact attggttttc ttaattccaa
     1801 tttatctaaa atgtccaagt acagagcatt acgcagctca tactccttag ttctcagtgc
     1861 gtgactgacc ccgtcaagac tatcttcaac aggagcagca aagtcataag taggccatac
     1921 ttgtaccttt tcacccaaaa gtggatgcgg tgattctatg atcctaaaga gagtaggatc
     1981 tctcaaaaca gtattattgt catgcatatt tcccttgaat cttattattg cttcattttg
     2041 atgatatgtt ccgtcaaata tcttgttcag cctttcaata ttttggtccc cattatcaat
     2101 acaagctctg catggacatt caatttgttg cattcttaac tttcggatct tgttaatatc
     2161 acaagtacaa acataagcat ttccacttct tgtcagtttt tttccataat catgtagaac
     2221 aagtatatca tctgatgtgt tttttactat gtctggctta acccctagcc attctaaatc
     2281 attcctaatg gcttcatagt actctaattt ttcattcagt ggattcgtgt cgtcgaaacg
     2341 cagaatcagt ttacccccat aaattctggc gtattcttca tctattatga ctgctttcgc
     2401 gtggcctata tgcggataac cattaggctc gggtggaaat cgagtaacca cttgagtttc
     2461 tgtcatttgg agctctgg
//
LOCUS       DASUMD010000168         3573 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1048006, whole genome shotgun sequence.
ACCESSION   DASUMD010000168 DASUMD010000000
VERSION     DASUMD010000168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3573)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3573)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3573
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1048006"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            587..1126
                     /locus_tag="VFX26_04665"
     CDS             587..1126
                     /locus_tag="VFX26_04665"
                     /inference="COORDINATES: protein motif:HMM:NF014829.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573802.1"
                     /translation="MTRVICKTMILIDKIMGNINSDSHLKEKYRDMLKSDHVEKIEIT
                     RLESEKARIRKVSNKGTDLALTMTHGSHIKDGDVVLLTDDKMVIAKRVPEHVAKISLK
                     GNISAEQILETAIKLGHIIGNMHRAIKITNNKIYFPIQSESEIELFQKLLSNLIDNID
                     IKSDNIIFEPESGYDIHGH"
     gene            1116..1814
                     /locus_tag="VFX26_04670"
     CDS             1116..1814
                     /locus_tag="VFX26_04670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018050707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory UreF family protein"
                     /protein_id="HEX5573803.1"
                     /translation="MDTDIDRVDISLLQMSDSFFPTGLYATSNGLESLSQIKKLNRKD
                     ISRFITIHLRQVIGPSDCTALGNAYESCTKRDFVSLLIADKSLYFMRMVEETRSASVR
                     SGNQLLKCVSSFTKYKKVLRDYQNAINNGNATGLYPVSLGVATWSLDIPKNKAGLILL
                     YGFAVSVIGAALRLGILDHLESQQIIHELRPVILETIMKNIERPISNMWQFAPGLDIL
                     QMKHEMMDSKMFIT"
     gene            1834..2490
                     /gene="ureG"
                     /locus_tag="VFX26_04675"
     CDS             1834..2490
                     /gene="ureG"
                     /locus_tag="VFX26_04675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016530 - metallochaperone activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0019627 - urea metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreG"
                     /protein_id="HEX5573804.1"
                     /translation="MSSNRIPRVGIGGPVGSGKTMLIEQIVPILSKKGYKAGIISNDV
                     VSKEDADRMRQNLAREKGLVPEELVIGVATGGCPHTAVREDPSINLSVVEEMESKYNY
                     LDLILIESGGDNITTTFSPALADYFIYIIDVTGGDKYPRKRGLGIENCDLLLINKIDI
                     APYVGADLKIMERDAKIVRNKKPTVFVNSKTGQGVDIVVSYIIRDLLFEASPKTLVNN
                     "
     gene            2508..3530
                     /locus_tag="VFX26_04680"
     CDS             2508..3530
                     /locus_tag="VFX26_04680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreD"
                     /protein_id="HEX5573805.1"
                     /translation="MYYANIKKDYRNGLRIKNTERVAKSFEPRLTKIIDYYTPRNIPP
                     EIEAYSAEPHHPGVSNSGKVGILRLKFERDTDTEKTVIREQYCRVPLCIQRAMYLEES
                     LPAMAYVYIVSPSGGILQGDRYRIGITLGNSAFAHVTTQGATRIYKMEKNYATQMISI
                     NVGEGSYFEYIPDQIIPFHNSRFYQEVELSVHDNATMLYSEMIVPGRVESGEAFEYDV
                     CYIKTIAKNHLRKPRFVDIMKLQPKKEDLIVEGILGKFQVVGTIYIITRELYVKRLKH
                     EIIEKINEFEDKISGGVSILPTRQGIVVRILGNTAGDVKSLIFEVVRITRNQILGVSF
                     SGVRKT"
BASE COUNT         1236 a          567 c          736 g         1034 t
ORIGIN      
        1 ttatatgatc agcatcaagc gcatgacgta agcctaacag aatcattgtg ggaatcgaaa
       61 ttaaaacaaa tgttagtgga tcgaccaatt tacgacttgt aagtatcaac gaaggatgct
      121 tatatttctt aattttctcc agattccaaa agaattcaga attatcaaat tagcaataaa
      181 tttgacctta catacgtcct ataaaatgat gtcttaaatt tttgttccct atttctggat
      241 tttttcgatc aggaatataa aagaatgata aagacttcta aactcagatt agacattaat
      301 gcttttgtaa atttaaaatc ccttaggcta tcaggagtgg tatcatatgt agattgtatg
      361 tgtattgttt ccctgatttt agctggccta gtataccttg aataagctct attcatttta
      421 cactgctgtc agcggagaca gtgtttcaag gtcgacgaag agtatgattt tcgatggtaa
      481 ttagaaaaaa ctccaaactt taagacaatt gactatgcat agaagataga tgcggtgaga
      541 aaggtatagt gataaagaaa aaacataact atcagcaagc gattgtatga ctagggtaat
      601 ttgtaagact atgattctta ttgataagat aatggggaac atcaattctg attcgcatct
      661 taaagaaaag tatcgtgata tgttgaaaag tgatcatgtt gagaaaattg aaatcactcg
      721 acttgaatct gaaaaagcta gaataaggaa agtatctaat aagggaacgg atttagctct
      781 taccatgaca catggttccc atattaaaga cggcgacgta gtactattga cagatgacaa
      841 aatggtaata gcaaaacggg ttcccgaaca tgttgctaag atttctttaa aaggtaacat
      901 atcagccgaa caaatattgg aaacagcaat caaacttggt catattatag ggaatatgca
      961 tagagccata aagattacaa acaataaaat atattttcct attcaatccg aatctgaaat
     1021 tgaattgttc caaaagctac tttctaattt aatagataat attgatatta agagtgataa
     1081 cataattttt gagcccgaat caggttatga tattcatgga cactgatata gatagggttg
     1141 acatcagttt attgcagatg tctgactctt ttttcccaac aggactatac gcaacatcca
     1201 acgggctgga atcattgtca caaataaaga aattaaatag gaaggatatt tctagattta
     1261 ttactattca cttaagacag gtaataggac cgtccgattg tacagctttg ggtaatgcat
     1321 atgagtcttg cacgaaaagg gattttgttt ctctgcttat cgcagataaa tcactatatt
     1381 ttatgagaat ggtagaggag acacgaagtg cttctgtgag gtcgggtaat caattactga
     1441 aatgtgttag ctccttcaca aagtacaaga aagttttgag ggattatcaa aacgccatca
     1501 ataatggtaa cgcgacagga ctttatcctg tatcccttgg agtagcgacg tggtcacttg
     1561 atataccaaa gaataaagct ggattgatac tattatatgg attcgcagta agcgttatag
     1621 gagctgcttt gagactaggt atactcgacc atcttgagag tcagcaaata attcacgaac
     1681 taagacctgt cattttggaa accatcatga agaatataga aagaccaatt tcaaatatgt
     1741 ggcaatttgc accaggtttg gatattctac agatgaaaca tgaaatgatg gactcaaaaa
     1801 tgtttattac atgaaaattg tctaaatttt gttatgtctt ctaatcgaat ccctcgtgtt
     1861 ggaattggtg gtcctgtcgg gtcgggtaaa actatgctaa tagagcagat tgttcctata
     1921 ctttctaaaa agggttacaa agcaggaata atttccaatg acgttgtctc gaaagaagat
     1981 gctgacagga tgaggcaaaa tcttgcaaga gaaaagggac ttgtacctga agaattagta
     2041 ataggagttg ccacaggggg atgccctcat actgctgtga gagaagatcc atcaataaat
     2101 ctctctgtag tagaagaaat ggaatcaaaa tacaattatc tggatttaat tctgatagag
     2161 agcggagggg acaacattac aacaactttt agtccggctc tggctgacta tttcatttac
     2221 atcatcgatg taacaggtgg tgacaagtat cctagaaaaa gaggactggg aatagaaaat
     2281 tgtgatcttc tcctaataaa caagatagac atcgctccct atgtaggggc tgatctaaag
     2341 ataatggagc gagatgcaaa gattgttcga aataaaaaac cgacagtttt tgtcaattct
     2401 aaaacaggcc aaggagtgga tattgtcgtc tcttatatca taagggatct tctttttgag
     2461 gcttcaccta aaacactggt aaataactga cgataactag gttgattgtg tactatgcaa
     2521 atatcaaaaa ggattacaga aatggactcc gcattaaaaa cactgaaagg gttgcaaaaa
     2581 gttttgagcc aaggttgaca aagatcatcg actactatac tccgcgaaat attccaccag
     2641 agattgaggc gtattccgca gaacctcatc atcctggggt tagcaattct ggaaaggtcg
     2701 gtattttgcg cttaaagttt gaaagagata ctgatacgga aaaaaccgtt attcgagaac
     2761 aatattgccg tgtaccactt tgtatacaac gtgccatgta tttggaggaa agtctgcctg
     2821 caatggcgta tgtttatatc gtttcgcctt cagggggaat attgcaaggt gaccgatatc
     2881 gtattggtat aacgctcggt aacagtgctt ttgctcatgt taccacacag ggagctacta
     2941 gaatttacaa gatggaaaaa aattatgcaa ctcagatgat cagtatcaac gtgggagaag
     3001 gaagctattt tgagtacata cccgatcaga taataccttt tcataattct agattttacc
     3061 aagaagtaga attgagtgtt catgacaatg cgacaatgct ctattcagaa atgatagttc
     3121 caggtagagt agaaagtggt gaagcctttg aatacgacgt ctgttacatt aaaactatcg
     3181 cgaagaatca tttacgcaaa cccagatttg tggatattat gaagttacaa ccaaagaaag
     3241 aagacttgat tgttgaaggc atactgggaa agtttcaagt agttggcaca atatatatca
     3301 tcacaagaga actctatgtg aagcgcctca aacatgagat tatagaaaag ataaatgaat
     3361 tcgaagacaa gatatccgga ggtgtgtcaa ttcttccaac ccgacaggga atagtggtta
     3421 ggatactagg taacacggct ggagatgtga agagtcttat attcgaagtt gttaggataa
     3481 caaggaatca aattcttggt gtctccttca gtggagtaag aaagacataa tttgaattga
     3541 aaccaaacat gtttacacag atcatatagt aaa
//
LOCUS       DASUMD010000169         3223 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_716944, whole genome shotgun sequence.
ACCESSION   DASUMD010000169 DASUMD010000000
VERSION     DASUMD010000169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3223)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3223)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_716944"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(125..1144)
                     /locus_tag="VFX26_04685"
     CDS             complement(125..1144)
                     /locus_tag="VFX26_04685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00269 family protein"
                     /protein_id="HEX5573806.1"
                     /translation="MTIKGINDQCSQAITIPMSKVCSKCKKNNSIYLRQYSGEFLCKK
                     CFIKSIDYKAKRTISKYSMIKHGDTVAVAVSGGKDSLVLLNILKNIFSGPSPELIAIT
                     VDEGIKGYRDESLSIVKNFCSSIGVENRVMSFNELFGLSMDKAMEVRPSEKISSCSMC
                     GTFRRRAIDILAESCGANVIATGHNLDDYIQTFLINLFAGDVERIGWTYPEPVEYGNS
                     SLRKIKPLMEIYEREIVTYGIHTNIPFQTEECPYKDESIRSAFRSHLNNLEKIHPGIK
                     YNAYNSILKIAKKVKSANTSTINTTNVNNAIQQEHRRCLVCNRDSSNTVCSVCRTLNL
                     LVKGN"
     gene            1231..1707
                     /locus_tag="VFX26_04690"
     CDS             1231..1707
                     /locus_tag="VFX26_04690"
                     /inference="COORDINATES: protein motif:HMM:NF013224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEX5573807.1"
                     /translation="MTTSHDVIDEINLKIINILNKDSSLPFVEIAKQIGISDATVHIR
                     VRRLIAAGIIKKFTIALDNNKLGYDHLAFMGINIEPGTADEVTNSLSSIEEVLEIHEM
                     HGRFDLLLKIRAKDLEEMRDIVVNKIRKLPRIIETELMTALKTRKEDHMVPMDAAP"
     gene            complement(1734..1949)
                     /locus_tag="VFX26_04695"
     CDS             complement(1734..1949)
                     /locus_tag="VFX26_04695"
                     /inference="COORDINATES: protein motif:HMM:NF019876.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TFIIB-type zinc ribbon-containing protein"
                     /protein_id="HEX5573808.1"
                     /translation="MTNFCPECGGELKLDTATKNFICKSCGLFASREKMEELRDKTFR
                     DEGNDRKKYHDDYLDWWTSSKKDKQRM"
     gene            complement(2031..2897)
                     /locus_tag="VFX26_04700"
     CDS             complement(2031..2897)
                     /locus_tag="VFX26_04700"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: protein motif:HMM:NF014641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HEX5573809.1"
                     /translation="MSLSGVTVAITSSRRASELASLVRKFGGIPYIAPTIGIKNNNAL
                     NSECIKFIETIRNERMQFFVFMTGVGVFNLFQNIQKIDHLDTVIEKLRDTVVIARSNK
                     PAMELRKFGIRTNLVPDINTIEGILNLLGNFDIKNKNIGILWHGDYSHSFREKLESLG
                     SKVFEFSSYSYATSLGKTNAAMLKEMGYDYVPPSEEKIGRLIEDIMAGTIDTITFTSP
                     PAVKEFFEFAKRNNQIHALKERLNHNLLVVSIGPSTSKMLATFHVLVDVMPTTYRMGP
                     MVKELVDFISSY"
BASE COUNT          982 a          642 c          510 g         1089 t
ORIGIN      
        1 gatcagtcgc cagaatttta tttaagactt ctaatacaaa taactaacta cgtgactcac
       61 ccaggtaaag ttttctctac ttttatgttc aaacaaaatt gcattgatgg agagaaagca
      121 ggatctaatt tcctttgact aacaaattca atgtgcgaca gactgagcac actgtgttag
      181 aagaatctct attgcatacc agacatcgtc tatgttcctg ctgaatagca ttatttacat
      241 ttgtagtatt aattgtactt gtatttgcag attttacctt ctttgcaatt ttcaagattg
      301 aattgtatgc attgtatttt atgcccggat gtattttctc aagattattt aaatgactcc
      361 taaaggcact tcttatactt tcgtctttgt atgggcattc ttctgtttgg aatggaatat
      421 ttgtatgaat accgtacgtt acaatttctc tttcatatat ttccattaat ggcttgattt
      481 tccttaaact actattccca tactctactg gttctggata tgtccatccg attctttcca
      541 catcgccggc aaacaaattg ataagaaaag tctggatgta atcatccaag ttatgcccgg
      601 tagcaataac atttgctcca caagattctg caaggatatc tattgccctt ctccgaaaag
      661 ttccacacat cgaacatgat gaaattttct ctgagggtct aacctccatg gccttatcca
      721 ttgataatcc aaaaagctca ttaaaactca ttaccctgtt ttcaacgcct atgctggaac
      781 aaaaattctt tacaatgctt aatgattcat ctcgataacc cttaattccc tcgtctacag
      841 ttattgctat tagctcagga cttggaccac tgaatatgtt ttttagtata ttcaggagca
      901 caagactgtc tttacctccc gagactgcaa ctgccacagt atcaccatgt tttatcattg
      961 aatattttga tattgtcctt tttgctttgt aatctatcga tttgataaag cattttttac
     1021 acaaaaattc tccagaatat tgccttaagt atatggaatt atttttcttg catttactgc
     1081 acactttgga catcggaatt gttattgctt gggagcattg atcattaata ccttttatcg
     1141 tcattcgcac ggtccaggaa attatcactg gtcctcaaga aaactatttc taaaagcatt
     1201 taagtatata actacaaagt aatttttgat ttgacgacta gccatgatgt tattgatgaa
     1261 attaatctca aaatcataaa tatattgaat aaagactcct cgctaccctt tgttgaaatt
     1321 gcaaaacaaa tcggaatatc tgatgctaca gttcatataa gagtcaggcg actaattgcc
     1381 gcgggtatta ttaagaaatt caccatagcc ttggacaaca ataaactcgg ctatgatcac
     1441 ctggcattca tgggcataaa catcgaacct ggaaccgctg atgaagtaac aaatagcctt
     1501 tcatccatag aggaggttct cgaaattcat gaaatgcatg gaagatttga tcttctctta
     1561 aaaataagag caaaagactt ggaagaaatg cgcgatatag ttgtaaacaa aataagaaaa
     1621 ttgcccagaa ttatcgagac ggaactcatg acggcattaa agactagaaa ggaagatcat
     1681 atggtaccaa tggacgctgc tccgtaacta gaactcctta caggattttc tatctacatt
     1741 ctttgcttgt ctttctttga cgaagtccac caatcaagat agtcatcatg atattttttc
     1801 ctatcgttgc cttcatccct aaaggtttta tcccttaact cttccatttt ttccctggaa
     1861 gcaaaaagac cgcagctttt gcagatgaaa ttcttggtag cagtatccaa ctttaactcc
     1921 ccaccacatt cagggcaaaa attagtcaat ttgtttatta ttagtgtgac ctcataaaaa
     1981 atgttacgtg aatttcataa caatttcgcg ctagatcgcg aaatacacta tcagtacgat
     2041 gaaataaaat cgaccaattc ctttaccata ggtcccatgc ggtatgtagt tggcataaca
     2101 tctactagaa catgaaatgt cgcaagcatt tttgaagtag acggccctat agacacaaca
     2161 agtagattgt ggtttagcct ctcttttaac gcatgaatct ggttgtttct ttttgcaaat
     2221 tcaaagaact ctttaactgc aggcggactc gtaaaggtga ttgtgtctat agtacctgcc
     2281 attatatctt ctatgagcct tccaattttc tcttcgctag ggggtacgta gtcatatccc
     2341 atttccttta acatggcggc attcgttttt ccaagacttg tagcataact atacgatgaa
     2401 aattcgaata cttttgaacc taaagattca agcttttccc taaatgaatg tgagtaatca
     2461 ccatgccata atatccctat gttcttgttt ttaatatcaa agtttcccaa aaggttcaat
     2521 atcccttcaa tagtattgat atcgggaaca aggttagttc taatgccaaa ttttctaagt
     2581 tccattgctg gtttgttact tcttgcaatg actacagtat ctcgtaactt ttcgatcacg
     2641 gtgtctaagt ggtctatttt ttgaatattt tgaaataggt tgaatacacc aacaccagtc
     2701 ataaatacaa aaaattgcat tctctcattt ctgatggttt ctataaattt aatacactca
     2761 gaattcagcg cattgttatt tttaattcct atagttggtg ctatatatgg aatacctcca
     2821 aactttcgaa ctaagcttgc aagttcagaa gctctccggc ttgatgtaat ggctacggta
     2881 actccactta atgacatgca acaatcttgg aatcttagaa taattaaaac ttgagtttat
     2941 aacgattgaa caggccagtc caaatatatt cagctaattt ttataaattc tgattattta
     3001 cagtctacga caaagttagt ccgcatagtg caaaacctaa acggtgcatg gacttttctc
     3061 ttcatatcct ttgtatggat ctggtcgccc gtcaaatgcc atgcaccttt tgaaataaaa
     3121 aaaccaaatt aaattaaacc tttttgattt gaaggattcc cgaaatacca tcctcttttc
     3181 cttcactgaa attctcgatc tctggaattt cttgatcttt aga
//
LOCUS       DASUMD010000170         2402 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_606810, whole genome shotgun sequence.
ACCESSION   DASUMD010000170 DASUMD010000000
VERSION     DASUMD010000170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2402)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2402)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2402
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_606810"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..608)
                     /locus_tag="VFX26_04705"
     CDS             complement(<1..608)
                     /locus_tag="VFX26_04705"
                     /inference="COORDINATES: protein motif:HMM:NF014670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="creatininase family protein"
                     /protein_id="HEX5573810.1"
                     /translation="MSLYHLSNYEIKRGNKKIIIPLGSTEQHGPHLPVSTDTIIAEYF
                     ANQLTKKIPSYSLSGIPSGVSFEHRPFFNISVSNDLLSELLTQICVSLGENGFNQIII
                     INGHRGNMGVVQYIPQKVERINSKVKVFGINYWHLIEREFDHGGFVETSLMLAIAPKL
                     VQMHKAKSGYLNKKMLHSTYTTFLSNTSSFKITRNGVLGDPR"
     gene            complement(696..1562)
                     /locus_tag="VFX26_04710"
     CDS             complement(696..1562)
                     /locus_tag="VFX26_04710"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HEX5573811.1"
                     /translation="MNKSDRLIIELTVVGKDRKGVVADITNFIFKNNGNIEQINQDVI
                     NGLFGMQLEASFQQGNFKKVTFDDELKALAKKLMMEIKIHYQESKRLRNIAIFVSKET
                     HCLLKLLDAKSSGEIKANIVVIVGSENTTNSIAEKFNIPFYHIAHSQQIDAENEILDI
                     LDRYNVDLIVLGRYMRILTPNFVWRYPDRIINIHPSLLPAFPGAYAYVQAYERGAKIV
                     GCTAHFVTEDLDQGPIICQESFRVRPEDSVESIKRKGQKLEAVTLLEAVTLFLEDRIE
                     VNWGRVVIKDKK"
     gene            1791..1928
                     /locus_tag="VFX26_04715"
     CDS             1791..1928
                     /locus_tag="VFX26_04715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573812.1"
                     /translation="MIIITLHENVQFAIRCQDGIVTNVMQIFVISIFMMKITRKYAAL
                     D"
     gene            complement(2023..2153)
                     /locus_tag="VFX26_04720"
     tRNA            complement(join(2023..2067,2092..2098,2121..2153))
                     /locus_tag="VFX26_04720"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2093..2095),aa:Leu,seq:tag)
BASE COUNT          716 a          436 c          400 g          850 t
ORIGIN      
        1 tttctgggat ctcccaagac accatttctg gtgatcttaa atgacgaggt attactcaga
       61 aaagttgtat atgtagaatg caacattttt ttgttcaaat atccgctctt tgccttatgc
      121 atttgaacta attttggtgc aatggccagc attaatgaag tttctacaaa accaccatga
      181 tcaaattccc tttcaatcaa atgccaatag ttgattccaa atacttttac ttttgaatta
      241 attctttcta ctttttgtgg aatatattgt acaactccca tatttccgcg atggccattt
      301 attattatta tttgattgaa accattttct cccaacgaaa cacatatctg agttagcagt
      361 tctgaaagga gatcattact taccgaaata ttgaaaaatg gtcgatgttc gaatgatacc
      421 ccagaaggaa tacctgaaag ggaataagat ggtatttttt tcgtgagttg atttgcaaaa
      481 tactctgcaa ttattgtgtc tgtacttact ggaaggtgtg gcccgtgttg ttctgttgat
      541 cctaagggaa ttattatctt cttgtttcct ctctttatct cataattact gagatgatat
      601 aaggacatta gtataacaga tattctactg agttattaaa ctaatgaaat gaatcttcaa
      661 agtatcgagt aatctggaat tcaaagtttt agatcctatt ttttgtcttt aattactact
      721 cttccccagt tgacctctat gcgatcttct agaaacagcg ttactgcttc aagcaatgtt
      781 actgcttcaa gtttctgtcc ctttcttttt atggattcta cgctatcttc cggtctcacc
      841 ctaaatgact cttgacatat tattggtcct tggtctaggt cttctgttac aaaatgcgca
      901 gtgcacccta caatcttggc ccctctttca tatgcctgca catatgcgta ggcaccggga
      961 aatgcaggta gtaatgatgg atgtatgtta attattctat ctggatatcg ccatacaaag
     1021 tttggagtca aaatcctcat gtacctgccc agtactatca aatctacatt gtagcgatcc
     1081 aaaatatcca gtatttcatt ctctgcgtct atctgttgtg aatgtgcaat atgataaaaa
     1141 gggatgttga atttttctgc aatagaattt gttgtattct cacttcctac tatgacaacg
     1201 atattggctt taatttcccc ggaacttttc gcgtctaata gtttaagaag acaatgagtt
     1261 tctttgctaa caaatattgc aatgttcctt aatcttttag attcttggta gtggattttt
     1321 atctccatca ttagtttttt tgccagtgct tttagttcgt catcaaaagt tactttttta
     1381 aaattaccct gctggaatga cgcttccagc tgcataccaa aaagcccatt gataacatct
     1441 tgatttattt gttcaatatt tccattattc ttaaaaataa aattagttat atcagcaact
     1501 actcccttcc tatcctttcc tacaactgtt aactcaatta tcagtctgtc acttttgttc
     1561 atgaatacat tcgattaaaa tgcctcaaaa ttaaaggatt ctaaaattta gaacgctaat
     1621 gcttaaataa gctgattccg attgtaaagc gatgataaat acacttttag tgaatttatg
     1681 tctaaaagac tagcaaggat atgttctcta cgttaaatct tttcaatttg gtttgcaaga
     1741 aatgagtccg gagcagagac agaaaatttt caaaaagtca agaagggatt ttgattataa
     1801 taaccctaca cgaaaatgtt cagtttgcta tacgctgtca ggatggcatt gttacaaatg
     1861 taatgcagat ttttgtgata tccattttca tgatgaaaat cacaagaaaa tatgcagctc
     1921 ttgattgaat tgaatcattt cggtgttttt tccagtgata ataaaatgac taattgaaac
     1981 caaagtaaaa taaacaatta ataatttatt cctaaatttg tgtgcggggg gtgggatttg
     2041 aacccacgaa tccctaagga acagggatct aggaacgtga atgttatcca ttctaagcat
     2101 cgcactcgct ttttgcgaga cctgcgccgt tgacctagct tggcaacccc cgcatctaat
     2161 tgtctaaccg aatgaaagtt agccgaccaa atttatctat tatttagaat atattggtgt
     2221 ttacttatga tgaataagaa atgccactat ttggtactaa cggaattaga ggagtttttg
     2281 gtcaagatct ttctcttgat ttcttactgg atattactca gtcacttgca gcttattaca
     2341 aagaaggttc cattttggtc ggaagagatg gccgaaactc aaataatatc atgtttaaca
     2401 tt
//
LOCUS       DASUMD010000171         7331 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1159955, whole genome shotgun sequence.
ACCESSION   DASUMD010000171 DASUMD010000000
VERSION     DASUMD010000171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7331)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7331)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7331
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1159955"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(4..1035)
                     /locus_tag="VFX26_04725"
     CDS             complement(4..1035)
                     /locus_tag="VFX26_04725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573813.1"
                     /translation="MFHVSVDNYGISVGNKNKTIYLDPNKQPNSGFIFISHAHTDHLY
                     KSVKENGNKIITSKITHKIATHRGYKYGSTYEEHDFRLLDSGHILGSNGILIEDELYY
                     TGDISIRKRAFMNPAIIPTAKTLIIESTFGHPDYVFPKFESTIHKANLIISEMYHQGI
                     PVILLGYTLGKAQILTNVFRHWKPLIVHDSIDEMNRLYSEFGIRMDNYLTLSEAEKNN
                     MLSSHKPWLLIAPIASCKNGFLHNIKKKYGALSIGFSGWAVKPSYKYALGLDHCLPLS
                     DHCDYNDLISVVKKCNPEKVYTFHGFAEGFAQNLRLIGFDADPLVYFRSKKGKTSVKL
                     DTFFGRSKS"
     gene            1242..1883
                     /locus_tag="VFX26_04730"
     CDS             1242..1883
                     /locus_tag="VFX26_04730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573814.1"
                     /translation="MICNQFLIINDNNNFDSQVYGQTSVTDPASLMDESANSSFNAEG
                     TINTILFLQDVSSNNTQPIVKDINTNLSSKYLLGGKWRADVINNNVTYFKSNFTMIEA
                     DGSDIHFHTIVYKPISNQPIDQGSQDRLGILLKNKSNNTQSNNTQSNNTQVFNCNVDI
                     YTNGVLEWKDVPITVSLINEKVIVMDIKDKKTLEHFLKNPIYGLINSIDLIHQ"
     gene            complement(1921..2949)
                     /locus_tag="VFX26_04735"
     CDS             complement(1921..2949)
                     /locus_tag="VFX26_04735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate--phosphoribosylaminoimidazolecarboxamide
                     ligase"
                     /protein_id="HEX5573815.1"
                     /translation="MRKIIGTLGSHCSLQVLKGAKDEGFKTLLITEKKRYHVYKRFNF
                     IDHVILVDSFRDVLKSDIQNRLNKLECILIPHGTLISTLSSDEIESINVPFFGNKFIL
                     RWEADRNLKQKLMLESKLQVPKAIKSKSEIDDLCIVKLHGAAGGKGYFLTSDQNGFEE
                     GFHKLLNDNVVTDENELYIQEYVKGVPVFLHFFYSPISGDIEFMGVDRRYESDIDGIS
                     RIPSKHQLNVPTEPTYNVIGNIPLVLRESLLEGVYQMGENFVQASERLVPPGIPGPFC
                     LEGVYTKDAKFITFEFSARIVAGTNLYVSGSQYSEFLFQNGMSMGRRMALEIKNAISK
                     RKLDRVLT"
     gene            complement(3029..3289)
                     /locus_tag="VFX26_04740"
     CDS             complement(3029..3289)
                     /locus_tag="VFX26_04740"
                     /inference="COORDINATES: protein motif:HMM:TIGR00327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase SEC61 complex subunit gamma"
                     /protein_id="HEX5573816.1"
                     /translation="MHSKFVYNIDRFKYSNNAIKCEFLYSVQQKVQQKVVEIIQTLKL
                     AKKTSKDDYMTHLRLVLLGIGIVGGIAFVIKLIAEFLTFSGE"
     gene            complement(3586..4038)
                     /locus_tag="VFX26_04745"
     CDS             complement(3586..4038)
                     /locus_tag="VFX26_04745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEX5573817.1"
                     /translation="MQKFDDLDMKILSELCKNANISVPRLSKILSTNSSVLYSRIKRL
                     YKRNLIQKSTIIVNEPLLGINVKAVVGINRDPKLKEEIHIALLKIFQIISISEVTGRF
                     DILVTISATTLEELHNVVIKQIGKIEGVQNTETFVEMQRTEKERIFTT"
     gene            4313..4720
                     /locus_tag="VFX26_04750"
     CDS             4313..4720
                     /locus_tag="VFX26_04750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018039288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX5573818.1"
                     /translation="MLLPSEIESKLLIPAVRAILSKELVIEKGLKEEEVARMLGITQA
                     AVSNYLRGTRGDNELISKLMSLSEIMSMIKEIGDDLSTNRAYTAKTLSKFIALCNYMR
                     YSLIICDAHHSLERNIDEKVCEQCKIILTGSQQ"
     gene            complement(4742..6031)
                     /locus_tag="VFX26_04755"
     CDS             complement(4742..6031)
                     /locus_tag="VFX26_04755"
                     /inference="COORDINATES: protein motif:HMM:TIGR00306.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEX5573819.1"
                     /translation="MSENQDFRILYVLLDGIGDLPNPDLNGKTPLEAAKTPNIDSLAR
                     KGKMGQVISVGKGISPQSDIAVFNMLGYDFQGKKYAGRGIVEIIGSGVDFRDGDLALR
                     GNFATLDNSKIIDRRAGRDIIKQEASTICSFLEDNIKFDDPDISVKITPTISHRVIIK
                     FRHSKKSLSEKITNTDPAYGKLNGIGIAKTDVDDMVVQESESEDNSESSILSAKIVNE
                     FTRKSISLLKEHPVNLNRISNNKKPMSIILLRDAGNSVPHLQPINEKYGISTSCLVDM
                     PVEIGIAKMIGMDLFCSQKIDDYKQKGKDVAKILNSYNLVYVHIKGPDEYGHDGDASG
                     KMSNIELIDENFFGEFLKTVTKEHVVVISGDHSTPCIKKSHSDDPIPLLISGNGIKSD
                     GSQRFTESWASNGSIGTLKGSEVISNVLNMISTQKKK"
     gene            6153..6440
                     /locus_tag="VFX26_04760"
     CDS             6153..6440
                     /locus_tag="VFX26_04760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit F"
                     /protein_id="HEX5573820.1"
                     /translation="MAVGSRIFVTSFQLAGVEGVKVESASEALHHINNLDSVSDVGLV
                     LISEDIGKEIRTQLTNIRANRPIPLIFELPAPGSSKENVDYRALLKQILGV"
     gene            6586..>7331
                     /locus_tag="VFX26_04765"
     CDS             6586..>7331
                     /locus_tag="VFX26_04765"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX5573821.1"
                     /translation="MLLIVLLGIILAINIGILACWSYFLVLITWSISKSPKLEWSARY
                     RIKSKPKISIIVPARNEEGKISKCLQSLLSQDYDNYEVIAIDDSSTDKTLSIISELSK
                     KNHRLIPVKSPPKPDDWVGKSWACFQGYQKSSGKILLFTDADTVHRSDALSSAVNTMV
                     HDELDALTLVPKLLCSDIITKFTLPVLSVFLHTRYSPLRVNNPKNKIGYFFGSFYLIS
                     KKNYEKIGTHEQVRQELVEDGALGRRVKEQ"
BASE COUNT         2381 a         1286 c         1211 g         2453 t
ORIGIN      
        1 agttcaagat tttgatctac caaaaaaagt gtcaagtttt actgaagttt tgcctttttt
       61 acttctaaag taaacaagcg ggtctgcatc aaaaccaatt aaacgtaggt tttgtgcaaa
      121 accttctgca aatccgtgaa aggtatatac cttttcagga ttgcatttct ttactacaga
      181 gattagatcg ttgtaatcac agtggtcgct taaaggtaaa caatgatcta atcccaacgc
      241 atatttgtaa gatggcttta cagcccatcc gctgaatcca atagatagag cgccatattt
      301 tttcttgata ttatgtagaa atccattttt gcatgatgct ataggagcta tcaataacca
      361 tggcttgtga gaagagagca tattgttttt ttctgcttcg gacaaagtaa ggtaattatc
      421 cattctgatc ccaaattctg aataaagtct attcatttcg tctattgaat cgtgtacaat
      481 taacggtttc caatgtctaa atacatttgt tagaatttga gcttttccta gagtgtatcc
      541 taataaaatg actggtatac cttgatgata catttctgaa attattaaat tagccttgtg
      601 aatggtgctt tcaaattttg gaaaaacata atcaggatga ccgaaggtag actctattat
      661 cagagttttc gctgtgggta taattgccgg attcataaaa gctctttttc ttattgaaat
      721 atcccccgta tagtacaact catcttctat aaggattcca tttgatccaa gaatatgtcc
      781 ggaatccagt aatctgaaat catgttcttc atacgtactt ccgtatttgt atccacgatg
      841 tgtagcaatc ttgtgagtta tttttgaagt gataatctta ttaccgtttt ctttaacgct
      901 cttgtataaa tgatcagtat gtgcatgaga aataaaaatg aaaccagagt taggttgttt
      961 attaggatca aggtaaattg ttttgttttt gttgcctaca gatatgccat aattgtcaac
     1021 ggaaacatga aacatcagtc tcattgattt tacgatggta tattaatttt agtacatcga
     1081 cactccgtta taactatttt tgaaattaca gttgttccaa atcctttctt tatccaaaaa
     1141 tcatcgaaag taaaatttaa gttatgttaa atttctaatt ttgagtaatg atactgcacc
     1201 gaaattggat ttttatttcc atttttaatt taatctcatt tatgatttgt aatcaattct
     1261 taattattaa tgacaataat aattttgatt cacaagtgta tggacaaact tctgttactg
     1321 atccggctag tctgatggat gaatcagcaa attcatcttt caatgctgaa ggaacaataa
     1381 acaccatttt gtttttgcaa gatgtatcca gtaataatac tcaacccatt gtcaaggaca
     1441 tcaatacaaa cctatcttcc aaatatcttc tgggtgggaa atggagggct gacgtaataa
     1501 ataataatgt aacttatttc aagagtaact ttacaatgat tgaagctgat ggaagcgata
     1561 tccattttca tacaattgtt tataagccaa tctcaaatca gccaattgat caaggttcac
     1621 aagatcgact cgggattttg ctaaaaaata aaagtaacaa tactcaaagt aacaatactc
     1681 aaagtaacaa tactcaagtt tttaattgca atgtagatat ttatactaat ggagttttgg
     1741 aatggaaaga cgttcctata acagtatcac tcataaatga aaaagtgata gtgatggata
     1801 tcaaagataa aaagactttg gaacacttct tgaaaaaccc tatttatggg ttgataaatt
     1861 caatagatct tattcatcaa taatcttgtt gaaggcaatc gaagcgaaat cgtggattta
     1921 ctacgtgagt actctatcta gtttcctttt acttatggca ttttttattt ctaatgccat
     1981 tcttcttccc atactcatgc cattttgaaa taggaactct gaatactgag aaccggacac
     2041 atacagattg gttccggcaa caattcttgc ggaaaattca aaggtaatga attttgcatc
     2101 cttagtgtat acaccttcca ggcaaaaagg ccctgggatt cccggaggga ctagcctttc
     2161 ggaggcctga acaaagtttt ctcccatttg gtacactccc tcaagaagtg attcccttag
     2221 aactagtggg atattcccaa tcacgttgta ggtaggttct gttggcacgt taagctgatg
     2281 tttcgatgga atgcgcgaaa taccatcaat atcggattcg tatctcctat ctacgcccat
     2341 gaattcgatg tctcctgaga ttggagaata aaagaaatgg aggaaaacag gaactccctt
     2401 tacgtattcc tgaatgtaaa gctcattttc atcggtaacc acattatcgt ttaagagttt
     2461 gtggaatccc tcttcgaaac cgttctgatc agatgtaaga aaatatcctt tacctccagc
     2521 agctccatgt aacttcacta tacaaagatc atcaatttcg cttttagatt ttatcgcttt
     2581 tggaacttgt aattttgatt ctaacattag tttttgctta agatttctat ctgcctccca
     2641 tcgtagaatg aatttattac caaaaaaagg tacattaata ctttctattt catcagaact
     2701 taaagttgaa attaaagtac catgtggtat aaggatacat tccaatttgt ttaatctgtt
     2761 ttgaatatcc gactttagaa catctctaaa actgtcaact aggataacgt gatcaataaa
     2821 gttaaatctc ttgtacacat gatatctctt tttttcagtt atcaatagag ttttaaatcc
     2881 ttcatccttc gcgcccttta gcacctgaag cgaacagtga gatccaagag tccctatgat
     2941 ttttcgcaaa ttagctctcg tataggacta ctacgactag taaattaata ttattcgaaa
     3001 tcgagtttgt tctgacaaaa taatccgttt actctcccga aaatgtcaga aattctgcaa
     3061 tcaatttaat gacaaaagct attccaccta ctatgccaat acctaataaa actagcctga
     3121 ggtgggtcat atagtcatct ttgctagttt tttttgcaag tttcaatgtc tgaattattt
     3181 ccactacttt ttgttgtact ttttgttgta cggaatacaa aaattcacat tttatcgcat
     3241 tattggagta tttgaatcta tcgatattgt aaacaaattt tgaatgcatt catctaaaaa
     3301 tgggccaact gactataagt ttctgataaa acctcctatt aacaagaatt accaattgtg
     3361 gaacgtactc gagcacatga attttcaatt ggttgatgct ggtcgatggg tttgaaatac
     3421 ctagttagtg aaatatcaaa cactgctcaa gacaaaatat acgaaacaat gtgttattgc
     3481 attacttact tgtaaataaa atcttctaaa tatgttactg tatcatggta cagaagatca
     3541 ataagccaac gattttcttc ctatcttgaa aagtaattgg ttaaatcatg tagtaaaaat
     3601 acgctctttc tccgtcctct gcatctcgac aaacgtttca gtattctgaa ctccttcgat
     3661 ttttccaatc tgttttataa caacattgtg gagttcttcg agagtagtag cactaatggt
     3721 caccaagata tcgaacctgc cagttacttc agaaattgag attatttgaa atattttcaa
     3781 taatgctatg tgaatttcct cttttaattt tggatccctg tttattccaa ctacggcctt
     3841 gacatttatt cctaaaagag gttcatttac aattatagta gatttttgga ttaaattcct
     3901 cttgtatagt cgcttaattc tgctgtatag gacagatgaa ttagtggata atattttact
     3961 caatcgtggc acagaaatat tagcattctt acaaagttct gacaagattt tcatgtctaa
     4021 gtcgtcgaat ttttgcaatt tctagtcaat aatattctca agtattaata aatgtaattt
     4081 ttggtcaaaa ttccgtatta ttacacatcg tgctaaaaag atttaattaa tttgacattt
     4141 ccttccaaat ctcattccac aaggcatcaa gaaatgacaa attgggaata atgaaagatg
     4201 tcaaatattg aaaaataaca cgtacaaaaa aaataatgga tagctttgtc taatccgctc
     4261 aatgagcaaa agaaactata tatatttaaa atgccatatt taggcacacc taatgctact
     4321 tccatcagaa attgaatcca aattactaat ccctgcggta agagctatat tatcaaaaga
     4381 gctggtaatt gaaaaagggc taaaggaaga agaggtagct agaatgttag gaattactca
     4441 agcagccgta agcaattatt taagaggcac acgtggagat aatgaattaa tctcaaaact
     4501 aatgtcacta agtgaaatta tgagtatgat taaagaaatt ggcgatgatc tttcaaccaa
     4561 tagggcatat actgcaaaaa cattatcgaa atttatcgca ttgtgcaatt atatgcgata
     4621 ttcacttatc atttgcgatg cacatcatag tcttgaaaga aatattgatg aaaaagtatg
     4681 tgaacaatgc aagattatcc taactggaag ccagcagtga gtataagaca agattagatt
     4741 tctatttctt cttttgtgtg cttatcatgt tcaatacatt tgaaattact tccgatcctt
     4801 tcaaagtacc aatggaacca ttacttgccc aggattctgt aaaacgctga cttccatcac
     4861 ttttgatacc gtttcctgaa atcaataatg ggattggatc atctgaatgt gattttttaa
     4921 tacaaggagt agagtgatcg cctgaaatta cgactacatg ttccttagtt acagttttca
     4981 aaaattcacc aaagaaattt tcatctatca attcaatgtt agacatttta cccgatgcat
     5041 ctccatcatg tccatattca tcaggtcctt ttatgtgaac gtagacaaga ttatatgagt
     5101 taaggatttt tgcaacatct tttccctttt gtttataatc atcaattttt tgtgaacaaa
     5161 atagatccat accaatcatt tttgcaattc cgatttctac aggcatatcg actaggcaag
     5221 aagtagaaat gccatacttt tcattaatag gttgaagatg aggaacacta ttaccagcat
     5281 ctcgcaatag tattatactc attggcttct tgttgtttga aattctgtta aggtttactg
     5341 ggtgttcctt caatagagaa attgacttac gggtaaactc attaacgatt tttgctgaca
     5401 agatcgatga ttcagaattg tcttctgatt cagattcctg gacaaccata tcatcaacat
     5461 cagttttagc aatcccgata ccattcaatt taccatatgc aggatctgta ttagttatct
     5521 tttcagataa cgatttcttg ctgtgtctaa atttaataat tacacgatgg gagattgtag
     5581 gggttatctt aactgagata tctggatcgt caaattttat attgtcttcc agaaatgaac
     5641 atatagtgct tgcttcttgc ttaatgatat cccggcctgc acgcctatct attattttgc
     5701 tgttatctaa cgtcgcaaaa ttacctctta aggccaagtc gccgtcacgg aaatcaactc
     5761 cggatccaat tatttccaca attcctcttc ctgcatattt ttttccctga aaatcataac
     5821 ctagcatatt gaatactgcg atatcagatt gaggggatat tcccttgcct acgcttatca
     5881 cctgacccat tttccccttt cttgcgaggg aatcaatatt gggagtcttt gctgcctcta
     5941 gtggagtttt gccattcaag tccggatttg gtaggtcacc aattccatca agtagaacgt
     6001 ataatattct aaaatcctga ttttcagaca atgctgaaag agataaaaaa ccatgattta
     6061 tctgtaatgt aaatcagacc ttgttcatga aaatatcata caaaggatta aaaagaactg
     6121 catgattagg tgtttaagac aaattgagaa taatggctgt tggaagtaga atttttgtaa
     6181 caagctttca attggccggt gtcgaaggcg ttaaggtaga atcagcatcc gaagctcttc
     6241 atcacatcaa caacctagat agtgttagtg atgtaggact tgttctcata agtgaagaca
     6301 ttggtaagga aattcggact caactaacca atattagagc caatcgccca attccactaa
     6361 tttttgaatt acctgcacct ggtagtagta aagaaaatgt ggattacagg gcgttactaa
     6421 agcagatttt gggtgtatga tccctttaat attgagaccg gcataataaa aagagtatga
     6481 atcagcacct gttccaaatt aattagtttg atagaatgca cgtcgttatc atccaaccta
     6541 attttaaacg tatagtctat atttagaata atttaacgat accaattgct ccttattgta
     6601 cttcttggta tcatattagc aatcaatatt ggtatccttg catgctggtc ctattttctt
     6661 gttttgatca cctggtcaat ttcaaaatca ccaaaattag aatggtcagc aagatataga
     6721 ataaaatcaa aacctaagat cagtatcatt gtaccagcaa ggaatgaaga aggaaaaata
     6781 tcgaaatgtt tacagtcatt gttatcgcaa gactatgata actatgaggt aatcgcaatt
     6841 gatgattcat ctacagataa gacgctctca attatctcag aattatctaa aaaaaatcat
     6901 agattgatac cagtaaagtc tccgcctaag ccggatgatt gggttggaaa gagttgggca
     6961 tgtttccaag gctatcaaaa atcatctgga aaaatccttt tgtttaccga cgctgatacc
     7021 gtacacagat cagatgcttt gtcatccgca gttaatacaa tggtgcatga tgagttagat
     7081 gcccttacat tagtgcctaa gcttttgtgc tcggatatta ttacaaaatt caccttaccc
     7141 gtactgtctg tatttctaca tacaagatat tcaccacttc gtgtaaataa tccaaagaat
     7201 aagatcggct atttctttgg tagtttctat ttaatttcca aaaaaaatta tgaaaaaatt
     7261 ggaactcatg aacaagtacg tcaagaatta gttgaagatg gcgcattagg acgaagagta
     7321 aaagaacaaa g
//
LOCUS       DASUMD010000172         6224 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_828177, whole genome shotgun sequence.
ACCESSION   DASUMD010000172 DASUMD010000000
VERSION     DASUMD010000172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6224)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6224)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6224
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_828177"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..673
                     /gene="larB"
                     /locus_tag="VFX26_04770"
     CDS             <1..673
                     /gene="larB"
                     /locus_tag="VFX26_04770"
                     /inference="COORDINATES: protein motif:HMM:NF033503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="nickel pincer cofactor biosynthesis protein
                     LarB"
                     /protein_id="HEX5573822.1"
                     /translation="RELRSGIPEVILAQGKELKDLYKIILATVSKKRFAVISKVKPEY
                     MEKLRKKFEKENLKVEMGINTILVSSKSHKFPTKNGKVGILCAGTSDIKIAEEAKIMA
                     QVMGSETVVEYDVGIAGIHRTLKGISKMINSQVHIIIVVAGMEGALGSFVSSVTDIPV
                     IGVPTSIGYGFGSNGVAALASMLQTCSMGMTVVNIDNGIGAGAFAAMVANKMSTEPKP
                     KMKAI"
     gene            743..1381
                     /locus_tag="VFX26_04775"
     CDS             743..1381
                     /locus_tag="VFX26_04775"
                     /inference="COORDINATES: protein motif:HMM:NF006342.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HEX5573823.1"
                     /translation="MVYTSTLRRIRERKTNYRKREKLLIGKKDFVTVNVSDQNVSAQL
                     IRPDLLGDKVMASVHSNELLSYGWKGSRKNIPSCYLVGLLLGKKCVQKKITRAILYIG
                     KRNFTTKIAACLKGLSEAGLEMPFSEDIIPSEERIQGNHIADYAKKIKPNDDLYKSRF
                     SSNLGLGLEPEKYPSHFSEVKDRIVNDKSEKKSDKSSKATKSKSSKKKGDSK"
     gene            1378..1995
                     /locus_tag="VFX26_04780"
     CDS             1378..1995
                     /locus_tag="VFX26_04780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HEX5573824.1"
                     /translation="MSNPRSNEQATVWKPRTALGQMVIENKISSMEQIYENGMRIQES
                     EIVKHLLPDIKSQVVHVGIVQKQTDAGEMTRFSALVAVGNEAGWFGIGMGKASQMRIA
                     IDKATINSYLHIIPVKLGCGSWECRCTQLHSIPFNVRGRGGSVKVEILPGPRGLGLVA
                     GENIKNLLKLAGIKDAWTKSFGSTNTMTSTAMAIFNALNSTYITG"
     gene            2000..2464
                     /locus_tag="VFX26_04785"
     CDS             2000..2464
                     /locus_tag="VFX26_04785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HEX5573825.1"
                     /translation="MALLVVRMRGTVNVPYWALTTLRNLYLNKKFSATLVPETTNYLG
                     MLRKINQWVAWSKADSDIIKILIEKRGKKKNPTLESKDENKSKSDHKGIDELVDIIVN
                     DKIKFSDQNNIKPWFSLNPPRGGFKRNTKKQFSDGGILGNNKELLEIVKRMV"
     gene            2537..2971
                     /locus_tag="VFX26_04790"
     CDS             2537..2971
                     /locus_tag="VFX26_04790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uL15 family ribosomal protein"
                     /protein_id="HEX5573826.1"
                     /translation="MATRLRKSRRHRGTRYCGWGQIGQHRQSGSRGGIGGGGKHKHFW
                     IRTVIEEPDHFGHDTLNSYSRFLVKKWINLRDLKNLSLRFSGRKEDKIVLDLRSLGIQ
                     KLLGGGNISESYVIKVAQASASAKKKVESAGGSIISNDHSAQ"
     gene            2952..4382
                     /gene="secY"
                     /locus_tag="VFX26_04795"
     CDS             2952..4382
                     /gene="secY"
                     /locus_tag="VFX26_04795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HEX5573827.1"
                     /translation="MTTVHNESIVRTVVKKVSAYIPQVEKPKKKIGLSEKFIWCGIAL
                     FAYLVMGQIPLYGVTDSPQFDFLAFARVIFAAQQGTLLELGIGPIVTAGLLMQLLKGS
                     ELIKLNFKDPDDRSLFTSATKIVTIIVIIAEGALYGVSVYGGLLAHPSLIPILIGQLI
                     GASIVVMYLDELIQKGWGLGSGISLFIMAGVAQGILWSIFSPVPAQDGPVGVIPFIIH
                     SAINGDISDALFRSGQLPSIFGLIVTSLVLLALVYTQGIHVDIPIVSTKYRGFTAVYP
                     IKLLYTSNIPVILASALLANAVFMGQMLWANYNPDNSNPLFNGIAQFDPQSSQQPTGG
                     VLYYTTSPQSFDKALADPVRTILYIIFMTAIVTVFGRLWVELGGLSAKAAAKNLLDAD
                     VQVPGFRRTQSSVQTLLNKYIPAVTIAGGIIIGLLASVSNVLNVFGTGIGILLMVDIL
                     VNYYNLLVREQVDIHMPKLAALLGRT"
     gene            4369..4959
                     /locus_tag="VFX26_04800"
     CDS             4369..4959
                     /locus_tag="VFX26_04800"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: protein motif:HMM:NF003122.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HEX5573828.1"
                     /translation="MEGPRKKTVIIVGVPGVGKSTIISNATTTLQKKGTTLNTVVFGS
                     VMFEEAKKLGINDRDQIRKQTIDVQQRLQNMTADHISSLNDSIVVVDTHLFIKTQSGY
                     YPGLPMNLILKLNPERLILITANSEEILNRRKNDSTRTRDLISVDEIKRDIEVSLSMI
                     SSLSILTGAPFEIIYNHDNMIDSATSLLVELLKKSP"
     gene            5035..5619
                     /locus_tag="VFX26_04805"
     CDS             5035..5619
                     /locus_tag="VFX26_04805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidylate kinase family protein"
                     /protein_id="HEX5573829.1"
                     /translation="MKSRSIRKISVVISGNAAVGKTTLAQALAREFGFKLYNGGDILK
                     EIARQQGYTISGNDWWDSNEAIGFMKERKKNSIFDRQVDEKLIKIAKKGNVIIASHTL
                     PWLTSEPISFWLSASQRKRSERMSIRDKITIVEAIDIVKMRDRENKKIYKKIYGSEFG
                     ENLEVFDFMINTELLSLESLVYLCKEIIKKMTIQ"
     gene            5636..>6224
                     /locus_tag="VFX26_04810"
     CDS             5636..>6224
                     /locus_tag="VFX26_04810"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-guided pseudouridylation complex
                     pseudouridine synthase subunit Cbf5"
                     /protein_id="HEX5573830.1"
                     /translation="MTLRLDALEIINDDVTSTRYGYHPDSRPLDVLLDNGIILLDKPS
                     GPTSHELVAWTKRILGITKAGHSGTLDPGTTGLLPIGLGDATKALSILLLGPKEYYAI
                     ARIHHQKDLGLIDRVLGQFTGEIYQRPPQRSSVKRSTRVRRIYELQRLESVNNILLLR
                     VLCEAGTYIRKLVYDIGEVLGTGATMFELRRTRVSV"
BASE COUNT         2136 a          993 c         1347 g         1748 t
ORIGIN      
        1 gcgggaatta agaagcggaa taccagaagt tattcttgct caaggaaagg agctgaaaga
       61 tctctataaa attattctcg ctacggtatc caaaaaaaga tttgctgtca taagtaaagt
      121 taagccagaa tacatggaga agttacgtaa aaaatttgaa aaggaaaatc tgaaagttga
      181 aatgggaatt aacacgatat tagtgtcctc caaatcccat aaatttccta caaagaatgg
      241 caaagtaggc atactttgtg ctggaacttc ggacattaaa attgctgagg aagcaaaaat
      301 tatggcgcaa gtaatgggca gcgaaactgt ggtagaatat gacgtaggta ttgcaggaat
      361 tcatcgaaca ctgaagggta tctcgaagat gataaactct caagttcaca taataattgt
      421 agtggctgga atggagggtg cattaggttc ttttgtttct tcagtaactg acataccagt
      481 aattggagtt ccaacttcta tagggtacgg atttggatca aatggggttg ctgcgttggc
      541 atctatgctt caaacttgtt caatgggtat gaccgtcgta aatatcgata atggaatagg
      601 cgcgggtgcc tttgctgcga tggtagcaaa caagatgtca accgaaccta aacccaaaat
      661 gaaagcaata tgatgaagat ttataagtaa ttcataatct tgtcaaattt ataaatagga
      721 tagataggtg aattttcagt ttatggttta tacttccaca ctcagaagaa taagagaaag
      781 aaaaacaaat tacagaaaga gagaaaaatt gcttattggt aaaaaggatt ttgtaaccgt
      841 taatgtaagt gatcaaaacg tttcagctca actaataaga ccggatctcc tcggagacaa
      901 agtgatggca tctgtacata gtaacgaatt actatcatat ggttggaaag gttcacgcaa
      961 gaatatacct tcatgctacc tagtcggtct tttattaggt aaaaaatgtg tccaaaaaaa
     1021 aattacgcga gcaatattgt atatcggcaa gagaaacttt acaacaaaaa tcgcagcatg
     1081 cttgaaaggt ttgtctgagg caggattaga aatgccattt tcagaagata ttattccttc
     1141 tgaagaaaga attcaaggaa atcatattgc agattacgca aaaaaaataa agccaaatga
     1201 tgatctttac aaatcacgat tttcgtcaaa cttaggatta ggtttggagc cagaaaaata
     1261 tcccagtcat ttttcagaag taaaggacag gattgtaaat gataagagtg aaaagaaatc
     1321 agataaatcg tctaaggcta ccaagtcaaa gtcgtccaag aaaaaaggag attcaaaatg
     1381 agcaatccta gaagcaatga acaagcaaca gtatggaagc cacgcactgc tctgggacag
     1441 atggttattg aaaacaagat tagttcaatg gaacagattt atgagaatgg tatgcgtatt
     1501 caagaatctg aaatagtaaa gcacttgctt cctgatatta agagccaagt agtgcacgta
     1561 ggaatagtac agaagcaaac tgatgctgga gaaatgacaa gatttagtgc gctcgttgct
     1621 gttggtaacg aagcaggatg gtttggcatc ggaatgggta aggcatctca aatgagaatt
     1681 gctatagaca aggcaacaat taactcctat cttcacataa ttccagtgaa attaggttgt
     1741 ggcagttggg aatgccgatg cacgcaactg cattcgatac ctttcaatgt gcgaggaaga
     1801 ggcggaagtg tgaaagtaga gattctacca ggaccaagag gattaggact tgtggccggt
     1861 gaaaatataa aaaatctatt aaaactagcc gggataaagg acgcatggac aaaatcattc
     1921 ggatctacca atacaatgac ttctactgct atggcaatat ttaatgctct aaactcaact
     1981 tacatcacag ggtgaataaa tggcattatt agtagttaga atgagaggaa ctgtaaatgt
     2041 gccatattgg gcactgacta cccttaggaa tctctatttg aacaagaaat tttctgccac
     2101 tcttgttccc gagacaacga actatttggg gatgttaaga aagataaatc aatgggtagc
     2161 ttggtcaaaa gcggattcag atataataaa aatcttgatt gagaaaagag gtaaaaagaa
     2221 aaacccaaca ttagaatcaa aggatgaaaa taagagtaaa tctgaccaca agggcattga
     2281 tgaattggta gatatcattg taaatgataa aataaaattc tcggatcaaa ataatattaa
     2341 accttggttt agcttgaatc cacccagagg tggttttaaa agaaatacta aaaaacagtt
     2401 ctcagatggt ggtatccttg gcaataacaa ggaattgctt gaaattgtaa aaagaatggt
     2461 atgactttgt tgaagaaaaa atgagtttta catttatatt tacactctta ttttgattgt
     2521 atagggtata tcatacatgg ccactagatt gagaaaaagc cgcagacatc gaggtacaag
     2581 atattgcgga tggggtcaaa tagggcagca cagacaatct ggtagccgtg gtggcatagg
     2641 cggaggagga aaacataagc atttttggat tcgaactgta attgaagaac ccgaccattt
     2701 tggacatgat acactaaact catatagtcg atttttagtc aaaaaatgga ttaatttgag
     2761 agatcttaag aatctctcac ttagattcag tggtagaaag gaagataaaa ttgttctaga
     2821 tcttcgatca ttaggaattc aaaaactctt gggcggcggc aacattagcg aaagttatgt
     2881 aattaaggta gcacaagcat ctgcaagtgc taaaaagaaa gtagagtcgg caggaggtag
     2941 tataatttca aatgaccaca gtgcacaatg aaagtattgt aagaacagta gtcaagaaag
     3001 tctcggctta cattcctcaa gttgagaagc ctaaaaagaa aattggatta agtgagaaat
     3061 tcatttggtg cggaattgca ttatttgcct accttgttat gggtcaaatt ccactttatg
     3121 gcgtaacaga ttcgccgcaa tttgatttct tggcatttgc gagagtcata tttgctgcac
     3181 aacaaggaac attactagaa ttaggaatag gtccaatcgt tactgcaggt ctgttgatgc
     3241 agctattaaa gggctcagag ttaattaagc taaatttcaa ggaccccgat gataggtctc
     3301 tcttcacatc tgcaacaaag atagttacta ttatcgtcat tattgcagag ggtgcacttt
     3361 atggtgttag tgtatatgga ggtttgctgg ctcatcctag tcttattcct atcttgattg
     3421 gacaacttat tggggctagt attgttgtaa tgtaccttga cgaactaatt caaaaaggat
     3481 ggggactagg ttctggtatc agtcttttca ttatggcagg agttgctcag ggaattttat
     3541 ggagtatatt cagtccggta cctgcacaag atggaccggt aggagtaatt ccattcatca
     3601 tacattctgc tattaacgga gacatctcag acgcactctt tagaagtggt caactcccca
     3661 gtatctttgg tctaatagtt acttccttag ttcttttggc actcgtgtat actcagggta
     3721 ttcatgtgga tatacctata gtgtctacaa agtatcgagg gtttacagct gtatatccta
     3781 taaaattgct atatacgtct aacattccag ttattttggc ctcggcatta ctagcaaacg
     3841 ctgttttcat gggacagatg ctctgggcaa actataatcc tgacaattca aatccattgt
     3901 ttaacgggat tgcccagttc gatccacaaa gttcacaaca accaactggc ggagtcctgt
     3961 attataccac atctccccaa agttttgata aagcgcttgc tgatccggta aggacaatac
     4021 tgtatatcat atttatgaca gctattgtta ccgtatttgg tagactgtgg gtggaattag
     4081 gtggattatc tgcaaaggcg gcagcaaaga atttgttgga tgcagatgtt caagttccag
     4141 gctttagacg aactcaaagt tcagtccaga cactactgaa taagtacata ccagctgtta
     4201 caatagcagg aggaataata atcggactct tggcatcagt gtcaaatgta ttaaatgtat
     4261 ttggtacggg aattggtata ctgcttatgg tcgatatatt ggttaattat tataacctcc
     4321 tagtccgaga acaagtagat atccatatgc ctaaattggc ggcactcctt ggaaggacct
     4381 agaaaaaaaa cagttattat tgttggtgtt cctggagtag gaaagagcac aataatttct
     4441 aatgctacaa caacgttaca aaaaaaagga acgactttga acacagtggt ttttggatct
     4501 gttatgttcg aggaagctaa aaaattggga ataaatgata gagatcagat aagaaaacaa
     4561 acgatagacg tacagcaaag attacaaaat atgaccgctg atcatatctc cagcctgaac
     4621 gattcgatag tggttgttga tacccatctt tttataaaaa cgcaatcagg ttattatccg
     4681 ggattaccaa tgaatcttat tttaaagcta aatcctgaaa gacttatttt gataaccgca
     4741 aattccgaag aaattctaaa tagaagaaaa aatgacagta caaggacaag agatttgatt
     4801 tcagttgatg aaatcaaaag ggatatagaa gtttctttgt ccatgatttc atcgctttct
     4861 attttgacag gtgctccatt tgaaattatt tataaccatg acaacatgat agattctgcc
     4921 acatcacttt tggtggaatt actaaagaaa tctccctgat cgacgaatac caaaatgtgg
     4981 gtaagataga tattgttatt gggttgacta tataacacat caagtgacaa agaattgaaa
     5041 tcgaggagta tacggaaaat tagtgtagtt atttcaggga atgcagctgt aggcaagact
     5101 acactggccc aagctcttgc aagggaattc ggattcaagt tgtataatgg gggggacatc
     5161 ctgaaggaaa tagcacgtca acaaggttac acgatatcgg gaaatgattg gtgggattct
     5221 aatgaagcga taggttttat gaaagagcgt aagaagaact caatttttga caggcaggtg
     5281 gatgaaaaat taataaagat tgctaagaaa ggtaacgtta ttattgctag tcatacactt
     5341 ccttggttaa ctagtgaacc aattagtttt tggctaagtg cttctcaacg gaaaagatct
     5401 gaaagaatgt caatacgcga caaaatcaca atagtagagg ctatcgacat tgtaaagatg
     5461 agggataggg aaaataaaaa aatctacaag aaaatttatg gttcagaatt cggagaaaac
     5521 cttgaagtgt ttgatttcat gattaatact gaacttctct cgcttgaatc acttgtttat
     5581 ttgtgtaagg aaattataaa gaagatgacg attcagtaat atactaggac acaaaatgac
     5641 attaagacta gatgcattag agatcataaa tgatgatgtt actagcacaa ggtatggcta
     5701 tcatcctgat tctagaccat tggatgttct tttggataat ggaattatct tgttagataa
     5761 accttcagga cctactagcc atgaattggt tgcctggaca aaaagaatcc ttgggataac
     5821 taaggcgggt cacagtggta ctcttgatcc aggtactacc ggtcttctac caatcggatt
     5881 aggggatgct accaaggcac tatcaatcct gttgttagga ccaaaagaat actatgctat
     5941 tgcgaggatt catcaccaaa aggaccttgg tttaattgat agagtgcttg gacaatttac
     6001 tggagagatt taccaaaggc ctcctcagcg atcttccgtc aaaagatcca cccgtgttag
     6061 acgaatatat gaattacaaa gactagaaag tgtaaacaac atacttctgt tacgtgtgct
     6121 gtgtgaagca gggacttaca ttagaaaact cgtttatgat atcggggaag ttcttgggac
     6181 aggagctact atgtttgaat tacggaggac aagggtaagt gtct
//
LOCUS       DASUMD010000173         3826 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_386673, whole genome shotgun sequence.
ACCESSION   DASUMD010000173 DASUMD010000000
VERSION     DASUMD010000173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3826)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3826)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3826
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_386673"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..290)
                     /locus_tag="VFX26_04815"
     CDS             complement(<1..290)
                     /locus_tag="VFX26_04815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573831.1"
                     /translation="MGHATIEWVYVGVVISLLTWVGVESWNVERIVEHVPAEAETIKV
                     TGQQWFWTFEHQDGKKETGELHVKQGVPYKFELVSKDVVHDFNVPDYTILMDA"
     gene            complement(293..586)
                     /locus_tag="VFX26_04820"
     CDS             complement(293..586)
                     /locus_tag="VFX26_04820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme transporter CcmC"
                     /protein_id="HEX5573832.1"
                     /translation="MSSDLGQGNLMSPKSNVWLILLLFSPLVVIVLSSFDTVFAQESE
                     EYVIRRVEIWALFYRLMVAAFVVGAVVQGAIVYVCWRFRESHKKNKIREIEGV"
     gene            complement(630..1253)
                     /locus_tag="VFX26_04825"
     CDS             complement(630..1253)
                     /locus_tag="VFX26_04825"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF012521.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEX5573833.1"
                     /translation="MPHIVFVRHGEADNNVKRLLVGRHIESHLTECGIQQVKDTGQHL
                     KKLKIDRVCVSPVTRAVETAKIICEINDLEYQTDERLYEIELGDLVGMNYDEVIEKHG
                     NLFLKFYSGDDPILDSYGIESFSAVKKRIQNLLDETMRNYPDKNLLFVTHLDPIKAAI
                     SIMLGLPPESLYGWHIRNASMTILKHENGILSLSGVNVMGFHRYIDE"
     gene            1425..2096
                     /gene="npdG"
                     /locus_tag="VFX26_04830"
     CDS             1425..2096
                     /gene="npdG"
                     /locus_tag="VFX26_04830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent F420 reductase"
                     /protein_id="HEX5573834.1"
                     /translation="MKISIIGGTGGMGEGFALRWVVNHDIIIGSRDAEKAIRSAEQYM
                     NTAVSSYGNSMKGTIKGADYISSARDSDILILSIPYESIKLTCDSISNNIRNDCIIVS
                     PIVPMERNDAGFTYIPFEKSMKSAAHILAENLPGKKVVSAFHTIAEVKLKNINESLDS
                     DTFVCGDDQDAITTLNQLIGEIKGLRPLYLGSLSISYQAEVLTPMLLNASKKNKIKHP
                     GIKLT"
     gene            2153..2386
                     /locus_tag="VFX26_04835"
     CDS             2153..2386
                     /locus_tag="VFX26_04835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573835.1"
                     /translation="MGILFIVMATVIALRNFYLYSTHLSVGFYLDNYTNNSVTNEKFV
                     IAMLIGGGILLYWGKFRNMRNLDNLDNDTKNFN"
     gene            complement(2432..3610)
                     /locus_tag="VFX26_04840"
     CDS             complement(2432..3610)
                     /locus_tag="VFX26_04840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEX5573836.1"
                     /translation="MKISNRISNVEYAIRDITLHARQYEKAGKKIIYLNIGDPVKYDF
                     PTPDHIKRALLDAVSSNFNYYADSEGILELREAIVNKESQKGLSVNVEDVLVTNGISE
                     GLDMVAASIVEPNSEILMPGPYYPPYASYVKFYGGKPIEFKLTEDGAPDLDDIKSKIT
                     PKARALVIINPNNPTGEVFNSKNLKQLIDVAAEHDMYIICDEIYDKLVFDREFTGIGK
                     VAKDAPVILLNGFSKVYLMTGWRCGYICMNSDCQKLENIRNNIPKLARVRIATNLPVQ
                     KAAVAALQGPQEYIAETVTKLKKRRDLVVKRLNEIDGISCKLPNGAFYTFPKILNNRW
                     KDDKDFVLNLLDKTGILTVHGSGFGELGRGHFRIVYLPKEQVLEEAMDKLSDFVNGSN
                     "
     gene            3749..3823
                     /locus_tag="VFX26_04845"
     tRNA            3749..3823
                     /locus_tag="VFX26_04845"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3784..3786,aa:Arg,seq:tcg)
BASE COUNT         1176 a          740 c          641 g         1269 t
ORIGIN      
        1 gcatccatta ggatagtata atcaggtaca ttgaaatcat ggacaacgtc ttttgaaaca
       61 agctcaaatt tgtagggaac tccttgtttc acgtgaagtt caccagtttc ctttttgcca
      121 tcttgatgtt caaaagtcca gaaccattgt tgacctgtga ccttgatcgt ttcggcttca
      181 gctggaacat gctcaactat cctttcaaca ttccaagatt ccactcctac ccatgtaagc
      241 agtgatatta caacaccgac atatacccat tcaattgttg catgacccat tcttaaacgc
      301 cctctatttc ccttatcttg tttttcttgt gactttctct aaagcgccaa catacgtata
      361 ctatagcacc ttgaactaca gctccaacaa caaaagccgc aaccataagt ctgtaaaata
      421 atgcccaaat ttcaactcgt ctgataacgt attcctctga ttcttgtgca aaaacagtgt
      481 caaatgaaga gagaactatc acaacaagag gtgagaacaa caaaaggatt aaccatacat
      541 ttgatttggg tgacatcaaa tttccttgtc cgaggtcact actcacatat atctaattta
      601 aggtttttgc aagacgaact tgtattcatt cattcatcaa tatatctatg aaatcccatg
      661 acattaaccc ctgaaagtga aaggatccca ttttcatgtt ttagaatagt cattgaggca
      721 ttacgtatat gccatccata cagactctcc ggaggaagac ccaacatgat ggatatcgct
      781 gctttgattg gatccaaatg cgtaacaaat aacaaattct tatcgggata atttctcata
      841 gtttcatcaa gtaaattctg gattcttttt ttgactgctg aaaagctttc gatgccatag
      901 ctgtcaagaa ttggatcatc tccgctgtag aatttcaaaa aaagatttcc gtgcttctcg
      961 ataacttcat cataattcat tcccaccagg tctcccaatt caatttcgta taacctttca
     1021 tcagtttggt attccaaatc atttatttca caaattatct tggcagtttc aacagctctc
     1081 gttaccgggc tgacacacac tctatcaatc ttcagttttt ttagatgctg gccggtatct
     1141 ttgacctgct gtattccaca ttctgtgaga tgtgattcta tgtgtcgccc tactagaagt
     1201 cgtttgacat tattgtctgc ttctccatgg cgtacaaaga ctatatgcgg caaaacaact
     1261 caaataaaat aaatcaagtc ttaaatttgt ttttgcgtca attaatttca tagattccaa
     1321 caaatttaaa cattttacat tttacatttt agttttcagt ccaaacttgc aatctagatt
     1381 ataaccttaa ttaggacgtt ccgacacttt atgacagata attaatgaag atttcaataa
     1441 ttggtggcac cggtggaatg ggagaaggat ttgctctcag atgggttgtg aatcatgata
     1501 ttatcatagg atctcgcgat gcagaaaaag caataagatc agcagaacag tatatgaata
     1561 cagcagtgtc atcttatgga aatagcatga aaggaactat caaaggtgct gattacattt
     1621 cttctgcaag agattcagac atcttgatac tgtctatccc gtatgaatca ataaaattaa
     1681 cttgtgattc tatttcaaat aacataagaa atgattgcat aatagtttct ccaattgttc
     1741 ctatggaaag aaatgacgct ggttttactt atatcccatt tgaaaaaagt atgaaatctg
     1801 cagcacatat tttggcagaa aatcttccag gcaagaaagt tgtttctgca ttccatacaa
     1861 tagctgaagt gaaattaaag aatattaatg aaagccttga ttctgataca tttgtttgtg
     1921 gtgacgatca ggatgccatt acaacactaa atcaattgat aggagaaata aagggcctca
     1981 gacccctcta tcttggatca ttgtctatca gctatcaggc agaggtactg actcctatgt
     2041 tactgaatgc atccaaaaag aacaagatca aacaccctgg aataaagctt acttgaatcc
     2101 ttttccaaaa agaaatgtca aaggtaagca tgccaaaaat tggatgtacg gtatgggaat
     2161 actttttatt gtaatggcta cagttattgc attgaggaac ttttatcttt attcaaccca
     2221 tttgtctgtt ggtttctatc ttgataatta tacgaacaat tcagtgacaa atgagaaatt
     2281 tgtgatagca atgctgattg gtggtggaat attactgtat tggggtaaat ttagaaatat
     2341 gaggaatttg gataatttag ataatgatac aaaaaatttt aattgagctt atcagtttga
     2401 atgaaaggag cgcttaattt caatttcaat ttcaattact accattgaca aaatcactta
     2461 gcttgtccat tgcttcttca agcacttgct cctttggaag ataaacgatt ctaaaatgac
     2521 cccttcccaa ttctccgaaa ccagaaccgt gcaccgtcag aataccggtt ttgtccagta
     2581 ggttaagaac gaaatctttg tcatctttcc aacgattatt tagaatcttt ggaaatgtat
     2641 agaatgcacc gtttggcaac ttacaggaaa taccatctat ttcgttcagg cgcttcacta
     2701 ctaaatctct tcttttcttt aatttagtta cagtttcagc gatatattcc tgcggtcctt
     2761 gcagagctgc tactgcggct ttttgtactg gaagattagt agcaatacga accctggcca
     2821 gttttggaat attatttctg atattttcta atttttgaca atcgctattc atacaaatat
     2881 atccgcaacg ccaacctgtc attagataaa cttttgaaaa accattaagt aatatcaccg
     2941 gtgcatcttt tgccacttta ccaatgccgg taaactcccg atcaaatact agtttatcat
     3001 agatttcatc gcatataatg tacatatcat gttcggcagc tacatcaatt aactgtttaa
     3061 ggttcttgct gttaaatacc tcaccggtag gattattcgg atttattatg acaagagctc
     3121 ttgcttttgg tgtaatcttt gacttgatat catcaagatc aggcgctccg tcttctgtaa
     3181 gtttaaattc aattggtttg cctccgtaaa attttacata tgaggcatag ggcggataat
     3241 atggtccggg cattaaaatc tctgaatttg gttccactat agatgcagct accatatcta
     3301 gtccttcaga aataccattg gtgacaagaa cgtcttcgac gttaacagag agtccttttt
     3361 gtgattcttt gtttactatt gcctccctta attctaagat cccttctgaa tctgcataat
     3421 aattgaaatt gcttgaaact gcatctaaca atgctctctt tatgtggtcc ggagtcggaa
     3481 aatcatactt tactggatca ccaatattca agtagattat ttttttacca gctttttcat
     3541 attgtcttgc atgtaacgtt atatctctaa ttgcatattc tacattggat attctgttgg
     3601 atatcttcaa ttaattacaa ttactgagaa attattgaga taataaattg attgttatta
     3661 attgattttc tagctcattg ctattctcaa atatagatta gttcaattga tatagaacct
     3721 tgaatttaat tttaaagtta gaaacaaagg gtccgtagcg tagccaggat atcgcggtgg
     3781 tcttcggaac cacagatcga gggatcgaag ccctccgggc ccgtta
//
LOCUS       DASUMD010000174         7007 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_55776, whole genome shotgun sequence.
ACCESSION   DASUMD010000174 DASUMD010000000
VERSION     DASUMD010000174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7007)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7007)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7007
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_55776"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..769)
                     /locus_tag="VFX26_04850"
     CDS             complement(<1..769)
                     /locus_tag="VFX26_04850"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HEX5573837.1"
                     /translation="MTKLVYTALILVAIISISVSVIFTNQVNAQQQNGYVTTLNGKNE
                     VPSHADVTATGISGFIVNSGNSKVWYQIEAEGLNGVTQAHIHSGKVGENGPVVATLFK
                     GNKDTVNGALVQGSITADKLEGPLKGKSISDLINLFDDASAYVNVHTETFPDGEIRGQ
                     ISKGTIQVDITTKRAHISNSDGDIEFDLTNVNINEITVENQNQLESSQTTQNTLGANQ
                     TTQNTLGANQTTQNTLGANQTTQNTLGANQTTQNTLGA"
     gene            1113..1667
                     /locus_tag="VFX26_04855"
     CDS             1113..1667
                     /locus_tag="VFX26_04855"
                     /EC_number="3.1.3.16"
                     /EC_number="3.1.3.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004721 - phosphoprotein phosphatase
                     activity [Evidence IEA];
                     GO_function: GO:0004722 - protein serine/threonine
                     phosphatase activity [Evidence IEA];
                     GO_function: GO:0004725 - protein tyrosine phosphatase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dual specificity protein phosphatase 23"
                     /protein_id="HEX5573838.1"
                     /translation="MTLIGDVYRWLDSKFSSSPTNFSWVIKNQLAGSGLPLSFNQFKW
                     LLNHGIGTIVTVREISLPSHWFSAGDSENLKPHGNNVKKINYLHLRVEDYHAPTVQEI
                     DSTVKFIENQIEAKRAVLVHCAAGKGRTGTILGAYLLKKENITGKDAITRIRNIRRGS
                     IQTDSQEKSLYEYEKYLRDKPMRN"
     gene            1754..2140
                     /locus_tag="VFX26_04860"
     CDS             1754..2140
                     /locus_tag="VFX26_04860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573839.1"
                     /translation="MDFEKLEELAVEANLARNQNMRSKAKKIEEDLLNTLTENQLFFP
                     VEEEVLITKNSASYVYKKSKTYPALLEFIARILHVDIPIKIKQCKFGPGGIIIAADNK
                     EEAQKILKDCCRELQILIKAKEGHID"
     gene            complement(2137..3153)
                     /locus_tag="VFX26_04865"
     CDS             complement(2137..3153)
                     /locus_tag="VFX26_04865"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX5573840.1"
                     /translation="MSNNHNPYEISKGKHVMLLCEDKENRAEAAAYWINQGLEEGQLC
                     IYASVYAFDQTHMLGIAKLSAKLKNYQENIDNKNLQIINFKPFFESALSGNLLLFEDL
                     KTNLENMVHDLIMQGKIERITVFADAACCLCETKSFEKSEILEKWWQDVHDEWLRNNY
                     HITVICPHPHPILKNRLDSKSKISDSHDLLVDLNKYDLRNLVTSSGQEIRPRILIAES
                     DPDLMMLYVEFFAERNITAVVVPEGNECLSVVKENDFDIIILDTHLSGSIRASDLAKE
                     IYRIKPTQRIVLTTTNPLYGTTDGIKSFRVSRQDVLIKPFRLSNLINVIDNKRNSCTS
                     FEQN"
     gene            complement(3494..4492)
                     /gene="ilvC"
                     /locus_tag="VFX26_04870"
     CDS             complement(3494..4492)
                     /gene="ilvC"
                     /locus_tag="VFX26_04870"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HEX5573841.1"
                     /translation="MTAKKWFDNDVSLEQLKSKTIAVIGYGIQGRAQANNMKDSGLNV
                     LIGLYKEGKSWKIAENDGHVVKEVKEASELADIIHVLTPDMEQANVYKNEIEPGLSEG
                     KTLTFSHGAAIHWKWIIPPKNIDVVMVAPKGPGQRVRELFQEGFGTPSLIAVYQDYSK
                     NALNTVLGLAKAIGSTRPGVIETTFKEEVETDWFGEQVDLCGGAHSLVLTAFETLVEA
                     GYQPEVAYYECLHELKLIVDLIYKYGITGMYNRVSETARYGGLTRGPMVINNQAKENM
                     KKVLNDIQSGEFANEWVSVYKKDGKNSFVRFMNQLEKTQLEIVGKEMRNMMWKNEE"
     gene            complement(4724..5272)
                     /locus_tag="VFX26_04875"
     CDS             complement(4724..5272)
                     /locus_tag="VFX26_04875"
                     /EC_number="2.7.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000309 - nicotinamide-nucleotide
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide-nucleotide adenylyltransferase"
                     /protein_id="HEX5573842.1"
                     /translation="MIGRFQPFHNGHLKLAHQILKECDELIIAVGSSQFNYTFSNPFT
                     AGERIYFIHDSLVESKIDLRRVYIVPILNLENNAIWVQHLKSMLPKFDSIYSGNKFVL
                     ELLSHTSEIFSVRTPIFYNENDCNGTNIRMNIVMDKKWKNFVPSAVYKIISNLDGIQR
                     IKVLFETQRDGTGEIKQYPDIK"
     gene            complement(5290..6957)
                     /gene="metG"
                     /locus_tag="VFX26_04880"
     CDS             complement(5290..6957)
                     /gene="metG"
                     /locus_tag="VFX26_04880"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004825 - methionine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HEX5573843.1"
                     /translation="MLNSKTESVIITSALPYANGEIHLGHISSTYLPADILRRFLKLI
                     GVEVYHLCASDDFGTPVLIETEKKKVKPEDYVKYWHDKDLEDFNSAGIVFDSFSQTSS
                     ETNRKFVQYVFDVLRKKDLIYEKVVVQYYCEKDLKFLPDRYVVGKCPYCGAIGQYSDL
                     CEKCGRIPEKILDPKCAICGIPPVKKQSNHFFFKLSNFEHVLEKWLKDNKFLQPDVKK
                     YVLNWIVEGLQDWDITRDIPWGVNIPIEGNEQKDKVFYGWFDNHLCYISSLIGLLQDV
                     DKARDKWNNSKIYHFIGKDIVYHHYLFLPAIRFGINQEYKLPDFIPTRGHLMLQNNKI
                     SKSRNWYIGLREFVNLFQADYLRFYIASICSYSQDDINFDWNDFEKKINNELIANIGN
                     FVNRTLTFIKKNFGNVIPNPSEYDELDKNALAEMERIGNTVGGFILSNEIDKALKNIL
                     FFSSIFNQYFQKKEPWKNPGKSGSALYVSINAVRSLSILLAPFIPFSAEQIWKQISLE
                     GNIHEQNWDSIGTILLKAGHRLGEVEPIFKKVDKDKIKEQVNKLNNR"
BASE COUNT         2143 a         1288 c         1139 g         2437 t
ORIGIN      
        1 tagctcctag tgtattttga gttgtttgat tagctcctag tgtattttga gttgtttgat
       61 tagctcctag tgtattttga gttgtttgat tagctcctag tgtattttga gttgtttgat
      121 tagctcctag tgtattttga gttgtttgtg aggattcaag ctgattttga ttttccactg
      181 ttatttcatt tatgtttaca ttggtcaaat caaattcaat gtcaccgtca ctgttactga
      241 tgtgtgctct tttagtagtg atatctacct gaattgttcc cttactaatt tgtcctcgaa
      301 tttctccgtc aggaaaggtc tctgtgtgta cgtttacata cgctgatgcg tcatcaaaga
      361 gattaataag atcggatatt gacttgccct ttaagggacc ttctaatttg tctgctgtta
      421 tgctgccctg aactaatgcg ccattgacag tatccttgtt gcctttgaat agtgttgcta
      481 caacaggacc attttcgcca actttccctg aatgaatgtg agcttgtgtt accccgttga
      541 ggccctctgc ttcaatctga taccatacct ttgaattgcc actgtttaca ataaatccac
      601 taataccagt tgccgttaca tccgcatggg atggtacttc attctttcca tttagcgtcg
      661 taacgtaccc attttgttgt tgtgcattta cttgatttgt gaatattact gaaactgaga
      721 ttgatattat tgccactaga atcagtgctg tgtagactaa ttttgtcatt acttaaaaaa
      781 agacaaaatg atttattaat gtccatgtat attcattcta aaaaattagg gctccttaaa
      841 aatatggtaa atcataataa actatgtggt atactatgac ctgaatctgt gcggatagaa
      901 cttctacctg atttagtttt tgctgttaga ttttttcgat gttgagattg tatatacaca
      961 gatccattat ctcgtgatcc ttgagagtca aattgttaga gtagctcgca tcttttaggg
     1021 tgcaagttcc taaaccatga tctgtacagg tttttaattt ggtaatgaag atttaaatct
     1081 acaatgttat tcagtacaat ccgactcaaa aaatgacact tattggggac gtttacagat
     1141 ggcttgacag taaattcagt tctagtccca caaattttag ttgggtgata aagaatcaac
     1201 ttgctggaag tggactacct ttatcattta atcaattcaa atggttactg aatcatggaa
     1261 taggaactat tgtaacagta cgagaaatat cattaccttc acactggttt tctgccgggg
     1321 atagtgaaaa tttaaaaccc catggtaata atgtcaagaa aataaattac ttgcatctaa
     1381 gagtcgaaga ctatcatgct ccaaccgttc aagagattga ttcaacagtt aaatttatcg
     1441 agaatcaaat tgaagcaaaa agagcagtat tagttcattg tgccgctggg aaaggaagaa
     1501 cgggaacgat attgggtgct tacttgttaa aaaaagaaaa tattactggg aaggatgcta
     1561 taaccagaat tagaaacata cgtcggggat ctattcaaac tgattctcaa gaaaagtcac
     1621 tttacgagta tgagaaatat ttgagagaca aaccaatgag aaattgaaat taagttaaaa
     1681 tcatgttagt aacagaaccg tctgacgtaa tgagtataat aacattttat taataccaaa
     1741 taatataatt ggtatggatt ttgaaaagct agaagagttg gctgttgaag caaatcttgc
     1801 acgaaatcag aatatgagat cgaaagctaa aaaaatagag gaggatctat tgaatacgct
     1861 gactgaaaat cagttatttt ttcctgtaga agaagaggtt ttaattacca agaattctgc
     1921 ttcatatgtg tataaaaaaa gcaaaacgta tccagcattg ttagaattta ttgcgcgaat
     1981 attacatgtt gatattccga tcaagattaa acaatgcaaa tttggtcctg gaggaatcat
     2041 aatagcagct gacaataagg aagaagcaca gaagatctta aaggattgtt gccgtgaatt
     2101 acagattctt ataaaggcaa aggaaggaca tattgactaa ttttgttcaa atgatgtgca
     2161 agaatttcgt ttattatcaa ttacgttgat aagattagac aacctgaaag gctttatcaa
     2221 aacatcttgc ctgctcactc tgaaagattt gattccatct gtagttccat ataggggatt
     2281 agtagtggtt aaaacaattc tttgtgtcgg ctttatacga tatatctctt tcgcaagatc
     2341 gcttgctcta atactaccag acaaatgtgt atctaaaata ataatatcaa aatcgttttc
     2401 tttaacgact gataggcact cattaccctc gggcaccaca accgcagtaa tgtttctctc
     2461 tgcaaagaat tcaacataca gcatcatcaa atcaggatcg gattctgcaa taagaattcg
     2521 tggtctaatc tcttggccgg atgaggttac caagttgcga agatcatatt tatttagatc
     2581 taccaataag tcatgtgaat ctgaaatctt agattttgaa tccagtctgt tcttcaaaat
     2641 aggatgtggg tgaggacata ttactgttat atggtaattg tttctgagcc attcatcatg
     2701 aacatcttgc caccatttct ctaaaatttc tgacttttca aatgatttgg tttcacacaa
     2761 acagcatgcg gcatcggcaa atacagttat tctctctatc ttaccttgca taataagatc
     2821 gtgtaccata ttctctaggt ttgtcttgag atcctcaaat aggagtaggt tgccacttag
     2881 ggcagattca aagaatggtt taaagttgat aatctgtaaa ttcttattgt cgatgttctc
     2941 ttgataattt tttaatttag cagacaattt tgctattcct aacatatgcg tttgatcaaa
     3001 ggcatagaca gaagcataga tacaaagttg cccctcttca agtccttgat taatccaata
     3061 tgctgctgct tctgcgcggt tttctttatc ttcacacaag agcatgacat gcttaccctt
     3121 agaaatttcg tacggattat gattattact caatcaaatc ccattacttc tatattcaca
     3181 ttctgcacta tcaatcctac gtcgtatatc atagtgaacg tgatagttta ttagagttat
     3241 tgtattgtat cgtatcgaaa aatctcatta aaagtttgta ttgagccttc aagataattc
     3301 cataggcaaa taaacctcta tactcacgta cttgttctct gaatatggtc aatgaagata
     3361 gggtctatta atattcatcg aaaataatat taccaataat aatagaaaac aagaactgaa
     3421 tcataatgtg gcttggataa aattggaaat gattagagta tttttaggta tattaaattc
     3481 aataccttaa gtcctattct tcgtttttcc acatcatatt tctcatttct tttccaacaa
     3541 tttccaattg agttttttcc aattgattca tgaatctaac aaatgaattt ttaccatcct
     3601 ttttgtatac acttacccat tcatttgcaa attctccgga ttgtatgtca tttagcactt
     3661 tcttcatatt ttcttttgcc tggttgttta ttaccattgg tcctctagtg agacctccat
     3721 accttgcggt ttcgctgaca cgattataca ttcctgttat tccatatttg tatatcaaat
     3781 ctactattag ttttaattca tgcagacatt cataataagc tacctcaggt tggtaacctg
     3841 cttcaaccaa agtttcaaat gctgtgagta ccaaagaatg agcaccaccg cacaaatcaa
     3901 cttgttctcc aaaccaatct gtttcaacct cttctttgaa cgtcgtctca attactcccg
     3961 gtcttgtgct tcctatagcc tttgctaatc caagaacggt atttaaggca tttttggaat
     4021 aatcctggta gactgcgata agtgatggcg ttccaaatcc ttcctgaaat aattctcgta
     4081 ctctctgacc tggtcccttg ggagcgacca ttactacgtc aatatttttg ggcggaatta
     4141 tccatttcca gtggatagct gctccatgag aaaaagtcag ggtttttcct tcagaaagcc
     4201 caggttctat ttcattctta tacacattag cctgttccat atctggagtt agaacgtgaa
     4261 taatatcagc caactctgat gcttccttta cttctttcac tacatgtcca tcattttctg
     4321 caattttcca tgattttcct tctttgtata atccaattaa cacgttcaat ccggaatctt
     4381 tcatattgtt tgcttgtgct cttccctgta taccgtagcc tattacggca attgtcttgc
     4441 tcttgagttg ttctaaagaa acatcattgt caaaccattt ttttgcagtc ataattaact
     4501 catattctat atcggtatat atgctatcta attcattaca tcagcgtatg ataagatatt
     4561 agtctagtat ctcgattcta aaacaacact ttttgcattc cagaatcaag ataccattat
     4621 tattggatat tactttgaat ttatttgcgc cgcactgctt gcatatggga catgccctta
     4681 atggctttgt catggagcat accgatgttt tttcattaga taattattta atatctggat
     4741 attgtttaat ttcgcccgtc ccatcccttt gagtttcaaa aagaaccttt attctctgaa
     4801 ttccgtcgag attcgaaata attttataaa ctgcactcgg tacaaaattt ttccactttt
     4861 tgtccatgac aatgttcatc ctaatattag taccgttaca gtcattctca ttgtagaata
     4921 ttggagtacg cacactaaaa atctcagaag tatgcgataa aagctctagt acaaatttgt
     4981 taccagaata aatggaatca aacttgggta gcatagattt tagatgttgg acccaaattg
     5041 cattattttc caaattcaat atcggtacaa tatacactct tctaaggtca atttttgatt
     5101 ctactaaaga atcatgaata aagtaaattc gttcccccgc agtgaatgga tttgaaaatg
     5161 tgtaattaaa ctgagaactt cctacggcaa ttatcagttc atcacattct tttaatattt
     5221 gatgggcgag tttcagatgc ccattgtgaa atggctgaaa cctccctatc attaatccac
     5281 aagacattcc tatctattat ttaatttatt aacttgctct tttattttgt ctttgtcaac
     5341 tttcttaaag attggctcaa cttcccctag tctatgacct gctttcagga gtattgttcc
     5401 aatggaatcc caattctgtt catgaatgtt accttctaat gatatttgtt tccaaatttg
     5461 ttccgccgaa aatggaatga atggagcaag taatattgat aatgatcgta cggcgttaat
     5521 tgaaacataa agggcggaac ctgattttcc aggatttttc cacggctctt tcttctgaaa
     5581 gtattggttg aaaattgaag aaaaaaacag aatattcttt agcgctttat caatctcatt
     5641 acttaaaata aaaccaccaa ctgtattacc aatacgttcc atttctgcca atgcattttt
     5701 atccagctca tcatactcac ttgggtttgg tatcacatta ccaaaatttt tctttataaa
     5761 agtcaaagtt cgatttacaa aattcccaat atttgctatt aattcattgt ttatcttttt
     5821 ctcgaaatca ttccaatcaa aattgatatc atcctgagaa taactgcaaa ttgatgcaat
     5881 gtaaaatcgc agataatcag cttgaaaaag attcacaaat tccctcaatc caatatacca
     5941 atttctgctc ttcgaaattt tattgttttg tagcattaga tgtccacggg ttgggatgaa
     6001 atctggtaat ttgtattctt gatttatgcc aaatctaatt gctggcaaaa atagatagtg
     6061 atgataaaca atatcttttc caataaaatg atatattttg gaattattcc atttatctct
     6121 tgccttatca acgtcttgta gcagtccaat gagtgaagat atataacata aatgattatc
     6181 aaaccatcca tagaacactt tatctttttg ttcattacct tctataggaa tgttaacccc
     6241 ccaaggaatg tcccttgtta tatcccaatc ttgcaatcct tctacaatcc agttgagcac
     6301 atatttcttt acatccggtt gaagaaattt gttatccttt aaccattttt caagaacatg
     6361 ctcaaaatta gaaagcttga agaaaaaatg attactctgt tttttaaccg gggggattcc
     6421 acaaattgca cactttggat ccaaaatctt ttcagggatt ctaccacact tttcgcaaag
     6481 atctgaatat tgtccaatcg caccacaata aggacacttt ccaacaacat agcgatccgg
     6541 caaaaatttc aagtcctttt cacaataata ctgtacaact actttttcgt agataagatc
     6601 tttttttctt aatacatcaa agacgtactg tacaaatttc ctattagttt cagagcttgt
     6661 ttgtgaaaaa gagtcaaaaa caattccggc tgaattaaaa tcttccaagt ctttatcatg
     6721 ccagtattta acataatcct ccggttttac tttctttttt tcagtttcaa taagaactgg
     6781 ggttccgaaa tcatctgatg cacataagtg gtatacctcc actccaatta attttaggaa
     6841 cctgcgcaag atatctgcag gtagataagt agacgagata tgaccaagat gaatctctcc
     6901 gtttgcatat gggagtgcgc ttgttattat tacactctct gttttggaat tgagcacagc
     6961 agaaacagtg attactacgg ggaattaaaa ctatctgaaa caatcaa
//
LOCUS       DASUMD010000175         3505 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1161841, whole genome shotgun sequence.
ACCESSION   DASUMD010000175 DASUMD010000000
VERSION     DASUMD010000175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3505)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3505)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3505
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1161841"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(6..152)
                     /locus_tag="VFX26_04885"
     CDS             complement(6..152)
                     /locus_tag="VFX26_04885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573844.1"
                     /translation="MKIDSHVIEKLFEDSKSKLKEEYESFITKIKEDLTKTRQQTLYK
                     IKRI"
     gene            complement(149..790)
                     /locus_tag="VFX26_04890"
     CDS             complement(149..790)
                     /locus_tag="VFX26_04890"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016471 - vacuolar proton-transporting
                     V-type ATPase complex [Evidence IEA];
                     GO_function: GO:0008553 - P-type proton-exporting
                     transporter activity [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit D"
                     /protein_id="HEX5573845.1"
                     /translation="MSFGKQVIATKIELIKIRRSMQISKMVHKILDDKREVLLKKIDE
                     MIDEANKAREDIWDPLDDIYKSIFQSYLTLGNSVIQSLASSTPPSIAVDVHIKRIVDV
                     KIPSLEVSTKNKSPNLTYGFSDTNSSLDQATKLIRDILPGICKAAEYENAIFSLAKEL
                     EKTQKLINALEYVIIPQYQNALTFIKSTLEEREREEFVRLKKVKAVIERKASK"
     gene            complement(817..2223)
                     /locus_tag="VFX26_04895"
     CDS             complement(817..2223)
                     /locus_tag="VFX26_04895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit B"
                     /protein_id="HEX5573846.1"
                     /translation="MSNTSSSGVEYTKVAEIKGPIIIVDGITKASFDELVEIETSEGE
                     RRLGRVLEVGNGKAVVQVFEGTSGLAITGTKAKFLGKTMVMPVSNELLGRVFDGLGRP
                     NDGLPEPIADKFLDVNGEPMNPERREYPTSFIQTGISVIDGMLTLVRGQKLPIFSGSG
                     LPHNILAAQIARQANVVGTNEDFAVVFAAIGVQYSEAQYFKRSLEESGALRRSVLFLN
                     LADDPAIERIITPRVALTVAEYLAFDLGMHVLAILTDMTNYCEALREISAAREEVPGR
                     KGYPGYLYTDLANNYERAGRIKGRNGSVTQVPILSMPADDITHPIADLTGYITEGQIV
                     LSRELFRKGVYPPVNVLMSLSRLMKDGVGEGKTRGDHMEVGNQLYDAYSRSQEVRALA
                     DIVGRAGLTGVDLKYLDVGDKFETYYLKQSIDENRNLEETLTRAWDILGNLPKGELTK
                     IKDKNIEQYFKGGSKPSK"
     gene            complement(2216..>3505)
                     /locus_tag="VFX26_04900"
     CDS             complement(2216..>3505)
                     /locus_tag="VFX26_04900"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit A"
                     /protein_id="HEX5573847.1"
                     /translation="DFDLEQVISTIQNNGTKSPLKMYHKWPVRKPRPYTERFDPTVPL
                     ITGQRVIDTYFPIAKGGTGAIPGGFGTGKTVTLHQIAKWADSKVVVYIGCGERGNEMT
                     EVLVEFPHLIDPRSNRPLMERTVLVANTSNMPVAAREASIYTGVTMAEYYRDMGLDVV
                     LVADSTSRWAEALREMSGRLEEMPAEEGYPSYLASRLAEFYERAGRVRALGSPDRSGS
                     VTIVGAVSPSGADFTEPVTTHTIRFIKTFWALDTRLAYSRHYPSINWMQSYSGYLEDV
                     SKWWTDNISPNWYNLRAESYNILQREDTLKEIVRLLGPEALPDEEKLILEMARMIKIG
                     ILQQNSFDKIDTYCGPEKQLKLVKLMVKFYNESLKSLKENIPLSDIRSMSIIPSLLKA
                     KFEIPDDQVSKLDELELTMDRQFNEIRSKKEEVELIV"
BASE COUNT         1006 a          721 c          544 g         1234 t
ORIGIN      
        1 ataatttaaa ttctttttat cttgtataat gtctgttgac gtgttttagt aagatcttct
       61 ttaatttttg ttataaaact ttcatactct tctttaagtt ttgacttgga atcttcaaag
      121 agtttttcaa ttacgtgact atctattttc atttgcttgc cttcctctct attacggctt
      181 tcactttctt aagtcttacg aattcttctc tttctctttc ttccaaggta gatttaataa
      241 aagttaaagc attttgatac tgaggtataa ttacatattc aagagcattg ataagtttct
      301 gagtcttttc taattcttta gcaagactaa aaattgcgtt ctcatattct gctgctttac
      361 aaataccagg taaaatatcc cgaattaatt tggtagcttg atccaaagat gaattggtat
      421 ccgagaatcc gtaagtcaga tttggagatt tgttctttgt agatacttcc aaagacggaa
      481 tttttacatc tacaattctt ttaatatgaa catcaactgc gatggaaggt ggtgtggaac
      541 tagctaagga ctgaattaca gaatttccta aagtaagata tgattgaaaa attgatttat
      601 aaatatcgtc taagggatcc caaatgtctt ctctagcttt atttgcctcg tctatcattt
      661 catcgatttt ttttaataat acttctcttt tatcatcgag aattttatga accatttttg
      721 agatttgcat agagcgacga atctttatta gttcaatttt cgttgcaata acttgttttc
      781 caaatgacat attaattcac tcgattatag tcactattat tttgaaggtt tagaccctcc
      841 tttaaaatat tgttcaatat ttttatcctt aattttagta agttctccct ttggtaggtt
      901 gcccaaaatg tcccatgctc gagtcagggt ttcttcaagg tttctatttt catcgatact
      961 ttgtttcaaa taataggttt caaatttatc cccaacatca agatatttca aatctacccc
     1021 tgttaatcca gccctaccta caatatctgc taaggctcga acttcttgtg atctagaata
     1081 tgcatcatat aattgatttc ccacttccat atgatcacct cttgtttttc cttctccaac
     1141 accatccttc atcaatctag aaagagacat caaaacattc acaggtggat acaccccttt
     1201 tctaaaaagt tctctactca atacaatttg accttctgta atataaccag taaggtcagc
     1261 aattggatga gttatatcgt ctgctggcat agacaaaatg ggaacttgag tgacacttcc
     1321 atttctacct ttgattctcc cagctctttc ataattattt gcaaggtctg tatataaata
     1381 accaggatag ccttttcttc ctggtacttc ttctctagca gcactgattt ctctaagggc
     1441 ttcacagtaa ttggtcatgt cagtaaggat agctaagaca tgcataccaa gatcaaatgc
     1501 aagatattct gccacagtta atgcaactct aggtgtaatt attctttcaa ttgcaggatc
     1561 gtctgctagg ttaagaaaca acacactacg tcttaatgca cccgactctt ctaaactcct
     1621 tttgaaatac tgagcttcag aatactgaac cccaattgca gcgaaaacaa ctgcaaaatc
     1681 ttcattggta cctactacat tggcctgtct tgcaatttga gctgctaaaa tattatgagg
     1741 tagtccagac ccagaaaaaa ttggtaattt ttgtcctctt acaagagtaa gcattccgtc
     1801 aataacggat atacctgttt gaataaagga agttggatat tctcttcttt ctggattcat
     1861 cggttcacca tttacatcta gaaatttgtc agcaattggt tcaggcagac catcatttgg
     1921 tctacccagt ccatcgaaaa ctctgcctaa aagttcgtta gaaactggca ttaccatagt
     1981 ttttcctaaa aattttgcct tggtacccgt tatagcaagg ccggatgttc cttcaaaaac
     2041 ttgaactact gcttttccgt ttccaacctc taaaactctc ccaagtcttc tttctccttc
     2101 agatgtttct atttcgacca actcatcaaa tgatgctttg gtaattccat ctacaataat
     2161 tataggacct ttaatttccg caaccttggt atattcaaca ccactactac ttgtattaga
     2221 caattagttc tacctcctct ttttttgatc ttatttcatt gaactgtctg tccattgtta
     2281 attccaattc atctaacttg gaaacttggt catctggaat ttcaaacttt gctttaagta
     2341 aggatggaat aatcgacatt gaccgaatat ctgaaagagg tatattttcc ttgagtgatt
     2401 ttagtgattc attgtaaaat ttgaccatca acttgacaag ctttaattgc ttttctggac
     2461 cacaataagt atcaatttta tcaaaggaat tttgttgaag gatcccaatt tttatcattc
     2521 ttgccatttc gagtattaat ttttcttcat caggtaatgc ttcaggacct aacaatctaa
     2581 caatttcttt aagtgtatct tctctttgta gtatgttata agattcagct cgcaaattat
     2641 accagttcgg actaatattg tcagtccacc actttgagac atcttctaaa taacccgaat
     2701 aagattgcat ccaattaatt gatggatagt gtctagaata tgctaatcga gtatctagag
     2761 cccaaaaagt tttgataaac ctaatagtat gagtagttac tggttcggta aaatcagctc
     2821 cagaaggcga gactgctccc acaatagtga cagaaccact tctatcaggc gatcctaatg
     2881 cacgcaccct gccagccctc tcgtaaaatt ctgctaatcg agatgcgaga taagatggat
     2941 atccttcttc tgcaggcatt tcttctaatc gtcctgacat ttctcttaat gcttcagccc
     3001 atctacttgt agagtcagca acaagaacta catccaatcc catatctctg taatattcag
     3061 ccattgtcac accggtgtaa attgaagctt ctctggcagc aacaggcata ttactagtat
     3121 tagcaactag tactgttctt tccatcaaag gtctattgga tcggggatct atcagatgag
     3181 gaaattcgac gagaacctca gtcatttcgt taccacgttc tccgcatcca atgtacacca
     3241 cgaccttgga gtcggcccat ttggctattt gatgtaaagt aacggttttg cctgttccaa
     3301 agcctccagg tatagcacct gtccccccct ttgctatggg aaaatatgta tctataactc
     3361 tttgaccggt tatcaaaggt acagtaggat cgaaacgttc cgtatatggc cttggttttc
     3421 tgactggcca tttatgatac attttcaatg gagactttgt cccattattt tgaatagttg
     3481 aaataacttg ttccaggtca aaatc
//
LOCUS       DASUMD010000176         3376 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_721305, whole genome shotgun sequence.
ACCESSION   DASUMD010000176 DASUMD010000000
VERSION     DASUMD010000176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3376)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3376)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3376
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_721305"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1210
                     /locus_tag="VFX26_04905"
     CDS             <1..1210
                     /locus_tag="VFX26_04905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HEX5573848.1"
                     /translation="SRSKIILVSIFLTSILTITFVISFLSGISVIAQNNNAFSKEGEK
                     TTVVTGGHGTGYNTIRTTGDVLDSINADERTDLTIDPMKYLREFNYGRVSTTDNGTTL
                     RDFTIIAQDKNLEVSPGVFMDAWTFNGTIPGPTIRATEGDLVKIKFINNGSKPHTMHF
                     HGIHQSQMDGVFEIIAPGGSFTYEFTAEPFGLFLYHCHMQPLEEHISKGLYGVYIVDP
                     KTPRPPADEMVMMMNGYDNDFDGENNFYTVNGIPNYYMHHPIQIEKNKLIRVYLVNIL
                     EFDQINNFHLHANLFQFYRTGTSLTPTEYTDTVTFSQGERGILEFSYKYPGPYMFHAH
                     KTEFAEKGWTGLFLVKEDQSEPDVTAFTKGERAVYPSEISNNTFTTQTKTKDSQSTIV
                     SYGESSQGGS"
     gene            1216..2520
                     /locus_tag="VFX26_04910"
     CDS             1216..2520
                     /locus_tag="VFX26_04910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent cation transporter"
                     /protein_id="HEX5573849.1"
                     /translation="MEFDENRNNRKTSRKKMTVIALIPLIVLSGMLVFLLGPGMSILN
                     IGIPLPEITIEKIEFQNDKIVAFIRNTGPEGVDVAQADINDRMIPAGIEPSKTLSRLA
                     EAKVIVPFSWIAGVPYEVGITTSDGTRFSKSVEAAALAPTPNVEQASYFAIIGIYVGV
                     IPVLIGLLWFPFIKRLSMNKYKFFLSLTAGLLVFLGIDALVESNGIVGQNIAGAFNGQ
                     VLIAMITIITFLVLLYTSEKLVERAKMKSDDNTSKSNLVTYSSSPSSTTKIPQKQQQQ
                     QLAKPFAIAMMIAIGIGLHNFGEGLAIGAAVLLGEVALSTFLIVGFTLHNTTEGLAIV
                     APMAKSGGKVTIRKLIVMGLIAGIPTIVGAWIGGFLYSPIAAIIFLSIGAGAIFQVVY
                     SITSWMSSNTSEPRKAMLSTPMIAGFTVGMAIMYATSLLIPS"
     gene            2576..3034
                     /gene="mntR"
                     /locus_tag="VFX26_04915"
     CDS             2576..3034
                     /gene="mntR"
                     /locus_tag="VFX26_04915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator MntR"
                     /protein_id="HEX5573850.1"
                     /translation="MKGDSDGDINRLESIRDAHTGKKENEDRTDRMEDYLEVIYELVE
                     QKGYATTIDISQYLNVSSPSVTKMVKRLDETGYLKYEKYRGICLTQQGIDVAMNIHQR
                     HSLLAEFLKIIGVDEDIANKDAEGIEHHLHPQTLKKLEEFVKNVKKNHGL"
BASE COUNT         1215 a          517 c          630 g         1014 t
ORIGIN      
        1 gtcaagatcg aaaataatat tagtatcgat atttctaacc agtattctaa ctataacttt
       61 tgttatttct tttcttagtg gaatttcagt cattgctcag aataataatg ccttttcaaa
      121 ggagggcgaa aaaaccacag tagttactgg aggacatggt actggataca atacaattag
      181 aactacaggt gatgttttag attcaatcaa tgcagatgaa agaactgatc tgactataga
      241 tccaatgaaa tatctaagag agttcaacta tggtagagta tcaacaacag acaacggaac
      301 aactttacga gattttacta taatagctca agacaagaat cttgaagtat caccaggtgt
      361 atttatggat gcatggacgt ttaatggaac aattccaggt ccaacaatta gagcaaccga
      421 aggtgatcta gttaaaatca agttcataaa taatggatca aaacctcata ctatgcattt
      481 ccatggcatc catcaatctc aaatggatgg agtatttgaa attattgctc caggtggaag
      541 cttcacttat gaatttacag ctgaaccatt tggtcttttt ctttatcatt gtcatatgca
      601 gcctttagaa gaacacatat cgaagggtct ttatggtgtt tatattgttg atccaaaaac
      661 accaagacct ccggcagacg aaatggttat gatgatgaat ggatacgata atgattttga
      721 tggtgaaaat aatttttata cagtaaatgg aattccaaac tattacatgc atcatcctat
      781 tcaaattgaa aagaacaaat tgatacgagt atatttggtt aatatattag aatttgatca
      841 aataaacaat tttcatttgc atgcaaatct atttcagttc tatagaactg gaaccagctt
      901 gacccctact gagtatacag atacagtaac atttagtcag ggtgaaagag gaatactaga
      961 attctcctac aaatatcccg gtccttatat gttccatgct cacaagacag aatttgcaga
     1021 gaaaggatgg actggcttgt tcttggttaa agaagatcaa tctgagccag atgtgacagc
     1081 attcactaaa ggtgaaagag ctgtctatcc gtctgagata agtaacaata cttttactac
     1141 tcaaactaaa acaaaagatt ctcaatctac aattgttagt tatggagaat cttcacaagg
     1201 aggtagttaa tagaaatgga gtttgatgag aatagaaata acaggaagac aagtcgaaaa
     1261 aaaatgactg ttattgcatt aattccttta atagtattgt ctggaatgct tgtatttctt
     1321 cttggtcctg gtatgtcgat attaaacata ggaatacctt tgcctgaaat cacaatagaa
     1381 aagatagaat tccaaaatga taaaatcgta gcatttatcc gtaatacagg tccagaggga
     1441 gtagacgttg cacaagctga cattaatgat agaatgatcc cagctggaat agaaccaagt
     1501 aaaacattgt caagactggc agaagcaaag gttatagtac ctttttcttg gattgcaggc
     1561 gtaccctatg aagttggaat aactacttct gatggtacac ggtttagcaa gagtgttgaa
     1621 gccgctgctt tagcaccaac tccaaatgtt gaacaagcat catactttgc aattattggt
     1681 atatatgtag gagttatacc cgttcttata ggtcttctct ggtttccgtt cataaaaaga
     1741 cttagcatga acaagtacaa attcttcctt agtcttactg cgggattgct tgtcttcttg
     1801 ggaatagatg cactagtaga aagcaatgga attgtaggac aaaatatcgc aggagctttt
     1861 aatggtcaag tgttgattgc tatgattaca atcattacct tcttagtatt gctatacaca
     1921 tctgaaaaac ttgtcgaacg agcaaaaatg aaatctgatg acaatacatc taaatctaac
     1981 ttggtaacat attcttcttc tccttcttcc acaacaaaga ttcctcaaaa acaacagcaa
     2041 caacaattag caaaaccttt cgctatagca atgatgattg caataggaat tggattacat
     2101 aactttggag aaggtttggc aataggtgct gctgttctat taggagaagt agccctaagt
     2161 acttttctaa tagttggatt tacattacat aacactactg aaggattggc aatagtagca
     2221 ccaatggcca aaagcggtgg caaagtcaca atacgaaagc tgatagtaat gggtttgatc
     2281 gctggtattc caacaatagt aggagcatgg attggaggtt ttctttattc ccctattgct
     2341 gcaataatat ttttgtcgat aggtgctggt gcaatatttc aagtagtata ttccatcact
     2401 tcttggatgt catcaaatac tagtgaacca agaaaggcta tgttaagtac acctatgatt
     2461 gcaggattta cggtaggaat ggcaataatg tatgcaacat cattgctgat accatcttaa
     2521 ctaattgtta ggaactaaaa tatacataag ggtgtaaata aaattgcaaa gaaagttgaa
     2581 aggtgattct gatggagata tcaatcgtct tgaatcgatt cgtgatgctc ataccggcaa
     2641 gaaagaaaac gaagatcgaa cagatagaat ggaagactac ctggaggtca tttatgaatt
     2701 agtagagcaa aaaggttatg ctacaaccat agatatttct caatacctta acgtaagttc
     2761 tccaagtgta actaaaatgg taaagcgact ggatgaaact ggatacctca aatatgaaaa
     2821 gtatagggga atttgtctaa cccagcaggg gattgatgtg gccatgaata ttcatcagag
     2881 acatagtttg ttagctgaat ttttaaaaat aattggagta gatgaagata ttgcaaataa
     2941 agatgcagag ggtatagaac atcatctgca tccacaaact ttgaaaaagt tagaagaatt
     3001 tgtaaagaat gtaaaaaaga atcatggact ataaacattg catttttcct aatattatta
     3061 attaaaacta acttgagata gtcatttaat ttaatttcgg tatctgtttt gtccttccta
     3121 ttgtgaaaaa tgtaaatcat atggtttagt atctcaaata ataatattgt cattacataa
     3181 aaggtctaaa gtatatgatc gaaacatgaa tcaattaaaa gaattgataa tatgaaaaat
     3241 tcaataatag agagtgataa agacttataa ttgttagcaa aatataacag ttaatcattt
     3301 ctacgtaggg agaataaaca gcaacaaatg aaagaataat aaataaaaaa ttctcataag
     3361 tggttaaaag attaaa
//
LOCUS       DASUMD010000177         2238 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1605963, whole genome shotgun sequence.
ACCESSION   DASUMD010000177 DASUMD010000000
VERSION     DASUMD010000177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2238)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2238)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2238
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1605963"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..493)
                     /locus_tag="VFX26_04920"
     CDS             complement(<1..493)
                     /locus_tag="VFX26_04920"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEX5573851.1"
                     /translation="MITVNSYAQTTAVDDTLLPKLFDRVKNSVVQITVSGEDPRSSAL
                     GSGFIFDTSGHIITNDHVVRNRSFNDTNTNNTSTNNVTVTFLDDRSFKAKIVGSDPFS
                     DLAVLQIENPQNQSMIPLVLSNSSDVKIGEHVIAIGNPFGLSGSMTEGIVSGLGRVIP
                     SQNP"
     gene            1343..>2238
                     /locus_tag="VFX26_04925"
     CDS             1343..>2238
                     /locus_tag="VFX26_04925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HEX5573852.1"
                     /translation="MNEEDNGHPKSYLLQLEKMNINFGKIERNLPIATLIEIAIQRNE
                     GLLSNSGALSVKTGKFTGRSPDDKFIVDDEVTHNLIDWGKVNHPIPTEKFDQIFERMK
                     QHVSGKDFFIFDGFVGADPDSRLPIRVFTDNAWHNIFASQIFIRPTSEDLNNHKPEFT
                     LFFVNDFASLPEIDGTKSGTFIIINFSKRMVLIGYTSYAGEIKKAMFSVMNFLLPQRG
                     IFPMHCSANMGRNGETALFFGLSGTGKTTLSADPDRHLIGDDEHGWSDKGIFNFEGGC
                     YAKCINLNKEDEPQIWNAIKFGS"
BASE COUNT          757 a          350 c          418 g          713 t
ORIGIN      
        1 ctggattctg ggatggaatg actcttccta gaccgctaac tattccctct gtcatagaac
       61 ctgaaagtcc aaatgggtta cctatggcaa ttacatgttc tccaattttt acgtccgagg
      121 aattactgag gaccagagga atcattgatt gattttgcgg attttctatt tgtaagacag
      181 caagatcaga aaaggggtcg ctacctacaa tttttgcctt gaatgaccta tcatcaagaa
      241 aagtgacagt aacattgttt gtactagtat tatttgtatt agtatcatta aacgatctat
      301 tacgaactac atggtcattt gtaataatat gaccagatgt gtcaaaaata aaacctgaac
      361 ccaatgcgga agaacgagga tcttcaccgg agacagtaat ctgtacaaca gaattcttta
      421 ccctgtcaaa taatttgggc aaaagagtat cgtcgacagc tgttgtctgt gcataagaat
      481 ttacagtaat caagctaaaa ataaacaaaa atgagaccgg aattagaaca tataatcgaa
      541 aatatctgac actagttaaa tggtccaatg taaaatgctc tataaaatgg ttcacatgaa
      601 ttctactcta aaaagttaat ttatatctat tgttttaaga attctggaag ttttgatgca
      661 cattttggct acaaatcctt tatttcttaa ttaataattt aaatactttc tacaagttga
      721 gaagagtctt cttattcatc ttttctttta cttaattttc ttctaaaaaa gtacctgtaa
      781 ttttatatta agaatgttgg ttaccacata taagtaataa ttggattagc aaatgcaata
      841 ggtacagaaa atatatggaa agggaagtag agagaattgt taaatatttg gttgaagaga
      901 gagctgtact taagttgctg cgtatacttg agaggcagga caaccataat tattctaggc
      961 tcaatgagga agataacgga tcatcctatt attctagaaa atataaaacc tgggtattac
     1021 acaacaactg ttttcaatta aattaataat ttacaacata ttgaaggcta cttttttact
     1081 aatggtttaa gctataaagg acacgatctg aatttgtgaa tgtatttcaa tgacacttat
     1141 ttcataaagt ttaaacgcta tggggttcaa ttataaatat cgtctatttg aggagataga
     1201 tgtaacaacg gtattgattg gtgtagaatc atgtgattcc caccaatcaa tatttgcttt
     1261 aatttttact ttgtttattg aacaagcagt tattataaca tgaaataaat taaataccca
     1321 ttatgggcct aacatcgtat caatgaatga ggaagataat ggtcatccga agagctatct
     1381 tctgcaactt gagaagatga atattaattt tggaaaaatt gagcgaaacc tgccaattgc
     1441 gactctcatt gaaattgcaa ttcaaagaaa tgaaggacta ttatcaaact ctggtgcatt
     1501 atcggtcaag actggtaaat ttacaggtcg ctcacctgat gataaattca ttgtagatga
     1561 tgaagtaaca cataacctta tcgactgggg taaagtgaat catcccatac ctacagaaaa
     1621 gtttgatcag atctttgaaa ggatgaagca acatgtatct ggtaaggact tttttatttt
     1681 tgatggattt gtgggagcag atccggacag tcgcctgcca ataagggttt ttaccgataa
     1741 tgcctggcat aatatttttg catcccagat atttattcgg ccaacatctg aggatcttaa
     1801 taatcataaa cctgaattca ctctattctt tgttaatgat tttgcatcac ttcctgaaat
     1861 tgatgggacc aaaagtggca cattcataat cattaatttt tccaagagaa tggtcctaat
     1921 aggttacacc tcgtatgctg gggaaataaa gaaggcaatg ttctctgtga tgaattttct
     1981 gcttcctcag aggggcatat ttcccatgca ttgttctgcc aatatgggaa ggaatgggga
     2041 aaccgcctta ttttttggat tatcagggac aggaaaaaca acattatctg cagatccaga
     2101 tcggcaccta ataggggatg acgagcatgg atggtctgat aaagggattt ttaatttcga
     2161 aggtggatgt tatgcaaagt gtataaatct caacaaagaa gatgaaccgc aaatttggaa
     2221 tgcaataaaa tttggttc
//
LOCUS       DASUMD010000178         6270 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1606142, whole genome shotgun sequence.
ACCESSION   DASUMD010000178 DASUMD010000000
VERSION     DASUMD010000178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6270)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6270)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6270
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1606142"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..436
                     /locus_tag="VFX26_04930"
     CDS             <1..436
                     /locus_tag="VFX26_04930"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HEX5573853.1"
                     /translation="RANIMHEFILVLRKGDVNSGRTNRNDILPAKHEEFTKEIANSIW
                     HIAPVPPGYIEHPCPFPEEIPYRLMKLYSYVGDLVLDPFNGSGQTTKVAHNFARRYMG
                     IDLMDEYVSLAKFRLDKESIHIRPDALIAKWQKIRSHYLPNL"
     gene            798..2141
                     /locus_tag="VFX26_04935"
     CDS             798..2141
                     /locus_tag="VFX26_04935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573854.1"
                     /translation="MVLITHTNATLENNFINIISPTNNSQVPVGNLTITGTAAYSSSQ
                     PCTVYALWNDTQSIPRPVITISDEKNYSMWKFTYDSEYHEIIEGPNSLMAILSCLNLP
                     NDNLTKLYSININGIEKSNTRQNLSNFSSEISDMVPNLKLNDPLEEGDVFSSKNFELA
                     MPLTKSNETKSGSSNTDEFEKIYRTNINNTLLDNDTQIGPVPPSILEIEANQNSNEFL
                     SISNETRLIADAGNDQTVSEGTSVVLNGSNSKSNQSVILSYVWKQIPNPNITIGGANT
                     MIWSFIAPNVSTDTTLTFELVVTDDRGITSTDEVNIIVRDGNNTHRQTNLNDGILAEE
                     EQNGKSNVELQPRNLIIQTLVDKNPVSKDEEQVIKIDLIDANSDDKINNATIRGQIMD
                     PSKKVIKEFSANDDSIKLTLNIPKNANVGNFVVSVNASAPGYLSSGTDTNFKVQK"
     gene            complement(2305..2634)
                     /locus_tag="VFX26_04940"
     CDS             complement(2305..2634)
                     /locus_tag="VFX26_04940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573855.1"
                     /translation="MMLEKLRDKAFFQNTIDVWIAYCEESGIDWYNIEGYRSFISYLN
                     LKGLKMQKFPLCIKESGGLYERGKDKAKFLEELSHFSDNDSSAYTLKLSSEVIDKIRS
                     YNLSGKL"
     gene            complement(2705..2860)
                     /locus_tag="VFX26_04945"
     CDS             complement(2705..2860)
                     /locus_tag="VFX26_04945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573856.1"
                     /translation="MGTGNLSTDNRADQLRKNKGGTRLKRFELNEKIDKDTASKKGIV
                     NILYDST"
     gene            complement(3143..3562)
                     /locus_tag="VFX26_04950"
     CDS             complement(3143..3562)
                     /locus_tag="VFX26_04950"
                     /inference="COORDINATES: protein motif:HMM:NF025819.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mov34/MPN/PAD-1 family protein"
                     /protein_id="HEX5573857.1"
                     /translation="MIFKRKKDVTEARRKIVLTKEITNSIITYAKSWHPNEGILILQG
                     KKEKNVIRITGLIIPPFSTHGPYYSGFPVYQLPFDLSYIGTIHSHPSGSNHPSLEDLN
                     HFFGLVSLIICYPYDVQNIGAFDRNGNRMDLETEYIY"
     gene            3858..4076
                     /locus_tag="VFX26_04955"
     CDS             3858..4076
                     /locus_tag="VFX26_04955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573858.1"
                     /translation="MSGMITGMSDNQHNVTTDVSQNSDEIVGTYVVPARLLDKYRAQF
                     QDKKFTIDSLILLRIYGVARKGEVQSKR"
     gene            4248..5213
                     /locus_tag="VFX26_04960"
     CDS             4248..5213
                     /locus_tag="VFX26_04960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX5573859.1"
                     /translation="MIIVKNLVKRYSDFNALNGLSFEVNENEIFGLLGPNGAGKTTLI
                     HILATLLKPTQGGAIVNGFDVLRDATKVRESIGVVFQAPSSDDILTGYENLKVHSLLY
                     GIPGKIREKRISEVLELVGLEDRKNDQVKKYSGGMRRRLEIARGLLHHPKVFFLDEPT
                     LGLDPQSRETMWRYIKKIVKEEKVTIILTTHYMEEADMLCDRIGFISSGKIIALDSPS
                     KLKQELGGDIVKITFNDGIPSIRDFTHFHFVHKVEQNGNSVIIYMDEVNSNMHKLIKD
                     LEGIQTIEYKKPTLNDVFLKLSGDSLSGDSPEGGFMQRYAQYKKT"
     gene            5191..5970
                     /locus_tag="VFX26_04965"
     CDS             5191..5970
                     /locus_tag="VFX26_04965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX5573860.1"
                     /translation="MLSTKKHNSKIVLGQLYALWLREIKVFLRERSRLIASTFTPLLW
                     LFVIGSGLGSTNLQIGTDYEKFIFPGIICMSVIFTSVFFGSYIIWDRKFDFLKSVMVA
                     PASRTTVFIGKTFGGMTTSLFQVTIILAIGIALGINYDALTLLQIISIVLILSFCLTS
                     LGLTFGSYIESLEGFQLIVSFVVFPLFFLSGALFPIDNLPAWLKFITLVDPATYSVDA
                     LRNSILHLGTYSFELDVVILLMFTFIITLIGIFSFKRMKAV"
BASE COUNT         2117 a         1069 c         1077 g         2007 t
ORIGIN      
        1 tagagctaat ataatgcacg aattcatact tgttttaaga aaaggagatg taaatagtgg
       61 aagaacaaac agaaatgata ttcttcccgc aaagcatgaa gaatttacaa aagagattgc
      121 aaattcgata tggcatattg cacctgttcc tccaggatat atcgaacatc cttgtccatt
      181 tccagaagag attccgtatc gtcttatgaa actctattct tacgtaggtg atttagtgct
      241 tgatcctttc aacggtagcg gacaaactac taaggttgca cataatttcg ctagacgata
      301 catgggtata gacttaatgg atgagtacgt ctcgctggct aagttcagac tagataaaga
      361 atcaatacat ataagaccag atgcattgat agcaaagtgg caaaaaattc gatcacacta
      421 tcttccaaat ttgtaagtta aaataacaaa ttgtagccaa atatatcctg aattattcat
      481 gttaatgaag caataaaccg tctagtaaat tcaatcttga tggacaatat tatttgtgta
      541 tatcgcacct gtcggaaaat taaccattcg tccacaacat tgaatatgaa atgccaagtc
      601 gtagaaatgc aattgaattt cctgtagagg gccgtatttt ctcatacttt caaaatcgtt
      661 gttgtctact gttttttaat taatacttaa tatgaattac agccggacct tttatagatt
      721 ttttagatct agaggataac aaattgcatc aagaatatac caaacttctt gtaatattcc
      781 tattgcccat cttattgatg gtcctaatta cccatactaa tgccacatta gaaaataatt
      841 ttatcaatat catctcccca acaaataaca gtcaggttcc agttggcaat ttgaccatca
      901 caggaactgc cgcatatagc tcaagccaac catgtacagt ttatgcttta tggaatgata
      961 cgcaatctat tccgcgtccg gtaattacaa taagtgacga aaaaaattat tcaatgtgga
     1021 aatttactta tgattctgaa tatcatgaaa taatagaagg ccccaatagt ctcatggcaa
     1081 ttctatcctg tctaaattta cccaatgata acttgaccaa actttattcg ataaacatta
     1141 acggtattga aaaatcaaac acaaggcaga atttatctaa ttttagctca gaaatttcag
     1201 atatggtacc aaacttaaaa ttaaatgatc ccttagaaga gggcgatgtt ttctcaagta
     1261 aaaattttga attagccatg ccactgacta aatcaaatga aacgaaatca ggatcttcta
     1321 atactgatga attcgaaaag atttatagaa ctaatatcaa taatacatta ttagataacg
     1381 atacccaaat aggtcctgta ccaccatcaa tcctggaaat agaggcaaat caaaactcca
     1441 atgaattctt gtcaatttca aatgagacgc gattaatagc tgacgcaggc aacgatcaga
     1501 cagtctctga aggtacatca gtggtactca atggaagtaa cagtaagagt aatcagagtg
     1561 tgatcctatc ttacgtctgg aaacagatac ctaatcccaa tattacgata ggcggtgcaa
     1621 acactatgat atggtcattt atagctccca atgtttcaac tgacactaca ttaacatttg
     1681 aacttgttgt tactgatgat agggggataa cttcaacaga tgaggttaat ataattgtta
     1741 gagatggtaa taatactcac cgacaaacga acttgaacga tgggattttg gcagaggaag
     1801 agcaaaatgg taaaagtaac gttgagctcc agccaaggaa tcttattata caaactcttg
     1861 tagataagaa tcctgtttct aaagatgaag aacaagtcat aaaaatagat ctaattgatg
     1921 ccaattctga tgataagata aacaatgcta caataagagg acaaataatg gatccgtcaa
     1981 aaaaagtcat caaggaattt tcagcaaatg atgactctat caaattaaca ttaaatatac
     2041 caaagaatgc aaatgttgga aattttgtgg ttagtgtgaa tgctagtgca cccggatatc
     2101 tctcgtccgg tactgacaca aactttaaag tgcaaaaatg ataattttca ccttaattat
     2161 tacataaatc caaatttcac aaaactacgc atgaagattc aaaaaaagta ttcacatgtt
     2221 cagcatgatg attagaatat tatctggata cacacttcgg gatttttgat gaaaccagaa
     2281 gattatggct aggagactat ttgattatag ttttcctgat aaattgtaac tacggatttt
     2341 atcgattacc tcactgctca acttcaaagt ataggcagaa gaatcattgt ctgaaaaatg
     2401 ggataattcc tctagaaatt tggccttatc tttccccctt tcataaagcc cgcctgattc
     2461 cttgatacaa agaggaaatt tctgcatttt cagtcccttc aagtttaaat aacttatgaa
     2521 gctacgatat ccttcaatat tgtaccaatc aattccactt tcttcacaat acgctatcca
     2581 gacatcaata gtattttgaa agaaggcctt atccctcaat ttttccagca tcatggatat
     2641 aatatttttt aacgcaatat aaaatatctc tatatttgtt tcataagttt aatacataac
     2701 cgggttatgt agaatcatat aaaatattta caatgccttt cttacttgct gtgtctttat
     2761 ctatcttttc atttagttcg aatcttttaa gtctggttcc gcctttattc tttcttagct
     2821 gatctgctct attatctgta cttaaatttc ctgtacccaa atcaaaaggg ttgtctgtag
     2881 tttcaacaaa ttcttttatt ttactttcaa atttggccgt atatgttgga aaggtgttac
     2941 aataatcata acaggaaaga aactgatcat aatctggtgc cttctgccat cccttctgta
     3001 atattctagg acctggttta ttcttgaacc cataattttc acaatgctca cagtatctta
     3061 ctttaccttc ttcaacatca ccaacctatt tttctaattc gaaaatggat ctgctagatt
     3121 tttcaatatg atgtaaaaaa tgtcaataga tatactctgt ttcaagatcc attctatttc
     3181 cattacgatc aaaagcccca atgttttgaa catcgtatgg ataacaaatt attaatgaca
     3241 ctaaaccaaa aaaatgattc aaatcttcta gtgatggatg attggatcca ctaggatgtg
     3301 aatgaattgt tccaatatat gataaatcaa atgggagttg atataccgga aagcctgaat
     3361 agtaaggtcc atgcgtcgaa aacggtggaa taatcaatcc tgttatcctg atcacatttt
     3421 tttctttctt accctgcaag atcaatattc cctcattggg gtgccatgat tttgcatagg
     3481 ttatgatact atttgtaatc tcttttgtta aaactatttt tcttcttgct tcggttacat
     3541 cctttttcct tttaaaaatc acgatagtaa tcaccaaatt ccgggtatta agattaacta
     3601 ttaatgtttg atttgcacag tcaatagaca gttatctata caacaatcta ttgaagggtt
     3661 atgaaaatga agatctttca aaagtacatc gaaataatta ttgagaatta atattgaaaa
     3721 gtacacgtta tcaaattttt ccaactgtaa attgttaata tgatatatca acttttaaat
     3781 gaaaccttag attaaatgaa acaggtgatt accaatattg ggaatctcgt gtaagtaaag
     3841 aggcaccaga ttttattgtg agcggtatga taaccggaat gtcagataat caacacaatg
     3901 ttactactga tgtgtctcaa aatagtgatg agatagttgg aacctatgtg gtaccagcaa
     3961 ggttattaga taaatatcgt gcacaatttc aggataaaaa atttactata gacagtctta
     4021 tacttttaag gatctacggc gttgccagaa agggagaggt ccagagcaaa cgctgattgt
     4081 gtgaaagact catgatattc cattgaaaga agtaatcatc tgccttgaag agttgacagc
     4141 cccgctttca tacaagtaat gatgccacac atggctaaga tcacctgtca aagcacaaga
     4201 agcattacca aggatatttt aatggggccc caaacatttt agatcacttg ataattgtaa
     4261 aaaatcttgt caagagatac tcagatttca atgcgttaaa tggtttgagt tttgaagtga
     4321 atgagaatga aatatttgga ctattgggtc ctaacggcgc aggaaagacc actcttattc
     4381 atatactagc taccctgcta aagccaacac agggaggagc tatagtgaat ggttttgatg
     4441 ttttgcgaga tgcaactaaa gtaagggaaa gcattggtgt cgtttttcaa gcaccaagta
     4501 gtgatgatat ccttacagga tatgaaaatc ttaaagtaca ttcgttactc tatgggatac
     4561 ctggaaaaat aagagagaag agaatttcgg aggtactaga attagtcgga ttagaagata
     4621 gaaaaaatga tcaggtaaag aaatactctg gtggtatgag aagaagattg gaaatagcac
     4681 ggggcctctt acaccatcct aaggttttct tcttggacga acctacattg ggtttagacc
     4741 ctcagagtag ggagactatg tggagataca tcaagaaaat agtaaaagag gaaaaagtaa
     4801 ccatcatatt gactacacat tacatggagg aggccgatat gttatgtgat agaattggtt
     4861 ttataagcag cggaaaaata attgctctgg attcaccgtc aaaattaaaa caggaacttg
     4921 gaggagacat tgtaaaaata acctttaatg atggaattcc ttcaatcaga gattttaccc
     4981 atttccattt tgttcacaag gtggaacaaa atggaaattc cgtaattatt tatatggatg
     5041 aggtaaattc aaacatgcat aagttaataa aagatttaga aggtattcaa actatagaat
     5101 acaaaaagcc aactttgaac gacgtgttct tgaaactttc aggagattcc ttatccggag
     5161 atagtccaga aggaggattc atgcaaagat atgctcagta caaaaaaaca taattcaaaa
     5221 atagtattag gacaactcta tgcattatgg cttagggaaa ttaaggtatt tctacgtgag
     5281 agaagtagac ttatcgcttc tacttttact cccttgttat ggttatttgt catcggttct
     5341 ggccttgggt caaccaatct gcaaatagga acagattatg aaaagttcat ttttcctgga
     5401 attatttgta tgtcagtcat ttttacatca gtttttttcg gttcatatat catctgggac
     5461 agaaaatttg attttcttaa aagtgtaatg gttgcgccgg caagcagaac gacagttttt
     5521 attggtaaaa cttttggtgg tatgacaact tcactttttc aagtcaccat aattctggcg
     5581 attgggattg cgttggggat taattacgac gcactaacat tactccaaat aatatcaatt
     5641 gtattgatcc tttcattttg tctgacgtca ctgggtctga catttgggag ttacattgag
     5701 agtttggaag gatttcaatt aattgttagt tttgttgtgt ttccattgtt ttttttaagt
     5761 ggagcgcttt tcccgataga taatttacct gcctggctaa agttcattac ccttgtggat
     5821 ccagctacat attcagtaga cgcattaaga aatagtatat tacatttagg aacgtactct
     5881 ttcgaacttg atgttgtgat tctattaatg tttactttca ttattactct gattggaatc
     5941 ttctctttta agagaatgaa ggctgtttaa tacaaattaa atacagatct ctatttgctt
     6001 gctttgttat cacgaagggt gtcaaataat aatatcattc tggaggccat tcaacatcaa
     6061 gataagctct tcacagaatc atgattcaaa catggtggcc aaattgttat gatcaaatct
     6121 cttcatccag atcctcaaaa gccctagctt ttgaaatctc atgcaatttc atattggata
     6181 ttctttcaaa ttctctttta cttaagatcc ctttcgtctc taacaactct attaaggtat
     6241 ccatcttgat tccaaattcg tcttgcgatg
//
LOCUS       DASUMD010000179         4964 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1275544, whole genome shotgun sequence.
ACCESSION   DASUMD010000179 DASUMD010000000
VERSION     DASUMD010000179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4964)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4964)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4964
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1275544"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            202..528
                     /locus_tag="VFX26_04970"
     CDS             202..528
                     /locus_tag="VFX26_04970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573861.1"
                     /translation="MNKKQPMKNIFLLSSLLILMFGSLFVATSDQVYADIWDDDDTME
                     ELVKDIDNGKDNDDDMDWNEFKDSKIFKQEDIETQGCIENRQDLSNNLADYEVLRCFE
                     DSDYAY"
     gene            699..1124
                     /locus_tag="VFX26_04975"
     CDS             699..1124
                     /locus_tag="VFX26_04975"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEX5573862.1"
                     /translation="MFTNILVPVDGSDNSYRALDAALLLSEKLSSNVTVLHVMEQLPI
                     THIGSEKLLSELLEAYKKENQDILSKCSEIATQKGLTIKTLLLQGNPASVILDHSKKE
                     KFDLLIMGSRGMGKFKELILGSVSGKIVHHSPCAVLLIR"
     gene            1250..1954
                     /gene="bluB"
                     /locus_tag="VFX26_04980"
     CDS             1250..1954
                     /gene="bluB"
                     /locus_tag="VFX26_04980"
                     /EC_number="1.13.11.79"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016722 - oxidoreductase activity, acting
                     on metal ions [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0032363 - FMN catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5,6-dimethylbenzimidazole synthase"
                     /protein_id="HEX5573863.1"
                     /translation="MTEKEGLYKAVFSRRDVRSHFIDKKIPDDILVKVLNAAHHAPSV
                     GFSQPWDFILIKNKTTKLKVKDSFTQEREKSISLLDNDSDRQDKYVRLKLEGILESDI
                     NICVTYDPEKFGPFILGRTSIPETGEYSVCCAIQNLWLAARAEGIGVGWVSILSIEDL
                     RKILAIPNHVKPIAYLCLGYVNKFEVRPDLERVGWLKRTILSKVIHFEDWNNTELNNW
                     NNADMLIQKLDDTSNK"
     gene            complement(1975..3237)
                     /locus_tag="VFX26_04985"
     CDS             complement(1975..3237)
                     /locus_tag="VFX26_04985"
                     /inference="COORDINATES: protein motif:HMM:NF015882.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent malic enzyme"
                     /protein_id="HEX5573864.1"
                     /translation="MGKIKYNWAHNWIHLTLRDDAINLHRMLKGKIEIRSRVSLDNAS
                     EERGTLGLIYTPGVAYVALEISNHKKLAYDYTSKWNNVAIICDGTRVLGLGNIGPEGA
                     LPIMEGKSVLFKALGDINAIPLCINTQDKEEIIRFVKLIQPNFGAINIEDIESPKVLE
                     IVERLSKEVSIPVFHDDQHGTAIITLAALINALKLVKKELSKVRVVISGSGSAGYGIF
                     KILQTAGCKDIIVTDTKGAIFDGRVDIDYQNPYKKDIANNTNAGKLNGTLPEVISNSD
                     VFIGVSGKAGILNKQMIESMNKDAIVFALSNPDPEIIPSFALKYGAKIVATGRSDFPN
                     QINNAVVFPSVFRALLDLRANNLSEFMLVSVAHAIASIVEDIHLRNDYIIPKVDDPRI
                     LPIVTKTIKKVLGRHIKNKVDSKSRTKN"
     gene            3264..3599
                     /locus_tag="VFX26_04990"
     CDS             3264..3599
                     /locus_tag="VFX26_04990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573865.1"
                     /translation="MFIASGYWKVIHLHPPPSLSSYTYLINHNFELSQVSSHKVSMRN
                     KRMNKVKLESQYLVGIGNQHEEETTVSDTIEHEIGCPRCYNVMTLCSDFDRLYYLCEE
                     CDFSLYTLK"
     gene            complement(3705..4490)
                     /locus_tag="VFX26_04995"
     CDS             complement(3705..4490)
                     /locus_tag="VFX26_04995"
                     /inference="COORDINATES: protein motif:HMM:NF014670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="creatininase family protein"
                     /protein_id="HEX5573866.1"
                     /translation="MTNGTMEGKHKRLIEEMNAIEVRKIINEKTVAILVFGACENHGD
                     HMPFGSDFIFPAEIAKRVATNISNVIVLPAIPYGVSLHHDKFQMTMSINPETMIGIIS
                     DLLSSLNQNQISRVLIINGHDGNIGPIEIAARSIKNKHPEMTIACLESWWVLVGQLKK
                     DLFEVWNGLGHGGEAETTAVLAVRPDLVNLATAPKDVIPKLPENIRIFWKFDELTSTG
                     ATGAPQKANIRKGNEILRTLEDILISFIKEMESLDWKYGLYLK"
     gene            4755..>4964
                     /locus_tag="VFX26_05000"
     CDS             4755..>4964
                     /locus_tag="VFX26_05000"
                     /inference="COORDINATES: protein motif:HMM:NF013224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HEX5573867.1"
                     /translation="MVYAYVLICCDLAASEKVVEELEKIDGVQEVSPVSGVYDIVARI
                     SASTEEELKSIYMDIRKMKKVLTTIT"
BASE COUNT         1644 a          857 c          833 g         1630 t
ORIGIN      
        1 atttgagatt ttcgtgacaa cggatataat tttctataga aatagataac cgcctataga
       61 ggatttttca ataaagtaac aattaaatta aataaattat atcaaggcac tgtatatata
      121 tgatatttat attcaaaatg ccattatatg aaattactat agtgtattaa cttatttatg
      181 atgaatgaac ccatagaacc aatgaacaag aaacaaccaa tgaaaaacat ctttttattg
      241 tcttcattgt tgatcctaat gtttggatcc ctatttgttg caacaagtga ccaagtatat
      301 gccgatatct gggatgatga tgacactatg gaggaacttg taaaggatat tgacaatggt
      361 aaggataacg acgacgatat ggattggaac gaattcaagg attcgaaaat cttcaaacaa
      421 gaagatattg aaacacaagg gtgcatagaa aatagacagg acctttcaaa taatctagca
      481 gactatgaag tacttagatg ctttgaagac tcagattacg cctattgata gttaggatcc
      541 acaagtagcc caagttttct catttttttc tttctttata ttgtccggac ttatggttaa
      601 tttaccaacc tatggtatag gagatttaat tttaaaactg aaattagatt ggcaatagat
      661 gttaaatata ttagacgcaa ccaaaataat aatctttatt gtttacaaat atactagtac
      721 ctgttgatgg atcggataat tcctacagag ccttagatgc agcattactc ctttcagaaa
      781 aattaagttc aaatgttact gtacttcacg taatggaaca acttccaata actcatattg
      841 gatcagagaa actgttaagt gaattgctag aagcctacaa aaaggaaaat caagatatac
      901 tatcaaagtg ttcagagatt gctactcaaa aaggattaac tataaagact ctccttcttc
      961 agggaaatcc tgcctccgta attttggatc atagcaaaaa agagaaattt gaccttctaa
     1021 tcatgggaag tagaggtatg ggaaagttta aggaactaat actaggcagc gtctcaggca
     1081 agattgtaca tcactcgcca tgtgcagttt tgttaataag gtaatgatga ctgtcatgaa
     1141 catattttca tgtcacatcc aacatgggat gtctgttatt attacgaaac atacaatcat
     1201 agccaagatc tgacaacaga aaatgtgtac cgatcttgat tcttttacaa tgactgaaaa
     1261 agagggccta tacaaggccg ttttttcaag aagagatgtc agatctcatt ttattgataa
     1321 aaaaattcca gatgatatcc ttgttaaagt tttgaatgca gctcatcatg ctccatctgt
     1381 gggtttctca caaccctggg attttatatt aataaagaat aagaccacaa aattaaaagt
     1441 caaagattcc tttacacagg aacgagaaaa atctatttca ttacttgata atgattcaga
     1501 tagacaagat aaatatgtca ggctaaaatt agagggaatt ctagaatctg atattaatat
     1561 ttgtgtcaca tatgatcctg aaaagtttgg gccatttatt ttaggaagaa catcaatacc
     1621 agaaacgggt gaatatagtg tttgttgtgc catacagaac ttgtggttag cagcaagggc
     1681 tgaaggaatt ggagtggggt gggtaagtat actctcaatt gaagatttac gcaagatttt
     1741 agcgataccc aatcatgtta aaccgattgc atatctttgc ttgggatatg taaataaatt
     1801 tgaagttaga ccagatttgg aaagggttgg ttggttgaaa agaacgatac tctctaaagt
     1861 aattcatttt gaagactgga ataacactga attaaataat tggaacaatg cagatatgct
     1921 gatacagaag ctggatgata cttcaaataa gtaatattat gttattaaac gaaactaatt
     1981 ttttgtacgg gatttagaat caactttgtt cttaatatgt ctgccaagga ctttcttaat
     2041 ggtttttgta acaatgggaa gtattctggg gtcatcaact tttggaatta tgtaatcatt
     2101 tctaaggtga atatcctcga ctatactcgc gatagcatgc gccacagata caagcataaa
     2161 ctcacttaga ttattggctc gaaggtccag caacgctctg aaaactgacg gaaatactac
     2221 tgcattatta atttgattag gaaaatccga tctacctgtt gcaacaattt ttgcaccata
     2281 ctttagcgca aaactaggga ttatttcagg atccggatta cttaaggcaa atactatcgc
     2341 atctttattc atggattcta tcatttgctt atttaaaata ccagcttttc cagacacccc
     2401 gataaataca tctgagttac taattacttc cggtagagtc ccatttaatt ttccagcatt
     2461 tgtgttattg gctatgtctt ttttgtatgg gttctgataa tcaatatcca ctcttccatc
     2521 aaatattgca cctttagtat cagtaacaat aatgtcttta catcctgccg tttgtaagat
     2581 cttgaatatt ccatatccgg ctgagccaga acctgatatt acaacacgta ccttactaag
     2641 ttcttttttt actaacttga gagcatttat cagcgcggca agagtgatta ttgcagtacc
     2701 atgttgatca tcatggaaaa caggtattga tacttcctta ctcagtcttt caacaatttc
     2761 tagcactttc ggtgattcga tatcctctat atttatagcg ccaaaattag gttgtattaa
     2821 tttaacaaat ctgattattt cttccttatc ttgagtgtta atgcataatg gaattgcatt
     2881 aatgtctcct agtgctttga ataagacaga ctttccctcc attatgggca gggcaccttc
     2941 tggaccaata ttgcccaatc ctagaactct cgttccatca catattattg ctacattatt
     3001 ccattttgac gtgtaatcat atgctaattt tttgtgatta cttatctcta aggcaacata
     3061 tgctactcca ggagtataaa ttagtcctag tgtccccctt tcttcagatg cattgtctaa
     3121 tgaaacccta cttcgtattt cgatttttcc cttcaacatt ctatgaaggt taatcgcgtc
     3181 atctctaagt gtcaaatgta tccaattatg ggcccaatta tattttattt tgcccattgt
     3241 gaattggata atccagatta ctcatgttta tagcgtctgg gtactggaag gtaattcatc
     3301 ttcatcctcc cccctctcta tcaagttata catatcttat aaatcataat tttgaacttt
     3361 cacaagtgtc ttcacacaaa gtatcaatga gaaataagcg aatgaataaa gtaaaattgg
     3421 aatcacaata tcttgtagga atcggaaatc aacatgaaga ggaaacaaca gttagcgaca
     3481 ctattgaaca tgaaatagga tgtccaagat gctataatgt catgacttta tgctcggact
     3541 ttgacagact ctattatctt tgtgaagaat gtgatttctc tttgtataca ttaaagtaat
     3601 ctttgattca agaatcaaaa ataagaaaaa tgaattgatg acaatactga tgacaataat
     3661 aatttatatt caatcaggca tgaactatgg gtcgaagaaa accactattt caaatacaaa
     3721 ccatatttcc aatctagtga ttccatttct tttatgaatg aaatcaagat atcctctagg
     3781 gtacgtagta tttcgttgcc ctttctgata ttcgcctttt gaggagcacc agtcgctcca
     3841 gtagaagtta attcgtcaaa tttccaaaat attctaatat tctcaggtaa tttaggaata
     3901 acatcctttg gagcagtggc caagtttacc aagtctggac gaactgcaag aactgcagta
     3961 gtttctgctt caccaccatg accaagtcca ttccaaactt caaacagatc tttctttaac
     4021 tggcctacta aaacccacca agattccaaa catgcaattg tcatctcagg atgtttgttt
     4081 ttgatagatc tggctgcaat ttctatcgga ccaatatttc catcatggcc gtttattatg
     4141 agaacgcggc ttatctgatt ctgattaaga cttgaaagaa gatcagaaat tatgcctatc
     4201 atagtttcag gattaatact catagtcatt tgaaatttat cgtgatgcaa actgactcca
     4261 tacggaatcg caggaagaac aataacatta ctaatgttag tagcaaccct ttttgcaatt
     4321 tcggcaggga agataaaatc tgatccgaat ggcatatgat ctccatggtt ttcacaagct
     4381 ccaaacacta gaatcgcaac ggttttttca tttataattt tccgaacttc tatcgcattc
     4441 atttcttcaa ttaatctttt gtgctttcct tccatagttc catttgtcat agtttagtag
     4501 atatttacat tccaatcttt tataaaatat ctcaactaat tctagataaa gtaatcaata
     4561 attatcaatt gcacgtcata attctactat tgaggcctat agacatcatt attgtgccta
     4621 cttaaatttt gatttataaa gaaataggtt tagaagccta atctcaacca gatagaataa
     4681 tttaatccgt atcactagtg atatacctta caggtgttgt atttatttaa accctataat
     4741 attatactat atccatggtt tatgcatatg tattgatctg ttgtgatcta gctgcgtcag
     4801 aaaaagtagt tgaagagctg gaaaaaattg atggtgttca ggaagtttca ccggtatccg
     4861 gtgtatatga tattgttgcc agaatatccg catcaaccga ggaggaatta aaatctattt
     4921 acatggatat tagaaaaatg aaaaaagtgc taacgacaat aaca
//
LOCUS       DASUMD010000180         4725 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1164911, whole genome shotgun sequence.
ACCESSION   DASUMD010000180 DASUMD010000000
VERSION     DASUMD010000180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4725)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4725)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4725
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1164911"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(151..1257)
                     /locus_tag="VFX26_05005"
     CDS             complement(151..1257)
                     /locus_tag="VFX26_05005"
                     /inference="COORDINATES: protein motif:HMM:NF024824.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX5573868.1"
                     /translation="MSRFFRAKDKNNNSNKSEVTKSTDHLDFQVRDLYKKGVNHMSND
                     KLSDAIRSFELALRLDPQYVEAWIKKGYAHFHLQDYSFAISSYDMALNIDPDNYEAWN
                     LKGLAYYKMNNYTKAIECCTKALDANPSDGLVWYNYACYLTLDGKVDDGMEALKRAIE
                     IDISHAKKAVRDKDFENARVEEGFMRIIEVVVLESLRQGYDYPGKIVWATGMDKQDVE
                     DAMMRLSMKGLVTIKERKSYLGKEVSYELSRDISDKLGEVKRSGFLKSKEYSAPIQEL
                     KDIIEILDKSIESVKNGDLNQTTDSFEQLTNPTKHGNAMIEQFFDQHRDLRLYQARLK
                     DKGQEYLDSHKSELTSLLESIIEKVRSGPLSRTI"
     gene            2083..3567
                     /locus_tag="VFX26_05010"
     CDS             2083..3567
                     /locus_tag="VFX26_05010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008519 - ammonium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0072488 - ammonium transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HEX5573869.1"
                     /translation="MFRKNLTIFMLVGILTTLTVTSTYLMSASAYKPDDPAAKYHCFA
                     TDANGNYNLTAEGDLIPCEIDSGDNAWMLTASALVLIMTPGGLAIFYAGLSRQKNSVN
                     TLHMVFLTTGIIAVQWVLWGYSLAFGPDAGGYGFIGTLDWAGLENVLHDVPSIAYGGI
                     TGTTIPHQTYMIFQMMFAIITPALIVASVAERMKYSAFIIFIILWSTFVYDFAAHWTW
                     SISGPDNYGANPGYSGFGWTGAFGSLDFAGGTVIHITSGWSGLVIALMLGRRIGYGKV
                     PMEPHNISLVVLGAALLWFGWFGFNAGSAGAAATNATSAFVATQVATGMAVVTWALLS
                     WAHTGRASTIGAASGAVAGLVAITPASGFVSPMSALVIGIIASIACYAAVMFKNSRKW
                     DDALDTWGVHGIGGLVGALCTGLFAEKRFTPWGDDGLVFGNPAQLLENAVGAFAAMAW
                     AMGLTAVIIKVMDKVWPGGIRVTPKEEEIGLDLTQHGERAYVSE"
     gene            3667..4353
                     /locus_tag="VFX26_05015"
     CDS             3667..4353
                     /locus_tag="VFX26_05015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly factor SBDS"
                     /protein_id="HEX5573870.1"
                     /translation="MVDKFTIVRLSAGNEKFEILVKPDPALEYKLGKKMDISNIMISD
                     EIYSDANKGTRSSTEKLMKQFKTTDQLEIAKQIMARGDLNMNTDQRRKMIEEKKRQIV
                     EYINKNFVDPKTHMPHPVSRINAVLDEARLAVDPFKRLDDQIKNIIEPLRKVLPLKSE
                     ILELNVTVPAQFSGQSFSVFKSIGEIKSEQWLSDGSLQVVLNLNAGMKSSFLDRIGTA
                     TKGSAQVTEK"
     gene            4461..>4725
                     /locus_tag="VFX26_05020"
     CDS             4461..>4725
                     /locus_tag="VFX26_05020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HEX5573871.1"
                     /translation="MQEVKRKYVIPGDIVAEGNLRPLVNVFKIGNSIVATRIGITESS
                     KDGAKVIPLSGIYFPRANDIVIGKILDHSSLSWSVDINSCFAAH"
BASE COUNT         1423 a          851 c          924 g         1527 t
ORIGIN      
        1 ataatgtatt ttgtttcaaa ttatctcgaa tctaatatgg atacttttag agaaattcta
       61 aagaaaatag acaagtcaaa aacaaattag aatttgaata cactttcata catcaatttc
      121 gaaatgtaaa catgtaaaat ccttatgatc ctatattgtt ctagataagg gaccacttct
      181 tactttttca ataatacttt ctagcaaact agtcaattct gacttgtgtg aatcgagata
      241 ctcttggccc ttatctttca gtctagcctg atataatctc aaatcacgat gctgatcaaa
      301 aaattgttca atcattgcat ttccatgttt ggttgggttt gtcaattgct caaatgaatc
      361 agttgtctga tttaagtccc cattcttgac agattctatt gatttatcta atatttctat
      421 aatgtccttt aattcctgaa ttggtgctga atattctttg gactttagaa atccagatct
      481 ttttacttct ccaagcttgt ctgagatgtc tcttgaaagt tcgtaagaca cttctttgcc
      541 aagatatgat ttcctttctt ttatggtcac caatcccttc atacttaatc tcatcatagc
      601 atcttcaaca tcttgtttat ccatacccgt tgcccaaaca atttttcccg ggtaatcata
      661 tccctgtcgc aatgattcga gcacgactac ttcaattatc ctcatgaatc cttcttctac
      721 tcgggcattt tcaaaatctt tatcccgcac agcttttttt gcatgtgaaa tgtctatctc
      781 tattgccctt ttcaaagctt ccattccatc gtccaccttg ccatctaggg tgagataaca
      841 tgcatagttg taccaaacca gaccatcact cggatttgca tccaatgctt tggtgcaaca
      901 ttctatagct ttggtatagt tattcatttt ataatacgca agtcccttta agttccaagc
      961 ttcataatta tcgggatcta tgttcaatgc catgtcgtaa gatgaaatag caaaggaata
     1021 atcttgtaaa tgaaagtggg cgtatccctt cttaatccag gcttcaacat actgtgggtc
     1081 taatcttaga gctaattcaa aactacgaat cgcatcactc aatttgtcgt tcgacatatg
     1141 gtttacaccc ttcttatata gatcacgcac ttgaaagtcg agatgatctg tgcttttagt
     1201 tacttctgat ttattagaat tattattctt atctttagct ctaaagaatc tgctcatcac
     1261 taatgattac tcgtgtcaag ataaatagat ttggacaatt aatattttgt ggatataaaa
     1321 caaatccata atagtagaat aactacaaaa accatattca gcaattccag aggattagac
     1381 cttgcctaag actttattat tattattaat tcaaatataa gatataacct attctgtact
     1441 ggaattaaaa aaatcgtaaa gttgaaggat tttgcagatt tgagcgcctc cataatctat
     1501 ttttatctgc tatgaatgat taatcgaaga agagttggat gaattattgt tactgcgttt
     1561 atgaatacca tcgatgccta tttaatagcc tagttttgta atttctgagg actggtaaga
     1621 tactaaaata gtgagatacg gtgatactct tgttagtaaa gagagtttta cctactattt
     1681 ctgttacata gtaacaacca tattcatcgc ttttagggtg tttaaatcaa atattcttcg
     1741 ttaatatttt cgcaagattt caaatttaga tgcgacaaaa tctacaagag agattacagg
     1801 gaactaatac gcgatatctc tgtaatagtg aataggattc tttcgccaat aataatgatg
     1861 tagacctgat aattgtgtag tagtacggtt ggtttggtct ttgcaggctt tagttttctc
     1921 gctcaatatg agatgaaaaa catattaatt cacatattat aatattatca taatttttag
     1981 atcttatgat taatgaattt gagcatgata ttaaaataaa atcattagaa tttcatatta
     2041 tattgctata ttttttatac ttctctaaaa tattggtgaa taatgtttag gaagaacctc
     2101 actatcttta tgttagttgg aattttgaca acactcactg ttacatcaac atacctgatg
     2161 agtgcttctg cttacaaacc tgatgaccct gctgcaaaat atcattgctt tgcaaccgat
     2221 gccaatggaa attacaattt aactgctgag ggggatttga tcccttgtga gatagattca
     2281 ggtgacaacg catggatgct aacagcttcg gcgcttgtgc ttattatgac tcctggtggt
     2341 ttggctatat tttatgccgg gctgtcaaga caaaaaaatt ctgtaaacac attgcatatg
     2401 gtgtttctca ctaccggaat aattgctgta caatgggtgt tatggggata tagcttagcc
     2461 tttggtccag acgcaggcgg ctatggattt ataggaacgc tggattgggc tgggctagaa
     2521 aacgtacttc atgatgttcc ttcaattgca tacgggggaa taactggaac tactattcca
     2581 catcaaactt acatgatatt ccagatgatg ttcgccatta tcactcctgc acttatcgta
     2641 gcgtccgttg ctgaaagaat gaaatatagt gcattcatta ttttcatcat actttggtca
     2701 acattcgttt atgattttgc tgcacactgg acatggtcaa tttcaggacc agacaactat
     2761 ggagcgaatc caggatattc aggttttgga tggacagggg cttttgggtc tcttgacttt
     2821 gcaggtggaa cagtcattca tatcacctcc ggatggtccg gactggtcat agcattaatg
     2881 ctaggaagga ggataggata tggcaaagtt cccatggaac cacacaacat ttcactggtg
     2941 gttttaggag cagcgttact gtggtttgga tggtttggat tcaatgctgg ttcagccggt
     3001 gcagctgcta ctaatgcaac cagtgcattt gttgcaacac aggtcgctac gggtatggcg
     3061 gttgttactt gggcattgct ttcttgggcg catacgggcc gggcatctac aatcggggct
     3121 gcttctggtg ctgtagcagg gcttgtagcc attacgccgg cttcaggatt tgtctcgcca
     3181 atgtccgcac ttgtaatcgg cataattgcc tcaatcgcat gctatgcagc agttatgttc
     3241 aagaacagta gaaagtggga cgatgcgcta gacacttggg gtgtacacgg aataggcggg
     3301 cttgtaggag ctttatgcac tggattgttt gcagaaaaga gatttacccc ttggggagac
     3361 gacggattgg tttttggcaa tccagctcag ttattggaaa atgccgtagg tgcatttgcg
     3421 gctatggcat gggcaatggg tctgaccgcg gtaatcatca aagtaatgga caaagtttgg
     3481 cctggaggca taagagttac tccaaaagaa gaagaaatag gactcgactt gacccaacac
     3541 ggagaacgag cttacgtaag cgaataagaa cctctacttt cttttttcct tttttatttc
     3601 ttcaaagtag ttaagacgtt agtctcttga ttgtaggctt atatattttc aaatattaag
     3661 agtaacatgg ttgataaatt tacaatagtc agattaagcg caggaaatga aaaatttgaa
     3721 attttggtga aaccggatcc agctcttgaa tataagcttg gtaaaaaaat ggatatttca
     3781 aatattatga tctcagatga aatatattca gatgctaata aaggcactcg aagctcaact
     3841 gagaagctaa tgaagcaatt taagacgacg gatcaattag aaatagcaaa acaaattatg
     3901 gccagaggcg atttgaacat gaatacagat cagcgcagaa agatgattga agaaaagaaa
     3961 agacagattg ttgagtatat aaacaagaat tttgttgatc caaagactca catgccacat
     4021 ccggtctcaa ggattaacgc cgtccttgat gaagcccgat tggcggttga tccgtttaag
     4081 cggctagatg accaaatcaa gaatatcatc gaaccgttga gaaaagtatt acccctaaag
     4141 tcggaaatat tggaattgaa tgtaactgtg ccggctcaat tttccggcca atcattcagt
     4201 gtattcaaga gtattggtga aattaaatca gaacaatggc tttcggatgg atcactacaa
     4261 gtcgtgctta acctcaacgc aggaatgaag agctcgtttc tagatcggat tggtactgct
     4321 actaagggct cagctcaggt cacagaaaaa taagaatgac ctatgttggc cacacttaaa
     4381 atataagtct gttctaactt cccaaaaagg aagagttatg aataaaagat ttttgaattc
     4441 taatttagga ggattactct atgcaggaag ttaaaagaaa atacgttatt cctggcgata
     4501 ttgtggctga aggtaatttg agaccgttgg ttaatgtatt taagattgga aattcaattg
     4561 tggcaactcg cattggaatt acagaatcat ccaaggacgg tgccaaagta attccactat
     4621 ctgggattta tttcccccga gcaaatgata ttgtcatagg taaaatactg gaccattcat
     4681 ctctttcttg gtcggtggat atcaattcat gctttgctgc ccatt
//
LOCUS       DASUMD010000181         2745 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_501695, whole genome shotgun sequence.
ACCESSION   DASUMD010000181 DASUMD010000000
VERSION     DASUMD010000181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2745)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2745)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2745
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_501695"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..904
                     /locus_tag="VFX26_05025"
     CDS             <1..904
                     /locus_tag="VFX26_05025"
                     /inference="COORDINATES: protein motif:HMM:NF036799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573872.1"
                     /translation="DIGFKLETVVRQQGSTRNSFNANLNTTLPNVKTDYINKVLGLSL
                     SNEDVINCLRKSRLDATVVDSGTINCVIPNYRIDIFGPIDIVEEVAIGYGLYNMEPSL
                     PEYRLYGNKSRQNYFFDKIRQAMVGMGLIENINFILSNKDIHFKKMNLDKPNFFTVNN
                     SKSDEHDILRQSLLPSLLFSLSKNIHEEYPQRLFEIGPIFKPEKENFEKWSLCCVNAF
                     NGVTFSEIKAVLQTLMEICFNAKFETKQSENLRFVRGRNADIIHKGNIIGQIGEISPL
                     LIDSFKIKMPVAAFELDLTKLLGI"
     gene            1390..2712
                     /locus_tag="VFX26_05030"
     CDS             1390..2712
                     /locus_tag="VFX26_05030"
                     /inference="COORDINATES: protein motif:HMM:TIGR00702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcaO-like family protein"
                     /protein_id="HEX5573873.1"
                     /translation="MELEPILLKSQKKLKGKVSTRTKSVQETLDTILPVSSNIGVTRL
                     ADITDMDILRIPNFSAVLPGTEDYIWVYSGKGPTKLDAKASALMESIERYCSLPSANQ
                     NRMIQTSYKEVSKVSKALHPSNVVEPMLFEYDEDMIMDFLTGYDLINNIQMMVPAPLA
                     LFRYSPKPPAVNPFAYHHTNGLASGNVLEEAICHSLCEVIERDATSLAELNASALPYN
                     TLRTMTKYLSDNGVITDPIPSTEFVDDDTKYPDVDISNIDFKPVSNMVGKFNDSNIPL
                     IIKDITSPIGIPTFNASSIEWITENYGYLAEGHGTHPDARIALLRAITEVSQTRAANI
                     QGARDDLRKISYGNSNSDEKKTWQFMKSKNSVKFSEIKSYVNDDILDDINLILSRLNA
                     NGLNQVIVVDLTNPQIMIPVVRTIVPGLETFKITKAVIGKRGRESFKT"
BASE COUNT          966 a          460 c          500 g          819 t
ORIGIN      
        1 tgacattgga ttcaagttag agaccgtggt taggcaacaa ggtagtactc gcaattcctt
       61 caacgcaaac ttgaatacca ccttaccgaa cgtcaaaaca gattacatca acaaggttct
      121 tggtctatca ttatcaaatg aggatgtcat aaattgcctc cgcaaaagca gattggatgc
      181 aacagttgta gactcaggta ccattaattg tgtgattcca aattatagaa tcgatatttt
      241 cggtcccatt gatattgttg aagaagtggc aatcggatat ggactgtata atatggaacc
      301 ttctttgcca gaatatagac tttatggtaa caagagcagg caaaattatt tttttgacaa
      361 gattcgacag gcaatggttg gcatgggatt aattgaaaac ataaacttca ttttaagtaa
      421 taaagatatt catttcaaaa aaatgaatct agataagcct aattttttta cagtaaataa
      481 ctcaaagagt gatgaacatg atatattgag gcaatcactc ttaccatctt tactattttc
      541 gttatcgaaa aatatccatg aagaatatcc acaaagactg tttgaaatag gaccaatttt
      601 caagccagaa aaagaaaatt ttgaaaagtg gagtttgtgt tgcgtaaatg cttttaatgg
      661 agtaacattc agcgaaatta aagcagttct acagacactt atggaaattt gctttaatgc
      721 caaatttgaa acaaaacagt cagaaaattt acggttcgtt agggggagga atgccgatat
      781 aatccacaag gggaacatca ttggacaaat aggagaaatt tcccctttac taatagatag
      841 ttttaaaata aaaatgcccg ttgccgcatt cgagttagat ctcacgaaat tattaggtat
      901 ttgaccagaa tatttataat gacacgaagt aatgatatta ttacttggtc aattgctaaa
      961 ttgaccaagt agccccggta gagagtgcac tacgagatgt acatttgaat gtatggctat
     1021 caatgactag gtgtgggtca gaaacggggt acatctacct actctataaa ttgtaatcca
     1081 ttttttgcct ccagagttag gtatgcatga acgatgaagg gaaattgatt tgctgattaa
     1141 ttcttaattt cattaaaaaa attcagaatc aatgattttg ctttatcagt gatattaaat
     1201 tgatttaaaa ttatattcgg atttttgaag agctttattc taaactcagg gtcagtatga
     1261 gccatacgaa ctatatcatt tattgctttc aagtcgctgt cgctatattg caatctatcg
     1321 agttttatct tttacaccta tatcaaattt tagaaaaatt gatattgata ccaaattatt
     1381 caatcttcta tggaacttga gccaatattg ctcaaaagcc agaagaaatt gaagggaaaa
     1441 gtatcaacaa gaacgaaaag cgtacaggaa acccttgata ctatacttcc tgtttcaagc
     1501 aatattggag taacaagact tgcagacatt acagatatgg acattcttcg catacccaat
     1561 ttttctgccg ttctgccagg aaccgaagat tacatttggg tttatagtgg aaaaggacct
     1621 acaaaattag atgcaaaggc aagtgcgtta atggaaagca ttgaaagata ttgttcattg
     1681 ccctctgcca atcaaaacag gatgattcaa acatcctata aagaagtttc aaaggtttca
     1741 aaggcactac atccttctaa tgtagttgaa ccaatgttgt ttgaatatga tgaagatatg
     1801 attatggatt ttctaactgg atatgatttg ataaataata tacagatgat ggtgcccgcc
     1861 ccactggctc tttttagata ttctcccaaa ccgcctgccg taaatccatt tgcatatcat
     1921 catactaacg gtcttgcctc tggcaacgtt ttagaagaag caatatgcca ttcgctctgt
     1981 gaggttattg aaagagatgc aacaagcctc gcggaattaa atgcaagtgc tctgccatac
     2041 aatacactca gaacaatgac taaatattta tctgacaatg gagtaattac cgatcctatt
     2101 cctagtaccg aatttgtgga tgatgatacc aaatatcctg atgtcgatat ttcaaatatt
     2161 gatttcaaac ctgtttcaaa tatggtagga aaatttaatg actctaacat cccgctcata
     2221 atcaaggata ttacctctcc tataggaata ccaactttta atgcaagtag tattgaatgg
     2281 atcacagaaa attatggata tcttgctgag ggacatggaa ctcatccaga tgcaagaatt
     2341 gcattattga gagcaattac agaagtttca caaacacgag ctgcaaatat tcagggcgcc
     2401 agggacgatc tccgaaaaat ctcatacgga aatagcaata gtgacgaaaa aaagacttgg
     2461 caatttatga aatcaaaaaa ctctgtcaag ttttctgaaa taaaatctta tgtaaatgat
     2521 gatattttgg atgatatcaa ccttatactt tcaaggctaa atgcaaatgg attgaaccag
     2581 gtaattgtgg ttgatctcac aaatccacaa ataatgatac ctgtagtaag aacaatagta
     2641 cctgggttag aaacattcaa aatcacaaag gctgtgatcg gaaaaagagg aagggagtct
     2701 tttaaaacat gagcaaacca atagtatatc ttggacctac actaa
//
LOCUS       DASUMD010000182         3730 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1275869, whole genome shotgun sequence.
ACCESSION   DASUMD010000182 DASUMD010000000
VERSION     DASUMD010000182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3730)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3730)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3730
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1275869"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..936)
                     /locus_tag="VFX26_05035"
     CDS             complement(<1..936)
                     /locus_tag="VFX26_05035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX5573874.1"
                     /translation="MNIKDIFALSFDALKERKTKSILTIIMVMVGSSLMVAVGGISAG
                     FGGFFNQQLSNLAANIIFINPAQVQQGGGGPVVGPPPTPKITLNAAVENRLKSLPFVD
                     DVIPSYQSQVILESQGDSKEYQVFSMDPQKLTVLSPTLEFVEGSTIRQNDPSAIIISN
                     DLANPPGESAPFLKLFQTVKATYTFVDPTTGKREQESKSFVVRGIIKQTGNPNIDNSA
                     VIDTEVGNALFHKSGKFDSLIVVARSGIYVDSIEQEIRKLYGNDIGITTVKAIIKTVQ
                     EFTGGISAFLLSIAIVSLVVGAVGIITTLYTSVIER"
     gene            complement(955..3453)
                     /locus_tag="VFX26_05040"
     CDS             complement(955..3453)
                     /locus_tag="VFX26_05040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573875.1"
                     /translation="MFAKSNDGEDNKKKEVTSQSNKKEKSTGDEKSRKVGKDSSDNSD
                     EQDRPKKDELPKEQEKPSEQEPPEQESQPPVIITNTVTAPAVSSPSSDEVDEDDEDDN
                     EGPTKFAFIDSFFTDQTAQGSVVAETSSDTSAAQDIPPVTKQEVGAGEGDSILAIVLI
                     NRGFSDVTSIRASLDFPSGFTANVSPKNIDNDTALASYNGLVDAGQTFTLYFPVTISK
                     DTQVGKEYTGSLNIDYFNVAEKDEENMRDRSIKVPFKLSGKVILDAISFSSAMSSMSD
                     NQTFQDKQSTSSSVVSLLPGEPNIVETLVKNEGSAAATGVIVEVSARNQQDQIDNNNV
                     IPTTSNNGNDSITTVQQSTVIPLVSAGTTTFNVGTIPAGESVQINPVIFASNSVGSIL
                     ENIDLKISYNNAYGYKKTLDKSMGVHILPSSPQSGLTLSSTVTSETINNIRSLSEHSN
                     QNNDENDLLTNGNYGANNKNLTYAITQVSGYNSNDNTFIPSPENNNTDRIGIPPNNNT
                     VSLVAGRVDELQFNITNTNTNPIIDAVVSLVPESSSIKILGDSKWNLNEIDPYTTKQF
                     LTRVFASKSLINSPVSFKVTIQYIYDNQAKSESFNLGANVKGDITVNITDLAVNYIGG
                     NPNLVGNILNKGNTLALFTTIEISNSSSSLSSSLAEQSEGQLPPSSTQGSKNKEILVP
                     ASSFPQYLGDLEENSPLPFSIPLAMNNNTSSGVYPVSLKVTYSDDLRNSYTVINNGTV
                     EFVSPATTSNKGQGFLGNYDTLLIIVILAIIGIIAFIVVRRFRSKNKTGIQNIEPEHE
                     DENGGHDNDKGNDEDIESLLGGEDSTYKENFQKK"
BASE COUNT         1058 a          686 c          667 g         1319 t
ORIGIN      
        1 tctttctata actgatgtat atagtgttgt aataattccc actgcaccta caactaaaga
       61 cactattgct atgcttaaaa gaaatgcact aatgcctccc gtaaactctt gcactgtttt
      121 gatgatagcc ttaacagttg taattccaat atcgttacca taaagctttc taatttcttg
      181 ctcgattgaa tctacataaa ttcctgatct agcaactaca attaacgaat caaattttcc
      241 agatttatga aataatgcgt tgccaacttc ggtatcgatt acagctgaat tatcaatatt
      301 tggatttcct gtttgtttta ttattcctct tacaacgaaa ctttttgatt cttgttctct
      361 cttgcctgtt gtagggtcta caaaagtgta tgtagcctta acggtctgaa acaactttaa
      421 aaacggagca gactcaccag gtggattggc caaatcattt gaaataatta tagcggaagg
      481 atcattttgc cgtattgtag agccttcgac aaattccagt gtaggagaaa gtaccgttag
      541 tttctgagga tccatagaga aaacttgata ctcttttgag tctccctgag attccaggat
      601 tacttgagat tgatatgatg gaattacatc atctacaaat ggtaaagatt ttagcctatt
      661 ttcaactgcc gcatttaatg taatttttgg agttggtggt ggtccaacaa ctggtcctcc
      721 tccaccttgc tgcacctggg ctggatttat gaaaatgata ttggctgcta gattacttag
      781 ctgttggtta aaaaaaccac caaatcctgc gctaatacct ccaacagcca ccattaaact
      841 acttccgacc attaccataa ttatggtcaa tatggattta gtttttcttt ctttcaatgc
      901 atcaaatgac aatgcaaaaa tatctttaat attcatgatt ctgttatctc ttcattattt
      961 tttctgaaaa ttctccttgt aagtggaatc ctcaccaccc agaagtgatt cgatgtcttc
     1021 atcatttcct ttgtcattat cgtgtccacc attttcgtcc tcgtgttcag gctctatatt
     1081 ttggatccca gtcttattct tagatctgaa tcttctaaca actatgaagg caattattcc
     1141 tattatggct aatattacta tgattagtaa tgtatcataa ttaccaagaa agccttgccc
     1201 cttattactt gttgtggcag gagaaacaaa ttcaacagtt ccattattaa taacagtgta
     1261 actatttctc aggtcatcac tatatgttac ttttaatgaa acaggataaa ctccagaaga
     1321 agtgttgtta ttcattgcca aaggaatact aaatgggagt ggcgaatttt cttctaaatc
     1381 tccaagatat tgtggaaaag aagatgcagg aacaagaatt tccttatttt tagatccttg
     1441 tgtagatgat ggtggtaatt gtccttcact ttgctcggct aagcttgatg ataatgatga
     1501 tgatgaattt gatatctcaa ttgttgtgaa taaagccaac gtattgcctt tattcaaaat
     1561 atttccaaca agatttggat ttccacctat atagttaaca gcaagatcag taatatttac
     1621 tgtgatatca ccttttacat ttgcgcctag attaaaagac tcagacttgg cttgattatc
     1681 atatatatat tgtatcgtta ccttaaagga tactggacta ttaatcaatg attttgaagc
     1741 aaaaactctt gtcaggaatt gttttgtggt atatggatct atttcattca gattccattt
     1801 tgaatcacca aggatcttta ttgagctgga ctctggaaca agtgaaacta cagcatctat
     1861 gattggattg gtattggtat tagtaatatt aaactgcagt tcatccactc tacctgctac
     1921 gagggacaca gtattattat ttggaggtat accgatccta tctgtgttat tattttcagg
     1981 actggggata aatgtattat cattagaatt ataaccacta acttgagtta ttgcataagt
     2041 gaggttctta ttattagctc cgtagttacc attagtaagc aagtcattct cgtcattatt
     2101 ttggttagag tgctcagaca gagaacgtat gttatttatc gtttcagagg taacggtaga
     2161 tgaaagagtt aaaccagatt gtggagagga cggtaagata tgaaccccca ttgatttgtc
     2221 taatgtcttt ttgtaaccat atgcattatt atatgatatc ttaagatcta tattttcgag
     2281 tatactgcct acggaattgc tagcgaatat cacaggattt atttgtacgc tttcacccgc
     2341 tgggattgtt cccacattaa atgttgtagt tcctgcactt actaatggaa ttactgtaga
     2401 ttgttgtaca gtggttatgg agtcattacc gttattacta gtcgtaggaa tcacattatt
     2461 attatcaatt tgatcctgtt ggttcctggc cgatacttcg acaataactc cggtagctgc
     2521 agccgatcct tcatttttaa ctagtgtttc tactatattg ggctcccctg gaagtaaact
     2581 aaccacactt gaagaggtcg attgcttatc ttggaatgtc tgattgtcag acatagagga
     2641 cattgcggat gaaaatgata ttgcgtctaa aataacctta ccgctgagtt taaagggaac
     2701 ttttatcgat ctatctctca tattttcttc atccttttcg gcaacattaa agtaatctat
     2761 attgagggaa ccggtgtatt cttttcctac ttgagtatcc tttgatatgg ttactggaaa
     2821 gtatagtgta aatgtttgac ctgcatcaac aagaccatta tagctagcta gcgcagtatc
     2881 attatcgata ttctttggag atacgttcgc agtaaaccca gacgggaaat caagtgatgc
     2941 ccttatgctc gtcacatcgg aaaatcctct gttgattagg acaatagcca gtatggaatc
     3001 accttctcct gctcctactt cttgctttgt tactgggggt atgtcttgtg ctgctgaagt
     3061 atccgaagag gtttcggcaa ccaccgatcc ctgagcagtt tgatcagtga aaaaagagtc
     3121 aataaaggcg aattttgtgg gaccttcatt atcatcttca tcatcttcat caacttcatc
     3181 gctgctaggg gaactgacag caggagcagt aacggtattt gtaataatga cagggggctg
     3241 tgactcttgt tctggtggtt cttgttctga tggcttttct tgttcctttg gtagttcatc
     3301 tttctttggt ctgtcttgtt catctgagtt gtctgaagaa tccttgccaa ccttccgtga
     3361 cttctcatca ccagttgatt tttctttttt attactctgg gaggtaactt ctttcttttt
     3421 gttatcctct ccgtcatttg acttcgcaaa cacagaaaat attgtagtat attggcctag
     3481 aatactaccg gttagcaata aacatataca ggatagcgag agaaaaatat ttagcccatc
     3541 atcataattg taattataat ccttattaaa gaacatattc aaatcccaga attttttact
     3601 tctttttgga ttcttccatc tttgatatgt atagatctat cggtgtttgc tgctagatca
     3661 tgattgtgag tcaccataat tattgttctt ttaaacttgt ttgatagtag ctttaataag
     3721 ccaaaaacat
//
LOCUS       DASUMD010000183         2127 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1498025, whole genome shotgun sequence.
ACCESSION   DASUMD010000183 DASUMD010000000
VERSION     DASUMD010000183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2127)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2127)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2127
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1498025"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            261..1229
                     /locus_tag="VFX26_05045"
     CDS             261..1229
                     /locus_tag="VFX26_05045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEX5573876.1"
                     /translation="MVDLIYGRGITDLVREFPFYLTFFRNIIDIRVFHKKRTLYGSAD
                     IINVCNLHCSHCYWWLNREDENNELSVDNWRSIIRNTFKKQRLIGVTLVGGEPTMRPE
                     VIDVFCQEMPGRVSVVTNGTFPLKRFDDLYFYWISLDGTEKVHDTIRGQGSYAKTRNT
                     ILEYISGPPRKGKPAWKDIWISMTINSLNYHTVTDLVEEWRNKINKIGFQFHTPFMKD
                     DPLWLPFGETRNEVVDKIISIRKKYPKYVVNTEKQISLMKGNWGGNGTTPIQCPSWAI
                     LSLDHKGRTKQPCCIGSSDSKGLKPICEQCGLGCYSVLVAQGIKGF"
     gene            complement(1584..1868)
                     /locus_tag="VFX26_05050"
     CDS             complement(1584..1868)
                     /locus_tag="VFX26_05050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573877.1"
                     /translation="MENTVIKHVKGLSPDATRYQKKMHFKYGGIVKILRYIEYDKKHG
                     VTNDDIVAIIEKLRSDSSYEEIRSNEGFHDRLKEIESSVANTPATKILTK"
BASE COUNT          692 a          357 c          384 g          694 t
ORIGIN      
        1 acattacctt cagaaaaatc aggttctagt ttaataatga cagcaacatt taacaaatct
       61 tgcttcatta tagatcatct caatataatt cttgattttc cggcatttcc aattatcgtt
      121 gagactactg taataggccc attacttccg aaataggatt ttgagccgtt acccgaaggt
      181 gactccttca aacaatcgtc ttttctgtac gatatcatgc atacaatacc tttaattatt
      241 atatttagga gataaaaaac atggtagatc tcatttatgg acgcggtata accgatttag
      301 tgcgtgaatt tcctttttat ctgacattct ttcgaaatat tattgatata agggtatttc
      361 ataagaagcg gactttgtat ggttctgctg acataattaa cgtatgcaac cttcactgtt
      421 cacactgcta ttggtggctc aatcgggaag atgaaaacaa tgaactgagc gtagacaatt
      481 ggagatcgat aataaggaat actttcaaga agcaacgtct tattggagtc acgctggtgg
      541 gaggtgagcc aaccatgcgt cccgaagtaa ttgatgtatt ctgccaagaa atgcctggta
      601 gggtttctgt ggtaacaaat ggaacctttc ccctaaagag gtttgatgat ctatattttt
      661 actggatatc acttgacggt acagaaaagg tgcatgacac cataagaggt caaggttcct
      721 acgccaagac gcgcaatacc attctggagt acatatctgg accgccaaga aaaggcaaac
      781 cggcttggaa agacatatgg atatcaatga ccattaattc attgaattat catacagtca
      841 cagatctagt tgaagaatgg aggaataaaa tcaataagat tggatttcaa tttcacactc
      901 cttttatgaa agatgatcca ttatggttac cttttggaga aacaagaaat gaagttgttg
      961 ataaaattat ttcaatcagg aaaaaatatc ccaagtatgt agtaaacact gagaaacaaa
     1021 tttctctaat gaaaggaaac tggggtggta atggcacaac cccaatccag tgtccttcat
     1081 gggcaatact ttctttggac cacaagggca ggaccaaaca accatgttgt ataggaagtt
     1141 ctgattcaaa aggactgaaa cctatctgtg aacaatgtgg acttgggtgc tactctgtgc
     1201 ttgtagcaca aggcattaag ggattttaat catctcacat tgtccggact aatttgttgt
     1261 catgtcatgt aatatgttag tcatacagat gtaaagtttt tatcaaaaaa ttagatgatt
     1321 ctcttgtgtt attagtttaa attagtttgg tattatgaac aattaacggt cgccattggt
     1381 tagagtatcc agaagaatcc tccgctttaa tttgtcacat gattataagg atgatcatgc
     1441 atcaattgac ataaacaagt ttgtatatgg tagaaaaatt aaatacagtt gcgaaaaatg
     1501 caactcatca tttacaactt ggaaagcttt acatgagcat aaagtcgaga atcactcata
     1561 ctagtgtatt gcgattaagt tgactattta gttagaattt tcgttgcagg cgtattcgcg
     1621 actgatgatt caatttcctt taatctatca tggaacccct cattactacg aatctcttca
     1681 taagacgaat cagaacgaag tttttctatg attgcaacaa tatcatcgtt tgttactccg
     1741 tgttttttat cgtattcaat gtatcgtaat atttttacga ttcctccgta tttaaaatgc
     1801 atcttttttt gatatcttgt cgcgtcagga gataaaccct tgacatgttt aatgactgtg
     1861 ttttccatat gtttaatatg ccaatctttc atgggaaaat tatttcgagt caaaagaatc
     1921 aataatattt gtattaaggg ttatataata tattattatt ttattatgga aaactgaata
     1981 aaaagtatca ttatgtgtta atattctcgt tattacatca acaactacta gacaacaggg
     2041 gtgattctaa aactagatct gctacaatcg aactagaacc ttttttacta atggtgatat
     2101 cactaaacat ttaatcatta ggtagtc
//
LOCUS       DASUMD010000184         4399 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1498721, whole genome shotgun sequence.
ACCESSION   DASUMD010000184 DASUMD010000000
VERSION     DASUMD010000184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4399)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4399)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4399
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1498721"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            56..706
                     /locus_tag="VFX26_05055"
     CDS             56..706
                     /locus_tag="VFX26_05055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia monooxygenase"
                     /protein_id="HEX5573878.1"
                     /translation="MVWLRRTTHYLFIVVVAVNSTLLTINAGDYIFYTDWAWTSFVVF
                     SISQSTMLVVGAIYYMLFTGVPGTATYYATIMTIYTWVAKGAWFALGYPYDFIAVPVW
                     IPSAMLLDLTYWATRRNKHAAIIIGGTLVGLSLPIFNMINLLLVRDPLEMAFKYPRPT
                     LPPYMTPIEPQVGKFYNSPVALGSGAAAVLSVPIAALGAKLNTWTYRWMAAWSKWD"
     gene            863..1012
                     /locus_tag="VFX26_05060"
     CDS             863..1012
                     /locus_tag="VFX26_05060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573879.1"
                     /translation="MSAKNNSAEEGITCDICGVPIDACTCSCPYCGERDSCECCLYDA
                     ATGGG"
     gene            1108..3030
                     /locus_tag="VFX26_05065"
     CDS             1108..3030
                     /locus_tag="VFX26_05065"
                     /EC_number="1.2.7.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020266864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018491 - 2-oxobutyrate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0019164 - pyruvate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0047553 - 2-oxoglutarate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:ferredoxin oxidoreductase subunit
                     alpha"
                     /protein_id="HEX5573880.1"
                     /translation="MIGGPQGSGVDSAANIFAKTCAKEGFHIFGKREFYSNIKGEHSY
                     FTIRISEKPVNSHLEEINMLVSFDAETVFRHADKVSPGGMIIYDLSLAETVLEEVATI
                     DFEANKRISKLLQDSGQSINLNGMLEFAKSRGCIVYGLPYFEMLETVAKNMNDPKLSK
                     ISRVVNVMAISASISLLGFKKDMLISAIQEVFGSKPKLLASNIEAARYAYSYIGTKYD
                     TKNIKYKITPKDALKDYLLLSGSQAAAIGKILGGCRFQTYYPITPASDESEFLESNQI
                     IDQVDGNNGSIVVVQTEDEIAAITMAIGASLTGVRAATATSGPGFSLMAEALGWAGMN
                     EVPLVVTMYQRAGPSTGLPTRHEQSDLLFAINAGHGDFPKIVLASGDIEESFYDSIKA
                     FNFAEVFQLPVIHLLDKAISSSIQTCKRFSNNLKIERGELKNTIDKNQGKGAAGHFQR
                     FKLSNSPISTRVPIGTENAIFWNTGDEHTEEGHISEDPENRNKMMDKRMKKLDLALEK
                     INQDDMAMSYDFDSDGKNVVVSWGSTKGAILEALEKLSEEGNKMKLIQIRLLHPFPTE
                     TVKKFLKDAKLIIDVEMNYTSQLGSLVQQNTGREIDYKIVKYNGRPMSTTEIYIALKA
                     ILSGNNERRIVLDGGT"
     gene            3017..3979
                     /locus_tag="VFX26_05070"
     CDS             3017..3979
                     /locus_tag="VFX26_05070"
                     /EC_number="1.2.7.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018491 - 2-oxobutyrate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0019164 - pyruvate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0047553 - 2-oxoglutarate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HEX5573881.1"
                     /translation="MAELKLADYKTTVHNDWCPGCGDFGILNAIQMALSDMQIPRHKA
                     VIFSGIGCSGKTPHFINVYGIHTLHGRVLPFAQGAKIANPDLEIIAVGGDGDGLGIGA
                     GHFVGAGRKNVDIPYLIFNNAVYGLTKGQASPTLRLGEKTKSLVTPNTSNSVNPIALA
                     LVSGFTFIARSYSYDVKHLKDTIKRAITHKGLAFVDVLQPCPTYDDIHTREWYQGVNN
                     QETGKATPRIYKIEETGYDGTIRDESDINTKMTKILEFSSEWGDKIPIGIFYQNELVP
                     SYHERIAENNKDYFAKPPSHQEISDSENKPIAKIDKILDKLQIN"
     gene            complement(4207..>4399)
                     /locus_tag="VFX26_05075"
     CDS             complement(4207..>4399)
                     /locus_tag="VFX26_05075"
                     /inference="COORDINATES: protein motif:HMM:NF014342.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DHHA1 domain-containing protein"
                     /protein_id="HEX5573882.1"
                     /translation="EDINSCIISIRGSNECKVHLGRIVNNLSSTLSGSGGGHEKACGA
                     VIPKEKFSEFIKQLDKKSR"
BASE COUNT         1436 a          760 c          895 g         1308 t
ORIGIN      
        1 taattaagaa tatcaaaata aaattttata tagaaccttt aggagacatt tggtaatggt
       61 ctggcttcga cgcactacac actatctatt catagttgta gttgctgtaa atagtacatt
      121 attgacaatc aacgcaggag actacatttt ctatacagat tgggcatgga catcattcgt
      181 agtattctca atatcccaat caacaatgct tgtagttggc gcaatctatt acatgctttt
      241 caccggtgta ccagggactg caacatatta cgcaacaatc atgactatct atacatgggt
      301 agccaaagga gcttggtttg cattaggata tccatacgac tttatcgccg taccagtctg
      361 gataccttca gcaatgctgt tagatttgac atattgggca acaagaagga ataaacatgc
      421 tgccattata attggtggaa cattagtagg actttcattg ccaatattca atatgataaa
      481 tctactgctg gtcagagatc ctctagagat ggcattcaag tatcctcgtc caacattgcc
      541 tccatacatg acaccaattg agcctcaggt cggaaagttc tacaatagtc ccgtagcgct
      601 aggatcggga gctgcggctg tgctgagcgt tccaatcgct gcattgggcg caaaactcaa
      661 tacttggaca tacagatgga tggccgcgtg gagtaagtgg gattaaaacc acatcctctt
      721 tcatttttat tttcttttat ttagaatttt aaatcagatt tcgtgtagta gttcttaatt
      781 cttaataacc aaaacgtatt ctaatagaaa atatttttaa tgcaaagtat aagttctagc
      841 tagctttctt ttatattaca agatgtccgc gaagaacaat tctgctgagg aaggtattac
      901 atgcgacatt tgtggcgttc caattgatgc atgcacctgt tcttgtcctt attgtgggga
      961 acgtgattca tgcgaatgct gtttatatga tgctgccaca ggcggcggat aatgatttta
     1021 tgttttatat atctattatt tgattaatag tttggagaag aaagtaattc attgtctttt
     1081 ttggctaatg tgaattctat atcctggttg attggtgggc cacaggggag tggtgtagat
     1141 tcagctgcaa atatttttgc taaaacatgt gcaaaagaag ggtttcatat ttttggaaag
     1201 agggaatttt attctaacat taagggtgaa catagctatt ttacaataag aatttcagaa
     1261 aagcccgtta attcccactt ggaagaaatc aacatgcttg tatcatttga cgccgagacc
     1321 gttttcagac atgcagataa agtatctccg ggtggcatga taatctacga tttgtctctt
     1381 gctgaaacgg tgttagaaga agtagctaca attgattttg aagcaaataa gagaataagc
     1441 aaattgttgc aggactctgg acaatctatt aatttgaatg gaatgcttga gtttgcaaag
     1501 tcgagaggtt gcatagtcta tggactgcct tattttgaaa tgttagaaac agtagcaaaa
     1561 aatatgaacg atcctaaact tagtaagatc tctagagtag ttaatgttat ggcaatatca
     1621 gcctctattt ctttgcttgg tttcaaaaaa gatatgttga ttagtgccat tcaggaggtt
     1681 tttggatcaa agcctaaact acttgccagt aacatagaag cagcaagata tgcctattcg
     1741 tacataggca ctaaatacga taccaagaat attaaataca aaataacgcc caaagatgcc
     1801 ctaaaggatt atctattgct ttcaggaagc caggccgccg caattgggaa aatattgggt
     1861 ggttgtagat ttcaaactta ttatccaatt actcccgcaa gtgatgaaag cgaattctta
     1921 gaatcaaatc agatcatcga tcaagttgat ggtaataatg gttctatagt tgttgtacaa
     1981 actgaagatg aaattgctgc aataaccatg gcaattggtg cttcattaac aggagttaga
     2041 gcagccacag ctacatctgg tcctggtttt tcacttatgg ccgaggccct cggttgggca
     2101 ggaatgaatg aagttccatt ggttgttaca atgtatcaaa gggcgggccc ttcaacagga
     2161 ttgcccacgc gacatgaaca aagtgatctc ttgtttgcca taaatgctgg acatggggat
     2221 tttccaaaaa ttgtattagc ttctggagat atcgaagagt ctttttacga ttctattaag
     2281 gcctttaact tcgcagaagt ctttcaatta ccagtaattc atttactaga caaggcaatt
     2341 agtagcagta tccaaacatg caaaagattt agcaataatc tcaaaatcga aaggggagaa
     2401 ttgaagaata ctattgacaa gaatcaaggc aaaggtgcag ccggtcattt tcaaagattt
     2461 aaactcagta attcgcctat ttctacgaga gtgccaattg gaacagaaaa cgcgatattc
     2521 tggaatactg gtgatgaaca cacagaagag ggtcacatat cagaagatcc tgaaaatagg
     2581 aacaaaatga tggacaagag aatgaaaaaa ctcgacctag cactggaaaa aataaatcaa
     2641 gacgatatgg ccatgtctta tgattttgat tcagatggta aaaatgttgt tgttagctgg
     2701 ggttccacaa agggtgcaat cctagaagca ttagaaaaat tatccgaaga gggaaacaaa
     2761 atgaaattga ttcaaattcg cctacttcat ccatttccta ctgaaactgt gaagaaattc
     2821 ttgaaggatg ctaaattgat tattgatgta gagatgaatt acacatcgca gttaggatca
     2881 ctcgtacagc aaaatactgg gagagaaatt gattataaaa ttgtgaaata taatggtaga
     2941 ccaatgtcca ctaccgaaat ttatattgcg cttaaggcta tattatctgg taacaatgaa
     3001 aggaggattg tattagatgg cggaacttaa actagctgat tataaaacaa cagtacataa
     3061 tgattggtgt cctggttgtg gagattttgg tatattaaat gcaatacaaa tggctctaag
     3121 tgatatgcag attccaagac ataaagcggt tattttttca ggaatcggtt gttccggtaa
     3181 aacaccgcat ttcataaatg tatatggtat tcacacttta cacggaagag ttttaccttt
     3241 tgcccaaggt gcgaaaattg ccaatccaga tctggaaatt attgccgttg gaggagatgg
     3301 tgatggtctg ggtatcgggg cgggacattt tgttggagca ggaaggaaaa atgttgacat
     3361 tccatatctc atatttaata atgcagttta tggcctcact aaagggcagg cttcgcctac
     3421 attgaggttg ggcgagaaga caaaatcact tgtgacaccc aatacaagca attctgtaaa
     3481 tcccatagca ttggcattag tctctggatt tacctttatt gcacgttcat attcctatga
     3541 tgttaaacat ctgaaagaca caataaaaag ggcaataacc cacaagggat tagcgttcgt
     3601 agatgttcta caaccatgtc caacatatga tgacatacac actagggaat ggtatcaggg
     3661 tgtaaacaat caggagacag gtaaggcaac gcctagaatt tataaaattg aggaaaccgg
     3721 ctatgatggt acgataagag atgaatccga tattaatacg aaaatgacaa aaatattaga
     3781 attttcaagc gaatgggggg ataagattcc aatcggtatc ttttatcaga acgaattagt
     3841 tccttcttat catgaaagaa ttgctgaaaa taacaaggat tactttgcaa agccgccctc
     3901 tcatcaagaa atatcggata gtgagaataa acccattgca aagattgata aaattttaga
     3961 taaacttcag attaactaag caaaagttgc gagatcaatg gttgcaagtc atcaacaatt
     4021 cggttcaaca gactgtttga gcagacacta ttgaattaaa gcatcacatt taaattgcct
     4081 tggcaatgat tcttggatta catcgaccaa accgatgggg aacatattct ggatgggctt
     4141 aatcgcctgt ccagaataat tattgtattc atctacaaaa attaaaaccc actattcggc
     4201 ttacctttat cttgactttt tgtctaattg ctttataaat tctgaaaatt tctctttagg
     4261 tatcacagct ccgcaagctt tctcatgacc tcctccactc ccagaaaggg ttgaagataa
     4321 gttgttaaca attctcccaa gatgcacttt gcattcattt gatcccctaa tggagataat
     4381 acaggaatta atatcctct
//
LOCUS       DASUMD010000185         2261 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1166522, whole genome shotgun sequence.
ACCESSION   DASUMD010000185 DASUMD010000000
VERSION     DASUMD010000185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2261)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2261)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2261
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1166522"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..212
                     /locus_tag="VFX26_05080"
     CDS             <1..212
                     /locus_tag="VFX26_05080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573883.1"
                     /translation="NATETTMGQAEEAANATANATETTMGQAEEALSSAANATANATE
                     AASNETGNPILDALKNIFGGITGDN"
     gene            complement(291..545)
                     /locus_tag="VFX26_05085"
     CDS             complement(291..545)
                     /locus_tag="VFX26_05085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573884.1"
                     /translation="MPNFSHDERLLLIQHCIYKYDSEEMLKEKLKGYFSTKEIESAID
                     TLIATQKIRRIGQDVLQNNESHTGMIPEIPENLRSIINNL"
     gene            678..2072
                     /locus_tag="VFX26_05090"
     CDS             678..2072
                     /locus_tag="VFX26_05090"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: protein motif:HMM:NF004938.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEX5573885.1"
                     /translation="MKFGGTAVDSGKKIVHIANLIKSYHDKGNEIIGVFSAVTGMTDE
                     ILNVSEYVLKRDKKKIKDFINKTRAIHVDIIQNCIRNKNYKAKALQVVEVLLEEMENI
                     LNGIVLLTEVTEKAMDYLLSFGERLLTPIVSYSLLDKGLDSVYLTGKEAGILTDSKFG
                     QARPLIDTTKIRVKYHIDPLLKENKIPVITGFIGADQNGNITTLGRSGSDYTATIIAV
                     CIEADEVWLWTDVNGLMTADPQIVKEAKVLKEVSFAEAIELSLFGAKYMHPRALEPVM
                     DTKIPIRIRNAFNLSNEGTIISKNPSKSSQKIVKSIIAIRNTALIDVSGGGMVGAPGT
                     AAKIFDALARKSVNIMMISQSPSESSISMVVKKDDLDTAITTLDLTLLDKVIKNVRVN
                     EDVAVVAVVGSGMRGIKGIAAKVFSSVSKNSINVIMIAQGSSELNLAFVVNNVDCEKA
                     VKSLHEAFMLTKVN"
BASE COUNT          786 a          374 c          434 g          667 t
ORIGIN      
        1 ctaatgcaac agaaaccaca atgggtcaag cagaagaagc tgcaaacgcc acagctaatg
       61 caacagaaac cacaatgggt caagcagaag aagctcttag ctcagctgca aacgccacag
      121 ctaatgcaac agaagcagca agcaatgaaa ccggcaatcc aatactcgat gcattaaaga
      181 acatatttgg cggaattacc ggggacaatt aaattcatgt cgcattagcg acgagtcata
      241 tttttattta attcagttct tttttagatt tctgggtgta actttactga ttacaagtta
      301 ttaattatcg agcgtaaatt ttctggtatt tcaggtatca taccagtatg actctcatta
      361 ttctgaagta catcttgtcc aattctgcga atcttttgtg tagcaattaa tgtatcaatt
      421 gcagattcaa tttctttggt agaaaaatac ccctttagtt tttctttcaa catttcttct
      481 gaatcatatt tatatataca atgttgtatc agcagtaatc gttcgtcgtg tgaaaaatta
      541 ggcatagaga aatatcagat ccaaccaaat aaaaatcact ctcttgtttt aattactttc
      601 tcaaatgcac tcaaaaaggt aacaatacat gtattaatct gtattatcat tatagcttgt
      661 cataaatgcg cctggtaatg aagtttgggg gcactgccgt agattcggga aaaaaaattg
      721 tccatattgc taatttgatc aagtcatatc acgataaagg taacgaaata attggagttt
      781 tttctgcagt aacaggcatg accgatgaga tcttgaacgt gtcggaatat gttttaaaac
      841 gtgataaaaa aaagatcaag gattttatca acaagactag agcaatacat gtggatatta
      901 tacaaaattg tattagaaat aagaactaca aagccaaagc cctccaagta gtagaggtac
      961 ttctggagga aatggaaaat atattgaatg gtattgtatt gctgacagaa gtgactgaaa
     1021 aagcaatgga ttacttactt tcttttggag aacgactttt gactccaata gtttcctatt
     1081 ctctattaga caagggtctt gattccgtat acttgactgg gaaggaagct gggatattaa
     1141 ctgattcaaa atttggtcag gcgcgaccac ttatagacac tactaaaata cgagtaaagt
     1201 atcacattga tccactatta aaagaaaata agattcccgt tattaccggc tttattggtg
     1261 cagatcaaaa tggaaatatt actactttgg gaagaagtgg ctcagattac actgcgacaa
     1321 ttattgcagt atgcattgag gctgatgaag tttggttatg gacggacgta aatggtctta
     1381 tgactgcgga tccacaaatt gtaaaagaag ctaaagttct caaagaagta tcatttgcag
     1441 aggcaattga attatctcta tttggtgcga agtatatgca tcctagagca cttgagccag
     1501 ttatggatac aaaaattccg attcgaataa ggaacgcatt taatctatca aacgaaggaa
     1561 caataatttc aaaaaatcca agtaaatctt cccaaaaaat cgtcaaatca ataatcgcta
     1621 tccgcaatac tgcactgatt gatgttagcg gtggaggaat ggtcggtgca cctggaactg
     1681 cagcaaaaat ttttgatgcc ttagcaagaa agagtgtgaa tataatgatg atctctcaga
     1741 gcccttccga atccagcatc tcaatggtag taaaaaagga tgatttagac actgccataa
     1801 ctacgttgga tctgacgcta ctcgacaaag ttataaaaaa tgttagagtc aacgaagatg
     1861 tagcagtggt agcagtagta ggttcgggta tgagagggat taaaggaatt gcagctaaag
     1921 ttttttcatc ggtctcaaaa aatagcataa atgtgatcat gatagcccaa ggatcctctg
     1981 agcttaattt ggcttttgtt gtgaataatg tcgattgtga aaaagcagta aaatcattac
     2041 atgaagcatt catgctaact aaagttaact gaccattccg aaatttccct gtaaattaac
     2101 tatgttaaat gataatatcc agcatgataa tttgtgtaaa cagtcaatat taaaatacaa
     2161 ttgggatcga atagatacaa ttgtacaaat ttgctcatat aactgattgc catttaggat
     2221 cttggagaaa tcccaagctt agagatttga atttgcaagc a
//
LOCUS       DASUMD010000186         4309 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_614237, whole genome shotgun sequence.
ACCESSION   DASUMD010000186 DASUMD010000000
VERSION     DASUMD010000186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4309)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4309)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4309
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_614237"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..342)
                     /locus_tag="VFX26_05095"
     CDS             complement(<1..342)
                     /locus_tag="VFX26_05095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573886.1"
                     /translation="MMEDQGQNQDVQEKKLRGSGGYVLAHVTDEEQKKGNLGGPELFL
                     AGIGRLPSDRFVKYHCNKCDKDYEGSPNINFENPNEDLGEGVTLYEKGEYKCNTCKSI
                     IAQYRKFDAPED"
     gene            606..1883
                     /locus_tag="VFX26_05100"
     CDS             606..1883
                     /locus_tag="VFX26_05100"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEX5573887.1"
                     /translation="MVSFEELGLNTSIVKAVKEIGMEKPFPIQEHCIPLILKGKDVIG
                     QAHTGTGKTAAFCLPLISKVKSKGPIQALIIVPTRELAIQVTSEIRKFSKYMGIRSLA
                     IYGGQSINIQKEQLRRGIQVIVATPGRLIDHLKHGTIQLEDVNFVVLDEADRMLDMGF
                     IDDIKFILFYVNERRQTCLFSATMPIEIIRLSREYMKDPEQIRLNEDEISLETIDQSY
                     LIVEEREKFKHLCNFIRNREKGQQTIVFVATKQRTQRIADDLNREGFRVITIHGDLSQ
                     RQRDYSMNRFKNGSDDILVATDIAARGIDVPAVGNIINYDIPEDPLVYFHRIGRTARA
                     GGSGKAISLVSSSRYEDFARILKRTELSVKRLNDEIGIEVPTLYVSRNRVNRQRSFNP
                     NSQSRRRFGYSRGVNRGRPQYSRQYSNSTYRRG"
     gene            2021..2353
                     /locus_tag="VFX26_05105"
     CDS             2021..2353
                     /locus_tag="VFX26_05105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573888.1"
                     /translation="MLSRTSKYITLATVLYLVAFFAFASGLVNSIIEGARSREFVIPS
                     RSVQTIGETIVIVMILFMGMFGAYLLYNSGKAASPKSQWAFMTGGFTVLTIALIVGFS
                     IVKLKIAV"
     gene            complement(2350..3012)
                     /locus_tag="VFX26_05110"
     CDS             complement(2350..3012)
                     /locus_tag="VFX26_05110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573889.1"
                     /translation="MLDSRGFNTLIYDDAYAKICLIASIISEFQNQSNRVTRGKIVYL
                     DLDAAFTSYVKAGLIPSLEIQRIDDYIYQSDSSALKIYLPSEDIFDIIMVDIIRSMNE
                     CSLIIFDSINSFNNLFYDKSLHSLNNKLKIGNLNQLLYFILMMILKHASESNIPFLVT
                     SMIRYKRKEVVTSNRLLSKKSSFNFYVKIKNLNDLSITILGDPKVNQKNLIMKDKVLR
                     WT"
     gene            3060..4265
                     /locus_tag="VFX26_05115"
     CDS             3060..4265
                     /locus_tag="VFX26_05115"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEX5573890.1"
                     /translation="MDYDEAKENDIDIIRKDFPVTKKKIYLNCGSFAPTPLSTIKSIT
                     DFLVRCSDEGPDSSSVQEYITLLMKDLRTILSQLINCEPEEIIFTQSTTEGLNYVASG
                     IKWKKSDIVIARGGLHEHYANYIPWLNISKKYGLKLEEIKIDKNGFFDLDTIDKIAKN
                     KNTRLITLSHVLYNSGAIMPVEEVGKIAKRQNLLYSIDAAQSVGTINVDVKKIGCDFL
                     AFPGFKWICGPPGIGIFYCKKESASLLTPKYIGGESAIITGEKNLVYSESPQKFQTGF
                     RNYLGIAGLTSSLKYIQNLGVNEIRKMNMKVANEIIEEIRKIPGISIFGPKDEKLRSS
                     IVSFAIDSVSPKVMVSRLEKNGIIVAERDIVGGGKKKAVRASPHFFNTTNEVSTLVQN
                     IKNIQNMFG"
BASE COUNT         1497 a          694 c          788 g         1330 t
ORIGIN      
        1 atcttctgga gcatcaaatt ttctatactg cgcaattata cttttgcaag tattgcattt
       61 gtattcgccc ttttcataga gtgtcacgcc ttcaccaaga tcttcattag gattttcaaa
      121 attgatattc ggtgatccct cgtagtcttt atcgcatttg ttacaatgat acttgacaaa
      181 cctgtcagaa ggaagccttc ctatccctgc cagaaataac tccggtcctc ctaaattgcc
      241 ttttttttgc tcttcatctg taacatgcgc aagtacgtat ccaccagaac cgcgtagttt
      301 cttctcctgc acatcttgat tttgaccctg atcctccatc atatttttta ttatcacttg
      361 tgtagaattt aagttatcaa ctctaaccta tactcatcag atttaatggt cgtgcagaat
      421 agagacttga gagaaagggt taatttcaat taccatgatc aaactttttt atcatcacac
      481 ttatatctcc cataaaagct cattaactta acttaaggtg cggcagataa gttaagtaaa
      541 acaaaaaatc tttccagatc ttccgtaact tttgtcaaat acaaaacaaa atgtgaatta
      601 gaaaaatggt ttcattcgaa gaattaggtc taaatacgtc tatagtaaag gcggttaaag
      661 aaataggaat ggaaaagccc tttcctattc aagaacattg catcccactt attttaaaag
      721 ggaaagatgt gataggacag gcacatacgg gtacgggcaa gacagctgct ttttgtcttc
      781 ctctaataag taaagtaaag tcaaaggggc caatccaggc attaattatt gttccaacaa
      841 gagaactggc catacaagtt acaagtgaaa ttaggaaatt ttcaaaatat atgggaataa
      901 ggagccttgc catttacggt ggacagagta ttaatataca aaaagaacag ctgagaagag
      961 gaatccaagt tattgtagct acaccgggca gattaattga tcacttgaaa cacggtacga
     1021 ttcaattaga agatgtaaat tttgtagtgt tagatgaagc tgatagaatg cttgatatgg
     1081 gatttattga tgacataaaa ttcatacttt tctatgtaaa tgaaagaagg cagacatgcc
     1141 tattttcagc aacaatgcct attgaaatta taagactttc tagagaatat atgaaagacc
     1201 cagaacaaat taggctcaat gaagacgaaa ttagtttaga aactattgat cagtcttatc
     1261 tcattgtgga agagcgagaa aaattcaagc atctctgtaa ttttatcaga aatagggaaa
     1321 aaggacaaca aactattgta tttgttgcta caaaacaaag aacccagaga atagctgatg
     1381 atttgaacag agaaggtttt cgagttatta caattcatgg agatctatct caaagacaga
     1441 gggattactc tatgaacagg ttcaaaaatg gaagtgatga tatacttgtt gctacagata
     1501 ttgctgcaag gggcatagat gtcccggccg tgggaaatat tatcaattat gatattcctg
     1561 aagacccatt ggtttatttc catagaattg gcagaacagc acgagcaggt ggaagtggca
     1621 aagctatttc attagtttca agtagtagat atgaagattt tgcaaggatt ttgaagcgaa
     1681 cagaattatc agtcaagaga cttaatgatg aaataggaat tgaagttccc acattgtatg
     1741 tcagcagaaa tagagtcaat agacaaagat cctttaaccc caatagtcaa agtaggagaa
     1801 gattcggata tagcagagga gttaataggg gtcgaccgca gtatagcaga cagtatagta
     1861 atagcacata tagaagagga taagtaaata taaataattt tttagaaaaa tatactctat
     1921 tttcaacaag aaaaatagaa acataaagaa aagatataat gaaaatcagt taacaaattt
     1981 ttcgataaat ttaattatta ttcattatac ttgtaactgg atgctttcta gaacttcaaa
     2041 atatatcact cttgctaccg tactttatct ggttgctttt tttgcatttg cttcaggatt
     2101 ggttaattca attatagaag gtgcgcgatc aagagaattt gttattccat caagatcagt
     2161 acaaactata ggcgagacta ttgtaatagt tatgatactt tttatgggaa tgtttggtgc
     2221 atatttgctt tacaattcag gaaaggcagc atcaccaaag agtcagtggg catttatgac
     2281 tggaggattt actgttctca ccatagcatt gatcgtcggc ttcagtatag ttaagctcaa
     2341 gatagctgtt taagtccatc tcagaacctt atccttcatt atcaaatttt tttgattaac
     2401 tttcggatca ccgagaattg taattgatag atcattaaga tttttaattt taacataaaa
     2461 attaaatgaa cttttcttac taagaagtct gttgcttgta actacttcct ttctcttata
     2521 acgaatcata ctcgttacca aaaatgggat attagattca gatgcatgtt ttaatatcat
     2581 catgagaata aaataaagta attgatttag atttccaatt tttagtttat tgtttagact
     2641 gtgtaggctc ttatcataaa aaagattatt aaatgaattt atagaatcaa aaataattag
     2701 ggaacattca ttcattgatc ttattatatc aaccatgata atatcaaaga tatcttcaga
     2761 cggaagatat attttcagag cgcttgaatc agactgatag atataatcat ctattctttg
     2821 tatttccaag gagggaatta atccagcttt aacataagaa gtaaaagctg catcaagatc
     2881 caggtaaact atcttaccac gagtgactct attactttga ttctgaaatt ccgatatgat
     2941 cgatgcaatt agacatattt ttgcataagc atcatcataa atcagcgtat taaatcctct
     3001 gctgtccagc atttcagaaa tcataatttt attataatga attattaaaa ggggttataa
     3061 tggattatga tgaagcaaag gaaaacgaca tcgatataat acgcaaggat tttccagtta
     3121 cgaaaaagaa gatctatttg aactgcggat cgtttgcacc aacaccatta tccacaataa
     3181 agtcaattac tgattttcta gtgagatgct cagatgaagg ccctgactcg agctctgttc
     3241 aagagtacat tacattacta atgaaagacc ttcgaactat tctaagccag ctcatcaact
     3301 gtgagccaga agaaataatc ttcactcaaa gtactaccga gggattaaat tatgtagcat
     3361 caggtattaa gtggaaaaaa tccgacattg ttattgcccg aggtggtctt catgaacact
     3421 atgctaatta catcccatgg ctgaatattt ctaaaaagta tggtctaaaa ttggaagaga
     3481 taaagattga taaaaacggg ttcttcgatc ttgacacaat tgataaaatc gcaaaaaaca
     3541 agaatacaag gctcataacc ctgagtcacg ttctttataa tagtggggcg ataatgccag
     3601 ttgaagaagt gggcaaaatt gcaaaaaggc aaaatttgct gtattcgata gacgctgctc
     3661 agtctgttgg tacaattaac gtggatgtaa aaaaaattgg ttgtgatttc ctggcctttc
     3721 caggtttcaa gtggatatgc ggtccacctg ggattgggat attttattgc aagaaagaat
     3781 ctgcctcact gctaactccc aagtatattg gaggggaatc tgcaattatt actggtgaaa
     3841 aaaatctagt ttattctgaa tcaccccaaa aatttcagac aggttttaga aactatcttg
     3901 gaattgctgg ccttacatcc tccttaaagt acattcaaaa cttgggtgta aatgaaataa
     3961 gaaaaatgaa tatgaaagtg gccaatgaaa taatagagga gataagaaag atacctggta
     4021 tctcgatatt tggacccaaa gatgagaagc tcaggtcatc aattgtttct tttgccatag
     4081 attcagtgag tccaaaggtt atggtatcca gattggaaaa aaatggaata attgttgcag
     4141 agagggatat agttggaggg ggaaagaaaa aagcggtaag agcatctcca cattttttca
     4201 ataccacaaa cgaggtatcc acacttgttc aaaatattaa aaatattcag aacatgtttg
     4261 gttgattttt tttatccttt cctgcctgac cttcaattac tatcatggt
//
LOCUS       DASUMD010000187         2904 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_285051, whole genome shotgun sequence.
ACCESSION   DASUMD010000187 DASUMD010000000
VERSION     DASUMD010000187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2904)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2904)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2904
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_285051"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..573
                     /locus_tag="VFX26_05120"
     CDS             <1..573
                     /locus_tag="VFX26_05120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX5573891.1"
                     /translation="LTLLLKKEIDGAWVPEPWGEKLIKEGNSRLFLDERTLWPDGKFV
                     TANIIVNPEYLQQNPDVIRKLLAAHVNETQWINSHKEEALTTFNTQLKSLTGQTIPED
                     QLTEAFSRLELTNDPIKQSLFKSAKDAFSVGFLGKTEPDLSGIYDLTILNEVLKSKGL
                     VEIDGIGGEAKIVDNTNKSGQTNVTNNPIQ"
     gene            complement(653..1897)
                     /locus_tag="VFX26_05125"
     CDS             complement(653..1897)
                     /locus_tag="VFX26_05125"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEX5573892.1"
                     /translation="MNGQTSGNSQEIEPTELKKKIDNHENIFILDVRTPQEYDAWKLS
                     YENHQNPKLIPVDRLFLNDSNLLREIPKDKEIVTLCAHGNRSMMAARLLNQLGYNVKS
                     VRGGMAGWNKVYDVAEVPVPKEAPFRIWQIRRISKGCMGYIVSSKEDNTAVAIDPSRE
                     IYEAFLSVARENGLKIIKVVDTHQHADHVSGVAKLARAISEEGNMETLAYFSSLEEYE
                     SENTEINIRYLKDGDEIEVSKKISLRAIHTPGHTNGSISFLIKYANDTDGKKSTEDPP
                     HYSYLFTGDTLFVDSVGRPDLREEAKKYASLLYQTYHQKIVNLPENTLILPAHFNASS
                     IALKHAEPICETIGSLKKKIKLLSMNEDEFVHLVTDTLPSRPMNYKTIIDINKRMLAF
                     DDMQMPDLEAGPNSCAVSLEPK"
     gene            2124..2681
                     /locus_tag="VFX26_05130"
     CDS             2124..2681
                     /locus_tag="VFX26_05130"
                     /inference="COORDINATES: protein motif:HMM:NF013936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEX5573893.1"
                     /translation="MNATKDLKQDHILVNRLGKVAKKCSDLLYDNEDIPTEDIKIISL
                     LIQEFVDKFHHGKEEKAYFPQVNDKNNFSEDIRKFLIEHELGRRIAKMLAQSLISWDG
                     GIDSRERVARFLNAYSVFIAIHTEKENIFFDLIEERGSLSEEEHSLLLKHYKTCHNDV
                     GGKVRVEQMTKLIGYLEERNWMNMK"
BASE COUNT          931 a          513 c          542 g          918 t
ORIGIN      
        1 ttgacattat tactaaaaaa agagattgat ggtgcctggg ttcctgaacc gtggggtgaa
       61 aagctgataa aggaaggaaa tagcagactc tttctggatg aacgcacctt atggccagat
      121 ggaaagtttg tcactgcaaa cataattgtt aatccagaat atcttcaaca aaatccagat
      181 gtcataagaa aattattagc tgcgcatgtt aatgagacac agtggataaa ttcccataaa
      241 gaagaggcat taactacttt caatacgcag ctaaaaagtt tgaccggaca gactatccca
      301 gaagatcagc ttaccgaggc cttttctaga ttggaattaa caaacgaccc tataaaacaa
      361 tcattgttca aatccgcaaa ggatgccttt agtgtaggat ttcttggaaa aactgaaccc
      421 gatctgtctg gcatctatga tcttaccatt cttaacgaag tcttgaagtc gaagggttta
      481 gtggaaatcg acggcatcgg tggagaggct aagatagtag ataatacaaa taaatcaggt
      541 caaactaacg ttaccaacaa tcctatacag taaagctatt cagcaagaaa aacagatcag
      601 ggtttaactt catacctctg gcactagagt aacaggaaga aatggagata gattattttg
      661 gttctagaga tacggcgcag gaattaggac ctgcctccaa atcaggcatt tgcatgtcat
      721 caaaagctag cattctcttg ttgatatcta taattgtctt gtagttcatt ggtcttgatg
      781 gcaaagtgtc agtaacaaga tgaacaaatt catcctcatt cattgagaga agttttattt
      841 ttttctttag tgaaccaatt gtttcacata tgggttctgc gtgctttaat gcaattgaac
      901 ttgcattgaa gtgagcaggg agaatcaaag tattttctgg caaattgact attttttgat
      961 gatacgtttg gtacagaagt gaagcatatt tcttggcttc ttctctcaag tcaggtcttc
     1021 ctacactgtc aacaaataac gtatctccag tgaataaata tgaataatgt ggcgggtctt
     1081 ctgtactttt ctttccgtca gtatcattag catattttat caaaaaggaa atactaccat
     1141 ttgtgtgacc gggcgtgtga attgctctta gcgaaatttt ctttgatacc tctatctcat
     1201 ctccatcttt tagatagcgg atattaattt ctgtattttc gctttcgtat tcttcaaggg
     1261 agctgaagta agctagggtt tccatatttc cttcttcaga tatagctctg gctaactttg
     1321 ctactccaga aacatgatcg gcatgttgat gggtgtcaac tacctttatt attttcaatc
     1381 cattctccct tgcaacactc agaaaagcct cataaatctc gcgacttgga tctatcgcca
     1441 cagctgtatt atcttctttt gaagatacaa tatatcccat acatcccttt gatattcttc
     1501 ttatctgcca aattctgaat ggagcttcct taggaactgg aacttcggca acatcgtaaa
     1561 ccttattcca gcctgccatt cctcccctaa cgctttttac gttatatcct aattggttga
     1621 gtaaccttgc cgccatcatt gacctatttc catgagcaca aagagtaaca atttctttgt
     1681 cttttggaat ctcccttagt aaattggaat cattcaaaaa taaacgatca acgggaatta
     1741 acttgggatt ttgatgattt tcgtaggaca atttccaagc atcatattct tggggagtac
     1801 gaacatccag aataaaaata ttctcatgat tatctatttt cttttttaat tcagtaggtt
     1861 ctatttcttg actatttcct gacgtttggc cattcatatg tgatagtaga aaactaatca
     1921 tatttgtagg tttaaattat aaccccaagt aggtcgcagg atacaactat tttcaaaagt
     1981 tgaataaact atggaggaga attgaatatt aaataaatat taataagcaa tgtggccata
     2041 cccgaagcat ttcttgtcat ggtttgtgag tatcttaaaa tttgatattt ttttatctta
     2101 tgactaataa gtcctgaata gctttgaatg ccaccaagga tctaaaacaa gaccatattc
     2161 tagtaaatcg tcttggtaag gtagcaaaga agtgttctga tctattatat gacaatgagg
     2221 atattccgac agaagatatc aaaataatat ccttgcttat tcaggagttt gtagataaat
     2281 tccaccatgg caaggaagag aaagcgtatt ttccacaagt gaatgataag aataactttt
     2341 ctgaagatat tcgaaaattc ttgatagaac atgaacttgg tagacggatc gcaaagatgt
     2401 tggcccagag tctaatatca tgggatggtg gcattgattc aagagaacgg gttgcgagat
     2461 tcctaaatgc atactcagta ttcatagcta tacacactga aaaggaaaat atattttttg
     2521 atctaatcga ggaaagaggt agtctctctg aagaggaaca ttcactatta ttgaagcatt
     2581 ataagacttg tcataacgat gttggaggta aagttagagt ggaacagatg acaaagctca
     2641 taggatatct tgaagaaaga aattggatga atatgaaata acttcacacc ttctgaatac
     2701 taatagccgc caagtttaat gaacaatatg ttagagaatg gcaaggtgga atgtgcaatg
     2761 gtaacaagaa atattatcaa atatgatacc tcgacaagga aatactatct tcctagagag
     2821 cattctgctt tcctgacaag aaaatcgcta tgggccattc atttccgatc attgtatcaa
     2881 atatttttct tcagctcagt attt
//
LOCUS       DASUMD010000188         8238 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1168404, whole genome shotgun sequence.
ACCESSION   DASUMD010000188 DASUMD010000000
VERSION     DASUMD010000188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 8238)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8238)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8238
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1168404"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..396)
                     /locus_tag="VFX26_05135"
     CDS             complement(<1..396)
                     /locus_tag="VFX26_05135"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase"
                     /protein_id="HEX5573894.1"
                     /translation="MFAIIHMDDVVRIPPNMMKKSLNETTMEILKEKYESMINPELGY
                     VIMIIDAKTNKVGKLVSGDGATFHKVSFKALTFYPKMQEIVEGEIVEITDFGAFVRIG
                     PTDALLHLSQITDDYLKSDVKQGVIVANQS"
     gene            517..1623
                     /locus_tag="VFX26_05140"
     CDS             517..1623
                     /locus_tag="VFX26_05140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0140663 - ATP-dependent FeS chaperone
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HEX5573895.1"
                     /translation="MVSIEQIMAKLQTIEDPELHKDIVSMGMIKDLAINNGKVGFTLE
                     LTTPACPFNSEIEESVRNSMTDLGIKDLDLKVTARVMEGRSISMDELLPGVKNILAIA
                     SGKGGVGKTTVSVNLALALSKTGAKVGLLDADIYGPSVPLMLGLKNAPEVVNNKIEPV
                     LAQGVKVISMGFFYEQSQQAGIYRGPIVAGIVKQFLTDVNWGDLDYLIIDLPPGTGDA
                     PLTLAQTIPITGIIIVTTPQDVAMNVAAKAVGMFNKLNVPIIGVIENMSYLECQHCNN
                     KINIFGTGGGQKISDQFNVPFIGEIPLHQQIMSASDSGNPVTTAEPNDNQAVIFDKIS
                     RTVAGRISIIASELQEQEKTANEQSKEHQSVNTA"
     gene            1607..2167
                     /locus_tag="VFX26_05145"
     CDS             1607..2167
                     /locus_tag="VFX26_05145"
                     /inference="COORDINATES: protein motif:HMM:NF015952.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-dependent dephospho-CoA kinase family
                     protein"
                     /protein_id="HEX5573896.1"
                     /translation="MSIPPDVLAELKKPLGKLILDSDITERKIRKEIAGIKHKIITVG
                     DRSTERFISFDIYPDLAIIDGVERRQEKGATLADRILGLKAKDVTRISCINPAGTITQ
                     GAITKIRFALSSEKNFILQVVGEEDLLTLPVCFFAPTNSLVCYGQPLEGLVLIKVNNS
                     MRRKAKELMKSINNKLLTGYDDVVAV"
     gene            2532..3608
                     /locus_tag="VFX26_05150"
     CDS             2532..3608
                     /locus_tag="VFX26_05150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin biosynthesis protein"
                     /protein_id="HEX5573897.1"
                     /translation="MSSKVAIVCITKNGINISKRIKEKIPSASIYAQSKHKDSSDGII
                     WFEKNTKIMIEEIFKEYDSIICIFSLGAVIRLISNLLVDKKTDPAVIVIDDKANFVIS
                     ALSGHLGGANSLSKHIADILNSTAVITTAADVNETIAVDLLGNDFKWRIENFENVTKV
                     SAHMVNEEKIGVYQDTGETKWWNKELPKNVTIVEDIDELKSDNFRAGLIISDRIITDS
                     LLIGKSVIYRPKSLVVGLGFHWDTTQNDIEDGIMKVLKENGLSFLSIRNLSTIDRGKS
                     PTSLGSFSDKHGIPLEFFEKTKLNKIMVPNPSDVVKKYEGTSSVSEASSILSSGGELI
                     ITKQKFPPNLTVAVCRINFPKAGI"
     gene            3610..4377
                     /locus_tag="VFX26_05155"
     CDS             3610..4377
                     /locus_tag="VFX26_05155"
                     /inference="COORDINATES: protein motif:HMM:NF017944.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sirohydrochlorin chelatase"
                     /protein_id="HEX5573898.1"
                     /translation="MNRALLIIDRGSREPEAKEELAQLCTMIKEESEYVYVDHCFLEV
                     IPPYIEEGINRCISNNADFITVMPYFLYPGMKLKDSVKKTARICYDRKIKVVITKPLS
                     YHSTLDSLIKDRILSAREKYKIALADDKCDILVIGHGSSDRSARTAFVHTVNKLKPDF
                     RSVTFCFLELDEPGIANGIEKIISSNPNILIIVPYFLHKGAHIKNDVVKDINSALANY
                     NLGNIQVYTTEHFGVDPKLVKLVLERAKEAEGKVGRK"
     gene            4364..5056
                     /locus_tag="VFX26_05160"
     CDS             4364..5056
                     /locus_tag="VFX26_05160"
                     /inference="COORDINATES: protein motif:HMM:NF014612.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-8X methylmutase"
                     /protein_id="HEX5573899.1"
                     /translation="MAESNDTMKRAMRAKSRDMSESSLGIEENSMKIIELEIGTHSYS
                     ELEWNVVRRVIHATADFDFAKPDKNRIIFSTNAIENAFEAFKKKRHIVVDVDMVQSGI
                     NKKSVAKIGTTLICNISNKEVIDISKKENKTRSTMAMRYSSKEIDGGIVVIGNAPTAL
                     YEVIKMINENIVKPLLVIGIPVGFVSAAESKSELSKTNVDFITNIGRKGGSSAASSII
                     NALMLMYISNLN"
     gene            5062..6018
                     /locus_tag="VFX26_05165"
     CDS             5062..6018
                     /locus_tag="VFX26_05165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573900.1"
                     /translation="MNTKAAHTAEHAFIGSLQKILNKTLSVRKVEHKDSYNIAFIRAS
                     EIELDFEKIASAEKEVNQLILEGRKILHHSFSSLNEAKKVFPNLRANETRLENADTIT
                     VVEIENHDLSACSMDHVNSLSECKFLLVTNMSMNESDYEIRFMVGKNAMDEAIRITEK
                     INNISNQVGANYNTVEATIKKLYYEREQYYNRLKKLTNKTLADIPDQNFDKQNINVIT
                     AILDDMDWRIIQNFAGEKILEERTVVILVNIVDNDMANLVFARSNDVNLDCVKIFEDL
                     RNDENIGSGGGKANFVNAKIVRSRSNKVIQALINKSLESISP"
     gene            complement(6195..7328)
                     /gene="dinB"
                     /locus_tag="VFX26_05170"
     CDS             complement(6195..7328)
                     /gene="dinB"
                     /locus_tag="VFX26_05170"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF002677.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HEX5573901.1"
                     /translation="MNENISLNDIGKKIIFHIDFDYFFAQCEEIRRPELRNIPSVVCV
                     YSGREEDSGVVSTCNYEARKYGVKAAMPIRLAKSKLKDVEAIFLPTDMPYYHEISRNA
                     MKIIQNYGELFEQVSVDECYMDFTKITNSDFDDARIFAESLQKNIKDQIKLTCSIGVG
                     PNKLIAKIASGINKPNGITVVSQEDAKRFISNRKIEDIPGVGPKTSKKLESLGIESIS
                     DISKKSIFELRDSLGYKIATFLVNASNGIDYSQIKVRGTSKQIGKIVTLKKDIANFEQ
                     IKLTANNLCKSVYENLENKRQAFRVLTLILILENLQHVSFSKSLKLYTASFDELHKNS
                     LSIIHEMISNNSISLDNIRRMGIVVSDLKDISGQDSLLNYFEN"
     gene            7555..>8238
                     /locus_tag="VFX26_05175"
     CDS             7555..>8238
                     /locus_tag="VFX26_05175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573902.1"
                     /translation="MIQSLNQNKKYVLLSSILIMMLIASLESSILLTANAQSDEKSEK
                     SADSENSDETTEKSADSENSDADSSNKTEINVPVAKMVYQNKSYEMSPFVVMDNENLE
                     KINFPHLPDDFEPEVTISPEDPISFSFLTKPREINAFFVDYDADTTEMTPLHRVGKTQ
                     FSFGDVYGPNTLELRVIYPDGKYVTYTCLIEVDKPEVQEVALDSSNISTMSTDDNNIM
                     STDMLNSNNN"
BASE COUNT         2852 a         1347 c         1526 g         2513 t
ORIGIN      
        1 tgattgattt gcaactatta ccccttgctt gacatcgctt tttagataat catcggttat
       61 ttgagaaagg tgtaacagtg catcagttgg ccctattctt acaaatgcac caaaatcagt
      121 aatttcaaca atttcccctt ccacaatttc ctgcattttt ggataaaatg ttaatgcctt
      181 aaaagacacc ttatggaagg tggcaccgtc acctgaaacc aattttccga ccttatttgt
      241 ttttgcatca ataatcataa taacatagcc caattcagga tttatcatac tctcatattt
      301 ttccttcaga atttccattg tggtctcatt gagagatttc ttcatcatat tgggaggtat
      361 tcttacaaca tcatccatat gtattatcgc aaacattact tattgtgaat tggtttaaat
      421 tatcaattta tgaacctttt cattatttct tgatttgtag tatcaagatg cgtgacattg
      481 tatgatttaa atattctttg gaagagtacc ataaatatgg tctcaataga gcaaatcatg
      541 gcaaaattac agactataga agatcccgaa ttgcataaag acatcgtttc aatgggcatg
      601 attaaagacc ttgcaattaa caatggaaaa gttggattta cattagaact tactacccct
      661 gcttgtcctt tcaatagtga gatagaagag tcggttcgca attctatgac ggatctgggg
      721 attaaggatc tagatcttaa agtaactgcc agggtcatgg aaggacgttc tatttcaatg
      781 gacgagttgc ttcccggtgt caaaaatata cttgccattg caagcggtaa aggaggagtg
      841 ggaaaaacaa cagtatctgt caacctcgcc ttggcattat caaagaccgg tgcaaaggta
      901 ggtttattgg atgctgatat ttacggtcca agtgttcctc taatgctggg actcaaaaat
      961 gcacctgaag tggtcaataa taaaatagaa cccgttttgg ctcaaggagt aaaagtcatt
     1021 tcaatgggat tcttttatga acaatcacaa caagcaggaa tctatagagg tcctatagtg
     1081 gctggaattg taaaacaatt tctaactgat gtaaattggg gtgatcttga ttacttaata
     1141 attgatttac caccaggtac tggagatgca cctctaactt tggcacaaac aataccaata
     1201 accgggataa tcatagttac cactcctcaa gacgtcgcaa tgaatgtggc agcaaaagct
     1261 gtaggcatgt ttaacaaact gaacgtacct atcataggag ttatagaaaa tatgagttat
     1321 ctagaatgtc aacattgtaa taataaaatc aatatttttg gtactggtgg tggtcagaaa
     1381 attagtgatc agtttaatgt tccttttatt ggagaaatac ctctccatca acagataatg
     1441 tcagcaagcg atagcggtaa tccagtaaca actgcagaac caaatgataa tcaggcagtc
     1501 atatttgaca aaatttcccg aactgttgct ggaagaatca gcataattgc ttcagaatta
     1561 caagagcaag aaaaaacagc aaacgaacaa tcaaaagaac atcaaagtgt caataccgcc
     1621 tgatgttctt gcagaactaa aaaaaccatt aggaaagtta attctagata gcgatatcac
     1681 agaaagaaaa attagaaaag aaattgcagg cattaaacac aagataataa cggtaggtga
     1741 ccgttctacg gagagattta tttcctttga tatatatcct gacttagcga taattgatgg
     1801 agttgagaga aggcaagaaa aaggtgctac tttggctgat agaatacttg gtttgaaagc
     1861 taaagatgta actagaattt catgtattaa tcctgcagga accattacac agggagcaat
     1921 tactaaaatt agatttgccc tttcaagtga gaagaatttt atcttgcagg ttgtcgggga
     1981 ggaggattta ttgacacttc ccgtatgttt ttttgcacct actaactcac tagtatgtta
     2041 tggtcaacca ttggaagggc tagttcttat caaggttaat aattctatga ggcgaaaagc
     2101 taaagaatta atgaaatcaa taaataataa actattaacg gggtatgatg atgtggtggc
     2161 tgtttgaaat agaagtgatc gaaaaaacca taattttctg accccggtaa gttcattttt
     2221 gtgagttctt atggaagttt caaaattcta aaagctagtt tgtcgcacga cactagcatc
     2281 gctcagacat gacaggagca ctcgcatttc gacattttca catcaaaaga gcagtcgtgg
     2341 tccgagctac atgaatcgcc cattggccat tcacctggac attccgtatg ccgattcctc
     2401 ttacaaaaga aagttaatgt catctgaaat caattgcaat attgttgttt caatatttga
     2461 atttttatat tcttagagac catcaaatca acacaaagta tattatttga ataaatttta
     2521 taaagtaatg catgagcagc aaggttgcta ttgtttgtat tactaaaaat ggaatcaata
     2581 tatcaaaaag aataaaagaa aaaattccat cagcttctat ttatgcccaa tcaaaacata
     2641 aggattcttc tgatgggatt atctggtttg aaaaaaacac aaaaatcatg attgaagaga
     2701 ttttcaaaga gtatgatagt attatttgca ttttttcgtt gggtgctgtc atccgtttaa
     2761 tatcaaatct tttggtagac aaaaagacag acccggccgt tatcgttata gatgataaag
     2821 caaactttgt tataagtgcc ctttcagggc atctgggtgg tgccaactct ctatccaaac
     2881 acattgcaga tatcttgaat tcaacagccg taatcacaac agctgctgac gttaatgaaa
     2941 caatagcagt agatctttta ggcaacgact ttaaatggcg catcgaaaat tttgaaaacg
     3001 ttactaaggt tagcgcacat atggtaaatg aagaaaaaat aggggtttat caggataccg
     3061 gtgaaacaaa atggtggaat aaagaattac caaaaaatgt aacaattgta gaagatattg
     3121 atgaattgaa atcagataac tttagggcag gtctaatcat ttctgatagg attataaccg
     3181 actcacttct gattggtaaa tctgtaattt atagaccaaa gagccttgtc gtagggctgg
     3241 gatttcactg ggatacgact cagaatgaca tagaggatgg tataatgaaa gtgttgaagg
     3301 aaaatggttt gtcttttctt agcatcagaa atctctcgac catagatagg ggtaaatctc
     3361 ctacctcatt gggatccttt tcagataaac acggaatccc tttagagttt tttgagaaaa
     3421 cgaaattaaa taagatcatg gtcccaaatc cttcagacgt ggtaaaaaaa tacgaaggta
     3481 catcaagcgt gtcagaagcc tcatcaatac ttagctcagg tggtgagctt ataatcacaa
     3541 agcaaaagtt ccctcctaac ctcacagttg cagtgtgtag gataaatttc cccaaggccg
     3601 gtatttagta tgaatagggc tctgttaata attgatagag gcagcaggga acctgaggcc
     3661 aaagaggagc ttgcacaatt gtgcactatg attaaggaag aaagtgaata tgtctatgtt
     3721 gatcattgtt tccttgaagt tataccacca tacattgagg aggggattaa caggtgcatt
     3781 tccaataatg cggatttcat tactgtcatg ccatatttct tgtatcccgg gatgaagctg
     3841 aaagattctg taaaaaagac agctagaatt tgttacgata ggaagataaa agtagtaatt
     3901 acaaaaccgt tgagctatca ttccacactt gattcgctca taaaagatag aattctttcc
     3961 gctagagaaa aatataagat agcattggca gatgacaagt gtgacatact tgtaataggt
     4021 catggaagca gtgacaggag tgctagaact gcatttgtac acacggttaa taaactaaag
     4081 ccagatttta gaagcgttac tttttgtttt ctggaattgg atgaaccagg gatagcaaat
     4141 gggatagaaa aaattatttc aagcaatcct aacatattga taatagttcc atatttccta
     4201 cacaaaggag cgcacataaa aaatgacgtt gtgaaagata tcaactctgc attggcaaac
     4261 tataatctag ggaatatcca ggtgtatact acggagcatt ttggagtaga ccccaaacta
     4321 gtaaaattgg tacttgaaag ggcaaaagag gcagagggaa aagttggccg aaagtaatga
     4381 tacaatgaag agggcgatga gggcaaagtc cagagatatg tccgagtctt cgcttggtat
     4441 agaagaaaat agtatgaaaa tcattgaatt ggagatagga actcatagtt acagtgagct
     4501 agaatggaat gttgttagac gtgtcattca tgctactgct gattttgact ttgcaaaacc
     4561 tgataagaat agaattatct tttcgaccaa cgccatcgaa aacgctttcg aggcattcaa
     4621 gaaaaagcgt cacattgttg tcgatgttga tatggtacag tcaggtataa acaagaaatc
     4681 tgtagcaaaa attgggacca ctctaatatg caatatatca aataaggagg taatcgatat
     4741 atctaaaaaa gaaaataaga ccagatccac aatggcaatg agatactcat caaaagaaat
     4801 tgatggtggc attgttgtga taggaaatgc cccaaccgct ttatatgagg taattaaaat
     4861 gataaatgaa aatatagtaa agcccttgct tgtgattggg atacctgtag gctttgtttc
     4921 agcagctgaa tcaaaatctg agttatcaaa gacgaatgtg gactttataa caaatattgg
     4981 aagaaagggc ggaagttctg cagcttcatc aataatcaat gccttaatgc tcatgtatat
     5041 tagtaacttg aattgatgaa tatgaacact aaagcagcac acactgctga acatgcattc
     5101 ataggatcgc tgcaaaaaat attaaacaag actttgagtg tgagaaaagt ggaacataag
     5161 gattcataca atattgcgtt tataagagca tcagaaatag aattggattt tgaaaagata
     5221 gcttctgctg agaaggaggt taaccaacta atattggagg gaagaaaaat actacatcac
     5281 tcattttcct cgctaaatga agccaagaag gtatttccta atttgagagc caatgaaact
     5341 aggttagaaa atgctgatac aatcacagtt gttgaaatag aaaaccacga tctctctgcg
     5401 tgttcaatgg atcatgttaa tagtttgtcc gagtgtaaat tccttttagt aactaatatg
     5461 tcaatgaatg aatctgatta tgaaataaga tttatggttg gcaaaaatgc tatggatgaa
     5521 gcaatcagaa taactgaaaa aattaataat attagtaatc aagtaggagc aaattataat
     5581 acagtagagg cgactattaa gaagctatac tatgaaagag aacaatatta caacaggtta
     5641 aaaaaattga caaataaaac actggctgat attcctgatc agaattttga taaacagaat
     5701 attaacgtaa taacagcaat tctggacgat atggattggc gaatcattca aaattttgcg
     5761 ggagaaaaga tactagaaga gagaacagtc gtcattttag ttaatatagt tgacaatgat
     5821 atggcaaacc tcgtatttgc aaggagtaat gatgttaatt tagattgcgt taaaatcttt
     5881 gaggacctca gaaatgatga gaacataggg agtggtggtg gtaaggcaaa tttcgttaac
     5941 gctaaaatag taagatcaag atcaaacaaa gtcatacaag cactaatcaa taaatcatta
     6001 gagtccatat ctccataatt gaattagcac tcaaatttag cattcataaa aatttctaga
     6061 acaattcgtt gaatcaggat gtgcaaactg tagacaaaca atcataatta ttctgctctg
     6121 cttagttaat tcagcctaaa ttataatttg gattttttgt tttactagtt ttaatactat
     6181 tccaactcgg acaactaatt ttcaaaataa ttcaataacg aatcctgtcc agatatatct
     6241 ttaagatcag aaaccacaat acccatcctc ctgatattgt caagagatat tgaattattg
     6301 ctaatcatct catgtatgat tgatagtgaa ttcttatgca attcgtcaaa ggatgctgta
     6361 tagagtttga ggcttttcga aaatgaaaca tgttgaaggt tttctaaaat tagaattaga
     6421 gtaagaaccc tgaatgcctg tcgcttattt tctaaatttt catatacgga tttacaaaga
     6481 ttattagctg tcaatttgat ctgctcaaaa tttgctatat ctttttttag ggtaactatc
     6541 ttgccaattt gttttgaagt tccacgaact tttatctgcg aataatcgat tccgtttgat
     6601 gcatttacca gaaaagttgc tatcttatag cccaaggaat ctcttaattc aaaaatactt
     6661 tttttagata tatccgaaat tgattctatc cccaatgatt ccaacttctt ggatgttttt
     6721 ggacctactc cagggatatc ctcaatttta cgatttgaga taaatctctt agcatcttct
     6781 tgactaacaa ctgttattcc attaggctta ttgatacctg atgctatttt tgctattagt
     6841 ttattgggtc ccactccaat tgaacatgtc aatttaatct ggtccttgat atttttttgt
     6901 aatgactctg caaagatcct tgcatcatca aaatctgaat ttgtgatctt tgtaaaatcc
     6961 atataacatt catctacact gacttgttca aacagttctc cgtaattttg aattatcttc
     7021 attgcatttc tggaaatttc gtggtagtat ggcatatcag taggaagaaa tattgcttct
     7081 acatctttca attttgactt tgccaatcga attggcattg cggccttaac accatatttt
     7141 cgggcttcat aattacaagt actgaccaca ccggaatcct cttctcgtcc tgaatagacg
     7201 caaacaacac tcggaatatt tcttaattct ggtcttctta tttcttcgca ctgtgcgaag
     7261 aaataatcga aatcaatatg aaatattatt ttctttccaa tgtcatttaa agaaatattc
     7321 tcgttcaata gtacttgatt aagtgattct gaagaataaa aaaattattc catctaggct
     7381 agtgattcta tgaaaataaa aacaagaagt agatatttca atggcagcaa tatgtttcat
     7441 acatattatg gtattttctt atagtcaatg aagttatttt cttgttgttg atctcagtaa
     7501 ttttttcgac attccgtata tataaaagat taccaataag ttttgaattc agttttgata
     7561 caatcgttaa atcagaataa aaaatatgtt ctactctcgt caattttaat tatgatgctc
     7621 atcgcttctc ttgaaagctc tatactgtta actgctaacg cacaatccga tgaaaaaagt
     7681 gaaaaatcag cagattccga aaactccgat gaaacgaccg aaaaatcagc agattccgaa
     7741 aactccgatg ctgatagtag taacaaaacg gagattaatg ttccagttgc caagatggtc
     7801 tatcaaaaca agtcctatga aatgtcccca ttcgtagtta tggataatga aaacttagaa
     7861 aaaatcaatt tccctcactt accagatgat tttgaacctg aagtcacgat atccccagaa
     7921 gatcctattt catttagttt tctaactaaa cctcgtgaaa ttaatgcatt ctttgttgat
     7981 tacgacgcag atacaacaga gatgactccg cttcatagag ttggaaaaac tcaatttagt
     8041 tttggagatg tgtacggtcc aaatacttta gaactcagag tgatctatcc tgacggaaaa
     8101 tatgttacct atacatgctt gatagaagtt gataaacccg aagtacaaga agtagccttg
     8161 gattcgagta atattagtac catgagtact gatgataata atattatgag tacagatatg
     8221 ctaaatagta ataataat
//
LOCUS       DASUMD010000189         2699 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1059122, whole genome shotgun sequence.
ACCESSION   DASUMD010000189 DASUMD010000000
VERSION     DASUMD010000189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2699)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2699)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2699
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1059122"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(603..1235)
                     /locus_tag="VFX26_05180"
     CDS             complement(603..1235)
                     /locus_tag="VFX26_05180"
                     /inference="COORDINATES: protein motif:HMM:NF014625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIG-L family deacetylase"
                     /protein_id="HEX5573903.1"
                     /translation="MESKSILVFGAHPDDLEIGMGGTIAKLSAMGYEVQPIIATLPNF
                     VKSDSKEGRKTESMLSAKVMGCKSPVFLDLPPDEMVFGRKMVTLIDSLVTKYKPDSIF
                     TQWYGDSHQDHQILTKSVISACRDQNNIFMYETTIPGGITENSFRPQLYVNITETIET
                     KKNALECFESQSVRCGEIWIPAILGRCSYRGYQINSKYAEAFEVIKVTKW"
     gene            complement(1263..2198)
                     /locus_tag="VFX26_05185"
     CDS             complement(1263..2198)
                     /locus_tag="VFX26_05185"
                     /inference="COORDINATES: protein motif:HMM:NF015411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEX5573904.1"
                     /translation="MHTELGSQIKKVLVIGLGQLGLPVAKYVKDRGYETFGYDINQRR
                     VEAAEKNYGIKSIKRFDDIDVFILCVSTHDPNDEYTPFIDGLFSVAQKISRQAKNGSL
                     VSIESTVPKGTSKKIFEMLNHRLHVAHAPHRWYSLEEDVHGVNQVRVIGGVSDCCLKV
                     GLQFYDSGNEALEFNDNIANNNNENSRRNGLGIPMHPVTEIEIAELSKIIENADRYMQ
                     IAFSEDLYLYCQANNINFGELRDALNTKWNVKILEPRDGVGGHCLPKDTKMFLQSSKS
                     IKSKILMAALEVDQDYRRFREMRGYRLVPPAINSS"
     gene            2418..>2699
                     /locus_tag="VFX26_05190"
     CDS             2418..>2699
                     /locus_tag="VFX26_05190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase"
                     /protein_id="HEX5573905.1"
                     /translation="MIRIGLIGKTNTGKTTFFNSATLGNEEIANYPFTTKKPIHGNAH
                     VITLCVHKEFGVEDNPRNSLCKDGWRFIPVELIDLPGLIKGAWEGKGLGN"
BASE COUNT          793 a          515 c          444 g          947 t
ORIGIN      
        1 aatgtccttt aatataaggg tcaattcggc agattgagtg aaatttcgtc tttcaaatcc
       61 atctcgggca ttttttatca taccttttaa ttgattatcg tcaagcataa ttgaaaattt
      121 tagatttcaa gcctcttata aacgtgagtt acgttgatac gcatactggt attactgaaa
      181 ccgctaatag ggttcgacct agcagcctag aatattctct gttatactac tgttgtcaac
      241 ttgacaatct attgatattg aatattagca cgggcccgga gggcttcgat ccctcgactt
      301 ccggctctct tcgttaagac ttagaaggca ggcgctctat ccaagctgag ctacgagccc
      361 atttgttttg cttaatacag caaatccttt gcaaaaagga aataaaatat tcacttataa
      421 actgttcaaa acttctagcg ttttctttat taagacatga aagggagctt ttacgtcaat
      481 ccgatttgta ccataatcat tttttttggc gattcggaaa tgccttcttt ctctcaaaat
      541 aacttagtta tgatattttc caaaatcatt ctaaaataca tccactagat ggttctatct
      601 atttaccatt ttgtaacttt tatgacttca aaggcttcag cgtattttga attaatttga
      661 taccctctat aggaacatct gccaagaatt gccgggatcc atatttctcc acaacgaaca
      721 gactgagatt cgaaacactc cagagcgttt ttctttgttt ctatagtttc agtaatattt
      781 acatacaatt gtggtctaaa tgaattttca gtaattcctc caggtatcgt agtttcatac
      841 ataaatatgt tattttgatc tctgcaggca gaaattacac tttttgttaa aatttgatga
      901 tcctgatggg aatctccata ccactgagta aaaattgaat caggtttgta tttagttacc
      961 aatgaatcta tcaatgtaac catttttctt ccaaatacca tctcatctgg tggcaagtca
     1021 agaaacacag gagatttgca acccattact ttagctgata acatagactc tgtttttcta
     1081 ccttccttgc tatcagattt tacaaaattt ggtaacgtag ctattatcgg ctgaacctca
     1141 taacccatag ctgagagttt agctatagtg ccacccatgc caatttctag gtcgtctgga
     1201 tgggctccga atactagaat tgatttagat tccatacaac cagagttaga taattagcct
     1261 atttatgaac tgttaatggc tggtggaact aatctgtaac ctctcatctc tctaaatctt
     1321 cgataatcct ggtcaacttc cagtgctgcc atcaatatct tgctctttat tgattttgat
     1381 gattgcaaga acatttttgt gtctttgggc aaacaatgtc ctcctacacc atctcgaggc
     1441 tcaagtattt tcacattcca tttggtattc aaggcgtccc ttaattctcc gaagttaata
     1501 ttattcgctt gacaataaag gtagagatct tcagagaatg ctatttgcat atatctgtca
     1561 gcattttcaa ttattttact caattctgca atttctattt cagttacagg gtgcattggt
     1621 ataccaagac catttcttct ggaattttcg ttgttattat tagcaatgtt atcattgaat
     1681 tctagagctt cgttaccact atcgtaaaat tgtagtccta cttttagaca gcaatcactt
     1741 actcccccta tcactctaac ctgattcacg ccatgtacat cctcttcaag cgaataccat
     1801 ctatgaggag catgagccac atgaagtctg tggtttagca tttcaaatat tttctttgaa
     1861 gttcctttgg gtactgtact ttctatggaa acaagcgaac catttttggc ttgtcttgat
     1921 attttttgag caactgagaa taagccatct ataaaaggtg tatattcatc attgggatcg
     1981 tgggtcgata cacacaatat aaaaacatcg atgtcatcaa accgttttat gctttttatt
     2041 ccgtaatttt tttctgcagc ttctactctt cgctggttta tatcatatcc aaatgtttca
     2101 tatcctctat ctttcacata ctttgcaaca ggcaagccta gttgcccaag accgataact
     2161 aaaacttttt ttatttgaga tcctaattct gtgtgcattt tttgctgata ttaaagattc
     2221 ataatataat tattaaagcc ttgagatgga ataaaacgta agttaatcac taaagaaatt
     2281 tctatttagt tcgtatagaa ctttatgtag aaaattggag tctctcatct atcctgggtt
     2341 tgctgtttta actggaattc tctttttggt taaacatact tgctagatat aaataatcta
     2401 gcaaaaataa tagatgtgtg ataagaattg gtttgatagg taaaacaaac actggcaaaa
     2461 ctactttctt taattctgct accttaggca atgaagaaat tgcaaattac ccgtttacaa
     2521 caaaaaagcc aattcatgga aatgctcatg taattaccct gtgtgtacac aaagaatttg
     2581 gagtggaaga caaccctcgg aattcattat gtaaggatgg ctggagattt attcctgtag
     2641 agttgataga cctccctggt ctcataaaag gtgcgtggga aggtaagggt cttggtaat
//
LOCUS       DASUMD010000190         6418 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_949050, whole genome shotgun sequence.
ACCESSION   DASUMD010000190 DASUMD010000000
VERSION     DASUMD010000190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6418)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6418)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6418
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_949050"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..240
                     /locus_tag="VFX26_05195"
     CDS             <1..240
                     /locus_tag="VFX26_05195"
                     /inference="COORDINATES: protein motif:HMM:NF025374.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573906.1"
                     /translation="AHNHNYERIKLPDKHTLFIQAGTGGESHYDIKGNRSDGGIEFQD
                     DNDYGFVKLTINSNTLSGQFISHGGKILDSFSMVK"
     gene            420..1070
                     /gene="serB"
                     /locus_tag="VFX26_05200"
     CDS             420..1070
                     /gene="serB"
                     /locus_tag="VFX26_05200"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0036424 - L-phosphoserine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HEX5573907.1"
                     /translation="MLIIFDVEGVLLNAEYLPVLAQKLGPAKEKEIWDITKQGIRGEI
                     DWEEGLKMRVNSLRGTLFEDAKYIADNLQIMPGARKLCYSLKKAGWKMIAISGGFTII
                     TDKLKDELCLDKIFSNELIFKDGKLDGVKINVTSDKSLRVKAIIKEWGIKKEDIVVVV
                     DGANDLKLFDIAGYTVGFCPVDIVKQRADATIEIRDLSILLSLLEKKFGKTIETQL"
     gene            1101..1871
                     /gene="cofE"
                     /locus_tag="VFX26_05205"
     CDS             1101..1871
                     /gene="cofE"
                     /locus_tag="VFX26_05205"
                     /EC_number="6.3.2.31"
                     /inference="COORDINATES: protein motif:HMM:TIGR01916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043773 - coenzyme F420-0 gamma-glutamyl
                     ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="coenzyme F420-0:L-glutamate ligase"
                     /protein_id="HEX5573908.1"
                     /translation="MGEFSNTQIIPILIHDDIGPGDDIAGLITKSISEKNESFKENDV
                     VVITHKIISKAEGKIIDLSKIVPSEESNKISSATGKDPSLIELIISQSNEIIKIERDI
                     IITETKHGFVCANAGIDASNVGNLSNHVVLLPDNPDESARKIRNDIKSRTNMNVSVII
                     SDTFGRPFRKGQVNIAIGIAGIDPIKSYIGKTDMYGNILRVTEIAIADEIASAAELVM
                     GKSSRIPVAIVRGCDYISGDGDSSISKITRSKKDDLFR"
     gene            1989..2249
                     /locus_tag="VFX26_05210"
     CDS             1989..2249
                     /locus_tag="VFX26_05210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HEX5573909.1"
                     /translation="MNMTAENGATESFAKVIDVRGLYCPEPVFRTKIEIEKLGIGDKL
                     KIIADDPESEEDITRWADKSGHNLLSIEKKDNELEFVIKKTK"
     gene            2255..3247
                     /locus_tag="VFX26_05215"
     CDS             2255..3247
                     /locus_tag="VFX26_05215"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase family protein"
                     /protein_id="HEX5573910.1"
                     /translation="MTSIIGPEILQRIGNTPLYELSSYSNENIKFYAKLEWYNPFGSV
                     KDRAAYWMVKDAEKKGLLVKNKSIIIEPTSGNTGIALTGIASSMGYKVEIVIPEKVSE
                     ETKKILRNLGASLHETSDDLCPRVGAGTDQSIALATAIAKPRSDIYYMPNQYENESNF
                     LAHYESTGPEIWEQTNGKVTHFFTGCGTGGTITGTGTFLKEKNKNMKVVAIQAQQNHL
                     LQGLRNFEESSMPNLFKRRETIVDQWMTATNQESFDAVKDLLKKEGLFVGPSSGSVMS
                     SMLKLSKEIDKGVIVGIFADDGRKFKSLYKEQNVLEESDYVSALKKLPELYIKP"
     gene            complement(3249..4223)
                     /gene="trxB"
                     /locus_tag="VFX26_05220"
     CDS             complement(3249..4223)
                     /gene="trxB"
                     /locus_tag="VFX26_05220"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004791 - thioredoxin-disulfide reductase
                     (NADP) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HEX5573911.1"
                     /translation="MSKNANYDSHDTTEVKNLYDVIIIGSGPAGFTAGIYTSRAKLKT
                     LIITGSLPGGQLMTTSEVENYPGFPNGIFGPELMMNMRQQAERFGTTIVDDEVLKVDF
                     KNPPFLTSTHSESYEGRAILLCTGASPRKLGIDGEQEFGGRGVSYCATCDGPFFKGEE
                     IAVIGGGDTAIEEATFLTKFGKSVKIIHRREFLRASKILQEKAFENSKIQFIWNHVVT
                     KISGNKKIESIDIKDLTTGNSQNLTVGGLFVAIGHEPNTSIFKDQLELDDKGYVVLKE
                     NTRTSVEGVFAAGDVHDYRYRQAVTAAGFGCMAALDVEKWLSEKKFHK"
     gene            complement(4362..5123)
                     /locus_tag="VFX26_05225"
     CDS             complement(4362..5123)
                     /locus_tag="VFX26_05225"
                     /inference="COORDINATES: protein motif:HMM:NF042804.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6775 family putative metallopeptidase"
                     /protein_id="HEX5573912.1"
                     /translation="MKLSYVHLYSSLLSTSYLAKEVSTYLHEFIPFIDVDVRSFTNYF
                     RKNMIEEDIEDNMMIQLSHEVNANTSLGELQNSSDDIRQKMMIIDGFYLQRIYSRIID
                     KNEMQLDHLHLIFEDNLVCTYDENDDRYHARPIICGSPSIISISSIIEGPAKPKGYYF
                     KQMLKDLLSISSKEIEKEFADNFVSNDDPRLIHVATGYAIQAIFFFLTNGNPFCSQYP
                     CRLFNSHWQEELIYTQVIKPVLCKEHLRILAEAGE"
     gene            complement(5155..5958)
                     /locus_tag="VFX26_05230"
     CDS             complement(5155..5958)
                     /locus_tag="VFX26_05230"
                     /EC_number="2.4.2.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfide-dependent adenosine diphosphate thiazole
                     synthase"
                     /protein_id="HEX5573913.1"
                     /translation="MEKIFTETSEKEITRTIAQMFNETLIEYSDCDVIIIGAGPAGLM
                     AGRELCKNDVKTLIIEQNNYIGGGYWVGGYMMNPVTVRYPANKIWDELGVPYRKISDS
                     LYATWGPHACSKLIASACDSGVRFLQLTKFDDLVLKNEKVSGVVVNWMPVSALPRNIT
                     CVDPVALESKIVIDASGHDSVAVKRMMDRGYVKWKGMEPMSVTGEDAVVEYTGEVYPG
                     LIAAGMSATETHGLPRMGPTFGSMLLSGRKAAQVAISKLKKIANPDIKI"
     gene            6062..6367
                     /locus_tag="VFX26_05235"
     CDS             6062..6367
                     /locus_tag="VFX26_05235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEX5573914.1"
                     /translation="MSDPSARRLLWYLFAGSKGGENRVKIINLLQDTPLNINRMAETL
                     NLDYKAIQHHVNVLEKNNLVSHIGEKYGIMYFVSNYLESNMDTFREILKKIDKSKTN"
BASE COUNT         2113 a         1154 c         1167 g         1984 t
ORIGIN      
        1 gcacataatc ataattatga acgcataaag ctaccggaca aacatacatt atttattcaa
       61 gctggaacag ggggggaatc gcattatgac ataaaaggaa atagaagtga cgggggcata
      121 gaattccaag atgataatga ttacggcttt gtcaaattaa ctatcaatag taatacactc
      181 tcagggcagt ttatttctca tggtggcaag atattagata gttttagcat ggttaagtag
      241 tcacaagagt tcatcatttt ccaacttaag acaatttaag aactcatttg aacctaatcc
      301 caattagtaa cgaatttttt caaattatgc gagatgagat cgtgtatcag gatcccaagt
      361 tgttaaagct taaataaact taatatattg tgatgtaact ctctcgatta acagttaaaa
      421 tgctgataat ctttgatgta gaaggtgttc ttctcaatgc agagtacctg ccagttcttg
      481 ctcaaaaact tggcccagcg aaagagaaag agatctggga tatcacaaaa cagggaataa
      541 ggggagaaat cgattgggaa gagggactca agatgcgagt caactcacta agaggaactt
      601 tatttgaaga tgccaaatac attgctgata atttacaaat aatgccaggt gcaagaaagc
      661 tctgttattc gcttaagaaa gcgggatgga aaatgattgc aatctcaggc ggttttacaa
      721 taatcacaga taaactcaaa gatgagttgt gtttggataa aatattttca aatgagttaa
      781 ttttcaaaga tgggaagctc gacggtgtaa aaattaatgt tacctcagat aaatcactca
      841 gagtaaaagc tatcatcaaa gaatggggca taaaaaagga agatattgta gtagtggtcg
      901 atggagcaaa tgacttgaaa ttatttgata tagccggata tactgtcggt ttttgtccag
      961 ttgacatcgt taaacaaagg gcggatgcaa ccattgaaat cagagacctt tcaatcctgt
     1021 taagtctatt ggaaaagaaa tttggtaaga cgatagagac acagttgtga aatcatttgt
     1081 ccttagtttg attgttcaat atgggtgaat tttctaacac acaaatcatt cctatcctga
     1141 tccatgacga catagggccg ggggatgata ttgctggtct tatcacaaag tcaattagcg
     1201 aaaagaatga gtcctttaaa gagaacgatg tggttgttat aacacacaaa atcatatcga
     1261 aggcagaagg taaaattatt gatttatcaa aaatagttcc ttctgaagaa tctaataaaa
     1321 tatcttcagc tactggcaag gaccctagtt tgatagaact tattatttca caatccaatg
     1381 aaattatcaa aattgagcgg gacattatta tcactgaaac caaacatgga tttgtttgcg
     1441 ccaacgcggg gattgacgct agtaatgtag gaaatttatc caatcatgtt gtattattac
     1501 ctgataatcc agatgaatca gccagaaaga ttagaaatga tattaaatct aggaccaaca
     1561 tgaatgtaag cgtaattatt tccgatacct ttggtagacc attcaggaag ggtcaagtaa
     1621 atatagcaat tgggatagca ggcatagatc caatcaagag ttatatcggg aagactgaca
     1681 tgtatgggaa tattctaagg gttaccgaaa tagcaatcgc tgacgaaata gcctcagctg
     1741 ctgaacttgt catgggaaaa tcttcgcgta tacctgtggc aatagtgcgt ggctgcgatt
     1801 acatatctgg cgatggcgat tcttcaatat cgaagattac cagatcaaaa aaggacgatt
     1861 tattcaggta acctgaagat aaaattcctc aaagctagat aaatttattc gagtttacaa
     1921 gcaaaataaa tctgcaatga ttctctaaac atttaatata aacaggacct tgattaatag
     1981 tgttaggaat gaatatgacg gctgaaaatg gagctacaga atcatttgct aaggttatcg
     2041 atgttagggg actatattgt ccagagccag tttttaggac taaaattgaa atagaaaaat
     2101 taggcattgg tgacaagctc aagattatcg ctgacgaccc tgaatcagag gaagatatta
     2161 caagatgggc agataaaagt ggtcataatt tgttatctat agaaaaaaaa gataatgaat
     2221 tagaatttgt aataaagaaa acaaagtgaa ctaaatgacc tctataattg gacccgaaat
     2281 attacaacga ataggtaata ctccactgta cgaactttct tcatattcaa atgaaaatat
     2341 taaattttat gcaaagttgg aatggtacaa tccatttggt tcagtgaagg accgagcagc
     2401 atattggatg gttaaggacg ctgaaaagaa aggtttactt gtaaagaaca agagcataat
     2461 tatcgaacct acttctggaa atactggaat cgcattaact ggtattgctt cttcaatggg
     2521 ctacaaggtt gagatcgtta ttccggagaa agttagtgag gaaaccaaaa agattctaag
     2581 gaaccttgga gcatcacttc atgaaacttc agacgatctt tgcccacgtg ttggagcagg
     2641 gaccgatcaa agtattgctc ttgctacagc cattgcaaaa cctagatctg acatttatta
     2701 catgccaaat caatatgaaa acgaatctaa ttttcttgct cactatgaaa gtactggtcc
     2761 tgaaatttgg gaacaaacaa atggaaaagt aacgcatttc tttacgggtt gtggaactgg
     2821 aggcacgatt acaggaacag ggacttttct caaggagaag aacaagaata tgaaggttgt
     2881 tgctatccaa gcccaacaga accatttact tcagggtttg aggaactttg aagaatcatc
     2941 gatgccaaac ctctttaaac gtagagagac tatagtggac cagtggatga cagcaacaaa
     3001 tcaagaatca tttgacgccg ttaaggacct tctcaaaaaa gaaggtttgt tcgtagggcc
     3061 atcttcaggt tctgtaatgt cctcaatgtt aaagctttca aaggaaatag ataaaggagt
     3121 tattgtaggt atttttgccg atgacggtag aaaattcaaa agtctctaca aagaacaaaa
     3181 tgttcttgaa gaaagtgatt atgtttctgc attgaagaaa ttaccagagc tttacattaa
     3241 gccctagttt atttgtgaaa ttttttctca cttaaccatt tttctacatc tagtgcggcc
     3301 atgcatccaa atcctgcagc agtgacagct tgtctataac gataatcatg aacatctcca
     3361 gcggcaaaaa ctccttccac gctagttcta gtattttctt tgagaacaac ataaccctta
     3421 tcatccaact ctaactgatc tttgaaaatc gaagtatttg gttcatgacc aattgctaca
     3481 aaaagtcctc ctaccgtcaa attctggcta ttacctgttg ttaagtcctt tatatcaata
     3541 ctctctattt tcttattgcc actgattttt gtcacgacgt ggttccatat gaattgaatt
     3601 tttgagtttt caaatgcctt ttcttgtagt attttactgg cccgcagaaa ctctcttctg
     3661 tgaataatct taactgattt accaaactta gtaaggaaag ttgcctcctc aattgcagta
     3721 tcacctcctc caattactgc aatctcctct cctttgaaga atggtccatc acaagtagca
     3781 caatatgaaa cacctcttcc accaaactct tgttccccgt caatacccaa ttttctcggg
     3841 gatgctcctg tacagagtaa tattgctctg ccctcataac tttcagaatg cgttgatgtg
     3901 aggaatgggg ggtttttgaa atctaccttt aatacttcat catcaactat tgtggttcca
     3961 aatcgttcgg cttgttgtct catgttcatc ataagctctg gtccaaaaat tccattggga
     4021 aaacccggat agttttcaac ttcacttgta gtcatgagct ggccacccgg aagtgaaccg
     4081 gtaattatta gggttttgag ctttgcacgt gaggtgtaaa ttcctgcagt aaatcctgct
     4141 ggtcctgaac caataattat cacatcataa aggttcttta cttctgtagt gtcatgggaa
     4201 tcataatttg cattttttga catgtgtgat taagtggatg aagatttaac catttaataa
     4261 tttgttcgga attaagcagt gcaaaaataa tcacttacgt tttgaaaata aataccagat
     4321 cgctaaaaat aataattcga atatcctaat actatgataa attattcgcc agcttcagcc
     4381 aatattcgga gatgttcttt acacagtact ggctttatta cttgtgtata gattaattct
     4441 tcttgccaat gtgaattgaa taatctgcag ggatattgtg agcagaaagg gttaccattg
     4501 gtaagaaaaa aaaagattgc ttgaatagca taacctgtcg ccacatgtat tagccgaggg
     4561 tcgtcattgc taacaaaatt atcagcaaat tccttctcta tttctttact actaatagag
     4621 agtaaatctt tcagcatttg cttgaaataa tatccttttg gtttggcggg accttcaata
     4681 atactagaaa tggatattat gcttggagat ccacaaatta ttggtctggc atgatatctg
     4741 tcgtcatttt cgtcataggt acacaccaaa ttatcttcaa aaataagatg caaatggtct
     4801 aattgcattt cattcttatc aatgattcta gagtagattc tttgaagata gaaaccatca
     4861 ataatcatca ttttttgacg aatatcatcc gatgaatttt gcagttcccc aagactagta
     4921 ttagcattaa cttcatgcga taattgaatc atcatgttat cttcaatatc ctcttcgatc
     4981 atattcttcc tgaaataatt ggtgaacgac ctaacatcca catcaataaa tggaatgaat
     5041 tcatgcaaat aagttgaaac ttcttttgca agataagaag tcgacaacaa agaggagtag
     5101 agatgtacat atgataattt catatgtata tcattagttc tacttctgcc cttactaaat
     5161 ttttatgtcc ggatttgcaa ttttctttaa tttactgata gcaacttgtg ctgctttcct
     5221 acctgataac aacatcgatc caaatgtagg acccattctg ggcaacccat gtgtctctgt
     5281 tgctgacatt ccagcggcaa ttaatccagg ataaacttca cccgtgtatt ctaccaccgc
     5341 atcttctccc gtaaccgaca ttggttccat tcccttccat ttcacatatc ctctatccat
     5401 cattcttttt accgccacag agtcatgacc tgatgcatcg attactattt ttgattcaag
     5461 agcgacggga tcgacacatg ttatgtttcg tggtaatgca gaaacaggca tccaatttac
     5521 tacaactcca cttacttttt catttttcag aactagatca tcaaatttgg taagctgaag
     5581 gaatcttact cccgagtcac acgcagatgc aattagcttt gagcatgcat gaggtcccca
     5641 tgtggcatac aatgaatctg aaatttttct gtatggtacc ccaagttcat cccaaatctt
     5701 atttgctgga tatctaactg ttacaggatt catcatatat cctcctaccc aatatcctcc
     5761 accaatgtag ttattctgct caattatgag ggttttaaca tcgtttttac ataattctct
     5821 tccagccatc aaacctgctg gtccagcacc aatgataatt acatcacaat cactatattc
     5881 aatcaaagtt tcattgaaca tttgtgcaat ggttcgcgtt atctcttttt cacttgtctc
     5941 cgtgaaaatt ttttccataa ttcaattatc gctctcttgt attaatatta tatgtattgt
     6001 tagtttcgaa ttttgcccat aaattcaaat tttaattaaa agcgtattgt ggatacatca
     6061 aatgtcagac cctagtgccc gacgacttct ttggtattta ttcgcgggtt caaagggtgg
     6121 agaaaataga gtcaagataa taaacttact acaagatact ccgctcaaca taaatcgtat
     6181 ggcagaaacc ttaaatcttg attataaggc tattcagcat cacgttaatg tgttggaaaa
     6241 aaataatttg gtttcccata ttggcgaaaa atatggtata atgtattttg tttcaaatta
     6301 tctcgaatct aatatggata cttttagaga aattctaaag aaaatagaca agtcaaaaac
     6361 aaattagaat ttgaatacac tttcatacat caatttcgaa atgtaaacat gtaaaatc
//
LOCUS       DASUMD010000191         2169 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_287926, whole genome shotgun sequence.
ACCESSION   DASUMD010000191 DASUMD010000000
VERSION     DASUMD010000191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2169)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2169)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2169
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_287926"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..494)
                     /locus_tag="VFX26_05240"
     CDS             complement(<1..494)
                     /locus_tag="VFX26_05240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     GatCAB subunit B"
                     /protein_id="HEX5573915.1"
                     /translation="MSLVMIGLEIHAQITALNSKLFCSCRGNYRELGPNTNICEICCG
                     LPGSLPVINQKAIEYSAMTSLALGCKVPDKIMFYRKNYFYPDLPKNFQITQYNVYGYS
                     SIGVDGIYELDDAKQIRISRIQLEEDPGRIAYSEGSMNVRNSVLLDYNRAGVALIEIV
                     TEPD"
     gene            complement(491..1936)
                     /gene="gatA"
                     /locus_tag="VFX26_05245"
     CDS             complement(491..1936)
                     /gene="gatA"
                     /locus_tag="VFX26_05245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HEX5573916.1"
                     /translation="MSNLHDLLAYEVVGGINGGLFSAEEYVNSILKRIEDVESKLHSF
                     ITLDSEGALSAAKKIDRKIKEKEDTGELAGITVGIKDNISTKNIRTTCASKILEDYVP
                     SYDATVIKHLKKNGAIILGKLNLDEFGMGSTTEYSRYQPTHNPWNLDYVPGGSSGGSG
                     AAVAARECTVSLGSDTGGSIRCPASFCSVVGLKPTYGRVSRYGLISYANSLEQIGPIC
                     RSVRDLVMMVNIISGKDEMDNTSIPSSPITLNNKLGKLNVAIIKELITGSDHEVSRTI
                     YSASEKFKEIGCTCDEISIKNLHYALPSYYTLASAEASSNLARYDNIRYGFDLPVEEY
                     KWDTYFSKVRENFGEEVKRRILIGSYVLSSGYYSKYYLKARRLRSLLRLELLTLFKKY
                     DLLIGPTMPIPPFKFGEKIDDPIKMYLVDINTVIANLAGIPAISLPVGFSNGLPIGLQ
                     IMAAPFEEQKLIDASYDLENSINIQRKTNAI"
     gene            complement(1938..>2169)
                     /locus_tag="VFX26_05250"
     CDS             complement(1938..>2169)
                     /locus_tag="VFX26_05250"
                     /inference="COORDINATES: protein motif:HMM:NF014716.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573917.1"
                     /translation="KINLNENESRKFPKQLDKTIEYIDILEELASDDSVILDLQEMKI
                     EELRDDVVRMSDGKQISKNITEDGFLRGPKMK"
BASE COUNT          626 a          447 c          345 g          751 t
ORIGIN      
        1 aagtctggtt ctgtaactat ttcaattaaa gcaacaccgg ccctattgta atctagcaaa
       61 acagaattcc taacattcat gctaccttca gaatatgcta ttctaccggg gtcttcctcc
      121 aattgaattc tactaattct aatctgtttt gcatcatcca attcgtatat gccgtctact
      181 cctatgcttg aataaccata tacattatac tgggtaatct gaaagttttt tggcaagtca
      241 ggataaaaat aattcttgcg gtaaaacatg atcttgtctg gaactttaca ccccaaagcg
      301 agtgatgtca ttgctgaata ttctatcgcc ttttgattga taactggtaa tgaacctgga
      361 agtccgcagc atatttcaca aatgttagta ttgggtccaa gttctcgata gttgccacga
      421 catgaacaaa ataatttgct attgagagca gttatttgag catgaatctc taaaccaatc
      481 attaccaagc tcatatcgca tttgtcttcc tttggatatt gatagaattc tcaagatcat
      541 atgatgcatc gattagcttt tgttcttcaa atggcgctgc cataatttgc agtccgatgg
      601 gaagaccgtt actaaatcca acaggtagtg atattgcagg aatgcctgca agatttgcta
      661 tgacagtatt tatgtcaacc aagtacatct taattggatc atctattttt tcgccaaact
      721 taaacggagg tattggcatc gttggtccaa ttaaaagatc atattttttg aataaggtaa
      781 gcaattctaa tcttaatagt gagcgtagtc tccttgcctt gagataatat ttgctatagt
      841 atcctgaaga aagaacatac gatccaatta atattctcct ttttacctct tcgccaaagt
      901 tttctctaac cttactaaaa taagtatccc atttatactc ctctaccgga agatcaaacc
      961 catatcgaat attatcatat cttgcaagat tactacttgc ttcagcgctc gcaagagtat
     1021 agtaagaggg taatgcataa tgtaggtttt ttatcgaaat ttcatcacat gtgcatccga
     1081 tctctttgaa tttttctgat gcggaataaa ttgttctcga aacttcatga tcactgccag
     1141 taatcaactc ctttattatt gcgacattca atttacctaa cttattatta agagtgatag
     1201 gagaggacgg aatacttgta ttatccattt catcctttcc cgaaataatg tttaccatca
     1261 ttaccaagtc cctaaccgat ctgcatatag gaccgatttg ttctaggcta tttgcatagg
     1321 aaattagacc gtatctgctt accctgccat aagtaggctt aagtcccacg acggaacaga
     1381 agctagcagg acatcttatt gaacctccag tgtctgatcc aagagaaaca gtacactctc
     1441 tagcagcaac tgcggcaccg cttccacctg atgaacctcc gggaacataa tccagattcc
     1501 atggattatg agttggttga tatctactat attcagttgt tgaacccatc ccaaattcat
     1561 ccaggttcaa ttttcccaat attattgctc catttttctt caggtgcttt attacagtgg
     1621 cgtcatatga tggaacatag tcttccagta tttttgaggc gcatgtagtt ctgatatttt
     1681 ttgtggaaat gttatccttt attccaactg ttattcccgc taattcacct gtgtcttctt
     1741 tttctttaat tttcctgtct attttcttcg cagcagataa agctccctca gaatccagtg
     1801 tgatgaatga atgtaatttt gattccacat cttctattct tttaaggata gaattaacat
     1861 actcttctgc agaaaataat cctccattta tgcccccaac aacttcatag gctagtaggt
     1921 catgtaggtt tgacatccta tttcatcttt ggacctctta aaaaaccgtc ttctgtaatg
     1981 ttcttgctaa tttgttttcc gtcagacatt ctgactacat catctctaag ctcttcaatt
     2041 ttcatttcct gtaagtctaa aataacagaa tcatcagatg caagttcctc aagaatatca
     2101 atgtattcaa ttgtcttgtc taattgttta ggaaattttc gagattcatt ttcattaaga
     2161 ttaatttta
//
LOCUS       DASUMD010000192         4080 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_66647, whole genome shotgun sequence.
ACCESSION   DASUMD010000192 DASUMD010000000
VERSION     DASUMD010000192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4080)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4080)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4080
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_66647"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(374..1012)
                     /locus_tag="VFX26_05255"
     CDS             complement(374..1012)
                     /locus_tag="VFX26_05255"
                     /inference="COORDINATES: protein motif:HMM:NF015925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HEX5573918.1"
                     /translation="MAAAKDNTNPNTNNKNDDLNTDNKHANPVTVIVKRIAKNDKIKE
                     FEEWLSGISKEVSKQEGNMGIDIIRPTDKSKLEYVIIFRFNNYDSLTKWEKSTKRNEW
                     LQKGRKLVEADPDVQKLTGLEFWFTPYFKDESSPMIPLNPPPRYKMVIVTIPVISIML
                     MTLVPQIHILTEMLSVPFPVRLVIALTITVLLMTYVIMPLLTKLLKFWLFKT"
     gene            complement(1170..2843)
                     /locus_tag="VFX26_05260"
                     /pseudo
     CDS             complement(1170..2843)
                     /locus_tag="VFX26_05260"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
     gene            complement(3648..>4080)
                     /locus_tag="VFX26_05265"
     CDS             complement(3648..>4080)
                     /locus_tag="VFX26_05265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573919.1"
                     /translation="VIKKVYKRDNSCPTQSNSIQLKGKILGKGVIVLADFEPCELRDG
                     RATLNIPTNPNLKFVVLSLDKKGNEHDGMIATQQKIQSLGKDSGLYVVNFDDEMIGND
                     PITGKKKTIDDISGLAIYNTASKSLNFNSGNSLALTAVLKK"
BASE COUNT         1212 a          784 c          730 g         1354 t
ORIGIN      
        1 ctgattaact attgaaagta tcaaaactca gatgaaaatt catcaggtag tcatctttag
       61 tgatgccaat tttgtttctc aattaccaat ctatttatcc ggtctattag acaatgatgt
      121 aagttctttt ttaaaaatac atactttgat ccagatgatc gttccaccac ttattttctt
      181 gttttctata cctatttctt ttatacatgt ggatgtagct caatatttct ggttagccag
      241 tattctaata aatatcatca ttggacaaag atataagatt aaaaatctaa aatctttaat
      301 tatttaagat tttgataatt agcaacaaaa ttcttatcta tcactattca aaaaaagtat
      361 tacttttttg atttcaagtt ttgaataacc aaaattttaa taattttgtt aaaagaggca
      421 ttatcacata agtcattaga agaactgtta tcgtaagagc aataacaagt cttacaggaa
      481 atggtactga taacatttct gttaaaatat gtatttgagg aaccaaagtc attagcataa
      541 ttgatatcac aggaatagta acaattacca ttttgtaccg tggtggaggg tttaaaggaa
      601 tcatggggga agattcatct ttaaaatatg gagtaaacca aaactccaac cctgtaagtt
      661 tttgtacatc aggatcggct tctactagtt ttctgccctt ttgtaaccat tcatttcgtt
      721 ttgttgattt ctcccatttt gtaagactat cataattatt aaacctaaat attataacat
      781 attcaagttt agatttgtca gttggtctta ttatatcaat tcccatattg ccttcttgtt
      841 tagaaacttc cttagaaatt cctgaaagcc attcttcaaa ttctttaatt ttatcgtttt
      901 tagcaatacg tttaacaatt acagtaactg ggtttgcatg cttattgtca gtattgagat
      961 catcattctt attatttgta ttaggattag tattatcttt cgcagcagcc atcgtgttat
     1021 tttaaatcta attgaaaaat aaatagtctt tcgtgttcaa taatccttca aagaaaattg
     1081 tattattaat tatatgtgtt accagattcc agaatagaaa actaggttca tagtcattac
     1141 cttagtctaa gtcacattcg atctgcttcc tattcttgga gaactttatg aacgaaagag
     1201 atagcaatcg atccttcgcc taccgcggat gcaacccgct tgatatttcc tcctcgcacg
     1261 tcacccaccg cgaaaacatt gggcaaactg gtttcgagca agaatggttg acgggtaagt
     1321 ggccaccttg aaactcttag attttctggc gatagatcgg gaccagtctt tatgaagccc
     1381 ttagcgtcga gcgctacgca gccattaagc caacgagtgt tcggattggc acctgtcatg
     1441 acgaatacat gtctgatctt atgctgctca atctgtcctg tttgaccgtt cctccagtga
     1501 acggaatcaa ggtggtcgcc tccttctagg gccacgatct ccgtttgtga atggattatg
     1561 atcgtatgac tcttctatat cctgcgaatc aggtagcgtg acatgctctc agatagtcct
     1621 gtggacctga cgagcatgtg gacacgcttt gtagtttgtg ccagaaatac ggcagcctgg
     1681 ccggctgagt ttcctccgcc aatcacaatc acttcatctc ctttacacaa ttgcccttcc
     1741 aaaaaggttg caccataata tactcctgcg ccttcaaaac tagacaggtt ttctaatggt
     1801 agtcttcgat attgcgctcc cgtcgcaatc aagacagtac gtgccgaaat ttgagtccca
     1861 ctctcgactt ggatgacata cggtatgctg tcggagatga gtcctgtggc cttagccatg
     1921 agcatgtcag cgccgaactt ctgagcctgg aggtatgctc gagacgcgag ctcttggccc
     1981 gagatacctg tgggaaatcc taggtaattt tcgattcttg agcttgaacc tgcctgacca
     2041 ccaggcgaac tcgtttcaag caccaaaacg tcgagtcctt ctgaagctcc atatactgcg
     2101 gcagccagcc ccgatggacc ggcgccgatg acgacgagat cgcgtatctg gatttggtca
     2161 atagattcat tgaagcccag acagtctgcg atttgttggt taccgggatt ccggagtatt
     2221 acttgacctc gacagatcaa cactggtatt tcactgggtg aaatttggaa actatccaac
     2281 aggttttgta cgtcaggatc acgttctaga tctacgtatg aatatgggtg tccattgcgc
     2341 atcaaaaact ctttaatcct aagtgtactg gctgaatgta atgacccgat gagaacaaca
     2401 tctccaacac cagcagctat caactctact ctacgaagga tgaaagctcg catcaatatc
     2461 tctccgagtt cagcatcggt ctgcaccaaa gtcaacatgt gtttgtgatc cagttcgatc
     2521 accttaccgg gattagttgc acgcatctga actaaagacc ggcggccaga gagtgtgttg
     2581 acttcgcctg tgaattgacc agaatcatgg accgtgacaa gggtctcata ggacccgtag
     2641 ggtctcacaa tttcgagttc gcctgtgatt acaacaaaga acggtacgga tttgtctccc
     2701 tgctcgacga gcacttcgcc acgctcaacc ttacgtatat gtccatgcgc tgcaacacga
     2761 cgaatctgag ctggagttaa tttcggaaat attttctcaa tacgagcgct ggttagggga
     2821 agtcccttgc gtatattgct catagcggtc gtttccggta cggtgggttt tcgaaaatca
     2881 ttgttgggaa ctttggagca taattgaaag agtcatgttt taacattttg agcttattca
     2941 aagtagtcag tctaaaatct ctaaaagatg aataatgata ggcctttaac aatgactctg
     3001 gaccatccat aaaaacaaga tttttaaata tcattttttg tgatatggtt ctacattcta
     3061 atatgcttac tgtatgttaa attgtataga ttgcagaata tatggttcaa cactccatta
     3121 accggtccat ctattgaaga attacaacaa gcaattagag tctcgaagaa aaatagaata
     3181 aatcgataat ttaagatcaa tgagaccctt tttaccctcc ctattgggca gactcttttg
     3241 aaacttttga ggactcaaat aaaagtaata caattaaaac tttagaatag aatttatcag
     3301 atgctattaa atatccaaaa tttatttatt atgttaccga atccagttat aatgagaata
     3361 cgaagtcttt ttaacccgta ttgagatatg gttaaataaa ttgtttgttt gtctataatc
     3421 ttaatttttt gtaaattcaa agtgtggtta tttaggaagc catctcaaaa ttgtatttgg
     3481 atattttttt aaataataaa attaatatct taaccatatg gatactatca tacaaccttc
     3541 agataaacta gataatgata ttttgaatca gaaataaata attttgataa aaacttttta
     3601 gactcgcagc caaattgtat aattatttta gcttaaaaat taaaaaatta ttttttgaga
     3661 acagcagtta atgctaggct gtttcctgaa ttaaagttaa gagacttaga tgccgtatta
     3721 tatattgcta atccgctaat atcatctatt gtttttttct ttccagttat gggatcattt
     3781 ccaatcattt catcatcaaa atttacaaca tatagaccac tatctttgcc aaggctttga
     3841 attttttgtt gcgtggctat cattccatca tgttcatttc ctttcttatc taatgataaa
     3901 acaacgaatt taagattagg attagtagga atgtttaagg tggcacgtcc atctcttaat
     3961 tcacatggtt caaaatctgc taaaactatg actccttttc caagtatttt tccttttaat
     4021 tgtattgaat tggattgagt aggacatgaa ttatctctct tgtagacttt tttgattact
//
LOCUS       DASUMD010000193         3504 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_620469, whole genome shotgun sequence.
ACCESSION   DASUMD010000193 DASUMD010000000
VERSION     DASUMD010000193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3504
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_620469"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(370..834)
                     /locus_tag="VFX26_05270"
     CDS             complement(370..834)
                     /locus_tag="VFX26_05270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573920.1"
                     /translation="MESDDESANLVTNWMLESNFSSEEFEDYHQALSMFNNTLKDGTQ
                     VILYEIKKSPVDGSIVKKTPLLNSKKAKTKSRSFKRITYSQSGDKSDDHPKKKNKFKE
                     FKVRIFLLIIVFLTFIAIMFFMNSIAGESSNVTTVHQSILFRIDNPISLLHL"
     gene            complement(1354..1971)
                     /locus_tag="VFX26_05275"
     CDS             complement(1354..1971)
                     /locus_tag="VFX26_05275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573921.1"
                     /translation="MRVIFIASTISAIALIFAITCVPFVVVASNSVMVNVGGNGSSWS
                     SFTPQSVEIKAGETVTWRNPMAVSEPHTVTFLKDQSFYPPPAVPVPLTFNSTELKADP
                     DANIDPLIIDQNGTKSVIVDNARHYNPVSVDSSGHNPTYLPLNANYTLTGTEKFVSSG
                     WMWPEGLAPQGAPPIKTFSVTFENAGKYDYLCIIHPWMTGIVIVN"
     gene            complement(2196..2594)
                     /locus_tag="VFX26_05280"
     CDS             complement(2196..2594)
                     /locus_tag="VFX26_05280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573922.1"
                     /translation="MYTTKKLAVLSIALTLSLTMIVWSSTVAYVSAAKPTNPDLWGKE
                     ASELAQANKQEEKDDSPGSEMGEHTRDSDLNGDDPGRVGVGNIDEALEEALGQEVEDH
                     PSGVVDTLCGEDEPNNDPAPDCPDAIADDD"
     gene            2812..3336
                     /locus_tag="VFX26_05285"
     CDS             2812..3336
                     /locus_tag="VFX26_05285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573923.1"
                     /translation="MKNSVNSKKTLPLTAAFIAISAILIAGTNNVLAQNQLNEADFKI
                     KDFGIKDGKPWLTVEGKAGESKPQNASQIYGYAFVTDKGIFAVVSHGGAEDSPQVGND
                     SEWHTHGVTLDEKNCVTDLNNDGSAIVTDQVEIGNITATKVDKVMTALLGINNADASV
                     CVEKVFDSKNSTQG"
BASE COUNT         1138 a          614 c          625 g         1127 t
ORIGIN      
        1 tcgtcaccat cctaattttt ggatcaaggt tcattatatc agaatgggtt ttctgaaaat
       61 tcatatacat aatataatac taattcttat aaagttttaa attcaaactt taaatttggt
      121 tagtcaagtt actagttatc gcctacaaac atatgttcac ctgattacat acctgatatc
      181 aaattcatcc taaatcatct tttgaactga gatagataat gactctatta gatttgccaa
      241 gtgaatatat tgatatgtta tagtactttt cagattcata atttcccata gacttgaaca
      301 ttttaagatt taagcacaaa aaaatgccaa ttcacaataa tttttaatta ttacctaaga
      361 tgtcctatat taaagatgta ataaggaaat cggattatcg attctaaata atatagattg
      421 gtgtaccgtc gtaacgtttg acgattctcc tgcaatacta ttcataaaaa acattatagc
      481 aataaaggta aggaaaacaa tgataagaag aaaaatcctt accttaaact ccttgaattt
      541 atttttcttt ttcggatggt catcagactt atctccggat tggctataag tgattctctt
      601 aaatgatcgt gatttagttt tagctttttt agaatttagt aacggagttt tctttacaat
      661 tgatccatcc acgggactct tttttatttc atacaaaata acctgcgttc catcctttaa
      721 tgtgttatta aacatggata gagcttgatg atagtcttca aattcttcac tagaaaaatt
      781 agattctaac atccaatttg ttactaaatt tgctgattca tcatcgcttt ccaaatgctt
      841 tcgtagcgat acaacgtgta gataatataa aattcttgcc gtctatgttc tgacgcataa
      901 tcctaactat tagatgagat tagatagaaa gaaacccaag tttcataata acttatgtgg
      961 taaaagtaca gatttgaagc cttttttatg ttcgacttac tttatgagtt tagtgtggat
     1021 actaaatacg gtatcataac aagtgttaaa caacaatgat attgaattat ttctcaagat
     1081 taaattccca cctcacatga attatgaata gaatagatac tatgactgat ttaaagtagg
     1141 gtatatctta acacagtacc aatttccgga atatgttgga ttagtaacaa gctttatatc
     1201 acaatacatt gcaatattta caataaatat atcgaaaata tgtaaatttt attcgggttc
     1261 ggtgcttctc gtaactctgg aagttcaatg aatgaactca tgatgatgtg gatacaacta
     1321 acctattttt taaattgtat gcggattatt ttctcaatta acgattacaa ttccagtcat
     1381 ccagggatgt ataatacaca agtagtcata ttttccagca ttttcgaaag taacggagaa
     1441 agtcttaatt ggtggtgctc cctgcggtgc caatccttca ggccacatcc aaccggaact
     1501 aacaaatttt tcagtcccag tcaaggtata atttgcatta agaggaaggt atgttgggtt
     1561 atgtccagaa gaatctactg aaactggatt atagtgtcgg gcgttatcta ctatcacaga
     1621 ctttgttcca ttctgatcta ttatgagagg atcaatgttc gcatcggggt ctgcttttag
     1681 ttctgtagaa ttaaatgtaa gtggcacagg cacagcaggc ggtggataaa aactttgatc
     1741 ttttagaaag gttacagtat gtggttcaga aacggccata ggattacgcc atgttacggt
     1801 ctcccctgct ttgatttcaa cactctgagg ggtaaaagaa gaccatgaac taccatttcc
     1861 tcctacgttt accatgacag aattagatgc aacgacgaca aacggaacgc aagttatggc
     1921 aaagataagt gctattgctg agattgtaga ggctataaat attacacgca tagagccatt
     1981 ataaatttag gatctttata tttctgtctg tctctgctta aactctaatt ttaagagcct
     2041 ttagaattgc taaagctaat tgtcctatgt atcaccttct aatcatgaaa tcgagaattc
     2101 tttattaaag aatcttcaaa tatgctacca ataaagatat cgctctataa aaaagagaaa
     2161 gacatcaaaa aaaaggaagt ttagatttat gacattcaat cgtcatctgc gattgcgtca
     2221 ggacaatcag gtgcagggtc attgttcggt tcgtcttcgc cgcaaagggt atctactact
     2281 ccactaggat gatcttctac ctcttgccct agtgcttcct ctagcgcttc atcaatattc
     2341 cctacgccaa cacgtcctgg atcatctcca ttgaggtcac tatcacgagt gtgttctccc
     2401 atttcagaac ctggtgaatc atctttttcc tcttgcttgt ttgcttgagc gagttccgat
     2461 gcctcctttc cccataggtc aggattagtt ggcttggcgg cagacacata ggcgacagta
     2521 gacgaccaca caatcattgt cagcgataac gttagggcga tagacagaac tgcaagtttc
     2581 ttcgtagtgt acattttctt cttcgattcg tacgtaatgg ctgtatataa gtgtaacaaa
     2641 tatagagaat ctcttgtttt tttaaaattt ctaagttttc ttgaggtttt cggttagata
     2701 atttaataaa aaatcaccgt atattgtaat tatcagctcg tactgatcaa ctgataagtg
     2761 atcataggat aagtaaattt catatagtat agtaatatcg aagttttaca catgaagaat
     2821 tctgtaaact caaagaaaac gttgccttta acagcagcat tcatagctat cagcgctatt
     2881 ctaatagcag gaacaaacaa tgtactagct caaaaccaat tgaacgaagc ggactttaag
     2941 ataaaagatt tcggcatcaa ggatggaaaa ccttggttaa ctgtagaggg aaaagctgga
     3001 gaatctaaac cacaaaatgc aagtcaaata tacgggtatg cctttgtaac cgataagggt
     3061 atttttgctg tggtatctca tggaggagct gaggatagtc cacaagtggg gaacgatagt
     3121 gaatggcata cacacggagt aaccttggac gagaaaaatt gcgtaacaga tcttaataac
     3181 gatggaagcg ccatagtaac ggatcaagtt gaaattggca atatcacggc aacaaaagtc
     3241 gacaaagtaa tgacagcact attgggcatc aacaacgctg acgcatctgt ttgcgtagag
     3301 aaggtattcg attccaaaaa ttcgacacag ggatgacagc gctatagggt atcaacaacg
     3361 ctgacgctaa actgtgtgta gagaaagtgt ttgaccctaa accataattt ttttttgatt
     3421 tttatttaca tattagtaaa tctttattct taagggcaaa gtatgtaagg ccatcactca
     3481 gtaacatatt ctcatgttac tagt
//
LOCUS       DASUMD010000194         4778 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_953018, whole genome shotgun sequence.
ACCESSION   DASUMD010000194 DASUMD010000000
VERSION     DASUMD010000194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4778)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4778)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4778
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_953018"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..736)
                     /locus_tag="VFX26_05290"
     CDS             complement(<1..736)
                     /locus_tag="VFX26_05290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX5573924.1"
                     /translation="MTSSDDNDKLTPSNHDNNLVALEVRNLSKFWDSHAGRVIGIANI
                     SFNVKKGEFVSIVGPSGSGKSTLLNMLGALERPSSGQVFINGVDIYSMNDSQAAVMRN
                     KYIGFIFQSYNLINRTNVLKNVEFPAIISGMNRSERKMRAIKLLSFLGLKSKVQSKPF
                     NLSGGEQQRVAIARSLMNNPAIILADEPTGNLDTKTGGDVFGLLKLLSNKFKRTIIMV
                     THNHDLAANTDRSIHIKDGRIQKEVKN"
     gene            1051..1986
                     /locus_tag="VFX26_05295"
     CDS             1051..1986
                     /locus_tag="VFX26_05295"
                     /inference="COORDINATES: protein motif:HMM:NF024804.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AsnC family transcriptional regulator"
                     /protein_id="HEX5573925.1"
                     /translation="MQQPILDKIDLRIIQALAKDCRVSYRNIGSVVGLTTKSVRARVV
                     KMVSSGVIEKFFVYINPAVLGYGTECILKMRYNEITENIIDRLNLLGDLFLHVRQIGG
                     TSVFSLVVKTGAEDKIPLLIDSLKPAVMQSMFVSRPYVQKGPKELDFKIIKCLLPNPR
                     MHISEIASKLSISAKTVSRRLDMMKENNVVQFSVLVNPASTRGYIQFVIVISVKETLY
                     QYVLECIYRELSGNLLLQAPITSPDNLIVLIMFSQDIFTVDSILRKVESFDGVKTAEL
                     DILTGITLSQDWMVNEIERRLTKIEQINLRKLVKK"
     gene            2462..2989
                     /locus_tag="VFX26_05300"
     CDS             2462..2989
                     /locus_tag="VFX26_05300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573926.1"
                     /translation="MTDIRDKHYIDGNLKRNKKVIWGPIGVTAGNIFAVVLILSIYIQ
                     NSGAVTNLLMHDHVSLNVTIDGTPIIVPTHIGMNQTGIFADPLLYADNTLDKYGMVGM
                     SPLHTHDSSGIIHVESNKIRYYTLGEFLDIWKGLNTDGKNVIATVDGSPVSEFRGIVL
                     NNGSKIVLDITSKVS"
     gene            3066..4034
                     /locus_tag="VFX26_05305"
     CDS             3066..4034
                     /locus_tag="VFX26_05305"
                     /inference="COORDINATES: protein motif:HMM:NF028479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-bladed beta-propeller"
                     /protein_id="HEX5573927.1"
                     /translation="MFCNKPLLLFSVLILGIFSVSTYSMISPLAAQESNYSFLYKWGS
                     QGVSVGEFAQPLAIAIDANDDVYVTDTASETNNIQKFTKNGTFVTSWNLSGITGDPFT
                     NARGIGIDSLNSVYVTGGASPNTAVQKFTNNGTFVSSWGSTGSGDGEFVSPGWVTIDS
                     ADNVYVGDLGETSRIQKFDSNGTFITKWGGPGTSDGQFVNPSGLVVDSSDNIYVTDRG
                     NNRVQKFDSNGTFITKWGTSGAGEGQFKLPAGLGVDTSGNILVADAGNDRIQLFDSNG
                     TFITKWGTSGVGDGQFDQPTGIATDSSGNVYVVDRYNNRIQVFAGQ"
     gene            complement(4158..4610)
                     /locus_tag="VFX26_05310"
     CDS             complement(4158..4610)
                     /locus_tag="VFX26_05310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573928.1"
                     /translation="MVTIQKIVFRIRTADIEDAGTDGEVYVGFCGREFHIGTSYEDFE
                     RGAERTYSAGMSAIECEVNVNNPTLNNPKAFPPLDSEDISLYPVYLRFEPVGRYDHWC
                     LQYISVSAAGVKYEALEPEDETSIYTVLGYKSGKCLYLHPARNRGGPG"
BASE COUNT         1486 a          826 c          918 g         1548 t
ORIGIN      
        1 aattttttac ttctttttgg attcttccat ctttgatatg tatagatcta tcggtgtttg
       61 ctgctagatc atgattgtga gtcaccataa ttattgttct tttaaacttg tttgatagta
      121 gctttaataa gccaaaaaca tccccacctg ttttagtatc caaatttcct gttggctcgt
      181 ctgcaaggat tatggcagga ttattcatta gagatctggc tattgccacc ctttgttgct
      241 ccccaccgct caagttaaac ggttttgatt gtactttgga ttttaatcct aagaaactta
      301 gtaacttaat tgccctcatt tttctttcag atctattcat tccgcttatt atggctggaa
      361 attctacatt ttttagcaca tttgtcctat tgattagatt ataagattga aaaataaacc
      421 cgatatactt gtttctcatt accgccgctt gggaatcgtt catggaatag atatcgacgc
      481 cattgataaa tacctggccg ctgctaggcc tttctaatgc gcctaacata ttaagcaaag
      541 tactttttcc actacctgat ggaccaacta tcgacacgaa ttcgcctttt tttacattaa
      601 atgaaatgtt tgcaattcct attactctac ctgcgtgaga atcccagaat tttgagagat
      661 tcctaacttc tagtgcaacg agattattat catgattaga gggagtcaat ttatcattgt
      721 catctgagga ggtcattcaa tattgtggag ataatattgg aattattaaa gcaaataggc
      781 aataatgcgc cacatacggg acattataat attaaaactg tctaatatta ttcgtaagga
      841 tatatacaat agatgaataa cgactgaatg atttctacaa aattactctt ttgttagata
      901 ttaaagtatc tcatatgcta cggacagtgc ttgaaatgct caagacattt ttatggtcta
      961 ttttgtccga gatttatctc aggataattt cagacttaag aaatcagaca gcaacctttt
     1021 ataaatgact gtatttgata tccacatttc atgcaacaac ccatactaga caagattgat
     1081 ttaaggatca tccaagcttt ggccaaagat tgcagagtat cttacaggaa tataggttca
     1141 gtcgttggtc tgactacaaa gagtgttaga gcaagagttg tcaaaatggt ttctagtggt
     1201 gtaattgaaa aattttttgt ctatataaat cctgcagttc tcggatacgg aacagaatgc
     1261 atattgaaaa tgagatataa tgagataaca gaaaatatta ttgaccgtct taatcttttg
     1321 ggagatctat tcttgcatgt tagacaaata ggaggaactt ctgtattttc tttagttgta
     1381 aagactggag ctgaggataa gatccctctt cttattgatt cacttaaacc tgctgtcatg
     1441 cagagcatgt ttgtaagtcg tccatatgta cagaaaggtc ccaaagaatt agattttaag
     1501 ataatcaaat gcttgttacc aaatcctcgt atgcatattt ctgaaattgc tagcaagctg
     1561 tcgatttctg caaaaactgt aagtagaaga ttagacatga tgaaagaaaa taatgtagtg
     1621 caattttctg tattggtcaa tcctgcttct acaagaggtt acatccaatt tgttattgtg
     1681 atatccgtta aggaaacatt gtatcaatat gttcttgaat gcatttaccg tgaactatca
     1741 ggaaaccttc ttctccaggc gcctatcaca agtcctgata atctaatcgt attgatcatg
     1801 ttcagtcagg atattttcac cgtggactca attctaagga aggtcgagtc atttgatggg
     1861 gtgaagacag cagaattaga tatactaact ggaataacac tctcacagga ttggatggtt
     1921 aatgaaattg aacgtagatt gacaaaaatt gagcagataa atctaagaaa attagttaaa
     1981 aaataaaacg aagctattga tgtaaaaaag tgaatttcta tttacatttt ttatttctat
     2041 ttttaaacta gagtgaggtt aaggaggtgg ataatgagaa attccaataa ttttgattca
     2101 ttacttccaa tcagtcgttg agtttcttta ttttctatat aggtgttaga ttcaaagttt
     2161 aattaacaag tagattatga taaggtaaca gaatctgcta gaaaaaaaga atgattttga
     2221 atacagaatg taccttactt ctgtttctct cggtgaacat ggtagagtta ttgggtaagt
     2281 ttcaatggaa accatatcag cacatgcaat agtacggttc cagagggacc gatctgattt
     2341 ttcagatggg tcaaaattag gatttcttgt ctcttttgtt aaaaattagc gttacaataa
     2401 tcaaacggat acaaaaacca cgagtattaa tatgagaggc taaattgtat agtttgaatc
     2461 attgacagat attagagaca aacattacat tgatgggaat ctgaaaagaa ataaaaaagt
     2521 catctggggt ccaattggag taactgctgg taacatattt gcagtcgtct tgattttatc
     2581 gatttatatt caaaactcgg gagccgtcac taatttgttg atgcatgatc atgttagtct
     2641 aaatgtgacc attgatggaa cacctattat cgttcccact catattggca tgaaccagac
     2701 tgggatattc gcagatcccc ttttgtatgc ggacaatacc ctggataaat atggtatggt
     2761 gggaatgtca ccattacaca cacatgattc gagtggtata atccatgtgg aatccaataa
     2821 aatcagatat tacactttag gcgaattttt ggatatatgg aaaggcctca atactgacgg
     2881 taaaaatgtt atagctacag tggatggaag tcccgtatcg gaatttcggg gtatcgtact
     2941 aaataatgga tcaaaaatag tgctagatat aacatctaaa gtcagttaga agtatgccca
     3001 atgactctac aacttctaaa gattgtttaa aatatttata taaagcatcc atagttttga
     3061 ggtacatgtt ttgcaataaa cctctgctat tatttagcgt cttgatattg ggtatatttt
     3121 cagtatcaac ttatagcatg attagtcccc tcgcggctca agagagcaat tattcatttc
     3181 tttacaaatg gggttctcaa ggagtcagtg tgggcgagtt tgcacagcca ctagcaatcg
     3241 caatagatgc taatgacgac gtgtatgtta cggacactgc cagtgaaacc aacaatatcc
     3301 agaagtttac caagaacggg acatttgtta cttcgtggaa tctttctggg ataacaggcg
     3361 acccttttac taacgcaaga ggaataggca tagattcgtt gaatagtgtc tatgttacag
     3421 gaggagcaag ccctaacaca gccgttcaga aatttacaaa caacggcaca tttgtttcct
     3481 cttggggttc gacaggttct ggagatggag aatttgtatc tcctggatgg gtaactatag
     3541 attctgctga taatgtttat gttggagatc ttggagaaac tagtcgaata caaaagtttg
     3601 atagtaatgg cacttttatt acaaaatggg gaggaccggg caccagtgac ggacagttcg
     3661 tcaatccctc cggccttgtt gttgactcct ctgataacat ctatgtaacg gaccgaggta
     3721 acaatcgtgt ccaaaagttt gatagtaatg gcacttttat tacaaaatgg ggaacatcag
     3781 gagcaggcga aggacaattc aagctgccag cagggttagg agttgatact tcaggaaata
     3841 tcttagttgc tgatgcaggt aatgatcgta tccaattgtt tgatagtaat ggtactttta
     3901 ttacaaaatg gggaacatcg ggtgtaggcg atggtcagtt tgaccagcct acaggcatag
     3961 caacagattc ttctggcaat gtatatgttg tagatcgata taacaacaga atacaagtat
     4021 ttgctgggca atgatccctt ccgagcggat tagtccaaaa gaggttaata tgatttttca
     4081 cgcggatccc acttcgaatt tttaaattta ggtatcactt tcaacactag ttctaatgtt
     4141 aacgaaataa tttcatttta ccctggccct cccctgttgc gtgcaggatg taaataaagg
     4201 cacttcccag atttatatcc caaaactgtg tagattgaag tctcatcttc tggttcaagt
     4261 gcttcgtatt taacacctgc tgcacttaca gaaatatatt gtagacacca gtgatcatat
     4321 ctacccacag gttcgaagcg aagatagaca gggtaaaggc taatatcttc tgaatctagc
     4381 ggaggaaagg ctttaggatt attcaatgtg ggattgttta cgtttacttc acattctata
     4441 gcactcatcc ccgctgagta agtccgttcc gcaccacgtt caaaatcttc atatgatgtg
     4501 cctatgtgga actctctgcc acaaaaacca acgtatacct ctccgtctgt tcctgcatct
     4561 tcaatatcgg ctgtccggat tctaaatact attttttgaa tcgttaccat cgtagatatt
     4621 tatacaggtg aaaatataag ctttatacag atttttcttc aattgttccc tgcaatctga
     4681 taattgtcaa aaatttatcc aatctatgag ggaactgtct tatagactct ttttgacttt
     4741 aaggcaaata caaaattttc atatggcgtc aatgctac
//
LOCUS       DASUMD010000195         4672 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_732190, whole genome shotgun sequence.
ACCESSION   DASUMD010000195 DASUMD010000000
VERSION     DASUMD010000195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4672
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_732190"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..251)
                     /locus_tag="VFX26_05315"
     CDS             complement(<1..251)
                     /locus_tag="VFX26_05315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEX5573929.1"
                     /translation="MIPLSEESIVNAVEKVSKSVVNIASVRMMQDQLFRVFPVQGVGS
                     GIVIDTRGHILTNNHVIDGTDRLRVTFGDSKQVNAKVVG"
     gene            complement(384..977)
                     /locus_tag="VFX26_05320"
     CDS             complement(384..977)
                     /locus_tag="VFX26_05320"
                     /inference="COORDINATES: protein motif:HMM:TIGR03618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03618 family F420-dependent PPOX class
                     oxidoreductase"
                     /protein_id="HEX5573930.1"
                     /translation="MLISDGWPQMYVQNDEKYERGKMPTSAEIVDVAPPNIDSDSISK
                     SELLEGVTELNKEELARLFQFRNLAYVGTLSKDGAPHITPVWAEMVEDLILINTFEQS
                     AKIKHLSKDKRIALSVVEQNNPFNMVSIKGKVVEQTTEGADEHLKKLAKRYLGIGKYY
                     YRKPNHKRVILKIKPEKIMGLSIHPAFYFLAYSPWLK"
     gene            1113..1352
                     /locus_tag="VFX26_05325"
     CDS             1113..1352
                     /locus_tag="VFX26_05325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573931.1"
                     /translation="MVEFVVLNDDEQELWEIDYEKKIALNISDLGIIKDKVSNYSGTI
                     EDFLKEKGFSEVHFHDNSSLPSRAHYTSKRNCSFR"
     gene            1405..2694
                     /locus_tag="VFX26_05330"
     CDS             1405..2694
                     /locus_tag="VFX26_05330"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX5573932.1"
                     /translation="MINREARVSLLPILLVNFIGTLGFSIVLPFLVFLVMKFGGDAVV
                     YSILAATYPAFQLIGAPILGKWSDIYGRKRVLLLSNAGTAIGWILFLIALVLPLEGAF
                     NANLAYFGTVVVSLPLLFIFLARAIDGITGGNISVANAYLSDVSSEENRSNNFGKMAM
                     SSNLGFILGPALAGILGGTVYGELLPVLAALLLSIVTIFVIGLLLRESKPKSNPILIS
                     QEGTIRKVFAQECKDCYPPDSVVKLKFQDVFKLKHVSFLLVLYFLIFLGFNVYYSSFP
                     THAANVLQWSVTQLGIFYAVLSGIMVFIQGPVLKKALKKFSEEKLVILGSVILGTNFV
                     LFFSNNLISIYTAVVLFAVGNGLMWPSFMSILSKRAGTVHQGAVQGIAGSFGGMASII
                     GLLAGGVLYNLIGGATFLVSAAIIFSVFIMSFQLVKR"
     gene            complement(2830..3819)
                     /locus_tag="VFX26_05335"
     CDS             complement(2830..3819)
                     /locus_tag="VFX26_05335"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX5573933.1"
                     /translation="MTLSISILGISSNQIGVAQPEQQQINLTAIENQQLMEGVSFQLD
                     NVTFAHHTASVNEIQLHYVMGGKGDPIVLLHGYPQSWYEWRHVMPDLAKNYTVIAPDL
                     RGFGDSSKPMTGYDGKTIAEDIYQLTTQLGFNKIILVAHDVGSQPAFSYTAEHPNNVT
                     KLVIMDFPYPGFLPPAFGQNGPWWFSFYQTRDIPEFLIQGREREYISWFMKGLAYNPD
                     AITEKDIDVWTSHIVAPGGLRGSLEHFRAFPVDAEQNKETAKTKITTPVLALGGDIYP
                     ALGGDYPGNFAFSSLQSLATNVTGITVPLSGHWIPEEQPKFVVEQLLKFVGEK"
     gene            complement(4006..>4672)
                     /locus_tag="VFX26_05340"
     CDS             complement(4006..>4672)
                     /locus_tag="VFX26_05340"
                     /inference="COORDINATES: protein motif:HMM:NF019474.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX5573934.1"
                     /translation="HERLVREIANKANVVVVFVNYILSPEAKYPTALEQVYAVANWVA
                     QNGQSINVDSSRLAVVGDSVGGNLTAALTLLAKERGGPSIRFQVLFYPVTDSNFDTSS
                     YRKYAEGYWLTREGMKWFWNNYTSNETNRKEPTVSPLQASIEQLSGLPPGLLINGEND
                     VLCDEGEAYALKLLRAGVRMTAVRYHGTIHDFVMLNPITNDPAPRGAIEQASQMLKQV
                     LST"
BASE COUNT         1365 a          881 c          867 g         1559 t
ORIGIN      
        1 tttccaacaa cttttgcatt gacttgtttt gaatcaccaa aagttactct tagtctatca
       61 gtcccatcta ttacatgatt atttgtgagt atatgtcccc tagtgtcaat aacaataccg
      121 gatccaacac cttgcactgg aaataccctg aacaattgat cctgcatcat tctaacactt
      181 gcaatgttaa ccacgctctt gctaactttt tcaactgcat ttacaatcga ttcctcggat
      241 agtggtatca aatagcaatc acttcttcaa tgataatatc ggtcatccga tataatattt
      301 agctgttcgc gtatttatat atatcgtata tgcaatatga acgacggttt tctaagttga
      361 aactcacaag aggaacagtt attttacttc aaccaaggtg aatacgctag aaaatagaaa
      421 gctgggtgaa ttgataaccc cattattttt tctggcttta tctttagaat taccctttta
      481 tgatttggct tgcgatagta atattttcca attcctaaat atcgctttgc tagctttttt
      541 aaatgttcat cagctccttc cgttgtttgt tctacgacct ttccttttat tgataccata
      601 ttgaatggat tattttgctc aacgactgat agagcaatcc tcttatcttt tgataaatgt
      661 ttgatcttcg cagattgttc aaatgtattt atcagaatta aatcttcaac catttcggcc
      721 cagactggag tgatatgggg tgcaccatct ttcgacaatg tccctacata agccagattc
      781 ctgaactgaa atagacgggc aagttcttcc ttgtttaact cagtgactcc ttctaaaagt
      841 tctgattttg aaatagagtc actatctata ttcggaggag caacatctac tatttctgca
      901 gaagtgggca tcttgcctct ttcatatttc tcatcatttt gcacatacat ttgaggccat
      961 ccatcagata ttaacattct tccatagttt ttttggtcaa aaattagatg ccgatattta
     1021 gacaaaattt aaggtacctc agctacaaat tttgaatatt cgaactattc tctatgtata
     1081 aataataaat gactgtgctt atgtatgata atatggttga attcgtagtt ctgaatgatg
     1141 atgaacaaga attatgggaa atagattatg aaaagaaaat tgcattaaac atctcagatc
     1201 taggtattat aaaggacaaa gttagcaatt attctggaac gatagaagat tttttgaaag
     1261 aaaaaggttt cagtgaagta cattttcacg ataacagttc tcttccttcg cgcgcacatt
     1321 atacaagtaa acgaaattgt tcatttagat aagtttgcaa gttatgacct tcaaaacttt
     1381 tcattatcat gcaatgccta gatcatgatt aatcgagaag cacgagtatc actacttcct
     1441 atattgttag ttaattttat aggtacacta gggttcagta tagttctacc atttctagtg
     1501 tttttggtca tgaagttcgg aggtgatgcg gtagtttata gtattctagc tgctacttat
     1561 ccagctttcc aacttatagg agctccaata ctaggtaaat ggtctgatat ctatggaaga
     1621 aaaagggtcc ttttgttaag caatgcaggt accgctattg gctggatact atttcttatt
     1681 gcactggtct taccactcga gggagctttc aatgctaatt tagcctattt tggaacagtt
     1741 gtagtatctc ttccgttact tttcatattt ctagcaagag ctattgatgg gattactggt
     1801 ggcaatattt cagttgcaaa tgcctacctt tctgatgtct cgtctgaaga aaacagaagc
     1861 aataattttg gaaaaatggc aatgtcttct aacttaggtt ttattttagg tcctgcactg
     1921 gctggaatct taggaggaac agtttatgga gaactacttc cagttctggc tgcattatta
     1981 ctatcgatag taactatatt tgtaatagga cttctattaa gggaatcgaa acctaagtct
     2041 aatccaattt tgatatctca agaagggaca attagaaagg tttttgcaca agagtgtaaa
     2101 gattgctacc ctccagatag tgttgtgaag ctgaagtttc aagatgtgtt caaactaaaa
     2161 catgtttcat ttttactggt actatatttc ttgatatttc ttggatttaa tgtatattat
     2221 tcttcatttc ctactcatgc cgctaatgta ctccaatggt cagtaactca attaggaata
     2281 ttttatgcag tattaagcgg aatcatggtc ttcatccaag gtcctgtcct gaagaaagca
     2341 ttgaaaaaat tttctgaaga gaaactagtt atccttggca gtgtaatttt gggtacaaac
     2401 tttgttttgt ttttttcaaa taacctaatc tctatttata cagcagtagt tttatttgct
     2461 gttggtaacg ggcttatgtg gccctcattc atgtctatac tttcaaaacg tgcaggaaca
     2521 gttcatcaag gagctgttca gggcatcgca ggaagttttg gtggtatggc gagtataatt
     2581 ggattattag cgggtggagt cttgtataat ttgattggag gagcaacctt tctagttagc
     2641 gccgcaataa tattttcagt ttttattatg tcttttcaac tagtaaagag atgaagtctc
     2701 ccatgaatac tgagattgac tattatcaga attcttactt gttagagtac aatcaaattt
     2761 atcaacaaca cgttaattct cataaagagt aacaggcaag gaggtcgtct caattagtaa
     2821 attcatttct tatttttccc caacgaattt taataattgt tctacaacaa atttaggctg
     2881 ttcctccgga atccagtgtc ctgaaagtgg aactgtgatt cctgttacat ttgtagctaa
     2941 tgattgcaac gaactaaacg caaagttacc tggataatct ccgcctaaag ctggatatat
     3001 atccccacct aacgctaata caggtgttgt aatcttagtc ttcgccgttt ctttattctg
     3061 ttctgcgtct acggggaaag ctctgaaatg ctctaatgat ccgcgcagtc caccgggcgc
     3121 cacaatatga ctagtccata cgtcgatatc tttttccgta attgcatcgg gattgtaagc
     3181 taaacctttc atgaaccaag atatgtactc ccgttcgcga ccttgtatga gaaattccgg
     3241 tatgtcccgt gtttgataaa atgagaacca ccaaggtccg ttttgaccaa acgccggagg
     3301 caaaaagccg ggatatggga aatccatgat aaccaactta gtaacattat tgggatgttc
     3361 cgctgtatac gaaaaggctg gctgagatcc aacatcatgt gccaccaaga taattttatt
     3421 gaaacccaac tgagtcgtca attgataaat atcctcagca atagtcttac catcataacc
     3481 agtcattggt tttgaggaat caccaaatcc ccggagatca ggcgctatta cggtataatt
     3541 cttggctaaa tctggcatta catgcctcca ttcataccat gactgaggat aaccatgcaa
     3601 caacacgatt ggatctccct tgccacccat cacataatgt aactgaattt cgtttacaga
     3661 agccgtatga tgtgcaaatg tcacattatc gagctgaaaa gatacgcctt ccatgagttg
     3721 ttgattttca atagcagtta ggttaatttg ttgctgttcc ggttgtgcaa ctccaatttg
     3781 attcgagcta attcccaata tagagatact taatgtcata aataaggtaa caaaggcaga
     3841 tactaaacag tccttaaaaa atctcaatgt agtttagttg agtttgtgtt atttaagtct
     3901 gaattcatga aaaaacttgg tttcaaagta aactgaaatt atttgtagat aaaagtgtac
     3961 ggagtaagta tgagtgacta gtgacttaat cttatgacgc tattgctaag ttgacaatac
     4021 ttgtttcaac atttgagaag cttgttcaat ggctccccgt ggtgcgggat catttgtaat
     4081 tggattcaac attacaaagt cgtgaatagt accatgatat cgaaccgcgg tcattcggac
     4141 tccagcccgt agaagtttca gcgcatatgc ttctccttcg tcacagagta catcgttctc
     4201 accattgatg agaagtcctg gcggtaatcc actcaattgc tctatcgatg cttggagtgg
     4261 agaaaccgtt ggttcttttc gatttgtttc atttgaagta tagttattcc agaaccattt
     4321 catgccctcg cgggtaagcc agtacccttc tgcatatttc ctgtaagatg atgtatcaaa
     4381 gttggaatca gtaactgggt agaagagtac ttgaaatctg atggagggac ctccacgctc
     4441 cttggctaac aaggtgaggg cagcagttag attacctcct acactatcgc caactacggc
     4501 taaacgggaa gaatctacat tgatagactg gccgttttgt gctacccaat ttgctacagc
     4561 ataaacttgt tctagtgcag tcggatattt tgcctctggt gacagaatat agttaacaaa
     4621 cacgacaact acatttgctt tatttgctat ctctcttacc agtctttcgt ga
//
LOCUS       DASUMD010000196         3469 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_401399, whole genome shotgun sequence.
ACCESSION   DASUMD010000196 DASUMD010000000
VERSION     DASUMD010000196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3469)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3469)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3469
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_401399"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            229..1446
                     /locus_tag="VFX26_05345"
     CDS             229..1446
                     /locus_tag="VFX26_05345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004013 - adenosylhomocysteinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylhomocysteinase"
                     /protein_id="HEX5573935.1"
                     /translation="MKNSRLIDNGKNSWEWACSHMGIINEIVNQNFNNKPLKGLRLGL
                     SLHVTKETSVLVIAAAKLGSKITLCSANPLSVQEDIAAFLSSQGVKVLAWKDETEKEY
                     LDNLRQVLEYHPQILTDDGSNLHVMAHKKKSQGILGGTEETTSGVTRLKALEEQRKLR
                     YPVIGVNEARTKHLFDNQYGTGQSTLTGIIRLTNVLIAGKHIVICGYGNVGRGVAARA
                     RGLGAIVTVVEVDSLKALEAYMDGYSVKKISQVVENADIFITCTGQKNVIIEKHFKRM
                     KNGVILANAGHFDNEIEVEKLISNSKEIYSIRPYLDCFHIKGRKIFLLSKGRVVNLVG
                     GEGNPPEVMAMSFANQLLSIMHIFKNHERMQKKVYPVPEKIDSNVAKLSLKYLRISID
                     KLSPLQRKYAKSY"
     gene            1554..1880
                     /locus_tag="VFX26_05350"
     CDS             1554..1880
                     /locus_tag="VFX26_05350"
                     /inference="COORDINATES: protein motif:HMM:NF025178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HEX5573936.1"
                     /translation="MKLKNLIMTWMRAASIEDFEKKTGKEVNLGGSRIAIFRTKGKFY
                     AIEALCRHQDGSLAPGRVDGEVVECPLHSWHYNVRTGELLDYLEGVKLKTYKIDLKGK
                     DIYIDI"
     gene            1926..3332
                     /gene="cysS"
                     /locus_tag="VFX26_05355"
     CDS             1926..3332
                     /gene="cysS"
                     /locus_tag="VFX26_05355"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR00435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HEX5573937.1"
                     /translation="MKIYNKLSDTLEDIGTTEDKKIRIYVCGITVYDDCHIGHARTIV
                     VFDILRRYLIHKGKELVYVQNFTDVDDKIINRAKLDGKTPDEISSKYIESYFEDFSKL
                     NVLKADFYPKATDHIIEIIKAIKILKEKNYTYSTLNGVYFKVRAFPNYGKLSKKQIDE
                     LEEGTRIETDRLKEDPLDFALWKFSSDVPNWESPWGRGRPGWHIECSVMVSKFLGNEI
                     EIHGGGTDLIFPHHENEIAQSETFNEKKLAKLWMHVGMITINSEKMSKSLRNMIVLKN
                     ALRKWGSNVLRLYLISSQYSKPMDYNDEILQESLQKWRQIEHCIYELRTTKNVSENMD
                     EFEDKCNGFLNNFLSSLDSNLNSPLALTFFMKLVSYVNNLSSSEKLTTRMADKALPIV
                     DTIMNIIGIKIMEIENGTKIKIEEMIDRRNNLRAEKKFQAADNLRKKIFELFAIELTD
                     HSKYTSWKKKERIEFEYE"
BASE COUNT         1281 a          495 c          678 g         1015 t
ORIGIN      
        1 aagtagacga gatatgacca agatgaatct ctccgtttgc atatgggagt gcgcttgtta
       61 ttattacact ctctgttttg gaattgagca cagcagaaac agtgattact acggggaatt
      121 aaaactatct gaaacaatca aagttacaag actttctggg tctcctttat ttcaatgtcg
      181 acgatcatga ctaattagtt ataacatatt gatttggtgt atagccagat gaagaatagc
      241 agactaattg acaatggaaa aaactcatgg gaatgggcat gttctcatat gggtattatt
      301 aacgaaatag tgaatcagaa ctttaacaac aagccgttaa agggtctaag acttggactt
      361 tcactgcatg ttacaaaaga aacatccgtt ctcgtaatag ctgcagctaa attgggatct
      421 aagattacat tgtgttcagc aaatccctta tcagtacaag aagacatagc agcatttctt
      481 tcatcacaag gagtcaaggt cttggcatgg aaagatgaaa ctgaaaagga gtatttggac
      541 aatttaagac aagttttgga atatcatccc cagatactta cagatgatgg ctcaaacctt
      601 cacgttatgg cacacaagaa gaaaagccag ggaatattgg gtggaacaga ggaaactaca
      661 tcaggagtta caagactaaa agcactggaa gaacagcgga aattgcgata tcctgtgatt
      721 ggtgtaaacg aagcacgcac aaagcactta tttgataatc aatatgggac aggacaaagt
      781 acactaacag gaattattag actgactaat gttcttattg ctggtaaaca tatagttatc
      841 tgtgggtacg gtaatgtagg cagaggagtt gcagcaagag ctagaggatt gggagcaatt
      901 gttactgttg ttgaggttga ttcacttaaa gctctagaag cttacatgga tggttacagc
      961 gtaaaaaaaa ttagtcaagt agtagaaaat gcagatattt ttataacatg cacggggcaa
     1021 aaaaacgtaa ttattgaaaa acattttaaa agaatgaaaa atggagtaat acttgcgaat
     1081 gcaggacatt tcgacaatga aatagaagta gagaaactga tttcaaattc aaaagagatc
     1141 tattccatta gaccatattt ggattgtttc cacattaaag gcagaaaaat tttcctactg
     1201 tccaagggca gagttgttaa tttagtgggg ggagagggaa atcctccaga agtaatggca
     1261 atgtcttttg caaatcaact tctttccata atgcatattt ttaaaaatca tgaaagaatg
     1321 caaaagaaag tttatcccgt accagagaaa atcgattcta atgtcgcaaa gttatcatta
     1381 aaatatttgc ggataagtat tgataagtta agcccacttc agagaaaata tgcgaaatcc
     1441 tactgatgtc tgggtaattt gctctacagt ttccatgtaa agtctatttt tgaaacttca
     1501 tgatgaagtc tgaagaattc acttaaaatt gacacataat attttataag tgattgaaac
     1561 ttaaaaacct aattatgact tggatgcgtg ctgcaagcat tgaagatttt gaaaagaaaa
     1621 ctgggaaaga agtaaatcta ggtggaagta ggattgcaat ttttagaaca aaaggtaaat
     1681 tttatgccat cgaagcattg tgtagacacc aggatggctc gcttgctcca ggtagagtgg
     1741 atggagaggt cgtggaatgt ccattacatt cgtggcacta taacgtacgc actggtgaat
     1801 tattagatta tcttgaaggg gtaaaattaa aaacgtataa aattgatttg aaaggcaagg
     1861 atatttacat agacatttga atcaattatt gttacctgac attcataaat tgctatagtt
     1921 ctaatttgaa aatatataac aagctttctg atactcttga agatattggt actacagaag
     1981 ataaaaagat taggatctat gtttgtggta ttaccgtata tgatgactgt catattggac
     2041 atgctagaac aatagtagtt tttgatattt taagacgata cttaattcac aaaggtaagg
     2101 aattagtata tgttcaaaac tttaccgatg tcgatgacaa aataattaat agagctaaat
     2161 tggatggaaa gactcctgat gaaatttcgt ccaagtatat agaaagttac tttgaagatt
     2221 tttccaaatt aaacgttctc aaggccgatt tttatccaaa agcaactgac cacataattg
     2281 aaataataaa agctataaaa atattaaaag aaaaaaatta tacttattct actctaaacg
     2341 gagtatattt caaagtgaga gcgtttccaa attatggtaa actatcaaag aaacaaattg
     2401 atgagcttga agaaggtact agaattgaaa ctgatagatt gaaggaggat cccttagatt
     2461 ttgctctgtg gaaattctcc tcagatgttc caaattggga aagtccttgg ggaagaggca
     2521 gaccaggttg gcatattgag tgttcggtca tggtatcaaa attccttggt aatgaaatag
     2581 agattcatgg aggtggcact gacctgatat ttcctcatca cgaaaatgaa attgcacaat
     2641 ctgaaacttt taacgaaaaa aaactagcaa aactatggat gcatgtagga atgattacaa
     2701 ttaattcaga aaagatgtca aagtcgctca gaaatatgat agtacttaag aacgctctta
     2761 gaaaatgggg ttctaacgtg cttagattat acctgatttc ttctcaatat tcaaaaccta
     2821 tggattacaa tgatgaaata ttgcaagaat cattgcaaaa atggagacaa attgaacact
     2881 gcatctatga gcttagaaca actaaaaatg tatctgaaaa catggacgaa tttgaggata
     2941 aatgtaatgg tttcctaaat aattttttgt cctcactaga tagtaacctg aattcaccat
     3001 tagcattgac attttttatg aagctcgttt cgtatgttaa caacctaagt tcatcggaaa
     3061 aattaactac cagaatggct gataaggctc tacctatagt agataccatc atgaatatca
     3121 taggtattaa aataatggag attgaaaatg gtactaaaat caaaattgaa gagatgattg
     3181 atcgtagaaa taatctcaga gctgagaaga aatttcaagc ggcagataat ttgagaaaga
     3241 agatctttga attatttgct attgagctga cagatcatag caagtacaca tcatggaaaa
     3301 aaaaagagag aattgaattc gaatatgagt gaatatagtt aaatcaatgg tttctaaaga
     3361 attcattact cacagtttat tttttcttac aaaaggatac tctaagactt gataaacttt
     3421 taattattca agacatcgag taatcttaat tgaaaaacaa atacgcatt
//
LOCUS       DASUMD010000197         2558 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1175089, whole genome shotgun sequence.
ACCESSION   DASUMD010000197 DASUMD010000000
VERSION     DASUMD010000197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2558)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2558)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2558
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1175089"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..562)
                     /locus_tag="VFX26_05360"
     CDS             complement(<1..562)
                     /locus_tag="VFX26_05360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HEX5573938.1"
                     /translation="MKKIILDEDLKYIDRNGNLLRSKTELSFSRLLSFLGKDYQYDFK
                     IKLMNGNEVLVDFRVDNKYIEILDSEQDLEKFNQIKKNNPDLDIVGIGKSKFGVKSGD
                     FETISFVDSEGDQIGSIFLEDSSLAFDYAHILPLVEKCSILHGHTSTVMVEIIGKMVN
                     NLVIDFSDAKRIIKDTLSTLDHKFFIN"
     gene            697..1449
                     /locus_tag="VFX26_05365"
     CDS             697..1449
                     /locus_tag="VFX26_05365"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase C-terminal domain-containing
                     protein"
                     /protein_id="HEX5573939.1"
                     /translation="MYNSDLIDALFATVSEYLKGINKIGIAFSGGIDSTLLAIICKNM
                     NIDTTLLTVGFHDSNDIRFSKSISQKIKMNHKILEIDKDDFSAISKKITNEMTCRNLS
                     HIENCIAFSYLAQLASNNSLSVVLTANGFDELFCGYNNFRFIFNQGNDTINQTIESRI
                     LNELELINEIKQVVEKYNISILQPFLSKEFISIAMKFPIYNKIVSHDDILRKHIIRKI
                     ALSFGIPPEVIIRRKKALQYGSLIHKYYKKID"
     gene            complement(1446..>2558)
                     /gene="purB"
                     /locus_tag="VFX26_05370"
     CDS             complement(1446..>2558)
                     /gene="purB"
                     /locus_tag="VFX26_05370"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP
                     AMP-lyase (fumarate-forming) activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEX5573940.1"
                     /translation="ISEYCSPSTKPWIHYGLTSNDVVDTSTSMQLKEAFEIIEPKILK
                     LISLLISKARRYNSLPSVGRTHGQHASIISFGLKFAVWVNELSYHVERIEEGKKRFLL
                     CKTLGVVGTGSLMGSKALDVQKSVAKSLGLYSIEAATQVIPRERLAEVQFVISLIGST
                     LDKIATEIRNLQRTEIGEVEEPFKKGQLGSSAVPVKRNPIKSERISSLARILRSFSNI
                     AQENIPLWHERDLSNSANERFTIPMGVILLDEMINSMIKVIEGLSVNRQKILDNINET
                     KGRIFAEFILEALVKKGIPRMKAYDNIQHVAFVTLLDDKDFKEAIMQDPSIGAHLSKN
                     ELRTIFDPNTHLAASTRIIEDVIRKAGQVRKNYKGR"
BASE COUNT          812 a          447 c          385 g          914 t
ORIGIN      
        1 tgttaataaa gaacttgtga tccaatgttg aaagtgtatc tttaatgatc ctttttgcgt
       61 cactaaaatc gatgactagg ttattcacca tttttccaat gatctctacc ataacagtag
      121 atgtgtgacc atgtagtatc gagcattttt caaccagagg taaaatatgt gcatagtcga
      181 acgctagtga tgaatcttct aaaaatatag atcctatctg gtccccctca gaatcaacaa
      241 aagaaattgt ttcaaaatca cctgatttga caccaaattt tgatttgcca atacctacga
      301 tatcaagatc aggattattc ttttttatct gattgaattt ttctaggtcc tgttctgaat
      361 ctagaatttc aatatatttg ttatcaaccc taaaatcaac gaggacctca ttaccattca
      421 ttagcttaat cttaaaatca tattgataat cttttcctag gaatgaaagt aatcttgaga
      481 aagataattc tgtcttactc ctaagcaaat ttccatttct atcgatatat ttgagatctt
      541 catccagaat tattttcttc atttatttta tttcaaagaa tccagatata tacaagttac
      601 tttttttgtg aattcatatc cataggattc caaatcagaa tttagtatta cgtaaaagga
      661 taaaacataa atgaaattat ttttggttga agtgtattgt acaattccga cctaattgat
      721 gctttgtttg caacagtatc tgaatatttg aaaggaatca ataaaattgg catcgctttc
      781 tcgggtggga tagatagtac attactcgca ataatttgta aaaatatgaa tatcgatact
      841 acgttattga ctgttggatt ccatgattcc aatgatataa gattttcaaa atcaatatca
      901 caaaaaatta aaatgaatca caaaatttta gaaatagata aagatgattt ctcagcaatt
      961 tctaaaaaaa taacaaatga aatgacctgt agaaatttat ctcatataga aaactgtatt
     1021 gcttttagtt atttagctca attggcaagt aataacagtc tgagtgttgt actcacggct
     1081 aacggttttg atgagctctt ctgtgggtac aataatttca gattcatatt taatcaaggt
     1141 aatgatacta tcaatcaaac tattgagtca aggatcttga atgaattaga attaataaat
     1201 gagataaagc aggtagtaga aaaatataat attagtattt tacaaccgtt cctctcgaag
     1261 gaattcattt ctatcgcaat gaagtttcca atttataata aaatagtaag ccatgatgat
     1321 attttgagga aacacatcat tagaaagatt gcgttatctt ttgggatacc accagaggtc
     1381 atcattagga gaaaaaaagc gttacagtac ggttctctaa tccacaaata ttataaaaaa
     1441 atagattaac gccctttgta atttttacgt acttgcccgg cttttcttat gacatcctct
     1501 attattcttg ttgatgcagc cagatgagtg ttaggatcaa atattgttct caattcattc
     1561 ttgcttaaat gcgctccaat agaagggtcc tgcattattg cttctttaaa gtctttatca
     1621 tcaagaagag ttacaaatgc aacatgttgt atgttatcat atgccttcat tcgaggaata
     1681 cctttcttaa ccaaggcctc aagaataaat tctgcaaaaa ttcttccctt tgtttcattt
     1741 atgttatcta gaattttttg cctatttaca cttaatcctt ctattacctt tatcatgctg
     1801 tttatcattt catctaaaag aatgacgccc atcggtatag taaatctttc atttgcggaa
     1861 tttgagagat ctctttcatg ccatagtgga atattctctt gggctatatt tgaaaaagaa
     1921 cgaagtattc ttgcgagtga ggatattctt tcgctcttta tgggattcct ttttactgga
     1981 accgcactac ttcccaactg ccccttttta aaaggttctt ctacttcacc aatttcagtt
     2041 ctttgtaaat ttcttatttc agttgcaatt ttatccaaag tagatcctat taatgaaata
     2101 acgaattgaa cttctgctag tctctccctg ggtattactt gtgtagctgc ctctatagaa
     2161 taaagcccaa gcgacttggc cacgctcttt tgaacatcta aagcctttga tcccatcaat
     2221 gagcctgttc caactacacc taacgtttta cacaaaagga atctcttctt accctcttcg
     2281 attctttcta catgatatga aagttcgttt acccatactg caaattttaa tccaaaagaa
     2341 attatgcttg cgtgttgtcc atgagttctt cctacggaag gtagcgagtt gtatcttctt
     2401 gccttactta tcaataacga aattagcttc aaaatttttg gctcaattat ttcaaatgcc
     2461 tcttttagtt gcattgacgt agatgtgtct acaacgtcgt tactggttag tccgtaatgt
     2521 atccacggtt ttgttgaagg tgaacaatat tcacttat
//
LOCUS       DASUMD010000198         2843 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_622955, whole genome shotgun sequence.
ACCESSION   DASUMD010000198 DASUMD010000000
VERSION     DASUMD010000198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2843)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2843)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2843
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_622955"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..668
                     /locus_tag="VFX26_05375"
     CDS             <1..668
                     /locus_tag="VFX26_05375"
                     /inference="COORDINATES: protein motif:HMM:NF016312.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="D-aminoacyl-tRNA deacylase"
                     /protein_id="HEX5573941.1"
                     /translation="SENNLLYLDNLDEKYPNTLCYIFLSQHRSQANIPALTCHSTGNF
                     DKNNFGGKERELGICYPWIQKQYLIELNNNKDTVPTYDIIIESTHHGPTSLKKPILFI
                     EIGSAEKQWMDKNAAITVCSSLFRVITRKHEFCEKVAIGLGGNHYPTKFNKILMESEY
                     GLGSIAAKHDLPYLDNSLIDQMIRRNIEKVTCVIVDAKGLGKEKSRILTALDEIGIEA
                     IKI"
     gene            725..1078
                     /locus_tag="VFX26_05380"
     CDS             725..1078
                     /locus_tag="VFX26_05380"
                     /inference="COORDINATES: protein motif:HMM:NF013222.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MGMT family protein"
                     /protein_id="HEX5573942.1"
                     /translation="MSFNKRNSNKKASTGHNNHVNSQAVYSLVSNIPPGKVITYGQLA
                     TSLGNSRAARGIGKVLNKNPRPVIVPCHRVVCSDGHVGGYMYGKKRKISLLIKEGIPI
                     DNDIIKDFEKYRISS"
     gene            complement(1084..1533)
                     /locus_tag="VFX26_05385"
     CDS             complement(1084..1533)
                     /locus_tag="VFX26_05385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19e"
                     /protein_id="HEX5573943.1"
                     /translation="MVVNLRKKRELIARVLGVGSNRIRFEPDKLDDISDAITREDMRS
                     LVKNGTIWTVKVRGISRSRAEKKLKTRRKHGTSAGSKKGKKTARAGKKEVYVKKTKAM
                     RRHLKILKARNEINRETFWALYKKIKGGNVRSLAHLRDLAKQAKMHK"
     gene            complement(1533..2045)
                     /locus_tag="VFX26_05390"
     CDS             complement(1533..2045)
                     /locus_tag="VFX26_05390"
                     /inference="COORDINATES: protein motif:HMM:NF006332.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32e"
                     /protein_id="HEX5573944.1"
                     /translation="MVINKELLQLRKKIADKRPDFVRQESWRYKKLAANWRRPKGKDN
                     KMRKQVSGVPPLVKVGYKGPRKSRGLHPSGYNDILVFNTRDLSKIDPKVDAVRIAHGV
                     GNKKRIDIVTEATKLKIKILNPGKVEALKKLPKKVETKPKKEAEPKVEKPKKESKAKT
                     KNVGKKVSKS"
     gene            complement(2529..>2843)
                     /locus_tag="VFX26_05395"
     CDS             complement(2529..>2843)
                     /locus_tag="VFX26_05395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HEX5573945.1"
                     /translation="ESEDQDGKPLPCRFLDDCGSCKIHPDKPGVCWLYPFSSWMESSN
                     GKPIVHASYQLTGDCPGFYTDKTSQPMMEILQEYSKRIFEYNMSILRTTREKYGFINI
                     VQ"
BASE COUNT          847 a          521 c          490 g          985 t
ORIGIN      
        1 tttctgaaaa taatttgctc tatcttgata atctcgacga aaaatatccg aatacattat
       61 gttacatttt tctgtctcaa catagatccc aggctaacat cccagcatta acatgccatt
      121 ccacaggaaa ttttgacaag aataattttg gtggcaagga aagggaatta ggaatatgtt
      181 atccatggat tcaaaaacaa tacctaattg aattgaataa taataaggat actgttccta
      241 cgtatgatat tattatagag tctacgcatc atggacccac atcgctaaaa aaaccaatac
      301 tgtttattga aataggatca gcagagaaac agtggatgga taaaaatgct gcgattacag
      361 tatgcagttc tttgtttagg gtaatcacaa gaaagcatga attttgtgaa aaggttgcca
      421 taggacttgg gggtaatcat tatccaacaa aattcaataa gatattgatg gaatcagaat
      481 atggtttggg ttctatagct gcaaaacacg atttaccata tttggataat tccttgatag
      541 atcaaatgat acgaagaaat attgaaaaag taacttgtgt tattgtggat gcaaagggat
      601 tagggaaaga gaaatctaga atattgactg cactagacga aattggaatt gaagcaataa
      661 aaatttagga ttaataatga cacaaaaatt atttatgatt gtgcaacata actagactat
      721 gtctatgtct ttcaataaaa gaaatagtaa taaaaaagca agtacaggtc acaataatca
      781 cgtaaatagc caagctgtct attctcttgt ttctaatatt cctccaggga aagttataac
      841 gtacggtcaa ttggcaacat cacttggtaa ttctcgtgcc gctcggggga taggaaaagt
      901 tctaaataag aatccgcggc cagtcatagt gccttgccac agagttgttt gttcagacgg
      961 acatgttgga ggatatatgt atgggaagaa acgaaaaata tcgctgttaa ttaaagaagg
     1021 aattcctatt gataatgata taataaaaga ttttgaaaaa tataggatct caagttagga
     1081 ttattactta tgcatttttg cttgcttggc tagatctctc aagtgtgcaa gagatcggac
     1141 atttccacct ttaatttttt tatacagtgc ccaaaaggtt tctctattaa tttcatttct
     1201 ggcttttagt atttttaaat gacgtctcat ggccttggtt tttttaacat aaacctcttt
     1261 cttgccggcc ctggcagttt tcttaccttt ctttgaaccg gcagacgtac cgtgcttcct
     1321 acgtgtcttt agtttctttt ctgctctcga tctagaaatc cctcttactt ttacagtcca
     1381 tatagtacca ttcttgacta aggaacgcat gtcctctcgt gtaatagcat cagatatatc
     1441 atcaagctta tcaggttcaa atcttatcct atttgatcca acacccaata ctctagctat
     1501 tagttctctt ttttttctta aatttacaac cattatgatt tagacacttt ttttcctacg
     1561 tttttggtct ttgcttttga ttctttcttg ggcttttcga cctttggttc tgcttctttc
     1621 ttgggctttg tttcaacttt tttaggtaat ttctttaatg cctccacctt gcctggattc
     1681 aaaatcttga ttttcagctt tgtggcttct gtgactatat ctattctttt tttattccca
     1741 acaccatgtg ctattctaac cgcatctacc tttggatcaa tttttgataa atctctggta
     1801 ttaaaaacca aaatatcatt ataacctgat ggatgtaagc ctcttgattt tctaggtccc
     1861 ttataaccta ccttaaccaa aggcggaaca ccggatacct gctttctcat cttattgtct
     1921 tttcccttgg gtcttctcca attagctgca agtttcttgt acctccagct ctcttgtctt
     1981 acaaaatctg gtcttttgtc tgctattttt tttctgagtt gcaggagttc cttattaata
     2041 accatagaac tattgtcaag accctatttt ttaaataaaa atgtttctag ataaacttgg
     2101 cctgtttcgt agccttatat tagcaattag tcctagcaaa aattgtgact tctatcagtc
     2161 ttcaggccat tggcggtcat gaataacgag tacttcccca acatttactc atacatcgat
     2221 tcaatgaata ggatgaaaca accgtagaaa tttgatattg ttatattctt tatgtgacaa
     2281 ttatatgcta attaattgac tgaatatcac actggagaat tggcaccgca tagcggttca
     2341 ttcaatttct tgaggcatgc atctaccttc ctgaaacgta ttcgaaaaga aagatgttcg
     2401 gtaccgccaa acgaacgtat ggtgcctcta tcgaaaggtg atccctttcc accatgcagg
     2461 tgttgtaatg cgagtgttat ctggaacggt tgaggataat ttaattttta aagcaacatt
     2521 ttacaaaatc attggacaat gtttatgaat ccatattttt ctcttgtagt tctaagaatt
     2581 gacatattgt actcgaaaat tcgtttcgag tattcttgaa ggatttccat cataggttgt
     2641 gatgttttat cagtgtaaaa tccgggacaa tcacccgtta attggtatga tgcatgcaca
     2701 ataggcttgc cattactaga ttccatccac gaagaaaatg gatagagcca gcaaacgcct
     2761 ggtttgtctg gatgtatttt acaacttcca caatcatcta agaatctgca aggtagtggt
     2821 ttcccatctt gatcttcgct ttc
//
LOCUS       DASUMD010000199         3538 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_844322, whole genome shotgun sequence.
ACCESSION   DASUMD010000199 DASUMD010000000
VERSION     DASUMD010000199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3538)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3538)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3538
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_844322"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            290..544
                     /locus_tag="VFX26_05400"
     CDS             290..544
                     /locus_tag="VFX26_05400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573946.1"
                     /translation="MTKMCKVAIETNGVNQEEGKAWVDELANIYADMEIENVSVSGNK
                     IAFDAGFSGMDDTQPDDIKMRLDEYLTMNEAFQTKSIKVS"
     gene            682..924
                     /locus_tag="VFX26_05405"
     CDS             682..924
                     /locus_tag="VFX26_05405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573947.1"
                     /translation="MTCKGICIRHKAQKPVGSGRYVSGQKRCQICEIFIKWDGLWCPC
                     CGYRLRTKPRNLKYKAKLRARRVKEIEPILVAAPVT"
     gene            complement(921..1793)
                     /locus_tag="VFX26_05410"
     CDS             complement(921..1793)
                     /locus_tag="VFX26_05410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573948.1"
                     /translation="MKIPDEVQAFVSKNSDLELALIGCRADSSHISYDCCEYDIAVLG
                     RNENSYDKKIIQLGDNTIEFLHFPNYQKYGHDDISLFNMIKLEASNDLFISPPPLEID
                     SKSWYIAAGKRKVVDSLFNVSKNSRNRAKLDSSLNLKIAAYDLIEGILLISQTKPMPI
                     HELNQLRQVEIRKDFINEAIQVCIECLGIERATRTIINRSFKALKEILKERYDVELLS
                     SKIDFLLKQGLLADCYYYIGKLVCSHLENKDNASQLNYHKLNSIALDLTSDYEKVKKM
                     SALIKRDCKLILKN"
     gene            complement(1845..2582)
                     /locus_tag="VFX26_05415"
     CDS             complement(1845..2582)
                     /locus_tag="VFX26_05415"
                     /inference="COORDINATES: protein motif:HMM:NF014419.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573949.1"
                     /translation="MADNSGISLRVFENEPRDKGRNIVRIDPEIMQVLNISDGDLISV
                     IGPQNGTNIICLSLHPTDISNENEIIRIDTKTRDLIGAALGDIVKIKKAILSEKNNKS
                     TRMDTLEISEDIANSIIITGSCHNFEIEHPKIMEFLKSLEKEVHLNHNYCKCYANGKK
                     TLGWDFFDIAVDLRLIQKLIEIHPEINKQEAASLEGRFALWLQAKIKKTKHDYHLKVS
                     EIPYEPVSGFRLNPNDFRNKEDMENLR"
     gene            complement(2794..3366)
                     /locus_tag="VFX26_05420"
     CDS             complement(2794..3366)
                     /locus_tag="VFX26_05420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methane monooxygenase/ammonia monooxygenase
                     subunit C"
                     /protein_id="HEX5573950.1"
                     /translation="MTKMAQMPALIPKEVEIQRLKKIYIMVIMLGSIAASVEVDNFVD
                     GSLHQTAIRDSAFTPAHWWLYSHFVALPLGWGFVAMYDRRVPVLRGPGNSMNTGLKIT
                     IIGYLATMFTIGVNEMWHFWFVEEIFAVPNHWMFNMGVVVAFMGALAYVVRVYARLVE
                     LGAETPGKNPYVAEMYKLALEGKLYSRSIP"
BASE COUNT         1126 a          610 c          629 g         1173 t
ORIGIN      
        1 aaatcaaaaa tagcaaatgt gcgattgtcc tagcgttcat ttctacgagg tagagtttaa
       61 gctcacggga atgaaagtaa tagcgacgca caaaaattgc ggagaccctc tgagcgacga
      121 gcaatttaca aagtttgaaa aagaactagt aaagtattgg ggaattgaag aagcttaata
      181 ctggaaaaac aattaggttc aattagggtt taaatccata tgctaggata gcaaaaagaa
      241 tgcgtcaact ttattaatgc cgaattttaa ttttctttag tgaatttgat tgactaaaat
      301 gtgtaaagtc gcgatagaaa ctaacggcgt aaaccaagaa gaaggcaagg catgggtgga
      361 cgaattagct aacatctatg cagatatgga aattgaaaat gtgtcagtct ctggaaacaa
      421 gattgcattt gacgctggat tttcaggtat ggatgatact cagccagacg acatcaagat
      481 gagactagat gaatatctta caatgaatga agcctttcag acaaaatcta taaaagttag
      541 ttaaaaaaag acatattttt tttattttct ttttctcaaa catgtaaaaa attaataaag
      601 taaattatta aaattcaaaa ttttgtaaaa ttaatgtgca tatttaaata gttgagatgt
      661 tttttatata tggaaggaaa gatgacttgt aaaggaatat gtatacgaca taaagcccaa
      721 aagccggtcg gttcaggaag gtatgtaagc ggtcaaaagc gatgccagat atgtgaaatt
      781 ttcataaaat gggatggatt atggtgccca tgttgtggat atagactgag aacaaagcct
      841 agaaacctga aatacaaggc taaattaagg gcccgaaggg taaaggagat tgaaccaatc
      901 ttggttgctg ctcctgttac ttaatttttc agtataagct tgcagtcgcg ttttatcaac
      961 gcagacatct tctttacctt ttcataatca cttgttaggt ccaaagctat gctgttaagc
     1021 ttgtgatagt tcagctgaga ggcattatcc ttattttcaa gatggctaca gactagttta
     1081 cctatgtagt aatagcaatc agcaagcaat ccttgtttca gtaaaaaatc aatttttgat
     1141 gataagagct caacatcata tctttctttg aggatttctt ttagagcctt aaaggatcta
     1201 tttatgattg ttcttgtagc cctttctatt cccaggcatt cgatacagac ttgaatagct
     1261 tcatttatga aatctttgcg aatttcaacc tggcgtaact ggtttaattc atgaataggc
     1321 attggctttg tttgagagat taaaaggata ccttcaatga gatcgtacgc agctattttt
     1381 agatttaacg aggaatctaa ttttgctcta tttctactat ttttagaaac attaaagagc
     1441 gaatcaacga ctttccgttt tccagctgca atataccaac ttttactgtc tatctctaga
     1501 gggggtggag aaatgaacag gtcgtttgac gcctctaatt ttatcatgtt gaaaagtgaa
     1561 atgtcatcat gaccatattt ttggtagttt ggaaaatgca aaaattctat tgtgttatct
     1621 ccaagctgta ttattttttt atcgtagcta ttttcgtttc ttccaagaac agcaatatca
     1681 tattcacagc aatcatagga aatatgagag ctatccgccc tacaaccaat aagagctagt
     1741 tcgaggtcac tgtttttgct cacgaaagct tgaacttcgt ctggtatctt catttcttca
     1801 tttcttcatt tcttaatttt aaaacaaaat aaaatgatac tagtctagcg aaggttttcc
     1861 atatcttctt tattcctgaa atcattagga tttagtcgaa atccgcttac gggctcgtag
     1921 ggaatttcac ttactttcaa atgataatca tgtttagtct ttttgatttt tgcttgtaac
     1981 cagagtgcaa atcgtccctc caaacttgcg gcttcttgct tgttaatctc aggatgtatt
     2041 tctatcaatt tttgtatcag tctcaagtct acagcaatat caaaaaaatc ccaccccagt
     2101 gtttttttgc cattagcata gcatttacaa tagttatgat tcaaatgtac ttctttctca
     2161 agtgacttaa ggaattccat tatctttggg tgttctattt caaaattatg acaagacccg
     2221 gtgattatta tggaatttgc tatatcctcg gagatttcaa gggtgtccat ccttgtggat
     2281 ttgttatttt tttcagacag tatagccttt tttattttaa caatatctcc aagcgctgca
     2341 ccaatcaaat ctcttgtttt ggtatcaatc cgaattatct cattctcatt gcttatatca
     2401 gtaggatgca aggacagaca aataatgtta gttccatttt ggggaccaat aacgctaata
     2461 agatcaccat cagaaatgtt taatacttgc atgatttctg gatcaatcct tacaatattc
     2521 ctacctttat ctcgaggttc attttcaaat actctgagag aaattccaga attatcagcc
     2581 atatatctat catgcatttt tgtatataag aatattttca aatccaggat tgatgatgat
     2641 ttattgttag aataactttt ttccatagta gaggagtatg ttaactatct aacagggatg
     2701 tggttaatga gctatagtat caactaggac ttgacaaaaa agaaaaaaaa ggtcgtcgtt
     2761 ttcctgcatt tgttgacagc atgacaaatt agcttatgga attgatctgc tgtacagctt
     2821 tccttcgagt gcaagcttgt acatctcagc cacgtatggg ttctttccag gagtttcagc
     2881 gcccaattct actagacgtg cataaactct tactacatat gcaagagcac ccatgaaagc
     2941 tactactact cccatgttaa acatccagtg gttcgggact gcgaaaattt cttccacaaa
     3001 ccaaaagtgc cacatttcat ttacaccaat tgtaaacatg gttgcaagat agcctatgat
     3061 ggttatcttt aaaccagtgt tcattgagtt tccaggtcct ctcagtacag gcacccttct
     3121 gtcatacatt gccacaaatc cccaacctaa tggtagggct acaaagtgac tgtataacca
     3181 ccaatgagct ggtgtaaatg cgctgtctct aattgcggtt tgatgaagag atccatcaac
     3241 aaagttgtct acttctacgg atgctgcgat tgaacccagc atgataacca tgatgtagat
     3301 tttctttagt ctctggattt ctacttcttt tggaattaga gccggcatct gtgccatttt
     3361 agtcatcaat acttcatgga tcttttataa taacttgaag atatagaaat tataaaataa
     3421 aatataaaat ttgtaagaga agcaccatac tatgataatt attaccatgt tatcaagaaa
     3481 atatcgttag aaatgcacca attgaatgat aatcattata gataatcatt aatgataa
//
LOCUS       DASUMD010000200        11842 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1176731, whole genome shotgun sequence.
ACCESSION   DASUMD010000200 DASUMD010000000
VERSION     DASUMD010000200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 11842)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11842)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11842
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1176731"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..439)
                     /locus_tag="VFX26_05425"
     CDS             complement(<1..439)
                     /locus_tag="VFX26_05425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573951.1"
                     /translation="MIGTLKLGLIAVVFLLFYPMVAINGQSIVHDVIKTKNSEGFVVD
                     YNASNAYRRQPMVYNFSESIPTNWQLTIQNNLSYSGIGDAKSVVKIQEPAPSEKFIEL
                     AMFSEKTGKFWVAINTNESGYIRVYERDQDGWSRDQPIFVAHAN"
     gene            complement(442..1581)
                     /gene="sat"
                     /locus_tag="VFX26_05430"
     CDS             complement(442..1581)
                     /gene="sat"
                     /locus_tag="VFX26_05430"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004781 - sulfate adenylyltransferase
                     (ATP) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HEX5573952.1"
                     /translation="MSHNLILPHGGKLINKYIEKNYDDLKTIEVSSDIRNDAENIATG
                     VFSPLEGFMNQEDFLNVLKEGRLSNSIPWTIPIILDTEKEVATKMKDLGDVVLCSDGQ
                     KFGRMHIDEIYGYNKDNIANAVYGTTDSDHPGVNRLVKMKEFLVGGKMEVFQMKEYDE
                     IQKFRMQPSETRSEITRRGWKTVVGFQTRNVPHVAHEMLQKAALNIYDGLFINPLIGK
                     KKIGDFTDGLIISTYESLIMNYFPKNRVLFSTIHTSMRYAGPREAIHHAIMRKNFGCT
                     HFIVGRDHAGVGNYYHPFAAQEIFNDYPELDIKPVIFPSFYFCKKCMSYANEKTCPHG
                     VDSKEELSGTMIRKMVNSGKTPEKHLMRPEISDLILKSEKPFVVE"
     gene            complement(1591..2343)
                     /locus_tag="VFX26_05435"
     CDS             complement(1591..2343)
                     /locus_tag="VFX26_05435"
                     /EC_number="1.8.4.8"
                     /inference="COORDINATES: protein motif:HMM:NF002537.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004604 - phosphoadenylyl-sulfate
                     reductase (thioredoxin) activity [Evidence IEA];
                     GO_process: GO:0019379 - sulfate assimilation,
                     phosphoadenylyl sulfate reduction by
                     phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoadenylyl-sulfate reductase"
                     /protein_id="HEX5573953.1"
                     /translation="MQTNHNEKKSQESLMREIKSIANELESKPAHEILKWGFKKYGDK
                     MVLGSSFGAEDVVLIDMMCNINRNLTRVFTLDTGRLNQETYNLIDKVRKKYDIKVDVY
                     FPNASDVEEMVANKGMNLMYESMENRKLCCNLRKIEPLKRALKQFDCWITGLRREQST
                     TRNKILKIEVDTLNNNITKLNPLADWTNDEIWKYIRKNKVPYNELHDRGYPSIGCEPC
                     TRAIKEGEDPRAGRWWWENDTHKECGLHWKEG"
     gene            2501..3865
                     /locus_tag="VFX26_05440"
     CDS             2501..3865
                     /locus_tag="VFX26_05440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573954.1"
                     /translation="MTHDFWQNIFKYQNLGFDPIGWISNCSNEVDFFSLEKSFEKIKN
                     NSWADLSWFDSFQYSGKTPDITRRIHNVNESISEDLKNKKIISLMRIHNEVAEDEQSL
                     SHLMGNFYGKKPPKHQLRRVVLSTTSQYESQFGLVDYIDTHRGNKIGYTAVNISSGKL
                     IDPEEEPDSMINTSIALASALENLLLLGCTSGFRIIPIYDAPDEGLLDRIRTNNDKFA
                     AKYDLLLDDYSSLKLGKLFYGSTAYAHSTKELPVRYDLIQPGMVLILTDKFGSLTPFS
                     IYTIKQIGEMNSILGKHEPIDISIKNEIIKSLTQPRFSMGKIISKYCTDFGKEVDTNG
                     NIISVYPVGSDGILALINLSKISNSHIVVNEVPIKHEDLARFATDEFLVSNSTAAVNG
                     CHLIISSEDLAPLILEDLKKHNFNPHIIGFINDKERPMVTINNNINKYVAAKHITSLF
                     NIST"
     gene            3934..4383
                     /locus_tag="VFX26_05445"
     CDS             3934..4383
                     /locus_tag="VFX26_05445"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF023395.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HEX5573955.1"
                     /translation="MSTSTIDNCIFCRIAQKKIDVKIIDENENAIAFLDAFPLTAGHT
                     LVITKNHYAKLQDVKFDQINQLFSLANKILPSIEKGTGVQSTLIAIHNGKDAGQEIPH
                     LHVHIVPRKLGDGGGSIHSMFDSSHRLEESEMIKVFKNIKEQLESGH"
     gene            complement(4397..5092)
                     /locus_tag="VFX26_05450"
     CDS             complement(4397..5092)
                     /locus_tag="VFX26_05450"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF024811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEX5573956.1"
                     /translation="MLKFIFLVGRTLIDEQNFYSFIDSRLLYLLNQFGAKIDSRNYDA
                     IKNDIIKNRKLPKDGVEELVIQICKVLMPKGYEKIILKYILPSIEFAEKHLLYPSDDA
                     IATLEFLSKNYRIGIIGSHENKISKILKIYEMNKYFNCCILSYEEDIEPDKEIFSLIL
                     NMLRKTSGESLLIGDRLDTHIHIANSLGIITIRLTKSIFKVQEATNQNEIPTFTVNNL
                     RELANAGFTMNEI"
     gene            complement(5162..5542)
                     /locus_tag="VFX26_05455"
     CDS             complement(5162..5542)
                     /locus_tag="VFX26_05455"
                     /inference="COORDINATES: protein motif:HMM:NF014665.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0016653 - oxidoreductase activity, acting
                     on NAD(P)H, heme protein as acceptor [Evidence IEA];
                     GO_process: GO:0006784 - heme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="COX15/CtaA family protein"
                     /protein_id="HEX5573957.1"
                     /translation="MLIGVYISSLNRGVACPDWPLCPNGFAFPPEKFFYEHFHRLVAI
                     VAAIFTVISFIFIRKSFWKLNKLVVIIVTSLIIVQIIMGIFVVSSKLNPIIVAIHLST
                     AVTIFSLIFVLLRESYIEIKRKNV"
     gene            6012..6779
                     /locus_tag="VFX26_05460"
     CDS             6012..6779
                     /locus_tag="VFX26_05460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573958.1"
                     /translation="MNINEFISTLPTSVLKGNNVRLPDNVIRRMFKLARLGKKDIFYD
                     LGCGNSNAVYIASTEFKVKKAIGVEKRKNSVTKLLEKTHVLENTNVIIDDIRRVDISE
                     GNVFLFWFHDEKVVRKMVEKFSTELKDGSRIISIWSPPDLVVPYKTDFPFFVSRTPFK
                     FAKNIEEQIKAIYGQKCLDFTAAWLLGDKYLESLEVVPAQYKRFLNILYAMIIWINAW
                     NMKVSCEDEIPPPVESYLGILQTFFNIDLTSLIEYEN"
     gene            complement(6822..7787)
                     /locus_tag="VFX26_05465"
     CDS             complement(6822..7787)
                     /locus_tag="VFX26_05465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046873 - metal ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEX5573959.1"
                     /translation="MTNIENSDQLESITNKNLIWIDIQKPTRKKLKMLEGKYAFHELN
                     IEDCLSKIQIPKIDKYQDHIFVIMHFPTVDKDMSIPRSTQLAIFAGPNYLITVQQGEL
                     KPILEMFNLCKDNERQKETFMGSSSGYLLHSIIDLMVDDLLHVLMKLEGNLDDIEDLV
                     FDEKVAVARDISLLRREITTLRRVVVPMRRIILELSKEMQRFSEEDLTDYYDDVKDHT
                     EKVLEVLEESKETIEIFKDTDFMLSTEKSNKILATLTILFTLSIPATIIGAYYGMNVN
                     LPGGIVTGNADFFGPYTSFIVLLIIAIVPSLVMVWYFKRLGWFGW"
     gene            7904..8212
                     /locus_tag="VFX26_05470"
     CDS             7904..8212
                     /locus_tag="VFX26_05470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HEX5573960.1"
                     /translation="MTKVVVGKTSDVQEGKMVHITAGGKEIVVTKLDGNYYAMDNICT
                     HAGAELHEGELNNSELTCPWHGAKWDIKTGSLISFPQKLKPLQSRKVLIENDTLYVEM
                     "
     gene            8680..9870
                     /gene="mpgS"
                     /locus_tag="VFX26_05475"
     CDS             8680..9870
                     /gene="mpgS"
                     /locus_tag="VFX26_05475"
                     /EC_number="2.4.1.217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050504 - mannosyl-3-phosphoglycerate
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mannosyl-3-phosphoglycerate synthase"
                     /protein_id="HEX5573961.1"
                     /translation="MKLDVPRFTERFGSVSLHGVQRVYELDSGHKNKHAKTESEVIRS
                     IDDEIISGIESAMAIVIPIKGERLKLLEGVLSGIPHDCLTIIVSNSPRDPIDRYKLEK
                     QAFEQFNRFAEKKSVIIHQKDPGLAKALEEVGYTDLFDSESKIRNGKGEGMFIGMLLS
                     KMMGKKYVGFVDSDNYVPGAVNEYTKIFSSGIALASTPYTMVRVSWIYKPKISESGVR
                     FSKLGRVSEMTNQFLNLMISYYTGFETEVIRTGNSGEHCMSIQLAELLTYSSGFSIEP
                     YEIVNLLEQFGGITPPEHKDTMEKGVEVMQIETRNPHFHEEKGDLHIKEMFSQGWGSI
                     FHSKLCHPELREKLKAELISRGILDKVKEPPQLPKMRPFKDIDILKFENILKEQTNSL
                     TIFE"
     gene            complement(9937..10662)
                     /locus_tag="VFX26_05480"
     CDS             complement(9937..10662)
                     /locus_tag="VFX26_05480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573962.1"
                     /translation="MSSNQSLSDTAKLYNLATAVIFLIVVSLVAIGYGSYLILRSESL
                     KPEPKKSYLGYISKILTNKTYWRIFVVSSVVYGIFFGFLSQILIYHDDVAGDTAPSLF
                     VTLCCNYPGYVPMVTIELTELFSILVIPLNLILAISVSVLVGFNFALIMSLLRMFRNQ
                     SQSKFPIVSTFGVFSGLFIGCPTCAGSLFTALVGFSTSAVVSALAPFQSLFIAISIPI
                     LVGTPLLIIRKAMKNETCDVIGN"
     gene            10875..11300
                     /locus_tag="VFX26_05485"
     CDS             10875..11300
                     /locus_tag="VFX26_05485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional nuclease domain-containing protein"
                     /protein_id="HEX5573963.1"
                     /translation="MDETFTSEGFVTASISFVGFVDKLGLEGLLTLKSDDGREFPIRA
                     FSGEVARHILRFREGDKSTIPTIYNLIEEISSMQDLLLVEVRIYRNGPVLRSNLYFKT
                     RKEIITLRNYRASDSIALAVFFDVPIKVRKNLFEETIEQ"
     gene            complement(11311..>11842)
                     /locus_tag="VFX26_05490"
     CDS             complement(11311..>11842)
                     /locus_tag="VFX26_05490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016879 - ligase activity, forming
                     carbon-nitrogen bonds [Evidence IEA];
                     GO_process: GO:0006188 - IMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1297 domain-containing protein"
                     /protein_id="HEX5573964.1"
                     /translation="EKVITKEDLELSVIEEFVVGTYFNFNFFSSPLTPETEFLGIERR
                     LQTNLNDLNALPAKQQLEFDTEVKHIEIGHTPASIRESMLEKVFELGDKFTNAVKIEY
                     PPGIIGPFSLQSIVTPELEIIVYDVSLRVPGNPIMATTSPYTKYSYGQTFGIGRRIAM
                     EVKKAIASNKLSTIVT"
BASE COUNT         3925 a         2032 c         2034 g         3851 t
ORIGIN      
        1 tatttgcgtg tgctacgaaa attggttgat ccctagacca tccgtcctga tcacgctcat
       61 atactctaat ataccccgat tcgttagtat tgatggccac ccaaaatttt ccagtttttt
      121 cgctaaacat tgcaagttct atgaattttt cgcttggcgc aggttcttga atctttacta
      181 ctgatttggc atcccctata cctgaatagg acaaattatt ttgaattgtc aattgccagt
      241 tggttggtat agattctgaa aaattataga ccattggctg tcttctataa gcattagatg
      301 cattataatc cacaacaaat ccttccgaat tcttagtctt aattacgtca tgaactatac
      361 tctgtccatt aattgcaacc ataggataaa ataataagaa tactactgca attagtccaa
      421 gtttcagtgt tccgatcaag gttattcaac tacaaatggt ttttctgatt taagaattaa
      481 atcagatatt tcaggacgca ttaaatgttt ttctggtgtt ttacctgaat ttaccatttt
      541 tctaatcatg gttccgctca attcttcttt tgaatctact ccatgcggac aagtcttttc
      601 gttagcgtaa gacatacact tcttgcaaaa ataaaaagat ggaaagataa cgggtttgat
      661 atccaattca gggtaatcgt tgaatatttc ttgtgctgca aatgggtgat aataattgcc
      721 cacgcctgca tgatccctac ctactatgaa atgagtacat ccaaaattct tccgcataat
      781 cgcatgatgg atagcttcgc gtggacccgc atatcgcatt gatgtgtgga ttgttgaaaa
      841 caatacccta ttttttggga aataattcat gattagcgac tcgtacgtac ttattattag
      901 accatcagta aaatcaccta tctttttttt ccctattaga ggattgataa acaatccgtc
      961 gtatatgttc aaagcagcct tttgtaacat ttcgtgagca acgtgaggta cgtttcttgt
     1021 ttgaaatcct acaacagtct tccaacctct cctcgtgatc tctgagcggg tttctgatgg
     1081 ttgcatccta aacttttgga tttcatcata ttctttcatt tgaaaaactt ccatttttcc
     1141 gcccacaagg aattccttca ttttaactag tcggttcaca ccaggatgat cagaatcggt
     1201 ggtaccgtac actgcatttg cgatattatc tttattgtat ccgtagattt catctatatg
     1261 cattctacca aatttttggc catcagaaca aagaactacg tcccctaggt ccttcatttt
     1321 tgttgcaacc tccttttctg tgtcaagaat aattgggatg gtccatggaa tactgttact
     1381 caatcgtcct tccttaagca catttagaaa atcttcttga ttcataaaac cctcaagagg
     1441 gctgaaaaca cctgtagcta tattttcagc atcgtttcta atgtcagaag atacttcgat
     1501 agtcttcaaa tcatcataat tcttttcaat gtatttattt attaatttac caccatgtgg
     1561 taaaattaga ttatgtgaca ttagcaatta ttaaccttct ttccaatgca gaccgcattc
     1621 tttgtgagta tcattttccc accaccatct tccagctcta ggatcctcgc cttccttgat
     1681 tgctctcgta caaggttcac aaccaatact tggataacct cgatcgtgta gttcattata
     1741 tggaacttta ttcttacgaa tatacttcca aatttcatca ttagtccagt cagccagtgg
     1801 atttagttta gtaatattgt tgttcaaggt gtcaacttct atcttcaata tcttgtttct
     1861 agttgtggat tgttctcggc gaagcccagt aatccagcaa tcgaattgtt tgagagctct
     1921 tttcaacggt tcaatctttc taaggttgca acaaagtttc ctgttttcca tactttcata
     1981 cattaaattc attcccttgt ttgcgaccat ctcttcaaca tcgcttgcat ttggaaaata
     2041 cacgtcgact ttaatatcat acttttttct taccttatca ataagattat aagtttcctg
     2101 gttaagtcta ccagtgtcca aggtaaatac tctagtaaga tttctgttga tattgcacat
     2161 catatcaatc aatacaacat cttcagcacc aaagcttgat cccagtacca ttttatcccc
     2221 atatttctta aatccccatt ttagtatctc atgggcaggt tttgattcta gttcattcgc
     2281 gatgctcttt atttccctca tcaaagactc ctgtgacttt ttttcattat gatttgtctg
     2341 cattatttct attttgagga aattaggctt ataattatat tctttttatc ggtttaacat
     2401 aataaagata actaacttaa atatagttga ggagtttttt atggatcagg aagattcatt
     2461 attagtgttg tatatgagtg gtgtgtgggg gctttagttt ttgactcatg atttttggca
     2521 gaatatattc aaatatcaga atctaggatt tgatccaatc ggttggatat caaattgctc
     2581 taacgaagtt gatttttttt ctctagagaa atcttttgaa aagataaaaa ataattcttg
     2641 ggccgatttg tcgtggtttg attcatttca atatagcgga aagactcccg acataacacg
     2701 caggatacac aatgtaaatg aatcaatatc ggaggatttg aaaaacaaga aaatcatttc
     2761 attaatgaga attcataatg aagtagcaga agatgagcaa agtctatccc atctgatggg
     2821 taatttttat ggtaaaaaac ctcctaagca tcaattaaga agagtagtac tttctaccac
     2881 atcgcaatat gaatcacaat ttggacttgt tgactacatt gacacgcata gaggaaataa
     2941 gataggatat actgctgtca atatttcgtc gggtaaatta attgatcctg aggaggaacc
     3001 agattcaatg attaatactt caatcgcctt ggcctcggcc ctcgaaaatt tgctgttgct
     3061 tggatgtact tcaggtttta gaataatacc aatctatgac gcaccagatg agggcctact
     3121 ggacaggata agaactaaca atgataagtt tgcggcaaaa tatgatctgt tgcttgatga
     3181 ttatagttct ctcaagttag gaaaactttt ctatggttca acagcttatg ctcactctac
     3241 caaggaatta ccagtaagat atgatctcat tcaaccaggc atggttttga tattgactga
     3301 caaatttggc tcgttaactc catttagtat ttatacgata aaacagattg gtgaaatgaa
     3361 ttccattctg ggtaaacatg aaccaatcga tatcagcatc aagaatgaaa taataaaatc
     3421 gttaactcag cccagatttt caatgggcaa gataatttcg aaatattgta ctgactttgg
     3481 aaaagaggtt gatacaaacg ggaacattat tagcgtatat ccagttggtt cagatgggat
     3541 tttggcatta atcaatttat ccaaaatttc aaatagtcac atagtagtaa atgaagtacc
     3601 tataaaacat gaagatttag cgagatttgc gacagatgaa ttccttgttt caaattcaac
     3661 tgcggcagta aatggatgtc accttataat atcaagcgaa gatctagcac cactaatttt
     3721 ggaggacttg aagaagcaca acttcaatcc gcatataatt ggatttataa atgataagga
     3781 acgaccgatg gttaccatta ataataatat aaataagtat gttgcagcaa agcacatcac
     3841 atcacttttc aatatttcaa cttaggtgac attatcaaga gaattaattc aaatttggaa
     3901 atattttatt aattgataat gctgtagaat agtatgagta caagtactat tgacaattgc
     3961 atattctgca ggattgctca aaagaaaatt gatgttaaga taatagatga aaatgaaaat
     4021 gcaattgctt ttcttgatgc ctttccgttg actgcgggtc acactttggt tattacaaaa
     4081 aaccactatg caaagttaca agatgttaaa tttgatcaaa ttaaccaatt atttagtttg
     4141 gcaaataaga tattaccctc catagaaaaa ggaacgggtg tacaaagtac cctaatagct
     4201 atccacaatg gtaaagatgc aggacaagag ataccacact tacatgtaca catagttcca
     4261 cggaaactcg gtgatggagg aggttcgatt cattctatgt ttgattcaag ccatagacta
     4321 gaagaaagtg aaatgattaa agtattcaaa aacataaaag aacaattaga gagtggccat
     4381 tagaccaact tacggattag atttcgttca ttgtgaaacc tgcattggct agttccctca
     4441 aattatttac tgtgaatgtt ggaatctcat tttggtttgt ggcctcttgt accttgaata
     4501 tggatttggt aagtcgaatc gtaattattc ccaaagaatt tgcaatatga atatgagtgt
     4561 caagtctatc tccgataagt aatgattcgc ctgatgtctt tctcaacata ttcagaatca
     4621 aactaaaaat ttctttgtca ggctctatat cttcttcgta agataaaata caacaattaa
     4681 agtacttgtt catttcatag attttcaaaa tttttgatat tttattctcg tggctgccaa
     4741 ttatccctat cctataattt ttggaaagga attctagcgt cgctattgca tcgtcggatg
     4801 gatataaaag gtgcttctct gcaaattcta ttgacgggag aatatatttc aaaattatct
     4861 tttcataccc tttaggcatc aataccttac atatttgaat aactaattct tcaaccccat
     4921 cttttggcaa ttttctattc tttatgatat cattcttgat tgcatcataa tttctactat
     4981 caatcttagc tccaaattga tttaataagt agagtaatct agaatcaata aatgaataga
     5041 aattttgctc gtctatcaat gttcttccaa caaggaatat gaattttaac atcaaacatc
     5101 attatgattt aaaattacca tcataatttt gatcacacaa atacatcatc gttcattaat
     5161 tctagacatt ttttctctta atttctatat atgattccct gagtagaaca aaaataagcg
     5221 aaaatatcgt tactgctgtt gagagatgaa ttgcaactat aataggattc aacttacttg
     5281 atacaacaaa aatccccata attatttgaa caataatcag ggaggtaaca attataacaa
     5341 ctaatttatt cagcttccaa aagctttttc taataaaaat aaaagatatg actgtgaaga
     5401 tagcagcaac tatagccacg agcctatgaa agtgttcgta gaaaaatttt tctggaggaa
     5461 acgcaaatcc gttgggacat agaggccaat ctggacatgc tactcccctg ttcagtgaag
     5521 agatatagac gcctataagc atagtagcat aaattagact taaagatata aatggcaata
     5581 ttaagttcaa aaattttgta tttttcattt tcatttagtt attggtgtat caggttctat
     5641 ttactaaatc gcaggataat gaatcattag aaaataattc atggagttta tgcaaatttg
     5701 aggaaaaacc attcataaca attcttcgtc tatcttctca attttatcga tataactagt
     5761 acatctgcat cccattatca gacatctacc tacatcgaat aaggggtatt gtctgtcctt
     5821 attcccttca agttcatgtg ctatgtatat atgaccacaa taatcacagt tcacaaataa
     5881 taatatccga gcgtccatta ttaactttat caaccatttc agtgaaattt cttgatagat
     5941 tgagagatgt gttatctcag ttccatttta tatattatgt cggaaatcta atatccaata
     6001 cacgatatac aatgaatatt aatgaattca tttctacact gccaacttcg gttcttaaag
     6061 gcaacaatgt tagattgcca gataatgtca taagaagaat gttcaaactt gcccgacttg
     6121 gtaagaaaga tattttttac gatcttggtt gcggaaatag taatgcagta tacattgcat
     6181 caactgaatt taaagtaaag aaggccatag gtgttgaaaa aagaaaaaac tcagtcacaa
     6241 aattattgga aaaaacccat gtattagaaa acacgaatgt aataattgac gacataagaa
     6301 gagtggatat ctctgaaggt aatgtgttcc ttttttggtt tcatgatgaa aaggtcgtaa
     6361 ggaaaatggt ggaaaaattt tctaccgagt taaaagatgg cagtagaata atttcgatct
     6421 ggtctccacc agatttggtt gtgccgtata aaactgattt tccttttttt gtgtcccgta
     6481 caccgtttaa gttcgcaaag aatattgaag aacaaataaa ggctatctac ggtcaaaagt
     6541 gtctagattt cacagcagcc tggttactag gagacaaata tttggaaagt cttgaggttg
     6601 taccagctca gtataagcga tttctcaata tcttatatgc aatgataatc tggattaacg
     6661 cgtggaatat gaaagtatca tgtgaagatg aaattccacc tccagttgaa tcatatcttg
     6721 gtattcttca aacgttcttc aacatagact taacgtcatt aattgaatat gaaaattaag
     6781 taaaactgaa actcgtagtc cttagtcgta taaataattt tctaccaccc aaaccatccc
     6841 aatctcttaa aataccaaac cattactaat gaaggtacta tggcgattat tagtaagact
     6901 atgaatgaag tatacgggcc aaaaaaatct gcattgccag tgacaatacc accaggcaaa
     6961 ttgacattca ttccataata agctccgatt atcgttgcag gaatagaaag tgtaaagagg
     7021 atagtaagtg ttgccaaaat cttatttgat ttttcagtac tcaacatgaa atcagtatct
     7081 ttgaaaattt ctatagtttc cttagattct tcaagaactt caagaacctt ttctgtatgg
     7141 tccttcacat catcataata gtcagtcaaa tcttcttcag aaaatctttg catctctttg
     7201 ctcaattcca agataattct cctcattgga acaactactc gtctaagggt tgttatctct
     7261 cttcgtaata gagaaatatc tcttgcgact gcaactttct catcaaatac caaatcttct
     7321 atgtcatcca ggtttccttc aagtttcatt aaaacatgta acaaatcatc aaccattagg
     7381 tctattatgc tatgtaatag gtagcccgat gatgacccca tgaacgtctc cttttgtctt
     7441 tcattatcct tacaaagatt gaacatttca aggattggtt tcaattcccc ttgttgtaca
     7501 gtaataagat aattaggtcc agcaaatatt gcaagctgag ttgatcgcgg gatactcata
     7561 tccttgtcca cagttggaaa atgcataatt acgaaaatgt gatcctgata tttgtcaatt
     7621 ttaggtattt gtatttttga aagacaatcc tcaatattta gttcgtggaa tgcatatttt
     7681 ccctccaaca tttttaattt ttttctggtg ggtttttgga tatctatcca gatcagattc
     7741 ttattagtga tagattcaag ttgatcagaa ttttcaatat ttgtcatctg gcctcattct
     7801 tgattatctt taaaaagttg aaatattcta tattaagata tctaaatatt ctacaaataa
     7861 taagaaaatt aagttaaaat aatacagaat tatttttatg atcatgacaa aggtagttgt
     7921 tggaaaaacc tcagatgtcc aagaaggaaa gatggtgcat attacagcag gtggaaagga
     7981 aatagtagta acaaaattgg atggaaatta ttatgcaatg gacaatatct gcactcatgc
     8041 gggggcagag cttcatgagg gagaattgaa taatagtgaa ttgacttgtc cttggcatgg
     8101 agcaaaatgg gatattaaaa caggaagttt gatctcgttt ccccaaaaat taaaaccatt
     8161 gcagagtcgc aaagttttga tagaaaatga tacattgtac gtagaaatgt agattcgaaa
     8221 caaatcctga tacatttatg acactgttat tgtagggata aattaagagt aattgtatca
     8281 gataatagca actttaatta atactatact ttactaaatt aaggtacagt aatgcgaacc
     8341 atttcatgcg ctaagtaaat ggcagtttga taaaaacatt agcatcacga ctgatattgt
     8401 ctgcgtccgc cgtctcccga caaaaattat gtagaaaaac ttacgcatac aagatcttta
     8461 acactagaga cttgacatta cggcagttgg taattgcacc atcaacttat aatggcaata
     8521 tgggacaatc taacagatat gatcgttact cttggtttcc taaataatcc agacggcatg
     8581 aaaatcttgg aaaagttgat atcattgttt ttggtttttg acaaaaaatt attgatttat
     8641 atacacttgc aataaatatg gcataactga attaaagata tgaagcttga tgtccctaga
     8701 tttacagaaa gatttggatc agtaagttta catggagtgc aacgtgtcta cgagctagat
     8761 tctggacaca agaacaaaca tgcaaagacc gagtctgaag ttatacgttc tattgatgat
     8821 gaaattattt ctggtataga atcagcaatg gcgattgtaa ttcctataaa aggagaacgt
     8881 ttaaagcttt tagaaggagt actgagtggt atccctcatg attgtttaac aataattgta
     8941 tcaaatagtc ccagggatcc aattgataga tataaattag aaaaacaggc ttttgaacaa
     9001 tttaatagat tcgcagaaaa aaaatctgtg ataattcatc aaaaggatcc aggtcttgct
     9061 aaggcattag aagaagttgg gtatacggat ctttttgact cggagagtaa aatacgtaat
     9121 ggtaaaggag agggcatgtt cattggcatg cttctttcaa aaatgatggg gaaaaaatat
     9181 gttggattcg ttgattctga caattatgtc ccgggtgctg taaacgaata cactaaaata
     9241 ttctcatccg ggattgcgtt agcatcaaca ccttacacta tggttcgtgt atcttggata
     9301 tacaaaccta agatttcaga atcaggtgta cgattttcta agttaggcag agtttcagaa
     9361 atgacaaatc aattcttgaa tttaatgata tcatattata ctggatttga aacagaagtt
     9421 atcagaacag gtaattctgg agaacactgc atgtcaattc agttagctga attgttgact
     9481 tattcgtctg gtttttcaat cgaaccgtat gagatagtta atttattgga acaatttggt
     9541 ggaattactc cgccagagca caaggatact atggagaaag gggtcgaagt tatgcaaatt
     9601 gaaacacgca atccacattt tcatgaagag aagggagatt tgcatataaa ggagatgttc
     9661 tctcagggtt ggggaagcat atttcatagt aagttatgtc atcctgaatt gcgggaaaaa
     9721 ttaaaggccg agttaatttc aaggggaatt ttagataaag taaaagagcc tccgcaatta
     9781 cccaaaatga gaccgttcaa agatatcgac attttgaaat ttgagaatat tttaaaggaa
     9841 caaaccaaca gccttacaat tttcgaataa tatttttcct tgatgcccct gaggtattat
     9901 aattagaatt tagacttacc ccatattgaa atcctattaa ttacctatta cgtcacaggt
     9961 ttcattcttc attgccttac gaataatcaa tagtggcgtt ccaaccaaaa ttggaatgct
    10021 aattgcaata aataagcttt gaaatggggc caacgcggaa actacggcgc tagtactaaa
    10081 tccgacaagc gctgtaaata ggcttcctgc acaagtagga caaccgatga ataatccact
    10141 gaaaacccca aaagttgaaa caattggaaa tttactttga gattggtttc tgaacattct
    10201 tagcaagctc ataattaatg caaagttaaa accaactaat actgagacgc ttattgcaag
    10261 aattaaattt aagggaatta ctaaaattga aaataattca gtcagttcta tagtgaccat
    10321 aggaacgtat cctggataat tacaacacag tgttacaaaa agagatggag cagtgtcccc
    10381 tgcaacgtca tcatgataaa ttaggatttg agataagaag ccaaagaaga taccatagac
    10441 aacagatgaa acaacaaata ttctccagta agtcttgttg gtcaaaatct ttgaaatgta
    10501 tccaagataa ctctttttag gttcgggttt caaagattca gagcggagga tcaaataaga
    10561 accatatcct atcgcaacca aggaaaccac aattaggaag ataaccgcag ttgccaagtt
    10621 atacaatttc gcagtgtcag acaatgattg attagaactc aacaatgaat acatggagag
    10681 agagaaaata atggaaaaaa cgctgattga aataatgcgt atacctctat ttctcagcga
    10741 attatgatta tccaacattg ccaacaacca aaagtaggtt gattatgaaa aacaatccaa
    10801 tctatattaa cttaattcaa tcaaacttgt cactaatgga taaagtctaa atttatcgat
    10861 gtataaaaaa aaatatggac gaaactttca caagtgaagg atttgttaca gcgtcgataa
    10921 gctttgttgg tttcgtagat aaacttggtc tagaagggtt acttacttta aaatccgatg
    10981 atggaagaga atttcctata cgcgcatttt cgggagaagt cgcaagacat attctgagat
    11041 ttagagaagg ggacaagagt accataccta cgatttataa ccttattgaa gaaatttcat
    11101 ccatgcagga tttactgtta gtagaagtac gaatttacag aaacggtcct gtattaaggt
    11161 ctaatcttta tttcaaaact cgcaaggaaa taatcacttt gagaaattat cgtgcgtcgg
    11221 attctatagc tctcgcggta ttttttgacg taccaataaa agtaaggaaa aatctctttg
    11281 aagaaacaat cgagcaatga cttgcctgaa tcaagtgact attgtggata gtttgtttga
    11341 ggctattgct ttcttaactt ccattgcaat cctccggcca ataccaaaag tttgaccgta
    11401 ggaatatttt gtatatggag aggttgttgc cattatagga ttcccaggaa ccctgagaga
    11461 aacatcatac acaattattt ctaactcagg ggtgacaatg ctctgtagag aaaatggtcc
    11521 tattattcct ggtggatatt caattttaac agcattagta aatttatcac caagttcaaa
    11581 tactttttcc agcatagact ctctgatgct tgcaggagta tgacctattt ctatatgttt
    11641 tacctctgta tcaaattcca gttgttgttt tgcaggtagc gcatttagat cattgagatt
    11701 agtctgcagt cttctttcaa ttcctaagaa ttcggtttca ggagttaggg gtgacgagaa
    11761 aaaattaaaa ttaaaatagg tacctacgac aaattcttca attacagaca gttccagatc
    11821 ttccttagtg atcacctttt ct
//
LOCUS       DASUMD010000201         4038 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1288215, whole genome shotgun sequence.
ACCESSION   DASUMD010000201 DASUMD010000000
VERSION     DASUMD010000201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4038)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4038)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4038
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1288215"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(2..78)
                     /locus_tag="VFX26_05495"
     tRNA            complement(2..78)
                     /locus_tag="VFX26_05495"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(42..44),aa:Ala,seq:ggc)
     gene            276..668
                     /locus_tag="VFX26_05500"
     CDS             276..668
                     /locus_tag="VFX26_05500"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEX5573965.1"
                     /translation="MRYNPTTPVKEPEFLILKNRRGSWGFPQGHKELGESELDTLIRE
                     VREETGIRFLDVMSFIGTIRYSYMKLNGIRSHKEVKFYFATTPTREIVISYEHASYRW
                     VSFLSALNILAHRQLKSILIKGHRTGLY"
     gene            790..2319
                     /locus_tag="VFX26_05505"
     CDS             790..2319
                     /locus_tag="VFX26_05505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEX5573966.1"
                     /translation="MTNYRGNFLYGFIACGPYELVPEFVFDKLFCPSVETDKNTGEVK
                     VAQCGLRRIESALLKEYQRDDIVIAHPEMLEKSIGPNTTVVGINVMDPLGMAPVTTTM
                     SPEKLSYVAMKFKKMCASVIQLKKKYGFKVVVGGNGSWELAKPDRMKIHGIDTVVIGE
                     ADELALDLFHDLEAGDAPELLHTFVRNIENIPPIQGPTVNSLVEAMRGCGRGCDFCDV
                     NKRSKKDIPLERLQAEASINLRYGFDSIWLQSDEMLLYGCDNKDFIPNADAITGLWKG
                     LKSTGANFIGTTHMTLSAVASSPNLIRDLSKINDMDSSGRWLATNLGVETVAPRMVKK
                     HLGVKTKPYQPDEWGAVVREGCRILNENHWFPALTLIIGWPDETPDETQYTIDLIDDF
                     KRMKISGLVAPLLYQDFSERNSMHFGNLNESQFALFWKCWQFNLRVINDIIPIIIRNK
                     TYGPAMKVFMAVLIKAGTWAIMRYLKGLSKQLFNGRVPEDIVEKYSRSRSVSESLSPK
                     L"
     gene            complement(2341..2682)
                     /locus_tag="VFX26_05510"
     CDS             complement(2341..2682)
                     /locus_tag="VFX26_05510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573967.1"
                     /translation="MKFEYEEFSTIEEFFLYLVSVAPYMKQVLPASSYKGYVFSILPL
                     TPVSGDILMMIYAKGNMEPGLIEFDISTKKYKTVPAVERADKNYFIILKPKIATIADT
                     AIKEIEGLGKN"
     gene            complement(2759..3601)
                     /locus_tag="VFX26_05515"
     CDS             complement(2759..3601)
                     /locus_tag="VFX26_05515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEX5573968.1"
                     /translation="MVVDNKGIISYIRVLKEDLMIFKIKPSESEVPDFKAGQFLTIGL
                     HVPSEGKIVRRAYSIASPPEQKNVFELLVRWVKKPVPGRLTTELFNRRELDEILWVKP
                     TGAFTIDEKKHDGSPDNRRMVLIGGGTGLAPFISYALHLKSIGSKREVVILHGASYVD
                     ELSYREILTELENESLDSGKDKWNFRYRASISRPQEWFNRSWNGQKGRVESFLRPKLG
                     TDKSPLEELVGESITPENTIFYVCGWQGTVDGALDYLIPKGFVTERNKKKDGSYGVKF
                     ESYG"
     gene            3739..4029
                     /locus_tag="VFX26_05520"
     CDS             3739..4029
                     /locus_tag="VFX26_05520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573969.1"
                     /translation="MFKFDNFRENESKSVEDIEKLINENSSEHQQLLESFKESMNTFA
                     TERSLDTCLQSLNVSIQLASIRSTLVELYKTYCHILEKEVIRLRKITQDKTQ"
BASE COUNT         1284 a          746 c          767 g         1241 t
ORIGIN      
        1 atggtggacc gagtgggatt cgaacccacg acctcagcaa tgccaatgcc gtatcctacc
       61 ggactagacg atcggcccat gatttcgact tagatttaca cattaatatc tttaggttaa
      121 ttatgttttt atgattccaa ccaatttgtc atgagaaagt aattcagaat ttgtatatac
      181 taaaatctaa gataaagaat cgataaaaat tataattagc tgcagtacta aagtaaagag
      241 gtagaatatt cctggaaacc tctattggtg ctgtaatacg atacaaccca acgactcctg
      301 ttaaagaacc tgaattttta atcctaaaga atagaagagg atcatggggt tttccacaag
      361 gacataaaga acttggagaa tcagaactag atacattgat tagagaagta agagaagaaa
      421 ctggaataag atttcttgat gtcatgtcat ttatcggaac aataagatat tcttatatga
      481 aattgaatgg cataagatcc cataaggaag tcaaattcta ttttgccacg actcctacca
      541 gagaaatagt aatttcttat gaacatgctt cttacagatg ggtttcattt ctttcagccc
      601 ttaatatttt ggctcataga cagctaaaat caattctaat aaaaggtcat cgaacaggct
      661 tgtattaaat aatcaatatt ggtaacagta tagtaataga tttataccca aatacgttaa
      721 cgaacttggg ggactagaga agagatgtca gatggtaaac gcgtagtgtt aacagcagac
      781 cgtagcctta tgacaaatta tagaggtaat tttctttatg gatttattgc ttgtggccca
      841 tatgagctcg taccagaatt tgtatttgac aagttatttt gtccaagcgt tgaaaccgac
      901 aaaaacacag gcgaagtaaa agttgctcaa tgtggactca gaaggatcga aagcgcatta
      961 ttaaaggagt atcaaagaga cgacattgta attgcacatc cggagatgct ggaaaaatcc
     1021 atagggccga acaccactgt ggttggaata aatgttatgg acccattggg tatggcacca
     1081 gtaacgacaa ctatgtcccc tgaaaagtta tcatatgttg ccatgaaatt taagaaaatg
     1141 tgcgcttcag tgattcaact caaaaagaaa tatggcttta aggttgttgt tggtggtaat
     1201 ggctcgtggg aacttgcaaa acctgataga atgaaaattc acggaattga tacagttgta
     1261 attggtgaag ctgatgagtt ggcattggat ctatttcatg atcttgaagc tggtgatgca
     1321 cctgagttac tccatacatt cgtaagaaat attgaaaaca ttcctccaat acaaggccct
     1381 acagtaaact cactggtaga ggctatgagg ggatgtggga gaggttgtga tttttgcgat
     1441 gtaaataaac gttcaaagaa agatatcccg ctggaaagac tacaggctga agctagtata
     1501 aacttgagat atggttttga ttctatttgg cttcaatctg atgagatgtt actatatggc
     1561 tgtgacaaca aggatttcat tccaaatgca gatgctatta ctggactttg gaagggtctg
     1621 aagtcaaccg gcgctaattt cataggtact actcatatga ctctatctgc tgtggcatct
     1681 tctccaaatc taattagaga tttatccaaa ataaatgaca tggattcaag tggaagatgg
     1741 cttgctacaa atctaggtgt agaaactgtt gcgccacgaa tggtcaaaaa acaccttgga
     1801 gtaaagacaa aaccatacca gcctgacgag tggggcgcgg tagtaagaga aggttgcagg
     1861 attttgaatg aaaatcattg gttccctgcc ttgactttaa tcattggctg gcctgatgaa
     1921 acaccagacg aaacacaata cacaattgac ttgatagatg actttaaacg aatgaaaata
     1981 agtggtcttg tagccccact attgtatcaa gatttttcag aaaggaattc gatgcatttt
     2041 gggaatttga acgaatctca atttgctttg ttttggaaat gctggcagtt taacctcagg
     2101 gttataaatg acattattcc gataattatt cgcaacaaga catatgggcc tgcaatgaaa
     2161 gtctttatgg ccgttttgat aaaggcaggt acttgggcaa taatgagata cctgaagggt
     2221 ttgtcaaaac aattattcaa tggccgtgta cctgaagata tcgtagagaa atactccaga
     2281 agtagatcgg tatctgaatc cctctctcca aaattataag attaaagttt atttttatct
     2341 ttagttctta ccaagacctt cgatttcttt aattgcagta tctgcaatcg ttgcaatctt
     2401 tggtttcagt attatgaaat agttcttgtc agctctttct acggctggaa ccgttttgta
     2461 tttctttgtt gaaatatcaa attcgattag tcctggttcc atattcccct tggcataaat
     2521 catcatcagt atgtctccag acacaggggt cagtggtaga atggaaaata catatccttt
     2581 gtatgaacta gcaggcagaa cttgcttcat gtacggcgca acggatacaa gatataaaaa
     2641 aaattcttca atagtggaaa attcttcata ttcaaatttc atatctactt atggtcacat
     2701 ttatccttga tataaggtta aggtttcttg gactgtatga caccgcattt tccagaacct
     2761 atccataaga ctcaaacttc acgccataac ttccatcttt tttcttattt ctttccgtaa
     2821 cgaatccttt tggaatcaga tagtccaaag caccgtcaac tgttccttgc catccacaca
     2881 catagaaaat agtattttca ggggtaattg attctccaac aagctcttcc agaggagatt
     2941 tatcagttcc tagttttggt cttaaaaatg attctaccct ccctttctga ccattccaac
     3001 ttctgttgaa ccattcctga ggtctactaa tacttgcacg atatctaaaa ttccatttat
     3061 cttttccact atccaaactt tcattctcaa gttctgttag aatctctctg taactgagct
     3121 catcaacata acttgcacca tgtaagatta caacctctcg cttgctgcca attgatttta
     3181 aatgaagagc ataggaaata aatggggcta gtccagttcc tccaccaatt aggaccatcc
     3241 ttctgttgtc aggagaacca tcatgtttct tttcgtctat tgtaaacgct cctgttggct
     3301 ttacccaaag tatttcatcg agttctcttc tgttgaataa ttcagtagtc aatcgtcctg
     3361 gtacaggctt ttttacccat ctcacaagca actcaaagac atttttttgc tctggagggg
     3421 aggcaattga atatgccctt cttactatct ttccctcaga aggcacatgc aaacctattg
     3481 tcaagaattg acctgccttg aaatccggga cttcactttc cgatggcttt attttgaata
     3541 tcatcagatc ttccttcaat actcgtatat acgatatgat gcccttattg tctaccacca
     3601 tacaaatctg aactcgagcc ggcaaataaa tacattatta atttaatgat tgaaaggggg
     3661 cgattctcag gaaaatcttg ctattttgac ggaataccaa tgagcttaat atatttctga
     3721 gtgtcaatat gagtgagtat gttcaagttt gacaattttc gtgaaaatga atctaaaagt
     3781 gtggaggaca ttgagaaact aattaatgag aatagttctg agcatcaaca attgcttgaa
     3841 tcattcaaag aatcaatgaa tacgttcgca acagaacgct cgttagacac ctgcttacag
     3901 tctctcaatg tttcaatcca gctagccagc ataagatcca cattagtgga attatacaag
     3961 acttactgcc atattttgga aaaagaagta atcagattaa gaaagattac ccaagataaa
     4021 acgcagtaat ttggtttc
//
LOCUS       DASUMD010000202         2876 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_845976, whole genome shotgun sequence.
ACCESSION   DASUMD010000202 DASUMD010000000
VERSION     DASUMD010000202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2876)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2876)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2876
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_845976"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(2..1003)
                     /locus_tag="VFX26_05525"
     CDS             complement(2..1003)
                     /locus_tag="VFX26_05525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEX5573970.1"
                     /translation="MQLDQQCIDPLDKQLLNDIQWTFPLSDRPYLEIAAKHGLSEEDV
                     MRRISLMKRSGLIRQINAIFDTRKLGYKSALVAFAVEKKKLDSVAQEVNKHPGVSHNY
                     ERDHEFNMWFTLAVPPDGDLKKDLEQMASLEGVIKFRLLPTLKLYKIGVKLDMVNNDP
                     RKLTPDDSIKKLDQKKFELTSRDKQFIRELQKDLDVSTRPFDNSAKNLGITLAELFKK
                     AAEYESIGVMRRFAAILRHRDAGFTANGMIVWKVSDDKIDEVGYKLASFPQVSHCYRR
                     PVYPDWPFSLFSMIHARTVEAANKIAVELSNFVGINEYRILFSSREFKKERVKYFVD"
     gene            1150..1974
                     /gene="pheA"
                     /locus_tag="VFX26_05530"
     CDS             1150..1974
                     /gene="pheA"
                     /locus_tag="VFX26_05530"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004664 - prephenate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0009094 - L-phenylalanine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HEX5573971.1"
                     /translation="MKGKKIAFQGEHGAYSEIAATKFFPDSDLIPMKLFQDIFDALRN
                     DSIDCAVVPIENSIEGSVNEIYDLLLDTDKKISGEIFLRINHCLIALPNSTTNTLMKV
                     LSHPQALAQCKNYIKKKKLDAIPAYDTAGSVRLIKEKKILDTAAIASKKAAEFYDMKI
                     FDQNIEDRRNNFTRFLVLSNQKTTPTKTDRTSMIFGVAHTPGSLYSVMQEFNNNKINL
                     TKIESRPTKEKPWEYNFYVDFEGHIEEANVKTTLANIEKKCTFIKILGSYQRGTIK"
     gene            complement(1987..2439)
                     /locus_tag="VFX26_05535"
     CDS             complement(1987..2439)
                     /locus_tag="VFX26_05535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573972.1"
                     /translation="MSRKKTFYILMISGIAFIIIGAASMIDSNTPRKVAIDSTLEANL
                     TDVITPIMNNGSMGKIIIDGSRFNFKIEDPGKSVIVSVSNKTHYQYDLVANYEGEYRF
                     ETKNIGDTVLNIDGEVETKAPPLAIGGQMMLLITGIIVLGIGMKAKFA"
     gene            2626..>2876
                     /locus_tag="VFX26_05540"
     CDS             2626..>2876
                     /locus_tag="VFX26_05540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573973.1"
                     /translation="MHSVESLNIPILLGIVIALGAFFLVDTNSPIHALDKEGLIMYDY
                     DDLTEFADAIKDGDKEIQEIPLKSMESSNIFGTSAPDTDT"
BASE COUNT          939 a          532 c          468 g          937 t
ORIGIN      
        1 gttagtccac gaagtacttg accctttctt ttttgaactc cctagaacta aagagaatcc
       61 tatattcatt aataccgaca aaattcgata gttcgacggc tatcttattg gcagcttcaa
      121 ctgttctcgc atgaatcatg ctgaacaaac taaatggcca atcaggatat accggccttc
      181 tataacaatg acttacttgt ggaaatgatg ctaatttgta cccaacttca tcaatcttat
      241 catctgatac tttccaaaca atcatgccat tggcagtaaa tccggcatct ctgtgacgta
      301 ggattgctgc aaatcgtctc attactccaa tcgattcgta ttctgcagct ttcttgaata
      361 attcagctaa ggtgattcca agattctttg cagaattatc gaatggtctt gttgatacgt
      421 ctaaatcttt ttgtaattcc cttatgaatt gcttatctct tgatgtaagc tcaaattttt
      481 tttgatccaa cttttttata ctgtcgtctg gcgtcaattt tctaggatca ttatttacca
      541 tgtccagttt cactcctatt ttatataact tgagagttgg caaaagacgg aacttaatta
      601 caccttcaag tgatgccatt tgttcaagat cttttttcaa atctccatca ggaggaacgg
      661 ctaacgtaaa ccacatattg aattcatgat ccctttcata attgtgactt accccagggt
      721 gcttattgac ttcctgagct actgaatcaa gtttcttttt ttcaacggca aatgcaacta
      781 aagcgctttt gtaacccaat ttcctcgtat caaaaattgc gttgatctgt cttattagtc
      841 cacttcgttt cattaatgaa attcttctca tgacatcttc ttctgaaagt ccatgttttg
      901 ctgctatttc gagatatggt ctatctgata atgggaaagt ccattgaata tcattcaaaa
      961 gttgtttgtc taaaggatca atgcattgtt gatctagttg catttatctt aatttcaagt
     1021 gttaagcatt aaatactttt cataaagtga aataattaac acggttggaa atgcctaatt
     1081 ctgaagccga ttcttcgaga gtataacata aaaatatatg aattaacaca ttttagaata
     1141 acaaatactt tgaaagggaa aaaaatcgct ttccaagggg agcatggagc atacagcgag
     1201 attgctgcca caaaattttt tcccgattca gaccttattc caatgaagtt attccaagat
     1261 atttttgatg cgttacgaaa tgatagtatt gattgtgcgg tagttccaat tgaaaattca
     1321 attgaggggt ctgtcaatga aatttacgac ttgcttctgg atactgataa aaaaatcagc
     1381 ggggaaatat ttcttaggat taatcactgt ctgattgcat taccaaatag tactactaat
     1441 actctaatga aggtcctctc gcatcctcaa gccttagccc agtgtaaaaa ttatatcaag
     1501 aaaaaaaaac tagatgcgat acctgcatat gatacggctg gatcggttag actaataaaa
     1561 gaaaaaaaaa ttcttgacac tgcagcaatt gcaagcaaaa aggcggcaga attttatgat
     1621 atgaagattt ttgatcaaaa tatagaggac aggagaaaca atttcactag attcctggtg
     1681 ctatctaatc aaaaaactac acctactaaa actgatagaa cttcgatgat ttttggagta
     1741 gcgcacacgc caggatcgtt atattcagtg atgcaagaat ttaataataa taaaattaat
     1801 cttacaaaaa tcgagtcaag gccaactaaa gaaaaaccgt gggaatacaa cttttatgta
     1861 gattttgaag gtcacattga agaagccaat gttaaaacaa cgctggctaa tatcgaaaag
     1921 aaatgcacat ttattaagat acttggctcc tatcaaagag gaacaataaa gtagtcgtca
     1981 tttatttcat gcgaatttgg ctttcattcc aattcctaga actatgattc ctgttatgag
     2041 taacatcatc tgacccccaa tagccaacgg tggagcctta gtttctactt ctccatcaat
     2101 attaagtacg gtatccccaa tatttttagt ttcaaatcta tattccccct catagttagc
     2161 aaccaaatcg tattgataat gtgtcttatt agaaactgac acaataactg atttacccgg
     2221 atcttcaatt ttgaaattaa acctagatcc gtcaattatg atcttaccca tacttccatt
     2281 attcattatg ggtgtaataa cgtccgtcaa attcgcctcc aatgtactat ctatggccac
     2341 ttttctcgga gtatttgaat caatcattga agcggctcca attataataa atgcaatacc
     2401 acttatcatt agaatataga aagtcttttt ccttgacaat atcaaaaata aagaatatag
     2461 tattaattaa caatatgttt tctcatcaat aatattttgg ggagtatcaa atattacaaa
     2521 tctttgagga actacggtta acaggaggtt tagtgctgaa aagtatgata aggagcatgg
     2581 atcatatgac aaagatttat gtattgtgtt tttaaatttt aaactatgca cagcgtcgaa
     2641 tcactcaata ttcccattct attgggaata gttatagctc tcggcgcttt tttccttgtt
     2701 gacacaaaca gtccgataca tgcactcgat aaggaagggc taatcatgta tgattatgat
     2761 gatctcacag aatttgcaga tgccataaaa gatggtgata aagaaataca agaaattccc
     2821 ctgaaatcga tggaatcttc aaacattttt ggtacatcag ctcccgatac tgatac
//
LOCUS       DASUMD010000203         3990 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_737050, whole genome shotgun sequence.
ACCESSION   DASUMD010000203 DASUMD010000000
VERSION     DASUMD010000203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3990)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3990)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3990
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_737050"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1100)
                     /gene="truD"
                     /locus_tag="VFX26_05545"
     CDS             complement(<1..1100)
                     /gene="truD"
                     /locus_tag="VFX26_05545"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: protein motif:HMM:NF013322.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HEX5573974.1"
                     /translation="MNSAVPVIDKMAGIELYSTKFEGIGGSIKEKNEDFKVLELLTEL
                     ISKDISKIPDKSYRFPLLLLNKKGLDSNHAIIEIFNQLGTRIRVLGIKDAKAVTTQYA
                     TCEGSKYKEGTTKHTNLSLIGFTRNSIKKSHIMGNQFEIIITNPNRNDISEFITEITN
                     IPNYYGLQRFGSERLVTHLVGREIIKRNFKRAVEIFLCDTTEYDTQFSKEIREKFKDP
                     KNYGSVIKTIPKGMDLERNILLSLANGRDYIAALRSVPINIRRLFVHAYQAFLFNRCL
                     SNMIRDGESITSCIKNDFCFKLENQLTLGKLMKYLNDDGTEMVPAMHLPGYSFKSADG
                     RIERKLSHMLKEENISPKDFYVKEMQELSVEGG"
     gene            1617..2003
                     /gene="hsp14"
                     /locus_tag="VFX26_05550"
     CDS             1617..2003
                     /gene="hsp14"
                     /locus_tag="VFX26_05550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaeal heat shock protein Hsp14"
                     /protein_id="HEX5573975.1"
                     /translation="MGVSRYVAKEIMKEIGNRSREFYEFVLPPVDIYEDGTELVVIVD
                     LPGFQKKDIHVNISKDILTLRAKRVIDMDSHTIHFTQRPSKIEKKIPLPYSIPEDDNA
                     KTKADYANGVLKIRIPISNMTNVPIT"
     gene            2143..3165
                     /locus_tag="VFX26_05555"
     CDS             2143..3165
                     /locus_tag="VFX26_05555"
                     /inference="COORDINATES: protein motif:HMM:NF013832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573976.1"
                     /translation="MEANSILIMLMWLGELTLASWLLSYGAEHLATRFGARFVGRTLL
                     SVATTLPEIAIVAYAASAGSYGIALGAGLGSNVLMMTLGLAIMLIIATTRLSKKPIKK
                     IDVSSFKLDKIFLLLTALVSAILFIDGYHFIDGVVFTALFLAYVFVAFYEMKLEKKKD
                     KEKIIEEYSNASKSVNLPTNQKQLIKSGIIFMIGTIGIFLGAEPFIKSLEHVSVEIGV
                     SAIILSVVISPIAGEMPEKISLMLLARKGAQGTSIAIANVLGSKILNNTLLLAFAVFG
                     AIYHSGLSASIDRTDILSQQMILATVVTFIAVGLLFRKEIGIRTGLVLLVMYIVSIGL
                     QFFMNS"
     gene            complement(3240..>3990)
                     /locus_tag="VFX26_05560"
     CDS             complement(3240..>3990)
                     /locus_tag="VFX26_05560"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEX5573977.1"
                     /translation="LSPLTLGNSSAVEVGDQVIAIGNPYGLAGSMSVGVVSQKGRLIS
                     TEGSQFSIPSVIQTDALINPGNSGGPLLSIGEEVIGMNTAGVLSDSGSFSGIGLAVPS
                     NTISKIVPVLISTGNYTHPWLGISASTLTSKLTENFENLSRDFKGVYVDSIIKDGPAD
                     NAGLRGSTTDQYGDKHGNDIITAVDSHNVTYMEDLVSYIDENKQPGENLNLTVIRNQT
                     YLDLGVLLGDRSNSTKSDNSTKSEDAKDPYG"
BASE COUNT         1250 a          723 c          699 g         1318 t
ORIGIN      
        1 ccaccttcta cactcaattc ctgcatctct ttaacataga aatctttagg cgatatattt
       61 tcctctttta acatgtgaga taattttctt tcaattcttc catctgctga tttgaatgaa
      121 taaccaggca agtgcatagc agggaccatc tcagtaccat catcattgag atatttcatt
      181 aacttcccca aagtcaattg gttttctaac ttgaaacaaa aatcattttt gatacaagag
      241 gtgattgatt ccccatcgcg tatcatgtta cttagacatc tgttaaaaag aaaagcctgg
      301 taagcatgaa cgaacaatcg tcttatgttt attggaacag atctcagtgc ggctatgtaa
      361 tccctgccat tagcaagtga cagtaagata ttccgctcaa gatccatgcc ttttggaatc
      421 gtctttatga cacttccata attttttgga tccttaaatt tttctcttat ttctttacta
      481 aattgcgtat catattctgt ggtatcgcat aagaatattt ctacagctct cttaaaattc
      541 cttttaataa tctctctacc gactagatga gtaactagtc tttcacttcc aaatcgttga
      601 agaccataat aatttggaat attcgtaatt tcggtaataa attctgaaat atcatttcga
      661 tttggattag taatgattat ctcaaattgg tttcccataa tatgcgattt cttaatagaa
      721 ttccttgtaa atccaattaa tgataaattt gtatgcttag tagtaccttc tttatattta
      781 ctgccctcac aagtagcata ttgcgtagta accgctttag catccttaat gcccaaaact
      841 ctaattcttg ttccaagctg attgaagatc tctatgatgg cgtgattaga atctaatcct
      901 tttttattta gtaacaataa tggaaatctg taagacttgt caggaatttt agatatgtct
      961 tttgaaatta attcagttag caattccaga accttaaaat cctcattctt ttcctttatt
     1021 gaacctccaa ttccttcaaa ttttgtagag tataattcaa tgccagccat cttgtcaata
     1081 actggaacag cactgttcat tatctgttga tttgccaaat acattatttt tattttttat
     1141 tctttatttt ttattgaata gatatcatcc atccatgtct caaaaactat cctgtatcta
     1201 atgtttggtg cgaaaatcat aggccaaaat aagatccaat ctttgagtaa aacacaacta
     1261 taaagcttaa tatatgatct gagacaagtg aaattgtgga tagattagat tcgaatccat
     1321 gtagaaagtt cgtaatttgc gaaaactgcc tccactctga cagtatatgc acgttctatg
     1381 atgcccatag atattgtgta gaatgtttat gtgaccatgc atgctgtcct gaatgtagct
     1441 ctgggtatca tgcgatcatg attgcagatt agatcttaag ttagcttcat ttttctgacg
     1501 gttttgcgat tagtaagaat ccgaaggaat tcatattctg aaatttttcc gagtaatcta
     1561 caatactgta ggttttgaaa ataaagaatt tatagaaaga aagccacaga taggatatgg
     1621 gtgtaagtcg gtacgtcgca aaggagataa tgaaggaaat tggcaatcgt tctagagaat
     1681 tctatgaatt tgtattacct cctgttgaca tttatgaaga tggtacagaa cttgtggtca
     1741 tagtggatct tcccggattt caaaaaaaag acatacatgt aaatatctct aaagatattc
     1801 taacattgag ggcaaagaga gtcattgata tggactcgca tactattcat tttacccaac
     1861 gcccaagcaa aatcgaaaag aagattcctc taccgtattc catccctgaa gatgacaatg
     1921 caaaaactaa ggcggattat gcaaatggtg ttttgaaaat taggatacca atatccaata
     1981 tgacaaatgt accgatcact taagaaggca acatttgatt ccctttaaca atttttcaaa
     2041 aatgaattag taatctatgc aacttgtgta agtcctagat taatcgtaca ctgttagttt
     2101 tattatgatt tatattctat aaaataagta gtcacatctt gtttggaagc taatagtatt
     2161 cttataatgc taatgtggtt gggagagtta acactagcaa gttggttact ctcatatggt
     2221 gctgagcatc tagcaaccag gtttggtgca aggttcgtag gaagaacttt gcttagtgta
     2281 gcaaccacac ttcctgaaat tgctatagtc gcatatgccg catctgccgg ttcttacggc
     2341 attgctcttg gtgcaggttt gggaagcaac gtactgatga tgacgttggg cttagcaata
     2401 atgctgataa ttgcaactac acgactttca aaaaaaccaa tcaaaaaaat agatgtcagt
     2461 tcatttaagc tggacaagat ttttctccta ttaacggcgc tagtaagtgc aatcctgttc
     2521 attgatggat accattttat tgatggagta gtgtttactg ctttgttctt agcatacgtg
     2581 tttgtcgcat tttatgaaat gaaattagaa aaaaagaaag acaaagaaaa aattatcgaa
     2641 gaatatagca atgcttcaaa aagtgttaat cttccgacca atcaaaaaca attaataaaa
     2701 tcaggaataa tctttatgat aggaacaatt ggtatttttt taggtgccga accatttatc
     2761 aagtcattgg aacatgtatc agttgaaatc ggagtttcag caataatact ctcagtggta
     2821 ataagtccga ttgccggtga aatgccagaa aaaatatcat tgatgttact tgccagaaag
     2881 ggtgcgcagg ggacatcgat tgcaattgcc aacgtacttg gatcaaagat cttaaacaat
     2941 acattattac ttgcatttgc ggtatttgga gccatctatc acagtgggct gagcgcttcc
     3001 atagatcgaa ccgatatctt atcacaacaa atgatattag caacagtagt tacgtttatt
     3061 gcagttggtt tattatttag aaaggaaatt ggaataagga cggggctcgt gcttttggta
     3121 atgtacattg taagtattgg attgcaattc tttatgaatt cataatctag tgaaagttga
     3181 ccctagcttc ccgattccca tagagtaaat atgatttgtc gattgattcc gcagaagggt
     3241 taaccatacg gatcttttgc atcttcggat ttagtactat tatcggattt agtactatta
     3301 ctacgatctc ccagcagaac accaagatcc aaataagtct ggtttctaat aacagtcaga
     3361 tttagattct ccccgggctg cttattttca tctatgtatg atactagatc ctccatgtaa
     3421 gtaacgttat gactgtcaac cgccgtaatt atgtcattgc catgtttatc accatattga
     3481 tcggtagtac taccacgaag tccagcatta tcagcaggtc catccttaat tattgaatca
     3541 acatacactc ccttgaaatc tctactcaaa ttttcaaaat tttctgttaa ttttgatgtt
     3601 agagtgcttg cagaaattcc cagccaggga tgggtgtaat ttcccgtgct aatgagtacg
     3661 ggtacgattt tagatatagt gtttgaagga actgccaaac cgattccaga aaaacttccc
     3721 gaatctgaga gaacccctgc agtgttcatt ccaattactt cttccccgat actaagaaga
     3781 ggtcctccgg aattaccggg attaatcaat gcatcagttt gaatcacact aggaatacta
     3841 aattgtgaac cttcagttga aatcaaacgt cctttctgac ttacgacgcc aacagacata
     3901 gaacctgcaa gtccataagg atttcctata gcgatgactt gatcgcctac ttctactgca
     3961 gaggaatttc caagtgttaa tggactaagt
//
LOCUS       DASUMD010000204         3847 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1068171, whole genome shotgun sequence.
ACCESSION   DASUMD010000204 DASUMD010000000
VERSION     DASUMD010000204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3847)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3847)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3847
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1068171"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            180..2582
                     /locus_tag="VFX26_05565"
     CDS             180..2582
                     /locus_tag="VFX26_05565"
                     /inference="COORDINATES: protein motif:HMM:NF012544.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEX5573978.1"
                     /translation="MSDADEEPRTNGGATSHNQLVRSLGLLDILMVGIAAMIGGSIFV
                     LTGPAIGLAGSAVIIVFIINGIITLFTAMAYAELGSAMPEAGGGYLWVREGLPRPNAF
                     ISGWMAWLAHIIAGSLYAVSFASFLTGLLDMTNLAHDPLLLNIIPLDKLIAVAAIAAF
                     TYINIKGTSETGRTGVVVTIIQLGLIFILIAAGLWVMNGHPNWEMNFSDFAPMGIGGI
                     VAAMGLTFIAFEGYEVIVQTGEEVKNPKRNIPRAIFISLTAVVILYCLIAFVSIGAIF
                     PAGIESWKYIGDAGELGIMKAAELILPYGAFIVLGGGLISTLAALNATTFSSARVAFA
                     MGRNYNMPNQLSAIHRKNKTPYIAILISGIIMAIMAFGLPLEQIAVAAGVIFLLLFTQ
                     VNMAVITIRRIYGDKLDYGFKTPFFPVIPIIGIFLKLGLAVYLLFTQPLSWAITIVWV
                     VIGFFIYRMYTFRKEIEHYAPIVTSEGDLERKDYRILIPYTPEDPDRLLKYAIRIAKE
                     NIGEINILRVITVPKQTPLSAGTGYAETARKSFEPLDKLLDKENIPNHYLVRISHDAN
                     EAILATVEEQKIDLLITDFETFRNSKKIQTLLTCDVLTVLSEGNEEFTLEPSRKSRGR
                     VGQKNLVVLYDGGDHSDVVLKATSWLERSGQFKINVLYINTKNEDEHEKIVKITDILK
                     QKEYLEQVGIEFNEITLSDNDLKYSNEAADTILSSLGNFQPDVLITGASISKFSFFTD
                     PHFLNMLYELKCPVIVARHFAIPGVHRIKTLIQRLRTLILEKIEDLKKIDKFKSTSRQ
                     GK"
     gene            2762..>3847
                     /locus_tag="VFX26_05570"
     CDS             2762..>3847
                     /locus_tag="VFX26_05570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573979.1"
                     /translation="MKIFNGNVNRRKTHLSLWVLFLIASLFLNSIYGAQNIELSSNDL
                     ILVTVNTQRILEQMNLVQASLTKGDNTRAFEHAYISHSIILPSIKDKLGEIDQESAAR
                     LESLLIDLPILVRSTSQLPEIGNKLAQIVNILNNINSDLLDPNSSDYHSIIASTITAL
                     LNDTSKFYQLSDFGSTKNPSNQVDYENAIGMVDISYNLYKNISKSFSDSKQQELESFF
                     MDLKNSLATKSEAESISKLITAIQANLNEESNIQSDDSLRIYFGNIKHLITKIDGAIK
                     NNSDFSSAVKYATTAYLDNFEYIEAPLEKVDPTLMLNLEIMMREELRELLKNEQQSQA
                     IVLLANITNNLSHAASLLNVNYENLSLN"
BASE COUNT         1290 a          656 c          718 g         1183 t
ORIGIN      
        1 ctggaacaac ctgtaatcag tgcaacttga tgcatcacca taatatccgt ttatttttat
       61 atatatttag ttgctaaaat taaatagatt ctattaattc ttcatgtgct gtgaagaggg
      121 ttagcaaagg tcagctgatt aaaaacatta atttatcatt ggaatcgaat cgatagcaat
      181 tgtccgacgc tgatgaagaa ccgcgtacaa acggaggcgc cacgtctcat aaccaattgg
      241 ttaggtctct gggactcttg gatatactca tggttggaat agctgcaatg atcggcggtt
      301 cgatttttgt tctgactgga ccggcaatag gtcttgcagg cagtgcagtt attattgtct
      361 ttattatcaa tgggataatc acattattta ctgccatggc atatgcagaa cttgggtctg
      421 ctatgcctga agcaggtggc ggatatttat gggtgagaga aggcttgcct cgacccaatg
      481 ccttcataag tgggtggatg gcctggcttg ctcacataat cgccgggtca ttatatgctg
      541 taagttttgc ctcgttcctc acaggattac tggatatgac gaatcttgca cacgatcctt
      601 tgcttttgaa cataataccc ttagataagt tgatagccgt ggcagctatt gcggctttca
      661 cttatatcaa catcaaagga acgtctgaaa cgggtaggac cggagtcgtc gttactataa
      721 ttcagttagg actaatattc attttaatcg cagccggttt gtgggtcatg aatggacatc
      781 caaactggga gatgaacttt tcagattttg caccaatggg gatcggtggg atagttgctg
      841 cgatgggtct gactttcata gcattcgaag gctatgaggt aatcgttcaa actggagaag
      901 aagtaaagaa tccaaaaagg aacattccac gggctatttt catatctcta actgctgtag
      961 ttattttgta ttgtttgatt gcttttgtat ccataggggc aatatttcca gcaggtatcg
     1021 aatcgtggaa atacattggt gatgcaggtg agctaggaat aatgaaagca gctgaactta
     1081 tacttcctta tggagcattt atcgttctag gaggaggatt gatttctaca ctagctgcgt
     1141 taaacgcaac tacattttca tcagccagag tagcttttgc tatgggcaga aattacaata
     1201 tgccaaacca gctcagtgct atccacagaa agaacaagac accctatatc gcaatactaa
     1261 tttctggtat cataatggcc attatggctt ttggattacc tcttgaacag atcgctgtag
     1321 cagctggtgt tatttttctt ttattattta cccaagttaa tatggctgta atcactatcc
     1381 gaaggattta tggtgataag ttggactatg gtttcaaaac tccattcttt cccgtaatac
     1441 caataattgg tatctttcta aagcttggac tggcagttta tctactgttt acacaaccat
     1501 taagctgggc gataaccata gtatgggtcg taattggatt ctttatatat cgaatgtata
     1561 cattcaggaa agagatagag cattatgctc caattgttac cagtgaagga gatcttgaga
     1621 ggaaagatta caggattctt attccatata cccctgaaga tccagataga ttattaaaat
     1681 atgcgataag aattgcgaaa gaaaatatcg gggagattaa tattttgcga gttataaccg
     1741 ttccaaaaca gacaccacta tctgcaggaa cagggtacgc tgagactgca aggaaatcat
     1801 ttgaaccatt agacaaactc ctcgataagg agaacatacc aaatcattat cttgtaagaa
     1861 tctctcatga tgcaaatgaa gctatactgg ctacagtgga agaacaaaaa atagatttat
     1921 tgataacaga ttttgaaaca tttagaaaca gcaaaaaaat tcaaacatta ttgacatgtg
     1981 atgtattgac cgttttgtca gaaggaaacg aagagttcac acttgaacca agtcgaaagt
     2041 caagagggcg tgttggccag aaaaatttag tcgtgctata tgatggaggt gatcattctg
     2101 atgttgtatt gaaagcaacc agttggttag aacgctcagg acaattcaaa attaacgttc
     2161 tgtacattaa tactaaaaat gaggacgaac acgaaaaaat tgtaaagata acagacatat
     2221 tgaaacaaaa agaatatctt gagcaagttg gaattgaatt taacgagatc acactttcag
     2281 ataatgatct taaatatagt aatgaggcgg cagatacaat cttgtcttca ttgggtaatt
     2341 ttcaaccaga tgttctgata actggtgcca gcatttcaaa atttagtttc tttactgatc
     2401 cccattttct aaatatgtta tatgaattga aatgtcctgt tatagtagca agacattttg
     2461 ccatccctgg agttcacaga attaaaactc ttattcaaag attaaggaca ctcatacttg
     2521 aaaaaataga agatttgaaa aaaatcgaca agtttaaatc aacttctcgg caaggaaaat
     2581 aatttcttcg aatttaggag aaaggcattt ttggatctct gagactttat aatcccaaat
     2641 agcaattaat ttaaaattat caagatttat atagaattaa tttacttagg taagcctaat
     2701 agttttatgt catttaaaaa attattcctt caaacgttat catatgaggt agatagattt
     2761 aatgaaaatc tttaatggga atgtaaatag gagaaaaact cacttatctc tttgggttct
     2821 tttcctaatt gctagcctct ttcttaattc catatatggg gcacagaata ttgaactcag
     2881 ttcaaatgac ttaattttgg ttaccgttaa cacacaaaga attttagagc agatgaactt
     2941 agttcaagca agtctgacaa aaggagataa cacaagagct tttgaacatg cgtatatctc
     3001 ccactcaata attcttcctt caattaagga taaacttgga gaaatagatc aagaatcagc
     3061 tgcaagatta gaatcattat taattgattt accaatacta gtaaggtcca cttctcaatt
     3121 accagaaata ggaaataagt tagctcaaat cgtgaatatt ttgaataata tcaactcaga
     3181 tttactggat ccgaatagtt cggattacca ttcaatcata gcttcaacta tcacagcact
     3241 attaaatgat acatcaaaat tttaccaatt atctgatttt ggtagcacta agaatccctc
     3301 caatcaagta gattatgaaa atgcaatagg tatggtagat atttcatata atctatacaa
     3361 aaatatttcc aaatctttta gtgattccaa acaacaggaa cttgagtcat tcttcatgga
     3421 tctaaagaat tccttagcta ctaaatctga agctgagagc atctcgaaac tcataacagc
     3481 catccaagcg aatctaaatg aagaatctaa tattcagtca gatgattctt taagaattta
     3541 ctttggaaat ataaaacatt taataacaaa aatcgatgga gctataaaga ataattcgga
     3601 cttttcttct gctgtaaaat atgcaactac tgcatacctg gacaatttcg agtatattga
     3661 agcaccgctt gaaaaagttg atccaactct tatgcttaat ttagaaataa tgatgagaga
     3721 agagcttcgt gaactactaa agaacgagca acaatcacag gcaattgtcc ttctagccaa
     3781 tatcactaac aatctttcac atgctgcaag tctcttaaat gtaaattatg aaaatctaag
     3841 tcttaat
//
LOCUS       DASUMD010000205         7860 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_183102, whole genome shotgun sequence.
ACCESSION   DASUMD010000205 DASUMD010000000
VERSION     DASUMD010000205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7860)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7860)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7860
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_183102"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..474)
                     /locus_tag="VFX26_05575"
     CDS             complement(<1..474)
                     /locus_tag="VFX26_05575"
                     /inference="COORDINATES: protein motif:HMM:NF013595.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573980.1"
                     /translation="MSRVKKSLVYLLVIALFGIVYQNPFCCDAAYSQQTELKYVKQIG
                     MKGDEKGQFTNPHSLAVDNLGNLFVGDTGNKRVQKFSPDGTFITSWGSEGNKSGQFMG
                     LHDVAVDPEGKFVYTVELKNHRVQKFYSNGSFITKWGYNGTGDRDLMRAPHQIAIN"
     gene            1053..1910
                     /gene="tfb"
                     /locus_tag="VFX26_05580"
     CDS             1053..1910
                     /gene="tfb"
                     /locus_tag="VFX26_05580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018852.1"
                     /note="stabilizes TBP binding to an archaeal box-A
                     promoter; responsible for recruiting RNA polymerase II to
                     the pre-initiation complex; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription initiation factor IIB"
                     /protein_id="HEX5573981.1"
                     /translation="MVTDLVSGEIVCSNCGTVVIDGIEENGKEWTNSKDRETDKSRIG
                     MPFSLAVHDMNLSTIIGKTNKDSTGQTIDSGMQARMNRLRIWDSRTMFRDSTSRNFTT
                     AFILLDKLKDKLGLTPPIVEKTAYTYRKVQEDGLIRGRTIGAVLVACLYITCRELGVS
                     RTIDELAEASNIRRKAIAKIYREIVFHLKRKIPQVNCFQCIDKIANKIELNERTTRHA
                     RDLMKKVLEQEFSAGKDPMGFAGAVLYVSLQMEGKTIRQIDIAEAAGVTEVTIRNRAK
                     ELKSKLHLI"
     gene            2024..2395
                     /locus_tag="VFX26_05585"
     CDS             2024..2395
                     /locus_tag="VFX26_05585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573982.1"
                     /translation="MVNDDVDALFSLYEIYDRNRDSILWFLEDFKAKNYDEYKQKYHG
                     TTKDRCHFIRVCGFFELSGTLVKRQLIDANLYFDVFNPTPFWQKAKPVIEGMRETRPF
                     IYENFELLNQMKLKWAQKRTK"
     gene            2500..3384
                     /locus_tag="VFX26_05590"
     CDS             2500..3384
                     /locus_tag="VFX26_05590"
                     /inference="COORDINATES: protein motif:HMM:NF014017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HEX5573983.1"
                     /translation="MSVFIGCSGWSYSDTFEKGGWVKAFYPDAQTKKLQYYADFFDTV
                     EMDATFYEKFYMYMTKDTFTAMVRATPDNFQFSIKAPETVTHDNKLDVSRGAMAIFDE
                     FLDKISPLKYANKLGAVLIQLPPSFTVKEFRNTEEFLDRLPSGYDYAVEFRHPSWDTE
                     GPWELLKHYNIAAVMTDSPASDKLQFLSQPIVTSNHSFIRWHGRQVKPRYNYLYSRDE
                     LTPWVEKVKQLSTETVVVRGYFNNHYGARAVVNAIEFKEMLGTNLTQKDRAVLENARN
                     LLSQPSRQATLDDTLRSN"
     gene            complement(3381..5645)
                     /locus_tag="VFX26_05595"
     CDS             complement(3381..5645)
                     /locus_tag="VFX26_05595"
                     /inference="COORDINATES: protein motif:HMM:NF012364.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase domain-containing protein"
                     /protein_id="HEX5573984.1"
                     /translation="MFSGWLFDAYAKNDKMVFWIRQSNGETIRLEDDWCHPIYVATDE
                     HLLFEQILTSEDIAKHISSSEIVQKYENLTDSKESMVLQIRLKDSNSAAKVASKIEKK
                     FSFGKIRLYNVDVLPAQTYFYEYGIFPTCYCHINTNKSGLDWDVRDNVRSTDYELPQF
                     ENVHLRVFPKVARGTIPRYTDRIDHIEIQKFSTNEIIRIEKDSESDILCKLMIQMASI
                     NADFVLTDDGDSFTFPYLIERANSNRIKIELGREQDGGELVKPAKEGTSYFSYGKIFF
                     KPSTIRLPGRIHIDTDNSFIMAESGLPGLYELARICRMPFHTASRASIGKCMSSLQFY
                     TADRKNVLIPWKPTLAEHVKSLEELLIADRGGMILEPWIGVHENVAELDFVSLYPSIM
                     EKKNISAETVFCDCCPDSRLRVPGLDNYYRCEKRKGLVPTALEILLAKRKIYKQLRDS
                     ATNTQLKEIYDARQTAIKWVLVTSFGYLGFNNAKFGRIDAHIAVCAFDRKILIDTIRT
                     AEQQNFKVLHAIVDSIWVQKKNSNTDITFDRYESLKKAIENKTGFDISLEGVYKWIAF
                     VPSKSNSMVGVPNRYFGVFEDGTLKLRGIEARRHDTPVFFSNYQQLILNVLSEAANIS
                     EVKMMFPKIKKIFESHLKLLRERNVSLTDLVFTKRVSKNYDEYEDRDTVENNALLDLS
                     GGGKSLRAGEILKYVVTDYYRRHSKKRSIPIELVNSQTKYDVKRYCEILIEVTDTVTK
                     PFGISLKAENAIQF"
     gene            complement(5672..5929)
                     /locus_tag="VFX26_05600"
     CDS             complement(5672..5929)
                     /locus_tag="VFX26_05600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573985.1"
                     /translation="MTFFPNEDILTREIQAWSGFADALREEDRVLFLRMLKQCYQYID
                     SINSKGEYYSTESLLISLIFVQHKIIDWLINNGNFNLQEWR"
     gene            complement(5935..6219)
                     /locus_tag="VFX26_05605"
     CDS             complement(5935..6219)
                     /locus_tag="VFX26_05605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573986.1"
                     /translation="MGRTIPSFRLACMAEELRWRIFRSRLSKSDRKKFDEMFSTCRLY
                     NSACANSARPIVLECIIMSIILNDFKRLTEILKESNNKNIWIQDQSNETR"
     gene            complement(6223..7026)
                     /locus_tag="VFX26_05610"
     CDS             complement(6223..7026)
                     /locus_tag="VFX26_05610"
                     /inference="COORDINATES: protein motif:HMM:NF020014.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573987.1"
                     /translation="MSNRVEERLEGSVQISLVNKIKNHKLRSALDYLNQISFTVDGTS
                     NKTIDLLSNDAMCLLGNSRMTNLMLTKLTVHCLLPKKYGGFRNSKVFILDAGNCTDVY
                     QFVDFMKQYGLNIKKNLKKIMISRVFTVYQLTHFLKYELPKTVHDYRINIVIIPDLLA
                     MFLREAEMDFNEVKFLLTEIINILKTITHEGKVLLITSLSLDDKLPPFIMELGNMIVK
                     YFSKCVTIDKNKTNNKFKIVIQQKQDADYIAVKKYTSLTAEDVLTVKGR"
     gene            complement(7256..>7860)
                     /locus_tag="VFX26_05615"
     CDS             complement(7256..>7860)
                     /locus_tag="VFX26_05615"
                     /inference="COORDINATES: protein motif:HMM:NF017536.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="pirin-like C-terminal cupin domain-containing
                     protein"
                     /protein_id="HEX5573988.1"
                     /translation="VQWMTAGSGLLHSEMPEKEFTKNGGRLHGFQLWINLRKTDKWNK
                     PDYQDVPSTKIPQVSTSDGKVSVKVIAGNFGEAKAVINTLTPILYLHFTLQPGGEVVQ
                     SVPENLNAFAYVIGGKGLFGKDKTAVGEKNLIVFKNDGGHISIRESDNAKSPLDVLLV
                     AGMPLNEPIVQYGPFVMNTREEIDKTLEDYRNGRIGKIDF"
BASE COUNT         2482 a         1458 c         1366 g         2554 t
ORIGIN      
        1 atttattgcg atttgatgtg gagccctcat caagtcacga tcccctgtac cattatatcc
       61 ccattttgta ataaagcttc cattagaata aaatttttgt actcgatgat tcttgagctc
      121 aacggtataa acaaattttc cttcagggtc aacggcaaca tcatgcaagc ccatgaactg
      181 accactctta tttccttctg agccccaact cgtaatgaat gtaccatcag gagagaactt
      241 ttgtactcgt ttgttgcccg tatctcctac gaaaaggtta ccaagattgt caactgcaag
      301 actatgagga ttggtaaact gtcccttttc atcgcccttc attccgatct gttttacata
      361 tttgagctcc gtctgctgag aataagcagc atcgcagcaa aaaggatttt gataaactat
      421 tccaaacagg gctataacta gcaaataaac tagagatttt tttactctgg acatttggaa
      481 taaaacaatt gtgttattga aaaataaata tgtattcaaa tgatgtgttc aaatgtatta
      541 tatgaagaat ttttagtgcg taaaaattac tacttgtaaa tccagataac caataagcga
      601 tactaataat ccgaaccggg tgaagtatat agaggcaaat aacactcttc acacttatag
      661 tagagaaaat cgaaatcaga acacaaggtc attacgtcat gacatctagg acattctatt
      721 tcattttcaa gattgtccat aattgaaatc tgttcccttt ttttttctaa cagatattgc
      781 attaactttg agttagatgc aacgttcatg gtcaatttac tataggtaat atattataaa
      841 agagctacaa aattcaacag cttctcaaga gggtattctg aatatagggt ctcagtaaaa
      901 gtatcatatt tcattctaaa attctataaa taatattggc tttgacattc cagtacaata
      961 cttaaatact tgatcagcgc atatataact acttaaacgt tataatgtca aaagtaatta
     1021 cgtgttcaac ctgtaatata gaagagaata agatggttac tgatttagta tccggagaaa
     1081 ttgtgtgtag taactgtgga acagttgtaa tagatggtat agaagagaat ggtaaggaat
     1141 ggacaaattc caaagatcgt gaaaccgata agagtagaat aggaatgcct ttttctcttg
     1201 ccgtacatga tatgaatcta tcaacgataa ttggcaaaac aaacaaagat tctactggac
     1261 aaacgattga ttcaggaatg caagctagaa tgaacagatt gcgaatatgg gactcacgta
     1321 ccatgtttcg ggatagcact tcacgtaatt ttacaaccgc attcatttta ctagacaaat
     1381 tgaaggataa attaggtctt acacctccta tagttgaaaa aactgcatat acataccgaa
     1441 aggtccagga agatggctta ataagaggta gaacgatagg cgcagtactt gttgcttgtc
     1501 tctacataac atgcagagaa ctgggcgtgt ctagaacaat tgatgaactt gcggaagcca
     1561 gtaatattag aaggaaggct attgcaaaaa tttacagaga gattgtattt cacttgaaaa
     1621 gaaaaatacc acaggtaaac tgtttccaat gtatagacaa aattgcaaat aaaatcgagt
     1681 tgaatgaaag gacaacaagg catgcaagag acctcatgaa aaaagttctt gagcaagaat
     1741 tttctgctgg aaaagatccc atgggatttg ccggggcagt attatatgta tcacttcaaa
     1801 tggaaggcaa aacaattaga cagattgaca tcgcagaagc cgctggagtt acagaagtaa
     1861 ctataagaaa tcgagccaag gaattaaaaa gcaaactaca tctaatttag cagtttcttt
     1921 aagtcctgtt aaagattgaa aagcagtctt cctcttcttt taaatctcgt acataaaaac
     1981 taattcaaaa atattttaat gctttggatg atattaacat acattggtaa atgatgatgt
     2041 agatgctcta ttttcactct acgagatata tgatcgaaac cgagattcta ttctttggtt
     2101 ccttgaagat ttcaaagcaa aaaactatga tgagtataaa caaaagtatc atggtaccac
     2161 taaagataga tgccatttta ttcgggtttg tggttttttt gagctttcag ggacattagt
     2221 aaagaggcaa ctcattgatg ctaatctgta ttttgatgtt ttcaacccca ctcctttctg
     2281 gcagaaggca aagccagtaa tagaaggaat gagagagaca agaccattta tttatgaaaa
     2341 tttcgagctt ttaaatcaaa tgaagctaaa gtgggcccaa aagagaacaa aataatcaat
     2401 gcatgaatga atgaatgata agaaaactag cagaataact tgtaatttta ttttacatat
     2461 ttttaattga gtgtttgtca atattactaa gaaaaaatta tgtctgtgtt tataggttgt
     2521 tctggctgga gctattcgga tacgtttgag aagggaggct gggtcaaggc attttatccc
     2581 gatgctcaaa ctaaaaagtt acagtattac gctgattttt ttgatacagt tgaaatggat
     2641 gcaacgttct atgaaaaatt ctacatgtac atgaccaagg acacgtttac agcaatggtt
     2701 agagcaactc ctgacaactt tcaattctca atcaaggctc ctgaaacagt aacgcatgat
     2761 aataaacttg acgtaagtag aggggcaatg gcaatattcg atgagtttct tgataaaata
     2821 tcacctctga agtatgctaa taaattggga gcagtattaa ttcaattgcc accgagtttc
     2881 acagttaaag aatttcggaa tacagaggaa tttcttgaca ggctacctag tggctatgat
     2941 tacgctgttg aatttagaca tccctcatgg gacacagaag gcccatggga attgttaaaa
     3001 cattataata tagcagctgt catgactgac tctccagcgt cagataaact acaatttcta
     3061 tcccaaccta tagtaacttc taatcattct tttattagat ggcatggaag gcaagtaaag
     3121 cctagatata attatcttta ctcaagagac gaattaacgc catgggttga aaaggttaaa
     3181 caactatcta cggagacggt cgtagtcaga ggatacttta acaaccatta tggcgcgaga
     3241 gctgtcgtta acgcgataga gttcaaagag atgttaggca caaatttaac tcagaaggat
     3301 agagcagtgc tggaaaatgc tcgaaattta ttatctcaac cttcaagaca agcaacattg
     3361 gatgataccc tgagaagtaa ttagaattgt atcgcattct cagcttttaa tgatatacca
     3421 aaaggttttg taactgtgtc agttacttct attaatattt cacaatatct tttgacgtcg
     3481 tatttggttt gggagttaac cagttctata gggatactcc ttttcttgga atgccttcga
     3541 tagtagtcag tcacaacata ttttaaaatc tcgccggctc ttaatgattt acctcctcca
     3601 ctcaagtcta aaagggcatt attttcgaca gtgtctctat cttcatattc atcatagttt
     3661 tttgaaaccc ttttagtaaa taccaggtca gtcagactaa cgttcctttc tcttaaaagt
     3721 ttcaaatggg attcgaatat tttttttatt ttcggaaaca tcattttaac ttcacttatg
     3781 ttggctgctt ctgataagac gtttaaaatt aattgttggt aattggagaa aaaaacaggg
     3841 gtatcgtgtc ttcttgcttc aattcctcga agcttgaggg ttccatcctc aaagacaccg
     3901 aaatatctgt ttggaactcc aaccatggaa ttactttttg aaggaacaaa cgcaatccat
     3961 ttgtacaccc cttcaagtga tatgtcgaaa cctgttttgt tttctatagc ttttttcaat
     4021 gactcatagc ggtcaaaggt tatatctgtg tttgaattct ttttctgtac ccaaatagaa
     4081 tctactatgg cgtgtaaaac cttaaaattc tgttgctcgg cagttcttat ggtgtcaatt
     4141 aaaatcttcc tgtcaaaggc acacactgca atgtgagcgt caattcttcc aaatttagca
     4201 ttgttaaaac caaggtatcc gaaacttgtt accagaaccc acttaattgc ggtttgcctt
     4261 gcatcataga tttctttcag ttgagtattg gtagccgaat ctctcagctg tttgtagatt
     4321 tttcttttgg cgagaagaat ctcaagggct gttggcacta gtccttttct tttttcgcac
     4381 ctgtaatagt tatccaaacc aggaaccctt agccttgaat caggacagca gtcgcagaat
     4441 accgtttctg ctgatatgtt cttcttttcc attatcgatg gatagagaga aacaaagtca
     4501 agttccgcta cattctcatg tactccaatc caaggttcaa gaatcatccc tcctcggtcg
     4561 gcaattaaaa gttcttccag gctcttgaca tgttcagcca gagtaggttt ccatggaata
     4621 agaacatttt ttctatcagc agtgtagaac tgcaagctgc tcatacattt tcctatactt
     4681 gccctagatg cggtatgaaa gggcattctg cagattcttg ccagctcgta taagcccggt
     4741 aatcccgatt ctgccataat aaatgaatta tccgtatcaa tgtgtatcct tccgggtaac
     4801 cttattgtcg aaggcttgaa aaaaatttta ccatatgaaa agtacgaagt gccttctttt
     4861 gcgggcttga ctaattcacc tccatcttgt tctcttccta gctctatttt tatacgatta
     4921 ctatttgccc tttcaatcaa gtacggaaaa gtaaacgaat ctccatcatc tgtcagcacg
     4981 aaatctgcat ttatgcttgc catttgtatc ataagtttgc aaagtatatc actttcagag
     5041 tctttttcaa tccgaattat ctcatttgtc gaaaattttt gtatttcaat atggtctatc
     5101 ctatctgtat atcttggtat agtacctcgt gctacttttg gaaatactct gagatgtacg
     5161 ttctcaaatt gtggtaactc ataatcagta gaccgtacat tatctctcac gtcccaatcc
     5221 aaaccagatt tgttcgtatt aatatgacaa tagcatgtcg gaaatatgcc gtattcataa
     5281 aaatatgtct gagctggaag tacatccacg ttatagagtc taattttccc gaagctgaat
     5341 tttttttcaa tttttgaagc tacttttgca gcactattag agtcttttag tcttatttga
     5401 agtaccattg actcttttga atctgtcaag ttttcatatt tctgtacaat ttcagaactc
     5461 gatatatgtt tggcaatgtc ttcgcttgtt aaaatttgct caaataataa atgttcatct
     5521 gtagctacat atatgggatg gcaccaatca tcttctagtc ttattgtctc tccattgctc
     5581 tgtcttatcc aaaagaccat cttatcattt ttggcatatg catcaaataa ccatcctgag
     5641 aacatatctg gctactaatc cctaaattag attatctcca ctcttgcaag ttaaaatttc
     5701 cattattgat taaccaatca ataatcttat gttgaacaaa gattaaactt attagtagag
     5761 actctgtcga atagtactct ccttttgaat tgattgaatc aatatattgg taacattgct
     5821 ttagcatacg caaaaatagt actctgtctt cctctcgtag tgcgtcagca aatccgctcc
     5881 atgcctgaat ttctcttgtt agtatatctt cgtttggaaa gaatgtcaac tttatcaccg
     5941 agtttcatta gattggtcct gaatccagat attcttatta ttactttctt tcagtatttc
     6001 tgttagtcgc ttgaagtcat ttagaataat tgacattata atacactcca aaactattgg
     6061 tctagcagaa tttgcacatg cgctgttata gagacggcaa gtcgaaaaca tctcatcgaa
     6121 tttttttcta tcactcttgc tcagtcgaga acgaaatata cgccacctca actcctcggc
     6181 catacatgct agcctaaaag acggaattgt ccttcccatt catcatcttc ccttgaccgt
     6241 caatacatct tctgcagtta atgacgtata ctttttaaca gcaatatagt ctgcatcttg
     6301 tttttgctgt atgactattt taaatttatt atttgtcttg tttttgtcaa tcgtaacaca
     6361 tttgctaaaa tatttaacga tcatgttccc taattccata atgaaaggtg gcaatttatc
     6421 gtcaagagaa agtgaagtta ttaacagtac tttaccttca tgagtaattg tcttaagaat
     6481 attaataatt tctgttagca agaacttcac ttcgttaaag tccatctctg cttcccgcag
     6541 aaacattgcc aacaagtcag gaattattac tatgttaatt ctgtaatcat ggacagtttt
     6601 gggaagctca tattttagaa aatgagtaag ctgatataca gtaaatactc tggatatcat
     6661 tattttcttg agattttttt tgatgttcag accgtattgt ttcataaaat ctacaaactg
     6721 atagacatca gtacaatttc cggcgtcaag gataaacact tttgaatttc taaatcctcc
     6781 atatttcttt ggcagtaaac aatgcaccgt tagctttgtt aacatgagat ttgtcattct
     6841 tgagttacca agcagacaca tggcgtcgtt agataacaaa tctatggttt tgtttgaagt
     6901 accgtcaact gtaaatgaaa tttgattaag gtagtcaaga gcactcctaa gcttgtggtt
     6961 cttaatttta ttgactaagg aaatctgtac agaaccctct agtctttctt caacgcggtt
     7021 tgacatggag cttagcttta gtgcattgta ctctttttaa tcaaggagct acttttagag
     7081 agggagggct gatcctaata acagaagaac atgccaaagt tggtatattc agaattttag
     7141 ttagcatgcg agagggcagg ggttaaaaat actagtgcat aattttatga aaacacgtaa
     7201 agcaaaaaca aaataaaaaa ataaaataaa taggatagga atgtcctaat accttttaaa
     7261 aatcaatctt tccaattcta ccattccgat aatcctccaa tgttttatct atctcttctc
     7321 gagtattcat aacgaatggt ccgtactgta ctattggttc attgaggggc attcctgcca
     7381 caagcaatac atccagagga gattttgcat tatccgattc tctaattgaa atatgtccac
     7441 cgtcattttt gaacacaatc aagttctttt caccgaccgc tgttttatcc ttgccaaaaa
     7501 gacctttacc accaataacg tacgcaaatg cattaagatt ctcaggaacg gactgcacaa
     7561 cttctcctcc tggttgaagg gtaaagtgca agtacaaaat gggagttaaa gtattgatta
     7621 ctgccttagc ctcaccgaaa tttcctgcaa taactttaac agatacttta ccatcagaag
     7681 tactgacttg aggaattttt gtggaaggaa catcctggta atcaggctta ttccacttgt
     7741 cagttttgcg aagatttatc cacagctgaa atccatgcaa ccttccgcca tttttagtaa
     7801 attccttttc cggcatttcc gagtgaagca agccagatcc agctgtcatc cactgaacat
//
LOCUS       DASUMD010000206         3434 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1511960, whole genome shotgun sequence.
ACCESSION   DASUMD010000206 DASUMD010000000
VERSION     DASUMD010000206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3434)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3434)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3434
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1511960"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..460
                     /locus_tag="VFX26_05620"
     CDS             <1..460
                     /locus_tag="VFX26_05620"
                     /inference="COORDINATES: protein motif:HMM:NF039905.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573989.1"
                     /translation="KIKNRFVSTMASIVATLPSYNSNECDIVIDRDKKIFSKMTMGIV
                     SNGRFLGGGFKAAPRAKFSDALMDIIILTNSGSFKMLDKLIELKGTSTYKYEDDILYY
                     QASEVKFLPKERNVTVTVSVDGEPIGILPAIFKSYHNALTIKTETHSSKI"
     gene            complement(473..715)
                     /locus_tag="VFX26_05625"
     CDS             complement(473..715)
                     /locus_tag="VFX26_05625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573990.1"
                     /translation="MSREKRNPFKRDQALNDATSGQFGEEPVDIPENHSEMQKQEDER
                     KKTARKFSKILNNYPDSMRYTLAFSLTSPYYIQFMC"
     gene            929..1528
                     /locus_tag="VFX26_05630"
     CDS             929..1528
                     /locus_tag="VFX26_05630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573991.1"
                     /translation="MSNLIIFLPNISGSFALQFTDYTSEKNQIQFQYPSDWQIKEKAN
                     RLDEGSQIDISNKKIAAGKLRIHFYDDLLESFGTTNLDAAFTKFYSATTTDDNEYEFK
                     IIESPSFVSIDSQRTGSFMLMFKQKNEIDPVSGAVKYWITFVGNSGYKMEFMATPENF
                     DTLDNIEIRDQFIESIIFLGQNNAINNSGGISSVASVAK"
     gene            complement(1754..2416)
                     /locus_tag="VFX26_05635"
     CDS             complement(1754..2416)
                     /locus_tag="VFX26_05635"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013742.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX5573992.1"
                     /translation="MNLKRSREDDVNKTVLKVLAEIEEKARKDFLPSIGPIKGKIIED
                     VIKDHKPKKVLEIGTLHGYSAILIANTMLSYIYGKENFDIDFKSREPILISVEKDEKL
                     ASIARNNIENSRLSKLIQVINGEAIEEIPKLKSKFSMIFLDATKSEYLKYLQLIEEYS
                     LLNKRAVVVADNVIMYENEMKDYLDYVRYSGKYISRTTMTTLEFTKNVTDALEVSINV
                     VL"
     gene            2559..2972
                     /locus_tag="VFX26_05640"
     CDS             2559..2972
                     /locus_tag="VFX26_05640"
                     /inference="COORDINATES: protein motif:HMM:TIGR03618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PPOX class F420-dependent oxidoreductase"
                     /protein_id="HEX5573993.1"
                     /translation="MSEQSNKLSDPHIRELFERKNFAFLSSLMKDGSPHVTPTWVDIE
                     NGNILINTALGRIKQSNISRDPRVALSIIDQNNQYEMVTIRGKVINQITGDAAEKHID
                     KLARKYVDMDKFPRRSKGERRVILKIKPEKIFYMK"
     gene            complement(3216..>3434)
                     /locus_tag="VFX26_05645"
     CDS             complement(3216..>3434)
                     /locus_tag="VFX26_05645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573994.1"
                     /translation="MLKNSKQFINLINMCREEKDIGKRYQLLNHINYLVPSELSVSIP
                     SIITHDCIDQILSSMEEKISPPIYQLTS"
BASE COUNT         1154 a          558 c          576 g         1146 t
ORIGIN      
        1 aaaaataaaa aatcgttttg tatctacgat ggcaagtata gttgcgaccc ttccatccta
       61 caacagcaat gaatgcgaca tagtaattga tagagataaa aaaatctttt ctaaaatgac
      121 aatgggtata gtttcaaatg gtcgtttcct tggcggcgga ttcaaggcag cgcctcgcgc
      181 aaagttttca gatgctttga tggatatcat aatattgaca aattcaggga gtttcaaaat
      241 gcttgataaa ttaatcgaac taaagggtac aagtacttac aaatatgaag atgatatact
      301 ttattatcaa gcttcagagg tcaagttctt gccaaaagag agaaatgtta ctgttactgt
      361 ttcagtagat ggtgaaccca ttggaatact tccagcaatt tttaaaagct atcataatgc
      421 cctgactata aagactgaga cacattcatc caagatttag ataatttatg agttaacaca
      481 tgaactgtat gtaatagggg gaggttaaag aaaaagccaa tgtgtatcgc attgagtctg
      541 gataattatt taatattttt gaaaattttc tggcagtttt ttttcgctca tcctcttgct
      601 tttgcatttc ggaatgattt tctggaatat ctacaggttc ttctccaaat tgtccactag
      661 ttgcgtcgtt taatgcctga tcacgcttga agggattcct tttttctctg ctcaatatta
      721 ttatttactt attgcataac atagcattaa tgaattatgt gaactggtaa ttaatagatc
      781 acaagcaggg catactgagg gatttttccg aaagttaaaa gattaaatct tattatgatt
      841 atttaatatt tgggaattct atggatgtga ggatttaata actttagaaa ttattggaaa
      901 gcgaaaattt gttattgtag cctttatttt gtctaatctt atcatatttc ttcccaatat
      961 cagcggatct tttgctttgc aatttactga ctatactagc gaaaaaaatc aaatccagtt
     1021 tcaatatcct tcggattggc aaattaaaga aaaggccaat agattagacg aaggatctca
     1081 aatagacatt tcaaataaaa aaatagcagc aggcaaatta cgaattcatt tctatgatga
     1141 tttattagag agctttggca caactaactt ggacgctgca ttcacaaagt tctatagcgc
     1201 gaccacaact gacgacaatg aatatgaatt taagataatt gaatcaccat cttttgttag
     1261 tatcgatagt caaaggaccg gctcctttat gttaatgttc aagcagaaaa atgaaatcga
     1321 ccctgttagt ggagcagtga aatactggat cacatttgta ggcaatagtg gctacaagat
     1381 ggaattcatg gcaaccccag agaattttga tactctagat aacattgaga ttcgtgacca
     1441 atttatagaa tctataatat tcctcggaca gaataatgct ataaacaaca gtggaggtat
     1501 ctcgagtgtc gctagcgttg caaaataatt aattggttca tcatttcacc aatataatac
     1561 gatatgatac tgtaagatcc ttttcctatg atagttcaag tgatgtcata attaaatagg
     1621 gtaatcttcc aaggtaactg tgatcggttt tatgttactc aaatcaataa gcagtgagac
     1681 aagtatgaaa agttatcaac cattgattac taagttgcag atttatcaac cattgattac
     1741 taaatttcat acattacaag acaacattaa tactcacctc aagagcatct gtaacattct
     1801 tagtaaactc caaggttgtc attgttgtgc gactaatata cttgcctgaa tacctaacat
     1861 aatctaagta atctttcatc tcattctcat acattattac attatcggca accaccactg
     1921 ctcttttatt tagtaaacta tattcttcaa taagttgaag atattttaga tattcgctct
     1981 ttgtggcgtc caagaaaatc atactgaatt tggacttaag ctttggaatc tcttctattg
     2041 cctcgccatt aattacctgg attaatttag acaatcttga attttcaatg ttatttcttg
     2101 ctatgcttgc aagtttctca tccttttcca cgcttattaa aataggctca cgtgacttaa
     2161 aatcaatgtc aaaattctct tttccgtata tgtaactcaa catagtattt gcaattaaaa
     2221 ttgccgaata tccgtgcaat gttccaattt cgagtacctt ctttggcttg tgatccttaa
     2281 taacatcttc tatgattttt cccttaatag gccctatcga aggaagaaaa tcctttcttg
     2341 ccttttcttc aatttctgcc agtaccttca atacagtctt gtttacgtca tcctccctac
     2401 ttcgtttcaa attcaatatt atttctcact ttaatataag aaaatttcga ttcatttcct
     2461 gtcatgaaaa ttcttttcta tataagaaag ttaatttata caataacgca tacttctacc
     2521 aaggaaacag ttattaaaaa tagagtcaat atttgtctat gagtgagcaa tcaaataagt
     2581 taagtgaccc tcacatcaga gaactttttg aaaggaagaa ttttgccttt ttgtcttcgc
     2641 taatgaaaga tggctctccg catgttactc ccacctgggt tgatattgaa aatggtaata
     2701 ttctaattaa tactgcattg ggtagaataa agcagtcgaa tatttccaga gatcccagag
     2761 tagctttatc aataattgat caaaataatc agtatgaaat ggttaccata agaggtaagg
     2821 tgataaatca aattactgga gatgcagctg aaaaacatat cgataaatta gcaagaaaat
     2881 atgttgacat ggataaattt ccacgaaggt caaaaggaga acgaagagtg atattaaaga
     2941 taaaaccaga aaaaatattc tatatgaagt agaactctca ttttgtgttg atgaatgtgc
     3001 aagattgaaa tggttatatt atatattgga tattgtacaa tatgtcttcg gatggtcaag
     3061 aaaaatgcgc agcatgtgga atgacattca atacccaaga ggaattgaaa gaacatatgc
     3121 tagaattgca ccgagaataa tatctaaaga ttaatctcat agatgtaatt ttgaagaagt
     3181 agaatcgagt aactaatttc gattgaagat gaaaattatg acgtaagctg atagatggga
     3241 ggcgaaattt tttcttccat agaactcaaa atctggtcta tacagtcatg agtaataatc
     3301 gatgggattg atacgctgag ctctgatggc accaagtaat taatgtgatt caatagctga
     3361 tatctttttc caatatcttt ttcttcgcgg cacatattta tcaggttaat aaattgttta
     3421 ctatttttta gcat
//
LOCUS       DASUMD010000207         4977 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1180856, whole genome shotgun sequence.
ACCESSION   DASUMD010000207 DASUMD010000000
VERSION     DASUMD010000207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4977)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4977)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4977
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1180856"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..625)
                     /locus_tag="VFX26_05650"
     CDS             complement(<1..625)
                     /locus_tag="VFX26_05650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetoin utilization protein AcuC"
                     /protein_id="HEX5573995.1"
                     /translation="MCNTAVVIGKELSNYSFGGKHPLNSSRLEAFWSKLTLSEAMRSG
                     SLKLLSPALADERTVSSFHENDYINFVKKSSVTGSGYLDSGDTPSFKGVFEASLYVVG
                     STLLALDTVINKTNGIVHAFNPIGGLHHARRNAAGGFCVFNDIGIAIMHARKKYNLKK
                     ILYVDIDAHHGDGVFYEFEDDPDILIADIHEDGSFLYPGTGFESETGL"
     gene            complement(1078..1593)
                     /locus_tag="VFX26_05655"
     CDS             complement(1078..1593)
                     /locus_tag="VFX26_05655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573996.1"
                     /translation="MPIITAQEQTSNCNMLLQLKDFNEVFEFVKSSVNSIYEMKRAGL
                     SLMLHRMPTRVGAYHVLGSNVIAVNSILLDLVKKYSTSNDEYNSYLFMVLLHEYLHSF
                     GILDEHKVRQMSLELCEKFFGEKRTVTVMAEDPLKIFPQLGLVSYDKFEFENKYEIIK
                     NFDNSNQTYIQ"
     gene            1713..2597
                     /gene="htpX"
                     /locus_tag="VFX26_05660"
     CDS             1713..2597
                     /gene="htpX"
                     /locus_tag="VFX26_05660"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc metalloprotease HtpX"
                     /protein_id="HEX5573997.1"
                     /translation="MALVWKGDAGLNARMMLSFVILGVLYIVFLSILHYLGVGYIPLA
                     IIASVMILAQWYFSDKIVLWSSGAKIVSKEEYPRLHEIVERLSTNDGLPKPKVAMVHS
                     PVPNAFATGKSPKSSLVAVTTGILDLLDNDELEAVIGHELSHVRSRDVLVLTLASVFS
                     TVAWYLVRFGLFGGLQTRNRNTAGTSAIVLLVAITTWVVSFLIIRAISRYREFSADRG
                     GAIMTGKPDKLASALLKISGKIKVIPPKELENVQKLNAFFIIPALSGTSIANLFSTHP
                     PVEKRVQKLMEMKSGANE"
     gene            complement(2685..3110)
                     /locus_tag="VFX26_05665"
     CDS             complement(2685..3110)
                     /locus_tag="VFX26_05665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5573998.1"
                     /translation="MNKYVHVLLVFAIVFTAMQLLAWSTAEAGKYPKLRADAGDDFKT
                     LENKEVKLDGSDSKGAFKKFVDFEWELVRVNGAKVQNNQPIEINNNDEKTASFMAPDV
                     PSGEVTYEFKLKVKDEVDREDDDIVTVHVLNQQAPVGPT"
     gene            3864..>4977
                     /locus_tag="VFX26_05670"
     CDS             3864..>4977
                     /locus_tag="VFX26_05670"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sialidase family protein"
                     /protein_id="HEX5573999.1"
                     /translation="MKVPSYYVFIITLLMMGSSTIAQGSGTETDEKEKPAERLNFVSE
                     TNNLTQNEDDSVYPQISSSSENIYIVWQESVGSYGTRNYDIFFKKSNDSGETFGSPIN
                     LSNNTGFSEHPQIASVGNIIYIVWVDDSSGEREIMLSKSSDSGKTFSKSTIISKNSMG
                     PYHVELAAEGQSVYIVWNSFDKEMHNIILLSKSDDAGKTFAELREIGIGDMETFPKIA
                     ADADEYFVTWDKKDDKDTEILFIKGHKNYDKIHNVTNLSKLNDEGIDGGESQVAANAD
                     HVLVAWTSNMPVDKKHVYVSSSINNGNDFGNSVRLSSINSSNVENIIIDGNSYIVWQD
                     NIYGNQDIFFTKSNMNGTNIDKPINVSNNTGISECPS"
BASE COUNT         1661 a          872 c          873 g         1571 t
ORIGIN      
        1 ctaagccggt ttctgattca aaaccagttc caggatataa gaaagaacca tcttcatgaa
       61 tatcagctat gagtatatca ggatcgtctt caaattcgta aaatactcca tctccatgat
      121 gggcatcgat atcaacatac aggattttct ttaaattata tttctttcta gcatgcatta
      181 ttgcaatccc tatatcattg aagacacaaa aaccgccagc tgcattcctt cttgcatggt
      241 gcagacctcc aatcggatta aatgcatgaa caatcccatt cgttttatta attacagtat
      301 ccagggccaa tagtgtagac ccgaccacat acaatgaagc ctcaaatact cctttaaagg
      361 aaggcgtatc tcctgaatcg agatatccag acccagttac tgaagacttt tttacaaaat
      421 tgatataatc attttcatga aaagaggata ctgtcctttc atcagctaga gcaggtgaaa
      481 gtagtttcaa actacctgaa cgcatagcct ctgaaagagt gagttttgac caaaatgctt
      541 caagtctgct agaatttagt ggatgtttcc caccaaagga ataatttgaa agctctttac
      601 ctatgacgac agcagtgttg cacattattt atttatgcaa gataatacta ttagtagatt
      661 gtcagagtcg ttcttccata aaatggattt caaggaattt ttctggtatg aaaaagtaca
      721 ctacaaaaca tgataaaaag tgcgatgatg acaggataag tgtatttaca aaattttcgc
      781 ttttcaaaaa tgctttatag tacaattgcg ctaatatagg cagatcaaaa tgtgctacga
      841 ttttgaaatc ccagagagga taaaacaaaa aagtagaaac cttgcagaaa aggaagagca
      901 agaaaaagag gaattagaac caattaaagt tccaaattaa gataatattt ttctctcttg
      961 ttctttcact attcttttat tttgtgaact aatcgaattc aaaaaatagt ggctttctga
     1021 attgaagtaa gacatagatg tataaccagg ataaaaaatg atattcattt ctttattcta
     1081 ctggatgtaa gtttgatttg agttatcaaa gtttttgatt atttcatatt tattttcaaa
     1141 ttcaaattta tcatagctta caagtcctaa ctgaggaaaa attttcaaag gatcttcagc
     1201 cataactgtt actgtgcgtt tttccccaaa gaatttttcg caaagttcaa ggctcatttg
     1261 tctaacctta tgctcatcca aaattccaaa actatgtaga tactcgtgta aaagcaccat
     1321 aaataaataa gagttgtatt catcgttgga agttgagtat ttctttacca aatctagcag
     1381 gatgctgttg acggcaatca catttgaacc taatacatga taagctccga ctcttgtagg
     1441 cattctatga agcatcaagc tcaaaccagc tcgtttcatt tcatatattg aattaacaga
     1501 ggactttaca aactcaaata cttcgttaaa atccttcaat tgtaatagca tgttacaatt
     1561 gcttgtttgc tcttgagcag ttatgattgg cacttgtact actttatatt ctcactttag
     1621 acctataaat gataggtcaa tttctcacta aaaggaaaac aaaatacact agattaatta
     1681 aggaaatatg caatgttatc gatacataat tcatggctct agtttggaag ggagacgctg
     1741 gtcttaatgc cagaatgatg ttaagtttcg tcattttagg agtactatat atcgtattcc
     1801 tgagcatact tcactatctt ggagtaggat atatcccact agccataatt gcatctgtta
     1861 tgattctagc acaatggtat ttctctgaca agatagttct atggagttct ggtgcaaaga
     1921 tagtatcaaa agaggaatat cctaggctac atgaaattgt ggaaagactt tccaccaatg
     1981 atggactccc gaagcctaaa gttgcaatgg ttcattcccc tgttcccaat gcatttgcga
     2041 caggtaagag tcctaaaagc tctctggttg cagtaactac aggtatttta gatctgttgg
     2101 acaatgatga gcttgaagca gtaataggcc acgaattgag ccacgtaagg agcagggatg
     2161 ttctagtatt aaccttagct agcgtttttt ctactgttgc ctggtatctt gttcgatttg
     2221 gattatttgg tggcttacaa accagaaatc gaaacactgc cggtacaagc gcaattgttc
     2281 tgctagttgc aataacaact tgggtagtaa gtttcctgat tattcgagca atttcaaggt
     2341 acagagaatt ttctgcagat agaggtggag caatcatgac cgggaaacca gataaattgg
     2401 cgagcgctct tctcaagata agtggcaaaa tcaaagtcat tccaccaaaa gaattagaaa
     2461 atgttcaaaa attgaatgca ttctttatta ttcctgctct ttctggaact tctattgcta
     2521 atctattctc cacacatcca ccagtggaaa agcgagttca aaaactaatg gaaatgaaaa
     2581 gtggagccaa tgaataaata aataaatagg tagatgaaac tggacctcag tttcatcgct
     2641 atagctactt tatttggttt ctaaatcagc gtctttctct agcgtcaggt aggtccaaca
     2701 ggagcttgtt ggttcagcac atgtacggtc actatatcat catcttctct atcaacttcg
     2761 tcctttactt tgagtttgaa ttcatatgtg acttcgcctg aagggacatc cggagccatg
     2821 aatgaagctg ttttttcatc gttattgttt atctcaatag gttgattatt ttgtaccttg
     2881 gcaccattta ctctgaccag ctcccattca aaatcaacaa attttttaaa ggcaccttta
     2941 ctatcggagc catctagttt tacttcttta ttttccaatg ttttgaaatc atcgcccgcg
     3001 tctgctctta atttaggata tttcccagcc tctgccgtac tccatgctaa aagttgcatt
     3061 gctgtaaata caattgcaaa aaccagcaaa acatgtacgt atttgttcat cctcataaaa
     3121 tgctatatct cctctaaata atcttttcgg tcaaatagtt tcaattatgt gcaatttagt
     3181 ttcaattttg tgcatttttt tagactaaaa aattacactc tataaaccca tacagttaat
     3241 gcaaatatct aaatgaatgt attgttcgat acttaaatta agaacatgat gttggacctt
     3301 ccttcacaca gattcttaac gggtaatttt ggttagcaaa gtagaaattt agatagataa
     3361 tcccttgagg aagaactgta catgttatat ttagtgaatt ctaaacaggc agtgatttat
     3421 tgaaaatcat gtaatggttt atccctatgt agctctattt tcttcctaac ttctgccttg
     3481 tgttttttca agatgtgttc attagcacaa ttgtcgtgca ttataccaat ttcgcaaaat
     3541 tcacaggaag taacgaagtc tttatcgttt aaaattctct tacaggattt acaaaatttt
     3601 gtttcaatat catagattga gaggggtttt aaccaaggat cgcgccaaag tacactcacc
     3661 attaactatg aaatttgaca tatattattt attctttgat tgaaattaga atatctgtga
     3721 catgctccaa taatataagc agttataatt tctccgcccc attaacttca gctttgattc
     3781 aagtatttga ctcagcaata taatggtcaa tggatgattg tgatgtacag ataaatatct
     3841 agaaagacat accatcatta attatgaaag tgccttcata ctatgtattc ataattacat
     3901 tacttatgat gggatcatct acaattgctc aaggaagtgg tacagaaact gacgaaaagg
     3961 aaaaacccgc cgaaagactg aactttgtca gtgaaacaaa caatctaact caaaatgaag
     4021 acgattctgt atatccacag attagctcat catcagagaa catatacata gtttggcaag
     4081 aatctgtagg cagctatgga actagaaatt atgatatatt ttttaaaaaa agtaacgaca
     4141 gtggtgaaac ttttggctca cccataaacc taagcaataa cacaggattt tcagaacatc
     4201 cacaaatcgc aagtgttgga aatattatct acattgtatg ggtagatgat tcatccggtg
     4261 aaagagaaat aatgctctct aagagctctg acagcggcaa gacattttct aaaagtacta
     4321 taataagtaa gaattcaatg ggtccatatc acgttgaact tgcggcggaa ggacaaagtg
     4381 tctacatagt atggaatagc tttgataaag aaatgcataa tattatctta ttaagtaaga
     4441 gcgatgacgc aggcaaaaca tttgcagagt taagggagat cggcattggt gacatggaaa
     4501 cgtttcccaa aatagcggca gatgcagatg aatatttcgt aacatgggat aaaaaggacg
     4561 ataaagatac agaaatctta ttcattaaag gtcataagaa ctatgacaaa atacataatg
     4621 tcactaacct tagtaagcta aatgatgaag gtatagatgg tggagaaagt caagttgctg
     4681 caaatgctga ccatgtgtta gtagcctgga ctagcaatat gccagttgat aaaaaacatg
     4741 tttatgttag tagtagtata aataatggta acgattttgg aaacagcgtt cgtctgtctt
     4801 cgatcaactc gtcaaatgtt gagaatatta tcattgacgg taattcatac attgtatggc
     4861 aggataatat atatggcaat caagatatct tctttactaa aagtaatatg aatggaacca
     4921 acatcgataa gcccataaat gtgagtaaca ataccggaat ctcagaatgt ccatcta
//
LOCUS       DASUMD010000208         2129 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_76429, whole genome shotgun sequence.
ACCESSION   DASUMD010000208 DASUMD010000000
VERSION     DASUMD010000208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2129)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2129)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2129
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76429"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            437..775
                     /locus_tag="VFX26_05675"
     CDS             437..775
                     /locus_tag="VFX26_05675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574000.1"
                     /translation="MTERELKLKLTASERQFREIKYYFSLLHPESIVSGLKFAYNRQK
                     AQDGGYLIVGRKSFVKKETSMLTKEQARWRLANWKSMIKIYRNKGYSYPTISRIKKDI
                     KLIAKSGNKK"
     gene            complement(780..1427)
                     /locus_tag="VFX26_05680"
     CDS             complement(780..1427)
                     /locus_tag="VFX26_05680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="Snf7 family protein"
                     /protein_id="HEX5574001.1"
                     /translation="MSFKDKWNKTQPENMAVKILESIKSQPPLKPRIEEAQKKLELQI
                     SKLDGISTKIVEKDQLIFKRIVHSIQNHDAQYAKLLSNELSQIRKMSKMVDSAKLALE
                     QIQLRLNTITELGDVVVTLTPAMSVIKNIQGGLSSMVPEADQSLSQISDLMGGILSDS
                     AQIPKHEVDNGRVLSEESTSIIEEATTLVEQSMKEKFPDLSSIRIDEKSTEASTY"
     gene            complement(1533..1793)
                     /locus_tag="VFX26_05685"
     CDS             complement(1533..1793)
                     /locus_tag="VFX26_05685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574002.1"
                     /translation="MANEEIKVNDNVYKVTINDQTRMYAMKLNRLYQQGFNDVDSFDE
                     ISSEISNTINNLLKNGLSPEVREEDMDGAVKQLLHMFDKSKK"
BASE COUNT          661 a          357 c          363 g          748 t
ORIGIN      
        1 ggtatttttg tacatccaat gagatttccc accgttaaga gaggaagtgc cgtattaaga
       61 ctttcgttaa gtgcatcgca taccaagaaa caattggatt atgctcttaa cgaactagaa
      121 aaaataggta agaaacataa agtcatttga tcttgttgat agtatcattt tatttctaca
      181 ttagttttaa ccaaatcatg aatatccatg cacaattgta agaataaaat tgttactcaa
      241 ttcgtaaccc ccgatattaa aaataccttt aaagaactgt acattttggc ttatataaaa
      301 tattgcagaa ttcgaattgt gcaatatcta tttagaatag aattttcatt atgaaaaata
      361 tttccgctat ggatttgcat atttcataat tcgaatttag caatatttat ttaatatgat
      421 ttgcaaatga tcaataatga cagaaagaga attaaagctc aaattgacag catcagaacg
      481 tcaatttagg gagataaaat attatttctc tcttttgcac ccagaatcaa tagtttcagg
      541 gctaaaattt gcgtacaata gacaaaaggc acaggatggt ggttatttaa ttgttggaag
      601 aaaaagtttc gtaaaaaaag aaactagcat gttgacaaag gaacaggcta ggtggcgact
      661 tgcaaactgg aagtcaatga taaagatcta tagaaacaaa ggatatagct accctacgat
      721 tagtagaatt aagaaggata tcaaattaat agctaagtca ggcaataaaa aatagggatt
      781 tagtaagtag aggcctctgt acttttttca tcaatcctaa tggatgaaag gtcaggaaac
      841 ttctctttca tgctttgttc aactagagta gtagcttctt cgataatgct tgttgattct
      901 tcgcttaata ctcttccgtt gtctacttcg tgtttaggaa tctgtgcaga gtcagataat
      961 attcctccca tgagatcgga tatctgagag agtgattgat ctgcttcagg aaccattgat
     1021 gataagcctc cttgtatgtt ctttattaca gacattgccg gggttagcgt aaccacaaca
     1081 tctcctaatt cagtaatagt gtttagtctt aattgaattt gttccaatgc taacttggca
     1141 gaatctacca ttttgctcat cttgcgaatt tgggatagtt catttgaaag taatttagca
     1201 tattgggcat catgattctg gatcgaatgt acaattcttt taaaaataag ctgatccttt
     1261 tctacaatct tcgtagaaat tccatctaac tttgagattt ggagctctag tttcttttga
     1321 gcttcctcaa ttcgtggctt tagaggaggt tgtgacttga tactctccaa aatttttacc
     1381 gccatatttt ctggctgcgt tttgttccac ttgtctttaa aggacattgt tttctctaaa
     1441 gcctatcact ttttttgtta ataagatcaa atgtaaccaa tgtcagtaga gcagtagtta
     1501 ccaaagagaa ttctagattg gggatttttt actcattttt tggatttgtc aaacatatgt
     1561 aatagctgct tcaccgcccc gtccatgtct tcttcacgca cttctgggga taagccattc
     1621 tttagaagat tgtttatggt attagaaatc tcagagctta tttcgtcaaa actatcaacg
     1681 tcgttaaatc cttgttgata gagcctattg agcttcatag catacatcct agtttgatca
     1741 tttatcgtga ctttatacac attgtcattc actttaattt cctcgttagc catggtggtt
     1801 atcaatggaa atgaccatga tcctctaaga aaaatgtttt ggtattaccc tctaatcgta
     1861 ttcgttggat aactctatat ctagtaaatg ccagtttcaa tctctatttt tcattaatat
     1921 acatagttca gattgctaat tcggcaagtc ctaacttatt ctgataaaat tgatttgagt
     1981 tttttgatca ttttctcacc ctcggttgtt agtgaatagt atctgacagc cattggtctt
     2041 gtttttgaag aagtcattaa accatattca ctagcaacca atccggcttt ttctaattta
     2101 gacaagtgaa atgaaataat ctttctatc
//
LOCUS       DASUMD010000209         5954 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_76895, whole genome shotgun sequence.
ACCESSION   DASUMD010000209 DASUMD010000000
VERSION     DASUMD010000209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5954)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5954)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5954
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76895"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            259..1749
                     /locus_tag="VFX26_05690"
     CDS             259..1749
                     /locus_tag="VFX26_05690"
                     /inference="COORDINATES: protein motif:HMM:NF014805.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin carboxylase N-terminal domain-containing
                     protein"
                     /protein_id="HEX5574003.1"
                     /translation="MKLLIANRGEIVSRIVKSCTKLDIIPCGVYSEADKNSIYVKFLY
                     EALNIGGLAASDSYLRMDKMVDAALQLGCDMIHPGYGFLAENPEFSDVCKRKGIIFVG
                     PSPQVLKISGDKLRAKQVVSRIAPVLEAKEVSTQEEALKVAKEIGYPVILKAARGGGG
                     RGLRIASSQEDISKVFESSRKESMISFASDRLFIEKYLERPRHIEVQILGDGQNIINL
                     GERECSIQRRHQKLIEETPSLALTKDMRQRITNTAIDIMKEMKYDNAGTVEFLFKDEQ
                     FYFMEINSRIQVEHPITEQVTGIDLIEQQLNIASGTGLEIKQEDVRARGHAIECRINA
                     EHPLTFIPFAGTIKSFVPPYDTKNVRIDTALSSGSIIPPFYDSLIAKLICFEDSRIGT
                     IETMKRSLSMFRISGIPTTIPFHISALNDTRFMEGMYDTSFVDELTPFSLEDGEVASA
                     ILCQLPRKVKFLEKKGNSNADIWIKSRYSDSNFDQYLSNSRWLHES"
     gene            1739..2170
                     /locus_tag="VFX26_05695"
     CDS             1739..2170
                     /locus_tag="VFX26_05695"
                     /inference="COORDINATES: protein motif:HMM:NF012584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HEX5574004.1"
                     /translation="MRVKVNGNDYDIKIIGQNVIVNGNQITAKFDEDQITIEGKKFYL
                     DYIEDSDPSLMIVNGMAYIVSKNSDLTVSMKELRAPISGRIIEVLVKAGDEIKKGQQI
                     VVLEAMKMQNHIYSPDTAKISELRVKEGQTVKTGEILATFR"
     gene            complement(2209..2784)
                     /locus_tag="VFX26_05700"
     CDS             complement(2209..2784)
                     /locus_tag="VFX26_05700"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEX5574005.1"
                     /translation="MKLDEDIDLMGPVTQVLEQNIAILDDSACINEAAKEMQRKGVSS
                     VLVRNSNSGELVGIVTERDIIYRAVAKNLGMFKVNIGKIMSSPLITVDKDTPCIEAIK
                     IMREKQLRRLPTLDHGSILGVATLMSIVGNMPTRNVELIELEKPQTSQSPVLNCPYCE
                     SKFADKMELSKHIDRIHLGSGLLEGDLRKWK"
     gene            complement(2974..3996)
                     /gene="gap"
                     /locus_tag="VFX26_05705"
     CDS             complement(2974..3996)
                     /gene="gap"
                     /locus_tag="VFX26_05705"
                     /inference="COORDINATES: protein motif:HMM:TIGR01534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0019682 - glyceraldehyde-3-phosphate
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HEX5574006.1"
                     /translation="MVAKIAINGFGRIGRCFLRAAMADKEFGNIANIVAINDLTDAKT
                     LAHLFKYDSTFRKYEGRVEAKDNEILVDEHSLKVLAEKDPLKLPWKDLKIDIVIESTG
                     KFNDANEAKKHITAGAKKVIISAPANSPDATVLIGINDNLYDNTKHDVISMASCTTNC
                     LAPLLKTINDKFGIERGYMTTCHAYTNDQRILDLPHKDLRRARAAMMSIIPTSTGAAK
                     AIGAVIPALKGKMDGMALRVPVSNGSIVDVVLTLHKDVTKEQVNQALKDSSDSDLKGI
                     MAYTEEPLVSSDIIGESHSSIVDGLSTMVLGTKGNLVKILSWYDNEWSFACRLIDLVK
                     FICNKM"
     gene            complement(4164..4295)
                     /locus_tag="VFX26_05710"
     CDS             complement(4164..4295)
                     /locus_tag="VFX26_05710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574007.1"
                     /translation="MAADNKNDYCTKSPLEKKRRINIVRNAIRTFIQKSNADFVARR"
     gene            complement(4437..4859)
                     /locus_tag="VFX26_05715"
     CDS             complement(4437..4859)
                     /locus_tag="VFX26_05715"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEX5574008.1"
                     /translation="MYKDLKINFILVAVDGSENSKRAGDYAIKLGQELHADVMALHVI
                     PSSKHFPEENLAKGTKHDYAYLDKIAEQSVSAGVDLEIEVIRAQSSVVNEITEYADKK
                     NIDLIIIGIRSVSEFRFMLGSTASGVVVNAPCPVLVVK"
     gene            5033..5488
                     /locus_tag="VFX26_05720"
     CDS             5033..5488
                     /locus_tag="VFX26_05720"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEX5574009.1"
                     /translation="MAIRRILVAVDGSRPSMDASIQAIDIAKRYDAELIALYVVSQDI
                     RYNYLEDVITPKLPRALKDVMMIAMQKGGRHVDKVKQKASEKNVKVKTDIVIGTSSVV
                     KEIIEYAEKNRVDMIVIGSRGLSGIKKVLLGSVASGVLIYSHCPVLVTK"
     gene            complement(5687..>5954)
                     /locus_tag="VFX26_05725"
     CDS             complement(5687..>5954)
                     /locus_tag="VFX26_05725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574010.1"
                     /translation="SFYSVIIASTLIGVWITFSHISPIQALILAAVINAVVTVPILFI
                     VMRLANDRKILEDKINSRFSNIIGWLTFAIMTVSVIVMFLSFII"
BASE COUNT         1913 a         1090 c         1097 g         1854 t
ORIGIN      
        1 agaaccggaa cagacacgtc ctagattgat atcttctctc aagtcaattt ataaaaaaag
       61 gatcggtagg ccgctcagaa aacatggtaa tattcctgtt taggcctact tattttgttc
      121 cgttgaaaag tagccaaacc ctacaacata atttaaatct ggaattccat tactgctact
      181 tctaaattac ttatgaaatc tgcaaatgat gtaattaaga aaccattttt taatggcttt
      241 gactgaaaat attaaaacat gaagctactc atcgcaaaca ggggagaaat cgtatcaaga
      301 atagtcaaga gctgtacgaa acttgacata attccttgcg gggtatattc tgaagcagac
      361 aaaaattcta tttatgtgaa attcctttac gaagccctga acataggagg attggcagca
      421 agtgatagct atctgagaat ggacaaaatg gtagatgccg ccttgcaatt ggggtgtgat
      481 atgattcatc caggctatgg atttcttgct gaaaatccag agttctctga tgtttgcaaa
      541 agaaagggca tcatttttgt cggcccctct ccacaagtat tgaaaatttc tggtgataaa
      601 ctgagagcta aacaagttgt ttccagaata gcacctgtct tagaggcaaa agaagtttcc
      661 actcaagaag aggcattgaa ggtagccaag gaaataggat atccagttat attaaaggcc
      721 gcaaggggcg gaggtgggag agggcttaga attgctagct cgcaagagga cataagtaag
      781 gtatttgaat catctagaaa agaatcgatg attagctttg catcagaccg cctgtttatc
      841 gaaaaatatt tggaacgtcc tagacacata gaagtccaga ttcttggaga tggtcaaaat
      901 ataataaatc ttggagagcg ggaatgctcg attcaacggc gccatcaaaa gctgatagag
      961 gaaacaccgt cgctggccct tacaaaagat atgagacaga ggatcactaa caccgcaatt
     1021 gacataatga aagaaatgaa atatgataat gcaggaacgg tcgaatttct atttaaggat
     1081 gagcagtttt attttatgga gattaattct aggattcagg tagagcatcc cattactgag
     1141 caggttacag gtatcgatct aattgagcaa cagctaaata ttgcctcggg aactggtctg
     1201 gaaataaaac aagaagatgt aagggcaaga gggcatgcca tagagtgtcg aattaacgca
     1261 gaacatccct taacatttat tccttttgca ggtacaataa aatcttttgt tcctccatac
     1321 gatacaaaaa atgtaagaat agacactgca ttgtcctcag gtagcataat accaccattt
     1381 tacgattcgt taatagcaaa actcatatgt tttgaagata gcagaatcgg aaccattgaa
     1441 acaatgaagc gttctctctc tatgtttagg atttcaggaa ttccaaccac aattcctttt
     1501 catatctccg cgctaaacga tacaagattt atggaaggaa tgtatgatac gtcttttgtt
     1561 gatgaattaa ctccattttc attggaggat ggagaagtgg cgtctgctat tctatgtcag
     1621 ttgcccagaa aagtcaagtt tttagagaaa aaaggaaatt caaatgcaga tatctggatt
     1681 aaaagtagat atagtgactc aaattttgat caataccttt caaattcgag gtggttacat
     1741 gagagttaag gttaatggta atgactatga cataaagata atcggacaga acgttatagt
     1801 taatggaaac caaataactg ccaaattcga tgaagaccaa attacaatag aaggaaaaaa
     1861 attttattta gactacatag aagatagcga tccttctctg atgatcgtaa atggcatggc
     1921 atatatcgtt tcaaagaatt cagaccttac agtatccatg aaagaactta gagcgcctat
     1981 aagcggcagg ataatcgaag ttttggttaa agccggagac gagataaaga aaggccaaca
     2041 aatcgtggtt ctagaagcta tgaaaatgca gaatcacatt tattcacctg acacagccaa
     2101 aatatcagag ctaagggtga aagaaggtca aactgttaag actggagaga ttcttgctac
     2161 atttcgataa attcaattct cgttctggag atgtaaaggc actggttgtc acttccattt
     2221 tcttaggtct ccttctaata agccgcttcc caaatgtatt ctgtctatat gtttcgacaa
     2281 ttccatttta tcagcaaatt ttgattcgca atacggacaa tttaaaactg gactttgtga
     2341 agtttgtggc ttttctaatt cgataagttc tacattccta gttggcatat ttccaacaat
     2401 cgacattaat gttgcaacgc ctaatatact tccgtgatcc aatgtgggta gacgtcgcaa
     2461 ttgtttttct cgcattattt tgatagcctc aatacatgga gtgtctttat caactgtaat
     2521 gagtggactg ctcataattt ttcctatatt gaccttgaac atcccaagat tcttggcaac
     2581 agcacgatag ataatatccc tttccgtaac aattccaacc aactcaccgg aatttgaatt
     2641 tctgacaagg acgcttgaca ctcctttgcg ttgcatctcc tttgcggcct cattgataca
     2701 agcagaatcg tcaaggattg caatattttg ttctaatacc tgagtaacag gacccattag
     2761 atctatatct tcatctaatt tcaaactaac atgttagaga acacacattt attaaaagta
     2821 ttgtgtattt gagaagtctc accaggaagt aataattagt tcctttggct ttttcaattt
     2881 gaaaacatat acaagaaaaa tttgacccgg ttgattctgt gtctaaagtt tgttcgttac
     2941 ctttgtttct aacaattaat atcctttgag tcttcacatt ttattacaga taaattttac
     3001 cagatcgatt agtctgcaag caaaactcca ttcattgtcg taccatgaca agatcttaac
     3061 aagatttcct tttgtaccca gaaccatagt gctcaaacca tcaactatgg acgaatgcga
     3121 ttctccaata atatccgatg atactagcgg ttcttcggta taagccataa tcccctttaa
     3181 gtcgctgtct gatgaatctt ttagagcctg atttacttgt tcttttgtaa catccttatg
     3241 taacgttaag actacgtcaa ctatagatcc attactgacc ggaacacgta gggccattcc
     3301 gtccatttta cctttcaacg caggtattac tgcccctatt gccttcgcag cgcccgtgct
     3361 tgttggaata attgacatca ttgcagcacg agctcttctc agatccttgt ggggtagatc
     3421 gagaattctc tgatcgttag tatatgcgtg acaagttgtc atatatcctc tttctatccc
     3481 aaacttatca ttaatggtct taagaagtgg ggcaagacag ttggtcgtac aagaagccat
     3541 ggaaataaca tcatgttttg tgttatcgta tagattgtca ttgattccaa ttaaaaccgt
     3601 tgcgtcggga ctatttgccg gtgctgagat tattactttc ttggctcctg cggttatgtg
     3661 tttttttgcc tcattggcat cattgaattt acctgtagat tcaataacaa tatcgatttt
     3721 caaatctttc cacggtagct tcaagggatc tttttctgca agcactttta agctgtgttc
     3781 gtccacaagt atctcattat ccttagcctc aactctaccc tcatactttc tgaatgtcga
     3841 gtcatatttg aataaatgag cgagtgtctt tgcatctgtt agatcgttta tagcaactat
     3901 attcgcaata ttaccaaatt ccttatcggc catggccgct cttaagaaac atcttccaat
     3961 tctaccgaaa ccattgattg ctatctttgc taccatgaat attattgaac ggtcggtatt
     4021 ataagtagta atagcaatac actgcattaa gatcgcacat tgaacaatct gttgatagaa
     4081 aatgtctacg tagctgaaag ggcgaatatg atattcttac tgtggatgta tttccgataa
     4141 atgcttatag taataatctt ttatcatctc ctcgccacaa aatctgcatt tgatttttga
     4201 ataaaggttc tgatagcatt tcttacaata tttattcttc gttttttctc caacggtgat
     4261 ttcgtacaat aatcgttttt gttgtccgca gccactgcac tttcctaccc ctatcatcat
     4321 atattcataa ttaaagtata aataaaaggt ttcactgtca gctatcaaaa acttttcgga
     4381 tttaacttag cgatctcctt aaatggtaat ttatgaagga taattatagg attcctttat
     4441 ttaacaacta atactggaca aggtgcatta actacaactc cagaggcagt actaccgagc
     4501 ataaatcgga attctgaaac actccttata ccgatgataa taagatctat atttttttta
     4561 tccgcatatt ctgttatttc atttacgacg gaagattgcg cccgtataac ctctatttca
     4621 aggtcaactc cggccgaaac ggattgttcc gcaatcttat caagataggc gtaatcatgt
     4681 tttgttccct tagcaagatt ttcttcggga aaatgtttac tagagggtat aacgtgcagt
     4741 gccatgacgt ccgcatgaag ttcttgaccc aatttaattg cataatctcc ggctctcttt
     4801 gaattttctg aaccgtcaac agcgaccagt ataaaattta ttttgagatc tttgtacatg
     4861 tatattcctt gaattgatag tgcaaaggaa ctttaatttc tttatggata aagtatataa
     4921 cagcatcata tcttaatttg taaatcacct tagcatattg ctatcttgat tacaaaatta
     4981 aaaagatatc attactaaat atctatatag taataatact aaagcacatt aattggctat
     5041 tcggagaata cttgtagccg ttgatggttc caggccttct atggatgcta gcattcaagc
     5101 tattgacata gctaaaagat atgatgcgga attgatcgca ctatatgttg tctctcagga
     5161 catcagatac aattatctgg aagatgttat aacgccgaag ttacccagag ctctgaaaga
     5221 tgtaatgatg attgcaatgc aaaaaggtgg aagacatgtg gacaaggtaa aacaaaaggc
     5281 gtcagaaaaa aatgtcaagg ttaaaaccga tatagttatt ggtacctcat ccgtcgtaaa
     5341 agagatcata gaatatgctg aaaaaaacag agtagatatg atcgttattg ggagcagagg
     5401 tctttctggg attaaaaaag tgctattggg cagcgtagcc agtggagtac tgatatattc
     5461 acattgtcct gtattagtaa ccaaatgagt tcttgtcgaa ttaattctca accttaacct
     5521 aattattaaa acaatctggc gaattacaaa agaatgtcgg tatatgacag tacagctttt
     5581 ttctttctga aaaatgtaag gaatgttagg aattaacaat atcttcacat aacttgtatg
     5641 aatcccttct aaagcaacga taattgaaga atatcaattc caatgactaa atgataaatg
     5701 acaaaaacat cacaattaca gaaaccgtca taattgcaaa agtaagccaa ccaattatat
     5761 ttgaaaagcg gctattgatt ttatcttcaa gtatttttct atcgttggca agtctcatga
     5821 ctataaaaag aatgggaact gtgacaactg cgttaattac cgctgcgagt atcaaagctt
     5881 gtattgggct aatatgtgaa aacgttatcc agactccaat caaagttgaa gctattatta
     5941 ctgagtagaa tgat
//
LOCUS       DASUMD010000210         6554 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_963733, whole genome shotgun sequence.
ACCESSION   DASUMD010000210 DASUMD010000000
VERSION     DASUMD010000210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6554)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6554)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6554
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_963733"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..416
                     /locus_tag="VFX26_05730"
     CDS             <1..416
                     /locus_tag="VFX26_05730"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX5574011.1"
                     /translation="TILEMIDTIGGVVIMVSDQARAVKFYAEKVGFDIRLNVPFFGGK
                     WIEVAPKDSESTLSIMEPNPQLMPPEELEIARKNIGRNTGVWFYTSDIQSTYEDLKSK
                     GVDITKPEKQEWGGIMSLVKDLDGNIFTLLSSPEG"
     gene            complement(538..1275)
                     /locus_tag="VFX26_05735"
     CDS             complement(538..1275)
                     /locus_tag="VFX26_05735"
                     /inference="COORDINATES: protein motif:HMM:NF033484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004722 - protein serine/threonine
                     phosphatase activity [Evidence IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Stp1/IreP family PP2C-type Ser/Thr phosphatase"
                     /protein_id="HEX5574012.1"
                     /translation="MLLVSGHKSDKGLLRKNNEDSIYVNDKVGVYVLADGMGGYEGGE
                     MASNIAVNTIAKILYSAYTDRQNTNFQQIVHKALQKANEEIILFRKEDINLANMGTTV
                     VISIFLDEVFYYTHLGDSRAYLYKKEESLIQLTTDDSLVMEMVKQGMISEDELRTHNL
                     RHIVTRYLGTPELVFPELQRCDTEINDCIILCSDGLTNMLSNKEILSILRGNISMGPQ
                     SVCNALVDKANTNGGEDNISVIVIQNK"
     gene            complement(1559..2365)
                     /locus_tag="VFX26_05740"
     CDS             complement(1559..2365)
                     /locus_tag="VFX26_05740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase family protein"
                     /protein_id="HEX5574013.1"
                     /translation="MLGPDTSVFPQGKESLSIFLNTPFWIWDSYLHRFQYEKTNGCCC
                     FNHLLSLPSKDGIQYPLFDFQAIIFDTVERNQNVWIKKARGIGLTTFILRYLAWKILY
                     SSELDYKSIYIVSGSSDKSSEKVDRMLKKLFEKRFPLLRLESKFTDLWLKKTCIKLLE
                     PRDIMGFESYDTAYLFIDEADFLERSEQNELDHAASSFAGRSNCRTIMASTPNQPGSL
                     FEKIENDATSRYTKLQLDYIYGIDTIYDSKFIERKKLDPEFEREYNIKYE"
     gene            complement(2505..3155)
                     /locus_tag="VFX26_05745"
     CDS             complement(2505..3155)
                     /locus_tag="VFX26_05745"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEX5574014.1"
                     /translation="MKHSTEKYFIYSTLGLKPTEQKVKVLGIGSSMRKNSFSTNTLKN
                     VLEIISVKYKTEARLLNLLETELPMYRPSTRFENESVKKITSDVNWANVFVLASPDYH
                     GSMSGTMKNFLDFFWKEFSGKTFGYIVSSHEKGLTVMDQMRTAVRQCYAWSLPYGVSI
                     NERDDLDSNGLIVSKKLQSRMEMLARDLVVYGGLIYWQFTKDLDSSEPNTFAHYYL"
     gene            3245..4039
                     /locus_tag="VFX26_05750"
     CDS             3245..4039
                     /locus_tag="VFX26_05750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574015.1"
                     /translation="MLKSNLRSRYDDRKKDRIGLAPIHVSDILPSSCIRKQYYSRVYS
                     DEDPITDESIHHFVRGESSEFAITHLAKIGVAQAELQMDEIVAHPDIMDNTDGRMVII
                     ELKDTVAGKRLDINDYTFRSYLRQLLYYLIMTGIEKGIISIRYNIKELRLIKRDDTGE
                     YYFRPKDARPPGIESWSVNLPKDDITRELLRNEMVLRKNILVSALENHDVTILPRVTE
                     PLKSSKCPSCPFYSRCYDEMENERALDIAQQTDILDIRGTVDFRPF"
     gene            complement(4157..4732)
                     /locus_tag="VFX26_05755"
     CDS             complement(4157..4732)
                     /locus_tag="VFX26_05755"
                     /inference="COORDINATES: protein motif:HMM:NF012573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005509 - calcium ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HEX5574016.1"
                     /translation="MTNAETIMCRNDKTDKSCKGSERTDVLVGNKNSNKMNGLQGTDY
                     ILGLFGNDYIIGHNGSDTLVGGAGNDVLHGGGNKDALMGSTGNDNMTGGYGADEAIGG
                     EGNDTILGGNGPDTIIAGQGNDFIVGGPGIDEISAGADDDKIYTANRNTTESDNAKDT
                     VYCGDGNDEVWINTSMDEDEVNKDCEILHEG"
     gene            5078..5440
                     /locus_tag="VFX26_05760"
     CDS             5078..5440
                     /locus_tag="VFX26_05760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574017.1"
                     /translation="MTTYLTPVVLITLTLTMVSIHGMMERIYAIEQPSTMEGINEEEC
                     DKVVNCKIISENVIKYHDRVDPFDKNEDISMAEMNNINDSQKMAEKSCQKLMGVDIEK
                     INNQQIGEQTPNFLICLP"
     gene            complement(5559..>6554)
                     /locus_tag="VFX26_05765"
     CDS             complement(5559..>6554)
                     /locus_tag="VFX26_05765"
                     /inference="COORDINATES: protein motif:HMM:NF016765.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574018.1"
                     /translation="LDRPELWSGKSLEQIINYRINLLKGTMIHNVNKISGRYIESLQE
                     MALSKRVVESIMTFEKIPSQYLNEMTLTKDESEEIPTIFSAPVSEIKILPSTVDQKIE
                     KKYYDDDSYAADAVVELYENSIDMTRISKVLSMGMLGRKKNRKLVPTKWSITAADDIV
                     SQYLLNKIKDNAILDNYLVFAFNHLANYYSVIFIPDDVWYFEMIESWIDTNGRVHIGS
                     DYESGKKIDHYPSIAGAYFAARLAAAEYLFKKRKKASVLILREIHPEYFVSLGVWQIR
                     EGLRECLRSKARNFESFDSAFKYGVSKTSLSKNEWIKNSSIIKNIEQKRISDYLD"
BASE COUNT         2078 a         1225 c         1078 g         2173 t
ORIGIN      
        1 aaacaatttt ggaaatgatt gatacaatag gtggagtagt cataatggtc tcagaccaag
       61 cacgggcagt aaaattttat gcagaaaaag ttggttttga tattagactt aatgttccct
      121 tttttggtgg aaaatggatt gaggttgcac ccaaagattc ggaatcgact ttgagtatta
      181 tggaaccaaa tccacaactg atgcctcctg aagagttaga aattgccagg aaaaacatag
      241 gaagaaacac gggagtgtgg ttctatacct cagatattca atcaacgtat gaagacctta
      301 aatccaaagg cgttgatatt accaaaccag aaaaacagga atggggtggc ataatgtcgc
      361 ttgtaaagga tcttgatggt aacatattca ctctgttatc atctccggag ggttgatttc
      421 gttatgttca caattccata gcaacaattc gtcaaaaaaa gcaaaccgaa ttgagaatcc
      481 gaaattccga aatatctttt tgattttgat tctagctaat tttccgtttt gagattttta
      541 tttattttgt attacaataa cactaatatt gtcctcacca ccatttgtat ttgctttatc
      601 aaccaaagca ttacagacac tctgtggacc cattgaaatg ttacccctta atatagacaa
      661 tatttctttg ttactcaaca tattggtaag accatctgaa caaagaataa tgcaatcatt
      721 tatttcggtg tcacagcgct gtaattcagg gaacactaat tcaggggttc ccaaatagcg
      781 tgtaacaata tgacgtagat tgtgtgttcg aagttcatct tcacttatca taccttgttt
      841 taccatttcc attactaaag aatcatcagt ggttagttga attagactct cttctttttt
      901 atacaaataa gccctactgt ctcccaaatg agtataataa aaaacttcat caagaaatat
      961 ggatattact actgttgttc ccatattcgc tagattaata tcctcttttc taaatagaat
     1021 aatctcctca ttcgcttttt gcagggcttt gtggactatt tgttgaaaat tcgtattttg
     1081 gcggtctgta taagcagagt atagaatttt tgctatggtg ttcactgcaa tgttacttgc
     1141 catctcaccg ccttcatatc cgcccatccc atctgctaaa acatatacac ctactttgtc
     1201 atttacataa atagagtctt cattattttt tcgaaggagc cctttatcag atttatgacc
     1261 tgatacaagc aacatatttg atttagtaga aaatgatatt taaatgaata acatctacaa
     1321 ttgtgataat tgcgcaactc taacggtatc aaaatcattt aaaaaggaag atggttgttt
     1381 ctcttgaagg agcattacta ttcttatttt gcctacctgt aactagaaaa taatttgata
     1441 tttagatgcc atagaattat ttactattct ttaaaactct tgataatgaa tatttgctac
     1501 agatacactt actagtattt tagaatgaca tatgatacta attggaggta tcgcgatttt
     1561 attcgtactt tatattatat tccctttcaa actcggggtc taatttcttc ctttcaatga
     1621 acttgctatc atagattgtg tcaattccat agatataatc cagctgcaat tttgtatatc
     1681 ttgaagtggc atcattttct attttttcaa acaaacttcc gggttgattg ggagtcgagg
     1741 ccataattgt cctgcaattg cttcttcctg caaaagacga agctgcgtgg tctagctcat
     1801 tctgctctga acgttccaaa aaatctgctt catctataaa taaatatgct gtatcatatg
     1861 attcaaaacc cataatatcc cttggttcca atagtttgat gcatgttttt tttaaccata
     1921 aatcagtaaa ttttgattct agtctaagga gagggaatct tttttcaaat aatttcttta
     1981 acattctatc tactttttca ctagatttat cactactacc tgagactatg tatatcgatt
     2041 tataatctaa ctccgatgaa tacaggattt tccaagcaag atatctaaga atgaaggtag
     2101 taagaccaat tcctcttgcc ttctttatcc aaacattctg atttcgttct acagtatcaa
     2161 agataattgc ctgaaaatca aacaagggat attgtatgcc atctttactg ggcagagaca
     2221 aaagatgatt gaaacagcaa catccatttg ttttctcgta ctgaaacctg tgtaagtagg
     2281 agtcccatat ccaaaatggc gtattcaaga agatagatag actctctttg ccttgtggaa
     2341 agactgaggt atctggacct agcatttctt tgtctcccaa gcctgctcta tttgcgctta
     2401 taatagaagt tcctaaacaa agttaactga ttggtatagt ctttttattt atctcattgc
     2461 catgatgaaa aatttgacca gtgttctagg ttctactttc taatctagag gtaataatgt
     2521 gcgaaggtat tgggttctga tgaatctagg tccttcgtaa attgccaata aattagtccg
     2581 ccgtatacaa ccaaatctct ggcgagcatt tccattcgtg attgtaattt tttgcttaca
     2641 atcagaccgt ttgagtctag gtcatctcgc tcgttaatcg aaacaccata tggtagactc
     2701 caagcatagc actgccttac tgctgtcctc atctgatcca tcacagttaa tcccttctcg
     2761 tgtgatgaga ctatgtaccc aaaggttttt cccgaaaatt ccttccagaa aaaatctaga
     2821 aagtttttca tcgtccctga catggaccca tgataatcag gtgaagccaa gacaaataca
     2881 ttagcccaat tcacatcgga tgtaatcttt ttgacacttt cattttcaaa tctagtgctg
     2941 ggtctgtaca taggcagctc agtttctaat agattcaaca gtcttgcttc agtcttatac
     3001 ttgacagaaa taatttcaag gacatttttc agagtattag tactaaagga attttttctc
     3061 atactgctcc caatgcccag gactttaact ttttgttccg taggttttaa tcctaatgtg
     3121 gaatatataa aatatttttc agtagagtgc ttgattaaat aatataacta ttaagacgcg
     3181 ttatatcaat aatattcagt aatttatgcc aatagtcata cgacctgatt cagaattcac
     3241 aaacatgtta aaaagcaatt taagatcaag atacgatgac agaaaaaaag ataggatagg
     3301 tctagccccc atccatgttt cagacatact accgagttcc tgtataagaa agcaatacta
     3361 ttcgcgagtt tattcggacg aagaccccat cactgatgaa tccatacatc atttcgttag
     3421 gggtgaatca agtgagtttg ctattacaca tcttgcaaaa attggtgtag cacaagccga
     3481 gttgcaaatg gatgaaatag ttgcacatcc tgacatcatg gataatacgg atggaagaat
     3541 ggtaataatt gaactgaaag atacagttgc cggtaagcga cttgatataa atgattatac
     3601 ctttcggtcc tatttaagac aacttcttta ttatctgatt atgacaggta ttgaaaaggg
     3661 catcatttca attagatata atatcaagga attaagattg ataaagaggg atgatactgg
     3721 agaatattac tttagaccaa aagatgcaag gcctcctgga atagaaagtt ggtcggtaaa
     3781 cctccccaag gatgatatca cgagagagct attgcgaaat gaaatggtgt tgagaaaaaa
     3841 tatacttgta agtgcactag agaatcatga cgtgacaatc cttcctagag tgacagaacc
     3901 gttaaaatca agtaaatgtc caagctgtcc tttttacagt aggtgctatg atgaaatgga
     3961 aaatgaaagg gccttggata tagcacaaca gactgatatt cttgatatcc gtggcacggt
     4021 agattttaga ccattctagt agttgtgaaa tctaccaaat agtccattaa cttagtaaga
     4081 ttcgtaccaa aaaaaatctt gtttctctcg attcaaaata attgcaacat gaactaacca
     4141 attcaggtac taaaaatcat ccctcgtgca atatttcgca atccttattc acttcatcct
     4201 catccatgct ggtatttatc catacttcat catttccatc cccacagtaa acagtgtctt
     4261 tagcgttatc tgattcggtc gtgtttctat ttgcagtata gattttatca tcgtctgctc
     4321 cagcacttat ttcatcaatc ccaggaccac ctacgataaa gtcattgccc tgtcctgcta
     4381 tgatggtatc aggaccatta ccacctaaaa tcgtatcgtt accttcacca cctattgctt
     4441 cgtctgcacc ataaccacca gtcatattat catttccagt acttcccata agggcatctt
     4501 tgttccctcc tccgtgaaga acatcgttac ctgccccacc tacaagggta tcgctaccat
     4561 tatgtccaat tatgtaatca ttgccgaaga gtcccagtat gtagtcagta ccttgaagtc
     4621 cattcatttt attagaattc ttattgccga ctaaaacatc tgtccgttcc gatcctttac
     4681 aagatttatc ggttttgtcg tttctacaca ttatagtttc tgcgtttgtc atgttatagt
     4741 atgatgataa aaataaaatg cttgctaaca caaacaaaag gaaaattctt attggatact
     4801 taccagtcgc tagaaagtcc tgaaaaagcc gattttcatc taccaattgg cgatattcaa
     4861 tcttagcgac gaacaagatg tatttttcat caattgtgaa taaaaatata catcttgatt
     4921 aaaactggga ctccaagtag cagaaaattg ataattgaat aatacgtcgt ataacataac
     4981 aattaactgt aactttctat tacattcagc tgacctaaat ttattaatga taatttagtc
     5041 caaattcaat taaatagcga gagatacaaa tattcacttg actacctatc taacacctgt
     5101 agttctgata acattaactc taacgatggt ttcaatccat ggtatgatgg aaagaatata
     5161 tgccattgaa cagccaagca caatggaagg cattaatgag gaagaatgtg acaaggttgt
     5221 taactgtaaa attatatcag aaaacgtaat taaatatcat gatagagtgg atccgttcga
     5281 taagaacgaa gacatttcca tggcagagat gaataatatc aatgattctc aaaaaatggc
     5341 agaaaaatca tgtcaaaaat tgatgggtgt tgatatcgaa aagataaata accaacagat
     5401 tggcgaacaa actccgaatt tcttaatttg cttaccttaa attattttta gaattgtgga
     5461 tacttcgtga aaataaatgc atatgttaat tatctagggc aataagtcta tgtaattttt
     5521 aactgacaac tgacaaaaag agttattttc aatattccct aatcgagata gtcagaaatc
     5581 cttttctgtt caatgttctt gataattgaa ctatttttta tccactcgtt ttttgacaat
     5641 gaagtcttgg aaactccata tttgaatgct gaatcaaaac tttcaaagtt ccttgctttc
     5701 gatctgagac attctcttaa accctctcta atctgccaga caccaagtga cacgaaatat
     5761 tcaggatgta tttctctcaa aattaatacc gatgcttttt ttcgtttctt gaaaagatat
     5821 tcggctgcag ccaatcttgc tgcaaaatat gctccagcga tagaaggata atgatcaatt
     5881 ttttttcctg attcataatc tgatcctata tgtactctcc cgttggtatc gatccacgat
     5941 tcaatcattt caaaatacca aacgtcatca ggaatgaata ttacagagta ataattagcc
     6001 aagtgattaa aggcgaagac aaggtaatta tccaaaattg cattgtcctt gattttgttt
     6061 aagagatact gtgaaactat atcatctgcc gctgtgatgc tccacttagt gggtacaagt
     6121 ttacgatttt tctttctacc tagcattccc atacttaaaa cttttgagat gcgagtcatg
     6181 tcgatactat tctcatagag ttccacaact gcgtctgccg catatgaatc atcatcgtaa
     6241 tatttttttt cgatcttttg gtctactgtt gagggaagaa tcttaatttc actcacaggt
     6301 gctgaaaata ttgtgggtat ttcttcagat tcatctttag tcaaggtcat ttcatttaga
     6361 tattgtgatg gaattttttc aaaagtcatg atgctctcga caactctttt tgacaaagcc
     6421 atttcttgta atgattcgat gtacctacca gaaattttat tcacattatg gatcattgtt
     6481 cctttcaaaa gattaatcct gtagttgata atctgctcta aggactttcc cgaccataat
     6541 tcaggcctat ctag
//
LOCUS       DASUMD010000211         2427 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_743793, whole genome shotgun sequence.
ACCESSION   DASUMD010000211 DASUMD010000000
VERSION     DASUMD010000211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2427)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2427)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2427
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_743793"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(338..994)
                     /locus_tag="VFX26_05770"
     CDS             complement(338..994)
                     /locus_tag="VFX26_05770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574019.1"
                     /translation="MVKDLFVRDFDEKLHAKATQIATNDGITLASIVADAVDKWIKNH
                     EKSRHRHNLILYDNETTLNRLLDEIDKLASGNWFKSSCGSPKHYGMQYLNKRRWFDAT
                     VGNYDKLLENPQETGNKVLEIIGNKLGNKFPLTVAFLVEDLAREESVKKAVKFCEWYE
                     RKSLPGITYCIANTGNVISGSFDDLFDLFNVHNAVFLTKGNKLYKLRLDEEGFYSLLI
                     "
     gene            993..1970
                     /locus_tag="VFX26_05775"
     CDS             993..1970
                     /locus_tag="VFX26_05775"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX5574020.1"
                     /translation="MLFTIHLPLLKISRYLIEIQLNNRYLDILDMINIKNQTITVDGQ
                     TIFYREAGDKDKTPTILLLHGFPTSSHMFRNVIPALADKFHLVAPDYPGFGYSSMPPV
                     DRFEYTFDHLAEIVDKFVHQIGLEKYSLYVMDYGAPVGYRLAVKHPEKIEALIVQNGN
                     AYEEGLGEFWEPLRTYWSEPNERNKNALKKFLTLEATRWQYTHGVKNENAISPDNWIH
                     DQSLLDRPGNNEIQLQLFYDYKSNLPLYPQWQDYFRKYQPPALVVWGRNDIIFSKEGA
                     IPYQRDLKDVQIHLLNTGHFALEEEGELIVELISRFLLTHRKAAPWIEA"
     gene            1960..2289
                     /locus_tag="VFX26_05780"
     CDS             1960..2289
                     /locus_tag="VFX26_05780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574021.1"
                     /translation="MRPENMRFILSAKIPTEAGNLMVQDPKLLSKLETYMNKVKAEAT
                     YFFETDGNRVDAFIVDIQSADQIPVLVEPLFSGMGAHVELHPVMSLDDLKKGIPQAVV
                     EVNSYRD"
BASE COUNT          762 a          468 c          453 g          744 t
ORIGIN      
        1 ctgttagttg acatgcactg ttttccatat gtcccgcaaa atgatgcatg cctgtagaag
       61 gtacgtattg gtccgtatga aattttccca ttacaccaaa tattattttg tttgatataa
      121 ggtttaaaag tataattaga actggtggga ttaggacacg atactcagcg ctgtagtatt
      181 cctaagtatc atatttatta taataggact aatcctgttg attgtagaag ttcttgcaag
      241 gttgggatca agatctccaa cataaatatc gattgttgat taatttttta tcttaataga
      301 atctgaaaat caaattcgcc ccgatggact gtaatattca aataaggagc gaataaaatc
      361 cttcttcatc taatcttagt ttatataact tgttgccctt tgttaggaac acagcattat
      421 ggacattaaa caagtcaaac agatcatcaa atgatccgct gataacattg cctgtgtttg
      481 caatacaata agtaattcct gggagagatt ttcgttcgta ccattcacaa aactttactg
      541 ctttttttac tgattcttcc cgcgcaagat cttcaactaa aaaagcaact gttagaggaa
      601 atttgttccc tagtttattt ccaattatct ctaagacctt gtttcccgtt tcttgcggat
      661 tttctaatag cttgtcataa ttaccgacag ttgcatcaaa ccaccgtctt ttgttgagat
      721 attgcatccc atagtgtttt ggtgaaccgc aagaggattt gaaccaattg cctgaggcca
      781 atttatcgat ttcatcaagt aatctattca aagttgtctc attatcatac aatatcaaat
      841 tgtgtcggtg tcgacttttt tcatgatttt taatccattt atcaacagca tctgctacga
      901 ttgatgccaa agttatgcca tcatttgtag caatttgggt cgcttttgca tgaagttttt
      961 catcgaaatc tctaacgaat aggtccttta ccatgctttt tactattcac cttccattat
     1021 taaagatatc tagatatcta attgagatac aattaaataa tagatatctg gatatcttag
     1081 atatgataaa tatcaaaaat caaaccatca ctgttgacgg tcagacaata ttttatcgag
     1141 aggctgggga caaggacaag acacccacca tcctattact tcatggattc ccaacatcgt
     1201 cgcacatgtt caggaacgta atcccagcct tggcggacaa attccatcta gttgcgccgg
     1261 attatcccgg atttggatac agctccatgc ctcctgttga cagattcgaa tacacatttg
     1321 atcaccttgc cgagatagta gataaattcg tccaccagat aggattggaa aaatatagcc
     1381 tatacgttat ggactacggt gcgccagtgg gctaccgtct tgcagtcaag catcctgaga
     1441 aaatagaagc cttgatagtt cagaatggaa acgcatatga agaaggttta ggagaattct
     1501 gggaaccact caggacctat tggagtgagc ccaatgagag gaacaagaat gctcttaaga
     1561 aatttcttac cctcgaagct actagatggc agtatacgca cggcgtaaaa aatgaaaatg
     1621 caataagtcc tgacaactgg attcatgacc aatcgctact tgatcgtcca ggcaacaatg
     1681 aaattcagct tcaactattt tatgactaca aatctaatct tcctctttat cctcagtggc
     1741 aggattactt tagaaagtat caaccacccg cacttgtagt ttggggcaga aacgatatca
     1801 tattcagtaa ggagggggct atcccttatc aacgtgacct aaaggacgtg caaattcatt
     1861 tgttgaatac tggacatttt gcattagaag aagaaggtga actaattgtt gaattgatat
     1921 cgcgtttcct attgacccat cgtaaggctg ctccttggat tgaggcctga aaatatgaga
     1981 tttatattaa gtgcaaagat accaacagaa gccggaaacc taatggtgca agatccaaaa
     2041 cttttgagca aacttgagac atatatgaac aaagtaaaag ctgaagcaac atatttcttt
     2101 gaaactgatg gcaatagggt agatgccttc atcgttgata tacagagcgc agaccagata
     2161 ccagttttgg tcgagccgct gtttagtgga atgggtgctc atgtggagct ccatccggta
     2221 atgagcctcg atgacttaaa gaagggaata ccgcaagccg tggtcgaagt gaattcatac
     2281 cgggactaaa aatgatcatt ttgtatcatt caatttctaa tctttactaa aaatagaaat
     2341 aaaatagaag ttagtagaac cctaatacat gcaggattca aatcctttaa atccattcat
     2401 caccatagaa tggtcttctt tattaca
//
LOCUS       DASUMD010000212         4564 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1185140, whole genome shotgun sequence.
ACCESSION   DASUMD010000212 DASUMD010000000
VERSION     DASUMD010000212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4564)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4564)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4564
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1185140"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            139..834
                     /locus_tag="VFX26_05785"
     CDS             139..834
                     /locus_tag="VFX26_05785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574022.1"
                     /translation="MIGTLKLGLIAVVFLLFYPMVAINGQSMVHDVIKTKNSERFVVD
                     YNASNAYRRQPLVYNFSESIPTNWQLTIQNNLSYSGIEDAKSIVKIQEPAPSDKFIEL
                     AMFSEKTGKFWVAINTNESGYIRVYERDQDGWSRDQPIFVAHANNQGLTITNGKRIII
                     DKLSVDDFIVGSVSIYGKDELGGPNNSNSGTISFDILFGNPSESPLYYVPLITIIVIG
                     SIVLVLLIRKKRD"
     gene            complement(831..1457)
                     /gene="nth"
                     /locus_tag="VFX26_05790"
     CDS             complement(831..1457)
                     /gene="nth"
                     /locus_tag="VFX26_05790"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0140078 - class I DNA-(apurinic or
                     apyrimidinic site) endonuclease activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HEX5574023.1"
                     /translation="MQSTLRKNNLVRPTALKNLQTQEDGDPYKILIGTILSARTRDET
                     TAQVIKMLFSEFKNPDELSRADLKDIKKLIQKIGFYNVKATRIKEVSKILVEKYNSKV
                     PSNLEDLLTFPGVGRKTANCVLVYGFRKPAIPVDIHVHRISNRIGIVNTKKPEETEID
                     LQKSIDSRYWIGINETFVTFGQNICLPIKPKCNLCHLTKICKYYGNNN"
     gene            complement(1555..2286)
                     /locus_tag="VFX26_05795"
     CDS             complement(1555..2286)
                     /locus_tag="VFX26_05795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HEX5574024.1"
                     /translation="MGKRTLVRRRGRGGKQFQAIKTGKIVPAKYPKLQSSEQKIGSII
                     DIVHERGRDAPLAKIQFDKEFSYLPAPDGMAVGEKIQIGDNVDFKPKNILALEAIPDG
                     TLICNLERNIGDGGKLVKSAGSSALVFSHTSQGVSVKLPSGKFTTLNPRCKAMIGVVS
                     GAGRKEKPFLKAGNKAKYMTAHGKLYPTVRGIAQAAVYHPHGGGRHQHVGRQSSVGRT
                     TPPGRKVGNIAPRKTGRARVKEKKE"
     gene            2547..>4564
                     /locus_tag="VFX26_05800"
     CDS             2547..>4564
                     /locus_tag="VFX26_05800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDC48 family AAA ATPase"
                     /protein_id="HEX5574025.1"
                     /translation="MSQNTLSLKVLEAYTRDVGRGVARIDYDSMDSLTASTGDVIEIR
                     GKRRTVAKCLPLYPSDEGKGIVRVDGLVRNNAGVAIGDTVIVKKIKAVPAEKVIVAPL
                     EAIPPIDERYLADALESVPLIKGDNVMVPYFGGRLTFQVIGVTPASDAVLVTQKTIFH
                     IAEKGETLRGVPQVTYEDIGGLKEEIQKVREMIELPLRHPEIFEKLGIEAPKGVLLYG
                     PPGTGKTLLAKAVANESNAHFISISGPEIMSKFYGESEARLREIFKEAKEKAPSIIFI
                     DEIDSIAPKREEVTGEVERRVVSQLLSLMDGLEARGKVIVIAATNRPNAIDPALRRPG
                     RFDREIEIKVPDKRGRLEILQIHTRNMPLDTDVEQDRIAAVTHGFVGADLEYLCKEAA
                     MKCLRRLLPELNLEDEKLSPEVLNKLIVTKGDFENAVKEVTPSAMREVYLESPDVPWS
                     AIGGLEDIKRELQEAVEWPLRFPELYTKLGHAMPKGLLLHGLSGTGKTLLAKAVATES
                     EANFISVRGPELLSKWVGESERGIREIFRRARQAAPCVVFFDEIDSIAPVRGMGGDSM
                     VTERVVSQLLTELDGIQSLSGVVVLAATNRADIIDTALLRPGRFDKILLVPLPDKSAR
                     LKILEIHSKDKPLGSDVNLARIAELTDGFSGADTSSVINTAVSLVLHE"
BASE COUNT         1415 a          798 c          932 g         1419 t
ORIGIN      
        1 agattcaaaa gaagaattga gcggaaccat gattagaaaa atggtaaatt caggtaaaac
       61 accagaaaaa catttaatgc gtcctgaaat atctgattta attcttaaat cagaaaaacc
      121 atttgtagtt gaataatctt gatcggaaca ctcaaacttg gattaattgc agtagtattc
      181 ttattatttt atcccatggt tgcaattaat ggacagagta tggttcatga cgtaattaag
      241 acaaagaatt cggaaagatt tgttgtggat tataatgcat ctaatgctta tagaagacag
      301 ccattggtct ataatttttc agaatctata ccaaccaact ggcaattgac aattcaaaac
      361 aatttgtcct attcaggtat agaggatgcc aaatcaatag ttaagattca agaacctgcg
      421 ccaagcgata aattcataga acttgcaatg tttagcgaaa aaactggaaa attttgggtg
      481 gccatcaata ctaacgaatc gggatatatt agagtatatg aacgtgatca ggacggatgg
      541 tctagggatc aaccaatttt cgtagcacac gcaaacaatc aaggcctaac tattactaac
      601 ggtaagagaa taataattga caagctgtca gtagatgatt ttatcgttgg atcggtttca
      661 atatatggta aagatgaact aggaggtcct aacaattcga atagcggtac tatttcattc
      721 gatattcttt ttggtaatcc ttcagaatca ccattatact atgtaccact aataactatc
      781 attgttatcg ggtcaattgt acttgtttta cttattagaa aaaaacgaga ttagttattg
      841 tttccataat atttgcatat ttttgtcaag tgacaaagat tgcattttgg tttaatcggc
      901 aaacatatat tttgaccaaa tgtaacaaag gtttcattta ttccaatcca atacctactg
      961 tctattgatt tttgtaagtc aatttcagtc tcctccggtt ttttggtatt cacaatccca
     1021 attctattcg aaattctatg aacatgaatg tccacgggaa tcgccggttt tctaaatccg
     1081 tagacgagca cacaatttgc agtttttctt cctactcccg ggaatgtaag gagatcctct
     1141 aaatttgatg ggactttgct attatatttc tcgactagta tttttgatac ttcttttatt
     1201 cgagttgcct ttacattata gaagcctatt ttctgaatta atttttttat atctttcaaa
     1261 tctgctctag atagctcatc aggattcttg aactcagaaa agagcatctt aattacctgt
     1321 gcggtagtct catctctagt gcgtgctgac aatatagttc ctatcaatat tttgtaggga
     1381 tctccatctt cttgagtttg caagtttttc aaggcggtgg gtctaacaag attgttcttg
     1441 cgaagcgtac tctgcattag cgaaattatc ttactgaatc ttacaatcat agttctaact
     1501 aattcttatt ctcagtatga ataacgtaac aaaaaagttt ttggaatgaa atgattattc
     1561 cttcttttct tttactctgg ctcttccagt ttttcgtggt gcgatatttc ctacttttct
     1621 accaggagga gttgtccttc ctactgatga ttgacgacct acatgttggt gtcttccacc
     1681 accatgtgga tgataaaccg cagcttgtgc gattccccta actgttggat atagcttgcc
     1741 atgcgcagtc atgtatttgg ctttgtttcc tgctttaaga aatggctttt cttttcttcc
     1801 agcaccagaa acaacaccaa tcattgcctt gcatcttgga tttagtgtcg taaatttgcc
     1861 ggatggtaat ttaaccgata caccttggga cgtatgagaa aagaccaggg cagatgatcc
     1921 ggccgatttg acgagctttc ctccgtcccc aatgttcctt tccagattac aaataagggt
     1981 accgtctgga atcgcttcca atgccaaaat gttctttggt ttgaaatcga cattgtctcc
     2041 aatttgtatt ttctctccca ctgccatgcc atcaggagct ggcagatagc taaactcttt
     2101 atcgaattga attttagcca acggtgcatc tcttcctcgt tcgtgaacaa tgtcaattat
     2161 tgaaccaatt ttttgttcgg aagattgtaa ctttggatat ttggcaggta caatttttcc
     2221 agtcttaatg gcttgaaatt gtttacctcc tcttcccctt ctacgtacta aagttctttt
     2281 acccaataca gcccaatcga ataattgaat atcatcatga ttttaatctt tgggtagaat
     2341 gaaatttggg atctgaattg ttagtataat catgtaacca gctcatcttt tgtcaaatta
     2401 actggattga ttaaagtcaa atttttttac aggatatggt taatgttaga aagtagattg
     2461 ctcttttctg atgtttgatt cactaatatt tgtgaagagt aatcctcgac aaaggtataa
     2521 agataggtac gatagtacct gatatcgtga gtcaaaacac tctctcgctg aaggttctcg
     2581 aagcatatac tcgagacgtg ggtcgtggag tggctagaat cgattatgat tcaatggact
     2641 cgttaactgc atctacaggc gatgttatag aaatccgagg taaaagaagg accgttgcaa
     2701 aatgtctacc gctctatcct tctgatgaag gcaaaggaat agtaagagta gatggactag
     2761 tgcgaaacaa cgcaggtgtt gccattggag acaccgtaat tgtaaaaaaa ataaaggccg
     2821 ttcccgcaga aaaggtaatt gttgcaccgt tagaagctat tccaccaatt gacgaacgtt
     2881 accttgctga tgcactagaa agtgtaccat taattaaagg agataatgtg atggttcctt
     2941 attttggtgg tagacttact tttcaggtaa taggtgtaac accagcatcg gatgcagtat
     3001 tggtaactca gaaaactatt tttcatattg cagagaaagg tgaaactctt agaggtgttc
     3061 ctcaggtaac ttatgaagat attggaggct taaaagaaga gatccaaaaa gttagagaaa
     3121 tgatagagct gccattgaga catcctgaaa tctttgaaaa attaggtatc gaagctccaa
     3181 aaggtgtatt attgtatgga cctccaggaa caggaaaaac tcttcttgca aaagcagttg
     3241 cgaacgagag taatgctcat tttattagta tatctggacc agaaattatg agtaaatttt
     3301 atggggaatc tgaagcacgt ttgagagaaa ttttcaagga ggcgaaagaa aaagcgcctt
     3361 ctataatatt cattgacgaa atagattcaa ttgctcccaa gagagaagaa gttaccggtg
     3421 aggttgaaag aagagttgta tctcaactat tatctcttat ggacgggctt gaagcaagag
     3481 gtaaagttat tgtaattgct gctacaaatc gtccaaatgc catagaccca gctctaagaa
     3541 gacctggaag gttcgataga gaaattgaga tcaaagttcc agataaacgt ggaagattgg
     3601 agatattgca gattcacacg agaaatatgc cactagacac tgatgtagaa caagatagaa
     3661 ttgctgccgt aacacatggc tttgttgggg ctgatcttga atatctttgt aaagaagctg
     3721 ccatgaaatg tttgagacga ttacttcctg agttaaattt ggaagatgag aaactatcac
     3781 cagaagtctt gaataaacta atagttacca aaggagattt tgaaaatgcg gtaaaagaag
     3841 ttactccttc tgcaatgaga gaagtatact tggaatcacc ggatgttcct tggtctgcaa
     3901 ttggcggttt ggaggacatt aagcgtgaat tgcaagaggc tgtagaatgg ccattaagat
     3961 ttccagagct ttataccaag cttggacatg ctatgccaaa aggcctatta ttacatggtc
     4021 tgtctggaac cggaaagacg ctcctggcca aagctgtagc cacggagtct gaagccaatt
     4081 ttatcagcgt aagaggacca gaactcctta gcaagtgggt aggcgaatca gaacgcggta
     4141 ttagagagat ttttcgaaga gcaagacagg cagctccctg tgtagtattc tttgatgaaa
     4201 tagattcaat agctccagtt agaggaatgg ggggagacag tatggttaca gaaagagtag
     4261 tgtcacaatt gcttacagaa ttagacggta tccagtcact ttcaggtgta gttgtgctgg
     4321 ctgcaacaaa tagagctgat attattgata cggctttgtt acgaccagga agatttgata
     4381 aaatcttgtt agtcccgcta cccgataaat ctgcaaggct aaaaatattg gaaatacata
     4441 gtaaggacaa gccacttggt tcagatgtta acttagcgag aatagctgaa ttgacagatg
     4501 gtttcagcgg agccgacact agttcagtca taaatacagc tgtttcattg gtacttcatg
     4561 aata
//
LOCUS       DASUMD010000213         8524 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1407539, whole genome shotgun sequence.
ACCESSION   DASUMD010000213 DASUMD010000000
VERSION     DASUMD010000213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 8524)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8524)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8524
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1407539"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            77..262
                     /locus_tag="VFX26_05805"
     CDS             77..262
                     /locus_tag="VFX26_05805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574026.1"
                     /translation="MSYYNIELICNKCGSLNNRISNLKSVRDMLKPINSTCKNCGISL
                     NPFDFAISAERRYEKFV"
     gene            complement(347..1054)
                     /gene="rpiA"
                     /locus_tag="VFX26_05810"
     CDS             complement(347..1054)
                     /gene="rpiA"
                     /locus_tag="VFX26_05810"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004751 - ribose-5-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase A"
                     /protein_id="HEX5574027.1"
                     /translation="MSSGNKKHQLFNDNKYIALSQDFFKKYITRGSTIGLGSGSTVEK
                     IVRNFGLLEYKDTLEFVVTSLQIRIVSESIGLKIIDQKEGNIDVVLDGADQIDSSFNM
                     IKGGGGALLKEKILISSSKKFVIVAQANKFVDKFSMAIPIEVTPFGRIFVMRELEKIG
                     GLPRMRMLDKGYPFVTENGNIIYDTLLPKYDNIKETERDLKNIPGVIEVGLFTNHADS
                     YYKIHSENDFESIIARQ"
     gene            1232..2920
                     /gene="ilvB"
                     /locus_tag="VFX26_05815"
     CDS             1232..2920
                     /gene="ilvB"
                     /locus_tag="VFX26_05815"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005948 - acetolactate synthase complex
                     [Evidence IEA];
                     GO_function: GO:0003984 - acetolactate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009099 - valine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic-type acetolactate synthase large
                     subunit"
                     /protein_id="HEX5574028.1"
                     /translation="MSEMSGAKALMNSLEKEGVDIVFGLPGGANLPIYDALVDAKFRH
                     VLVRHEQSAAHMADGYARIKRKAGVCLATSGPGATNLITGIATAYADSSPLIAITGQV
                     PLNMIGKDAFQETDIIGVANPCTKYAFQPRYATEIPEVVKKSFYIAESGRPGPVLIDI
                     PKDVQQDVTEIPFPDLIKVRGYKPIVDPDLSNVGKAVELLVSAQQPIIMAGGGVILSG
                     AFSELQAVAELIMAPVVTTFKGKGAFPENHPLAMGPIGMHGHAEANRIILEADCILAV
                     GARFSDRSVGRFDEFGKGMNIIHLDIDPAEIGKNKSVDIAIVGDVKSALRTMAKMLSK
                     VAVKKNTENPWLKRRRELIDYFSQNIKDYPREMTARKALKKLRELLPAKSIVTTEVGQ
                     CQMWTSLHFDVISPGTFFSSTGLGTMGFGFPASIGAKAARPDVHVVDVAGDGSFNMTE
                     NSLAVSVLENLPVIVFLLNNDMLGMVAQWQRTFYDRRYMGVHQKSCPDYVKIAEAYGA
                     SGFSVQSMDELEKAIKSALKTDVATVIDIRIDPEEDVYPFVAPGTGLKDMITGA"
     gene            2924..3430
                     /gene="ilvN"
                     /locus_tag="VFX26_05820"
     CDS             2924..3430
                     /gene="ilvN"
                     /locus_tag="VFX26_05820"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990610 - acetolactate synthase regulator
                     activity [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HEX5574029.1"
                     /translation="MSSKEFKTKPLYIISSLVENKPGVLFRITNLFRARNFNIESITV
                     GITEKPDLSRMTITTRIDEAILDQLVKQLRKLIDIVEVDVLDINNTVYRELALIKIRA
                     KDFTNRNEIINFANVFRANILDIGKESVTVEVIGTPDKIDAFKNLIIQYDIVEMARTG
                     VSALQRGE"
     gene            3434..4942
                     /locus_tag="VFX26_05825"
     CDS             3434..4942
                     /locus_tag="VFX26_05825"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003852 - 2-isopropylmalate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HEX5574030.1"
                     /translation="MESQKVRIFDTTLRDGEQTPGVSITPEQKLNIAIKLSDLGVDTI
                     EAGFPVVSDGEKEGIKSIVRHKLDTEVCALARTVQSDIDSAIDCGVDYVHTFIATSDI
                     HMQYKLKMSREQVLEKALWAVEYAKSHGLKVEFSAEDATRSDRKYLIDVFKAVTDSGA
                     DRIDIPDTVGYSTPEYFTSLVQEIRSKMNTPISVHCHNDFGLAVANSIAAINAGASCA
                     HVTINGIGERAGNASLEEFVMALQCLYSKRHSIKVNLLYEISKFVSNTMGVIVQPNKA
                     IIGENAFGHESGIHTHGIINNPLTYEPINPELVGRKRWLQAGKHAGTHGIRAILTDFG
                     IEPTEEQLHKIIEKQKDIADKGKSITTSQLLSIASEVMGNSKFEEKFKLYDFHIITGM
                     NIIPTAVIRLNTHGKDLVASETGVGPVDAALKAIQKIAVDMANIRIREYRLGSITGGS
                     DAMAEVTIKAEDLDGNVVSSRKSGEDVVVASVEAMIDAVNKLMLRKVLYSKN"
     gene            4970..6007
                     /locus_tag="VFX26_05830"
     CDS             4970..6007
                     /locus_tag="VFX26_05830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate/isopropylmalate dehydrogenase family
                     protein"
                     /protein_id="HEX5574031.1"
                     /translation="MTKYSISLVNGDGIGPDLANSGQMLLDSISEYSGLKFDIVNVEA
                     GDNALVKYNKALPDFSFESIKKSDVCLKAPVGEHAAEVILVLRRYFDLYANIRPAKSY
                     PNVKSLHPLVDLVVVRENTEDLYLGWEFPIGDEAVIGLRLTTAEASRKIAEYAFEEAL
                     RRDAKKSVVCVHKSNVMRVGDTMFSKISKEVARKFPDVEFSESYVDACAMNLIRNPEK
                     YDVLLTTNLFGDILSDEAAQVVGGLGLAPAGNIGKKFAIFEPVHGAAFDIADKNIANP
                     SSMFLSIKMMLEWLASKNKNNEENRLIELGIKIEKTLISLLEQNLKTIDIGGNMHTDE
                     FTGMFISKLVS"
     gene            complement(6107..6514)
                     /gene="mce"
                     /locus_tag="VFX26_05835"
     CDS             complement(6107..6514)
                     /gene="mce"
                     /locus_tag="VFX26_05835"
                     /EC_number="5.1.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA epimerase"
                     /protein_id="HEX5574032.1"
                     /translation="MRVDHVAIAVNSVSEALKNYEKILKIDKIDIEEVPTERVKVAIL
                     RLEDTRIELMEPTAEDSPIKKFLTDRGEGIHHIAITADDIENDVERASANGTRMIGNI
                     RTGSYGRKITFIHPKSMNGVLTEFCQAPPGNKE"
     gene            complement(6527..8119)
                     /locus_tag="VFX26_05840"
     CDS             complement(6527..8119)
                     /locus_tag="VFX26_05840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016866 - intramolecular transferase
                     activity [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase family protein"
                     /protein_id="HEX5574033.1"
                     /translation="MAKQEIKKFKTDSGIPVKRIFSSKDVSNITDNEEAGKYPYTRGL
                     YPDMYRERVWTMRQYSGFGSAEETNNRFRFLLEHGQTGLSLAFDLPTQTGRNSDNPYS
                     QGEVGRTGVAISSIDNMMTCFQNIPLDKVSTSMTINSTASTLLSLYIVVAESQGVSSN
                     NLRGTTQNDILKEYIARNTYIYPPRESMRIIGDMIQFCSKHVPQWYPISISGYHMREA
                     GSNAIQELAFTFANAIEYINTCVSRGLKVDEFAPRLSFFFCCTMELFEEVAKFRAARR
                     IYAKIMKERFGAKSDKSTHLRFHVQTSGESLTAQQVDNNVVRVTLEALSAVLGGCQSL
                     HTNSRDEALALPTEESVKVALRTQQIIANETGVTKTVDPLSGSYYLEYLTSEIEEGVE
                     RYLKNIEKIGGSLSAIETGFFQEEIRRNAYQLKKEVDYNDRIIVGVNKFQDQNDVEPK
                     LNTIDPEIEIRQVKKLKEFKKSRDQAKVNSELSKLERFAEKEDENLMPHIISAVKAHV
                     TLGEISDVFVDIFGRYEPKFSF"
     gene            complement(8132..>8524)
                     /locus_tag="VFX26_05845"
     CDS             complement(8132..>8524)
                     /locus_tag="VFX26_05845"
                     /inference="COORDINATES: protein motif:HMM:NF015279.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl Co-A mutase-associated GTPase
                     MeaB"
                     /protein_id="HEX5574034.1"
                     /translation="QAIKAGLTEIGDIYIVNKSDLEGATILFNIISDLVGNNKKLVFK
                     CSAKMNKGIKELTKSLVKLLDDETYQAREKSILENELKDMILNLIKEKSIEKIMKSQE
                     YRKLVTKILKKEVEPYNAALNFANKIIV"
BASE COUNT         2674 a         1549 c         1641 g         2660 t
ORIGIN      
        1 tgttacatga attagtttct ctagtcataa ctaattaacc taacattaga tatttggtac
       61 tgtatgtaat ttcatattgt catattacaa tattgaattg atttgcaaca aatgtgggag
      121 cttaaacaat agaatatcaa acttgaaatc tgttcgtgat atgttaaagc cgataaacag
      181 tacatgcaag aattgcggaa tttcattaaa tccttttgac tttgcgatat ctgctgaaag
      241 aagatatgaa aaatttgtct gactcggtaa aaatgagtcg tatcaatcag gctagtgcta
      301 tattgcccta gaagcacaat ttaatatacc tttagttgat actctactac tgtctagcta
      361 ttattgattc aaaatcgttt tcgctgtgta tcttgtaata agaatcagca tgattcgtaa
      421 atagtcctac ttcaataaca cccggaatat ttttcaggtc cctttcagtc tccttgatgt
      481 tatcatattt tggtaacaaa gtatcgtaaa ttatattgcc attttcggtt acaaatggat
      541 aacctttatc taacatacgc attcttggta aacctccgat tttctctagc tctctcatca
      601 caaagattct tccaaacgga gtaacctcta tgggaattgc catgctaaat ttgtctacaa
      661 atttgttagc ctgagcgaca attacaaatt tttttgacga tgaaatcaat atcttctcct
      721 tcaacagagc tccaccaccg ccctttatca tgttaaaact ggaatctatc tgatcagctc
      781 catccaagac aacatcaata tttccttctt tttgatcaat tatctttagc ccaatggatt
      841 cagaaacgat tcttatttga agagatgtaa ctacaaattc caatgtatct ttatattcca
      901 atagtccaaa attccggaca attttctcta ctgtacttcc gctccctaat ccgatagtac
      961 ttcctctggt aatgtatttc ttaaaaaaat cctgtgaaag tgcgatgtac ttgttatcat
     1021 taaataattg atgtttcttg ttacctgaac tcatgtgatt aaaaggaact attaatgtgt
     1081 actttaatct ttacaagcca cctgtctttc agaatatgat ggtaaatatc ttcgtttatt
     1141 tattcggaaa gcccagacgg ataactcaca ctatacgtac agacgaattg acaacgagta
     1201 tatatacgaa gtatcaatga atattcctac aatgtctgaa atgagtggtg ctaaagcact
     1261 tatgaattcc ctggagaaag agggtgtaga catagttttt ggacttccag gtggggcaaa
     1321 tttgccaatt tatgatgcat tggttgacgc taaatttagg cacgttttgg taagacatga
     1381 acagtctgct gcgcatatgg ctgatggtta tgccagaatc aaaaggaaag ctggagtgtg
     1441 tctagcaaca tctgggccag gtgcaacaaa cctaattacc ggtatagcca cagcttatgc
     1501 agattcttct cccctaattg ctataactgg gcaggtacca ttgaatatga taggaaaaga
     1561 tgcatttcaa gaaacagata ttattggtgt tgctaatcca tgcacaaaat atgcttttca
     1621 gccaagatat gcaactgaaa tcccagaagt tgtaaaaaag tcattctata tcgcagaaag
     1681 tggtagacca ggaccagttc taattgatat cccaaaagat gtacagcaag atgttactga
     1741 aataccattt ccagatctca taaaagtgag gggatacaaa ccaatagttg atcccgacct
     1801 atctaatgtt ggaaaggcag ttgaactctt agtttctgcg cagcagccaa ttattatggc
     1861 gggcggtgga gttattttgt ccggagcttt ctcagaactt caggcagtag ctgaattgat
     1921 tatggcacct gttgttacta catttaaggg aaagggagct tttcctgaaa accaccctct
     1981 ggcaatgggt ccaataggga tgcatggaca cgcagaagca aacagaataa tacttgaagc
     2041 agattgcata cttgcggtag gcgctagatt ttcagatcgt tctgtaggga ggtttgatga
     2101 atttggtaaa ggaatgaata ttattcatct tgatatagat ccagctgaaa tagggaaaaa
     2161 caaatcagta gacattgcca tcgttggtga tgtaaagtca gcacttagga ccatggctaa
     2221 aatgttatca aaagtggctg tcaagaaaaa taccgagaac ccttggctta aaagaagaag
     2281 agagctaata gattattttt cgcaaaatat caaagattac cctagagaga tgactgccag
     2341 aaaagcactg aaaaaattaa gagagttgct gcctgctaaa tcgatagtaa caacggaagt
     2401 gggacagtgt caaatgtgga cttcattaca ctttgatgtt atctcccctg ggaccttctt
     2461 tagctccact ggattgggaa caatgggatt tggatttcca gcatcaatag gtgcaaaggc
     2521 tgctagaccg gatgtccacg ttgtagacgt tgctggtgac ggttcgttta acatgactga
     2581 aaattcactg gcagtttctg tgttagagaa tttaccggta atagtattct tgttgaacaa
     2641 tgatatgttg ggtatggttg cacagtggca aagaactttt tatgatagac gctatatggg
     2701 ggtacatcaa aaaagctgtc ctgattatgt caagattgca gaagcatatg gagcaagcgg
     2761 ctttagcgtc caatcaatgg acgagctaga aaaagcaata aaaagcgcac ttaaaacaga
     2821 cgttgcaact gtaattgaca ttaggatcga tccggaagaa gacgtatatc catttgttgc
     2881 tcccggtacc ggacttaagg atatgataac aggtgcatag tacatgagtt ctaaagaatt
     2941 caaaactaaa ccactgtata tcatttcatc gctagttgaa aacaaaccag gtgtgttatt
     3001 tcgcattacc aatctctttc gtgcaagaaa tttcaatata gagagtatta cagtagggat
     3061 taccgaaaaa ccggacttgt ctagaatgac aataacaaca aggatagacg aagctattct
     3121 tgatcaacta gttaaacaat tgagaaaact tattgatatt gttgaagtgg atgtccttga
     3181 catcaataat actgtctata gagagttagc cttgataaag ataagagcca aagactttac
     3241 aaataggaat gaaatcatta attttgccaa cgtgtttaga gcaaatatct tggatatagg
     3301 aaaggagtct gtgaccgtgg aagtaattgg aactccagat aaaatagatg catttaagaa
     3361 tctaatcata caatatgata tagtagaaat ggctcggacc ggtgtatccg ctcttcagag
     3421 aggagagtaa ttcatggaat ctcaaaaggt aaggatattt gatacaacat taagagatgg
     3481 tgagcagaca ccaggtgttt ctataacacc ggaacaaaaa ctcaacattg caataaaact
     3541 gtctgatctg ggtgtagaca caatagaagc tggattccca gtggtatctg acggtgaaaa
     3601 ggaaggaata aagagcattg taagacacaa actagacaca gaagtctgtg ccttagctag
     3661 aactgttcaa tcagacatag attcggctat agattgtggt gtagattatg ttcatacatt
     3721 tattgccact tctgatattc atatgcaata caaactaaaa atgtcgcggg agcaggtttt
     3781 ggaaaaagcg ctatgggccg tagaatatgc aaaatcgcat ggattaaaag tcgaattttc
     3841 cgcggaagac gcaacaagat ctgatagaaa atatcttatt gatgtcttta aggcagtaac
     3901 tgattcgggg gcagatagaa tagatattcc agataccgtt ggatattcga caccagagta
     3961 ttttacttca ctcgttcagg aaataagatc aaaaatgaac actccaatta gtgtacattg
     4021 tcataatgat tttggtcttg ccgttgcaaa ttctatagcg gcaataaatg caggagcatc
     4081 ttgtgcacat gttaccatta acggaattgg ggaaagagca ggaaatgctt cattagaaga
     4141 atttgttatg gctttgcagt gtttgtattc taaaagacat agtataaaag taaatttgct
     4201 gtacgaaatt tcaaagtttg tttcaaatac gatgggtgtt atagttcaac caaacaaggc
     4261 tattatcgga gaaaacgctt ttggtcacga atcaggaatt catactcatg gaatcataaa
     4321 taatcccctt acttacgaac caattaaccc cgaattggtt ggtagaaaaa gatggcttca
     4381 ggcaggaaag catgcaggga ctcatggaat tcgtgcaatt ttgactgatt ttggaatcga
     4441 acctacagag gaacaattgc ataaaataat tgaaaagcag aaggacatcg ccgataaagg
     4501 caagtctatt actacttcac aacttttatc aattgcaagc gaagtaatgg gcaattctaa
     4561 attcgaagag aaattcaaac tttacgattt tcatattatt actggcatga atatcattcc
     4621 tacggcagta ataagattga atacccatgg gaaggacttg gttgcatcag aaaccggggt
     4681 tggtcctgta gatgcagcac ttaaagccat acaaaaaatt gcagtagata tggcaaatat
     4741 tcgcataagg gaatatcgac ttggatctat aacaggggga tcagacgcaa tggctgaagt
     4801 tactataaag gctgaggatc tagatggtaa cgttgtttct tccagaaaat caggcgaaga
     4861 cgtggtggtt gcatcggtag aagcaatgat agacgcagta aacaaactca tgttgagaaa
     4921 agtactgtat tcaaaaaatt aaaatctgtc tagctcaagg tcatgagtat tgacgaaata
     4981 tagtatttca ttagttaatg gcgacggaat tggtcctgat cttgctaact caggtcaaat
     5041 gttacttgat agtatcagtg aatactctgg cttaaagttt gatattgtta atgtagaagc
     5101 aggagataat gcattggtaa agtacaataa ggcactcccg gatttttcat ttgagagcat
     5161 aaaaaaatca gatgtttgtc tcaaggcacc tgtaggggaa catgcagcag aagtaatact
     5221 agtactaagg cgatatttcg atctatatgc caatattaga ccggcaaaat catatccaaa
     5281 tgtaaaatct cttcatccac tggtggattt agtagttgtc agagaaaaca ctgaagatct
     5341 ctatttggga tgggaatttc cgattggaga tgaagcagtc ataggcttaa gactaacaac
     5401 agcagaggcg tcaagaaaaa ttgcagagta tgcctttgaa gaggctttga gaagagacgc
     5461 taaaaaaagc gtagtttgtg ttcacaaatc aaatgttatg agagttggag ataccatgtt
     5521 ttctaaaatt agtaaggaag tcgcaagaaa attccctgac gtcgaattta gtgaatcgta
     5581 tgtagatgca tgtgcgatga atttgattag aaatcctgag aaatatgatg tgctcttgac
     5641 aaccaatctg tttggagata tcctctcaga cgaggcggcc caagttgttg gaggcctggg
     5701 attagcacct gctggaaaca ttggaaaaaa attcgccata tttgaacctg ttcacggtgc
     5761 tgcattcgat atagcagaca agaacattgc aaatccttca tcgatgttcc tatccataaa
     5821 gatgatgctt gagtggttgg ccagtaagaa caagaataac gaagaaaatc gactcattga
     5881 gttagggata aaaatagaaa aaacgctgat aagtctcctt gaacagaacc taaaaacaat
     5941 tgatatagga ggtaacatgc atactgatga atttaccggg atgtttatat ccaaactagt
     6001 ttcgtgaaat tcaacttgcc aatctagact cttgcctgaa ttagcattga tgcaagtaga
     6061 ctaattctga attatgattg aggtaaaaaa agaatattaa atgttactat tctttgttac
     6121 caggtggagc ttgacagaac tctgtcaaaa caccattcat agattttgga tggatgaaag
     6181 ttatttttcg cccataagaa ccagttcgaa tattcccaat catccttgtc ccatttgcac
     6241 ttgctctctc gacatcattc tcaatatcat ctgcagtgat tgctatatga tgaatccctt
     6301 cgccacgatc tgtcaagaat tttttaatag gactgtcttc agcggttggt tccatcaatt
     6361 ctattcgcgt atcttccaac ctcaatattg caaccttcac tctttccgta ggaacctcct
     6421 caatgtcaat tttatcaatt tttagaatct tttcgtagtt ctttagggct tcacttacac
     6481 tatttaccgc tatagctaca tggtcaactc tcatttcaag tcaccatcaa aaagagaatt
     6541 taggttcata tcgtccaaat atatcgacaa aaacatcgct tatctctccc agggttacgt
     6601 gtgcttttac tgcagaaata atatgtggca taaggttctc atcttctttt tcagcaaatc
     6661 tttccaactt gcttaattca gaatttactt tggcttgatc tctgcttttc ttaaattctt
     6721 tcaatttttt cacttgacgt atctctattt cagggtctat tgtatttaat tttggttcta
     6781 catcattttg atcttgaaat ttgtttactc ctacaattat gcgatcatta tagtcaactt
     6841 ctttcttcaa ttggtaggca ttacgtctta tttcttcttg aaagaaacca gtttctattg
     6901 ctgatagaga tcccccaatc ttttctatat ttttgagata tctctcgact ccttcttcga
     6961 tttcagatgt cagatattca agataataag accctgagag agggtcaaca gtctttgtaa
     7021 cacctgtctc atttgctatg atttgttgag ttcttagggc aaccttaacc gattcttcag
     7081 ttggaagtgc caatgcctcg tctctagagt ttgtgtgtaa ggattgacat cctcctaata
     7141 ctgccgacaa tgcttctagt gtgactctca ctacgttgtt atccacttgc tgtgccgtga
     7201 gagattctcc gcttgtctgt acatgaaatc gtagatgagt agatttatcg ctttttgccc
     7261 cgaacctttc tttcataatt tttgcataga tgcgacgggc tgctctaaat ttggcaacct
     7321 cttcaaacaa ttccatagtg cagcagaaaa agaacgataa acgtggcgca aattcatcaa
     7381 cctttagccc tcttgatacg catgtattga tatactctat tgcattggcg aatgtaaaag
     7441 ctaactcttg aatagcattt gaacctgcct ctcgcatatg atatccagag atgcttatcg
     7501 gataccactg cggaacatgt ttagagcaaa actgaatcat atctccaatg attctcatcg
     7561 actctcttgg aggataaata tacgtattgc gagcaatata ctccttcaag atatcatttt
     7621 gcgtcgtacc ccttagatta ttagatgaga cgccctgcga ttctgcaaca acgatgtata
     7681 aggacaataa agttgaggca gtcgaattaa ttgtcattga agtactaacc ttgtctagcg
     7741 gtatattttg gaaacaagtc atcatgttgt caattgaact gattgcaact cccgtccttc
     7801 caacttcgcc ctgtgagtat ggattgtcgg aattcctacc agtttgcgtt ggaagatcaa
     7861 aggctagaga tagcccagtc tggccatgct ccaacaagaa tcgaaatcta ttgttagttt
     7921 cttctgcact tccaaatcca ctgtactgtc gcatagtcca cactctttct cggtacatgt
     7981 cgggataaag tccccttgta tacggatatt tgccggcttc ttcattatca gtgatattac
     8041 taacgtcttt tgaagaaaaa attctcttta caggaatacc tgaatctgtt ttaaattttt
     8101 ttatctcctg ttttgccaat tttctatcct cctatacaat tatcttatta gcaaaattta
     8161 aagctgcatt atatggttct acttccttct tcaggatttt ggttacaagt ttcctgtatt
     8221 cttgactttt cattatcttt tcaatagatt tttctttaat taagtttaaa atcatatctt
     8281 tcaattcatt ctctagtatt gatttttctc ttgcctggta tgtttcatcg tccaataatt
     8341 ttactaagga ttttgttaat tccttaattc ctttattcat ctttgctgaa cacttgaaca
     8401 ctagtttttt attgtttcct accaagtctg aaatgatatt gaatagtatc gtggctcctt
     8461 ccaaatctga tttatttaca atatagatat cgcctatctc tgttaagcca gcttttattg
     8521 cttg
//
LOCUS       DASUMD010000214         2900 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1076238, whole genome shotgun sequence.
ACCESSION   DASUMD010000214 DASUMD010000000
VERSION     DASUMD010000214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2900)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2900)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2900
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1076238"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(241..996)
                     /gene="cofE"
                     /locus_tag="VFX26_05850"
     CDS             complement(241..996)
                     /gene="cofE"
                     /locus_tag="VFX26_05850"
                     /EC_number="6.3.2.31"
                     /inference="COORDINATES: protein motif:HMM:TIGR01916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043773 - coenzyme F420-0 gamma-glutamyl
                     ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="coenzyme F420-0:L-glutamate ligase"
                     /protein_id="HEX5574035.1"
                     /translation="MEIFPIKIPKKDSGFDLFRTIVESKFQFQENDILVLSSKFVSMS
                     EGSLIDLKCVKVSKRAMTLASRFKMDKRIAQVTLQESDHIVSGIPGFLLSINDGMIAP
                     NAGIDKSNCPAGKIVLYPKDCFKSAKELRKKFFKKFGINVGIVISDSRLMPTRMGCTG
                     IAIGVSGFNPVDDERGKKDLFGKKLRVTFKATADCLATIGVFVMGESNESIPIVVIRG
                     ANVKKTERNLSMKDMTVSPKVDIYLRNMPLINF"
     gene            1081..2352
                     /locus_tag="VFX26_05855"
     CDS             1081..2352
                     /locus_tag="VFX26_05855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HEX5574036.1"
                     /translation="MNITEKIIARASNKNTVSPGDVVFADVDKLMVHDVSGPGVIKVF
                     EEWSKKGIHLENVWNPDKIWISEDHFVPSVDKISAENITKLTDWAKKFGIKKHFKYGL
                     GQYGICHTLSHEEALVLPGEFYVGGDSHTNTTGALGALAIGLGHTDIAYAMMNGRIWL
                     KVPETMLFKLVGKKPAHLMAKDIILKIISDIGTDGANYKAMEFSGNAVSEMGMEERLT
                     LTNMTTEAGAKNGVIEPDAVTDEYLRQRTATSYRPILGDDRHYLEEYTYEIEKLEPIV
                     AKPYSPQNAVVARELQDVEVNKAYIGSCTGAKLEDLRSAAQILKGKKVKIRTEVLPAA
                     QSIYIKALKEGLIGIFMEAGAVVGPPTCGACCGAHMGVLDKDEVCVSTTNRNFPGRMG
                     HVESQTYLASPLVVAASALTGKITDPRDASK"
     gene            2349..2837
                     /gene="leuD"
                     /locus_tag="VFX26_05860"
     CDS             2349..2837
                     /gene="leuD"
                     /locus_tag="VFX26_05860"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019913.1"
                     /note="catalyzes the isomerization between
                     2-isopropylmalate and 3-isopropylmalate in leucine
                     biosynthesis; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HEX5574037.1"
                     /translation="MTLKGTVHKYDRDNIDTDVILPGPYLKIHDHYELSKHAMEGIDS
                     DFSKKVSKGDFLLAGNNFGCGSSREHAPIALSHSGITAVIAPSFARIFYRNCVDGGYL
                     LPLEVQKSTLEQISDKDTLEIDIEKNQIHDVTNGKKFSISPFPPLIKKIIDCGGLMYY
                     KE"
BASE COUNT          930 a          543 c          566 g          861 t
ORIGIN      
        1 ttgttttcca attttacctt tttgaatcct tcagcaaaca atgtttttat caactcttct
       61 tttcttacct ttaccatcag actgagatga tcaaattgaa tttcttcatg ccgaatgaac
      121 tcgctgaatc ccttcagcaa gtttattgtt cttggataac tagtaagaaa ttctgacatc
      181 ctactaacta acatcatgca ctacaagtaa tattaaaagg ctatggaatt agacaatttt
      241 ctagaaattg atgagaggca tatttcttag gtaaatatct acttttgggc taacagtcat
      301 atctttcata ctcaagttac gctcagtttt tttaacattt gctccccgta taacaacaat
      361 tgggattgat tcattgctct ctcccattac aaatacccca atagtcgcaa gacagtccgc
      421 agtagctttg aaagtcaccc ttaatttctt tccaaacaga tccttcttgc ctctctcgtc
      481 atctaccggg ttaaagccag aaactcctat tgcaattcca gtacagccca tccttgttgg
      541 cattagtctg ctgtccgata tcacaatccc aacatttatt ccaaactttt tgaaaaattt
      601 tttgcgtagt tctttagcag acttaaaaca gtctttagga tacaatacga ttttcccagc
      661 agggcaattt gatttgtcaa tccctgcatt gggtgctatc atcccatcgt ttatactcaa
      721 aaggaaacct ggaatccctg aaactatgtg gtcagattcc tgcaaggtaa cttgtgcgat
      781 tctcttatcc attttaaacc ttgaagcaag tgtcatcgct cttttgctta ccttgacgca
      841 cttcaaatcg ataagagaac cctcactcat tgaaacaaat ttgcttgaaa gtactagaat
      901 atcattctcc tgaaattgaa attttgattc aactattgtt ctaaaaagat cgaaccctga
      961 atcttttttt gggatcttta tagggaaaat ttccatttac ttataaagat ccatctgaca
     1021 atatttgtgt tcaggaaaaa ttattaaagt caatgaagga tttatgttga tctttgaaaa
     1081 atgaatatta cagagaaaat aattgcgcgt gcttcgaata aaaatacggt tagtcctggt
     1141 gatgtagttt tcgccgatgt ggacaagtta atggtccatg atgtttctgg tccaggagtg
     1201 attaaggtat tcgaagaatg gtctaaaaaa ggaattcatc ttgaaaatgt atggaatccg
     1261 gacaaaattt ggatctccga agaccatttt gtaccttctg tagataagat ttctgcggaa
     1321 aatataacaa aactaacaga ctgggcaaaa aaatttggaa tcaaaaagca ttttaaatat
     1381 ggacttggtc agtatggcat ttgccatacg ctatcacatg aggaagcatt agtactacct
     1441 ggagaattct atgtcggagg tgattctcat accaatacaa cgggagctct tggggccttg
     1501 gcaataggtt tggggcacac tgatattgct tatgcaatga tgaatggacg gatttggctt
     1561 aaggttcctg aaacaatgtt gtttaaacta gttggaaaaa agccggcgca ccttatggct
     1621 aaggatatca tattaaaaat aataagtgat attggaactg acggagcaaa ttataaagcc
     1681 atggaatttt ccggaaatgc cgttagcgag atgggtatgg aagaaagact aacactcaca
     1741 aacatgacca cagaggcggg agcaaaaaat ggcgtaatcg aaccagatgc tgttacggac
     1801 gaatatctcc gccagagaac cgcaacttca tacaggccaa ttttgggaga tgaccgccat
     1861 tatctagaag agtatactta tgaaatcgaa aaacttgagc cgattgtggc aaaaccttat
     1921 tcaccacaaa atgcagtagt tgctagagaa ctgcaagacg tcgaagtgaa caaggcctat
     1981 ataggatcct gtactggagc aaaattggaa gatttgagat cagctgctca aatattaaag
     2041 gggaaaaaag taaagatacg gactgaagtt ttacctgccg ctcaatctat ctacattaaa
     2101 gcattgaagg aaggattgat tggtatcttt atggaggcag gggctgttgt cggccctcct
     2161 acctgtggcg cttgctgtgg ggctcacatg ggagttttag acaaggatga agtctgtgtc
     2221 agcactacta acaggaattt tccaggaagg atgggacatg tcgaatccca aacatatctt
     2281 gcgtcacccc tagtagttgc cgcttctgca ctcacaggca aaataactga tccaagggat
     2341 gcatcgaaat gactctgaaa ggaactgttc ataaatacga tagggataat atagacacag
     2401 atgtaatact tccaggtcct tatttgaaga tccatgatca ttatgaatta tcaaaacatg
     2461 ccatggaagg aatcgattct gatttttcaa aaaaggtctc aaagggcgat tttctccttg
     2521 cgggaaataa ctttggatgt ggatcaagta gggaacatgc tccaatagcg ctttctcatt
     2581 ctggaatcac tgcagtcatt gctccttcat ttgcacgaat cttttatcgt aactgcgttg
     2641 acggtggata tttattgcct ttagaagtgc aaaaatctac attagaacaa atctctgaca
     2701 aggacacgct ggaaattgac attgaaaaaa atcaaattca tgacgtaaca aatggaaaaa
     2761 aattctccat ctctcctttt cctccattga taaaaaaaat aattgattgt ggaggtctaa
     2821 tgtattataa agaatgagaa agagaaaagg taagctcgag gaaatattaa gcaaagcaag
     2881 gttttatgat gatatcgatc
//
LOCUS       DASUMD010000215         2253 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_854584, whole genome shotgun sequence.
ACCESSION   DASUMD010000215 DASUMD010000000
VERSION     DASUMD010000215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2253)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2253)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2253
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_854584"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..776)
                     /locus_tag="VFX26_05865"
     CDS             complement(<1..776)
                     /locus_tag="VFX26_05865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase family protein"
                     /protein_id="HEX5574038.1"
                     /translation="MFGSVWIRIVTLKIMNFGILLLPQINKITVLGSGIMGHGIAQVS
                     AMNGYNVVLRDIEERFLESAMNKIRWSLDKLVEKNKINKQESDKIHGRIKPIVELKEA
                     LDDADLLIEAVPEDLKLKKKVYSEVDQFAQEKTIYSSNTSTLPISEISQLTSRPDRFI
                     GLHFFNPPQLMKLVEVIPGASTAQSIVELGINFVKSLSKDPILCNKDVPGFIVNRIFI
                     PLVHEAAYCLENDSKSMTQIDSAVKFKMYLPMGIFELADYT"
     gene            837..1361
                     /locus_tag="VFX26_05870"
     CDS             837..1361
                     /locus_tag="VFX26_05870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF367 family protein"
                     /protein_id="HEX5574039.1"
                     /translation="MIQSFALLLNQDDPKKCSALKLIRFGSVLPTHSIRHNMLVLNPF
                     ASEVVCKTDKAMADSICVIDCSWNKAESVLTNHKYLTKGIPRKIPALLAGNPINYARL
                     GKLSSVESLAACYYVLGEKKIASSLLDKFKWGHTFLELNHDALEDYSTAENRKDIMRI
                     ELEYFGHYILEKNG"
     gene            complement(1460..1876)
                     /locus_tag="VFX26_05875"
     CDS             complement(1460..1876)
                     /locus_tag="VFX26_05875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574040.1"
                     /translation="MSGKINDLQDENVELRVETILNLSEDPEKVKKCLVNVVNGCRPV
                     TKDGHVEATCSGIMSLHHIRVGVRSKSSLGVFRKLLEWNRKGNATWFLLNKQAAYSGV
                     ISLVEHYEESPLGPIRVTITSKSLDTIIEWLLLSRG"
     gene            complement(1894..>2253)
                     /locus_tag="VFX26_05880"
     CDS             complement(1894..>2253)
                     /locus_tag="VFX26_05880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574041.1"
                     /translation="VNKIRIMKKENKKFGVVIVDGIRSMAEVQVLKRVGNVKLLAIHG
                     STLTRYSHVKERARSDVPSNIGEFDKRDRVEMEVGISNAIALADETISNNDISISELC
                     ERSFLMVQKWIQENGIR"
BASE COUNT          679 a          444 c          344 g          786 t
ORIGIN      
        1 gtatagtcgg ccaattcaaa tatacccatt ggtagataca ttttaaattt cactgccgag
       61 tcaatttgag tcatactttt gctgtcattc tctaagcagt atgcagcctc gtgcactaaa
      121 ggaatgaaaa ttctatttac aataaatcca ggaacatcct tgttacacaa aataggatcc
      181 tttgacaatg attttacaaa attgattcca agttcaacaa ttgattgggc agtacttgcc
      241 cctggaataa cctcgaccaa tttcatcaat tgtggcggat taaagaagtg tagtcctata
      301 aatctgtccg gtctactggt caattgagat atctcgctaa ttggtaaagt gcttgtgttg
      361 gatgaataaa ttgtcttttc ttgagcaaac tggtctactt cagaataaac ctttttcttt
      421 agtttaagat cttctggaac cgcttcaata agcaagtcag cgtcatccaa agcctctttc
      481 agctcgacaa ttggttttat tctaccatga atcttatctg attcctgctt gtttatctta
      541 tttttttcaa ctagtttatc taatgaccat cttatcttat tcattgcact ttccaaaaat
      601 ctttcctcta tatcgcgcaa tactacatta tatccattca ttgcagatac ctgtgctata
      661 ccatgaccca ttattccgga gcccaaaact gtgattttat ttatctgtgg caacagtaat
      721 attccaaaat tcatgatttt taatgttacg attctgatcc atactgatcc aaacaataac
      781 tgatcaaaat gtcgaaacta ttttattgat agttgtctat aatgaacaag ccatagttga
      841 tacaatcatt tgcacttttg ctaaatcagg acgatccaaa aaaatgtagc gcattgaaat
      901 tgataagatt tggctcggtc ttaccaactc attctataag gcataacatg ctagtattga
      961 atccttttgc cagtgaagtt gtttgcaaaa ctgacaaggc tatggcggat tctatctgtg
     1021 taattgactg ttcatggaat aaagcggaaa gcgtattgac aaatcataaa tatttgacga
     1081 aaggaattcc acgaaaaata cctgcattgt tggcaggcaa tcccataaat tatgcaaggc
     1141 taggtaaact atcaagcgtt gaatctctag cagcgtgtta ttatgtactg ggggagaaaa
     1201 aaattgcttc gagtttactt gacaaattca aatggggtca tacatttcta gaattaaatc
     1261 acgatgcatt agaagattat tccactgcag aaaatagaaa agatataatg agaattgaat
     1321 tggaatattt tggccactat atattggaga agaatggttg atcatacgct gtcttgttta
     1381 aagttcatcc attttcattt cactcaaatg gtatagttcc tataattagt atatataaat
     1441 aataaataaa taagatcttc tatcctctac ttaacaataa ccactctatt attgtgtcaa
     1501 gacttttgct agttattgta actcttatgg gaccaagagg cgactcttca tagtgctcaa
     1561 ctaatgatat cacaccgctg taagctgcct gtttgttcaa taaaaaccac gttgcattac
     1621 cttttctatt ccattctaaa agctttctaa aaactcccaa agaggatttt gatcttaccc
     1681 cgactcgaat atggtgtaat gacataattc cactacaggt agcttccacg tgtccgtctt
     1741 ttgttacagg tcggcatcca ttaacaacgt tcaccagaca tttttttact ttttccggat
     1801 cttcagaaag attgagtatt gtttctaccc ttaattcaac attctcatct tgaagatcat
     1861 taattttccc tgacaattat aatcactatt accctatctt attccgtttt cttgaatcca
     1921 tttttgaacc ataaggaaac ttcgttcaca tagttctgat attgaaatat cattatttga
     1981 tatagtttca tctgctaagg ctatggcatt gcttattcca acctccattt cgacccgatc
     2041 gcgtttgtcg aattcaccta tattagatgg tacatctgac cttgcccttt ctttaacatg
     2101 tgaatatctt gtaagtgttg atccgtgaat agctagcaat ttaacattgc ccacccgttt
     2161 tagaacttgt acctctgcca tacttctaat tccatctact atcactacac caaacttttt
     2221 gttttccttt ttcattattc tgattttgtt aac
//
LOCUS       DASUMD010000216         4450 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1076744, whole genome shotgun sequence.
ACCESSION   DASUMD010000216 DASUMD010000000
VERSION     DASUMD010000216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4450)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4450)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4450
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1076744"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..835)
                     /locus_tag="VFX26_05885"
     CDS             complement(<1..835)
                     /locus_tag="VFX26_05885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEX5574042.1"
                     /translation="MISSTYAIELLKKALEIYTPSRSEAQLANLIKEKCLDDLGFEKV
                     SIDSVGNVIATKGSGSPRMLLCGHMDTVPGHIPVRIDSGFLLGRGASDAKAPLISMLL
                     ACSEFKQRGTIIFAGVVDEEGNATGIKELVKNKLSVDYAIFGEPSGIDKITVSYKGRL
                     ALRLTCDVLDSAHASAPWLSKNSIEEVYEVWKMLSNEISSKYIKTDKKSESVSLSLTE
                     ISGGSSHNVTPQKCKITIDIRVPNGVKCLEVLNFLDNSIRNISEIRKVKITYRIEDMT
                     EP"
     gene            complement(845..1711)
                     /gene="lysX"
                     /locus_tag="VFX26_05890"
     CDS             complement(845..1711)
                     /gene="lysX"
                     /locus_tag="VFX26_05890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine biosynthesis protein LysX"
                     /protein_id="HEX5574043.1"
                     /translation="MKGNNKETSFFILYDQLRWEEKSLIETAKKKDIKLEVINCRENS
                     IELDKDKSIYCNDIILQRCVSYYNNLHSTAAFEGLGAKMINSLHTAIMCGNKLFTHME
                     LSKSGIAIPKAFCAFSNRSAMNILNKNGYPKVIKPVVGSWGRMIALLKDKEAAEAVIE
                     DREHMYPLYHVFYFEEFVKRPPRDIRCIVVGDRVVAAIYRYSGDNEWKTNMALGGKAE
                     ACKVTNEMEDLCLRAAKTMKGEILGVDLMESENGLLVHEVNNTTEFKNTVRVTEVDIP
                     SLIIDHLINSNK"
     gene            complement(1708..1875)
                     /gene="lysW/argW"
                     /locus_tag="VFX26_05895"
     CDS             complement(1708..1875)
                     /gene="lysW/argW"
                     /locus_tag="VFX26_05895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019878 - lysine biosynthetic process via
                     aminoadipic acid [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-aminoadipate/glutamate carrier protein
                     LysW/ArgW"
                     /protein_id="HEX5574044.1"
                     /translation="MIKCTECDAEIKIPDDAMENEIVTCPDCGASYELIKSSDGFTIR
                     PAQSVGEDWGE"
     gene            complement(1887..3080)
                     /locus_tag="VFX26_05900"
     CDS             complement(1887..3080)
                     /locus_tag="VFX26_05900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HEX5574045.1"
                     /translation="MSLNSDDPNHFANIYNRTISNKEIRILDSTLREGEQHPGVSFTN
                     KQRIQIAWLLDSFGVNQIEISPVVSHDHFEATKTIIKQGLKADILAHVRALKSDVEVA
                     IDCNATWVATYMGISDIHLSTKLKISREEAKIRALEVADFIKSHGLKSRFTMEDASRT
                     DPSFLVEMCKEMNSRGIERISIPDTVGIMRPQGMYNLVKMVYDSIDTKISSLDVHCHN
                     DVGLALANALSGCEAGANQIHTTIDGFGERTGIPSLAETAVALSVIYGIPNEFRLHML
                     KDLSRTIVAYTHIETPESKPIVGESAYKHKAGTHLAAILQNPSAYEILEPRLVGNRRK
                     IVFGELAGKNGAAYLLSLLGLESTKVEAAKMAKGLKELRMGDILELYLDERLERKILN
                     DALSK"
     gene            complement(3148..3570)
                     /locus_tag="VFX26_05905"
     CDS             complement(3148..3570)
                     /locus_tag="VFX26_05905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEX5574046.1"
                     /translation="MSKDNEFDQRILEILRIDSRKSFVDIGKELGLSESAIRRRIKNL
                     IDDGSISRFTIEENAGKKTSAITLLSVGSTTDTNSVASKLQSITGVKVIYEITGQYDI
                     AVIISANSINEINSSIDDIRRIEGVSDTDTVIILRTLT"
     gene            complement(3557..>4450)
                     /locus_tag="VFX26_05910"
     CDS             complement(3557..>4450)
                     /locus_tag="VFX26_05910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEX5574047.1"
                     /translation="SNSGAESIEAALKFSRKYSQKSGVISMYGGYHGKTFGALSVTHN
                     SKYRKSFNPLLEGVKFVPFGDISSLTDAIDESIGTVILEPIQGESGIIMPPEGYVKAV
                     RDLCTQKKLVLIFDEIQTGLGRTGKMWAGQNWNAVPDIMCIAKGIASGVPAGVTFVKD
                     EIANCMNLGEHSSTFAGNPIASSAGNATIDTIIKKDLVTKASDTGTYFKNKLIELKQK
                     HPIIRDVRGMGMMLAVESRFDVRDILMDGIKNGLLMLYSGRTIIRLLPPLVMKKEQVS
                     RAIDIMDEILSVEEKRRNVKG"
BASE COUNT         1202 a          982 c          713 g         1553 t
ORIGIN      
        1 agggttctgt catatcctca attcggtaag taattttcac ctttcttatt tctgaaatat
       61 tccttattga attatccaag aaattcagta cttccaagca ctttactcca tttggtactc
      121 gtatgtctat cgtaatctta catttttgag gtgtaacatt gtgactcgaa cctccagaaa
      181 tttctgtgag actaaggctc acagattcac tttttttatc agtcttgata tattttgatg
      241 aaatctcatt actaagcatt ttccaaactt catatacctc ctcgatagaa tttttcgata
      301 gccacggcgc actagcatgt gcactatcta ggacatcgca tgtaagtctt aatgcaagcc
      361 ttcccttata cgatacagta attttatcaa ttccacttgg ttctccaaat attgcgtaat
      421 caacagacaa tttattcttg accaactcct taatcccagt agcgttccct tcttcatcaa
      481 caacccctgc aaatatgatc gttcctctct gtttgaattc cgagcatgca aggagcatgg
      541 atataagagg ggccttggca tcagatgctc ctcgaccaag gaggaaacca gaatcgattc
      601 taaccggtat atgccccggc acagtgtcca tatgtccaca taaaagcatt ctcggactac
      661 cgctaccctt ggttgcaatc acattaccaa cgctatcaat acttactttt tcaaatccta
      721 gatcatccaa acatttttcc tttatcaagt tagctaactg cgcttctgat ctagaaggtg
      781 tgtatatttc aagagccttt ttcagtaatt caatcgcata tgttgaagaa atcaattttg
      841 ctaattattt attggagttt attaggtgat caataatgag agatggaata tctacttcag
      901 ttacccttac cgtattcttg aattctgtag tattgtttac ttcatgcaca aggaggccat
      961 tttcactttc cattaaatcc actcctaaaa tctccccctt catcgtcttt gctgctctta
     1021 aacaaagatc ttccatttcg tttgttactt tgcaagcttc tgcttttcct ccaagagcca
     1081 tgttagtctt ccattcgttg tctcctgagt atctatagat cgctgcaacc accctatctc
     1141 ctactacaat acatctaata tctctgggag gtcttttaac aaattcttca aaataaaata
     1201 catgatataa tggatacata tgttccctgt cttctatcac tgcttcagct gcctctttat
     1261 cctttagtaa cgcgatcatt cttccccagc taccaaccac aggtttgata acctttgggt
     1321 atccgttctt atttaggata ttcatggcag accgattgga aaaggcacaa aatgcctttg
     1381 gtatagctat tccagatttt gacaattcca tatgagtaaa tagtttattt ccgcacatga
     1441 tagcagtatg aagagaattt atcatctttg ccccaagtcc ctcaaatgcc gcggttgaat
     1501 gcagattatt ataataactt acacatctct gcagtataat gtcattacaa taaattgatt
     1561 tgtctttgtc cagctcgatt gaattttctc tacaattaat gacttctagt ttgatatctt
     1621 tttttttcgc agtttcaatt aacgattttt cttcccatct tagttggtca taaaggatga
     1681 aaaaagaagt ttctttgtta tttcctttca ctctccccaa tcctctccga cagattgtgc
     1741 aggtcttatg gtaaacccat cgcttgattt tattaactca taactggcac cacaatcagg
     1801 acatgtcaca atttcgtttt ccattgcatc atcgggtatt ttgatttctg catcacattc
     1861 agtgcatttt atcattacta tctcctctac tttgataatg catcgttaag tatttttctt
     1921 tctaatcttt cgtcaaggta taattccaag atatctccca tacgcagttc tttcagaccc
     1981 tttgccattt ttgctgcttc aacctttgta gattcaagtc caagcaaaga tagcagataa
     2041 gctgcgccgt tttttccagc caattcccca aagacaattt ttcttctatt tccaactagt
     2101 cgaggttcga ggatctcata tgccgatgga ttttgcagaa tcgcagccaa atgcgtgcct
     2161 gctttatgct tatacgcgct ttcaccaact attggtttgg attcaggagt ttcaatatgt
     2221 gtataagcaa caattgttct tgaaaggtcc tttagcatat gcaacctaaa ctcattagga
     2281 attccataaa tgacgcttaa agcaaccgct gtctccgcta gggatggaat tccagttctt
     2341 tcgccaaatc catcaatagt cgtgtggatc tgattggctc ctgcttcaca tcctgaaagt
     2401 gcatttgcca acgctaatcc gacatcgtta tggcaatgca catcaagcga tgaaattttc
     2461 gtatcaatac tatcatacac catcttaacc aggttgtaca ttccttgcgg acgcattatt
     2521 ccaacagtat cgggaatgct tattctttca attcctcgtg aattcatttc tttacacatt
     2581 tctactaaga atgacggatc cgtcctactt gcatcctcca tcgtaaaacg agattttaat
     2641 ccatgagatt ttataaaatc tgcaacttca agtgccctga ttttcgcttc ctctcttgaa
     2701 atctttagtt ttgtagaaag gtgtatgtct gaaattccca tatatgtcgc aacccacgtt
     2761 gcgttgcagt ctatagcgac ttctacatca gatttcagtg cccttacgtg ggccaaaata
     2821 tctgctttga ggccctgctt gattattgtt ttagttgctt caaaatgatc atgggaaacg
     2881 actggactga tttcaatttg atttacacca aatgagtcca ataaccaggc aatctggatt
     2941 ctttgtttat ttgtaaatga gactcccgga tgttgctcac cctcgcggag tgtcgaatct
     3001 aatattctta tttctttatt agatatagtt cgattgtata tgttcgcgaa atggttagga
     3061 tcatctgaat ttagtgacat ttatgcttaa atagagctta tttcgaatac aatataaatc
     3121 ttttcggcta ttcgattaat atgtatctta cgtaagtgtt cttagaataa tcacagtatc
     3181 tgtgtcagat acaccttcaa ttcttcttat gtcatcaatg ctgctgttaa tttcgtttat
     3241 tgaattggct gatattatta ccgctatatc atattgtccg gttatttcat agatgacctt
     3301 gactcccgtg atgctttgga gtttcgatgc aactgagttt gtgtcagtgg ttgatcctac
     3361 agagagtaat gttatggcgc tagttttttt gcctgcattt tcctcaatag tgaacctaga
     3421 tattgatcca tcgtcaatta aattcttaat ccttcttctt atcgcagatt cagacaaacc
     3481 gagctctttt cctatatcca caaaagattt tctagaatct atacggagga tctcaagaat
     3541 ccgttgatca aattcattat cctttgacat tgcgcctctt ctcctcgaca cttagaatct
     3601 catccattat atcaatagct ctacttacct gttctttctt cataaccaaa ggtgggagga
     3661 gccgtattat tgttcttcca gaatataaca tcaataagcc gttttttatg ccatccatta
     3721 atatgtctcg gacatcaaaa cgcgattcta cggcaagcat catccccatc cctcttacgt
     3781 cccttataat aggatgtttt tgcttcaatt caatgagttt gttcttgaaa taagtacctg
     3841 tatcggaggc tttggttacc agatctttct ttattattgt gtctatcgtg gcattgcctg
     3901 cagaagatgc aattggattt cctgcaaaag tcgaagaatg ttctccaagg ttcatacagt
     3961 tggctatttc atccttgaca aatgttacac cagcgggaac acctgaagca ataccctttg
     4021 ctatacacat aatgtcagga acagcattcc aattttgacc tgcccacatt ttacctgttc
     4081 gtccaagccc agtttgtatt tcatcaaaga tcaataccag ttttttctga gtacataagt
     4141 ctcggaccgc tttaacatag ccttctggag gcataattat tccagattct ccttggattg
     4201 gttcgagaat tacagtacca atgctttcat ctatcgcatc agtaagcgac gatatatctc
     4261 caaaaggaac aaattttact ccctctagta ggggattaaa tgatttacga tatttagaat
     4321 tgtgtgtcac agataatgca ccaaaggttt ttccatggta accaccatac atggaaatta
     4381 ctccactttt ttgtgaatat tttcgtgaga attttaaggc agcttcaata gactcagcgc
     4441 cactattgct
//
LOCUS       DASUMD010000217         2381 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1076866, whole genome shotgun sequence.
ACCESSION   DASUMD010000217 DASUMD010000000
VERSION     DASUMD010000217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2381)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2381)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2381
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1076866"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..917)
                     /gene="sufB"
                     /locus_tag="VFX26_05915"
     CDS             complement(<1..917)
                     /gene="sufB"
                     /locus_tag="VFX26_05915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HEX5574048.1"
                     /translation="MTSDLNMDYSKYDFKDSTELYVYLSKKGLSRGTVEEISKLKGEP
                     DWMREFRLRAYEVFLSKPMPNWGGDLSHIDFQNIYYYAKASEKQSKSWEEVPESVRNT
                     FEKLGIPEAERKFLAGVGAQYESEVVYHNLREDLEKQGVIFVDTDTAVKKYPDILKKH
                     FGKVIPPEDNKFAALNSAVWSGGSFIYVPRNVKIDLPLQAYFRINAENIGQFERTLII
                     ADEGAEVHYIEGCTAPVYTTESLHSAVVELIAKRGAKIRYTTIQNWSKDVYNLVTKRA
                     YAYENATVEWIDGNLGSKLTMKYPGVYMLG"
     gene            1084..1755
                     /locus_tag="VFX26_05920"
     CDS             1084..1755
                     /locus_tag="VFX26_05920"
                     /inference="COORDINATES: protein motif:HMM:TIGR01470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional precorrin-2
                     dehydrogenase/sirohydrochlorin ferrochelatase"
                     /protein_id="HEX5574049.1"
                     /translation="MIVDLNVNNKKAVVIGGGTEGLRKIHGLLDQECEITVITSRLNN
                     QLKKMMADGRIKLIKSRIKDVEILNGFRNVFLILAATDDKVLNRKLVEKGKSMGAFVY
                     AADDPKISDFSYASLVNVEGLIQVAISTSGKSPIMARKIRMKIERMVHKSISDSDISN
                     IILQEYARKRAKQKLDTVKERKEFLYSLIKDKNIQHLLRSNKLGEAKMTALHMLKNWE
                     NMRKT"
     gene            1752..>2381
                     /locus_tag="VFX26_05925"
     CDS             1752..>2381
                     /locus_tag="VFX26_05925"
                     /inference="COORDINATES: protein motif:HMM:NF017051.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HEX5574050.1"
                     /translation="MNSVITNELKLLNVRVTHKKAPIHQLEKFTFKDIAKAHRVFLTS
                     GYIRECVILQTCNRVELFFALEMIDVEKIFDTWKSITGLEDLSFEFAEIDEDKGAIHH
                     LLRLTSGLESLVVGEDQILGQVKRAFEYSRQNCYVDLFVPIIFEHAIKVGSRIRTNTG
                     LNKGSVSIGSMAVNLAEEYFDNFQNKKVLLIGTGEGATLVAKSLKKRQVN"
BASE COUNT          800 a          415 c          447 g          719 t
ORIGIN      
        1 ccaagcatat agacacccgg atatttcatt gttaacttac ttccaaggtt gccatcaatc
       61 cactcaactg ttgcattctc atatgcatat gccctctttg tgaccaagtt gtacacgtct
      121 ttgctccaat tttgaatagt agtatatctt atttttgcac ctctctttgc gattaactct
      181 acaactgcag aatgaagtga ttcagttgtg tatactggag ctgtgcatcc ttctatatag
      241 tgcacctctg cgccttcatc agctatgata agagttcttt caaactggcc aatattttct
      301 gcattgattc tgaaatatgc ttgaagagga agatcaatct ttacatttcg tggaacataa
      361 atgaatgatc ccccggacca tacagcactg tttaaggctg caaatttgtt atcttccgga
      421 ggaataacct taccaaagtg tttctttaaa atgtcaggat atttctttac tgcagtatca
      481 gtatctacaa atattacccc ttgtttttct aaatcttctc taagattatg atatacaacc
      541 tctgattcgt attgtgctcc aactccagca aggaattttc tttctgcttc aggaattcct
      601 aatttttcaa aagtgttcct tactgattct ggaacctctt cccaactctt actttgtttc
      661 tcagacgcct tagcataata gtaaatattt tgaaaatcaa tatgtgacag atcaccgccc
      721 caatttggca ttggtttgct aagaaaaact tcataagcgc gtaatctaaa ttctctcatc
      781 cagtctggct cacccttaag tttgctaatc tcttcaactg ttccccttga aagccccttc
      841 ttgcttaaat atacgtacag ctctgtagaa tccttgaagt catacttact ataatccata
      901 ttcagatctg aggtcattaa gaattataac gtcgttatgg tatatatact atatgatatt
      961 tccaatggat gtgaaaaagg tcattcaaac tagaagtatt gataatatga tcgcaatagc
     1021 cctatggaat gattaaataa agacatgagc atcaaatgca tagttcacat caggtgcacc
     1081 taattgatag tcgaccttaa cgtaaacaat aagaaggcgg ttgtaatagg cggtggtacc
     1141 gagggcctac gcaagataca cggacttttg gaccaagaat gtgaaataac agtaataaca
     1201 agtagactaa ataatcaact caaaaaaatg atggctgatg gaagaattaa attaataaaa
     1261 agcagaatta aagatgttga aattttaaat ggatttagaa atgttttcct gattttggct
     1321 gcaactgatg ataaagtcct aaatagaaaa ctcgtagaga agggaaaatc tatgggagca
     1381 tttgtctatg cggcagatga tcctaaaata agtgatttct cctacgcgtc gctggtgaat
     1441 gttgaaggtc tgatacaagt ggcaatttcg acgtctggaa aaagtccaat aatggctaga
     1501 aaaataagga tgaaaataga aaggatggtg cataagagta ttagtgattc agatattagc
     1561 aacatcatct tacaggaata tgctcgcaaa agagcaaagc aaaaattaga tacggtgaaa
     1621 gagagaaagg aattcttata ttcattaata aaagataaaa atatccaaca tttgttaaga
     1681 tcaaataagc tcggcgaagc aaaaatgact gcattacaca tgttgaaaaa ttgggaaaat
     1741 atgagaaaaa catgaattca gtaattacca atgagctaaa actattgaac gtgagggtaa
     1801 ctcacaagaa agccccaatc caccaactcg aaaaatttac gttcaaggat atcgcaaagg
     1861 cgcatcgagt attcttgacc agtggctata tacgagagtg tgtcatacta caaacgtgca
     1921 atagagtcga attatttttt gccttagaaa tgatagatgt cgaaaagatt tttgatactt
     1981 ggaaaagcat tactggactc gaagatttgt catttgaatt tgccgaaatt gatgaagaca
     2041 aaggtgcaat tcatcatctc ctcaggctga cttcaggact tgaatcactc gtagtaggag
     2101 aagatcaaat tttgggtcaa gttaaaaggg cttttgaata ttcccgccag aattgctatg
     2161 ttgatttatt tgtcccgata atttttgaac atgcgataaa ggttgggagt agaattagaa
     2221 ctaacactgg tttgaataaa gggagcgtat cgataggttc aatggcagtt aatttggctg
     2281 aggaatattt tgataatttt caaaataaga aagtattgtt aattggtact ggtgagggag
     2341 caacactagt tgccaaatca ctcaagaaga gacaagtcaa c
//
LOCUS       DASUMD010000218         2995 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_192340, whole genome shotgun sequence.
ACCESSION   DASUMD010000218 DASUMD010000000
VERSION     DASUMD010000218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2995)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2995)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2995
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192340"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..431)
                     /locus_tag="VFX26_05930"
     CDS             complement(<1..431)
                     /locus_tag="VFX26_05930"
                     /inference="COORDINATES: protein motif:HMM:NF026066.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HEX5574051.1"
                     /translation="MKNNEIVEIFREISYLIQIAEKDPNTIYKIRAYDKAADVIENLS
                     LSIEEIYLKDGVQGLRKIPSVGNAISSKIEELIKSNKIAYHEELKRKIPIRISEFSKL
                     RGVGPRTMKILYEKLKITSISELEKAASEGKISKLKGFSKT"
     gene            670..1554
                     /locus_tag="VFX26_05935"
     CDS             670..1554
                     /locus_tag="VFX26_05935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEX5574052.1"
                     /translation="MIELGYDYPLYRPPSESNSIIFQVTLGCSFNKCSFCNMYRSKEY
                     SERPWEEIKSEIDIVSKSYPDTEKIFLADGDALNLRTEKLVQILDYIREKFPNLKRIS
                     CYAMPKNLLQKSSDDLTMLNNKGLNMLYVGVETGNDVLLKKITKGATSKGIIDACNRA
                     KKSGFIISCMIILGVGGKKYSKEHMKETARVVSEVSPNFLAALTLILEDGVHDEFMEK
                     FGEPFESLDDALILNELELLLSSISSTSTIVFRANHASNVYSIGGNLPVDKEKMILLI
                     RSLKEHPELLKPKVLRRF"
     gene            complement(1854..>2995)
                     /gene="serS"
                     /locus_tag="VFX26_05940"
     CDS             complement(1854..>2995)
                     /gene="serS"
                     /locus_tag="VFX26_05940"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004828 - serine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006434 - seryl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HEX5574053.1"
                     /translation="ETQNFRHRKNTLSQTIANKKKSQVSIEKELDEMKNVGKLMQNVE
                     SKKEMIEKRYSELIYSIPNMLDESVPTGDSEEDNIVIRTYNDYLKSGSKKDHVDLANS
                     LGLIDLESAAKISGARFYFLKKELVKMNQALINYALDFLEGYGYQLIQPPFMLKNDAI
                     KGSIIMDDFEDVIYKIENEDLYMIGTSEHAMASLHMDEILDSGKLPLKYASISPCFRK
                     EAGAHGKDMKGIFRVHQFEKVEQFVISDSANSFEEHERLLMITERFYQNLEIPFRVVL
                     LCSADTGKVSSKTYDIEAWMPGQNKYREIGSCSNCIDFQSRRLGIRHRERTNEETRLV
                     HTLNCTLVATERTMVAILENYQTNSHTVIIPNVLRKYMGDIKEIK"
BASE COUNT          923 a          540 c          491 g         1041 t
ORIGIN      
        1 ttagtctttg aaaaaccctt taactttgaa atttttcctt ccgatgctgc tttctctaac
       61 tcagaaatgc tggtgatctt taatttctcg taaagtatct tcatcgtcct gggaccaact
      121 cccctcaatt tggaaaattc agatatcctt ataggtatct ttctctttaa ttcttcatga
      181 taagcaattt tatttgattt gataagttcc tctattttgg atgaaatagc attacctacc
      241 gatggtattt ttctaaggcc ctgaacacca tctttaagat aaatttcctc aatactcaat
      301 gacaaatttt caatcacatc ggcagcttta tcatacgctc taatcttgta gatcgtattt
      361 ggatcttttt ctgctatttg gataagatac gagatctcgc gaaatatttc aacaatttca
      421 ttatttttca tttcgtaatt ttaagtgatt tgtgtataac ttgtgtaaat aataaatata
      481 atccctgaag tctcttatgt ctcaaaagtc atatcacttc aataagcgga aaatggatat
      541 atgaagttaa atcggcgttg tatataattc ggccatgaaa tatgttaatt ttcccaactc
      601 aaacctgatc agaagtgctc aatagttttt ccacacaagt taaattgcat aacattatta
      661 atatttacca tgattgaact gggatatgat tatccactat ataggccacc atcagagtcc
      721 aattcaatta tttttcaggt tactttggga tgttcattta acaaatgctc attttgcaat
      781 atgtacaggt ctaaagaata ttctgagaga ccgtgggaag aaattaagag tgaaatagat
      841 attgtatcaa aatcataccc cgacactgaa aaaatttttc tagccgatgg ggacgcccta
      901 aatcttcgca cagaaaaatt ggttcaaata ttggattata ttagagaaaa atttccaaat
      961 ttaaagcgaa tttcttgtta tgcaatgcct aaaaatctcc ttcagaagag ttccgacgat
     1021 ctgacaatgt tgaacaataa gggactgaac atgttgtatg tgggggtaga aacaggcaat
     1081 gatgttcttc ttaagaagat tacgaaagga gctacttcaa aaggtatcat agatgcatgc
     1141 aatagggcta aaaaaagtgg tttcattatt tcatgtatga ttatcttggg ggttggtggt
     1201 aaaaaatatt caaaagaaca tatgaaggaa acagcccgag ttgtaagtga agtttcgcca
     1261 aactttttag ctgctctgac attaattctt gaagatggag tacacgatga gtttatggaa
     1321 aaatttggtg aaccatttga atcattagat gatgcattga tactaaatga gcttgaattg
     1381 ttattaagca gcattagctc tacttcgact attgtcttta gggctaatca tgcatcgaac
     1441 gtttattcca ttggtggcaa tttgccagta gacaaggaaa aaatgatttt attaataaga
     1501 agcttaaagg agcatccaga attactcaaa ccaaaagttt tacgaagatt ttaagaatat
     1561 tagtatagcg actttaacat aagtttaatc taatatcgcg ataatccagc gtaatcgaaa
     1621 atttgttttt gatttaatca tcagatttgg ttcatgaatt aagatatgga tattagtcca
     1681 aaattacagc tggtcgccag aactaataag tagttggaac aggagcctgc aacaatcatg
     1741 cccaccagct gtagttgaag cgttaccttt ctttttgcaa caaactataa aaaaattaca
     1801 ttagacgcat ctttatcaat cgacatccgg tacctatgaa atgtagctta tccttatttg
     1861 atctctttga tgtctcccat gtatttcctt aatacatttg ggattattac tgtatgacta
     1921 tttgtttgat aattctcaag tattgcaacc atagtacgct cagtggcgac aagagtacaa
     1981 ttaagtgtat gcaccagtcg agtttcttcg ttggtccttt ctctatgacg tataccaagt
     2041 cgcctggact ggaagtcaat acaattagaa catgatccta tttctctata cttgttttgt
     2101 ccaggcatcc atgcctcgat gtcataagtt tttgacgata ccttacctgt atcggcacta
     2161 cacaatagta ccactctaaa cggaatttcc aaattttgat aaaatctttc tgtgatcatc
     2221 aacaatcttt catgctcttc aaaggaattt gcagaatctg agatgacgaa ttgttccact
     2281 ttttcaaact gatgaaccct aaaaattccc ttcatgtctt tgccatgtgc accagcctct
     2341 ttcctgaagc acggactaat actagcatac ttcaatggaa gttttcctga atccaaaatt
     2401 tcatccatgt gcaaagaagc cattgcatgt tccgatgtgc caatcatata cagatcttca
     2461 ttttcaattt tgtaaataac gtcttcaaaa tcatccatga tgatcgaacc tttaattgca
     2521 tcatttttta gcatgaatgg aggttgaatc aattggtatc catatccttc aagaaagtct
     2581 agtgcatagt ttatcaaggc ttggttcatt ttgacaagtt ctttttttag gaaatagaat
     2641 ctagctccag atatttttgc tgcactttcc aaatcgatca atccaagtga gttcgccaaa
     2701 tcaacgtggt ccttcttgga tcctgattta aggtaatcat tgtacgtcct gataacaata
     2761 ttatcctcct cactatctcc ggttgggact gactcgtcta acatgttggg gatcgagtaa
     2821 attaattcag aatatctttt ttctatcatt tccttcttgg attctacatt ttgcataagc
     2881 tttccaacat ttttcatttc atcaagttcc ttttcaatac ttacttgact ttttttctta
     2941 tttgcaatag tctgtgataa ggtatttttt ctgtgtctaa aattctgagt ttcta
//
LOCUS       DASUMD010000219         6331 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_968099, whole genome shotgun sequence.
ACCESSION   DASUMD010000219 DASUMD010000000
VERSION     DASUMD010000219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6331)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6331)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6331
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_968099"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..874)
                     /gene="guaA"
                     /locus_tag="VFX26_05945"
     CDS             complement(<1..874)
                     /gene="guaA"
                     /locus_tag="VFX26_05945"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003922 - GMP synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006177 - GMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HEX5574054.1"
                     /translation="MDKIVVLDFGSQYSHLICRRIRESNVYCELLPYDSPISLIKNLD
                     PKGIVLSGGPSSVYLKGSPKPDKKIFEMGVPVLGICYGHQLIVDEFDGKIRRFDNREY
                     GYADLIIDDNLDLFKGINKKIKCWMSHADAAESIPNDFEILAHTDNSISAAIANRNKK
                     FYGIQFHPEVSHTEEGNRILRNFSHSISNAKPDWTMQGFIDFSIKDIRSKVHDDKVLC
                     AISGGIDSTTLAVLLNKAISGNLTCVFVNNGLLRLNEESLVPELISKYLGIKTVRINA
                     EERFLSRLKGIEDPE"
     gene            complement(882..1547)
                     /locus_tag="VFX26_05950"
     CDS             complement(882..1547)
                     /locus_tag="VFX26_05950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574055.1"
                     /translation="MSTFSEDDIRRAAEVREWLVKEVTNKKEELDKLRDTLLIVDSLL
                     KKTSFITASHLESSASNLKDRSATEYQSLDKEETVQTKPSSDSTTKSTNTEYGQDDNQ
                     GVQIKSLKRAKDNLLISNAEYTSTYVKIPLVNDINLNINTPPFKSFFLNRILEGMKSK
                     DKEKIQKGEIDESEIIDYNVDNDENGQIKSVTISNYRERERLIEIFNTATWVFTRMLE
                     KGI"
     gene            complement(1643..2365)
                     /locus_tag="VFX26_05955"
     CDS             complement(1643..2365)
                     /locus_tag="VFX26_05955"
                     /inference="COORDINATES: protein motif:HMM:NF014075.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-hydroxymethylpterin diphosphokinase MptE-like
                     protein"
                     /protein_id="HEX5574056.1"
                     /translation="MKFIEWFPFYQQIRSEFGYSTETDQKAAEMLSNMIKRKALQVSK
                     IQKKIQGKEVLVIGAGPSLEKNIEFIKKNKKYVKIAADGVVEILLNKKIKPDIVVSDL
                     DGNPKYLRMADKFGAIMVIHAHGDNMKNLEKYVPKFSKVIGTTQVMPTENVYNFGGFT
                     DGDRSVFLAEEMSAKSITLIGMDFDNMPRKFSTNDKDVDIDLKRKKLKFAKKLLEMLG
                     KQSKSKLVNKSATTIRGIKSQP"
     gene            2596..2967
                     /locus_tag="VFX26_05960"
     CDS             2596..2967
                     /locus_tag="VFX26_05960"
                     /inference="COORDINATES: protein motif:HMM:NF016798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUN14 domain-containing protein"
                     /protein_id="HEX5574057.1"
                     /translation="MFIDFSSLATSIGIGGLATSIGIGGFLGFLMGYAIKKILKIIIV
                     VSGLLVGIMYYLQYNGLIALNWAKVEATLGSAMANFNGFSLNTPFFPGISDQILDAIS
                     NSGIPLTGGFAAGFAFGLSKG"
     gene            3052..3681
                     /locus_tag="VFX26_05965"
     CDS             3052..3681
                     /locus_tag="VFX26_05965"
                     /inference="COORDINATES: protein motif:HMM:NF034126.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exosome complex RNA-binding protein Csl4"
                     /protein_id="HEX5574058.1"
                     /translation="MKKKTSGMVFPGEYIAEIEEFEAGNHTFTLDGTIRSSVLGKKQY
                     DFKRRTIKIDPINPQELPKVGDVVMGFVEMLFGSMISVKLFSVNNKLHTSGLSAIASA
                     RIGNNKGWNRDRYNRKPKSIYRIGDIIRGQITSLMNSSIHIAVDGTDFGLLYSLCLNC
                     GGDTVRINNGIKCIECGSYEEKRVANDYGTSLLKPSTKHELRKDQYRSH"
     gene            3736..4806
                     /gene="speY"
                     /locus_tag="VFX26_05970"
     CDS             3736..4806
                     /gene="speY"
                     /locus_tag="VFX26_05970"
                     /EC_number="2.5.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyhypusine synthase"
                     /protein_id="HEX5574059.1"
                     /translation="MNDAHSFTGKKIEPPIISKNMTITQLVDFFGSTGYNARRLFEAA
                     KIMKEMIDSGCTICLTLAGALTPIGMGNTIKTLIENGFVDWIVTTGANVYHDLHFAYD
                     LPVRQGHFQVDDDVLFSKQIVRIYDVYIKEVGTLQAQDIIIQREVKKIEKNFAKSYST
                     ADMSHKLGKAAFENSTNPEKSFLASAFKNDVPVFIPAISDSSIGLNMLPLIFEDVTRF
                     PNVMLDIAESTAILWKSKVSGGIELGGGVPKNFFQQTGPALYQILKLKEGGHDYVIQI
                     TDARPDTGGLSGATIQEGKSWGKIKTSHRNNVIVYGDSSICFPIICSYVLSECKKRPR
                     KRLYSKKNGWVVEMKKEYLKNK"
     gene            5105..>6331
                     /locus_tag="VFX26_05975"
     CDS             5105..>6331
                     /locus_tag="VFX26_05975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family metallopeptidase"
                     /protein_id="HEX5574060.1"
                     /translation="MLNYSNIRLGKWDLRDLVDDRSTGNFVKLVDNIKKHVKDFEDNR
                     HILKPDLNSSSFERLVHEIETILETLSRVNSFAQLKYSADTSSNEAAALVLETEKLSS
                     QISNQILFFDLWFKKGLDKNNAQRLIDSISAVYREYLKHKRLIAKYSLNESEEKIINT
                     LEVTGPSALVKIYDRMTNNFEFTVIKKHGNRKRTKIFTNKEKLLSLVRSSKANERESA
                     YKALFKTYEKNSGVLGEIYQNLVTQWRDENISIRGFKSPISVRNIHNNIDDTTVEILL
                     AVCKENANLFHDYFIEKAKLIGMKKLRRYDLYAPISSKNIPKFTFKNATRLVLDTFHK
                     FDPSFGLYTERLFKENHIDSEIRNGKTGGAFCYTVAPKRTPYVLLNFDGMMRDVSTMA
                     HEFGHAIHSMYASDKPI"
BASE COUNT         2088 a         1073 c         1068 g         2102 t
ORIGIN      
        1 gttcaggatc ttcaatccct tttaaccttg ataaaaatcg ttcttctgca ttaattctga
       61 cagttttaat gcctagatat ttgcttatta attcaggaac cagtgactct tcatttaacc
      121 ttaataatcc gttattgaca aaaacacaag tcaaattgcc acttattgcc ttatttagta
      181 aaacagccag agttgttgag tcgattccac cactaatcgc acatagtact ttatcatcat
      241 gaactttgct tctgatatct ttaatggaaa agtcaataaa accttgcatg gtccaatctg
      301 gttttgcatt acttatagaa tgtgaaaaat ttcttaaaat tctatttcct tcttcagtat
      361 gtgatacttc tggatggaac tggattccat aaaatttttt atttcgattt gcgattgcag
      421 cagaaatgga attatccgta tgtgctagta tttcaaaatc atttggaatg ctttcagctg
      481 catcagcgtg actcatccaa cattttattt tcttattaat tcccttaaac aagtccaagt
      541 tatcatcaat tatcaaatca gcataaccat attccctatt atcaaagcgt cttattttac
      601 catcaaattc atctacaata agttggtgac cataacatat tcctaaaact ggtactccca
      661 tctcaaaaat tttcttatct ggttttggag aaccttttaa atatacactt gaaggaccgc
      721 cagatagtac tattcctttt gggtctaaat ttttaatcaa gcttataggt gaatcataag
      781 gcaagagttc acaataaaca ttcgattcac gaattcgtct acagatcagg tggctgtatt
      841 gtgatccaaa atctagtact acaattttat ccataactac gttaaattcc tttttctaac
      901 attcttgtaa acacccaagt tgctgtgtta aatatctcaa taagccgttc tctttctcta
      961 taattagaaa tcgtaacact tttgatttgt ccattttcgt cattatcaac attatagtca
     1021 atgatttcag attcatctat ttcgcctttt tgaatctttt ctttatcttt tgacttcatt
     1081 ccttctaata ttcggtttaa gaaaaaagat ttgaatggag gagtattaat atttaaattg
     1141 atatcattta ccaacggtat ttttacatag gtggaggtat actctgcgtt tgatatcaga
     1201 agattatctt ttgcacgttt caaggattta atctgtacgc cttgattgtc atcttgtccg
     1261 tactctgtat ttgtagattt tgtagttgaa tcactactag gtttggtttg gacagtttct
     1321 tctttatcaa gggattggta ttcagttgca cttctgtcct tcaaattaga agcagaagat
     1381 tcgagatgtg atgcggttat aaagcttgtt ttttttagca aagaatcaac tattagtaga
     1441 gtgtcacgaa gtttatcgag ctcctctttt ttattggtaa cttctttgac taaccattca
     1501 cgcacttctg ctgcacggcg aatatcatct tctgaaaagg tggacatgac atgattcaat
     1561 atattaaaaa catataatag tttttcacat tatttacaag ggaaagaatt tcttaatttc
     1621 ataactaatt taaatgaata tctcaaggct gagacttgat acctcttatt gtggtagctg
     1681 atttgttaac cagtttggat ttagattgct ttcctagcat ttcaagcaat ttctttgcaa
     1741 attttaactt ttttcgttta agatcaatat ctacgtcttt atcatttgtt gagaattttc
     1801 ttggcatgtt gtcaaaatcc atacctatta aagtaatact ttttgcgctc atttcttcag
     1861 ccaaaaagac gctcctatct ccgtcagtaa atcccccaaa attatatacg ttctccgtcg
     1921 gcattacttg agtcgtacct attactttac taaatttagg aacatatttt tccaaattct
     1981 tcatattatc accgtgagca tggataacca ttatcgctcc aaatttatca gccatcctta
     2041 gatattttgg atttccatca aggtccgaca ccactatatc cggtttaatc ttcttattca
     2101 acaaaatctc aaccacacca tcggcagcta tttttacata ttttttattc ttcttgataa
     2161 attcaatatt tttttccaga ctaggacctg ctccaattac aagtacttcc tttccttgta
     2221 ttttcttttg gatcttagac acctgcaatg cttttctctt tatcatatta ctcagcattt
     2281 cagctgcctt ctgatctgtt tctgtactat atccaaattc cgacctaatc tgctgataaa
     2341 aagggaacca ctctatgaat ttcacattta gaaataaaag aaggttacta atagattgtt
     2401 tgatttacga aagcgatgat tgcagaaaac gattatttcg gacatttttt acataaataa
     2461 ctacttattt attataatct aagatataat tgcaattaag cttgctctga aaaaaccata
     2521 actttatcca gttacaagat ttcatgaaaa atgactatat tacatatatt catggttctg
     2581 ggatagttcg taacgatgtt tatcgatttc agctccctag ctacctctat aggaatagga
     2641 gggttagcta cctctatagg aataggagga tttttgggat tcttgatggg atatgctata
     2701 aagaaaatat taaaaataat catcgttgtc tccggattat tggtaggtat catgtactat
     2761 ttgcaataca acggactaat tgcgctaaat tgggcgaagg tcgaagccac attaggaagt
     2821 gccatggcta attttaatgg ctttagtctt aacactccat tctttcctgg tataagcgac
     2881 caaatcttgg acgccatctc aaattcgggg attccactaa ctggaggttt tgcagcagga
     2941 tttgccttcg gtttgagtaa aggttagaac gtaatattat ggatggattt ttcgatagcc
     3001 ttcttcattt tcgtgtaaca attataatac atctaccgtc atgtacctat catgaagaaa
     3061 aagacatctg gtatggtatt tccaggtgaa tatatagcag aaattgaaga atttgaagcg
     3121 ggtaatcata ctttcactct tgatgggact atcagatcaa gtgtgttagg gaagaagcaa
     3181 tatgatttta agagaagaac cattaaaatt gatccaatta atcctcaaga gttacccaaa
     3241 gtaggagatg tcgttatggg attcgtggaa atgttatttg gatctatgat atcagtaaag
     3301 ttattttctg ttaataacaa actgcatact tcaggcctat ctgccattgc ttcagcgaga
     3361 attggaaata ataagggatg gaatcgagat cgatataata ggaaaccaaa atcgatttat
     3421 cgaattggcg acattatcag gggtcaaatt accagtctga tgaattcttc aattcatatc
     3481 gccgtagatg gaactgattt tggcctgtta tactccttat gtttaaactg tggtggagat
     3541 acagttagaa taaacaatgg tataaaatgt atagaatgcg gttcatatga agagaagaga
     3601 gtggcaaacg actatggaac tagtctctta aaaccttcca ctaaacatga gttaaggaag
     3661 gaccaatata gatctcacta gacaataaac actcattcag ataaaatttt taataccttt
     3721 tttgcatgct aatagatgaa cgacgcacat tcatttacag gcaaaaaaat cgaacctccc
     3781 attatttcga agaatatgac cataacacaa ttggttgatt ttttcggatc tacaggttac
     3841 aacgctagac gactttttga agctgcaaag attatgaagg aaatgattga tagtggttgt
     3901 accatctgct taactctagc aggagcgttg actccaatag gaatggggaa tacaatcaaa
     3961 acgcttattg aaaatggctt tgtagattgg atagtaacaa ctggggccaa tgtttaccat
     4021 gaccttcatt tcgcttacga tttacctgta aggcaaggtc attttcaggt tgacgatgac
     4081 gtactctttt ccaaacaaat tgtacgaatt tacgatgtat atataaaaga agtaggcact
     4141 ttgcaggctc aggacattat tattcaaaga gaagtaaaga aaatcgaaaa aaactttgct
     4201 aaatcatatt ctactgcaga tatgtcacat aaacttggta aggcagcttt tgaaaattca
     4261 acaaatccgg aaaaatcatt tcttgcttca gcattcaaaa atgacgtacc agtcttcatt
     4321 cctgcgataa gtgattcttc tataggacta aatatgctac ctttgatatt tgaagatgtg
     4381 acgagattcc caaatgttat gttggatatt gctgaatcaa cagcgatact ttggaaaagt
     4441 aaagtttccg gtggtataga attaggcggg ggagttccaa aaaatttttt ccaacaaacc
     4501 ggacctgcat tataccaaat actgaaacta aaggaaggcg gacacgatta tgtaatacaa
     4561 attactgatg cacgacctga taccggtggt ttatctggag cgactataca ggaaggaaaa
     4621 agctggggca aaataaagac ctctcataga aacaatgtaa ttgtctatgg agattcttca
     4681 atttgttttc caataatttg ctcttatgtc ttgtcagaat gcaagaaacg cccaagaaag
     4741 agactatatt caaagaaaaa tggttgggtg gtggagatga aaaaagaata tttgaaaaat
     4801 aaataatttt tacaacctaa aaatcaaaat tcattcaaca tagaaaggat ggcattttta
     4861 atcagcttgg gtgtccagat gacaccttga ttactgagta ttgtcagcct tcacagttat
     4921 gcctatgttg aaaaccatta tggcataata tttatcatgt ctatgctata taactatatt
     4981 caaaattaac tatattgtgt atactccaaa tagatctggc tcgttctgcg aattatgagt
     5041 tggctgatgt caagaatcag aaaaacatta aagacgatgt acagtttaaa gatgaaaaga
     5101 aacaatgtta aattattcaa atattagatt aggaaaatgg gatcttcgtg atttagtcga
     5161 tgataggtca acagggaact ttgtaaagtt agttgataac atcaaaaaac atgtcaagga
     5221 ctttgaagat aaccggcata tcctaaaacc agatctgaac tcctcgagtt ttgaaagatt
     5281 agttcatgaa attgaaacta ttctggaaac tctcagcaga gtcaatagtt ttgcccaact
     5341 taaatactct gctgatactt catccaatga agctgcagct ctcgttcttg aaaccgaaaa
     5401 attgagttca cagattagta accaaatttt attttttgat ttatggttca agaaaggact
     5461 tgacaagaat aatgctcaac gattaattga cagcatctcc gctgtgtata gggaatattt
     5521 aaaacataag agattgattg ctaaatattc acttaatgaa tcagaagaga agattatcaa
     5581 cactctcgag gtaaccggtc caagtgccct tgtaaaaata tatgatagaa tgactaataa
     5641 ttttgaattt acagtaataa aaaaacatgg aaatagaaag aggaccaaaa tattcacaaa
     5701 taaagaaaaa ctgctttctt tggtgagaag ctctaaagca aatgagagag aatctgcata
     5761 caaggcatta ttcaaaacct atgagaaaaa tagtggggtt ctaggggaaa tttaccaaaa
     5821 tctagtaact caatggagag atgaaaatat ttctattaga ggattcaaat ctcctatttc
     5881 agttagaaat attcataata atatagatga taccacagta gagatacttt tggcagtttg
     5941 taaagaaaat gcgaacctat ttcacgatta ttttatcgaa aaagctaaat taataggtat
     6001 gaaaaaacta agacgctatg atctctatgc tccaatttca agcaaaaata tccctaaatt
     6061 tacctttaag aatgctacaa gactagtctt ggatactttt cataaatttg atccaagttt
     6121 tggcttatac acagagcgct tatttaaaga aaatcatatt gattctgaaa tcaggaatgg
     6181 aaaaacaggt ggtgcatttt gctacactgt tgccccgaaa aggactcctt atgtactctt
     6241 aaattttgat ggaatgatga gagatgtttc aactatggct catgaatttg gacatgcaat
     6301 acatagtatg tatgcttccg ataaaccaat t
//
LOCUS       DASUMD010000220         6396 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_192685, whole genome shotgun sequence.
ACCESSION   DASUMD010000220 DASUMD010000000
VERSION     DASUMD010000220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6396)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6396)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6396
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_192685"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(20..214)
                     /locus_tag="VFX26_05980"
     CDS             complement(20..214)
                     /locus_tag="VFX26_05980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574061.1"
                     /translation="MIVKTIKVIMVHGYRYGHLSNTEQIKGKQETEGPLLSLDSAGSV
                     YINHNYNYKKPAKLIHDSIF"
     gene            complement(700..1524)
                     /locus_tag="VFX26_05985"
     CDS             complement(700..1524)
                     /locus_tag="VFX26_05985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574062.1"
                     /translation="MRHFIIALAIFVSLFAMVPMTTTEIFAQFGTMSTLQNIDATYAV
                     SIVPGAAQKDNTYHYYPPVIAVPTDTMVAWFNNDFGQPHTVTSGEPEAADEGSVFHSG
                     IMPATANSFFQFKFTKPGEFLYHCNIHPWRVASVSASDAYFTGNGFKIGIGSGATWNI
                     TTHPRVLLDIEPQTIPLDKTTPITYNVTISEGQNNNTLFSRYFTTAGDSLPLELISSQ
                     DNQTTSYGPDFSSSGAYHIQSGFNKGSSYPINVEIVSINNKPLENPMKVLFELKTT"
     gene            complement(1969..2526)
                     /locus_tag="VFX26_05990"
     CDS             complement(1969..2526)
                     /locus_tag="VFX26_05990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574063.1"
                     /translation="MDISIYPKDVQTQFLVTVLIVGAIYLVSISISAGVSSASNEQLE
                     YNITTGKINSTLKNEEENKMWLLSGSWKSNLFINTKFNHTNPAKFSAKINMVMANGSL
                     PHKHKISHFMLTNISTTDNSTEYEGFAAVSMKLGPVFTIPVIIKNYHNETISISFESL
                     HDITLDQKNVISHFGGKPISGIFYR"
     gene            3026..3427
                     /locus_tag="VFX26_05995"
     CDS             3026..3427
                     /locus_tag="VFX26_05995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574064.1"
                     /translation="MKRKSIDSMMLGLAAISVILFSHGIVSYAQDNYSNATASVNTSI
                     STSNSTLANNATSQSGNPTVQSIDEAIKSLNDGDKDAAKKLLLKAEESLEGKSDLVDA
                     EKRVEASLAALKDGDINAAISHAEEAKKNLS"
     gene            3543..3908
                     /locus_tag="VFX26_06000"
     CDS             3543..3908
                     /locus_tag="VFX26_06000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574065.1"
                     /translation="MANSEYEDSKELDAMGIKGETAEKQFEATFFVSAAVANFILAAL
                     VIKSNRNVIPYLASAGISAGLIAIYIASRTVGVPVVGVEYYVGRLDLISKGFQAAAIV
                     LSVIAIRNIRKFIALKEVA"
     gene            4048..4305
                     /locus_tag="VFX26_06005"
     CDS             4048..4305
                     /locus_tag="VFX26_06005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574066.1"
                     /translation="MDTNLVILVIHILAGFFLVYVAARAYKRTKYIPMLLLTFGFFLI
                     IIGDTILGDLLNISDQSTGETFEEIVETSGFILIIIAVIKS"
     gene            4302..4649
                     /locus_tag="VFX26_06010"
     CDS             4302..4649
                     /locus_tag="VFX26_06010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574067.1"
                     /translation="MKNDSESKDILAVLTDEASLQIMNLLDKRELSARVISSTLNMPI
                     SSTYKKIKKLDQLKLIRITKVIRTLEGMDESFYTLSIKEINVTYKNNTFSFAIQQKSF
                     DDKIVRLWQKFKN"
     gene            complement(4836..5567)
                     /locus_tag="VFX26_06015"
     CDS             complement(4836..5567)
                     /locus_tag="VFX26_06015"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEX5574068.1"
                     /translation="MDFLTFALQEQISARVTKTLKDGIQLNMSTEESKKFLRRHVNTR
                     TNLVIMIIDINNSTQMSLTLPDFKFALILQTFAQEVSVVVSGYGGFVFKYEGDAVIVI
                     FPAEFNQIKACKNALNCSTAILEILKKAINPVFKENKLPEITVRTGLAYGSTLVVLYG
                     KSLEKAHVDITGSSISLAAKIASFAKPNQVLVGELIYNIIENSKDKDSDKTKFEEVRL
                     DPIKWKYLSQSDPQSFYHVYQYIVN"
     gene            5775..6344
                     /locus_tag="VFX26_06020"
     CDS             5775..6344
                     /locus_tag="VFX26_06020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574069.1"
                     /translation="MKHELGGEKIKKELYYAVREIGEDKIQKDITSRIQSSREYIDVL
                     MNKSIERLIATDQSLDYDRVIGTLSEALLHFMLTISTLPSERKIRLNSELVIDVVIPN
                     LRNLKTNPSKSIIVQFIKQRPELNNVSKLQFIQPNQENIWIVSYKPLSDVKYKTYSIF
                     PDSYSNIIIDIHEFLKQTGDKSLRFIPLK"
BASE COUNT         2139 a         1108 c         1076 g         2073 t
ORIGIN      
        1 caatgccatg ccatcaaaat cagaatattg aatcatgaat taattttgct ggttttttgt
       61 agttataatt gtgattgatg taaacagaac ctgcagaatc taaagataat aatggtcctt
      121 cagtttcttg tttgccttta atttgctcag tgtttgataa atgtccatat ctatatccat
      181 gaaccattat aacctttatt gtctttacta tcatagagaa cacctctttc cacgccagtc
      241 gttctaattc atcaaaacaa gaattgataa actggtcata ggaaaataaa ttgtttctat
      301 gtgcacgacc acgtggtgaa tcaagtgtcc ataaaatact atacggattg ggtctgctct
      361 atattgcatg tttaactgct agtcatcatt atcttggtag atatttagca ctcgaaaact
      421 tcagttgtgt gcccaacaaa tgtatggcat ttacaccttt tgcaataggt atagccatcc
      481 ttgtcagtaa gatgaaattc tctagcgtga taacacctaa cgcatataat ggatttgttc
      541 aggatttctt gggtcatttt cccttataaa taagtaggat gcctagcagt ataaggactc
      601 agtctgcact gaaatacact gcaagtatga ctattctatt tgagaaaaca ccaacgaaag
      661 tctcctccac caaacttgga taatacagaa ataaaataac taagtagtct taagttcaaa
      721 taagactttc attggattct ctagtggttt gttgtttatc gagacaatct caacgtttat
      781 tgggtatgaa gagcctttat tgaaacctga ttggatatga tatgctccac tactgctaaa
      841 atctggtcca tatgaagtag tttgattatc ttgtgaggaa attaactcaa gcggaagaga
      901 gtcgccggca gtagtaaagt aacgagagaa taatgtgtta ttattttgac cctcactaat
      961 agtcacattg taagtaatgg gagtagtttt atctagtggt atcgtctgtg gctcaatatc
     1021 cagcaagact ctaggatgag ttgttatgtt ccatgtcgcc cccgaaccta taccaatttt
     1081 aaaaccatta cctgtgaaat atgcatcgct tgctgataca gatgctaccc tccatggatg
     1141 aatgttacag tgatatagaa actcgccagg tttagtaaat ttaaattgga agaatgagtt
     1201 cgcagtggct ggcattattc ccgaatgaaa tactgagccc tcatcggctg cttctggttc
     1261 cccactggtt actgtgtggg gctgtccaaa gtcgttatta aaccaggcta ccatagtatc
     1321 tgtaggtacc gcaatcactg gaggataata atgatacgtg ttgtcttttt gagccgcacc
     1381 aggaactatg ctaactgcat aagtagcatc aatattttgt aaagtagaca ttgttccaaa
     1441 ttgagcaaaa atttccgttg ttgtcattgg taccatagca aataaggaaa caaatattgc
     1501 cagtgcaata ataaaatgtc tcatatctca aacgaattgg tttttaatat ttaaggtttt
     1561 acaaggtaaa cccatttcat atgataacat ttcaggttta accttaatgc atctagcaaa
     1621 tcatcataag aagtttgttc ttaatctagg gagaatttat ttgcttgtgc tgttcgtaga
     1681 gaaactatgg gtttttcata tttctctggt attgttaagt gaccttttgt ttatcattag
     1741 atacaaatga gacataccag tcttctctcc cactaattga cccttgctaa attgtataca
     1801 ctagtaataa gagacaaaat gctaattacc aatttattag aaccctaata catgcaggta
     1861 ctaatcccga cgactccaga ccaaccaaat ttgcactcaa acattcccac ttgaagaact
     1921 agtttatcaa taggaactaa gcaattctca tttccaaata tactcccttc atctatagaa
     1981 tattcccgat attggttttc ctccaaagtg actgattaca ttcttctgat ctaaagttat
     2041 atcatgaagt gattcaaatg aaatactgat tgtctcattg tggtaattct tgattattac
     2101 aggaatagta aaaactggac ctaacttcat acttacggca gcaaaacctt catactctgt
     2161 tgaattatct gttgttgata tgttggtaag cataaaatgt gatattttgt gtttgtgagg
     2221 caaagaccca tttgccatta ccatgttaat tttagcagaa aactttgcag gatttgtgtg
     2281 attaaattta gtattaatga ataggttgct tttccaacta cccgagagta accacatctt
     2341 gttttcctcc tcatttttca gagtactatt tattttccct gtagtaatgt tgtattcaag
     2401 ttgttcattc gacgcacttg agacgccggc agaaatgcta attgacacca gatagatagc
     2461 ccccacaatt agtactgtta ctaaaaattg cgtttgaacg tcttttggat agatactgat
     2521 atccatattg tgtaataaca accgatataa gggatttatg cggtaggttt gcactgcatt
     2581 gcattttaat gcattattaa aacccagaat atccataaac gtcaaactga gacaatacaa
     2641 gttagtatgt aaaacgcatt attcaaaaca gtatctctag aaaagagctt ctctcgcaag
     2701 atactatact ttgatcaaaa ataaaatatc aaaatcataa acctcgtacc tcccaactat
     2761 gacatgtata aattaagacc aaaataggaa catctctcta ctaatgctct actaataaat
     2821 aaattcgttt ttgatacgtt tagtaataaa tttaatttaa aacattttac ttagaattat
     2881 tgcaattatt gattatttat ggaaataaat ttaaagagaa ctccgaatat atataaaatc
     2941 attacctata aaaatattat tactattctc agtaattgag atccaaagta attttattat
     3001 tccttttaaa acttaaacgc gtatcatgaa aagaaaatca atagactcta tgatgttggg
     3061 cttggcggca atttccgtga ttttattttc acatggaatt gtttcatatg ctcaggacaa
     3121 ctattcgaat gcaactgcga gcgtcaatac ttcgatttca acttctaatt ctaccctagc
     3181 gaataatgcg acatctcaat ctggtaatcc aactgttcaa tcgatagatg aggcaatcaa
     3241 gtcattaaat gatggtgata aagacgctgc taaaaaatta ctgctcaagg cagaagaatc
     3301 tttagaaggt aaatctgatc ttgtggatgc tgaaaaacgt gtcgaagctt cattagccgc
     3361 tcttaaggat ggcgatatca acgcagctat ttcacacgca gaagaagcaa agaaaaatct
     3421 atcataatta ccatatttgg taattatttt gtgaccagga agattttaaa ttgagaaata
     3481 ataaactcat tgcctattcg ttaacagggg tcctttttat tatcggagtt gtatattgct
     3541 tagtggcaaa cagcgaatac gaagattcta aggagttaga tgctatggga ataaaaggtg
     3601 aaacagctga aaaacaattt gaagcaacat tctttgtatc tgcggcagtg gcgaatttca
     3661 tacttgctgc tcttgtcata aaatcaaaca gaaacgtaat accatatctc gcttcagctg
     3721 ggatctcagc gggacttata gctatctata tagcgtcgag aacggtaggt gtcccggtag
     3781 ttggagtaga atattatgtg ggacgtctag acctaatttc gaaaggcttc caggcagcgg
     3841 cgattgtttt atcagtgatt gccatccgca atattcgaaa attcattgca ctaaaagaag
     3901 ttgcctagca taaaatgcta gttgcaatta tttttctcga ctattcagaa gtttaaactc
     3961 aatgggtgtc taagtttaaa gtcaagtcga accatttatt tgtaataact aaaatatttg
     4021 taagcgtatg atgaggtagt ttcgtaaatg gatacaaatc tagtaatctt agtaatccac
     4081 attctggcag gtttcttttt ggtatatgta gctgctaggg cttacaagcg aacaaagtat
     4141 attcctatgc ttcttcttac gtttggtttc tttctcataa ttattggcga cactattctt
     4201 ggagacttgc tgaatattag tgaccaaagt acaggtgaaa cattcgagga aatagttgag
     4261 acatctggtt ttatactgat aataattgcc gtgataaaga gttgaaaaat gattcagaat
     4321 caaaggatat tctggctgta ctcacggatg aagcctcatt acaaataatg aatttgctcg
     4381 acaaaagaga actaagtgca cgcgtgattt cttctactct gaatatgcca atctcatcaa
     4441 cttataaaaa aataaagaag ctagaccaac tcaaattaat aagaataaca aaagtaataa
     4501 gaacattaga aggaatggat gagtcatttt atactctgtc aattaaagaa ataaacgtta
     4561 cttacaagaa taatacattt tcatttgcta ttcaacaaaa gtccttcgac gacaagatag
     4621 ttaggctttg gcaaaaattc aaaaattgaa atccaattgt attatggtca atttttggtt
     4681 aaaactcaaa tcatttagtt cacctgataa taacaacgta aaatgcattt gatcatacac
     4741 cttattaaat caacaacata aacataatat taaaaattgg caggagagca agaagcgata
     4801 atacatattc taatttcttt ttctttatta acagtctaat ttactatata ttggtaaaca
     4861 tgataaaaac tctgcggatc agattgagaa aggtacttcc attttatagg atccaagcgt
     4921 acttcctcga acttggtctt gtccgaatcc ttatctttcg agttctcaat aatattgtaa
     4981 ataagttcac ctactaacac ctgattcggt tttgcaaaag atgcgatctt agctgcaagg
     5041 ctaatactgg agcctgttat atctacgtga gctttttcta aacttttacc ataaagtaca
     5101 accaaagtgg atccataagc taaccctgtt cttactgtaa tttctggtaa tttattttcc
     5161 ttaaaaacag gattgattgc tttttttaga atctctagta tagcggttga acaatttaac
     5221 gcatttttac aagcttttat ctgattaaac tcggctggaa aaattacaat aacggcatcc
     5281 ccctcatatt tgaaaacaaa gcctccatag ccagaaacaa cgacgcttac ttcctgggca
     5341 aaagtttgta gtattagagc gaatttaaaa tctggtaaag tcagactcat ctgtgttgaa
     5401 ttgtttatgt ctattatcat aatgacaaga tttgttcttg tgtttacatg tcttcttaaa
     5461 aatttcttgg attcttctgt ggacatatta agctggatac catcctttag ggttttggtt
     5521 actctagcac tgatttgttc ctgtaacgca aaggtcagga aatccatgat atctctattt
     5581 agaacttgat gaataactta aatttagtga tcattactaa tccctcatta attccaaatt
     5641 ttttcctatt catatttata aggaccttat agaaatctgt tgagaaaaat cagtatttaa
     5701 ttatgttggg ttcaatccga aataacccag tatgacaagt tatataggca aattgagtag
     5761 gttatagttt acccttgaag catgagcttg gtggagaaaa gattaagaaa gaattgtact
     5821 atgcagtaag agaaataggt gaagataaaa ttcaaaaaga tatcacctca cgcattcaat
     5881 cctcaagaga atacattgat gtcctaatga ataaatccat tgagaggttg atcgccactg
     5941 atcaaagctt ggactatgac agagtaattg gaaccttgag cgaagcactc cttcatttca
     6001 tgctaaccat cagtacttta ccatcagaaa gaaagatacg acttaatagc gaattagtta
     6061 ttgatgttgt tatccctaat ttacgaaatt tgaaaacaaa tccttcaaag tcgattattg
     6121 tacaattcat aaagcaaagg ccagaattaa acaatgtatc aaaactccaa ttcatccaac
     6181 ctaaccagga gaatatatgg atagtatcct acaagccttt gtctgatgta aaatacaaaa
     6241 cttatagcat ctttcctgat agttactcaa acataataat agatatccat gaatttctaa
     6301 aacaaacagg agataaaagc cttagattta ttcctttaaa ataaattcag ataaatcata
     6361 tcactgatat tagtgccaaa ctgtgaccaa gtaaaa
//
LOCUS       DASUMD010000221         3383 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1298947, whole genome shotgun sequence.
ACCESSION   DASUMD010000221 DASUMD010000000
VERSION     DASUMD010000221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3383)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3383)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3383
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1298947"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..331)
                     /locus_tag="VFX26_06025"
     CDS             complement(<1..331)
                     /locus_tag="VFX26_06025"
                     /inference="COORDINATES: protein motif:HMM:NF019546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0008534 - oxidized purine nucleobase
                     lesion DNA N-glycosylase activity [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA glycosylase"
                     /protein_id="HEX5574070.1"
                     /translation="MLLDSRFNPEISINSGQMFLWKKYENSWYGTYGNHILKFTITNN
                     EVEFCSTPRFDNWEHFIFRLDDNIQDIFTNFSNDTILLKLLKKYRGLRLIRQDPYQCM
                     ISFACSSN"
     gene            complement(597..1916)
                     /locus_tag="VFX26_06030"
     CDS             complement(597..1916)
                     /locus_tag="VFX26_06030"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase family glycosylhydrolase"
                     /protein_id="HEX5574071.1"
                     /translation="MNKKLNLNEFNAREMAGNYFIMLIFILNQMHSISLTRPFVSSKL
                     VLLVVIFTLLLTNSFVLYSHGQETNQIFFGVNMKGYHTSMPQTRTIGSIMPANYFDDS
                     FKLISEAGMNHVRFVFYWESYERDPTNFMLELQSVAEAADKYNVNVMYDNHQFHTSSW
                     FNPQRGTGFPSFLFQDNPSYPAGNGGGPKYAPAKAWWTDWWNRSVTDTNGTDGWTLHA
                     EFLKKIVDTLDSHKSTLGYEILSEPQVHSADQWEKIGKYNTFMVNELRKLTSKVLAYS
                     MNIPVDLKSPINLIPENLAKMKPQNSTNIVFKISIYGLPTESSYQQARMNTFLKASNI
                     TGVPLYIGEWNNVLREQTINEEGTSVFEINPFESDITQQEADLFVKTFKDLGIWGLAY
                     WKWDFVSLQTPNFNLISVADNGDITTNKYFRQLKIALETNYQNQTNQ"
     gene            complement(1922..3184)
                     /locus_tag="VFX26_06035"
     CDS             complement(1922..3184)
                     /locus_tag="VFX26_06035"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX5574072.1"
                     /translation="MKITILGSGKEVGRSGFLVTSDNTNILLDYGVMLKKEPSFPIHV
                     RPKDISTVVLTHAHLDHSGYIPSLFLSNSNISVLGTNPTFELSDLLIEDMLKISGFYL
                     PFEYADLNNMMSHSKTLQYKERNLINNMQIALYESGHIIGGSSILIESEGKRIFYTGD
                     INTRGSKLLRSADLDLPEVDVLIIESTYSQTEQTPRDESEKNLVHFAYDVVERGGTLF
                     IPAFSVERAQEIACVLKANNFKYRISMDGMALKANEIMLRNPSFLRDAEGFKKIISEI
                     EWVKGWQRRKQLVKEPGVIISPAGMLVGGTAIFYLQEIAKNPSNGIALVSYQGKGTPG
                     RLLLEKGLVSYNGKTRKSLADVNHFEFSGHSSRKELFEIVDKIKGNPRVLTVHGDDMS
                     CTKFASEIKEKYGFDAIAPDNGQIMEVN"
BASE COUNT         1020 a          614 c          533 g         1216 t
ORIGIN      
        1 tattactcga acaggcaaaa gaaatcatac attgatatgg atcctgacga attaagcgca
       61 accccctata tttttttaat aatttaagta aaattgtatc attagaaaag ttagtaaaaa
      121 tgtcttgaat gttatcatct agtcgaaaaa tgaaatgttc ccaattatca aaccttggag
      181 ttgaacaaaa ttctacttca ttattcgtga ttgtaaattt caaaatatga tttccatacg
      241 ttccatacca tgaattttca tattttttcc acaaaaacat ctgcccacta ttgatactaa
      301 tttcaggatt aaatctagaa tctaacagca tgtgagtata ttactcataa atattattat
      361 tagtctttag taattctttg gttttcttca aatctgtttc cagtgcttcg attattttcg
      421 gaatttgctt tagagaacaa tttaaacaga tacattgcaa cgatagcgga tatgtaaaat
      481 atttttcttg catctcgata tcttttttgc agcttatgca tttttttaat ttatatggat
      541 cggtattttt tattatcatg tagaaatcaa tcgtatatta tgcttatatc attgtcttat
      601 tggttagttt gattttgata attagtctct aatgcaatct tcagttgtct aaaatattta
      661 ttggtagtta tatctccgtt atcagctact gaaatcaaat taaagtttgg agtttgtaat
      721 gaaacaaagt cccatttcca gtatgctagt ccccaaatac caagatcctt aaaggtttta
      781 acaaatagat ctgcttcctg ctgagttatg tcactctcaa aaggatttat ctcaaatact
      841 gatgttccct cttcgttgat agtttgctct cgtaagacat tgttccattc gcctatgtat
      901 agtggtacgc ctgtgatatt agaagcctta agaaaagtat tcattctggc ctgctggtat
      961 gagctttctg ttggtaagcc gtatatactt attttaaaaa ctatatttgt actgttttgt
     1021 ggcttcattt tagctaggtt ttctggtatc aagtttatag ggctttttaa atcaacaggg
     1081 atattcatgc tgtatgcaag taccttgctc gtaagtttcc tcaactcatt aaccataaat
     1141 gtattatact ttccaatctt ttcccattga tctgcactgt gaacttgagg ttcgctgaga
     1201 atttcgtaac ctaatgtact tttatggctg tctagtgtat caactatttt tttcaaaaat
     1261 tcagcatgta gtgtccatcc atcagtacca ttagtgtctg tcacagatct attccaccaa
     1321 tccgtccacc aggcttttgc gggagcatat ttgggtccac caccatttcc agcaggatag
     1381 gatggattgt cttgaaagag aaaggagggg aatcccgttc ctctttgtgg attaaaccaa
     1441 gaggaagtat gaaattgatg gttatcatac attacattaa cgttgtactt atctgcagct
     1501 tccgctacag attgtagttc aagcataaaa ttagttgggt ctctttcgta agattcccaa
     1561 taaaatacaa accttacatg attcatacca gcctctgaaa ttagtttaaa gctatcgtca
     1621 aaataattcg ctggcataat acttcctata gttctggttt gcggcatgct tgtatgatat
     1681 cctttcatat ttacgccaaa aaatatttga ttagtctcct gaccatgcga ataaagtaca
     1741 aatgaattgg ttagtaacaa ggtgaaaatt acaaccaata aaaccagttt agaactaaca
     1801 aagggtcttg ttaaactaat actatgcatt tgatttagga tgaatatcaa cattataaaa
     1861 tagtttccag ccatttctct tgcattaaat tcattcagat tgagcttttt gttcattttt
     1921 cttaatttac ttccataatc tgcccattat ctggagctat tgcatcaaac ccatattttt
     1981 ctttgatttc actagcaaac tttgtacatg acatatcatc accatgaaca gtaagaactc
     2041 ttggattgcc tttgattttg tcaacaattt caaatagttc ttttctgctg ctatgtccgg
     2101 aaaattcaaa atgatttaca tctgcaagac ttttccttgt ttttccatta tatgatacga
     2161 gtcccttttc aagcagaaga cgacctggtg tacctttacc ctggtacgat actaatgcta
     2221 taccattact aggatttttt gctatttctt gcagatagaa aattgccgtt ccacctacaa
     2281 gcattcctgc aggagagatt attactcctg gttcttttac caactgtttt cttctttgcc
     2341 atcctttaac ccattcaatc tccgatataa tttttttaaa tccttcagca tctcgtaaaa
     2401 atgatggatt tcttagcatt atttcattag cttttaatgc catcccgtcc atggatatcc
     2461 tatatttgaa attgttcgcc ttcaaaacgc atgcaatctc ttgtgctctt tcaactgaaa
     2521 acgctggtat gaagagggtt cctcctcttt caactacgtc gtaggcaaag tgcacaagat
     2581 tcttttccga ttcgtctcgt ggagtctgtt ctgtttgaga ataggtactt tcaataatta
     2641 agacatcaac ttcaggtaaa tctaaatctg cagatctcaa tagttttgac cctctagtgt
     2701 ttatgtcacc agtataaaaa atgcgcttac cttcactttc tataagtatt gaagaccccc
     2761 ctatgatgtg cccagattcg tataaagcaa tttgcatgtt attaatcaag tttctttcct
     2821 tatactgtaa ggtctttgaa tgactcatca tattattcaa atctgcatat tcaaaaggca
     2881 aataaaatcc agaaattttg agcatatctt caataagtaa atcggaaagt tcgaaagttg
     2941 gatttgttcc taagactgag atattagaat tggataaaaa aagtgacgga atatatcccg
     3001 aatgatccag atgagcatgc gtaagaacga ctgtgctaat atcttttggt ctaacatgaa
     3061 ttggaaagga tggttccttc tttaacatca ctccataatc taacaaaata ttggtgttat
     3121 ctgatgttac caaaaatcct gaacgcccta cttctttgcc ggagcctaaa atagttattt
     3181 tcatttgata agcatttgtt taagcagacg ggttttaagt ctttcatttt tctcctttta
     3241 gcaggaatta ataacaaatt aaaaacgaca gaataaaatt agagttactg taattttaaa
     3301 agttgtcaag aatcgtcatt acaggcaatc cgggagttgg aaaacgtact atcagtgggt
     3361 tgttgtcaaa aagactagga ttt
//
LOCUS       DASUMD010000222         2539 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_748632, whole genome shotgun sequence.
ACCESSION   DASUMD010000222 DASUMD010000000
VERSION     DASUMD010000222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2539
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_748632"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..618
                     /locus_tag="VFX26_06040"
     CDS             <1..618
                     /locus_tag="VFX26_06040"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX5574073.1"
                     /translation="CNLIGNNCYGFQLDVSKKKSLLHFARSISKDFNNVDILINNAGF
                     PFERKIWFKNVHDISEIELMNIIRVDLAGSFRITREILKIMMKKRRGVIISIASTPAI
                     SGHNYGSPYSIAKAGLISLTKHIALEYGQYNIRSYSVALGDIDTPAMRKSLSKKEMLK
                     AKKENTMKRLGRPEEIAKSIVSLAGENFSFSTGNTIIIDGGKVII"
     gene            631..1776
                     /locus_tag="VFX26_06045"
     CDS             631..1776
                     /locus_tag="VFX26_06045"
                     /EC_number="2.1.1.195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt-precorrin-5B (C(1))-methyltransferase"
                     /protein_id="HEX5574074.1"
                     /translation="MFQSTDDIKERDQPVGKKRSLRTGYTTGTCAAAATKAALSTLVN
                     GEKLSKVNVSLPKDKQIKIDIAWIKHEVDKSVTAAVIKDGGDDPDVTNGAEVCATVSL
                     SETSNKIVIDGGMGVGRVTKPGLGLEIGKAAINPTPLRMINHAIEEILNQQKNKKYGL
                     SVIISVPNGEEIARKTDNPRLGIMGGISILGTTGIVIPYSTASFAASIRQSIDVSKAM
                     GSDSVILTTGGRSEDFARAIYGNSIADHAYIQIGDFIGFSIKQCAIKKIRKAYVVGFV
                     GKLTKMAMGIKQTHVKGSHVDMNFLSDLANRSGANKELVQQIKLANTARHVSELIDKS
                     GLSVFYDILCKEVHNHLTKYSQSHLQIKIILLDFNGKIIGNYPQDHT"
     gene            complement(1794..2051)
                     /locus_tag="VFX26_06050"
     CDS             complement(1794..2051)
                     /locus_tag="VFX26_06050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor eIF-1A"
                     /protein_id="HEX5574075.1"
                     /translation="MPQQGELLGRVIKLVGGDNIIVKCTDGKVRTCRIRGKIKRRMWI
                     REHDLVLIAPWDFQTDKADIVWRYISAHAEKLQRDGFLEGI"
     gene            complement(2294..>2539)
                     /locus_tag="VFX26_06055"
     CDS             complement(2294..>2539)
                     /locus_tag="VFX26_06055"
                     /inference="COORDINATES: protein motif:HMM:NF026183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-binding protein"
                     /protein_id="HEX5574076.1"
                     /translation="LSEIKGPKMIKNNFEPKFFLKNMLKDVQLLNESAKHNGTSLSFA
                     SLAEQYFRIASNRGYSELDYTAILKLFGEFNNLVSYR"
BASE COUNT          877 a          426 c          475 g          761 t
ORIGIN      
        1 tgtaacttaa ttggcaacaa ttgttacgga tttcaattgg atgtttccaa aaagaagagt
       61 ctacttcatt ttgcccgaag tatctcaaaa gattttaaca atgttgatat attgataaac
      121 aatgctggtt ttccatttga aaggaaaatt tggtttaaaa acgtacatga tatttcagaa
      181 atagaattga tgaatatcat ccgagttgat ttggcaggct cgttccgaat cacgcgggaa
      241 atattgaaaa tcatgatgaa aaaaagaaga ggagttatca ttagtatcgc ctcaacccct
      301 gccatttcgg gacataacta cggttcaccg tactctatag caaaggcagg attgattagc
      361 ttgaccaagc atatagcttt agaatatgga caatataata tcagatcgta ttcggttgca
      421 ttaggagaca tagatacacc agcaatgcga aaatcgctct caaaaaaaga aatgctaaaa
      481 gcaaaaaaag aaaataccat gaaaagattg ggtcgaccgg aagaaattgc taaaagtatt
      541 gtatcccttg caggtgaaaa tttttccttc tcaactggaa atactattat tattgatgga
      601 ggtaaagtaa tcatttaaag agtgaattgt atgttccaaa gcacagacga tatcaaagaa
      661 agagatcaac ccgttggtaa aaagagatct cttagaactg ggtatacaac gggtacctgc
      721 gcggcagcag caactaaagc tgcactctca acgctggtta atggagaaaa attatcaaaa
      781 gtaaacgttt ctcttccaaa ggataagcaa ataaaaatag atattgcctg gattaaacat
      841 gaagttgata aatcagttac agctgccgtc atcaaggatg gaggagatga tcccgatgtt
      901 actaatggtg ccgaagtttg tgcaacagta tctctttcgg aaacatcaaa taaaatagtt
      961 attgatggtg gaatgggagt aggaagagtc actaaaccgg gattaggact cgagataggt
     1021 aaggctgcca tcaatcctac tccactaagg atgataaatc atgcgattga agaaatatta
     1081 aatcagcaga agaataaaaa gtacggatta tcggtaataa taagcgtacc aaatggagaa
     1141 gaaattgcca ggaaaactga taatcccaga ttgggaataa tgggaggtat atcaatttta
     1201 ggaacaactg ggatcgtaat cccatattcg acggcatcct ttgcagcttc aattcgccaa
     1261 agcatagatg tttcaaaagc aatgggttct gattctgtta ttctaactac tggtggaaga
     1321 agcgaagact tcgcacgggc tatttatgga aactcaattg ctgatcatgc ttatattcaa
     1381 attggtgact ttatcggatt cagtattaaa cagtgtgcaa taaagaaaat aaggaaggca
     1441 tatgtagtgg gttttgttgg taaactaaca aaaatggcaa tgggaataaa acaaacacat
     1501 gtaaagggat cccatgttga catgaatttt ctttcagact tggctaatag atctggagca
     1561 aacaaagagc tcgtacaaca gataaagtta gcaaatactg cgcgacatgt tagtgaattg
     1621 attgataaat ctggattaag tgttttttat gatattctat gtaaagaggt ccataatcat
     1681 ctgactaaat attcccagtc tcatttacag ataaaaatca tactacttga ttttaatggt
     1741 aagataattg gaaattatcc ccaagatcac acataacaaa aattaatgtt tttctatatc
     1801 ccctctagga aaccgtccct ttggagcttt tcggcgtgag cagaaatata tctccagaca
     1861 atgtctgctt tatcggtttg aaaatcccat ggtgcaataa gtacaagatc atgttctctt
     1921 atccacatac gtctctttat ctttcctcta attctacatg ttctgacttt accatctgtg
     1981 catttcacaa taatgttatc tccaccgact agttttatga cacgcccaag cagttcaccc
     2041 tgttgaggca atacttcctc ctttagatca gcttcactta gtacttttct ttttcctaat
     2101 ttgaaaacct cagttaaaat tccttataag caaaataaaa acctaatgat tcaccacaat
     2161 gagtagaaat aagaagaggt taatgatcag tattgagaat tgttgaatta tgtcaataat
     2221 tgcttatatg tcatttgttg ttgataactt aactactaat gcttgaggtt aacaaatttt
     2281 cttaatatta tgcctaacga taggaaacca ggttgttaaa ttctccgaat agtttcaata
     2341 ttgcggtata atccaattct gagtaacctc tatttgatgc aatgcggaaa tattgttcgg
     2401 ccaaagatgc aaatgaaaga ctggtcccat tatgctttgc agactcatta agtaattgta
     2461 cgtccttaag catatttttc aaaaagaatt ttggctcaaa attattcttt atcatttttg
     2521 gaccttttat ttcactgag
//
LOCUS       DASUMD010000223         2986 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1632972, whole genome shotgun sequence.
ACCESSION   DASUMD010000223 DASUMD010000000
VERSION     DASUMD010000223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2986)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2986)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2986
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1632972"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..588
                     /locus_tag="VFX26_06060"
     CDS             <1..588
                     /locus_tag="VFX26_06060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEX5574077.1"
                     /translation="KKVLKYPGDINRSILTRVFDEYFYGPQLFKKQHSSTAKFYSGKP
                     LIENDILLVRNSTMKKISNIFDKRIGIVSGRSRIAAEYSMKSIFKFFDINGSVYLEDE
                     KREMGKPDPSALIKSVRIFGVSNAFYVGDSAEDLFMVQRARKISNLDIRLIGICASNA
                     RSNQMRNLFRSNGTSLIVKNVNELPNILNKVRTQF"
     gene            596..1195
                     /locus_tag="VFX26_06065"
     CDS             596..1195
                     /locus_tag="VFX26_06065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazoleglycerol-phosphate dehydratase"
                     /protein_id="HEX5574078.1"
                     /translation="MSDTDKVRTATVNRSTSETTIKLNVNLDGVGKAQITTGLKFLDH
                     LITTFCKYSLVDIEAEVKSHDSILHHLIEDIAICIGQGLDKALGNRARITRFGYAIVP
                     MDDSRSNSAIDLVKRQFSKFELKLERNEVEGIVKEDIEHFFRSLLQNLVACTHILVEY
                     GEDDHHKLESAMKSFAIAFRNAAAIDQRRKGLPSTKDMM"
     gene            1196..1816
                     /gene="hisH"
                     /locus_tag="VFX26_06070"
     CDS             1196..1816
                     /gene="hisH"
                     /locus_tag="VFX26_06070"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEX5574079.1"
                     /translation="MTKIAIFDFGAGNLFNLHQSLLRNGAHTVDIIRTLNELENYDGL
                     VLPGVGNFDSAISSIQKDSIALNAAVESGIPILGICLGLEMLFNKSEEGILDGLKVLD
                     GDVLMLPKTKVKVPHIGWNNLRIVKTECNLLKGIPQDSWVYFVHSYHIEPQDENLIAA
                     ITDYGSKLPVVIERSNLFGTQFHPEKSGKIGAQIMKNFVNICEKSE"
     gene            1813..2523
                     /gene="hisA"
                     /locus_tag="VFX26_06075"
     CDS             1813..2523
                     /gene="hisA"
                     /locus_tag="VFX26_06075"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003949 -
                     1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HEX5574080.1"
                     /translation="MKVLAAIDIMNGDVVRLTKGDQSTKKVYSNDPVQVAKKWAKDGA
                     DMLHIVDLDAAFGNESSNLSIISEILHSVNIPIQIGGGIRNTEIFEKIAKMGFSKIVV
                     GTMAYRNVNELCLLSKNYGDKIVISLDEINGKVMIEGWKSSSDYKVEDAINKFNKLGI
                     SNFLLTSIIKDGTLSGPDIVTLNSVNTDRKSKIIASGGISSLVDVLRVRSIGCDSVIL
                     GKALYEERLDIKKVKAIA"
     gene            2523..>2986
                     /locus_tag="VFX26_06080"
     CDS             2523..>2986
                     /locus_tag="VFX26_06080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HisA/HisF-related TIM barrel protein"
                     /protein_id="HEX5574081.1"
                     /translation="MPLSKRIIPCLDVDNGRVVKGIKFRGVKDAGDPVELAKKYSDQG
                     ADELVFLDITASKQDREIMKSMVRKVARVIDIPFTVGGGIKTLSDAREILLNGADKVS
                     INTATVKNPELVTDLMKIFGRQCVVVAIDVKRNYDVGEKHTVMHGPDKDFYF"
BASE COUNT         1044 a          431 c          650 g          861 t
ORIGIN      
        1 aagaaagttt taaagtatcc tggagatatt aacagaagca ttttaactcg agtctttgac
       61 gagtactttt acgggcccca attgttcaaa aaacaacaca gctcaactgc taaattttat
      121 tctggcaagc cgctaattga aaatgacata cttttggtta gaaattcgac catgaagaaa
      181 atatcgaata tttttgataa aaggatagga attgtttctg gcaggagtag aatagctgct
      241 gagtattcta tgaagtcgat ctttaagttt tttgacataa atgggtcagt ttacttagaa
      301 gacgaaaaaa gagaaatggg taaaccagac ccttcggcgc tgataaaatc cgtaagaatt
      361 tttggagtca gcaatgcttt ttatgttgga gactctgcag aggatttgtt catggtacag
      421 agagcaagaa aaatatccaa tctggacatt agattaattg gaatatgtgc ctctaatgca
      481 agatcgaatc aaatgaggaa cctattcagg agtaatggaa cttctttaat agtcaaaaac
      541 gttaacgaat taccgaacat attaaataaa gttaggaccc aattttagat accaattgtc
      601 agataccgat aaggttagga ctgcgacagt gaacagaagt acatctgaaa caacaataaa
      661 gctaaatgtt aatcttgatg gcgtgggtaa agcacagatc accactggat tgaaatttct
      721 agatcacctc ataacaacat tttgcaaata cagtcttgtt gatattgaag ctgaggttaa
      781 atctcatgat tcgattttac atcatttgat agaagatatt gctatttgta taggtcaggg
      841 attggataag gcattaggta atagagccag aattacgaga tttggatatg caattgttcc
      901 catggatgat tcgagaagca attcagcaat tgatctggtt aagagacaat tctctaaatt
      961 tgaattaaag ttagaaagga atgaagtgga aggcattgtg aaggaggata ttgaacactt
     1021 ttttagatct ttactgcaaa atcttgttgc ctgtacccac atactggtag aatatggaga
     1081 agatgatcat cataaattag agtctgccat gaagagcttt gctattgcgt ttagaaatgc
     1141 tgcagcaatt gaccaaagga gaaaaggatt gcctagtact aaagacatga tgtaaatgac
     1201 aaagatagct atttttgatt ttggagcagg taatctattt aatttgcacc aatccctcct
     1261 tagaaatggt gctcataccg tggatatcat aaggactcta aatgaattgg aaaattatga
     1321 tggactggtg ttaccaggag ttggtaattt tgatagcgct attagttcta tacaaaaaga
     1381 ttcaatagca ctaaatgccg cagtagaaag tggaatacca atactcggca tttgccttgg
     1441 tcttgaaatg ttatttaaca aaagcgaaga gggaattctt gatgggctta aagtattgga
     1501 tggcgatgtt ttgatgcttc cgaaaacaaa agtcaaagtt cctcacatag gttggaataa
     1561 tttaagaatt gttaaaacag aatgtaactt gctgaaaggg attccgcaag attcttgggt
     1621 atattttgtt cattcgtatc atatcgagcc ccaagatgaa aatctaattg cggcaataac
     1681 tgactatggt tcgaaattgc ctgttgtaat agaacgatca aatctttttg gtacccaatt
     1741 ccaccctgaa aaatcgggaa aaattggagc ccaaattatg aaaaattttg tcaatatctg
     1801 tgaaaaaagc gaatgaaggt actagcggca atagacataa tgaacgggga tgtagttagg
     1861 ttaacgaaag gagaccaatc aaccaaaaaa gtatatagca atgatcccgt tcaggttgca
     1921 aaaaaatggg caaaggacgg agcagacatg ttacatatag ttgatcttga tgctgcattt
     1981 ggtaatgaaa gtagtaatct ttcaataatc tcagaaatat tgcactctgt gaatattcca
     2041 attcagattg gaggcggtat tcgcaatact gaaatttttg aaaagattgc taaaatggga
     2101 ttttcaaaaa ttgtggttgg tactatggcc tatcgcaatg taaatgaatt gtgtttactc
     2161 agtaaaaatt atggtgacaa gattgtcatt tcacttgacg agataaatgg aaaggtaatg
     2221 atcgaaggtt ggaaatcctc gtcggattac aaagttgagg atgcgataaa caagttcaat
     2281 aagcttggaa taagcaattt cctcctgacc agtattatta aagatggaac tctttcaggc
     2341 ccagacattg tcactttaaa tagcgttaat acagatcgaa aatcaaagat aatagctagt
     2401 ggaggaattt caagtttggt agatgtgtta agggttagat caattggatg cgatagtgtt
     2461 attcttggta aggcattgta tgaagaaaga ttggatataa aaaaggtgaa agcaatagca
     2521 taatgccatt atcaaagaga atcatcccat gtcttgatgt cgataatgga agagtggtta
     2581 aaggaatcaa atttcgagga gtaaaggatg cgggagaccc agttgaatta gctaaaaaat
     2641 acagcgacca aggagctgat gaacttgtct tccttgacat tacagcttca aaacaggacc
     2701 gtgaaataat gaagagtatg gttagaaaag tagccagggt gatagacata ccattcacgg
     2761 tgggaggtgg aattaaaacg ctttcagatg cacgagagat tctgcttaat ggagcagaca
     2821 aagtttccat taatactgct acggtcaaaa accctgaatt ggtaacagat ctcatgaaaa
     2881 tttttgggag acaatgcgtt gtagttgcga ttgatgtcaa gagaaattat gatgttggcg
     2941 aaaaacatac agtaatgcat ggacctgaca aggattttta ttttga
//
LOCUS       DASUMD010000224         4708 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_749425, whole genome shotgun sequence.
ACCESSION   DASUMD010000224 DASUMD010000000
VERSION     DASUMD010000224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4708)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4708)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4708
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_749425"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(112..348)
                     /locus_tag="VFX26_06085"
     CDS             complement(112..348)
                     /locus_tag="VFX26_06085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574082.1"
                     /translation="MKTTNAKQKVKVKIHRTSDYDDKYTGIRDFPNEKAMLHYGLSKV
                     HKVIIRKYTKDDEFIVAAQKTRGLKFDYDMELSD"
     gene            complement(634..918)
                     /locus_tag="VFX26_06090"
     CDS             complement(634..918)
                     /locus_tag="VFX26_06090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574083.1"
                     /translation="MYNSFYGNNPRGISHRPIPIVRPVNRSQEQLKEFRDFLSNPRIS
                     QNSKKRFMVEKGGGYCSMCGDIATQIASYDMIDATLVEKYCDTCLARGIN"
     gene            1265..1534
                     /locus_tag="VFX26_06095"
     CDS             1265..1534
                     /locus_tag="VFX26_06095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574084.1"
                     /translation="MSNDLNELIARKDKLEGELNHELSADYNELMKKLSESFRDMHEN
                     SVQYYKQKANDELDKMEKNIQSGNKLSAINEKLLADTYLSFATTI"
     gene            complement(1775..3133)
                     /locus_tag="VFX26_06100"
     CDS             complement(1775..3133)
                     /locus_tag="VFX26_06100"
                     /inference="COORDINATES: protein motif:HMM:NF024808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEX5574085.1"
                     /translation="MNFNLVQQCGSNGKQSAVPIIIVLILLLGLSILAVSNLFVLSYA
                     QKQQQVNLTGLFVDPEDRWKMLIPSALNELRMRHPNLNIQINYTVYPYNDARTEMLKS
                     MANGTAVDLISLDQIWLGEFANKSYIVDLTNSTKSWGGLSDWYQANLDGNLYDSKIYG
                     IWAWTDIRSIWYWKDLLNQSGVDPNSLKTWDGYIQSAKKLNSALEQRNISGIELVGGP
                     GSQNEWYPFLWMLGGEIITQKSGHPSKGVYWFPTYNSTNGVKALEFFKQLIDANVNPI
                     TINFEKEFADKNYAEMLGGSWLPGYFPNLTKQDIEDRIGMIPMFPVPTEGTDTASIMG
                     GWLLSIPQTSIHKDLAWELITIMLKPEILSPVLAKLGYLPTQVAIGEGPYSTPLRNSI
                     PYYDELINLIFYGHARPNIPEYPLIADHVRQAIDAVYNGTKTPKEALDDAAEKSAKSL
                     GW"
     gene            3572..4126
                     /locus_tag="VFX26_06105"
     CDS             3572..4126
                     /locus_tag="VFX26_06105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574086.1"
                     /translation="MLESPKNFPNECLEDYYLMVIAFRETYNSVDIKYEKSNQCGLIL
                     TLALSIFIMLTSVTESFSQKSGSIDISVVNSSFIPLTNIDANQVKANIEYSLEDEKVQ
                     NQLVNAVMEVYAPNGTLIKTTSIGSGFTLQSDGGEQVLRTTLHDKSLQSLSIKIVLTD
                     LSKKTPLSNEITDDLKLKEASTTD"
     gene            complement(4226..>4708)
                     /locus_tag="VFX26_06110"
     CDS             complement(4226..>4708)
                     /locus_tag="VFX26_06110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574087.1"
                     /translation="EAVSPEPTQQQSNISEAVSPEPTQQQSNISEAVSPEPTQQRLLV
                     TISPLKNPLARGDRQNTTITVMDSSNRPIANAQIDGKLIYPGDDFEKEFKGITDLEGK
                     FVYSWTVGKKGDVGPLDIEAEVSSQGYPSVVAHSSFEILESGESSNSEDPFQSQFQSP
                     "
BASE COUNT         1353 a          900 c          826 g         1629 t
ORIGIN      
        1 tcttaatctt aaaatgaatt agtaagcttt aaagttttcg aatcgtctag ggttcatcgg
       61 gattcgaacc ctgcatgtac tagggttcta ctacctagta tttagctttt cctagtcgga
      121 tagttccata tcgtaatcaa actttaggcc cctggttttt tgtgctgcta caataaattc
      181 atcatcctta gtatattttc ttattatgac tttatgcacc ttagataatc cataatgtaa
      241 cattgctttt tcgttgggaa aatcccttat gcccgtgtat ttgtcgtcat aatcgctagt
      301 tctatgtatc tttactttta ctttttgttt agcatttgtc gttttcattt tttattcgtc
      361 ttatttatta ttacgtgctc tttacttatg acctttttga ctctttacct tatcattatg
      421 tcttttaact attgccttta ccttatctgg attccttctg ctccaatctc caacatattg
      481 tctatgatgt ttctttattt ggggacgttg cctctattct cttaagtatt gttttctacc
      541 tttatttttg tcttttttag acaaaactac agctatcatt tcatctaatc tggaagtact
      601 cagtaatttg acctttttca ggtcggcatt aacctaatta attcccctag ctagacaagt
      661 gtcacaatac ttttccacaa gcgtagcatc aatcatatca taacttgcta tttgagtagc
      721 tatgtcccca cacatagaac aataaccgcc tcctttctca accataaacc ttttttttga
      781 attttgagat attctagggt ttgagagaaa atctctaaac tctttgagtt gctcttggga
      841 tctattcact ggtcgcacaa ttgggattgg tctatgacta ataccacgag gattatttcc
      901 gtaaaaagag ttatacatgt atataataca cgctaatcgt atatctatct atgtgtttag
      961 tgtcacagac atttatttgg ccctaatgta gatttctaat atttggaaac aaaaaaataa
     1021 ttctctatgt accaatataa agagtatttt tctttggaaa catacagaac taatagctag
     1081 ttcattttgc tgaataactg gcccagtgag cgtagttttt tccttcttta tttttgttaa
     1141 ttaggttaag ttttctagta aatagcaaca tggcaccttt tactatgtgt tggaaaaaga
     1201 tattgattca aataatcttg ttggttagag acatgtttat atgttacgaa atcatagtaa
     1261 ttatatgtcg aatgatctaa atgagttaat tgcaaggaaa gataagctag agggagaact
     1321 caatcatgaa ttatcagctg attataatga gttgatgaaa aagttgagtg aaagttttcg
     1381 cgatatgcat gagaattcag tgcaatacta taagcaaaag gcaaatgatg agctggataa
     1441 aatggaaaaa aacatacaat caggtaataa attgagtgct attaacgaaa agctattggc
     1501 agacacatac ttatccttcg ctacaaccat ttaatttttt tatcgatcat acaattattt
     1561 cctttaagac taacttatta tcaaaatcct tattatcaaa tgtttgttaa attttgattt
     1621 acatcgaacc gtcggtaccc acgacgctat cggttctaaa aatggattct taaatataaa
     1681 atggattggt aagctttaaa gttttcttca aaacattcca ctgaatacct cttctagtgg
     1741 attaatctca aaaataccct tcatgttatt atctttacca tcctaaagat tttgcagatt
     1801 tttcagcagc gtcatccaag gcttctttag gtgtcttcgt accgttatac acggcatcaa
     1861 ttgcctgccg tacgtgatct gctatcagtg ggtattctgg tatgttcggt ctagcatggc
     1921 catagaagat caaattaatc aactcgtcat aataaggaat agaatttcgc agaggcgtcg
     1981 aatatgggcc ctcacctatt gctacctgtg tgggcaggta acccaatttt gctaatacag
     2041 gcgataatat ttctggtttt agcattatgg tgattaactc ccatgccaga tctttgtgta
     2101 ttgacgtctg aggaatgctc aataaccagc ctcccataat acttgctgta tccgttcctt
     2161 cggttggtac tggaaacatg ggaatcattc ctatcctatc ttctatatct tgcttagtta
     2221 aattgggaaa atatcctggt agccatgaac cacccagcat ttctgcataa ttcttgtcag
     2281 caaattcttt ttcgaaattg atggttatgg gatttacatt cgcatcaatt aattgtttga
     2341 aaaattcaag agccttaacg ccattcgtgc tgttataggt cggaaaccag taaactccct
     2401 tcgagggatg tccagacttt tgtgtaatta tctcgcctcc tagcatccac agaaaagggt
     2461 accactcgtt ttgagatcct gggccaccaa caagttcaat tccacttata tttcgttgtt
     2521 ctaatgcact attcaacttt tttgcagatt gaatgtagcc atcccacgtc tttaatgagt
     2581 taggatcgac acccgattga ttcaacagat ccttccaata ccatatcgat ctaatatctg
     2641 tccaggccca aataccgtat attttgctat catacaagtt accatctaag tttgcttgat
     2701 accaatcaga gaggccgccc caactcttgg tactatttgt gagatcaaca atgtacgatt
     2761 tgttagcaaa ttctcctagc caaatttgat ctagtgatat tagatcaacc gcggttccat
     2821 ttgccatgga tttcagcatt tcagttctag cgtcattata tgggtaaaca gtatagttta
     2881 tctgaatgtt aagatttgga tgcctcattc taagttcgtt caaagcagac gggattaaca
     2941 ttttccatct gtcttctgga tcaacaaaga gtccagtaag atttacctgc tgctgttttt
     3001 gggcataaga aagcacgaac aaattactta ccgctaatat actaaggccc aacaataaaa
     3061 taagaacaat aattattggt actgcactct gcttaccgtt tgaaccacac tgttgaacta
     3121 gattgaagtt caaggatcag atcggattat agcaattgct gtcgcttatg tagttttccc
     3181 tttttaatta ttttctgttg cttcaaaact gctttttagc atatccttga atcgggaagt
     3241 aaacaatcag gttcaggctt aactgtgaaa aatcggattt aatttagatc ctgaaatttt
     3301 atttgtttct taatggaaat actattaccg taagcggata ctaggtctgg aggattcggg
     3361 gattagtcca tgttctaatc tcgcctcgct tatcaatatc cgctgatggt taagaacaga
     3421 tttgttttca tatatgttag tccgtcggga tttgaaccct gcatgtacta gggttctact
     3481 aacttggtat ttagcttttt cttttagtct gattcttgtc ctctagtgat tgtttcttgt
     3541 tcattattgt aagtcctaaa gtaattaatc aatgcttgaa agtccgaaaa attttccaaa
     3601 tgaatgtcta gaagattact atttaatggt tatagccttt agagaaacct acaattcagt
     3661 ggatataaaa tacgagaaat ccaatcagtg tggacttatc ctaacattgg ctctttcgat
     3721 atttattatg cttactagcg tcacagaatc tttctcacaa aaaagtgggt cgatagatat
     3781 ttcggttgta aattcgagct ttattcctct tacaaatatt gatgcgaacc aagttaaagc
     3841 taacatagaa tattctcttg aagatgaaaa agtacaaaat caactagtaa acgcagtaat
     3901 ggaggtgtat gctcccaacg gaacactcat taaaactact tcaattggga gtgggtttac
     3961 tcttcaaagt gatggcggcg aacaggtgct aagaactacc cttcatgaca agtctttgca
     4021 aagcctgtcg ataaaaatcg tactcaccga tttgagcaaa aaaactcctt tatcaaatga
     4081 gattactgac gacctgaaat tgaaagaggc ttcgacaacc gattgagaat tgtattgtag
     4141 cttcttgtcc tgaacatcgg gataaaatat gtttacccag gcaccaggcc taggtgtaga
     4201 cgtttgaggt ttgtggcaca gcatatcaag gactttggaa ctggctttgg aatgggtctt
     4261 ctgaattaga cgattcgcct gattctagta tttcaaacga gctatgcgct actacagatg
     4321 ggtatccttg gctcgacact tctgcttcta tatcaagagg gccaacatca cctttcttgc
     4381 ccactgtcca ggaataaaca aatttcccct ccaaatcagt aattccttta aattcctttt
     4441 cgaaatcatc tcccggataa atgagttttc cgtcaatttg cgcatttgct attggtctgt
     4501 tacttgaatc cataactgtt attgtggtat tttgtctgtc tccccttgcc aatggatttt
     4561 ttaacggcga aattgtaacg agcaaccttt gctgtgtagg ctcaggagac acagcctcag
     4621 atatattgga ttgttgctga gtaggctcag gagacacagc ctcagatata ttggattgtt
     4681 gctgagtagg ctcaggagac acagcctc
//
LOCUS       DASUMD010000225         3018 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_416855, whole genome shotgun sequence.
ACCESSION   DASUMD010000225 DASUMD010000000
VERSION     DASUMD010000225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3018)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3018)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3018
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_416855"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(424..822)
                     /locus_tag="VFX26_06115"
     CDS             complement(424..822)
                     /locus_tag="VFX26_06115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574088.1"
                     /translation="MLGIVCHPINKSTGRIARLCKYECDIIVWRDDSKSLFIEENGGA
                     IHTQEKCKTIKESKPRQEITLTAVHSKLESLSIIVNLERLMAQRSKLQIDRYLDKTLL
                     MIMDTELTILAILWFTVGSHCRSLPFDSNS"
     gene            919..1086
                     /locus_tag="VFX26_06120"
     CDS             919..1086
                     /locus_tag="VFX26_06120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HEX5574089.1"
                     /translation="MGESTVATKASSKFASLRTTIPMSIVRQWKLKVGDKLEWEWKVI
                     EGQMALVVSKV"
     gene            1894..2298
                     /locus_tag="VFX26_06125"
     CDS             1894..2298
                     /locus_tag="VFX26_06125"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX5574090.1"
                     /translation="MSTDNRMISIVDDDPDITLLFHEVLKPILGISIFTFTDPVLALE
                     HFQVNKYAYVMVISDYRMPGLNGMEFLKKIKDLNPLVRTILMTAFEIDDKLFRDYTKK
                     KIINASLQKPIGIHDLIKEVKAELESYEKQKK"
     gene            complement(2547..>3018)
                     /locus_tag="VFX26_06130"
     CDS             complement(2547..>3018)
                     /locus_tag="VFX26_06130"
                     /inference="COORDINATES: protein motif:HMM:NF012402.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX5574091.1"
                     /translation="SVKVRGPEGKFTLHEDHSKPAIFLSGGIGVTPFRSMIKYATDRN
                     LPIKIIMFDSNRNLQNILFRKDFDKCAGTNKNLKIIYTITEEENKTQGNTWKGEKGRI
                     DVVMLKRYLNSDDMEKSIFYICGPPAMVKSMQDILGANLQIPTERIKVEEFTGY"
BASE COUNT          943 a          548 c          525 g         1002 t
ORIGIN      
        1 aacgggtacc gtgtaaaacc ccattcgttt ttaagcatat gcaaatcact gtaacaaatt
       61 ccgcaatact ctacatcgat ctctacttca tcgggtttca gtgaacccaa ttcatactca
      121 aatgtttcta gttttccgtt aggttcatga gcagcatatg cttgaacttt catgacgata
      181 tagtatctgt gcgtgtataa ataagtaatt gtacaactgc ttccctgaga cactaatgcc
      241 tgacaagcta ctaaagctga tgacgagcgg ttctctttga atgataggaa aaacgaatag
      301 gaaccactac tgagtatcca tattacggaa gcaataatcg gttcaaattt gacactgcta
      361 atcgaaatat ttgataactt ccatacttca taaataatct aacgaatcaa tattcctaca
      421 atgctaagag ttactatcaa atggtaatga cctgcaatga ctacctactg taaaccaaag
      481 tattgctaat attgttaatt cggtatccat aatcattaat aaagtcttat ccaagtaacg
      541 atcaatctgt aacttgcttc tttgcgccat taacctctcc aggtttacaa ttatgctgag
      601 ggattccagt tttgagtgca ctgctgttaa agttatttct tgccttggct tactttcctt
      661 tatcgtttta cacttttctt gtgtatgaat tgcgccacca ttttcttcaa tgaaaagaga
      721 tttggaatca tcccgccaaa ctatgatgtc acattcatac ttacaaagtc gggctattct
      781 tcccgttgac ttgtttatag ggtgacatac tatacctagc actacgcacc tattagaaaa
      841 tatataggta gagttactga ccaagtacta ggtagagttc taagaaagca taaacttagg
      901 tatagtatta tatcaagaat gggagagagt acggttgcaa ctaaggcatc ttcgaaattt
      961 gcctcattac gaaccacgat accgatgagt attgtgagac aatggaaact aaaagttggt
     1021 gataaactcg aatgggaatg gaaagttatc gaaggacaaa tggcacttgt cgttagtaaa
     1081 gtttgatgaa aaatttttaa attgttatca tctatcagaa tgatttttat atcgttgttt
     1141 tgcatggtaa acctctacat tcgaaatgta gagcgtctgg tggagccgtc catctcaccc
     1201 gataaatggc ccaccggcgt tattataaaa tgagttaatc ttactttcgt atgctgaaag
     1261 atcatttaaa ctttattgtg atatctgtta gttagacatt ctaaattttg ggcactcgca
     1321 tttattacat ttcgtggggt tattcttggg taactttcga gcatgatgtg atcttatgtg
     1381 tccacatatg caccgatcat tttgactcaa agacactttg ttgagggtta cgagttatta
     1441 aaaattccga tggcttgtca gtaaacttag gtaagccaag ttcatataat ttaaattgat
     1501 atttttcatt actccctaaa caaattgaga cactgggccg gtgggaactc cacttacctt
     1561 caatcccacc ggttcgttaa attattttat attttgttgc ctaaaatcaa tcattgtctg
     1621 accaattgga taatgtctga ccaatcaaac tggtgagact cgcagaattt gacaatttag
     1681 tcccagaagg tgccattaaa tcgctttata atttgttggc aatattatca cgagcgtact
     1741 gaatgatacc atcatacgtt cgctggcggg attattttcg tccgttatcg cgtacggctc
     1801 tagttccgcc ggtaaaacaa ataaaattta tttagtttta ggccgaattc tagcaggtgg
     1861 tgtttagcac ggtacgggag ggtagccagc ctcatgtcta ctgacaatag gatgataagt
     1921 atagtagatg atgatccaga cattacctta ctttttcatg aggtcttgaa gcctatcttg
     1981 ggaatatcta tttttacttt tacagatcct gttttagcac tagaacattt tcaagttaat
     2041 aagtatgcct atgttatggt aatatccgat tataggatgc ctggtctgaa cggcatggaa
     2101 tttttaaaaa agataaagga tctgaatccc cttgtaagaa cgatattaat gactgcattt
     2161 gagatagatg acaagctatt tcgggattat acaaaaaaga aaattatcaa cgcttctctt
     2221 caaaagccaa tagggataca cgatctaatt aaagaagtaa aagctgaatt ggaatcttat
     2281 gaaaagcaaa aaaaataata cctactgagc ggaattgcat aagtactgtt ttaatatact
     2341 gactgacttt agctattctg tataaaactg acatactcta acacaataaa gggaagaact
     2401 tgcttaaagc tcaaccttaa taatctaagt ttttgatgac aaagaatgaa tcaaatcttg
     2461 atcagtgtct actaatttga tcataatatt aatcaattaa tacttccaat tccaaataga
     2521 tagaggcaag ccaaatagca attagttcaa tagcctgtaa actcttcgac ttttattctc
     2581 tcagttggaa tctgaaggtt tgctccgagt atatcctgca tagattttac cattgctgga
     2641 ggaccacaga tatagaatat acttttctcc atatcatcag aattaagata ccttttcaac
     2701 atgactacat ctattcttcc tttttcgcct ttccaagtat tgccttgggt tttattttct
     2761 tcctcagtaa ttgtataaat gatttttaga tttttatttg tacctgcgca tttgtcaaaa
     2821 tccttcctaa acaatatatt ttgtaaattt ctgtttgaat caaacatgat aattttaatc
     2881 ggtaaattcc tatctgtggc atattttatc atgctcctaa aaggagtaac acctatgcct
     2941 ccagaaagaa atatggcagg ttttgaatga tcttcgtgaa gagtaaattt gccttctggt
     3001 ccacgcactt taactgat
//
LOCUS       DASUMD010000226         5261 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_195816, whole genome shotgun sequence.
ACCESSION   DASUMD010000226 DASUMD010000000
VERSION     DASUMD010000226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5261)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5261)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5261
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_195816"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            484..672
                     /locus_tag="VFX26_06135"
     CDS             484..672
                     /locus_tag="VFX26_06135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574092.1"
                     /translation="MATYILLESCSSLVKASANEFNQIPDFNFVAAGNWGCDCKPQST
                     VNKIRNRLDMLRVAKCRN"
     gene            complement(705..793)
                     /locus_tag="VFX26_06140"
     tRNA            complement(join(705..748,763..793))
                     /locus_tag="VFX26_06140"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(742..744),aa:Arg,seq:ccg)
     gene            940..1647
                     /locus_tag="VFX26_06145"
     CDS             940..1647
                     /locus_tag="VFX26_06145"
                     /EC_number="3.1.3.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008967 - phosphoglycolate phosphatase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycolate phosphatase"
                     /protein_id="HEX5574093.1"
                     /translation="MSSNELSIKAFAIDIDGTLTENGSGMIHLPAVSKMRFLEKIGYR
                     VFFVTGRSSIEAYILSVFLGMTRIAIGENGGVVSKGPSDHTILGNKELCLKGYEVLKQ
                     SLSNVDTKPVFPRLSEVVLQRTFDIEEGKKILKERDLELDIVDSKYAFHINELGVNKA
                     KGLNLALKLLNIEPKEVVAIGDSETDIPVFGICGLSIALGHSDDEVKVHANHVVNGKE
                     GVGLCDAIDYVTLNYLR"
     gene            1651..3564
                     /gene="argS"
                     /locus_tag="VFX26_06150"
     CDS             1651..3564
                     /gene="argS"
                     /locus_tag="VFX26_06150"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HEX5574094.1"
                     /translation="MSFKKFISESNEVIKYALGKLNIKNESYSLTEPAKDEFGDLSCN
                     VAFLLTKELQKSPYAIASMLVEEYPQFRNGKNPESQSYVSSVVAHESGYINFKANFTL
                     IGKEIIADILKNDYHYLDIGKNKKVIIEHTSVNPNKALHVGHLRNLAIGDTLYRILKN
                     TNHDVTVLNYVDDSGLQVADILVGFLYLEFPIKPANSNIKFDTYCGNEIYVKVNELYE
                     KDPSLIEKRKSLVKKLEEGDSEITSFASEITTKVLKDQLKTCWRMKARYDLLNFESHI
                     ISSKLWEKTFEKMRNENIIIKETEGANIGCWVFDSNDEGSKIIVRSDGTATYIAKDIP
                     YALLKVGTIEDPFIYQVFMKQWDDTTLWISTTDELKDTTQPFFFPAEDSITVIDNRQT
                     RLQKIIKEILNKFESKSNRYMHLAYGPVLLSSRTAKTLGINPDNVKSVQMSGRKGIYV
                     DADFVLDTLYGKAKEETMKRNPEITGKDLERTSEEIAISAMRYSLIKNDLEKEIKFDM
                     IDSLSLDGNSGPYLQYAYARCCRLIEKSNAKSFSDDVSHLSDRIEFRLIKHLSKYAIV
                     IEDATKNMEPKLIAQYAYELATLFNLFYEKLPILKEIDADISDARISLVEAIRKMLEI
                     NISLVGITPLERM"
     gene            complement(3608..3877)
                     /gene="purS"
                     /locus_tag="VFX26_06155"
     CDS             complement(3608..3877)
                     /gene="purS"
                     /locus_tag="VFX26_06155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HEX5574095.1"
                     /translation="MGKYLVVVTIENKDQVGDPEGETIKKDLIFRSGYSNVESVRSAK
                     CYNIIINTKSEADAKKEVTKLCEELRIYNPIVSNCTIGPISKLNN"
     gene            4196..>5261
                     /locus_tag="VFX26_06160"
     CDS             4196..>5261
                     /locus_tag="VFX26_06160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEX5574096.1"
                     /translation="MVVEIGPILQDFTIIMVVASIMAMISYKLKQPMVIGYIIAGMII
                     GPYTPPFSLILNFDILNLFAEIGVILLLFVVGMEFPIEKLKKIGKKALVIAFSEGLGT
                     FAIGYLVCQALNYSVSDSLFLALAISVTSTVIVMRILEELDMIKEEATIIILGVAVIE
                     DIIIISMLAIMQSVSTTGELSGIELITSVGTVLAFIGGALFIGSKTIPKLVNLIGKTN
                     QHDVIVVAILGVAFGLSYIAFEIGISVATGAFFAGVLIAESKVHAVTQVLTTPLKDMF
                     GALFFVSVGALMDITKLPIFIVPAIILILVSIGAKFFTVYLASRSQGYNTQTALRTAF
                     GLSSSGGELALVVAKGGNDVG"
BASE COUNT         1740 a          819 c         1042 g         1660 t
ORIGIN      
        1 tgatcataac aaaagtcctc gtctgaccac gcaacattga atgaattagc atatattatc
       61 gctgacagta tcgaaatcgt taccaagtat gcaataaggt ttgtatccat ggttatgaat
      121 ttgcacttta aatattaaaa atctattgat agaaatattc cattgttttt tagtaattgc
      181 gttacattct ctaaagacaa agggccaaat acaaaggaat ccatacgttc cagaaactta
      241 atatgtagtt gttttttggt atgcaatgtt taaggaccca acatttattt tcagtacatg
      301 attctcattt tgaggaaacg aagtattatt taagtaagtg taggtgaacc tgaagaaata
      361 gaaaattgaa cactacattt acaatcattg gtaaatattt tctaatattg cacaaaaata
      421 taaggtagtg atatctgctt gggtaaagat ttctttaata ttgtttgaac tttatcattt
      481 ttgttggcga catacatctt attagaatct tgctcttcat tggtgaaagc atcagcaaat
      541 gagtttaacc aaattcctga ttttaatttt gttgcggcag gtaattgggg atgtgactgt
      601 aaaccccaaa gtacagttaa taaaattaga aacagactag acatgttgag agtagctaaa
      661 tgtaggaatt agatagtttc tacagatcgt aatttttctg aatacgggtc cgatgggctt
      721 cgatcccatg aactctggct ccggaggctt atgcttgaaa atcagcaccc tgtcctgact
      781 gggccacgga cccattgact attgatacgt tgaaatattt aatcataaat ggaatcctgc
      841 aggataactg tgctaatcgt attccaaagt gtgtaatatt atgttctttt agaaaagtta
      901 atgatacgca ggactcaaca gaataattta ggatagcctt tgtcgagcaa tgaactgagc
      961 attaaggcgt ttgcaattga tattgatggc actctaaccg aaaacggtag cggaatgatc
     1021 cacttgcctg ctgtttcgaa aatgaggttt ctcgaaaaga ttgggtatag ggtattcttt
     1081 gttacaggtc gatcctcaat agaggcttac attttgtcag tgtttttggg tatgacgagg
     1141 atagctatcg gagagaatgg tggagttgtt tccaaaggac cttcagatca tacaattctt
     1201 ggaaataagg aattgtgctt gaagggatat gaagtattaa aacaaagctt atctaatgta
     1261 gatactaaac cagtatttcc tagattgtca gaagttgtat tgcaaaggac ctttgatatt
     1321 gaggagggca aaaagatact aaaggagagg gatttggaac tagatatagt agacagcaaa
     1381 tacgcatttc atatcaacga actaggtgtg aataaggcca aaggtctaaa ccttgcacta
     1441 aagttgctaa atatcgaacc aaaagaagtt gtggcaattg gcgacagtga aactgacatt
     1501 cctgtttttg gtatctgtgg attgagtatt gctttaggtc attctgatga cgaagttaaa
     1561 gttcatgcaa atcatgtcgt aaatggtaag gaaggagtgg gattgtgtga tgctatcgac
     1621 tatgtcactt taaattattt aagataagaa atgagtttta agaaatttat cagcgaatcc
     1681 aatgaagtaa taaaatacgc acttggaaaa ctaaacatca agaatgaatc ctatagtctg
     1741 actgaaccgg caaaagacga gtttggtgat ctaagctgca acgttgcatt cttgctgaca
     1801 aaggaattac aaaaatcacc ctatgcaatt gcttcaatgt tggttgaaga atatcctcaa
     1861 tttcgtaatg gtaaaaatcc agaatcacaa tcgtacgtat catctgtagt tgcgcatgag
     1921 agtggatata ttaattttaa ggcaaacttt actttaattg gtaaggaaat aatagctgat
     1981 atattaaaaa atgattatca ctatcttgat ataggtaaaa ataagaaagt gattatagag
     2041 cacaccagtg ttaaccccaa taaagcactg cacgtgggcc acctcagaaa cttggcaata
     2101 ggcgataccc tgtatagaat actaaagaat acaaatcatg atgtcacggt attaaactac
     2161 gtggatgatt ctggacttca agtcgctgat attctggttg gatttttata cctagaattt
     2221 ccaataaagc cagctaacag taatatcaag tttgatacat attgtgggaa cgagatttat
     2281 gtaaaggtaa atgagttgta tgaaaaggat ccttcgttga ttgaaaaaag aaaatcattg
     2341 gtaaagaagt tagaagaagg ggattctgaa ataacctcat ttgcatctga aattacaact
     2401 aaagtactca aagaccagct caaaacatgc tggagaatga aggctcgata cgatttactg
     2461 aattttgaat cgcatataat aagttcaaaa ttatgggaaa agacgtttga aaaaatgaga
     2521 aatgaaaata ttataatcaa ggaaactgaa ggtgcaaata ttggatgttg ggtttttgat
     2581 tctaatgatg agggaagcaa gattatcgtg aggagtgatg gtactgcaac ttatatcgca
     2641 aaagatatcc cttatgcatt actaaaggtt ggaacaattg aggatccatt catatatcaa
     2701 gttttcatga aacaatggga tgatactact ttatggatta gtacaactga cgaattgaag
     2761 gatacgactc aaccattttt ctttcccgca gaagattcga taactgtgat tgataaccgg
     2821 caaacaagat tacaaaaaat aattaaggaa atcttgaata aatttgaatc aaaatcaaat
     2881 aggtatatgc atttggctta cggtccagtt ttactttcaa gtagaactgc aaagactctg
     2941 ggcataaatc ccgataatgt aaagtcggta caaatgtctg gacgaaaggg catatatgtg
     3001 gacgcggact ttgtgcttga tactctgtat gggaaagcta aggaagaaac aatgaagcga
     3061 aatccggaga ttactggaaa agatcttgaa agaacatcgg aagaaatagc aatatctgcc
     3121 atgaggtata gtctaattaa gaatgattta gaaaaagaaa ttaaatttga tatgattgat
     3181 tcattaagtc tggatggcaa ttctggccca tatttgcaat atgcatatgc aagatgttgt
     3241 cgcttgatag agaaatcaaa tgctaaatca ttttctgatg atgtatctca tctttcagat
     3301 agaattgaat ttcgtctcat aaagcatctt tcaaaatatg caatagttat tgaggatgct
     3361 actaaaaata tggaaccaaa gctcattgcg cagtacgcct atgaactagc aacactgttc
     3421 aacttatttt acgaaaaact acccatattg aaagagattg atgctgatat atctgacgca
     3481 agaatttctt tagttgaagc gatacgaaaa atgctcgaaa tcaatatttc cttagtcggt
     3541 attactcctc tcgagagaat gtagctcgat tcattagctt atgggatgtg agagatcgta
     3601 atttaattta gttgttgagc ttgctaattg gtccaattgt acaattgctt acaatgggat
     3661 tatatattct gagttcttcg cacaattttg ttacctcctt ttttgcgtct gcttctgatt
     3721 ttgtattaat gattatatta tagcatttgg cagatctgac ggattcaaca tttgagtatc
     3781 cacttctaaa aatgaggtcc ttcttaattg tttctccttc tgggtcccca acttgatctt
     3841 tgttttctat cgtgacaaca acgagatact ttcccatacc aattttctag gttatatttg
     3901 tcaaagtatt ggaataaatt tcttgttgtc actacgcaat atttagcaat cttctaactt
     3961 aggtggataa atcaaacata ctggcatcac tttttctcca tattttttgc atctgaatta
     4021 cgtattatcg atcgccaaca gacttttatt ttgacttgat gaagaggtaa caattagtat
     4081 cgaaacaggt aacacaataa tttctcgtac aatctttgac tgaaatgtct taattattaa
     4141 aaatttcacg acatttataa aaagaagttt aacaacatag tgtaagtgtt agaatatggt
     4201 agttgaaatt ggtccgatct tgcaggattt tacgataatt atggtcgttg cctcaataat
     4261 ggcaatgatt tcatacaaac taaagcaacc aatggtaata ggatatatca tcgcaggtat
     4321 gataatcgga ccttatactc ctccctttag tctaatactc aatttcgata ttctaaattt
     4381 atttgcagag attggagtca ttctactctt gtttgttgta gggatggaat tcccaataga
     4441 aaaattgaaa aaaatcggta aaaaggcact agtcatagcc tttagcgagg gactaggcac
     4501 atttgcgatt ggatatttag tatgtcaagc gttgaattat tctgtttctg atagtctctt
     4561 cttagcacta gcaatttcag taacaagcac agtaattgta atgcgcattt tagaagagct
     4621 tgacatgatt aaagaagaag caacaataat aattctgggt gttgctgtaa tcgaggacat
     4681 tataataata tcaatgctgg ccataatgca atcagtatct actacgggtg aattgtctgg
     4741 tatagagttg atcacatcag ttggcacagt cttggcattt attggcggcg ctttatttat
     4801 aggctcaaag acgattccaa agttggtaaa tcttatcgga aaaaccaatc aacatgatgt
     4861 catagttgtt gcaatccttg gagttgcatt tggactctca tatattgcat ttgagattgg
     4921 aatatctgta gcaaccggag ccttctttgc gggagtgtta attgcagaat caaaagttca
     4981 tgcagttacc caggtgttaa ctactccact taaagacatg tttggtgcgc tgttttttgt
     5041 ctccgttggt gcgctaatgg atattacaaa actaccgatc tttatagtac cagccattat
     5101 actaatctta gtatctatag gcgcaaaatt ctttacggtg tatctagcat caaggtcgca
     5161 aggttataat actcaaacgg ccctaaggac tgcctttggg ctttcctcat caggtggaga
     5221 gctcgcacta gttgttgcta aaggtggaaa tgacgtgggc g
//
LOCUS       DASUMD010000227         2624 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_308967, whole genome shotgun sequence.
ACCESSION   DASUMD010000227 DASUMD010000000
VERSION     DASUMD010000227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2624)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2624)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2624
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_308967"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..491
                     /locus_tag="VFX26_06165"
     CDS             <1..491
                     /locus_tag="VFX26_06165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF47 family protein"
                     /protein_id="HEX5574097.1"
                     /translation="NAGEEVENLRRKMTREISDTGSLMVYREDVLRTAYIIDDIAGYI
                     TGIAFRLSNIKISTLKKGKIDEDINELINMVVEAIFNLNEMARALSIKPSSTIEIAQE
                     VQNIERKVDNSYRKVVIKALNEIPNTKDLLLVKDAVEGIEGMADKCQAASDSLTILAL
                     SM"
     gene            443..1042
                     /gene="endA"
                     /locus_tag="VFX26_06170"
     CDS             443..1042
                     /gene="endA"
                     /locus_tag="VFX26_06170"
                     /EC_number="4.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000214 - tRNA-intron endonuclease
                     complex [Evidence IEA];
                     GO_function: GO:0000213 - tRNA-intron endonuclease
                     activity [Evidence IEA];
                     GO_process: GO:0006388 - tRNA splicing, via
                     endonucleolytic cleavage and ligation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-intron lyase"
                     /protein_id="HEX5574098.1"
                     /translation="MSGRVRFSHNTCSEYVMGSFSGTLVESRIIIWDIHDSRSIFSLG
                     YYGKPLGIYKPKGIDFETPLILDLIEGCYLVESKLLTVNNVNGERIILKEMKEICRKQ
                     YVDFDIKYLVFKKLRDVGYIVSPGIKFGCDFAVYEHGPGIDHAPFLVQVVDNQQDITA
                     TGIVLAGRLATTVKKQFILAITSMKPRRVYFLGFDWWRA"
     gene            complement(1176..1451)
                     /locus_tag="VFX26_06175"
     CDS             complement(1176..1451)
                     /locus_tag="VFX26_06175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574099.1"
                     /translation="MIEPHTADPSTLHEDSKESETIKIVNLNEIFASQMSKRGLIVEA
                     VPIGSLNLEREEYYNNDIASNPRFITNRGCIKVKDKEISMIQIIQRY"
     gene            1618..>2624
                     /locus_tag="VFX26_06180"
     CDS             1618..>2624
                     /locus_tag="VFX26_06180"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX5574100.1"
                     /translation="MDDSKFADKVVVVTGSGTGIGQAIAKRFAENGASIILLGRRKEP
                     LEQTRSELEKIVASTASKGKIRIFPGVDVSDEIAITNMFSTISNELGPIDILVNNAGV
                     SGPVKLFTNSNFAEFKECVMIHLTGTFWTTLKSIENMRKGAKVITISTFFTEENKYEQ
                     RPYRFRTPYTSAQGAKNRLAEAFAWELVPDGIQSVATNPGPVHSDRIYKTVYPKAAAE
                     FLRIGGFPGLSSIEIEKILQQLLNVLGEEQNVIDREMDMVLQDVFSERIKNQDDKTKL
                     TSTLGELLSKTQEIAEKIQLNTKKMIVDKEFLTQDQVAEMVLNLSSEKMSKLLNGRVI
                     P"
BASE COUNT          893 a          427 c          532 g          772 t
ORIGIN      
        1 aaaatgctgg agaagaagta gaaaacctca gaagaaagat gaccagagaa atttcggata
       61 caggaagtct tatggtgtat agagaggatg ttcttagaac tgcctatatt attgatgata
      121 tagccggata catcactggt atagccttta gactctcgaa tatcaaaatt tccacgctaa
      181 aaaaaggcaa aattgatgag gatatcaatg aactcattaa catggtggta gaagcgattt
      241 ttaacctaaa tgaaatggcc cgagctctta gcattaagcc ttcaagtact atcgagattg
      301 cacaagaggt gcaaaatatt gaaagaaagg ttgataattc ctacagaaaa gtagtgatca
      361 aagctttgaa tgaaattcca aatacaaaag accttcttct agtaaaggac gcagtagaag
      421 ggatagaagg aatggcagat aaatgtcagg ccgcgtcaga ttctctcaca atacttgctc
      481 tgagtatgta atgggttctt tttcaggtac actcgtagag agcagaataa tcatatggga
      541 cattcatgat tcgcggtcca tattttctct tggatactat gggaaacctc ttggcatcta
      601 taaaccaaag ggaatcgatt ttgaaacccc tcttattcta gatctcattg aaggatgtta
      661 tttagtagaa tcaaaattac ttacggtaaa taatgtcaac ggagaacgga ttattttaaa
      721 ggaaatgaaa gagatttgca gaaaacaata tgtcgatttt gacattaaat atttggtatt
      781 taaaaaatta agagacgttg ggtatattgt ttctccagga atcaagtttg gctgtgattt
      841 tgctgtatat gagcacggtc caggcattga ccatgcgcca tttctggttc aggttgtaga
      901 taatcaacaa gacattacag ctactggaat agtattggct ggaaggttgg caactacggt
      961 aaagaagcaa tttattttag caataacatc gatgaaacct cgaagagttt acttccttgg
     1021 tttcgattgg tggagagctt gaatctttcc ataagttgac ataccttcta tagctttaca
     1081 taatatgaaa gagctgactg gtagtaagat gttaaattag atttgatctc gaaaaaaatc
     1141 taatgataga atttaatgtg tccggacata gttagttagt atctttggat aatctgaatc
     1201 atgcttattt ccttgtcttt tactttaatg cagccacgat tagtaataaa cctcggattt
     1261 gaggcgatat cattattata atactcttcg cgctccaagt ttaacgaacc aattgggacc
     1321 gcctcaacaa tcaatcctct cttactcatt tgtgaagcaa aaatttcatt tagatttacg
     1381 attttaatag tttctgattc tttcgaatct tcgtgcaagg tactaggatc tgcagtatgc
     1441 ggttcaatca tgcttctttt atttttccac tgataaataa attgtgtgaa aattgttgct
     1501 atgctcttta ttttataaaa ttttcagatt attcggtaac agcttgccaa tcctcgttat
     1561 atttaatagt gtattagata tgccttcaag ttatgcctaa aggggatgga ctcttatttg
     1621 gatgattcta agtttgccga taaagttgta gtagtcacgg gtagcggaac tggaataggc
     1681 caagccatcg ctaagagatt tgctgaaaat ggcgccagca taattttact tggaagaaga
     1741 aaagaacctt tagaacaaac acgctctgaa ttagaaaaga tagttgccag tacagcaagc
     1801 aaaggaaaaa ttaggatatt tccgggagtt gatgtctcgg atgaaatagc aataacgaat
     1861 atgttcagta ctatatccaa tgaattagga cctatcgata ttcttgtaaa taatgccgga
     1921 gtttcgggac cggtaaagct gtttacgaat tcaaattttg ctgaattcaa agaatgtgta
     1981 atgatacatt taacaggtac attttggact accctgaaat caattgagaa catgcgaaaa
     2041 ggtgctaaag ttattaccat atctacattc ttcacagagg aaaacaagta tgaacagcga
     2101 ccttatagat tcagaactcc ttacacaagc gctcaaggtg caaaaaatag gctagctgaa
     2161 gcctttgcat gggaattagt tccggatggg attcaatcag tagctactaa tccgggaccg
     2221 gttcattcgg atcgtatcta caaaactgta tacccaaaag cagctgcaga attcttgcgg
     2281 attggaggct ttcccggact atcatctatc gaaatagaaa aaatattgca acagctattg
     2341 aatgtcttag gagaggaaca gaatgtaata gacagagaaa tggacatggt tctgcaagac
     2401 gtatttagcg aaaggataaa aaatcaagat gataaaacta aacttacctc aacgctcgga
     2461 gagctactgt caaaaactca ggaaatcgct gaaaagatac aacttaatac gaagaaaatg
     2521 atagttgaca aggaatttct tacacaggac caagttgcag aaatggttct aaacctatca
     2581 tctgaaaaaa tgagcaagtt attgaatggt agagttatcc caaa
//
LOCUS       DASUMD010000228         5423 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_87158, whole genome shotgun sequence.
ACCESSION   DASUMD010000228 DASUMD010000000
VERSION     DASUMD010000228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5423)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5423)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5423
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_87158"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..467
                     /locus_tag="VFX26_06185"
     CDS             <1..467
                     /locus_tag="VFX26_06185"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEX5574101.1"
                     /translation="YGGEVVKNTGDGLLFYYCSVGDSPTKADSHAKTVRNCLNSAITL
                     SILHRNVNSKFISELLPELNYRISLDYGEVSFAQTVDSTTLDIFSTTVNLCAKINKVA
                     DPNKVIIGGDLYRIARNLSGYDFHEVKETISISNKAYPLYAVSEAKTIGEYS"
     gene            complement(678..1574)
                     /locus_tag="VFX26_06190"
     CDS             complement(678..1574)
                     /locus_tag="VFX26_06190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574102.1"
                     /translation="MYLILSSAYNFGINESSELEFIVNSLYYTFDVLMLVPALVILLN
                     LKKDPFTFHWIFITVALILLVISDVGYTYFSIISESLLQEFEWLWSIIYALGYLFLGI
                     GIYWFDRIKNTLQDKKINLFLEKDEMDRLKNSSKNELIGDTRSEYSEHIIGHESFVDK
                     LEDFLESSKQIKILFYDRYWLSDENVGVILDKIQQRAIVTQIHVNILLPISEISFKSF
                     VSNTNNRNILVSFFDGTFSSDSLVFIFEEKYVAILDKKPTSEFVDDNTVFYGLITNKD
                     TIVLSHITTFEKIWLLEKAVNM"
     gene            1564..1719
                     /locus_tag="VFX26_06195"
     CDS             1564..1719
                     /locus_tag="VFX26_06195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574103.1"
                     /translation="MRYKGKIDRGETKIIGRGLRPFLFINENRHKNRKYEKNKLASKY
                     GTSATEG"
     gene            complement(2481..2666)
                     /locus_tag="VFX26_06200"
     CDS             complement(2481..2666)
                     /locus_tag="VFX26_06200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574104.1"
                     /translation="MTDNGIYGGDSMGFGCCGVGVDQVRNFLTKEERIALLKEYSDGL
                     EKEVQGIKERIKELEQK"
     gene            2723..3025
                     /locus_tag="VFX26_06205"
     CDS             2723..3025
                     /locus_tag="VFX26_06205"
                     /inference="COORDINATES: protein motif:HMM:NF015513.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEX5574105.1"
                     /translation="MRGLDGECCDMRGLLGFLILFLLSKQAMHGQEIATELAKRRGEK
                     PSPGTIYPALRSLKDLGFLSEEKEGKTITYRLSPKGEKAFEIAKKRFTRTFLGVIT"
     gene            3177..3476
                     /locus_tag="VFX26_06210"
     CDS             3177..3476
                     /locus_tag="VFX26_06210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574106.1"
                     /translation="MITINKDMDSITSILYETLKITPFKRDYDASFGKITIILKRYNL
                     NENPRNLRFRFTLFMQEFFDSVPQDQWNLKDPNFIKQSEEFAIRKFKEWILDQVT"
     gene            complement(3531..3854)
                     /locus_tag="VFX26_06215"
     CDS             complement(3531..3854)
                     /locus_tag="VFX26_06215"
                     /inference="COORDINATES: protein motif:HMM:TIGR00026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase/quinone reductase family protein"
                     /protein_id="HEX5574107.1"
                     /translation="MIESQFLYLTTVGWRTGKQHRIEIWYVNYNGKYYVMSELGKNAH
                     WVRNINHNPRISFRIDGLNYEGRARIIDFLKESQLAEQVSEMMNAKYQWNEGLIVELE
                     PLNFD"
     gene            4037..4288
                     /locus_tag="VFX26_06220"
     CDS             4037..4288
                     /locus_tag="VFX26_06220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574108.1"
                     /translation="MDAYLEEELYDILTYCIQNPQASDFETKKQRVSMIGKELYDDGG
                     NDAMENMFYSIEFRIKDEIGKDAKQYRSWWNSISDDWKY"
     gene            4702..>5423
                     /locus_tag="VFX26_06225"
     CDS             4702..>5423
                     /locus_tag="VFX26_06225"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: protein motif:HMM:TIGR00571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009007 - site-specific
                     DNA-methyltransferase (adenine-specific) activity
                     [Evidence IEA];
                     GO_process: GO:0006306 - DNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Dam family site-specific
                     DNA-(adenine-N6)-methyltransferase"
                     /protein_id="HEX5574109.1"
                     /translation="MRSEARKNCGLIYQTPRCHPFVKWAGGKSQLIPQIIHLMPAKFT
                     RYFEPFLGGGAVFFHIASYNRNAFLSDINTDLINAYKVIRNHVEELIPVLNYHQNEYN
                     KSPKNYYYYLRDSTRVFNKIDTAARFIALNKTCYNGLYRVNKNGLFNVPIGRYKNPII
                     CDADNLRNMSVVLKQSGSNLGVSGYKKILVEKAEKDDFIYLDPPFHPISNTANFTSYT
                     NNGFTLEDQKELAIIFNELTRRG"
BASE COUNT         1917 a          919 c          895 g         1692 t
ORIGIN      
        1 gatacggtgg tgaggttgtt aagaatacag gtgacgggct gctgttctat tattgctcag
       61 ttggtgattc gcccactaaa gctgattcac acgctaaaac tgtcagaaat tgccttaact
      121 ctgcaattac attatcaata ctccatcgta atgttaacag caaatttatt tctgaattgt
      181 tgccagagct aaattatcgc attagcttgg attatgggga agtctctttt gcccaaacgg
      241 tcgactcgac tacgctcgat atattcagta cgacggttaa tctttgtgcc aaaataaaca
      301 aagtggcaga ccccaataag gtcataatcg gtggagattt gtatcgaatt gctaggaatc
      361 taagcggcta tgactttcat gaagtaaagg aaacaatttc aatctcaaac aaagcatacc
      421 ctctctatgc agtctcagag gcaaagacta ttggtgagta ctcgtaggtg attttactct
      481 gaaaaacgaa caaaggagtt cgaagatagc aacgagatat attactatgt tgtcgcatcc
      541 atttttatcg caattgttct ttacggcatc gctgacgcaa tggtaccact aataggtagt
      601 gaactcgatt tcttcgaact taactaaagt gttggaattt agcttgcagg tacaatgatg
      661 gtatgttcat tctatattta catattaacg gccttctcta gtagccatat tttttcaaat
      721 gtagtaatat gtgacaatac tatggtatcc ttgtttgtaa ttagcccata aaatacagta
      781 ttatcatcaa caaattcaga tgttggtttt ttgtccagta tcgcgacata tttttcttca
      841 aagataaata caagcgaatc cgaactaaag gttccatcaa aaaaactgac taaaatgttc
      901 ctgttattag tatttgatac aaaactttta aagctgattt cgctaattgg gagaagaata
      961 ttaacatgta tttgggtaac aattgccctt tgttgtatct tatcaagtat tacgcccaca
     1021 ttttcgtcac ttaaccaata cctgtcatag aataaaattt tgatttgttt tgaactttcg
     1081 agaaaatcct cgagtttatc aacaaagctt tcatgaccaa taatgtgctc agaatattca
     1141 cttcgtgtat caccaattaa ttcattcttt gacgaatttt tcaagcggtc catctcatcc
     1201 ttttctaaaa ataaatttat ctttttatct tgaagtgtat tctttatccg atcaaaccag
     1261 taaattccaa ttcctaagaa taaataacct aatgcataaa tgatggacca taaccattca
     1321 aattcttgta gtagtgattc acttattata gaaaaatagg tataaccaac atcgctaatt
     1381 actagcagaa ttagtgctac tgtaataaat atccaatgaa aagtaaatgg gtcttttttc
     1441 aaatttaaga gtataaccag agcaggaacc agcattaata catcgaaggt ataataaaga
     1501 gaatttacaa taaattcgag ttcagacgat tcattaatac caaaattgta agcagaagat
     1561 aatatgaggt acaagggaaa aatagatagg ggtgaaacta aaataatagg aaggggactg
     1621 aggccttttc tatttattaa tgaaaataga cataaaaata gaaaatacga gaaaaataaa
     1681 cttgctagca agtatggaac gtccgctaca gaaggataag gtatactaat ttgtaaaaaa
     1741 tattgctgat aaaaataaag tgtttcccct ataaagaaac aaaatattcc taaaaataat
     1801 gaactaaatt tgtgtatttc tgacctttct aatttagtat aaaataataa tttcgtcatc
     1861 aatattacag agccacctaa aataactaca ccaggtaaac cattcagctg tgaaaaaata
     1921 tcagaataaa agtatgctac aatataaaaa agcaaaatag atatacagaa cggcattatt
     1981 attgcctgca acgtaaacct agcctgactt ttcattcgag catatatttc atcagataca
     2041 ggtgaatacg gcactatatc atttagtctt actacttgta ttatcaagtt tgcttatcgc
     2101 tagatgactt attatttgat aagtaatttt cttatgtcat tcttatgcta attgaatact
     2161 atcgaacagc tttttgagga agtggcgcta acatgtcaat caaatttgca tcgaatcgtc
     2221 agtcacaatt agagatgaca aacctaaagt tagttgaacg tattttgtaa gcaaagttaa
     2281 gtgtatgaaa ccccaagata gcttatggct tcgaatccca ctccccgcgc tttgaatttt
     2341 gcaaacaaac attggataat gtgtttcttc atgttgttaa agccatttca aacaagcttt
     2401 ttgaagtgga tataaaataa gaaaatagcg tcaatataaa aacgactgaa aatgacaaag
     2461 aaaaatgagg taagaaagga ttacttttgt tccaattcct tgatcctctc ctttattcct
     2521 tgaacttcct tctcaagccc atcactgtat tctttcagca gagcaatcct ttcttccttg
     2581 gttagaaagt ttcttacttg atcaactcct accccacagc atccgaatcc cattgaatca
     2641 cctccatata ttccattatc ggtcatacga tatatagcga aaggatgtat ttatatatat
     2701 cggacatcca atataatgcg tattgcgagg actcgatggc gaatgttgtg atatgagagg
     2761 actgttggga tttctgatcc tcttcttgct atcaaaacaa gcaatgcatg gccaagagat
     2821 agctactgaa ctcgcaaaaa gaaggggtga gaaacccagt ccaggaacaa tttatcctgc
     2881 acttaggagt cttaaagatc taggatttct cagtgaggag aaggaaggca agactataac
     2941 ctacaggctt tctcccaaag gtgaaaaggc cttcgaaata gccaagaaaa gatttacgag
     3001 aacatttttg ggagttatta catagtaaca ttttcacctt tagacccgat aggaatacaa
     3061 tttattttat ctatattact attttgtaat gtgtaatgtg caagaattga atttctttct
     3121 taagaacctt aaaagataaa ccataaagta atatcaatcg tagtattatg caagcattga
     3181 tcacaatcaa caaagacatg gactctataa cttcaattct atatgagact ctaaaaataa
     3241 cgccatttaa aagagactat gatgcctcat ttggaaagat aactataatt ctaaaacgct
     3301 ataatctaaa cgaaaatccg agaaacctgc gctttaggtt tactctattt atgcaagaat
     3361 tttttgattc tgttccacaa gatcaatgga atcttaaaga ccctaatttc ataaagcaat
     3421 ctgaagaatt tgcaattagg aaattcaagg aatggatatt agatcaggta acataattta
     3481 tctacatttc tcagacaaat aatagtagtt catcatgaat caagctgttg ttaatcaaaa
     3541 tttaatggtt caagttccac aatcagtcct tcgttccact gatatttcgc attcatcatc
     3601 tctgaaacct gttcagctaa ttgactttcc ttcaagaaat cgattattct tgccctacct
     3661 tcataattca aaccgtcaat tctaaatgaa attctaggat tatgattaat atttcggacc
     3721 caatgcgcat ttttcccaag ttctgacatt acgtaatatt tcccattata gtttacatac
     3781 catatttcta tcctatgttg tttacccgtt ctccaaccca cagttgtcaa atatagaaat
     3841 tgtgattcaa tcaattgttc atcagatcat acctaggata tttcacttaa gacatcataa
     3901 atctatagtt gactataatt ttgaaatgct ctgagctaga aacatgagtt tacctaggat
     3961 tgtaaaccaa tttcacctaa ttagtagaat ttatatcaag atcatatgat aagttgtatt
     4021 aagagcgaat aaaaagatgg atgcatatct agaagaagag ctttatgaca ttcttaccta
     4081 ctgtatacag aatccccaag catcagattt tgaaaccaaa aaacaaaggg tatctatgat
     4141 tggtaaagag ctttatgatg atggaggaaa tgacgccatg gagaatatgt tttattcaat
     4201 tgaatttaga ataaaagacg aaattggaaa ggatgccaag caatatcgat cttggtggaa
     4261 cagtatatca gatgattgga aatattagaa atattagtag taaaattttg gtactgtaag
     4321 tacctgttaa tatgttattt cctgcgtaag tcaaatttct aagatggttg ttaacattgg
     4381 ttgggaagat aatgaattat tttttacaga taaatagcat aagttgttta gaaattatat
     4441 tgaattgaat ctgtataaat cgctaacagc ttgcgcgatg tgtcatcaac taactcctac
     4501 tgatacgatg acaagtacaa gggtaggaag aatatgcaca agatgcgaca ttcaaatgac
     4561 caaagcggga aataagatga agttaaacaa aacaactaag gttacaaaaa attaatgaaa
     4621 cagccgaggt agctcaatat ttgaaatatt ttaatactta tatgcatact tcgcagttaa
     4681 agattgagaa cgaaagtcat tatgagatct gaagcaagga aaaattgtgg acttatctat
     4741 caaacaccca gatgccaccc ttttgtaaaa tgggcgggag gtaagagcca attaatacct
     4801 caaataattc atctcatgcc agcaaaattt accagatact ttgaaccatt ccttggtgga
     4861 ggagctgtat tctttcatat cgcttcctat aataggaacg cattcctttc tgacatcaat
     4921 actgatttaa ttaacgccta taaggtcata aggaaccatg tagaagaact tattccagta
     4981 ttaaattacc atcaaaacga atacaataaa tctcctaaaa attactatta ttacttacga
     5041 gattcgacgc gggtgtttaa caaaatagat accgccgctc gattcatagc actaaataaa
     5101 acatgttata atgggctgta tcgcgtaaac aaaaacggtt tatttaatgt tccaattgga
     5161 agatacaaaa atccaatcat atgtgatgct gataacttac gcaatatgag tgttgtattg
     5221 aaacagtctg gatcaaattt gggagttagt ggttataaga aaatattagt tgaaaaagct
     5281 gaaaaagatg attttatata ccttgatcct ccattccatc caatcagtaa tactgcgaat
     5341 tttaccagtt ataccaacaa tggttttact cttgaggacc aaaaagaact tgcaattata
     5401 ttcaatgaat tgacaagaag agg
//
LOCUS       DASUMD010000229         4139 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_310466, whole genome shotgun sequence.
ACCESSION   DASUMD010000229 DASUMD010000000
VERSION     DASUMD010000229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4139)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4139)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4139
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_310466"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            63..1682
                     /locus_tag="VFX26_06230"
     CDS             63..1682
                     /locus_tag="VFX26_06230"
                     /inference="COORDINATES: protein motif:HMM:NF024977.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX5574110.1"
                     /translation="MTIALKVHPSFFKEFATKTWVSPADVIKELIENAFDEDATRVLI
                     TILGDNSISIEDNAGMDESEIQKFLLLGSPHKKVDSISPKLKRVRTGRYGTGRLSFLT
                     SFEKMKIRTRKGNYHKSFLIDTKSLDALFTGKSNLHEIRETRLSRDGTEIVVSDPKSF
                     VDELRLIKEIRKLAVLRHPLFEVYIKKSAKFKEWSFSEAELIGVPEIQGHRIPLGLDK
                     GNIVGEITVARRPLTEDERGIAVMVGGHIVMRTLFGFDSKIPRVTGFVRCDSLTSRFA
                     DKSAIIEDKEFENFSNLMKKFIVDTVIPSLTLYEDVLVTREESKIYKQIDKVLGQAVI
                     ETLEPYEEIEGYEIVETKKTVSKASSKPSSIPAEDNLFDKSIDDEYKDITKNEIKRSR
                     DTVSEKERSQQTLGGGDNTVPNYLYSGQSTDSENYENVTVTTQIRKPLIKKTFALKKV
                     GYKIIPYEDETDSRYSFINENVVFVNKANPTYKAESSRGDEFLLRHIMNIVAQAVAES
                     RHPEGKDALELQNRLVSEAIRIHDTFITKSP"
     gene            1770..2351
                     /locus_tag="VFX26_06235"
     CDS             1770..2351
                     /locus_tag="VFX26_06235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proteasome subunit beta"
                     /protein_id="HEX5574111.1"
                     /translation="MPGATAIGMTYQDGITLAAEKRISYGNFVVNKNTRKIFPITDQI
                     ASACAGMVADMQVLTRQVGALAKIRKLETRREMATNSVAKLMSVIMFERRYFPLLTQV
                     IVGGVQTTPEIYTLDPLGSLLPDNYAAVGTGAELALGLIDSEYKKNMSEDASKKLAIK
                     AIKSSVQRDSASGDGIDILTITKKGIEQESINL"
     gene            complement(2402..2878)
                     /locus_tag="VFX26_06240"
     CDS             complement(2402..2878)
                     /locus_tag="VFX26_06240"
                     /inference="COORDINATES: protein motif:HMM:TIGR00451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PUA domain-containing protein"
                     /protein_id="HEX5574112.1"
                     /translation="MHSISKREVHEITDQISKSWPTNSIGTIKDLQAYVIDGNVRLLV
                     GNNLVAIQLAPDLIIPHLTQHDLLNHFASVQVDMNAVKHVCNGANIMRPGITDFTTFK
                     ESEIVLVKDQTHKKELAVCISLVDDVNGRKMERGVVLNNIHHIGDVYWETKKTIRT"
     gene            complement(2983..3516)
                     /locus_tag="VFX26_06245"
     CDS             complement(2983..3516)
                     /locus_tag="VFX26_06245"
                     /EC_number="2.7.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000309 - nicotinamide-nucleotide
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide-nucleotide adenylyltransferase"
                     /protein_id="HEX5574113.1"
                     /translation="MSRGLFIGRFQPFHLGHIAAIKFAFTNVDELIIVIGSSQASYDT
                     QNPFTAGERLSMIKDSLNADTMIDCKKTLIVPVPDTNVHSTWTHTVDMLVPKYDVVFT
                     NNAFTGYLFIQRNITVTEPKLLNRDNLSGTEIRRRMLKKIKWTHLVTEQTQIVIQNIN
                     GVERVKKLASLSHHHNI"
     gene            3601..>4139
                     /gene="sufC"
                     /locus_tag="VFX26_06250"
     CDS             3601..>4139
                     /gene="sufC"
                     /locus_tag="VFX26_06250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HEX5574114.1"
                     /translation="MVFLDINNLSANIDGKQILNSLCFGMDRGQVHAIMGPNGSGKST
                     LANVIMGHPKYTVTSGTILVDGENILDMPTEERAKRGLFLGFQYPTEIPGVGYSHFLR
                     NAYNILNKSLSGKQKDREVFLTVKEFHEYLKKNLDNVGLQTTFLSRYLNEGFSGGEKK
                     RSEVMQMLVLKPIIAILDEP"
BASE COUNT         1427 a          686 c          807 g         1219 t
ORIGIN      
        1 atgagattga taaaaataca aacgagtaat aaataaaggt gagagattga aacatagtaa
       61 ccatgacaat tgccctaaag gtgcatccat ctttcttcaa ggaatttgct acaaagacat
      121 gggtttctcc tgctgacgtc ataaaagagt tgattgaaaa tgcctttgac gaggacgcaa
      181 caagggttct aataactatt cttggggata attcaatttc aattgaggat aatgcaggaa
      241 tggatgaaag tgagattcag aaattcttgc ttctaggttc accccataag aaagttgatt
      301 ctatttcacc aaagttaaaa cgggttagaa caggtagata tggaacaggt agactttctt
      361 ttcttacatc atttgaaaaa atgaaaatta gaactcgaaa gggtaactat cataaatcat
      421 ttttaatcga tacaaaatca ctagatgcac tatttaccgg caagtctaat ttgcacgaga
      481 tcagggaaac acgcctatca agagatggaa cagaaatagt tgttagtgat cccaaatcat
      541 ttgttgatga attaaggcta ataaaggaaa ttagaaaatt ggcagtactt aggcatccac
      601 tttttgaagt atacataaaa aaatcagcaa aatttaaaga atggagtttt tctgaggctg
      661 aattgatagg ggttccggaa atacagggtc acagaatacc attaggcctt gacaagggaa
      721 acatcgtggg cgaaataact gtagctcgta gaccactaac ggaagatgag cgaggaatcg
      781 cagtaatggt aggcggtcat atagttatga ggaccttatt cggatttgat tccaaaatac
      841 ccagggtgac tggatttgta agatgcgatt cattaacatc tagattcgct gataaatccg
      901 ctataataga agataaggaa tttgagaact tttcaaacct tatgaaaaag ttcatagtcg
      961 atacggtcat acctagtctt actctctatg aagatgttct tgtcactcgt gaagagtcaa
     1021 aaatttacaa acagatagat aaagttcttg gtcaggccgt aattgaaacc ctcgagccgt
     1081 atgaagaaat agaaggatac gagatagttg aaaccaagaa aacagtatca aaagctagta
     1141 gtaaaccatc atccattcct gcggaagata atttgttcga taaatcaata gatgatgaat
     1201 acaaagacat tactaagaac gaaatcaaac gatcaagaga cacagtaagt gaaaaagaaa
     1261 ggagtcagca gaccttggga ggtggtgata atacagtacc aaattaccta tacagtggac
     1321 aaagcacaga tagtgaaaac tatgaaaatg taacggttac aactcagata agaaaaccac
     1381 taattaagaa aacttttgca ttaaaaaaag ttggatacaa gatcattccc tacgaagatg
     1441 aaactgattc aagatatagc ttcataaacg aaaatgtagt atttgtgaac aaggcaaatc
     1501 caacatataa ggcggaatca tcacgaggag atgaattcct tttgaggcac atcatgaaca
     1561 tagtagcaca agctgtagct gagtcaagac atccagaagg aaaggatgca ttggaattgc
     1621 aaaacaggct ggtttctgag gcaattagga ttcacgacac attcataaca aaatctcctt
     1681 gacctattgt aattacacag tctaaaaatc gacgaaacga ctaaatctaa ctacattaac
     1741 tactaaccaa tcatatggcc tttcaattta tgccaggtgc taccgctata ggtatgactt
     1801 atcaagacgg cattactctt gctgctgaaa aacgtatctc gtatggaaat tttgttgtaa
     1861 ataagaatac gaggaaaata ttcccaataa cagatcaaat tgcgagtgca tgcgcaggta
     1921 tggttgctga tatgcaagtc ttgacaagac aagtaggagc actcgcaaag attagaaaat
     1981 tagaaacaag gagggagatg gctacaaatt ctgtcgctaa attaatgtca gtcataatgt
     2041 tcgaaagaag gtactttcca ttactgaccc aggtaattgt tggaggcgta cagactacac
     2101 ctgaaattta tacactagat ccattaggtt cacttcttcc tgacaactat gcagcagtag
     2161 gtactggagc agaattagct ttgggactga tagattcaga atacaagaaa aacatgtcag
     2221 aagatgcatc caagaaactt gctatcaagg caataaagtc gtcagtacag agagattcag
     2281 caagtggtga tggtattgat atcttgacga taacaaaaaa gggaattgaa caagaatcta
     2341 tcaatctatg attgaaggat ttattatcaa aatcactaat tttctgaaat cgccaacagt
     2401 attatgtcct gatggttttt ttcgtttccc aatatacatc cccgatatgg tgtatattgt
     2461 tcaaaacaac tcccctttcc attttccttc cgttcacatc atcaactagc gatatacata
     2521 ctgcaagttc cttcttgtga gtttgatctt ttaccagtac tatctcggat tctttgaaag
     2581 tagtaaaatc tgtaatgccc ggtctcatga tatttgcgcc gttacaaaca tgtttcactg
     2641 cattcatgtc gacctgtact gatgcaaagt ggttcaatag atcatgttgc gttagatgtg
     2701 gaattataag gtcaggtgcc aattgtattg caactagatt gtttcccaca aggagccgca
     2761 catttccatc tataacgtaa gcttgtagat ccttaatggt accaatggaa ttagttggcc
     2821 aagatttact aatctgatct gtgatttcat gtacttctct ctttgatatt gaatgcactt
     2881 tcaattattt tgttgtcgtt tttgaattat ttattaatat ccataatcga gtttctttac
     2941 actagagtag atgaatcgaa ataattcgtt gatatttgat actcaaatat tatgatgatg
     3001 tgacaaactt gccaattttt ttacgcgttc aactccatta atattttgga ttactatttg
     3061 tgtttgctca gtaacaagat gagtccattt aatttttttc aacattctcc ttctaatttc
     3121 agtgcctgaa agattatcgc gatttagtag ttttggttct gtcacggtga tatttctttg
     3181 tatgaaaagg taacctgtaa atgcattatt tgtaaaaaca acatcatact tggggactaa
     3241 catatcaaca gtatgagtcc atgtagaatg gacgtttgta tcaggaacgg gaactatcag
     3301 ggtctttttg caatctatca tggtatctgc attcaacgag tcttttatca tagatagtct
     3361 ctctccggca gtaaatggat tttgtgtatc ataacttgcc tgagaactac caatgacaat
     3421 tatcagttca tctacattgg tgaacgcgaa tttgattgcg gcaatatggc ccaaatggaa
     3481 cggttgaaac ctaccaatga acaaacccct tgacaaattg gtataaaata taagatgaat
     3541 aatttaaatt ttgaataatg tgactcaata tttatattat gtttaaaaaa caagagattt
     3601 gtggtttttt tagatataaa taacctgtca gccaatattg atggtaaaca aattctcaat
     3661 tctctctgct ttggaatgga cagaggtcag gttcatgcta taatgggtcc aaacggctct
     3721 ggaaaaagca ctcttgcaaa tgtgataatg ggtcatccaa aatatactgt tacatcaggg
     3781 actatactgg ttgacggcga aaacattctt gatatgccta cggaggaaag agctaagaga
     3841 ggcctcttct taggttttca ataccctaca gaaattccag gagtgggtta tagtcatttt
     3901 ttgaggaacg cttacaacat tctaaataaa agtttgagtg ggaaacagaa ggatagagag
     3961 gtatttttaa cggtaaagga atttcatgag tatctgaaaa aaaatttaga taatgttggt
     4021 cttcaaacaa catttttgag tagatatttg aatgaaggct tctctggcgg ggagaaaaaa
     4081 agatctgaag ttatgcagat gcttgtacta aaaccaataa ttgccattct tgacgaacc
//
LOCUS       DASUMD010000230         2395 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_310665, whole genome shotgun sequence.
ACCESSION   DASUMD010000230 DASUMD010000000
VERSION     DASUMD010000230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2395)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2395)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2395
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_310665"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..550)
                     /locus_tag="VFX26_06255"
     CDS             complement(<1..550)
                     /locus_tag="VFX26_06255"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: protein motif:HMM:NF013007.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEX5574115.1"
                     /translation="MGKVKIRNLEIGNGKPKIMGIINASPESFYKESIATGKKIISER
                     AIEMEEQGADIIDIGGMSTAPYGHNLVSANKEVERLRNSISAVKDVCSIPLSVDTPRA
                     EVARVSIDMGVDLVNDVTGLKYDEKMKSVVFSSGLPVIIGAYGDRSVTYNSGDIAETI
                     DILQKSLVLADESGISEDKLIVD"
     gene            729..>2395
                     /locus_tag="VFX26_06260"
     CDS             729..>2395
                     /locus_tag="VFX26_06260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574116.1"
                     /translation="MTRTLDKTHTVLSYLEGSLKNAIVMNENVKESGFIFSLINPPVP
                     LGGNIVSLDIYVDELPLSKKSIQIATSDTIVNASALSESRPIQFKPFQSARFLIIGME
                     LDSQKKHKITIMSKLEGFEQIIIPFTFVDFTSNRKEKVIISSNLPEESDTQAYGETMF
                     MNFASPLVLSGRKAYIVCSSNGALSANWTWMGARYDNGGLYVPPARAFGRIIVEISVD
                     EGVRKRLPNFVISSRHENGSLRTHHEVAGIHVKRTLFVPIENKGFIQILNFDSEKIDE
                     IFNSNKKKQTTKKIRVHFLIDGNITSYGLAAISQSNFSRYYKSENCLQIRTIAKKGVA
                     HYFGTIGISPKNLKPSKILTDSFDNDLELSYDVEIEEGLTKEIALIGAGDFTSSQDCL
                     NEYKNIRDNYQKLYEVTKNYHNDISKSTFTIHHASSSSISNSTIAKLTKALKKAKTAL
                     EYLKANYDNLGEGICAGLPRFPNYWARDTGWSLRGYLSMGQYDFSLRVIENFLKRQAK
                     YTHNGAVKGELPMVISGRTFLHNTTYGSADSTFLFPWAIREYVHGTG"
BASE COUNT          815 a          428 c          419 g          733 t
ORIGIN      
        1 gatctacaat gagtttatct tcacttattc cactttcatc tgccaagact agacttttct
       61 gcagaatgtc aattgtttca gcaatatccc ccgaattata agttacggat ctatctccat
      121 atgctccaat aataacaggc aagcccgaag aaaaaacaac ggacttcatc ttttcatcgt
      181 atttaagtcc agtcacgtca ttgactagat caactcccat atcaatggat actctagcga
      241 cttctgctct tggtgtatcg actgagagtg gaatactgca tacatcttta accgcactga
      301 tagaatttcg caatctttca acctctttat ttgctgaaac aaggttatga ccgtaaggtg
      361 cagtagacat tccgccaata tcaattatat cggcgccttg ttcctccatc tcaatagccc
      421 tctcagaaat aattttcttg cctgttgcaa tggattcttt ataaaaggat tcaggactag
      481 cattaataat tcccattatt ttcggttttc cgtttccaat ttcgagattt cttattttta
      541 ctttacccaa acaatttatc actgcttatg agcaatattt cataaaatcg ttgttaaaca
      601 atattacata aactataaac ttatttatac aaactaatct ttcgatcaat agttttaata
      661 taggttaaaa tgccaattaa taagaggact attgaatatt tcctatctag acgctttgga
      721 gacgcataat gacgaggacg cttgacaaga ctcacactgt cctttcatat cttgaaggga
      781 gcctcaaaaa tgcaattgtt atgaatgaaa atgtcaagga aagtggcttt atattttctc
      841 ttattaatcc acctgttcca ttgggtggaa acattgtatc tcttgatatt tatgttgatg
      901 aactaccact atcaaaaaaa tcaattcaaa tagctacatc agacacgata gtaaatgcat
      961 cagcattatc tgaatcaaga ccaattcaat tcaaaccatt tcaaagtgcc aggtttctga
     1021 ttatagggat ggaactagac agtcaaaaga aacacaaaat aacaataatg agtaagcttg
     1081 agggatttga acaaataatt attccattta cctttgtcga ctttacgagc aataggaaag
     1141 aaaaagtaat catttcatca aatttgccag aagaatcaga cacccaagct tacggtgaga
     1201 caatgtttat gaattttgca tcaccgctgg tactttcggg cagaaaggca tacatagtgt
     1261 gttcttcaaa tggagcgctt tcggcaaatt ggacgtggat gggtgcaagg tatgataatg
     1321 gaggattata tgtacctcct gccagagcat ttggaagaat aattgtagaa atttcagtag
     1381 atgaaggtgt tagaaaaaga cttccaaatt ttgtcatttc ttcaagacat gaaaatggaa
     1441 gtttacgtac tcatcacgaa gtcgccggaa ttcatgttaa aagaacttta ttcgttccaa
     1501 tcgaaaataa aggttttatt cagatactta attttgattc cgaaaaaatt gatgaaatat
     1561 tcaattcgaa taaaaagaag cagactacta aaaaaattag ggtgcacttc ctaattgatg
     1621 gtaacattac aagttatgga ttagcagcga tttctcaaag taatttttca agatattata
     1681 aatcagagaa ctgtctacag attagaacaa tagcaaaaaa aggggtagcg cactactttg
     1741 gcactatcgg tatttctcca aagaatttga aaccttccaa aatactcaca gattcttttg
     1801 ataatgattt ggaattatct tatgatgtag agattgagga agggctaact aaggaaatag
     1861 cattaatagg cgctggtgat ttcaccagtt ctcaggattg tctaaatgaa tacaaaaaca
     1921 taagagataa ttatcaaaaa ttgtacgaag taacaaaaaa ttatcataat gatatttcaa
     1981 aatctacttt tactatacat catgcatctt cgagttcaat ttcaaattcg acaatcgcta
     2041 aattaacaaa ggcacttaaa aaggcgaaga cagctcttga atacctaaag gcaaattacg
     2101 ataatcttgg cgaaggaatt tgtgcgggac ttccgcggtt tcccaattat tgggcacgtg
     2161 atacgggatg gtctctaaga ggatatctat ccatgggcca gtatgatttc tccttgagag
     2221 tgatagagaa ttttttgaaa cgccaagcaa agtacaccca caatggtgca gtgaagggag
     2281 aattacccat ggtaattagt ggaagaacat tcctacataa cacaacatat ggatctgcag
     2341 attcaacttt tttgtttccg tgggccattc gtgaatatgt acatggtaca ggaga
//
LOCUS       DASUMD010000231         8382 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_641503, whole genome shotgun sequence.
ACCESSION   DASUMD010000231 DASUMD010000000
VERSION     DASUMD010000231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 8382)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8382)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8382
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_641503"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..258)
                     /locus_tag="VFX26_06265"
     CDS             complement(<1..258)
                     /locus_tag="VFX26_06265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574117.1"
                     /translation="MDYTKVCKEILDLDPKIRFAGVCDESGEIKFGGQREGLANLLTA
                     EETKRSNLQALARWGLRNSLSSKVGKGKYAMAEYEKIKRITA"
     gene            475..1485
                     /locus_tag="VFX26_06270"
     CDS             475..1485
                     /locus_tag="VFX26_06270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthetase"
                     /protein_id="HEX5574118.1"
                     /translation="MTCKVIVGGFYGDEGKGKIIAYLSIKDKPKIAVRGGVGANAGHT
                     FVYNNQTFKVRMLPSAVLNPETKLLIGAGVLVTPSVLKEEFQRYNAGNRTIIDNHCGI
                     IDESHIRRDMEDAHLKKIVGTTGTGTGPANSDRALRILKLAKDISELKNYLGCVSDIV
                     NESIDGGRSVLIEGTQGTFLSLYHGDYPFVTSKDVTASGICSDIGIGPKKVDDVILIF
                     KAYVTRVGGGPLENEITADEASKLGWVEYGSVTGRQRRASPFNMELAKKSVTINSATQ
                     IAVTKLDVVFPDCAGLKDYSKLTPQAKNFIQQIEDRLGVKVVLIGTGAEIYDIIDRRT
                     EN"
     gene            1588..2268
                     /locus_tag="VFX26_06275"
     CDS             1588..2268
                     /locus_tag="VFX26_06275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574119.1"
                     /translation="MQIKSPFFIEVSTIQDFGRLVCAFERTPLLTFSFKSANDDLLAT
                     QIDFLNNIPVIYYVKYPSGGQYLAYKNTNGIEDVSIVENIQNPSVMYSPIISVDKFPP
                     IFWRRPKGAKNSNYAPIKLSNFQSIVKIASYKMIYEESPLPLFVFNSTKKSKYVVGTA
                     LNMAESDGVSYFYYATIPENPTYSFIRYSSLKSEDPTFTNNIQEHGYIYIKLIKLFGS
                     HPLVKVDE"
     gene            2261..3016
                     /locus_tag="VFX26_06280"
     CDS             2261..3016
                     /locus_tag="VFX26_06280"
                     /inference="COORDINATES: protein motif:HMM:NF012441.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine 5'-phosphate decarboxylase"
                     /protein_id="HEX5574120.1"
                     /translation="MNKDSSYRDRIAHISMDNKSFIILALDLEPRYHNLKYIENLISN
                     IYPFLCGIKINFHLILPFGNKGIAKINRMIHSYGLLSLADIKLNDISNTNQVTLRYLY
                     SMGFDSVIVNPIIGQKQLKSLVRFAHKLGMGVISLVYMSHENASEGYGLKVFQGKSNK
                     SKILPLFEIFLKYAKKSNVDGIVVGATHLKTLKYISSVSSIPIYSPGIGIQGGNPKLA
                     IDNGSNFLIIGRTILHSKNRRKTISNLLDLDEI"
     gene            complement(3113..3571)
                     /locus_tag="VFX26_06285"
     CDS             complement(3113..3571)
                     /locus_tag="VFX26_06285"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEX5574121.1"
                     /translation="MITEKSAGFILISDNDSHNNDRSVLLLHYVSGHWDFPKGNIEIN
                     ENELQAATRELKEETGIENFTLLPGFKYILNYKYTRKSTLISKQVTLFLASTKVNKVR
                     ISHEHIGYQWTDFNSSVKNLTYSNAKNALIYAMKYLKALPSNTNHKNPDS"
     gene            complement(3602..3751)
                     /locus_tag="VFX26_06290"
     CDS             complement(3602..3751)
                     /locus_tag="VFX26_06290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574122.1"
                     /translation="MPEHGDYDQEKIRWFCNRWMDRKQWLEIHGYSPVSTDIDLDEKD
                     VTETS"
     gene            complement(3793..4584)
                     /gene="uppS"
                     /locus_tag="VFX26_06295"
     CDS             complement(3793..4584)
                     /gene="uppS"
                     /locus_tag="VFX26_06295"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl diphosphate synthase"
                     /protein_id="HEX5574123.1"
                     /translation="MYGFFYYLINNNWFYRFYERKLESQIKKDSLPNHVAIILDGNRR
                     WAKYNFLANKGAHAMGADKAEQLLTWIYDLKIKITSLYVLSIENLERDKKELDDIYNL
                     LGIKLEKLYNDSRIHEREMKIKAIGNIEVLPQSIKDILFKLEKETNHYDLTYLNIAIA
                     YGGQQELVEAIRKIALDVEKKELQISDINEQSIDSYLYTSHLPQPEPDLILRTSGEKR
                     LSGFLLWQSAYSELVFMDVFWPEFRKIDLMRAIRTFQRRRRRYGK"
     gene            complement(4641..5804)
                     /locus_tag="VFX26_06300"
     CDS             complement(4641..5804)
                     /locus_tag="VFX26_06300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF373 family protein"
                     /protein_id="HEX5574124.1"
                     /translation="MPKDLEYMRDKRSLDYGSISTHYKRVLVVCIDRDDDLGKNGGVE
                     SPVFGRDQCINAGTRLAIEDPEDADANAIFGAVKIYEELVTKGYEAEVAVITGAYNRG
                     IEADEKISSELMEVLSKFKAEGTVIVSDGEDDETVIPLIQAIVPVISIQRIIIRHSRS
                     VEYSYAVFGKYVKMLVYDPRYSKFFLGVPGALLISSGFATIFGFTREALAIVLSVLGV
                     AFIIRAFDIDKSLGSLNRTTPSTFIRIFSTFAGIMIILVGIANGISDIPDGAIPKDAS
                     LSEIITNRAVVGAFVNGSITLIWIGLATIFGGILLSNWFKGSIRILSDILRLVVLGLI
                     YIPAIQFTSVLTEQANPFNLISSLLIGLAITLVATTFLFQYFRNKKGGEQLKH"
     gene            6007..6351
                     /locus_tag="VFX26_06305"
     CDS             6007..6351
                     /locus_tag="VFX26_06305"
                     /inference="COORDINATES: protein motif:HMM:NF016157.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF424 family protein"
                     /protein_id="HEX5574125.1"
                     /translation="MTSSNSSSKDQTSKYAIRTIRYQDSLMVNVCDLYLIDKQIQHGD
                     ITIDIKKNYWMDKVADESEIESFLKKSSISNLAGKDIVDKAIELNLAKKSSVKYFSDV
                     PFLMIYRFRESY"
     gene            6413..6982
                     /locus_tag="VFX26_06310"
     CDS             6413..6982
                     /locus_tag="VFX26_06310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HEX5574126.1"
                     /translation="MDKNDHLNLSLHIPEERISVVIGNKGKTKNEICKKCNVKIEIES
                     KTGEITVSSTSKNFDGYGALKARDIITAISSGFSPERAFRILDEETLFQILDLRNFTS
                     STNSTNRIKSRIIGEKGKARKNLEELTNTYISIYGHIIGLIGNYEETKLAIDAIMLLI
                     NGRSHKTVYEMLYQAKRRSKIEKLQLWEN"
     gene            complement(7133..7711)
                     /locus_tag="VFX26_06315"
     CDS             complement(7133..7711)
                     /locus_tag="VFX26_06315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HEX5574127.1"
                     /translation="MTSETKHDKIVIGFSGASGIIYGIRLLEILHSINIQTYLIISEW
                     AKKNIEIETDKTLEYVKSLSSVNYDNFKLDASVSSGSFLHDGMVIVPCSMKSLSSIAN
                     GYDDTLISRAASVTLKESRKLIIVPRETPLSRIHLENMIKLQEAGAIILPAMPGFYHK
                     PSTIDEIIDHLVGKILDQLKIEHDLFKRWKDQ"
     gene            7763..>8382
                     /locus_tag="VFX26_06320"
     CDS             7763..>8382
                     /locus_tag="VFX26_06320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HEX5574128.1"
                     /translation="MLTIFGTIALDTTRTPFHTVERTLGGTATFASISASNYVPTSLL
                     GIVGYDFPAAYLELLKNRLDIRGLTISQTEKTFHYDSSFAYDLAKRTTNKTELNVIAN
                     YQSTIPDDYIDSEYVYLANNDPVQNMNILKLFSGPKLVICDTMDFWIINKRDDVIKMI
                     KKVDGIMLNESEAKLLFKENNILKCARLLVLNGPAFAVINKGENGSL"
BASE COUNT         2733 a         1481 c         1457 g         2711 t
ORIGIN      
        1 agcagtaatg cgttttatct tctcgtattc tgccatagca tatttccctt tgccgacttt
       61 ggaagataga gaattgcgca atccccatct agcaagcgcc tgcaaatttg atctctttgt
      121 ttcttcagca gttagtaagt tcgccagtcc ttcgcgttga cctccgaatt tgatctcacc
      181 agattcgtca catacaccgg caaaacgaat ttttggatcc agatctaata tctctttaca
      241 cacctttgta taatccattt taaataatat gattattccg aatcgactat ataaaattgt
      301 gtcatcttat aatattctga atcttggatg tttatacttt gacaacttga tacaggatta
      361 atacacgggt atcaatgaaa aattccaaag actcaattag cctttcttcg tccaattatg
      421 ttttaggacg cttgattatc cttatattta cttgtaattt aattgaaata gaaaatgact
      481 tgtaaagtta ttgtaggagg tttttatggc gatgagggaa aaggaaagat aatcgcatat
      541 ttatccataa aggataaacc aaaaatagct gtaagaggtg gagttggagc aaatgccggc
      601 cacaccttcg tttataataa tcaaactttc aaggttcgga tgttgccaag cgctgttttg
      661 aatcctgaaa ccaaactctt gataggtgcc ggagtacttg tcacaccaag tgtccttaaa
      721 gaagaatttc agagatataa tgcaggaaac aggacaataa ttgataatca ttgtggaatt
      781 attgatgaat cgcacataag gcgcgatatg gaagatgcac atctcaaaaa aattgttgga
      841 acaactggaa caggtacagg tccggctaat tctgaccgtg ccttaagaat ccttaagctg
      901 gctaaggaca taagtgagct taagaattat cttggatgtg tgtctgacat tgttaatgaa
      961 tcaattgacg ggggccgatc agtactcata gaaggaacgc agggaacttt tctatcatta
     1021 taccacggtg attatccatt tgtaacttca aaagatgtta ctgcttcagg aatatgttca
     1081 gatattggca taggacctaa gaaggtcgac gacgtcatcc tgatctttaa agcgtatgtg
     1141 actcgtgtgg gtggtgggcc attggaaaat gaaattacag ctgatgaggc tagtaagttg
     1201 ggttgggtag aatatggaag tgtgacggga agacaaagga gagcatctcc atttaatatg
     1261 gaattggcca agaaatctgt cacgataaac agtgcaacgc aaatagccgt taccaaatta
     1321 gatgtggtct ttcctgattg tgcgggtcta aaagattact ctaaattaac tcctcaagca
     1381 aagaatttca ttcagcagat agaggacaga ctaggagtta aagttgtcct cataggaacc
     1441 ggagccgaga tatatgacat aatagatcgt cgaacagaaa actaattcaa aagactccta
     1501 aattacattc tattcaaaac aaatgcttgt ctaaacaaac ctctttattc gcatgatttt
     1561 aataatgtta ttttagaacg tagagcattg caaattaagt cacctttctt tattgaagtt
     1621 tccactattc aagattttgg cagactagtc tgtgcctttg aacgaactcc acttcttact
     1681 ttttccttca agtctgccaa tgatgattta ttggcaactc aaattgattt tctgaacaat
     1741 atacctgtaa tttattacgt aaaatatcca agtggtggcc aatatcttgc atataaaaat
     1801 acgaatggta ttgaagatgt gtcaatagta gaaaacatac aaaatccatc agtgatgtat
     1861 tctccgatca tctcagttga caaatttccg cccatttttt ggcggaggcc taaaggtgca
     1921 aaaaactcca attatgcacc aataaagttg agcaatttcc aaagtattgt aaaaattgcg
     1981 tcctacaaaa tgatttatga agaatcacca cttcctctct ttgttttcaa tagtacaaag
     2041 aagtcgaaat atgttgtagg gactgctctg aatatggccg aatctgatgg agtgtcctat
     2101 ttttattatg caacaattcc tgaaaatcct acttattctt tcattagata ttctagtctg
     2161 aaatcagaag atccaacatt tactaacaat atacaggaac atggatatat ttacattaaa
     2221 ttgataaaat tatttggatc acatccatta gtgaaagttg atgaataaag attcctcgta
     2281 tagagatcgc attgcacata tttcgatgga taataaaagt ttcataatac ttgcactaga
     2341 cttagaacca cgctatcata atcttaagta tattgaaaat ttgataagta acatttatcc
     2401 attcttatgt ggcatcaaaa taaattttca tcttattcta ccatttggta ataaaggcat
     2461 tgcgaaaata aacaggatga tacattcgta tggcttgctt tcattagccg atataaaatt
     2521 gaatgatatc agtaatacca accaggtaac gttacgatat ttatattcaa tgggctttga
     2581 ttcagtaata gtaaatccaa taattggaca aaaacaatta aaatcgcttg ttcgttttgc
     2641 ccacaaactt ggaatgggag taatctcgct tgtttatatg agtcatgaaa acgctagcga
     2701 aggatatggc ctgaaggttt tccagggaaa atcaaataaa agcaagattt tgccgctctt
     2761 tgagatattc ttaaagtacg ccaaaaaaag taatgttgat ggaattgtag taggagctac
     2821 acatttgaag actctaaaat atatctcatc cgtttctagt attcctattt attcccctgg
     2881 tataggtatt cagggcggta acccaaaatt ggcgattgat aatggaagca actttctaat
     2941 aattggtcga actattttac attcaaaaaa tagacgcaag acaatatcaa acttgctcga
     3001 tttagacgaa atctagatta gaaaaattgt tgtattttga tcaaataatt cgtaactaca
     3061 tttgtagatt attttaacat taaatgttgt ttcaacgcaa gatatcataa tgttaagagt
     3121 caggattctt gtgatttgtg tttgaaggaa gagcctttaa atatttcatg gcgtaaatca
     3181 atgcgttttt tgcatttgaa tatgttaaat tttttactga agagttaaaa tctgtccact
     3241 gatatcctat gtgctcatgt gaaattctta ctttgtttac ttttgtggag gcaagaaaca
     3301 aagttacttg ttttgaaatc aaagttgatt ttctagtgta tttataattt aatatgtact
     3361 taaagcctgg taacaatgta aagttctcta ttcctgtctc ctctttcaat tccctggtag
     3421 ccgcctgcag ttcattttcg ttaatttcga tatttccttt tggaaaatcc cagtgacctg
     3481 atacataatg aagtagtaat acagaacgat cattattatg agagtcatta tcagaaatta
     3541 ggatgaaacc tgcagatttt tctgtgatca taccaatatc tcaatttgaa aaccatatgc
     3601 actaactggt ttctgtaacg tctttttcat ccaaatcaat atccgtagaa actggagaat
     3661 agccatgaat ctctaaccat tgtttcctgt ccatccacct gttacaaaac caccttattt
     3721 tttcttgatc gtaatcacca tgttctggca atgatattat atttggaata tgatagccat
     3781 atcaatattc tcctatttgc cataccttct acggcgcctt tgaaatgtcc ttattgccct
     3841 cataagatca atctttctaa attctggcca gaaaacgtcc ataaatacca attcactgta
     3901 tgcgctctgc cataacagaa atccgctcaa tctcttttca ccagaagttc ttaggataag
     3961 gtccggttct ggttgtggca aatgtgaggt atatagatat gaatcgattg attgttcgtt
     4021 aatatctgat atttgtagtt cttttttttc tacatcaaga gcaatttttc ggattgcctc
     4081 aaccaattcc tgctgtccac catatgcgat agcaatattt agatatgtga ggtcgtaatg
     4141 attggtctcc ttttcgagct tgaatagaat atcttttatt gactgcggaa gaacttctat
     4201 atttccaata gcctttattt tcatctccct ctcgtgtatt ctggaatcat tgtataattt
     4261 ctcaagtttt attccaagta gattatagat atcatccaat tctttcttgt cgcgttcaag
     4321 attttcgata gataatacgt ataaactagt tattttgatc ttcagatcat agatccaggt
     4381 tagcaactgt tcggccttgt ccgcgcccat cgcatgcgca cccttattgg ccaaaaaatt
     4441 gtatttagcc catcgtctgt tcccgtctaa tattattgca acgtggtttg gtagagaatc
     4501 tttttttatt tgcgattcta gtttgcgttc atagaatcta taaaaccaat tattattgat
     4561 gaggtaataa aaaaaaccat acatttgctc tctaattaat tgattttaaa tcatataata
     4621 acgctatgta ggtaatggtc ctaatgtttc agttgttctc cacctttttt gtttctgaaa
     4681 tattgaaaca aaaatgttgt agcaacaagt gtaatagcta gaccaataag caaggatgaa
     4741 ataagattga aaggattggc ttgttcagtc agaactgaag taaattgaat tgcaggtatg
     4801 taaatcaaac caagtacaac taacctcagg atatctgaaa gaatcctaat gctcccctta
     4861 aaccagttac taagaagtat tcctccgaaa atagtagcta gacctatcca aataagggtt
     4921 attgagccat taacaaaagc tcctaccacg gccctatttg tgatgatttc tgagagacta
     4981 gcgtccttcg ggatagctcc gtccggtatg tccgatatac cattagcaat gcctaccaag
     5041 attatcatga tccccgcaaa tgttgaaaat atcctgatga acgttgaggg tgtagtccta
     5101 ttaagcgatc ctagtgattt gtcaatatca aaagccctga ttataaatgc aactcccaat
     5161 acactaagaa ctatggccaa agcttctctc gtaaaaccaa agatcgtagc aaaaccactt
     5221 gaaatgagta gggccccagg tacgcccaag aagaatttcg aataccttgg atcataaact
     5281 aacatcttta catattttcc aaaaacagca tacgagtatt caacggatct actatgccgt
     5341 atgattattc tctgtatgga tattacggga actattgcct ggattagtgg gattacagtt
     5401 tcatcatctt ctccatcgga aacaatgaca gtcccctcgg ccttgaattt tgacagaact
     5461 tccattaatt ccgaagatat tttttcatct gcttctattc ctctattata agcaccagtg
     5521 attactgcaa cttcagcctc ataacctttt gtcacaagct cctcatagat cttgacggca
     5581 ccaaagattg cgttggcatc ggcatcttct ggatcctcaa ttgctaacct agttcctgca
     5641 tttatacatt gatctcttcc aaacaccggg ctttcaactc ctccgttttt gcctaggtca
     5701 tcgtctcggt ctatacagac aacaaggact ctcttataat gagttgaaat ggaaccatag
     5761 tccaaactcc tcttgtccct catgtattct aggtcctttg gcaatttttc tacgacctaa
     5821 aatatgtagc agaggctaat taatttgatg gtccaatgat agtattaatt tttagtaata
     5881 atattacaat aaatgatgaa tgacaactag aattcactga tatattttat tcaaaggttc
     5941 atgaaatatt attactggaa gtccaaacac aaaacttatc taaatacgtc tgcatcaaag
     6001 tatcatttga cttctagcaa tagcagctct aaggaccaga cgtctaaata cgcaataaga
     6061 actattagat atcaggattc acttatggta aatgtatgtg atctctatct gattgataag
     6121 caaatccaac atggtgatat tacaatagat ataaaaaaaa attactggat ggataaagta
     6181 gcagacgaaa gtgaaataga atctttttta aaaaaatcat ctatctctaa tctcgccggt
     6241 aaagatatag ttgataaagc aattgaattg aatcttgcaa agaagtccag tgtcaagtat
     6301 ttttcagatg ttccatttct tatgatttat agattcagag aatcctacta agcgtaaaaa
     6361 gtcaaacaat aaataaataa ttacagtgtc atgttctaag tagggttttc tattggacaa
     6421 aaatgatcat ctaaatttat cactacatat accagaagag cgaatttccg tagttatagg
     6481 aaataaggga aaaactaaaa acgaaatttg taaaaaatgc aacgtaaaga tagaaattga
     6541 aagtaagaca ggagagataa cagtatcttc aacttcaaaa aatttcgatg gatatggagc
     6601 gctaaaggca agagacatca tcactgctat ttcgagtggt ttttcccctg aaagggcatt
     6661 taggatctta gatgaggaaa cactgtttca aattttagat cttcgtaatt ttacaagctc
     6721 taccaattct accaatcgga taaagagcag gattattggc gagaaaggga aggctagaaa
     6781 aaatcttgag gaattaacta acacctacat ttcaatatat ggacacataa taggtttgat
     6841 aggcaactat gaagaaacaa agctagctat cgatgcaata atgttactaa ttaatggaag
     6901 atctcacaag acagtctacg aaatgctcta tcaagcaaag aggagatcaa aaatcgaaaa
     6961 gttacaactc tgggaaaatt aagagaccgc tcaaaatcgt tactatggat aagctcatat
     7021 gatcttttca tcttgtttta ttatttttct tatttcgatt ttctatttgt attttattct
     7081 tgtttaagcc atgctaggtt ttctaatggg aaaaataatg tgagaaattc ttttattgat
     7141 ccttccatct cttgaacaga tcgtgttcta tttttaattg atcaagaatc ttgccaacca
     7201 aatgatcaat tatttcatct atcgtcgacg gtttatgata aaaccctggc atggctggaa
     7261 gaataattgc accagcttcc tgtaacttga tcatattttc aagatgaatc cttgaaagcg
     7321 gagtttctct tggcacaatg attagttttc gtgactcttt taaggtaaca gatgccgcac
     7381 gagaaataag cgtatcatcg taaccatttg caatgcttga aagtgatttc atgctacatg
     7441 gtactatgac catcccatca tgaaggaaag aaccgcttga tacggaggcg tctaatttga
     7501 aattatcgta gttaacggaa gaaagagatt taacgtattc taaagttttg tcggtttcaa
     7561 tttctatatt tttttttgcc cattcactga taatgaggta tgtttgaatg ttaatagagt
     7621 gtagaatctc caaaagccta attccgtaaa taatacctga tgcaccagaa aacccaatca
     7681 ctattttatc atgttttgtc tcggatgtca atatgcaaaa tattgttgaa cacttattta
     7741 ttgttgttat taatcgaact gcatgctaac gatattcgga accattgcat tagatactac
     7801 acggacgccc tttcatactg ttgaaagaac gttgggcggc acagctacat ttgcttcaat
     7861 ctcagcttcg aattacgtgc ccacatcact tcttgggata gtaggttatg attttcctgc
     7921 agcatattta gagcttttaa aaaaccgtct tgatatcaga gggttaacca ttagtcaaac
     7981 cgaaaaaacc ttccattatg attcttcttt tgcctatgat cttgcaaaga gaacaactaa
     8041 caaaactgaa cttaatgtaa ttgcaaatta ccaatcaact ataccggatg attatattga
     8101 ttctgagtat gtttaccttg caaataatga tccagtacaa aatatgaata tactgaaatt
     8161 attttccggc ccaaagttag taatttgtga cacaatggat ttttggatta ttaataaaag
     8221 ggacgatgtg attaagatga taaagaaagt tgatggaata atgttaaatg aatcagaggc
     8281 caaattgttg tttaaggaga acaatatttt gaaatgtgca cgcttgcttg tattaaatgg
     8341 acctgctttc gcagtaataa ataagggaga aaatggatca ct
//
LOCUS       DASUMD010000232         3939 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1194593, whole genome shotgun sequence.
ACCESSION   DASUMD010000232 DASUMD010000000
VERSION     DASUMD010000232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3939)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3939)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3939
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1194593"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(376..960)
                     /locus_tag="VFX26_06325"
     CDS             complement(376..960)
                     /locus_tag="VFX26_06325"
                     /inference="COORDINATES: protein motif:HMM:NF012383.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase family protein"
                     /protein_id="HEX5574129.1"
                     /translation="MDLTIEDKHERLKYIIKERGIVIRDVTLSSNRKSKFYYDIKSIV
                     SEPEGAALIGELMLARILKIEPKTMSVGGLESGAIAIATAIVCSSYLLTPASTVSGFF
                     VRKNVRTYGLEKMIEGLVKDPIAVVDDVITTGKSVLDAVAALRNQGFSNINIVSVIDR
                     ESKENLLDQNNLQFHSLFKHSEFAEYIDSRLAES"
     gene            1159..2019
                     /locus_tag="VFX26_06330"
     CDS             1159..2019
                     /locus_tag="VFX26_06330"
                     /inference="COORDINATES: protein motif:HMM:NF024762.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase-like domain-containing protein"
                     /protein_id="HEX5574130.1"
                     /translation="MAKNIPAALSDWQTNVVSQMALNDPSKLAEYALHISRIVAYSNL
                     VIQDELAKIDEIGKKIAKSMKSSSEFRPTQFIEKINHQLYKIENFKGNRDDYYNPSNS
                     LLNTVIKRKTGNPITLSILYIQLANSLKFKLYPVNFPSHFMVKHVLDDEENEIIIDPF
                     NEGRIMDDYSLKELLDHFYPKMNIALTRKLVDKASNPDVIIRMLNNLKTSFFECQDFD
                     SADLVNEMILGINRDDQHSLRDKGMVFLHKKRYEQALKYFNLYLEKFPEANDVDTILE
                     LIRKIKTSDL"
     gene            2087..2467
                     /locus_tag="VFX26_06335"
     CDS             2087..2467
                     /locus_tag="VFX26_06335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574131.1"
                     /translation="MAENSESLNSALHEGSRKIVVCKNDIDLSKKTENTIFILFVEES
                     QGSAGGRIGGAGFRRIGRISCFNVANGTAQKVFETENENAISNFEIPLSAVALDIKLS
                     NGASKVIQGIVDEDLVNNYLNLIH"
     gene            2670..3467
                     /gene="murI"
                     /locus_tag="VFX26_06340"
     CDS             2670..3467
                     /gene="murI"
                     /locus_tag="VFX26_06340"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR00067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008881 - glutamate racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HEX5574132.1"
                     /translation="MITHDRSIAVFDSGLGSLSVIRGIRSEISKENIIYFADRKNFPY
                     GEKSVDDLEQIMKETIAILSSFSPKIIVVASITPSIQMLTRIRSMTPIPVVGVNIPLK
                     EASKTTKKKHIGILGTKATINSKHLDEHIKSDVPQDIFVTKFDASEIIEIVEKGIFLK
                     DNEYTHDTISRTLEGLKGTNLDVLVLSSTHLSFVRSNIISMYPSIKVIDPALNAVRDI
                     RQFLKTNNNLRKSGQGRISIIVNGDKNEFQELLKEMGLPGPVEHYEK"
     gene            3553..>3939
                     /locus_tag="VFX26_06345"
     CDS             3553..>3939
                     /locus_tag="VFX26_06345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCMP deaminase family protein"
                     /protein_id="HEX5574133.1"
                     /translation="MINRPNWDTYFMLQAEIAKLRSNCLSRQVGCVIVKDNRQISTGY
                     NGTPSGIKNCFDGGCPRCLDKQNNKIKSGENLERCFCTHAEANAIMQCALFRTGSTKG
                     STLYSTFAPCLECSKMAISVGIGRIVI"
BASE COUNT         1394 a          649 c          700 g         1196 t
ORIGIN      
        1 aggagattga tggaatattc tgaggttaca ggactgtaca gaactgcaga agcaggatta
       61 atcttcataa agaaacatga agaaatgtgc cgtattttcc cagcaatatc tgacttaccc
      121 gaagtatcgc ataatagtta cataataaaa gaatcattga atgaataaat gaaatcattt
      181 atgatctcat caggttgcaa taataatttt attactttta caaataatga cgtgcttgca
      241 aactacactg agaatcaatg agatcaaatt agtttagtaa aagcaatttt cattcttttc
      301 taatagatgg taatcaaatc agaatacctt aacgttacct aacaaagcaa gataacttta
      361 cgttagttta tcatttcaac tttcagccaa tcttgagtca atatattctg caaattcaga
      421 atgcttaaac aatgagtgaa attgtaagtt gttttggtca agcaagtttt ctttcgattc
      481 cctatcaatt acactgacaa tattgatgtt gctaaatcct tgattacgca gtgcagctac
      541 cgcatcaaga acactctttc cggttgtaat tacatcatca acaactgcta ttgggtcctt
      601 cactaatcct tcgatcattt tttcaaggcc atatgttctg acattttttc tgacaaaaaa
      661 accagaaacc gtgcttgctg gtgttaacag ataactagaa catactatgg cggtagcaat
      721 agcaattgct ccagattcta gccctcctac tgacattgtc ttgggttcaa tctttaatat
      781 gcgggcaagc atcaactcac caataagagc agcaccttca ggctcgctca caatcgactt
      841 gatatcatag tagaatttgc tttttctgtt gctagataga gttacatccc ttattacaat
      901 acctctttcc tttatgatat atttgagtcg ctcgtgttta tcttcaatag tcaaatccaa
      961 aatctgattg cctccacatc tagtatattt ttattaataa aaagctaacc gtacattatc
     1021 caaaacttaa aattctaaca tttaatctct ctcaagaatt ccgaacaaaa tcaacttcac
     1081 aaatattctt attccggact ttattttctc gggttcatca aaattatata ttcaaggaac
     1141 aaataattca gatgattaat ggctaaaaat atcccggcag cactgagtga ttggcaaaca
     1201 aatgttgtga gtcaaatggc actaaatgat ccatcaaaat tagcagaata tgctttacac
     1261 atttcacgca tagtggcata cagtaatttg gtaattcaag acgagttggc aaaaattgat
     1321 gaaattggta aaaagatcgc aaagtcaatg aaaagttcat cggaattcag acccactcaa
     1381 tttatagaaa aaataaatca tcaattgtac aagattgaaa attttaaggg gaatagagat
     1441 gattattaca atccttcaaa cagtttgctc aatacggtaa taaagagaaa aacaggaaat
     1501 cccataacac tatcaatatt atatatacaa ttggccaatt cgctaaagtt taaactttat
     1561 cctgtgaatt ttccatccca ctttatggta aaacatgttt tagatgatga agaaaatgaa
     1621 ataataatag atccatttaa tgaaggaaga ataatggatg attactctct aaaagaacta
     1681 ttggaccatt tttatccaaa aatgaatatt gcattgacca gaaaactggt tgataaggct
     1741 tcaaatcctg acgttattat tagaatgttg aacaatctta aaacgagctt ttttgaatgt
     1801 caggactttg acagtgccga tcttgtaaac gaaatgatat tgggtatcaa tagggacgat
     1861 caacatagct taagagacaa aggaatggta tttcttcaca aaaagagata cgagcaggcg
     1921 ctcaagtatt ttaatttata cctcgaaaag tttccagaag ccaatgatgt tgacactatt
     1981 ttggaattaa taagaaaaat caaaacgagt gacttgtgac ctgtgtttga aattcagatt
     2041 ccatcaaaag tgatatattt ctgtatttgt gatcgtttga attgccatgg cagaaaactc
     2101 agaatcatta aattcagcat tacatgaggg ttcgagaaaa atcgtagtat gtaaaaacga
     2161 tattgacttg agtaaaaaaa cggagaacac tatattcata ctctttgttg aggagtcaca
     2221 aggctctgca gggggtagga taggaggagc gggatttaga agaataggta gaatttcttg
     2281 ttttaatgta gctaatggca ctgcacaaaa agtatttgaa actgaaaatg aaaatgctat
     2341 atcaaacttt gaaataccat tgagtgctgt ggctctggat attaaattgt caaacggagc
     2401 ttcgaaagtg atccaaggta ttgtagatga agacctagta aacaattatc tcaacttgat
     2461 acactagata gtaaattaga gtaaatattg ctatcaggac agccgacaaa gttcacaata
     2521 tccgaatgtt tcgttcatat aattatgtaa aaataacttt tattcacttc ctagcgacat
     2581 gaattaattt gtcaatctga tgcttttggt tgcttgaata acccgattaa tgatgatata
     2641 aattgggttt gcagttaata aaatgaaact tgataacaca tgataggtcg atagcggtat
     2701 ttgattctgg actaggatca ttatctgtga ttagaggcat acggagcgag atttctaagg
     2761 aaaatattat ctattttgct gacaggaaaa attttcctta cggggaaaaa tcagtcgatg
     2821 atcttgaaca aataatgaaa gagacaatcg ctatcctatc gagtttttct ccaaaaataa
     2881 ttgttgttgc ttcaattact ccatcgattc aaatgttgac caggataaga tccatgacgc
     2941 ctattccagt cgtaggtgtg aatatcccat taaaagaagc ttctaagact acaaaaaaga
     3001 aacatatcgg cattctgggc acgaaagcaa ctataaatag caagcatctt gatgaacaca
     3061 tcaaatcaga tgtgcctcaa gatatctttg ttactaaatt tgatgcctca gagataatag
     3121 agatcgtaga gaagggtatt tttctaaagg ataatgaata tacacatgat accatatcga
     3181 ggacccttga aggattgaaa ggtacaaact tagatgtctt ggtgttatca agtacccact
     3241 tgtcattcgt tagatcaaat attatttcga tgtatccttc aataaaggtc attgatcctg
     3301 ctcttaacgc tgtaagagat atcagacaat ttttgaaaac taataataat ttgagaaaaa
     3361 gcggccaggg cagaataagt attattgtca atggagataa gaacgaattc caagaattac
     3421 tcaaagaaat gggattgcct ggacctgttg aacattatga aaaataactg ctccagttgt
     3481 aaatgcatta gaattgtttt ccaatttcaa gaatcgatta tgttaaataa tcacagatgt
     3541 tctctttaga agatgataaa cagaccgaat tgggatacat attttatgct tcaagctgaa
     3601 atagcaaaat tacgatcaaa ttgtttgagt cgccaagttg gttgtgtaat tgttaaagac
     3661 aacagacaga tctctacagg ttataatggg actccttcgg gaatcaaaaa ctgctttgat
     3721 ggtggttgtc caagatgcct ggacaaacag aataacaaga taaagtctgg ggaaaatctg
     3781 gaaagatgtt tttgcactca tgcggaagca aacgcaataa tgcaatgcgc cctatttaga
     3841 actggaagta ccaagggttc tacattatac tcaacttttg cgccatgcct cgaatgcagc
     3901 aaaatggcaa ttagcgttgg aatcggaagg atagtcatc
//
LOCUS       DASUMD010000233         3571 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_199496, whole genome shotgun sequence.
ACCESSION   DASUMD010000233 DASUMD010000000
VERSION     DASUMD010000233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3571)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3571)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3571
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_199496"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..491
                     /locus_tag="VFX26_06350"
     CDS             <1..491
                     /locus_tag="VFX26_06350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acetoin utilization protein AcuC"
                     /protein_id="HEX5574134.1"
                     /translation="YVDIDAHHGDGVFYEFEDDPDILIADIHEDGSFLYPGTGFESET
                     GLGGAKGTKLNLPLRPGATDGDFLSAFTKIENFTESMKFELIIFQCGADGLSGDPLTH
                     LKYTDKSHEYAARVLHRIAHEKSSGRIIGLGGGGYNVQNVANAWNKVVEVFVSDDSMM
                     KL"
     gene            624..1133
                     /locus_tag="VFX26_06355"
     CDS             624..1133
                     /locus_tag="VFX26_06355"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574135.1"
                     /translation="MSNLKKYMILLVLGVSIFILYPPTVVTISFAQNNERVVISVSNS
                     SFVPLTNTDANQVRVGVEYTIEDESIENEMINAVMKVYAPNGSLIRTTSIPSGFTPQS
                     NGGVEELKTTFHDKSMQSILANITFTDVTKRTPISNVLTVNLDLEEAPISAGAPTPTP
                     TSNTSSLEN"
     gene            1445..1627
                     /locus_tag="VFX26_06360"
     CDS             1445..1627
                     /locus_tag="VFX26_06360"
                     /inference="COORDINATES: protein motif:HMM:NF018096.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1059 domain-containing protein"
                     /protein_id="HEX5574136.1"
                     /translation="MLSVSCREVGVDCDFVGKGESEKELMDNLIEHAIKDHGYTREDV
                     LKPEMQEKIKAHIHQS"
     gene            complement(1805..2182)
                     /locus_tag="VFX26_06365"
     CDS             complement(1805..2182)
                     /locus_tag="VFX26_06365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574137.1"
                     /translation="MRENFSLLRYGAAGSTLIAGILHLSLVANIIDRNFNTGILFLIG
                     GLAQVFWVLPTAMGWSRAWYYVGIGGTLIFIIIWVVTRFPGNPINGRGGSIGETAIAI
                     EVFQVAFIVLSIIVLSRDPKVRK"
     gene            2658..3530
                     /locus_tag="VFX26_06370"
     CDS             2658..3530
                     /locus_tag="VFX26_06370"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HEX5574138.1"
                     /translation="MNKIYSGIFFLVILLGSGIVSGTFVKLVEAQSSNTVTNVTDLTR
                     LDANAGVDLQNKTVNYYDQANGYLVYPSESNENKSGNNNGTLPAVVMIHENKGLNDHI
                     KNMANLLARNGYVVLAVDLFKGEVTTDRNRSSELTQYIRDNPDIATANLQSAVKYLAS
                     LPNVNAEKIASLGWCFGGAQSLQLALNSQDHPLSATIIYYGRLITDNATLAKIKWPVL
                     GIFGDQDSSIPVDTVKAFESALNSNNIPNEIYIFKGVGHAFANPSGDNYAPTETKDAW
                     DKTLSFLDKHLRSM"
BASE COUNT         1195 a          628 c          636 g         1112 t
ORIGIN      
        1 tgtatgttga tatcgatgcc catcatggag atggagtatt ttacgaattt gaagacgatc
       61 ctgatatact catagctgat attcatgaag atggttcttt cttatatcct ggaactggtt
      121 ttgaatcaga aaccggctta ggaggtgcta aaggcaccaa gttaaatttg cctctacgtc
      181 cgggtgcaac tgatggtgat tttttgtcag catttacgaa aatcgaaaat tttactgaat
      241 ctatgaaatt tgaactcatc attttccaat gtggagcgga cggtttatca ggagacccat
      301 taacccattt gaaatacact gataaatcac acgaatatgc tgctcgagta ctgcacagga
      361 ttgctcatga aaaatcaagt ggaagaatta tcggtctcgg tggaggaggt tataatgtac
      421 agaacgtagc taacgcttgg aataaggtgg tagaagtttt tgtctctgat gattcaatga
      481 tgaaattatg aaacctgtat agcgtacagt gcatttaacc agatcaccag tcgctaatta
      541 aaattaattt tcaaattcaa acataccaat aagaaagatt ttttatttag taaggctaaa
      601 tgaataacgg ctgaataatt actatgtcca atttaaaaaa atatatgata ttgttagtct
      661 tgggtgtctc tatatttatt ttatatccac caacagttgt tacaatatca ttcgcacaga
      721 ataacgagag agtagttatt tctgtgtcca attcaagctt tgtgccccta acaaatactg
      781 acgctaatca agtcagagta ggtgtagagt atactattga ggatgaatca atcgaaaatg
      841 aaatgataaa tgcagtgatg aaggtgtacg ctccaaatgg atcattaata cggactactt
      901 ctattccaag cgggtttact cctcaaagta atggtggcgt agaagaacta aagacaacat
      961 ttcatgacaa gtccatgcag agtatattgg caaacataac gttcaccgac gtgactaaga
     1021 gaacaccaat atcaaatgta ctcaccgtga accttgatct tgaagaggct cctataagtg
     1081 caggtgcgcc tacaccaaca cctacatcta atacatcgtc tctagagaat taagaatgtt
     1141 aaagttgttt gattgaggcg atattctctc ttttactctc aactagaaac aaattacggc
     1201 gcgcaacatt atttccatgt tggtaaataa acaacaagca atttcaagcc aaacaaatga
     1261 ttttcatcaa ccaaaagcac ttcatgttat ataacaactt tatgcggaaa atcatatttt
     1321 gttgcatttc tgataaggaa tatcatgaat acaacgcacg tcaaacgaat accaattctc
     1381 taacatggaa actagataag taattgttat tatacttaaa tactatttct ccctataatt
     1441 ttccatgcta tcggtatcat gtagagaagt tggagtagac tgtgattttg taggaaaagg
     1501 tgaatcagag aaagaattga tggataactt aattgagcat gcaatcaaag atcacggata
     1561 cacacgcgag gacgtactca aacctgagat gcaggaaaaa atcaaggccc atattcatca
     1621 atcataagat aatatagttc gtcactactc atggtaatta tgctataatg ctgttattgt
     1681 tactgtgaag tgaaactatg atatctctta cccatttgct ggtatcgttc aggatattcg
     1741 tatcgattaa tgaataaccg ttgggtcctg gctattcatt ctagtactta tcatgaatgc
     1801 ttgcttattt ccttaccttt ggatctctgg ataagacaat tatgctcaac acaataaatg
     1861 ctacctgaaa tacttctatt gcaattgctg tctcgccaat ggagcctcct cgaccgttaa
     1921 taggattgcc tggaaatctt gtaacaaccc aaataatgat gaatatcaga gttcctccaa
     1981 tacctacata ataccaggct ctactccaac ccatagcagt aggaagaacc caaaatacct
     2041 gagctaatcc gccgatcaag aataatatac ccgtgttaaa atttctatca attatgtttg
     2101 caaccaatga gagatgcaaa attcctgcaa taagtgtact tccagcagct ccgtatctta
     2161 atagactaaa attttctctc atatcagtat tgcatttgtt tatcgcgtta taaaagagaa
     2221 tcggtcctca attcccaata agagcagtaa gtctgtataa tgagtataaa tccatccgat
     2281 tttgttataa ttgttaccta gcaagataac taattcttta ttgcaatttt ttttaatatc
     2341 aagattttgt agttgatgtc tcacttcaaa tatattcgat cgtatttaga tcctagagtt
     2401 gcttctgaaa ttttatgctt tttgtcaatt agacacataa tgataaagca aaaatttagt
     2461 ctggtgttac tttaatttaa tgttgtttat tcatataatt ttgtgataga tataatttca
     2521 ttttgatcca ttttttacct atatcgtgaa ttcttacaag aaaatgagat tattacaagt
     2581 aaagatagct tggctttacc tacaaggtgt aataagcttg cataaaaaat ataaataata
     2641 tcttgtatta tcatgtgttg aacaaaatat attctggaat ttttttcctg gttatcctac
     2701 ttggttcagg aatagtatca ggcacttttg tgaaattagt agaggctcaa tcttctaaca
     2761 cagtaacgaa tgttacggat cttactagat tagatgctaa tgctggtgtt gatttacaaa
     2821 ataaaactgt aaactattat gatcaagcaa atggatatct agtgtatcct agcgaatcaa
     2881 acgagaacaa gagtgggaat aacaacggca cacttcctgc agttgttatg atacatgaaa
     2941 ataagggact caatgaccat atcaagaata tggcaaatct tttagctaga aatggctatg
     3001 tggtattagc tgtcgatttg tttaaaggcg aggttaccac tgatcgaaac cgttcatcgg
     3061 aactaactca atatatcaga gataatccag atattgcaac cgctaatcta caatctgctg
     3121 taaagtacct tgcttcactt ccaaatgtta atgcagagaa aatagcatca ttagggtggt
     3181 gttttggagg agcacagtca ttacagcttg ccctaaacag tcaggatcat cccctctcag
     3241 ctactatcat atattatggt cgactgataa cagacaatgc aacgcttgca aagataaaat
     3301 ggccagtact cggtatattt ggagatcaag atagctctat accggttgat actgtgaagg
     3361 catttgaatc agcattaaat tccaacaaca taccaaatga gatatacata ttcaaaggag
     3421 ttggtcacgc atttgcaaac ccctccggtg ataattatgc tcccacggaa actaaagatg
     3481 catgggacaa gacattgtca tttcttgata agcacctgag aagtatgtga gtataatcat
     3541 atggtaacat ctttgattat aaggtgatac a
//
LOCUS       DASUMD010000234         3537 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_976272, whole genome shotgun sequence.
ACCESSION   DASUMD010000234 DASUMD010000000
VERSION     DASUMD010000234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3537)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3537)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3537
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_976272"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..697)
                     /locus_tag="VFX26_06375"
     CDS             complement(<1..697)
                     /locus_tag="VFX26_06375"
                     /inference="COORDINATES: protein motif:HMM:NF016593.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HEX5574139.1"
                     /translation="MLNDFISSSHDFTLNKKKINTERDPFEIFKQIYMSYDNAFILES
                     LTGPKELSEFSVIGFDPEFTIKCDRGRFQIYRNEKIISEKKVKDPLLELRRIMPTINE
                     KKLRYMGGAVGYVSYDAIKFWEKLPTKRANNMFPLMEFGVYTDGLIHDIRDKATYYFH
                     IGKKSRLTEIEKILNSKKQYLAKSFSFSKPVSETTKNKFISKVKKAKEYVYEGEVFQV
                     VISRKFNFRIHGDP"
     gene            1148..2479
                     /locus_tag="VFX26_06380"
     CDS             1148..2479
                     /locus_tag="VFX26_06380"
                     /inference="COORDINATES: protein motif:HMM:NF019351.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase family protein"
                     /protein_id="HEX5574140.1"
                     /translation="MNFSETSEAYSHEGILETTVIVDEHEGIVGNESVKAITYNGSVN
                     GPTLHVKPGERMVLYYVNKLDQPTNIHFHGLHVSPLGSSDNIFRVIGPGETAKYVLDI
                     PIDHARGTFWYHSHLHGLATDQVSGGLSGLLVIEGLEDLLPDVLRNITQQTFIMRGFP
                     WHYWHLNYTSPTYQTINGEINPVVSISPGETQLWRFANIDPGTFYNITLPGHTFRVIE
                     QDGSPVWEAWDTNYLVIAAGKRFSVLVTGGENGTYPLKMLPYKGGTTHPYPEVNLATI
                     NVQGNAGAGTAEVNELSLVPMHDLGDLGVHEIRELVYSASESNTTMNRFGEQGTNMIN
                     GKVFDHNRVDQTVNLGNLEEWHIKNIDGDDHTFHIHINDFQVMSVNGQPYEAHGLQDT
                     VILPANGEVVVRIPFEDFVGRFVYHCHILPHEDTGMMGTVEVVDPFTPPFN"
     gene            complement(2742..3143)
                     /locus_tag="VFX26_06385"
     CDS             complement(2742..3143)
                     /locus_tag="VFX26_06385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2203 domain-containing protein"
                     /protein_id="HEX5574141.1"
                     /translation="MSIYFTPQDANRILPEVKKLFSSIIIQKNKVIKLQEELQRMVNA
                     GTKFTNFITKKQELNKAVFRLYESIAELENKGVMIKSVDEGLLDFPSLRFDEEVWLCW
                     KEGENEIKFWHRKDEGFMGRKPLATTNVIDR"
     gene            complement(3210..>3537)
                     /locus_tag="VFX26_06390"
     CDS             complement(3210..>3537)
                     /locus_tag="VFX26_06390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574142.1"
                     /translation="LRLRGSMGRRGLMFVSYYGKSKAFISNYRSWREYDSVGKTAEVA
                     SSIISHESIHLALNKFSVNASDKLDNLFGRSNSWEIYPHGLGDLNKVRKEKRKKRKIR
                     PISENL"
BASE COUNT         1055 a          681 c          646 g         1155 t
ORIGIN      
        1 taggatctcc atggatccta aaattgaact ttcttgatat tactacctga aagacctcgc
       61 cttcatatac gtattccttt gctttcttca ctttagaaat aaatttgttt ttagttgttt
      121 ctgaaactgg ttttgaaaaa gagaaagatt ttgccaagta ttgttttttg gaatttaata
      181 ttttttctat ttcagtaagt ctggattttt taccaatatg aaaataataa gttgccttat
      241 ctcttatgtc atgaatcaaa ccatcagtat agactccgaa ttccatcaag gggaacatat
      301 tgttagctct ttttgttggt aacttttccc aaaatttgat tgcatcatag ctgacgtacc
      361 ccacagcgcc ccccatatac cggagttttt tttcgttaat tgttggcatg attcttctta
      421 attccaaaag tggatccttt actttttttt cggatatgat tttctcattc cgataaattt
      481 gaaatcttcc tctatcacac ttgatagtaa attcggggtc aaaacctatt actgaaaatt
      541 ctgaaagttc ctttggtccg gttaaagatt ctaaaatgaa tgcattatca taactcatgt
      601 aaatttgctt aaaaatctca aatggatccc tctcagtatt aatttttttc ttattcagcg
      661 taaagtcatg ggaacttgaa ataaagtcat taagcattta ttatggttac cataaaaagg
      721 tgttttaaaa catgatttaa tcctttatat tcggatttaa aacaatagag ttaacaaatc
      781 aaaattttgt attgtcaata tacaaaccaa ataatattaa tgtttatgaa aagcaaacaa
      841 gatgataaat aaaatctgtt aatgcctagt agagtcagat gtgcaaagtt aaatctttaa
      901 ttgctttttc accttctgtt attttaaaga gaaacagttg cgcttagaca gtagacttaa
      961 gtactatctc ataattttat ggattatggt tctagggtca cgtgaatttg tattcattac
     1021 tctgtctatg ttagctgtga cagtcattat tacaggccaa gatgctctcg gcagcagtgc
     1081 atccaatgcc ttcgatcgga acctgactgg taatgacggt cagggacagt catcacccct
     1141 taaagagatg aatttctctg agactagtga ggcgtacagc catgaaggaa tcttggaaac
     1201 gacagttatc gttgatgagc atgaaggtat cgttggaaac gaatcagtca aagcgataac
     1261 ctataacggc tcggttaatg gtccaacgct acacgtgaag cctggcgaac ggatggtcct
     1321 atactatgtc aacaagctcg atcaacctac taacatacac tttcacgggt tacatgtgtc
     1381 accattagga agctcggaca atatctttcg tgtaattgga ccaggagaaa ctgcaaagta
     1441 cgtgctggat attccgatcg atcatgcaag aggaactttt tggtatcatt cgcacctgca
     1501 tggtctcgct actgatcaag taagtggtgg gttatctggt ttgctcgtga tagaaggttt
     1561 agaggacttg ctacctgatg tgttgcgcaa tatcactcag cagacgttta tcatgagggg
     1621 ttttccatgg cattattggc accttaacta tacttcccca acatatcaga ctataaatgg
     1681 agagataaat cctgttgtaa gtatttcacc aggtgagact caactatggc gatttgcgaa
     1741 tattgatccc ggaacgtttt acaatataac actaccaggt catactttcc gtgtcatcga
     1801 acaagatggt agccctgttt gggaggcctg ggatacaaat taccttgtga ttgccgctgg
     1861 taagcgattc tccgtgctgg ttactggcgg agaaaatgga acttatcctc ttaaaatgct
     1921 cccgtacaag gggggtacta cgcacccata tcctgaggta aacctagcaa cgataaacgt
     1981 gcaaggcaat gctggagctg ggacagcaga agtcaatgaa ttgagtctag taccaatgca
     2041 tgacctagga gatctagggg tccacgaaat acgtgagtta gtctactctg cgtccgagtc
     2101 caacacaaca atgaaccgct ttggcgaaca gggaactaac atgatcaatg gcaaggtttt
     2161 tgatcataac cgggtcgacc aaacagtgaa cttaggaaac ctagaggaat ggcacattaa
     2221 aaatatcgat ggcgatgatc atacatttca cattcacatc aatgacttcc aagtaatgtc
     2281 ggtgaatggt caaccttatg aggcacatgg cttgcaggac actgtgatcc ttccggcgaa
     2341 tggtgaagtg gtagtccgta tcccatttga ggatttcgtt ggaagattcg tctatcattg
     2401 ccacattctt ccacatgagg acactggtat gatgggtacc gttgaggtgg tcgatccatt
     2461 cacaccaccg ttcaattgac accactttac attacatgtc tggaatgcat ctgcgttact
     2521 attactagat aacaatcaca aagaggccta gcgttttgag attgtacaca ttaatatcat
     2581 tgtttaaaat attgatttaa attttatgag agggtattac aattcaagtg aatattttat
     2641 ttgcttatct accgaagatc agatattaaa ctcaaaaaat ccttttatta gtttatccga
     2701 ttgataacat attaatcgtg gataagaatt gattctaatt gctaacgatc aattacgtta
     2761 gtagttgcta acggttttct tcccataaat ccttcatctt ttctgtgcca aaattttatt
     2821 tcattctcac cttctttcca gcaaagccat acttcttcat caaaccttaa agacggaaaa
     2881 tctaagagac cctcgtcaac actcttgatc ataactcctt tattttccaa ttctgctatt
     2941 gattcataca atctaaatac ggctttgttt agctcctgtt tcttagttat gaaattggta
     3001 aatttcgttc cagcgttaac catccgttgt aattcttctt gaagcttgat taccttattt
     3061 ttttgaataa taatgctaga aaatagtttt tttacttcag gtaagattct attggcatct
     3121 tgtggagtaa agtaaatcga catacattcc aaaatttaca gcagccaatt taatcattat
     3181 tattcgcctc catctgttat tcggtagtgt cacaaatttt cagaaatggg tcggattttc
     3241 ctttttttgc gtttttcctt tctgacttta ttcaaatcac ctagtccatg tggataaatt
     3301 tcccatgaat tagatcttcc gaatagatta tctaacttgt cagaagcatt tacagaaaat
     3361 ttattcaatg caagatgaat tgattcgtgg cttataattg aggaagcgac ctcggccgtc
     3421 ttaccgactg aatcatattc tctccaggac cgataatttg atataaaagc cttagatttg
     3481 ccatagtaag atacaaacat taatcccctc cttcccatcg atccacgcaa acgaaga
//
LOCUS       DASUMD010000235         5667 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_424576, whole genome shotgun sequence.
ACCESSION   DASUMD010000235 DASUMD010000000
VERSION     DASUMD010000235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5667)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5667)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5667
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_424576"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..806)
                     /locus_tag="VFX26_06395"
     CDS             complement(<1..806)
                     /locus_tag="VFX26_06395"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012745.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family A protein"
                     /protein_id="HEX5574143.1"
                     /translation="MGTYSAIMTCRNSEKDIRAAILSLTNQSIKPDYVIVIDDGSTDN
                     TPAILKEINSRNRNVYVITNPDLGYDIGRVVFNWNKAIKLAKELNLPQTDYHMISSDD
                     AQYEFRYAEKIMKYMDSDPLIAIASGDYNNDTSSKPRGSGRFIRNSFFFSVQGYYPER
                     IGYESAILYTALKNRLKYLVIHEARYLHTRQLGANHHFYEFGAGMKTMGYHPLYAFSR
                     FVKYFLLGKPMGRLGSIRMFYYYLSYKPKDEGYDSMYDSEFRKFVRVIQL"
     gene            1271..2413
                     /locus_tag="VFX26_06400"
     CDS             1271..2413
                     /locus_tag="VFX26_06400"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX5574144.1"
                     /translation="MSRLKILHLNDGDLDDPRIVNSAITGKKAGYDVFFCGTNKSVPL
                     NTDAFKEILKIDFVRKAKFAKPLASFLNYWPWYPYPREARILERQLKSVISQIRPDLI
                     HAHNIFAGRYASSLGIPMVLDDHELYSVEVRAEYDKATGVKTKVKAKLKGKQWAAFEH
                     KLGRKHPIITVSEGIADHHRQYCQNVFVVPNYPRLNEMKSTNLTKATNGKVQSVYLGR
                     DPVLNPSSFRDISHLHAIFSDRKHVGNLARIGVAGPTTPTIKSFGLVRMVDAYRIMQE
                     QCHIGLVPWRRHWFHKYCVPNKVYEYAHCGLWLITIDDLHPVINDFGSLCDTFGNYQE
                     LSSLLEYYNTHTDELNEKRLRSLKHAQTNLVWEKVEHKILEAYRTA"
     gene            2690..3727
                     /gene="wecB"
                     /locus_tag="VFX26_06405"
     CDS             2690..3727
                     /gene="wecB"
                     /locus_tag="VFX26_06405"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: protein motif:HMM:TIGR00236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008761 - UDP-N-acetylglucosamine
                     2-epimerase activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HEX5574145.1"
                     /translation="MKKKNCNVTICHTGQHYDKEMSDIFLEQLQIPSPKYNLHSGAGS
                     HAQQTARIITRSENALIRDNPDLVIVEGDTTTAFASSLAAAKLKVPIAHIEAGCRSFD
                     KTLPEEINRVVISHVANLHFPPTPNCARNLLREGVDKKVINLAGHPIVDAIDLVRKKL
                     KEITLLGKTKINPHEYYFVTLHRDFNVDDPSRLEYILRELDKVSNVRTVVFAIHPRTR
                     KRIHEFGLTRFLGNIIKLKPVDYITSLSLIRHAYAIISDSGGLTKESCILGVPSVTLR
                     PNTEWIETIGGYSNQLAFSKGNTLMTCVNRLERNYELAKKNLKLSQDIFGAVGVSSKI
                     ADQIMTSILSN"
     gene            3987..5066
                     /gene="wecB"
                     /locus_tag="VFX26_06410"
     CDS             3987..5066
                     /gene="wecB"
                     /locus_tag="VFX26_06410"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: protein motif:HMM:TIGR00236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008761 - UDP-N-acetylglucosamine
                     2-epimerase activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HEX5574146.1"
                     /translation="MKVASIVGARPNFVKLGPVHKSLKSSGIKHLIIHTGQHYDYEMS
                     DIFFSDFELPKPNIHLGIGSGSSCFQLGEIIKRLENKLIDKQIDLVLVYGDTNSTLAG
                     AICANKCNIKLGHIEAGLRSYDPSMPEEYNRILTDHLSNYLFAPTRNAVNNLKKEKII
                     GKVYYTGDLSVEIIDKTRSISKKSEILDILDVKSKSFLLLTMHRAENTSSRYFFIQLL
                     ETFEALKHHVIVFPIHPRTKKMFKSFGLLDRLLKCSNVKTLLPVGYIDFIALLQNSLK
                     VITDSGGVQKEAYLLNVPCITMRKNTEWVETIGQWNVLTGVDSKKIVNAVRRQTPNSK
                     YSESAFGKGRTSQVISKLVSSMISH"
     gene            5369..>5667
                     /locus_tag="VFX26_06415"
     CDS             5369..>5667
                     /locus_tag="VFX26_06415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574147.1"
                     /translation="MYLIVITTTTILLLFSLFSLQGAIGLETFRGLSFSIEVPDTWAY
                     TETPETPIERVLGVSSYTSVVLVPVQFAELLIEEKGDITMGNGSAAVVFAKASDYS"
BASE COUNT         1873 a         1023 c         1074 g         1697 t
ORIGIN      
        1 ttaagttgga taactcttac aaattttcga aactcggaat catacatact atcataccct
       61 tcatcctttg gtttgtaaga taagtagtaa taaaacatac gtatagaacc caatcttccc
      121 atcggttttc ctaacaagaa atacttcaca aatctggaaa atgcataaag ggggtgatag
      181 cccatcgtct tcatgccagc accaaattca taaaaatggt gattagctcc taattgtctt
      241 gtatgtaggt aacgtgcttc atggattact aaatatttta ggcgattctt taatgcggtg
      301 tataagatcg ctgactcgta gccaatcctt tcaggataat agccttggac tgagaagaag
      361 aaggagtttc taataaaacg accactaccc cgaggtttac tcgaagtgtc attattatag
      421 tcgccagacg caatggctat taagggatcg gagtccatgt acttcataat tttttcagca
      481 tatcgaaatt catattgtgc gtcgtcactg ctaatcatat gataatctgt ttgtggcaga
      541 ttcaactcct tcgctagttt aatcgcttta ttccagttaa aaacgactct tccaatatca
      601 tatcctaaat ctgggttagt tataacgtaa acatttctat ttcttgagtt aatttctttt
      661 aaaatagcag gggtattatc tgtggaaccg tcatctatca caataacata atctggcttg
      721 atgctttgat tggttaagga tagaatggct gctctgatat ccttttcgga atttctgcat
      781 gtcattatag cgctgtaagt gcccaaattt ctgattccaa agtattaatc tacttgtact
      841 aatctaaatg ctttctcaag tattgttcaa aactgcaatt gactcgaatc tggtaaattc
      901 tcgactatat tttctcacta ttgtaatgag acatttgaca atcaagctca ggcagtaaag
      961 tgaaacgcac tgacacacaa tagaataaaa aagagtgcat aaaaataaat ttgaaattct
     1021 agctaccgaa gctgccccag aagtcaagag atatgaacct gattgttgta ttccttttgc
     1081 aaaaggatga gaaaaatatt tcacctcatg tcgaaataaa agtagacggt atagattgac
     1141 gactcaaaat tagggatttt gttacgcaca tataatcacg attcgtcttt aggtatttaa
     1201 ttttctagtt agaaagatca acaagcgaag taagaattaa gatacggata attgtattgt
     1261 cattagattc ttgagtaggc tcaaaattct ccacctcaac gatggtgact tggacgatcc
     1321 ccgaatagta aatagtgcta taaccggaaa aaaagcgggt tacgatgttt tcttttgtgg
     1381 gactaataaa tctgttccat tgaatactga tgcgtttaaa gagatattaa aaattgattt
     1441 cgtgcgtaaa gcaaaatttg caaaacccct tgcttcattc ctaaactatt ggccttggta
     1501 tccatatcct cgggaggcta ggatactgga gcgacagctg aagagtgtta tcagtcagat
     1561 aagaccggat ttaatacatg ctcataatat attcgcagga cgctacgcat cttccttggg
     1621 tataccaatg gtgctggacg atcatgaatt gtattcagtt gaagtgagag cggagtacga
     1681 taaagctacg ggtgtaaaaa caaaggtcaa agctaaactc aagggcaaac aatgggcagc
     1741 ttttgagcac aaattaggga gaaaacatcc tataattacg gtaagcgaag gaattgcgga
     1801 tcatcataga caatattgcc aaaatgtttt tgttgtacca aattatcctc gactaaacga
     1861 gatgaaatca accaatctta ccaaagcaac aaacgggaaa gtacagtcgg tttacttggg
     1921 tagagatcca gtcttgaacc catcttcatt tagagacatt tcgcatttgc atgcgatctt
     1981 ttcagatcga aagcatgtag gtaaccttgc tagaataggt gttgcaggac caaccacacc
     2041 tacgataaaa tccttcggct tggttcgaat ggtggatgcg tataggatta tgcaagagca
     2101 gtgtcatatc ggcctagtac cctggcgtag acattggttt cataagtatt gtgttcctaa
     2161 caaagtttac gaatatgcac actgtggact ttggttaata acgattgatg atctccatcc
     2221 agtcattaat gattttgggt cattatgtga tacattcgga aactaccaag aactaagcag
     2281 tcttcttgaa tactataata cacacactga tgaactgaat gaaaagcgcc ttagaagtct
     2341 caagcatgct caaacaaact tagtttggga gaaggtagaa cataaaattt tggaagcgta
     2401 cagaacagcg taaatcaaga tgaccaatta tcaaccatga ctagttcatg ttcatatttg
     2461 tattcaacag tcttagaact atgaaagtaa tttttaatcc actaatttca caagtgtcta
     2521 gagtacttgt gatccgcagc cggatatatt gttctatgca actggtatct tctaaaaact
     2581 attatggtaa cacaaattaa gcccaccgaa tagcaaggag gtaaatgaag attatggtta
     2641 tcattggaac gagaccaaca ttcatcgagt tggcacctgt catacatgaa ttaaaaaaaa
     2701 aaattgtaat gtcacaattt gtcacactgg acagcattat gataaggaaa tgtctgatat
     2761 atttttggag cagctacaga taccatcacc aaaatacaat cttcattctg gtgctggttc
     2821 gcatgcacaa caaactgcaa gaataattac tcgttcagaa aatgccctga taagagataa
     2881 tcccgattta gttattgtag aaggagacac gacaactgca ttcgcatctt ctttagcagc
     2941 tgcaaaactt aaagttccca tagcccatat tgaagccgga tgcaggtctt tcgataagac
     3001 tctgccagag gaaatcaaca gagttgtgat ttcacatgtt gcaaacctcc acttccctcc
     3061 gacacccaat tgtgcgagaa atttattgcg cgagggtgtg gataagaaag tcataaatct
     3121 tgcaggccat cccatagtag acgccataga tctcgttaga aaaaaactga aggaaattac
     3181 actccttggc aaaacaaaaa tcaacccaca tgagtattac ttcgtaacat tacacagaga
     3241 tttcaacgta gacgatcctt ccagacttga atatattctg agagagttag acaaagtttc
     3301 taatgttagg actgtagtat ttgctattca tccaaggaca agaaagcgga tacacgagtt
     3361 cggattaaca agatttctag gcaacatcat caagctgaaa cccgttgatt acattacctc
     3421 gctgtcgcta atcagacatg cctatgccat aattagtgat tcagggggtt tgaccaaaga
     3481 gagttgtata cttggcgtac cctcggtaac attacgacct aataccgagt ggatagaaac
     3541 aattggtgga tattcaaatc aattggcatt tagtaaaggc aatactttaa tgacatgtgt
     3601 aaaccggctt gaaagaaatt acgagttagc taaaaaaaat ttgaagctat cacaagatat
     3661 ttttggcgct gtgggtgtat cgagcaaaat agctgatcaa attatgacat cgatactctc
     3721 caactaacat gcatgacaag caatacttga gtaacacaac tctgcaatga tattacgttc
     3781 cggatttagt caaatgtaag atcagtggac gaaaatgata acatctataa tctagatatt
     3841 agaaaagcat taagaaaaat acagaacaca agaatagctg aaatattcgg attataaaag
     3901 ctcatacttt ttactgtgtc gcttgttatg cctccaaaaa taagtggata tttatatctt
     3961 aattctgcta gttcttgaat aaataaatga aagtagcatc tatcgtaggg gcccgaccga
     4021 attttgttaa attgggaccg gttcataaat cactgaagag ttcaggaatc aagcatctga
     4081 taattcacac aggtcaacac tatgattatg aaatgtcgga tattttcttt tcagattttg
     4141 aacttccaaa accaaatatc cacttaggaa taggatccgg aagttcttgt ttccagttag
     4201 gtgaaataat taaacgttta gagaataaat taattgataa acaaattgat ctcgttcttg
     4261 tttatggtga cactaattct accttggctg gagccatatg tgccaataaa tgtaatatta
     4321 aattaggaca tattgaggct ggattgcgta gctacgatcc ctctatgcca gaagaataca
     4381 ataggatttt gacggatcac ctgagcaatt atttattcgc gccaactagg aacgctgtca
     4441 ataatctgaa aaaggaaaaa ataataggta aagtatacta tactggagat ttatcagttg
     4501 aaattataga caagacaaga tcaatctcta aaaaatcaga aatacttgac atattggatg
     4561 tgaaatcaaa atcttttcta ctccttacaa tgcacagggc tgaaaatacc agttcaaggt
     4621 acttctttat acagctctta gagacatttg aagcgctcaa gcaccatgtc atagtgtttc
     4681 ctatacatcc tagaacgaaa aaaatgttca aaagttttgg gctcttagat agacttttaa
     4741 agtgttcgaa tgttaaaacg ttactcccag tgggatatat agattttata gcgctgttac
     4801 aaaattccct aaaagtcatt actgattcag ggggagtaca aaaggaagcg tacttactaa
     4861 acgtgccttg tattaccatg agaaagaata ccgaatgggt tgaaaccatc ggacaatgga
     4921 atgtccttac aggagttgat agcaagaaaa tagttaatgc cgtcagaaga caaacaccca
     4981 attctaaata ctcagaatcg gcttttggta aaggtaggac atcacaggtt attagtaaac
     5041 tagtttctag tatgatttct cattaatcct tttttcttct gtgataaagt tggacatggc
     5101 tatatattca attgtcactg atagaaatgt tcggtcttat tttcgtcttg cagtgcacgt
     5161 cgtgaaatct gttgccagaa ccacgtcgtt tttagtgttc gttatcaatt atgtcactta
     5221 caaaaaatgt attaacaaaa tcagaaagaa cctttattag ataattgcat tcttgacttt
     5281 ttaaagttca cctgcttacg tgggggagat tgtattatac tcatcagttt aagaaacgat
     5341 taaaagtttt agattcctag ctgagagcat gtacttaatt gtcatcacaa caactacaat
     5401 tttgttattg ttttcattat tttccttaca aggtgcaatc ggcctggaaa cttttagagg
     5461 tctttctttt tctatcgagg tacctgacac ctgggcttat acagaaactc cagagacacc
     5521 tatcgaacgc gtattaggcg ttagttctta tacttctgtg gtactggtac ctgttcagtt
     5581 tgccgaattg ctcattgagg agaaaggcga tatcacaatg ggtaacggta gtgcggcagt
     5641 agtttttgca aaggcttccg attactc
//
LOCUS       DASUMD010000236         6803 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1198265, whole genome shotgun sequence.
ACCESSION   DASUMD010000236 DASUMD010000000
VERSION     DASUMD010000236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6803)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6803)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6803
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1198265"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..435
                     /locus_tag="VFX26_06420"
     CDS             <1..435
                     /locus_tag="VFX26_06420"
                     /inference="COORDINATES: protein motif:HMM:NF014647.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="BMP family ABC transporter substrate-binding
                     protein"
                     /protein_id="HEX5574148.1"
                     /translation="LSDWDNETKGKLAALSQIKQGADFILHVADTSGQGVINAAKEKG
                     IYALGAVSDQNKLAPDTVVTSFVLDPIKAYDSVFKMISTNNFTGTIFSPGLESTKNST
                     TEDGIIYIAPFHGFQNKIPKDIQAKFVQLSQDIRNKKIIVSE"
     gene            complement(493..1959)
                     /gene="glnA"
                     /locus_tag="VFX26_06425"
     CDS             complement(493..1959)
                     /gene="glnA"
                     /locus_tag="VFX26_06425"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HEX5574149.1"
                     /translation="MPYKIVNGEFEPLTYTSDDVLLKIKEEGIKFLDLQFTGLFGRFH
                     HTTVASNMLRKEDFKDGLPKLDGSSIKGFTEIHESDLIIKPDPSTYALIPWIEKYPTA
                     RLICDILSGGEKRAPYLADPRGIAKNAEKFVKENGYDISYWGPEVEFFVFDKLQVNTL
                     TSFHSQSYEITSREAPWSTENVGYTLRLREGYLPSPPGDTLMDYRHECVDVLSSNFGI
                     ICDAHHHEVATAGQCEIDIRYDSIVNTADSVQSYKYIVKNIAKKHNMIATMMPKPIAL
                     DNGSGMHVNVSLWNKGKNLFYDPNDKYAELSQTARYFIGGILDHAKALAAIVAPTTNS
                     YRRLIPGYEAPVYIAWSTGNRSAIIRIPAHYKGERFAYLKRIEFRAPDPSCNPYLAFS
                     AIVAAGLDGIKKRTKTNDPVDADIFKMTDAQREEHKIKQLPASLRESIEELKSDSEFL
                     KPIFGKHVIERIIEDAAKQHMELAVRPHPHEFTMYADV"
     gene            2126..2761
                     /locus_tag="VFX26_06430"
     CDS             2126..2761
                     /locus_tag="VFX26_06430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574150.1"
                     /translation="MAEIDDNSSGKNSERKIDLDFIMELLKKETQIPKIQGISPDIYK
                     KIAQLIKELSIQKYEDLELDVHHELIRLLVLSTKSLIELRTRKLLENSNGNLSSLSLS
                     TDDYSKLTDEEKYIFEEERKVSQRKDLIKQSLIDGNVNNLDSISRIIRSKMIIIRFME
                     STDQFMGVDMAKYGPFIKEDVAILPFENARSLIERKVAVEINDLRFHVKET"
     gene            complement(3122..4162)
                     /locus_tag="VFX26_06435"
     CDS             complement(3122..4162)
                     /locus_tag="VFX26_06435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574151.1"
                     /translation="MTNKNNLINPERILSQTLDELRITNNKIKQNTSSMVKNLETSNN
                     DEFWINIMKAIVVICDENKYIFSKAELCDFLTIGAKGLDNKKYEPIVNSENQLMNKVV
                     SDTIFSIYKDIMENYDNVDNDLKNYYPKIILNIISIIRRGSDISGEKVNLYGLERYYL
                     KNKHDAVNKKLDISEPIVADVQKTDNIDAKKPNDNSSLQPLIPPSVKENIMSKKDLVN
                     SLSVITGRKKNELNELLAKIPEQDFKKINDLCINYSKLQKYSKLIGTEEFSHQIEIEL
                     GRKLNDRQLQHATISIRKVKTYVENVLDGKFVPHGSHGINHVKHNLEYGYQLMGLIEY
                     RRRRYSHSYNKN"
     gene            complement(4351..5157)
                     /locus_tag="VFX26_06440"
     CDS             complement(4351..5157)
                     /locus_tag="VFX26_06440"
                     /inference="COORDINATES: protein motif:HMM:NF013183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-binding protein"
                     /protein_id="HEX5574152.1"
                     /translation="MYIVEILCIGNELLSGITLNTNAHWLSRKITKIGGFVRRVLVIR
                     DDLNEIRLTLLESLNRKPNWIVVCGGLGPTYDDKTLLGIGKALKKRLILNNNALDMVK
                     KSYRDRHQRVKMNKARLKMAVIPKGSTPILNPVGNAPAVLLCVHKTQIICLPGVPNEM
                     KAIATRSILPRIKLEIGNFTIREINYYVQGISEAMISSRLTKIVASAPNDRLYLKTHP
                     RGYVNNIPTIRIQLVSKGYNEEVVKDLINKISKQLLAVIRKNKGKILKIS"
     gene            complement(5181..5645)
                     /locus_tag="VFX26_06445"
     CDS             complement(5181..5645)
                     /locus_tag="VFX26_06445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574153.1"
                     /translation="MLSTTEIQSPTPNQIKTLTLTDLVIMNKLSVSLKEQIKKYIDID
                     PFTTDDPFNENDDYEYSVILDKTNTNRVVSILATKKEPTVQLPWESIVGNQLVHLPIS
                     KSEAAALKHELMPKDTNNFYPFRKSTRIAGYIMFAFQICGLPPQSSLSQDMM"
     gene            5753..5883
                     /locus_tag="VFX26_06450"
     tRNA            join(5753..5774,5796..5811,5838..5883)
                     /locus_tag="VFX26_06450"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5808..5810,aa:Ser,seq:cga)
     gene            complement(6089..6778)
                     /locus_tag="VFX26_06455"
     CDS             complement(6089..6778)
                     /locus_tag="VFX26_06455"
                     /inference="COORDINATES: protein motif:HMM:NF013961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase domain-containing protein"
                     /protein_id="HEX5574154.1"
                     /translation="MNQISSYAETFRFYKVISEQYNDQVVLDSVKQLVPDKVLKLTAD
                     EKSFEALLHWFKNTFMKWMPKELQCARCNSPMRVQLGDGNSATFRKTEIHICDVCSST
                     QIFPRYDKILRIAETRIGRCSEWSILFGAIVNSLLIQTRIVHDYLDHCWNESLINKKW
                     VHIDSTLDYPISFGHPYYYEQNWGKKYEYVLAFSADSIEDVTKHYTQQWPIVQKRRGK
                     KDKVEEFKEIY"
BASE COUNT         2049 a         1169 c         1129 g         2456 t
ORIGIN      
        1 ttgagtgatt gggataatga aactaaagga aagttggcag cattgtctca gattaaacaa
       61 ggtgcagatt ttattttgca tgtagctgat acatctggcc agggagtgat caacgcagct
      121 aaagagaaag gaatctatgc acttggtgct gtctcagatc agaataaatt agctcctgat
      181 accgtagtga catcatttgt tttggaccca ataaaggcct atgactcggt tttcaaaatg
      241 ataagtacga acaactttac aggaacgatt ttttctcccg gactagaatc gacaaagaat
      301 tcaaccaccg aagatggaat aatatacata gcgccgttcc atggttttca gaataagatc
      361 cccaaagata ttcaagctaa attcgttcaa ttaagtcagg atataagaaa caaaaaaata
      421 attgtttcag aatgactatt cattgcaggt catttctatt ggcacaaata agcagattca
      481 tgtaatgtat gatcatacgt cagcatacat ggtaaattca tgtgggtgcg gacgtacagc
      541 tagttccata tgttgtttag ccgcatcttc aattatacgt tcaataacat gtttaccaaa
      601 tattggtttc aagaattctg agtcagattt taattcctca attgattctc ttaaacttgc
      661 cggcaactgt ttaattttat gttcttctct ttgggcatca gtcatcttaa atatatctgc
      721 atcaacagga tcatttgttt tggttctctt tttaattccg tcaagaccag cagcaacaat
      781 cgcagaaaaa gccaaatatg gattacatga gggatctggt gctctaaatt ctatcctttt
      841 taagtatgca aatctttcac ccttataatg tgcaggaatt ctaattattg ctgatctgtt
      901 acccgtactc caagcaatgt aaacaggtgc ttcatatcca ggtatcaacc ttctataaga
      961 attggtagtg ggagcaacaa tggctgccag agcttttgcg tgatccagta ttccaccaat
     1021 gaaatatctt gcagtttggg acagctcggc atatttgtca tttggatcat agaatagatt
     1081 ttttccttta ttccagagac ttacattgac atgcattcca gaaccattat ccaatgcgat
     1141 tggtttgggc atcattgttg ctatcatatt atgctttttc gcaatattct tgacaatgta
     1201 tttgtaactc tgaactgagt ctgctgtatt aacaatgctg tcatagcgaa tatctatttc
     1261 acattgtcct gcagttgcta cctcatgatg atgggcatcg caaattatac cgaaatttga
     1321 actcagaaca tcaacacatt catggcgata gtccatgaga gtatccccag gtggacttgg
     1381 aagatatcct tccctcaacc taagagtata tccaacattt tctgttgacc atggtgcttc
     1441 acgagaagtt atttcatagc tctgactatg aaatgaggtc aaagtattta cttgaagttt
     1501 atcaaagaca aagaattcta cctccggtcc ccaatatgag atatcataac cattttcttt
     1561 aacgaacttt tctgcgttct tggctattcc acgtgggtca gctaggtagg gcgctctctt
     1621 ttctccgcct gatagaatgt cgcatatgag tctggctgtg ggatactttt ctatccacgg
     1681 aattaaggca tatgtggaag gatcaggctt tatgattaaa tcggattcat gaatctctgt
     1741 aaagccttta atcgaggaac cgtcaagttt tggtaatccg tccttaaagt cttccttcct
     1801 taacatatta gatgccactg tggtatggtg aaatcttccg aataatccag taaactgtaa
     1861 atcaagaaat tttattcctt cttccttgat cttaagtaga acatcatcgc tagtatacgt
     1921 taagggctca aattctccat taactatttt ataaggcaat cagaaccgat tatattattc
     1981 tcataattaa gttttaaatt gagacaatag aattatgttt gatttgtaga gtgtgtactc
     2041 tttttttgca ttgttaaaaa atttagtaga ttaaaatttt aataaactgg tatttaaata
     2101 gaaattacca aaaaggtaga aattattggc ggaaatagat gataatagca gcggcaaaaa
     2161 ttctgaaaga aagatcgact tagattttat catggaactg cttaaaaagg aaacgcaaat
     2221 tccaaagatc cagggtatat cacctgatat ttataagaaa attgcacagc tgataaaaga
     2281 actctccatc caaaaatatg aagacctaga attagatgtg caccatgaac tgataagatt
     2341 gctggtacta tctacaaaat cattgattga attaagaact cggaagcttt tagaaaattc
     2401 taacggaaat ttgtcttccc tttcattatc tactgatgat tattctaaat tgacagatga
     2461 agagaagtat atttttgaag aagaaagaaa agtatcccaa agaaaggatt tgattaaaca
     2521 atctttaatc gatggaaatg tgaataattt agattccata tcgagaatca taaggtccaa
     2581 aatgatcata ataagattta tggaatctac ggatcaattt atgggagttg atatggcaaa
     2641 atatggtcca ttcataaaag aagacgttgc gattttacct ttcgagaacg caagatcctt
     2701 gatagaaaga aaagtagcag ttgaaataaa tgatttgcga tttcatgtta aggaaacata
     2761 gatatttgtt tcaatcataa tgactattag ttagtcttct tgcctcataa tggagtcgat
     2821 atagatcagt atattttgct cacgatttac ccaattatag ctttttttgc aatagctgta
     2881 cttggcaaga aatttaaact tgatgaagtc ttcaagtact ttttccaagg tattagttgt
     2941 attttgtttg cgatttttta tataatctta atcccaagag gaggtgccca gggtcttgcc
     3001 ttagttttga tattgtttgg agtcttgtta tttttcatgg ccagaaagca taagatatct
     3061 ccaaaagacc aaactctata gcaatgacat tcatatctta aactagtctg gtcaaaattt
     3121 tctaattctt gttgtatgaa tgagaatacc ttctgcgtct atattcaatt agtcccatta
     3181 actgatatcc atattctaaa ttatgtttta catgatttat tccatgtgaa ccatgtggaa
     3241 caaatttgcc atctagcaca ttctctacat atgtctttac tttcctgatt gagattgtag
     3301 catgttgtag ttgtctatca ttaagttttc ttcccaattc tatttcaatt tgatgactaa
     3361 actcctctgt tccaataagt tttgaatatt tttgtaattt actgtagttt atgcacaagt
     3421 catttatttt cttaaaatct tgttctggta ttttcgccag caactcattc agttcattct
     3481 tcttccttcc ggtaataaca ctaaggctat tgacaagatc tttcttgctc attatatttt
     3541 ccttcacaga aggaggtatc aaaggttgta gggaagaatt atcattgggc tttttagcat
     3601 ctatattatc ggttttttgc acatcagcaa caattggttc agaaatatct aatttcttat
     3661 ttactgcatc atgtttattt ttcagataat atctttccaa tccataaaga tttacctttt
     3721 caccactgat gtcggaacct cttctgataa ttgaaataat attcagaatg atttttggat
     3781 aatagttttt taaatcatta tcaacattat cgtaattctc cattatgtct ttgtatatac
     3841 taaatatcgt atcgcttact actttgttca ttaattggtt ttctgaatta actattggtt
     3901 catatttctt gttatccaat ccttttgctc cgatcgtcag aaaatcacaa agttcagctt
     3961 ttgaaaaaat gtatttattt tcgtcgcata ttacaactat tgctttcata atatttatcc
     4021 aaaattcatc attgttggaa gtttccagat ttttcaccat tgaggaagta ttctgtttta
     4081 ttttattatt ggttattcgc aattcatcta gtgtttgaga aagtatcctt tctggattga
     4141 tgagattatt tttatttgtc aatagttggt cacttttatt atgctataat actaattata
     4201 gtatttgcta tttaaagtaa atttctaata attcgttaag atagttacga cttggatttc
     4261 tttttgatta cgttaatttg ctcttgatct agcaactctt gacatgatta tgatattgat
     4321 ttgcactatt catcgtgcaa caacctaaag ctatgatatt tttaatattt tacccttatt
     4381 ttttcgaatt actgccaaga gctgttttga aatcttattg attaggtctt taactacttc
     4441 ttcattatat cccttagaaa ctaattgtat tcttatcgta ggaatattat taacataacc
     4501 tcgtgggtgg gtttttagat ataatctatc atttggggct gatgcaacta tttttgttag
     4561 tctggatgat atcatggcct cgctaatacc ctgaacatag tagttaatct cccttattgt
     4621 aaaattgcct atttctagtt tgattctagg taggatactt cttgtcgcta tcgctttcat
     4681 ttcatttgga accccaggta gacatattat ttgagttttg tgaacacaaa gtaatacggc
     4741 aggtgcatta ccaacaggat tcagtattgg agtagaccct tttggaatta ctgccatctt
     4801 caatctggcc ttattcattt tcactctttg atgtctgtct ctataacttt tttttaccat
     4861 atccaatgca ttattgttca aaatcaatct ttttttcaat gctttaccaa ttcccagtaa
     4921 ggtcttatcg tcataggttg gacctaatcc accacaaact actatccaat tgggtttcct
     4981 gttaagagat tctaataagg tcaagcggat ttcattcaaa tcatctctga ttactaacac
     5041 tcttcgaacg aatccgccaa tttttgtaat tttcctcgat aaccaatgag cgtttgtgtt
     5101 taacgttata ccagatagta attcattgcc aatgcataga atttcaacaa tatacattag
     5161 aagaccttat ctgaagtgga ttacatcatg tcttgagata gagaagattg cggcggtaag
     5221 ccacatattt gaaatgcaaa cataatatat ccagcaattc ttgtcgactt tctgaaagga
     5281 tagaaattgt tggtgtcttt tggcattaat tcatgtttca atgcagcagc ttctgatttt
     5341 gatattggta gatgtactaa ttgattgcca actatagatt cccaaggcaa ttgaacagta
     5401 ggttcttttt ttgtagcaag tatagatacc accctatttg tattggtttt atctaaaata
     5461 acggagtatt cataatcatc gttttcatta aatggatcat cagtagtaaa tggatcaata
     5521 tcaatatatt ttttaatttg ttctttcaaa gagactgata atttgttcat tattaccaga
     5581 tctgtcaaag ttaatgtttt tatttgattt ggagttggtg attgtatttc agtagttgat
     5641 aacataggtt gaagtactga taagttgatc attatataat ttttgatgtt tatttgtggt
     5701 caggtgctca acatttatag aattataaag attatcaata ctaaatccaa ttgccggggt
     5761 acccaagcta ggtaagatat gcatgattcc ctaaaagggg tcagcctcga gatcaaaatt
     5821 atgaataccg atgcgtaagc tgatgttcgc aagaactcgt gggttcgagt cccactcccg
     5881 gcgccctaat cgtagtttat gattgaatct gcaatgtaaa tccctcgcaa atcacaatat
     5941 agcatcaact tcatcagtta ataatatcgc atatcgctca tccaattgtt gtatttgttt
     6001 ctagtcctct actgaatctt taaaagcttc tatctcatcc ggttacagag gcagctggct
     6061 tgtacattta tgatttccag attatgctct aataaatctc tttgaattct tctactttat
     6121 ctttctttcc tcttcttttc tgaacgatag gccactgttg agtataatgt ttagtaacgt
     6181 cctctatact gtcagcggag aatgctaata catattcata cttctttccc caattttgct
     6241 cataatagta aggatggcca aaagatatgg gatagtctaa agttgagtca atatgcaccc
     6301 atttcttatt tatcaaagat tcgttccagc aatggtcaag ataatcgtgt actattctag
     6361 tttgaattaa taacgaattt acaatagcgc caaagagtat tgaccattca ctacacctac
     6421 cgattcttgt ttctgcaatt ctcagtattt tgtcatatcg tggaaatatt tgagttgaac
     6481 tacatacatc acatatgtga atttctgttt ttcgaaatgt tgctgaattg ccatctccaa
     6541 gttgaactct cattgggcta ttacatcttg cacattgtag ttcttttggc atccacttca
     6601 taaaggtatt tttgaaccaa tgtaggagtg cctcgaaaga tttttcgtcg gcggttaatt
     6661 ttagtacttt atctggtact aattgtttga cagaatccaa aactacctgg tcgttatatt
     6721 gctctgatat tactttatag aacctaaaag tctcagcata tgatgagatt tgattcaatt
     6781 caagttacta atatgagatt tat
//
LOCUS       DASUMD010000237         3974 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_92706, whole genome shotgun sequence.
ACCESSION   DASUMD010000237 DASUMD010000000
VERSION     DASUMD010000237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3974)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3974)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3974
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92706"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..561)
                     /locus_tag="VFX26_06460"
     CDS             complement(<1..561)
                     /locus_tag="VFX26_06460"
                     /inference="COORDINATES: protein motif:HMM:NF013704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006306 - DNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methyltransferase"
                     /protein_id="HEX5574155.1"
                     /translation="MLLEFQDSIIRGDCRKILSGLSANSVQLTITSPPYRNAIDYEAH
                     IEKNGYYRGKARKETGEYLDEMVQIFNEHIYRVTKDGGYCCIVIGNEVVNGTIIPLPH
                     MLLSKLVQPFGNWNLHEEIIWHKVTGGTNRYGSFVMNPYPKYFRANIMHEFILVLRKG
                     DVNSGRTNRNDILPAKHEEFTKEIANS"
     gene            complement(1189..2253)
                     /locus_tag="VFX26_06465"
     CDS             complement(1189..2253)
                     /locus_tag="VFX26_06465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003856 - 3-dehydroquinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase II"
                     /protein_id="HEX5574156.1"
                     /translation="MSVQKNKEFILKPLVEKEKLDDFLSKVSNVYLIYGDPSVITSKK
                     FRTIFHSDNADFVVCDTLDLLKKSKKSLNKSVGYIKKISNNNDLEEIVLASKYGADFV
                     IVEATDWKIIPLENLIAKLQKSGTKIYATTRNSEEIRTMFSVLELGVDGVILETDDVS
                     QVENSHDLLDNPTFKLEYARILELKDVGMGERVCVDTVSMMTMGEGMLIGSKSNFLFL
                     VHNESVGSSFTSPRPFRVNAGAVHCYTVTSDGTTKYLSELEAGVEILVISKDGTSRKS
                     TVGRSKIESRPMKLVKAQIDDSKGTVILQNAETIRLITKDNKLVSVTDLKVGDEVLAY
                     TKSSSGRHFGMPVDEFILEK"
     gene            complement(2234..3028)
                     /locus_tag="VFX26_06470"
     CDS             complement(2234..3028)
                     /locus_tag="VFX26_06470"
                     /EC_number="2.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate
                     synthase"
                     /protein_id="HEX5574157.1"
                     /translation="MAIGRQIRLSRILNNGKMLCIPMDHGITNGPIPGLEDVHGFIYR
                     CEESGVTSVIINKGIIKSLPRPPKVGLIAHLSASTSLGLSPNKKVQMGGVEDAIRLGA
                     DGISVHINIGAKEEPEMLQKLGIISDKCNEWNVPLIAMMYPRGENIKDPFNVDIVSHV
                     ARIGAEAGADIVKTVYTGDSESFKNVVRTCPVPVVIAGGPKATTDEDILEMCDGAMQA
                     GAIGVTFGRNIFQHKNPPQILNALSRIIFNSEKPREALKNIVSSKK"
     gene            complement(3211..3558)
                     /locus_tag="VFX26_06475"
     CDS             complement(3211..3558)
                     /locus_tag="VFX26_06475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HEX5574158.1"
                     /translation="MKRIEAIVHSERIPELNEELKKIGLSGCTIVDSKGRGKGEKPVV
                     QSGRGTGKYTSEFSARASLSTVVDDAEVDKVVKTILDTVSTGSPGDGKIFVSTVAEAI
                     DIGTQKRGNGALK"
BASE COUNT         1215 a          786 c          617 g         1356 t
ORIGIN      
        1 cgaatttgca atctcttttg taaattcttc atgctttgcg ggaagaatat catttctgtt
       61 tgttcttcca ctatttacat ctccttttct taaaacaagt atgaattcgt gcattatatt
      121 agctctaaaa tatttaggat atggattcat tacaaatgat ccatacctat tagtaccacc
      181 tgtaactttg tgccatataa tctcttcatg aagattccaa tttccaaaag gctgtaccaa
      241 ttttgataac agcatatgcg gtaggggaat aattgttcca tttacaacct cattgcctat
      301 tactatacaa cagtaacctc catctttagt tactctatag atatgctcat taaaaatttg
      361 aaccatttca tcaagatact cgcctgtttc ctttcttgct tttccacgat agtacccatt
      421 tttctcaata tgtgcctcat agtctatagc atttctatat ggaggggaag taattgtaag
      481 ctgtactgaa tttgcagata gtcctgatag aatctttctg cagtctcccc ggataatgga
      541 atcttgaaat tcaagtaaca tgaaattatt ttctgttcat taatcagccc atatcccgca
      601 tacttaaaaa aaataaactt gatgataaat taaattaata aaataagcag gtaagatcta
      661 caggattcca gagtatactt ggtttttaca tctcattagc taaaaaatta atggtaccta
      721 cgcgatgatt aagaaaaggg ggatcatgat ttcgtctcta aattacaata agcaacaaga
      781 ggtactcaga aaatcagatc cttccattga gatgataaac cattacttga ctttctttac
      841 ttattattag taccggatga gtaatctcac caattcgaga atgttggagt tgataatatt
      901 caatttgtca aattttcatc tgagagaaat gggagtacaa atagttgcaa aaccaagatt
      961 aactggtggg aagtatggaa tcgttgccta caatatgaac ccaccagttc aatgaacggt
     1021 taatcattag tgttcaacat ggaataaaat ggtttacatt gcctctattt ctcgtatata
     1081 cccactgagc ccaaataatc ttaagggtac gataaccaat cttatttagg gttggaataa
     1141 ttggtaatga gtcgaatatt atcagaacaa tattggaatt gatctcctct acttttctag
     1201 tataaattca tccactggca taccaaaatg ccttccagat gaagatttgg tataagctag
     1261 gacttcatca cctactttta aatcagtgac ggataccagt ttattgtctt ttgtgatcaa
     1321 ccttatcgtt tcagcattct gaagaattac agttccctta gaatcatcta tttgagcctt
     1381 taccaatttc attggtcggg attctatttt ggatctccct actgtagatt ttctgctcgt
     1441 tccatccttg ctaataacga gaatttccac acccgcttca agctcggata gatattttgt
     1501 ggttccatcg gacgtgacag tatagcaatg aacagctcca gcgtttactc taaatggtcg
     1561 tggggaggta aaggaggaac ctacagattc gttgtgtacc aggaacaaga aatttgattt
     1621 actgcctata agcatacctt cacccatggt catcatcgaa actgtatcta cacatactct
     1681 ttcacccatt cctacatcct ttaattctaa tattcttgca tattctaact taaaagtagg
     1741 attatcaagc aggtcgtgcg aattctcaac ttgagataca tcatctgttt ccaatataac
     1801 accatcaaca ccaagttcta aaacagagaa catagttcta atttcctctg aatttcttgt
     1861 tgttgcgtaa atttttgttc ccgacttctg aagtttggct ataagattct ccaatggaat
     1921 tatcttccag tcagtagcct caacaattac aaaatctgca ccatacttag atgcaaggac
     1981 tatttcttct aaatcgttat tattagatat cttttttata taacctacac ttttgttaag
     2041 acttttctta cttttcttca acaaatccaa agtgtcacat acaacaaaat ccgcattatc
     2101 agaatgaaat attgttctga attttttgct tgtgataacg gaagggtcac cataaatcaa
     2161 atacacattc gatactttgg ataaaaagtc atcaagtttt tctttttcta caagcggttt
     2221 tagaatgaat tctttatttt tttgaactga caatattctt taatgcctct cttggttttt
     2281 cactgttaaa aataattcta gataacgcat tgagtatctg tggaggattc ttgtgctgaa
     2341 atatgttacg tccaaaggta acaccaatcg ctccagcttg cattgcaccg tcgcacattt
     2401 ccaatatgtc ttcatctgtt gttgcctttg gtccacctgc gataaccaca ggaacaggac
     2461 atgtccttac aacattctta aaagattcgc tgtctccagt atagacagtc ttaacaatat
     2521 ctgctcctgc ctcagcacca atcctggcca catgtgatac aatatccaca ttaaatggat
     2581 ctttgatgtt ttcacctcta ggatacatca ttgcaatcaa cggaacattc cactcattgc
     2641 atttatcgga aataattccc aatttttgga gcatttcggg ctcttctttt gcgccaatat
     2701 ttatatgaac tgaaatacca tcagcaccta gccttattgc atcctccacc ccacccattt
     2761 gtactttctt gtttggcgaa agtcctagtg aggtactagc agacaagtgc gcaattaatc
     2821 ctacttttgg ggggcgaggt aatgatttga taatcccttt gtttataatg acacttgtaa
     2881 caccagattc ttcacatcgg taaataaaac catgaacatc ctctagcccg ggtattggac
     2941 catttgtgat tccgtggtcc atgggaatac aaagcatttt gccattattt agaatccttg
     3001 aaagtcttat ctgtctgcca atcgccatta atatttagat aattttgtta tctgacttaa
     3061 aagtgatatg tttctcttat tttttgatct gaagatgtgt agaaatactt cgagtttatg
     3121 aaaataagat ttgtggcgaa aacctcatca gattaaatag aatccaatcg tggtttggca
     3181 agacactgaa aaaattaata aacagaaaat ttacttgaga gcgccgtttc ctcttttttg
     3241 agttcctata tctattgcct cagcaactgt cgagacaaag atttttccgt cacctggaga
     3301 accggtactc acggtgtcca aaattgtctt tactactttg tcaacttcag catcatccac
     3361 aactgtagat aaacttgccc tagcagaaaa ttctgaagta tattttcccg ttccacgtcc
     3421 ggattgtacc acaggttttt cacccttccc tctacctttt gagtccacta ttgtacatcc
     3481 gctaagtcct atctttttta gctcttcatt taactctggt attctttcac tatgaactat
     3541 cgcttcaata cgcttcatat tttcacataa atatataaag aatataaggt tttcaaataa
     3601 ctttaaacag attaagaata taacattgca ttgtaataat acataattat cataatttta
     3661 tgcttttaaa ataatataaa tcggttggac ctacatgagt ctcacactct atgaaaaaac
     3721 agatattatt tgttgtagat ttggcattca agaatattat gaacagagtt gttatcgtta
     3781 cgaatccacg gcaatgctta tcccaccgtc atgatattga tactgcgcat aataacatat
     3841 gtctttttat ctcacgagta cttgagcgac taaaccacgg ataataaaag atgaagtgta
     3901 gtaaagtatt ttgagtctat ttgaatagat cggtatccag aatgtttttc attttgtaaa
     3961 gaaggtcatc aaaa
//
LOCUS       DASUMD010000238         2370 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_94626, whole genome shotgun sequence.
ACCESSION   DASUMD010000238 DASUMD010000000
VERSION     DASUMD010000238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2370)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2370)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2370
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_94626"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..614)
                     /locus_tag="VFX26_06480"
     CDS             complement(<1..614)
                     /locus_tag="VFX26_06480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II glutamine amidotransferase"
                     /protein_id="HEX5574159.1"
                     /translation="MVHENCGVVGFFSLDGHNVIPYVIDSLRALQHRGQEAWGFAVPT
                     KSPYKSLGLVSASRNFKSIIRKFNSHAAIGHVRYSTFGKSNLDNAQPLKIKDLCIAHN
                     GTIANVEELSNMVGGCTFSPQTMTDTLLAAQRLMMHLEKNDNMVQALRVLKEEMIGSF
                     CFTLLTDEGSVYAVRDTRGFRPLVLGHIEETNTYMISSESCAIDT"
     gene            complement(672..>2370)
                     /gene="purL"
                     /locus_tag="VFX26_06485"
     CDS             complement(672..>2370)
                     /gene="purL"
                     /locus_tag="VFX26_06485"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR01736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HEX5574160.1"
                     /translation="FDNSFKDYCLVDVAAIGLGKKDQIISNHAEEGDLIVLAGNPTGK
                     DGIRGASFASKLLDNEEDRSAVQIPDPFLEKLLIEATIEATNSNCINATKDLGGGGLS
                     CCLSELSHLVEKGFEIELSAVHTKIADISPNEIMISESQERMAYIINKEKLSRFTSIL
                     AKYGITYSIIGKVSGKDNLKILYDGKPIANISCNLMVKAPLSKRKARKPDYLNRLKRK
                     IELSKVENYNYILLRLLANPNIGNKDWIYQQYDHEVGLRTVIKPGADASVIRVNDNKF
                     VSIKLDGNSKHCYLDPYQGMLGCLSEACRNVVCTGAQPIGIIDHLQFGSPENPQIYWT
                     FIKSIDAIVDFCKYMKIPIVGGKVSFYNETMNSPIKPSPVIGTIGLIKDRSHITNSIP
                     ISGNTLFILGQTSEELGGSEYFEIIDRQTYGSVPKVNLKTDKKNRLAVLELIEKGLID
                     FVHDCSKGGIGTALAELAISGNLGINIDLKKIPNNCSRHDYLLFSESHSRFIIGTRRA
                     DRLKRILSRRKCIFSEIGKTDPTKTLNLHYSDKEIINLSNDDLIHHYNKLNITMDGS"
BASE COUNT          711 a          479 c          379 g          801 t
ORIGIN      
        1 gtatcaatag cacatgattc agaagatatc atatacgtgt tggtttcttc aatatgaccc
       61 aataccaatg gccggaatcc gcgtgtatca cgaactgcat aaacagaccc ctcatcagtc
      121 aaaagtgtaa aacaaaatga ccctatcatt tcctccttta atacacgtaa ggcctgaacc
      181 atattatcat tcttttcgag atgcatcatc aatctttgtg cagcaagtaa agtatcagtc
      241 atagtttgcg gcgaaaaagt gcatccgcct accatgttgg acaattcttc aacatttgct
      301 atggtgccgt tatgagctat gcaaagatct tttattttta aaggttgtgc attatccaaa
      361 ttactctttc cgaaggtgga atatctaaca tgaccgatgg cagcatgaga attgaatttt
      421 ctgataatac ttttaaaatt tcttgaagcc gaaaccaaac ctaaactttt gtatggcgat
      481 ttagtgggta ctgcaaaacc ccaggcctcc tgacccctat gctggagtgc tcgtaaggaa
      541 tcaattacat aggggatcac attatggcca tctagtgaaa aaaaaccaac gactccacaa
      601 ttctcatgaa ccattaggga tcatttcttc gagacggatt taattaaaat ttactccaca
      661 taaatttgtg actaagaacc atccatggtg atattcaatt tgttgtagtg atgaatcaaa
      721 tcatcatttg ataaatttat aatttctttg tcagagtagt gaagattcag agtctttgtc
      781 ggatcagttt ttcctatttc agaaaaaatg cactttcttc tactcaatat tctcttcaac
      841 ctgtcggccc tcctagtccc tattatgaac cttgaatggc tttcagaaaa gagtagatag
      901 tcgtgacgtg agcaattatt tggaattttc ttcaaatcta tatttattcc cagatttcct
      961 gaaatggcca attcagccaa tgccgttcca attccaccct tggaacaatc atgcacaaaa
     1021 tcaattagtc ctttttctat tagttctaac acagctaacc tgtttttctt gtcggttttc
     1081 aaatttacct taggtacgct cccatacgtt tggcggtcaa ttatctcaaa atattcagag
     1141 ccacctaatt cctcacttgt ttgacccaaa atgaataaag tatttccact aattgggata
     1201 ctattggtta tatgagatcg gtctttaatc agaccaatag taccaattac tggtgacggt
     1261 ttaataggag aattcattgt ttcattataa aaactgactt ttccacctac gattggaatt
     1321 ttcatatatt tacaaaaatc tacgatggca tctattgatt ttataaacgt ccaatatatt
     1381 tggggatttt caggactacc aaattgaaga tgatctatta tgccaatggg ttgcgcaccc
     1441 gtacatacaa catttctgca ggcttcagac aagcatccta gcattccctg ataaggatca
     1501 agataacagt gtttggaatt cccgtctagt ttgatagaca caaatttgtt gtcatttact
     1561 cttataacgg atgcatctgc accgggtttt atcacagttc tcaagcccac ttcgtggtca
     1621 tactgttggt agatccaatc tttattacca atgttaggat ttgccagcaa acgtaacaaa
     1681 atgtagttgt aattctcaac tttggacaat tcaattttcc tttttaacct attcaaatag
     1741 tctggttttc ttgctttcct tttagatagt ggtgctttta ccattaaatt acaagagata
     1801 ttggctattg gtttgccatc ataaaggatt ttgagattat ccttaccact tactttacca
     1861 ataatggaat acgttatgcc atattttgct aatatactag taaatctaga taatttttcc
     1921 ttgttgatga tgtatgccat tctttcttgc gattctgaaa tcattatttc atttggagat
     1981 atatcagcta ttttggtatg tacagccgat aattcaattt caaacccttt ttcaaccaaa
     2041 tgagataatt cagacagaca acatgacaaa cctccacctc caaggtcctt tgtagcatta
     2101 atacagttac tattagttgc ctcaattgta gcttcaatca ataatttttc taaaaatgga
     2161 tcaggaatct gaacagccga tctatcttct tcattgtcca gtaattttga agcaaaggat
     2221 gctcctcgaa ttccatcttt tcctgtagga ttgcccgcaa ggactattag atcaccttcc
     2281 tctgcatgat tggaaataat ttgatctttt ttgccaagcc ctattgccgc aacgtcaact
     2341 aaacaatagt ctttgaagga attatcaaat
//
LOCUS       DASUMD010000239         2299 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_760570, whole genome shotgun sequence.
ACCESSION   DASUMD010000239 DASUMD010000000
VERSION     DASUMD010000239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2299)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2299)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2299
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_760570"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..429
                     /locus_tag="VFX26_06490"
     CDS             <1..429
                     /locus_tag="VFX26_06490"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HEX5574161.1"
                     /translation="STENGQVLVSFLNSTEPSGVIDGNLVEGTINSSSISAPLANLTN
                     NVTFADIFPSNLTNATSAVPTGNLTNATSAVPTGNLTNATSAVPTGNLTNATSAVAPP
                     SKLEALIDLMNQNMTYINIHTSDFPEGELRGTLTSINSTG"
     gene            530..1330
                     /locus_tag="VFX26_06495"
     CDS             530..1330
                     /locus_tag="VFX26_06495"
                     /inference="COORDINATES: protein motif:HMM:TIGR00162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proteasome assembly chaperone family protein"
                     /protein_id="HEX5574162.1"
                     /translation="MSFFESDIKAVFSTKKFPSLRSPILICGFPGSGFVGKLAIDHVI
                     SELECAHLADIYSTSFPPQVVIKNTGTVELMKNILYYVKNSGSKHDFLFLTGDAQPIS
                     SRIEYLLGEEIVKIAKNLGVTQIITLGAYITGLFVETPRIFGVATDDDGLKLLNSFSI
                     SKIDNGSISGMNGILLGIGKINNLNGISLLGETSGYVIDANASKYILKKLLAIVDLDI
                     NMEDLDKKAKDTIMLIKSIEHRIGGKNALSDDVQQMVQKKKPEIGYIS"
     gene            2024..>2299
                     /locus_tag="VFX26_06500"
     CDS             2024..>2299
                     /locus_tag="VFX26_06500"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX5574163.1"
                     /translation="MSDSGSNRYLSIVDDESDITMSFHEALKSIPGITIFTFTEPQLA
                     LEHFKTNKNSYALVISDLRMPVINGFQLLKTVKDLNPEVRTLLITAFE"
BASE COUNT          789 a          371 c          431 g          708 t
ORIGIN      
        1 tcgacagaga atggtcaagt gcttgtatca ttcttaaact caactgaacc ttcaggcgtt
       61 attgatggta atctggttga agggacgata aattcttcaa gtatatcggc accgttagca
      121 aaccttacaa ataatgtcac atttgcggat atatttccta gcaatttgac aaacgcgaca
      181 tcagctgttc caactggcaa tttgacaaac gcgacatcag ctgttccaac tggcaatttg
      241 acaaatgcca catcagctgt tccaactggc aatttgacaa atgccacatc agctgttgca
      301 ccccctagca aattggaagc attgatcgac ttgatgaacc aaaatatgac ctatatcaat
      361 atccacacct cagactttcc tgaaggagag ctaagaggaa cattgacctc gataaactcg
      421 acgggataac tattttttat tccatacttt tttgtaatgc ggacttttat catttcttga
      481 tgatcgattg cggcaaaaga atttaagata actttgcgca tttataataa tgtcattttt
      541 tgagagtgat ataaaggcgg ttttttctac aaagaaattt cctagcctac ggtcacctat
      601 tttgatttgt ggatttcccg gaagtgggtt tgtaggcaaa cttgcaatag atcatgtaat
      661 cagtgaattg gaatgcgcac atttagccga tatttattca acttcatttc ccccgcaggt
      721 tgtaataaag aatacaggaa ctgtggaact tatgaaaaat attttgtatt atgttaagaa
      781 cagtggaagc aaacatgatt ttttatttct tacaggagat gctcaaccga taagttctag
      841 aatagaatat ttgttaggag aagaaatagt aaaaatcgcc aaaaatctcg gggttacaca
      901 aatcataact cttggagcct atataacagg gttgtttgtc gaaactccca gaatattcgg
      961 tgttgctaca gacgatgatg gattgaaact cttaaattca ttcagtatat caaagataga
     1021 taatggcagt atctcaggaa tgaacggtat tctactgggt attggtaaga taaacaactt
     1081 aaatgggatt agtttgctgg gagaaacgtc aggatatgtt attgatgcaa atgcatcaaa
     1141 gtatattctt aaaaaattac tagcaattgt cgatctggat attaacatgg aagatttgga
     1201 taagaaggcg aaggacacaa taatgttgat aaaaagcata gagcatagaa ttggcggtaa
     1261 gaatgcgtta agtgacgatg ttcagcagat ggttcaaaag aagaaacccg aaattgggta
     1321 cattagctga taatggtgga aatctaattt tagataaaaa ttaatgatac taaatttaag
     1381 aatgcaccta aaaattatag ttttgcatta gatagaattt gtaaaactct ttttgtggcg
     1441 attctggtca aatgtttata tatcatatat ataagtattt attcattaaa ctaaagttta
     1501 atccatgtat attaaatgag aaattctaat acaagtatct aatagtaacc cttggcaaca
     1561 gaagatttaa aaaacataat ttggcaactg atggcacacc gatcgaatga acaagaaaca
     1621 accaagcccg ccatcaattg cctgtgttta agctgataca acttgcgggc actttcatat
     1681 aaacagctgc gaacaatctt ataggatcta gtttgaaatt atactgattc aaaactccat
     1741 tatcatacta caaaatggtc gaaattgtga aaatatgttg caaaagatag agtttcagtt
     1801 actgattatt taaagtgtaa caaaaatttg gagtctactt gtttatagta tgttgagcat
     1861 aaacctaata gaactcatga ctggcggatc cacggcctcc attagcatca tacagtccgc
     1921 cagtttagtt taaattattt tatatggtga gcctttctcg tcggtttata tggcaaaggg
     1981 atattacgcc gatttaagat aaaatcatag gaatggtaaa aggttgtcag attctggttc
     2041 taataggtat ttgtcgatag tagacgatga atcagatata actatgtctt ttcatgaagc
     2101 gttaaaaagt attccaggaa ttacgatatt tacctttact gaaccgcaac ttgcacttga
     2161 acattttaaa acgaacaaga attcctatgc tttagtaatt tctgatctga gaatgccagt
     2221 aatcaatgga tttcaattat taaaaacagt gaaggatttg aaccccgaag taagaacact
     2281 tttgatcaca gcctttgaa
//
LOCUS       DASUMD010000240         3125 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_205920, whole genome shotgun sequence.
ACCESSION   DASUMD010000240 DASUMD010000000
VERSION     DASUMD010000240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3125)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3125)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3125
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_205920"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..427)
                     /locus_tag="VFX26_06505"
     CDS             complement(<1..427)
                     /locus_tag="VFX26_06505"
                     /inference="COORDINATES: protein motif:HMM:NF014527.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase family
                     protein"
                     /protein_id="HEX5574164.1"
                     /translation="MTKMLKEVLQEKLDITELEKLSSSFDIIGSIAIIKIPETLSSKK
                     KLIADTLIEEIKPLKTVFCQVSAIEGDYRLRKLELISGENTPITIYREHGCTFKVDVI
                     NAYFSPRLSTERLRISKLIEPNEVIVNMFGGVGTFSIIIS"
     gene            complement(443..2239)
                     /locus_tag="VFX26_06510"
     CDS             complement(443..2239)
                     /locus_tag="VFX26_06510"
                     /inference="COORDINATES: protein motif:HMM:NF009945.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis/translation initiation
                     ATPase RLI"
                     /protein_id="HEX5574165.1"
                     /translation="MNSNSTHRVAVLDEELCQPKKCGLECIVYCPVNKTGGECIVQRP
                     EDGKAVISEELCTGCGICIKKCPFDAIVIVNLAKEIGDHKIHQYGINSFRLYHIPLLK
                     KGSVVGLLGRNGIGKSTLLNILSGSIKPNLGNYDSELEWDDIINNFQGTELKPHFEKI
                     SSGNLRTSIKPQMVQLIPKAFKGTVRELLKKYDERGMIDLVTDQLSLNRSLDRSLSEL
                     SGGELQRLAVAIAVNKDADYYFFDEPSSYNDIYQRLAVARTIKQLASDGKNVMVVEHD
                     LTLLDYLSDYIHILYGEPSAYGIVAPIQGTRVGINAFLDGFIPAENIRFREKSFKFDG
                     SNKNEELIVDRALTKFSDLTKSFTSFKLDVSHGEIREGEIVGLVGANALGKTTFMKMI
                     AGIEKTDSGEINIQASLSYKPQYLQNDYDGNIESLLNVAYQGPIEGSTMEQQIVVPMG
                     IKKLYDKRVDTLSGGELQKVAVCCSLIRPADIYALDEPSAFLDVEDRINIAKFLHRFV
                     KSQGKSAIIVDHDMQLIDLVADSLIIFSGNPGEQGFAGSPIKKDTGMNKFLENLSITY
                     RRDENTGRPRINKLGGRLDRAQKNSGDYYKRT"
     gene            2722..2883
                     /locus_tag="VFX26_06515"
     CDS             2722..2883
                     /locus_tag="VFX26_06515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574166.1"
                     /translation="MGGHKAYPSHSGTRMYFYEDRIEVDSPKLVIPYRSMKNIENMTE
                     RRISTLRVE"
BASE COUNT          931 a          626 c          525 g         1043 t
ORIGIN      
        1 gtgatattat gatcgaaaac gttcccacac ctccaaacat atttacaatc acttcatttg
       61 gttcaatcaa tttcgatatc ctcaatcgtt cggttgatag tcttggcgaa aagtaagcat
      121 tgattacatc tactttaaaa gtacatccat gttccctata aatggtaatt ggcgtatttt
      181 cgccagatat caattccaac ttcctcaatc tataatctcc ttcaattgct gatacttgac
      241 agaataccgt ttttaatggc ttaatttcct caatcaatgt atctgcaatc aatttctttt
      301 ttgaggatag tgtttctgga attttgatta ttgcaatact gcctatgata tcaaatgaag
      361 aagacagctt ttcgagttct gtaatatcaa gtttttcttg caatacttct tttaacattt
      421 ttgtcatttt ttgactaatc cgtcaagtcc tcttgtagta atctccggaa tttttttgag
      481 ccctatccaa tcttccaccc aatttattta ttcttggtcg ccctgtattt tcatcacgtc
      541 tgtacgttat ggacaagttc tcaagaaact tattcattcc agtatctttc tttattgggg
      601 aaccagcaaa tccttgttct ccaggatttc cagaaaagat aatcagtgaa tcggcgacca
      661 aatctattaa ttgcatatca tgatcaacaa ttattgcgga ttttccctga gattttacaa
      721 acctgtgaag aaattttgct atattaatcc tatcctccac atctaagaat gcagaaggtt
      781 catccaaagc atagatatct gcaggtctta tgagagaaca acaaacggcg actttttgca
      841 gctctccacc actcaacgta tctactctct tgtcataaag ttttttgata cccattggca
      901 caacgatctg ctgttccatc gtagaacctt caatcggtcc ttgatacgcg acattcagga
      961 gggattcaat gttaccatca tagtcatttt gcaaatattg tggtttgtac gacaaactcg
     1021 cctgaatatt tatttctcca ctatctgttt tctctatacc tgctatcatt ttcataaatg
     1081 tggtcttgcc caatgcatta gctcccacta ggcctactat ttctccttct cttatctctc
     1141 catgagaaac atctagcttg aaggaagtaa atgactttgt taaatcagaa aactttgtca
     1201 gtgctctatc aactattaat tcctcatttt tgtttgaacc atcgaacttg aatgattttt
     1261 ctctaaatct aatattttct gctggaataa aaccatccaa aaaggcgttt atgcccactc
     1321 gagtcccttg tattggcgca acgattccat acgcacttgg ttctccatac aagatatgaa
     1381 tatagtctga gagatagtca agtagagtca ggtcatgttc tactaccatt acgtttttgc
     1441 catcgcttgc aagttgcttt atggttcttg caacagctag acgctgataa atatcgttat
     1501 atgatgaagg ttcatcaaag aaataatagt ctgcatcctt attcacagcg attgcaactg
     1561 ccaatctttg taattctcca ccactcaatt cagagagtga gcgatccagt gacctattga
     1621 gtgacagttg atcagttacc aaatcgatca tacctctttc atcatacttt ttcaaaagct
     1681 ctcgcactgt tcccttaaag gccttgggaa ttaattgaac catttgaggt ttgattgatg
     1741 tgcgtaaatt accggaagaa attttttcaa aatgaggctt taactctgtt ccttgaaaat
     1801 tgtttattat atcatcccat tctaactcag aatcgtagtt acctaaattt ggcttaatac
     1861 ttccagataa tatattcaat agcgttgact tcccgattcc atttctcccc aaaagtccta
     1921 ccactgagcc tttttttagt aaagggatgt ggtagagtct gaatgaattt ataccatact
     1981 gatgtatttt gtgatctcca atttcttttg ccaagttgac aattactatt gcatcaaatg
     2041 gacacttctt aatacagatt ccacaccctg tacataattc ttcagaaatc actgctttcc
     2101 catcttcagg tctttgaaca atgcattctc cacctgtttt gtttaccgga caatatacta
     2161 tacattccag tccacatttc tttggttgac agagttcttc gtccaacacg gctactctgt
     2221 gagtagaatt agagttcatt tgtaactgta ctagtactca tgaaagaata tattataatt
     2281 gttgatgccg taattgattg gatactacta ttttgttact tatttactta tttttgtaat
     2341 ggaatgctat atttctagaa atactaaaaa gtatcaggtt attgagaaat ttaagatggg
     2401 tgatccatat tgtaatgacc cacggtgcca gaggaaccgg aatggagaga gacataaggc
     2461 gcacgtaata tctgaaaaac tagcgaacat ctactttggc gaaaattatt gtaatgaccc
     2521 acggtgccag aggaaccgaa atggagagag acacgaagca cacaatgaga gactcatttt
     2581 aaaagaatcg accgctgaaa ggtttttgat actactgagg tatattcgta ctgtaatgac
     2641 tcaaggtgcc agacaaacag ggcaggagag agacatagac cgcattcccc agacaatcca
     2701 tattcttatt atattaaata tatgggcggt cacaaagcat atcccagtca ttcgggtact
     2761 agaatgtact tttacgaaga cagaatagag gttgacagtc ctaaactagt tatcccatat
     2821 agatctatga aaaacatcga aaacatgacc gaaaggagaa tttcaaccct gagagtagag
     2881 tagttgctct tggcttaatt ttcgttccac ttgctatagt tggtgctttg tggaaaaaga
     2941 atcatatcta tactgtcatt cgtttcaatg atgattccga tgacccaaat gattattgtg
     3001 gattttgacc aaaatctcga ttcagcccaa tcagtaattt atgatagaat gttacaattc
     3061 cgaaataaaa ggtagcaggg aaaagtatga ttagggatta gcagcacgat gatggaatta
     3121 ttgtg
//
LOCUS       DASUMD010000241         2723 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1644536, whole genome shotgun sequence.
ACCESSION   DASUMD010000241 DASUMD010000000
VERSION     DASUMD010000241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2723)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2723)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2723
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1644536"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..596
                     /locus_tag="VFX26_06520"
     CDS             <1..596
                     /locus_tag="VFX26_06520"
                     /inference="COORDINATES: protein motif:HMM:NF014411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase"
                     /protein_id="HEX5574167.1"
                     /translation="EHRFSSIIKSISYLIKNTDYKLVLIMLNAMKSALRSYHLEQNLL
                     NLAKDYPDKFIITPLWKEYSHVIEFLDSGHCWAEMTDSGSMQEELLYFPNVLSLTVRL
                     NTDRPETIFDARGNILIPPVNSSWITTLIDEAFNRKEGLGLELKNKRKIYGEPGTVSK
                     KIVKIVKKEFENGDANFYPWLHQRIGLWKEKQIIDYM"
     gene            complement(597..1847)
                     /locus_tag="VFX26_06525"
     CDS             complement(597..1847)
                     /locus_tag="VFX26_06525"
                     /inference="COORDINATES: protein motif:HMM:TIGR03991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative sugar nucleotidyl transferase"
                     /protein_id="HEX5574168.1"
                     /translation="MSIVFFEDTSWKNFVPLSYTRSLFDLKIGSLTTFEHFNNKSSKF
                     LTRQYLEDVTKERHPDNIVNKFEYNVDDIFINSLFIPLKSFFKKWSMKKKFVISLGDR
                     ILMGRFDKSDFEYLYESVVHDKKINSNRISTEMTDINDLDECGTLYSWPWDFIFHLKQ
                     ILTSQLRLKNKVPNGIKVIGNNPVYVDKTSIIGGGTILDASDGGIYIGPQSTIYQSSI
                     NGPVHVGESSQVKPYSIVSNSYIGNNCRMAGEIDSSIILDYTNKSHIGYLGHCYVGEW
                     VNIGANTVTSDLKMTYGTISMKVGNEKKDTKTIKLGSFFGDMSKTSIGTNIYCGMRIG
                     VSSHIYGNIFNDVPSYVIYGKGIGSENAEMNISSSIEFQKRMMSRRNVNMSLGYETMM
                     KTLFEITSSERKKYDVHSKRFTIR"
     gene            complement(1851..2558)
                     /locus_tag="VFX26_06530"
     CDS             complement(1851..2558)
                     /locus_tag="VFX26_06530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEX5574169.1"
                     /translation="MKAIILAGGLGTRLQPYTFFIPKPMLPLGNKPLLEHIIEWLKSD
                     DSNIDHIIICVSYLHRTIEDYFEDGSRLGIKIEYARSDRPLATAGQLLTAKRFIDDTF
                     VCVYGDSIYEFSLREMINEHDRLKAFTSMALLSYKTRLKYGFIDINGSNRVTSWNEKP
                     EIKGLINIGCYVMEPEFIDLIPSSNAYGMDDAVRKALDMKKLVNGFKIESGFIDIGDK
                     KSYLQTYKKYVERLGKI"
BASE COUNT          858 a          501 c          427 g          937 t
ORIGIN      
        1 cagaacatag attttcatca ataattaaaa gtatatcata tttgattaaa aataccgatt
       61 acaagctagt tcttataatg ttaaatgcaa tgaaatcggc tctgagatca tatcatctag
      121 aacaaaatct actgaatttg gcaaaagatt atccagataa atttattatt actccactat
      181 ggaaagaata ttctcacgta atagaatttc tagatagtgg acattgttgg gcggaaatga
      241 cagattcggg ctcaatgcaa gaagaattac tgtactttcc aaatgtttta tcacttaccg
      301 ttagactaaa tacggacaga ccagaaacca tttttgacgc tcgtggcaat atactaattc
      361 ctccagtaaa ttcctcatgg ataactacct tgatagatga ggcattcaac agaaaagaag
      421 ggctcgggct tgagctcaag aataaaagaa agatttacgg tgaaccgggg actgtatcaa
      481 agaagattgt aaaaatagtg aaaaaggaat ttgagaatgg tgacgcaaat ttctatccgt
      541 ggttacatca aagaattggt ctctggaaag agaaacaaat tatagattac atgtaactat
      601 cgtatagtaa atctttttga gtgtacgtca tacttttttc tttcgctgct tgtaatttca
      661 aacagtgttt tcatcatcgt ttcatatcct aaagacatat tgacattcct ccttgacatc
      721 attctttttt gaaattcgat tgatgaagaa atattcattt ctgcattttc tgatccgata
      781 cctttgccat aaatcacata ggaaggaacg tcattaaaaa tatttccata aatatgtgaa
      841 gagacaccaa ttctcattcc acaataaata tttgtgccta ttgatgtttt agacatatct
      901 ccaaaaaaag aacctaactt aattgtcttt gtatcttttt tttcgttacc tactttcatt
      961 gaaattgtgc cgtaagtcat tttgagatca gaggtgactg tattggcccc gatatttacc
     1021 cattcaccta cataacagtg acccagatat ccaatgtgag acttgttggt ataatccaga
     1081 attatcgaag aatctatttc tccagccata cgacaattgt taccaatgta tgaattgctg
     1141 actatcgaat acggctttac ttgactggat tctccaacat gaactggacc attgattgaa
     1201 gattgataaa ttgtggactg aggtccaata tagattcctc catcgcttgc atcaaggata
     1261 gtgcccccac caattattga agtcttgtcc acatatacgg gattattacc aataactttg
     1321 attccattag ggactttgtt tttgagtcta agttgagaag tgagtatctg cttgagatgg
     1381 aatataaagt cccacggcca actgtataga gtaccacatt catctaggtc attgatatct
     1441 gtcatttctg tgcttattct gttactatta attttcttat catgaactac cgattcgtaa
     1501 agatattcaa aatctgattt gtcgaatctt cccattagta tcctgtctcc caacgatatc
     1561 acaaatttct tcttcatact ccattttttg aagaacgact ttagaggaat gaatagtgaa
     1621 ttaatgaata tgtcatccac attgtattca aatttattta ctatattatc tggatgtctt
     1681 tccttggtta catcttctag gtattggcga gtaaggaatt tcgatgattt gttattgaaa
     1741 tgttcaaacg tcgtcagtga gccaatttta aggtcaaaca aagatcttgt ataactaagt
     1801 ggtacaaaat tcttccaact agtatcttca aagaaaacga tactcataac ttagatcttt
     1861 cccaatctct caacatattt tttgtaggtt tgaagatatg attttttatc acctatgtca
     1921 atgaaccctg attctatttt aaatccattc accaactttt tcatatccaa tgcttttcgg
     1981 acggcatcat ccattccata ggcgtttgat gatggtatca agtcaataaa ttcgggttcc
     2041 atcacatagc agcctatgtt tatcaatccc tttatttcgg gtttttcatt ccagctagta
     2101 actctattgc ttccatttat atcaataaaa ccatacttta gccttgtttt gtaggataat
     2161 agagccattg aagtaaatgc tttgagtctg tcatgttcat ttatcatttc tctaagtgag
     2221 aactcataaa tggagtctcc atatacgcat acaaatgtat catcaataaa cctcttggct
     2281 gtcaatagct gccccgcagt cgctagaggt ctatcggacc ttgcatattc tatctttatt
     2341 ccaagtctgc taccatcttc aaaatagtct tctatagttc tatgtaaata actcacacaa
     2401 attattatat gatcaatatt actgtcatca ctcttcaacc actcaataat gtgttctaat
     2461 agtggtttat tcccaagagg taacattggt ttcggaatga aaaaagtgta tggttgaaga
     2521 cgggttccaa gaccgccagc taaaattatc gctttcattt aaaattatac ttaaattgaa
     2581 ctataatata agtaaaaact attcaaaatt tttatcgtcg agtatttttt taaccttatc
     2641 tacaacttct tgcggactat gtccaaagat tattatcatt ggttcttttc cgacgtcccc
     2701 tgaatgagat atgatatctg cat
//
LOCUS       DASUMD010000242         2539 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_319363, whole genome shotgun sequence.
ACCESSION   DASUMD010000242 DASUMD010000000
VERSION     DASUMD010000242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2539
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_319363"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1205)
                     /locus_tag="VFX26_06535"
     CDS             complement(<1..1205)
                     /locus_tag="VFX26_06535"
                     /inference="COORDINATES: protein motif:HMM:NF012956.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="discoidin domain-containing protein"
                     /protein_id="HEX5574170.1"
                     /translation="MIKCIYAILGTYLIKFASCNAWRGNQLKLCVFLVTFLVLIFSSA
                     LVQSPHVYGQSDSFGSSNTCSKLPVNGITASGADNLHPPSHAIDQNLNTRWSNLGLGS
                     WIQIDLGRENVICGVGINWHRGNERVNTFAISISKDGKSFTNVYSGKSDGKSLTEQNY
                     DLQSKLGRFIRVMVSGNTQSNWISISESKIYGYKALSESCVNSQVSQITAAAPSSQIG
                     FPSSNVADNNLNTIWSNYGVGSSIQLDLGSSKNICSLDIAWHKGNERQNNFVVSTSQD
                     GKSYKTVLSTTSSGKSLSYEKYNIADTNARYIRITVNGNTQNNYASIAEIRALVPSSS
                     QSQIQCTDGHIQNAKTSASQSGFPGTNVLDDNLDTRWSNNGVGSWIQLDLGTVNKICD
                     ISIAWYKGN"
     gene            complement(1428..1967)
                     /locus_tag="VFX26_06540"
     CDS             complement(1428..1967)
                     /locus_tag="VFX26_06540"
                     /inference="COORDINATES: protein motif:HMM:NF012436.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin"
                     /protein_id="HEX5574171.1"
                     /translation="MRISPKTAKAINDQIAYEASATQAYVAIGSWCERTGYDGSATFF
                     FEQAAEENTHMLKFVHYLNNAGAKAIIPATEKPQGNFDSLESTFQVGLKSEQTVTKLI
                     NNLVEIVEREKDRATYSFLQWFVNEQIEEETLFEIILQKFEIIGRDKLAIYQIDQSLA
                     SIRSEIMAKGDSQQQQSAN"
BASE COUNT          731 a          498 c          422 g          888 t
ORIGIN      
        1 tcatttcctt tgtaccaggc aatactgatg tcacaaatct tgttgactgt ccctaaatca
       61 agttgtatcc atgaacccac accgttattg gaccatcgag tatccagatt atcatcaaga
      121 acattagtac caggaaatcc actttgacta gctgaagttt tagcattctg aatatgacca
      181 tcagtgcatt ggatttgcga ttgacttgat gatggtacca gcgccctgat ctcggctata
      241 cttgcgtaat tattttgagt atttccattt acagttattc ttatgtatct tgcattagta
      301 tcagcaatat tatatttttc atatgatagt gactttccac tactcgtagt tgataataca
      361 gtcttgtatg attttccatc ttgagaagtt gaaactacaa aattattctg tctctcattt
      421 cctttatgcc atgctatatc tagactacat atgttcttac ttgatcctaa atctagctgt
      481 atggatgagc ctacaccata attggaccaa atagtgttaa gattattatc agctacgttt
      541 gaagatggaa atcctatttg gctacttggt gcagctgcag ttatctgtga gacctgactg
      601 ttcacgcatg attcagacaa ggccttgtaa ccataaattt tagattcgct gatactaatc
      661 cagttgctct gggtgttacc actaaccata actctaatga acctacctaa cttggattga
      721 agatcatagt tctgttcagt taatgattta ccgtcacttt ttcctgagta aacattggta
      781 aatgatttgc catcttttga tattgatatt gcaaatgtgt ttacccgttc atttccccta
      841 tgccagttaa tacccacacc gcagattacg ttctctcggc ctaagtcgat ctgtatccat
      901 gagcccaaac ccaagttaga ccaccgtgta ttgagattct gatcaattgc atgagatggc
      961 ggatgcaaat tatcagctcc gctagcagta atgccattaa ctggaagctt tgaacaagta
     1021 ttagacgagc caaacgaatc agattgtcca tacacatgtg gagattgaac aagggcactt
     1081 gagaaaataa gaaccaggaa tgttacaaga aaaacacaaa gcttcaattg attgcctctc
     1141 catgcattac atgatgcaaa tttaattaaa taagttccca gtatggcata tatacacttt
     1201 atcaattata ttatgtcacg aaatcccttt ttatagtaaa ttgatgttca ttatttaatt
     1261 catagtaatc taaaaacttt tgtaaggcaa atccttgttg atccaagaca aggaacgcaa
     1321 ttattaaata caggcctata aatctgcaac ttatcgtatc caataaggag atcttcctca
     1381 ttcgaaaaga aatagtgtca aaaaatgttt aaagcatcgc tcagtagcta attagccgat
     1441 tgttgctgtt gagaatcccc tttagccatt atttccgatc taattgaggc caaagattgg
     1501 tcgatttgat atatcgctag tttgtctctc ccaattatct cgaatttttg aaggataatt
     1561 tcaaacaatg tttcttcttc tatttgttca tttacaaacc attgtaagaa agaatatgta
     1621 gcgcgatctt tttctctttc aacaatctct actagattgt taatgagttt tgtaactgtc
     1681 tgttcacttt ttaaacctac ctggaatgta gattctaatg aatcgaaatt accttgaggc
     1741 ttttctgtcg ctggaattat cgctttagcc cccgcattat taagataatg aacgaatttc
     1801 aacatatgtg tattctcctc agcagcttgt tcaaaaaaga aagttgcact tccatcatat
     1861 ccagttcttt cacaccacga tccgattgca acgtatgctt gagttgcaga tgcttcataa
     1921 gcaatttgat cattgattgc ctttgcggtt ttcggtgaga ttctcattgt aatattttat
     1981 acctcctcat atatctatat tcttggaatt ggtatgtgtt gtgttgttat ttatcggtta
     2041 actaacgttt ggatatctaa gtgttggtca tattcataaa gttgaattag taactccctt
     2101 ctatgaatta cttctgtttc ctcattagag tctcatcttt tccgtcaatg gaggttttat
     2161 gaatcataat tttccaaata ggattcgtca accagaagtg tagggctatc atgattcttg
     2221 ttcagaaatt ctatattagt ttatttaagt aacgatctta tctctgatta tttcccctgg
     2281 ctttctcccg catcagattc ctgctgatta gaacattcag tccaagttca taattgaaaa
     2341 gcaacatggc tagcgatata ctcaatcagt caagaccgct attatgatag atatcatcgc
     2401 ttactgtctc ttctggttac tagatcccag tcatattaga tattttttgc gttatctcac
     2461 tgattgatgt ccggatatcg gccttacttt gaaccttcaa tttcagaggt gagatcaagc
     2521 tcaggacttc atctgctga
//
LOCUS       DASUMD010000243         2228 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1536870, whole genome shotgun sequence.
ACCESSION   DASUMD010000243 DASUMD010000000
VERSION     DASUMD010000243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2228)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2228)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2228
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1536870"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(585..911)
                     /locus_tag="VFX26_06545"
     CDS             complement(585..911)
                     /locus_tag="VFX26_06545"
                     /inference="COORDINATES: protein motif:HMM:NF036395.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="luciferase family protein"
                     /protein_id="HEX5574172.1"
                     /translation="MKEQISSFIRSLPNVERKHDPMSEEAYFYGLRNFAHFHGPRHID
                     IRLSKPQQEEALRIRMAIPHQYAPQAGWVSCILETEEQADNTKRLIKQAYDTCVSLKT
                     SHKPAN"
     gene            complement(955..1311)
                     /locus_tag="VFX26_06550"
     CDS             complement(955..1311)
                     /locus_tag="VFX26_06550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574173.1"
                     /translation="MSIEQILLVEIEESKRWLSRENDDSTYKRDLTERIELINWVLKN
                     MKNPDIFICEIVEIGMNEIIDKINKTDSIFEADPLDSELRILDWILYQVCSNRKKVIF
                     KESPLFYFNKFVQIGR"
     gene            1429..1656
                     /locus_tag="VFX26_06555"
     CDS             1429..1656
                     /locus_tag="VFX26_06555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574174.1"
                     /translation="MSEERIGDKFLRKLYEKTVNNGIENIDREEIGKEIGIIDVQMDN
                     LIDELTSEGYIKKLGRTKIYLTDDGRKRVEI"
     gene            1787..2005
                     /locus_tag="VFX26_06560"
     CDS             1787..2005
                     /locus_tag="VFX26_06560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574175.1"
                     /translation="MVKNKKQIKIIHESAANYTFSNTGSTNIKREENADTANKTTSST
                     EKEIPRARSIHLRNSKIRQKNRIGAEQL"
BASE COUNT          781 a          372 c          387 g          688 t
ORIGIN      
        1 gagaaatatt gtgataaatg tgctgaagca attaaaaaga gttcacaaaa gcatgcaaat
       61 taaatttgca tcgtgtcgtc agtcacaatt agaggacaag cctaatagaa ttagttgaac
      121 ctattttgta aaccacctta agcgtatgaa acccgagtac gcagatggtt cgaattccga
      181 tgaaccctag acgattcgaa aattttaaag cttactaatc cattttatat tcaagaatcc
      241 cattttagaa ccgatagcgg cgtgggtacc gacggctcca gacccgtgat tacattattt
      301 gattatgttc ccgaagaaca gatgaaatta tttccttgaa aaaagtgacg atttcagatt
      361 gaaaaaagaa gcggtaatta atgattagta agtctcctgt atggtaaggg cttttttcgg
      421 cctgacctta ttatttgtct gtgactacgt tttcatcatg atgaatacaa gtgaaatctc
      481 tacaccaata acaaaaaccg caatttgggc ataatggctt tgagcgcgtt ggatgaaagt
      541 cggtgtaaca attaaagcaa ttcattacaa ttcccaattg aaaactagtt tgctggttta
      601 tgagaagttt tcagagatac gcaagtatca tatgcttgct taatcaatcg ctttgtattg
      661 tctgcctgct cttcagtttc taatatgcat gagacccatc ctgcctgtgg agcatactgg
      721 tgcggaatag ccatacgtat ccgcaaggcc tcttcttgtt gaggttttga tagcctgata
      781 tctatgtgtc gtggtccatg aaaatgggca aaatttctta aaccatagaa ataagcttct
      841 tcactcatag gatcatgttt tcgctcgaca tttggtaacg atcttatgaa actactaatt
      901 tgttctttca agctgagacc cattgctcat aaaagtatac tctttattgt ttatctacct
      961 acctatttgc acaaatttat tgaagtaaaa taatggagat tccttaaaga ttaccttttt
     1021 tctgttacta cagacctgat ataaaatcca atctagaatt cttaattcac tatctaatgg
     1081 atcggcttca aaaatagaat ctgttttatt tatcttatct ataatttcat tcattccgat
     1141 ttctacgatt tcacaaataa aaatatccgg attcttcata ttctttaaga cccagtttat
     1201 caattcaatc ctttctgtaa gatctctttt gtaagtggaa tcatcatttt ctctgctaag
     1261 ccatcgttta gattcttcaa tttctactag taaaatctgt tcgatagaca tagactaaat
     1321 taataatatt aagatttaag atagcaagcg actattaggg tgggagactg gtctactcta
     1381 tcttgaaata ctctaaacgt ataagcatca ttaagtcaat attccattat gtctgaagaa
     1441 agaataggag ataagtttct tcggaaactt tatgaaaaga cggtaaataa tggaatagaa
     1501 aatattgaca gagaggagat tggaaaagaa atcggaataa tagatgtaca aatggataat
     1561 ctgattgacg aattgacttc tgagggttat ataaagaaac taggtcggac aaaaatttac
     1621 ttaaccgatg atggaagaaa aagagtcgaa atataatatt tttagaaccg atagcgtcgc
     1681 gggtaccgac ggactgtata tgataaatta caggttttat aacattcata ctttaacata
     1741 aaactaaagt aattgttccg atattctaaa ttcaggatta ataaaattgg taaaaaacaa
     1801 aaaacaaata aaaataatac acgaatccgc tgcaaattat acgttttcga acactggttc
     1861 tacaaatatt aagagagagg aaaatgctga tactgcaaat aagaccacat caagtacaga
     1921 aaaggagata cctagggcgc ggtccataca tttgagaaac tcaaaaattc gacagaaaaa
     1981 taggataggt gccgaacaac tataacctca aataagaatg taagctagga tgtagagtac
     2041 atacagaaaa aaggaaactt taaagcttag cagttctttc ccatattcag aatcccaaat
     2101 tagaaccgat agcgtcgcgg gtaccgacgt ctgtgaatca aatttaatcc taatacctcc
     2161 ggattcccgt tgttaagtat attaatttaa tattaacgaa aaattatatc tgaaataatg
     2221 aatgattt
//
LOCUS       DASUMD010000244         4981 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_765066, whole genome shotgun sequence.
ACCESSION   DASUMD010000244 DASUMD010000000
VERSION     DASUMD010000244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4981)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4981)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4981
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_765066"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2494)
                     /gene="leuS"
                     /locus_tag="VFX26_06565"
     CDS             complement(<1..2494)
                     /gene="leuS"
                     /locus_tag="VFX26_06565"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004823 - leucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006429 - leucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HEX5574176.1"
                     /translation="MVENSVEKTPNVELNWARIGEKWRKRWAEDKIFETEPESHKKKY
                     FLTVAYPYPNSPQHVGHGRTYTLADVHARYKRMNNYNVLFPMGFHYTGTPIVSMSQRI
                     KSNDLELIETFQQIYKIPSEKISSFKEPKRIASFFHEEIKQGMNEMGYSIDWRREFTT
                     IDNGYSKFISWQFRNLKKKGLIVQGSHPVGWCPQDQNPVSQHDTVGDIEPELIEYVLV
                     KFKFEEQYVIPTATLRPETIFGVTNLWINPDIKYVIAQVNKEKWIITKEAARKLEFLN
                     ASVSIISEIDGSDLIGKSVFDETRRQLVPMFPASFVDPNNGTGIVMSVPAHSPYDYQA
                     LVDLKKDDNTLRKFAITVNIVPIKIIQTDAFPSNESSPAESILTRYSIRDQNDPKLEE
                     ATNKLYSEEFHNGVLLPNIDQIGNLSVIKARETIREKIISEEIGTTMYELKNVVICRC
                     GTPCVVKLLTNQWFINYGDDNWKKLAYELIENMEILPEEIRQEFTNVIDWLKERACAR
                     KSGLGTKLPWDNEWIIESLADSVIYMAYYLLSRHISNNLVLHKNEDMVLADNLNDNFF
                     DYVLLGKNDRDIVAKDSKISIQLLEKIRNEFLYFYPVDSRHSGRDLVPNHLAFFIFNH
                     AAIFPRDKWPKQIVVNGSVLMEGKKMSKSLGNIIPLRKAIDEYGADSIRLTMLASAEI
                     LQDSDFSLDLVKGIRSKLFEIYRTINTNLNIFTTSRNSFDYDDDLEDVWISSRLQHVI
                     LETTSAIEKFRIREALHNILYLMDNDLQWYEKRKLAKNKSISNNYLREFFETRIKLLS
                     PFAPYFCEEIWEIMGNHSYISLAQWPEINQSRI"
     gene            complement(2487..>4981)
                     /gene="alaS"
                     /locus_tag="VFX26_06570"
     CDS             complement(2487..>4981)
                     /gene="alaS"
                     /locus_tag="VFX26_06570"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HEX5574177.1"
                     /translation="IQRYPVVCRWREDLYFTIASIVDFQRVMNGKIVFEIPKNPLVVP
                     QMCLRFNDIENVGLTGRHYTSFCMVGQTCNADAPGGYWKDKCIDLDHSLLKDVLGIKS
                     EEITFVEDVWMGAGAFGNSLEYYVRGLELGNAVFTEFEGDEHNYRTLDNKIIDMGAGL
                     ERLSWITMGTPTSYDATFGPVFKKLVDVIGIDIDSKAEFLSRYFRIFSENYSNYQNDP
                     RILKTNIAKELGLSYEALEKIVLPFETLSIIADHTRTLLFGISDGSLPSNVGGGYNLR
                     IILRRTLALLARFGWNLNLEDIMDLHIEQLKSMYPELKEHKNDVRTIIQIESDRYSSS
                     KERMYSIANSVLMSKKRPGVEDLIRMYESDGITPDLLLETGVIEKIPPDFYLKLAELH
                     TSHESKQIPVIETVSGLKPTRLLYYEDGSIREFDAKILKILEGKYLILDKTAFYPRGG
                     GQEPDFGSIQGIKVTDVIKQNEIVLHKVQVPSKDHFLENKIVHGIVDNVRRRSITKNH
                     SATHILNSAARNSLGSWVWQNSAFKEEHYARLDITHHSALTKQEINQIERTANEVVQR
                     NLPIMINVFERSNAEEKYTFRIYQGGAVPSNNVRIVNIEGWDVEACGGTHVNKTGEIG
                     LIKILKTERIQDGVVRLEYVSGNNAFQYVQSQDSQLLHIAQSLGSSKEKVIESFDKVT
                     VENDLIKRKFKILVNRFSDNMAAIVSQKATKSKSGLKIYSIYDGEIGDEYYIALGEKS
                     IDIDPFLVYVALIQDQERIKIIVFVGEESRKIIKASRIAKEISLKLGGTGGGGTDKFA
                     QGGGKDKSKIHDCLKNLENLLTDILDSSEKNG"
BASE COUNT         1452 a         1009 c          754 g         1766 t
ORIGIN      
        1 aaattctcga ttgattaatc tctggccatt gagccaaact gatataggaa tgatttccca
       61 ttatttccca aatttcttca cagaaataag gtgcaaatgg tgacaataat tttatccttg
      121 tctcaaagaa ttctctcaag taattattgg atattgattt attttttgcc agctttcttt
      181 tttcatacca ttgtaaatca ttgtccatca agtataagat attgtgcaga gcttctctga
      241 ttctaaattt ttcaatagca gatgtagttt ccaaaataac atgttgcaat ctgcttgata
      301 tccaaacatc ttctagatca tcatcataat caaaactatt tcgagatgta gtaaaaatgt
      361 tcaaatttgt atttatagtt ctgtaaattt caaacaattt tgatctaatt ccttttacta
      421 agtcaagaga aaagtcagag tcctgtaata tttcagcgga cgccaacatt gtaagtcgga
      481 ttgaatctgc gccatattca tctattgctt tacgaagggg aataatattt ccgagtgatt
      541 tagacatctt tttaccttcc attagtaccg atccatttac aacaatctgt ttcggccatt
      601 tgtccctggg gaatattgca gcatgattaa atatgaagaa cgcaaggtga ttaggtacca
      661 aatctctacc ggaatgccta gaatctacag gataaaagta cagaaactca tttctaattt
      721 tttctagtaa ttgaatcgaa atttttgagt ccttagcaac aatatcccga tcgttctttc
      781 ctaaaagaac ataatcaaag aaattatcat tcaaattatc tgccaatacc atatcttcat
      841 tcttatgcaa gactagatta ttgctaatgt gtcttgataa taggtaatat gccatataaa
      901 taaccgaatc tgccaaactc tctataatcc actcattatc ccatggaagt tttgttccaa
      961 gaccgctttt tcttgcacat gctctctctt taagccaatc tataacatta gtaaattctt
     1021 gtcttatttc ttcaggtaga atttccatat tttcaattag ctcgtatgcc aattttttcc
     1081 aattgtcatc tccataattg ataaaccact gatttgttag taacttaaca acgcagggag
     1141 taccgcatct acatattact acatttttca attcatacat ggtcgttcca atttcttcgc
     1201 tgatgatttt ttcccttata gtctctcgag cttttatcac acttaagttc cctatttggt
     1261 ctatgtttgg caaaaggaca ccattgtgaa attcttctga ataaagcttg ttcgttgcct
     1321 cttctagttt agggtcattc tgatccctta ttgaatagcg tgtaagtata gattctgcag
     1381 gggatgattc atttgaggga aacgcatcag tttgaattat ttttatagga acaatattaa
     1441 cggtgatggc gaattttctc aaggtgttgt catctttctt taaatcaacc agagcttgat
     1501 aatcgtaagg tgaatgtgct ggaacggaca ttacaattcc agttccatta ttaggatcaa
     1561 caaatgatgc cgggaacata ggaacaagtt gtcttcttgt ttcatcaaac actgattttc
     1621 ctattaaatc agagccatct atctctgaaa ttatcgagac actagcattt agaaattcca
     1681 actttcttgc agcttcttta gtaattatcc atttctcctt gtttacttgt gcaattacat
     1741 attttatatc agggtttatc cataaattag taacaccaaa aatagtctct ggtcttaatg
     1801 tggcagttgg aataacatac tgttcctcaa atttaaactt cacaagcaca tattcaataa
     1861 gctctggttc gatatcaccc acagtatcat gttgactcac tggattttga tcttgaggac
     1921 accatccgac gggatgagat ccttgcacta ttaaaccctt cttcttgaga tttctaaatt
     1981 gccaggatat gaattttgaa tatccgttgt ctatagtagt aaattctcgc ctccaatcaa
     2041 tagaatagcc catttcattc attccttgct taatttcttc atgaaaaaag ctggctattc
     2101 ttttaggttc tttgaaactc gatatttttt cactaggaat cttgtatatt tgttggaaag
     2161 tctctattaa ttctaaatca ttggatttga ttctttgtga cattgacaca atcggtgttc
     2221 cagtatagtg gaaacccatt ggaaataata cgttataatt gttcatgcgt ttatatctcg
     2281 catggacatc agccaaagta tatgttcgtc catgtccaac gtgctgcgga gaatttgggt
     2341 aaggatacgc cacagttaga aaatactttt ttttatgcga ttctggttca gtttcaaata
     2401 ttttatcttc ggcccacctc tttctccatt tttctccaat tcttgcccaa ttaagttcaa
     2461 cattgggcgt tttttcaacc gaattttcaa ccattttttt cactagagtc taaaatatct
     2521 gttaacagat tctcaagatt cttcaagcaa tcatgaatct tgcttttatc cttacctcca
     2581 ccttgagcaa atttatccgt acctcctcct ccagtacctc cgagtttcaa tgaaatttcc
     2641 ttcgcaattc ttgatgcttt gatgattttt cttgattcct ctccaacgaa aactatgatt
     2701 tttattcttt cttgatcctg aataagtgca acatatacca aaaaaggatc aatatcgata
     2761 cttttttctc ccaatgcaat atagtactca tctcctattt caccatcgta aatgctatat
     2821 atctttaatc ctgatttaga tttagtcgct ttctgagaaa cgattgcagc catattgtct
     2881 gaaaatctat taacaagaat tttaaatttt cttttgatta gatcattttc taccgttacc
     2941 ttatcaaatg attcaattac cttctcttta cttgatccca aagattgagc tatgtgaagt
     3001 aattgagaat cctgtgattg cacgtactga aaagcattat tcccagaaac atattcaagt
     3061 cttactacac catcttgaat tctctcagtt tttagaattt ttattaaacc tatttcaccc
     3121 gtcttattta cgtgagttcc accacatgcc tcgacatccc acccttctat gttcactatc
     3181 cttacattgt tcgagggaac tgcgccgcct tgataaatcc taaatgtgta tttctcctca
     3241 gcattggacc tttcgaatac attaatcata attggtaaat ttctttgaac cacttcattt
     3301 gcggttctct ctatttgatt gatttcttgt tttgtaagag cggaatgatg agtaatatcc
     3361 aatcttgcat aatgttcctc cttaaaggca gaattctgcc atacccatga accaagactg
     3421 tttcttgcag cagaattcaa tatgtgtgtt gcactatgat ttttggttat agatcgtctc
     3481 cttacgttat caacaattcc gtggactatt ttattctcta gaaaatgatc cttggagggg
     3541 acttgtactt tgtgaagaac tatctcattt tgttttatta catctgttac tttaatccct
     3601 tgtatagatc caaaatctgg ttcctgtcct cctcctctcg gataaaatgc agttttatct
     3661 aaaatcaagt atttgccttc aagtattttg agaattttag catcaaattc tctaatagac
     3721 ccatcttcat aatacaataa tcttgtaggt ttgagcccac taacagtttc gatgacgggt
     3781 atctgttttg attcatgtga agtatgcagc tctgctaact ttaaataaaa atctggcggt
     3841 attttttcta taactccggt ttcaagtagt agatcaggtg taataccatc cgattcatac
     3901 atccttatca gatcttcaac acctggtctt ttcttggaca ttagcacgga attggcaata
     3961 gaatacatcc tttcctttga tgaagaatat ctatctgatt caatctgtat aattgtccta
     4021 acatcatttt tgtgctcttt taattcggga tacattgatt ttagctgttc aatatgtaaa
     4081 tccataatat cttctaaatt gagattccag ccaaaacggg ccagaagtgc aagagtcctt
     4141 cttaatatta ttcttagatt gtaaccacct cccacattcg aaggcaagga accatccgaa
     4201 attccaaaca ataatgtcct tgtatgatcg gcgatgatag atagtgtttc aaacggcagg
     4261 acaatttttt ctaaagcttc atacgataaa cctagttctt tagcaatatt agtttttaag
     4321 attctcggat cattttgata atttgaataa ttctcagaaa atattctaaa gtatcgagat
     4381 agaaattctg ctttcgaatc aatatcgata ccaattacat ctacaagttt cttgaatacg
     4441 ggtccgaaag tagcatcgta gctggtagga gttcccatgg tgatccatga cagtcgctca
     4501 agtcctgccc ccatatctat tattttgttg tcaagagtgc gataattatg ctcatcaccc
     4561 tcaaattcag tgaagactgc atttcccagc tctagtcctc gaacataata ttctaatgaa
     4621 ttaccaaaag ccccggcgcc catccagaca tcctcaacaa atgtaatttc ctctgactta
     4681 ataccaagga catccttgag gagagaatga tccaggtcga tgcatttgtc cttccaataa
     4741 cctcccggag catctgcgtt gcatgtttgg cctaccatgc agaagctagt ataatgtctg
     4801 ccagtgagcc caacattttc aatatcatta aaccgaagac acatttgtgg aacgacaagc
     4861 ggatttttag ggatttcaaa cacgattttt ccattcatta ctctctgaaa gtccacaatt
     4921 gaggcaattg taaaatacag atcctccctc caacgacata ccacgggata cctttgaatt
     4981 a
//
LOCUS       DASUMD010000245         5278 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_986277, whole genome shotgun sequence.
ACCESSION   DASUMD010000245 DASUMD010000000
VERSION     DASUMD010000245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5278)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5278)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5278
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_986277"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..463)
                     /locus_tag="VFX26_06575"
     CDS             complement(<1..463)
                     /locus_tag="VFX26_06575"
                     /inference="COORDINATES: protein motif:HMM:NF013197.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574178.1"
                     /translation="MLRGKNQKDNGKLANRTKDLLTVKWENNQVIMIDQTKLPAKLVY
                     VKYKKYEDVARAIERLVVRGAPAIGVAAAFGMSLAAISSKARTKKALLKDLKIAYNRL
                     RSTRPTAVNLVWALDQIMKEVYSKNELEDIKESIVHSSLNMATDDITTNKQL"
     gene            933..1667
                     /locus_tag="VFX26_06580"
     CDS             933..1667
                     /locus_tag="VFX26_06580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574179.1"
                     /translation="MSIKNEVIMKSNTIKNNSNKEAMQYNLFDNIIGYEDIKKLFFLS
                     FESQKPIHILLVGPPASAKTLFMLGCMKLERSYFTLGTHSTKSGMVDYLFEKRPRYLV
                     IDEIEHMPIKDQTVLLSLMETGIIAETKHMKTRNTQLKTWVFATTNETNHMLTPLLSR
                     FMVLHFKQYNFENFLDISIHMLGQEGIAKDIATEAASQVWHKMKSKDIRDCIKIAHLA
                     KTKTDVNWIVETLQKYSKTSNLTDKK"
     gene            complement(1810..2430)
                     /locus_tag="VFX26_06585"
     CDS             complement(1810..2430)
                     /locus_tag="VFX26_06585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEX5574180.1"
                     /translation="MSSEVNIRESPNHFIVLDAISRGMNNIDKISKVSKLPKTEVELI
                     VNDLVFQRLITTNEKRGFFGRKKIELKITDTGMNLLGNKKKELQDKVQEMQQYYDNGN
                     KTQLESLMDSNRAWMPMMLFSGIMNILFFTSMMSLMGLALNPMESSLTQGDANAENSG
                     NADTTSAGSDSSADTSGADSQAGSDTGGFDGGGFDGGGFDGGGFDF"
     gene            2648..3034
                     /locus_tag="VFX26_06590"
     CDS             2648..3034
                     /locus_tag="VFX26_06590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574181.1"
                     /translation="MAGTDNFGVEGGMGHRAIEWMNSYSKEKKMDFKAQLEGYQISSK
                     NFGDFEIISWSGNWSDARKIIIKSSSKLSMKVIESGYHQKDNLLLSFFGIGKEFGKVY
                     KKGNYIGAIVLGMRSGKWYVKSEKLG"
     gene            complement(3116..4336)
                     /locus_tag="VFX26_06595"
     CDS             complement(3116..4336)
                     /locus_tag="VFX26_06595"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEX5574182.1"
                     /translation="MSYTQFVSAQISTLENSTAQDPLSMPDLFTKVEKSVVQVTEVDN
                     SNEQLGSRLGSGFVYDNNGHVITNYHVVAPASNNNNGELQVTFLDGNVYSADLVGFDQ
                     FADLAVIKVKNITSDKLTPLPLANSSALRIGETVVAIGNPFGLSGSMTEGIVSGLGRL
                     LPSNENGENFAGTTSSFSIPNIIQTDAAINPGNSGGPLIDTQGRVIGINTAIFSNTGV
                     YSGVGFAIPSNTISKVATSLIQTGSYRHPYIGIVGVSLAPDLSKQLGLTQTKGFLVTS
                     ITEGSPAEKADLEAGSTTKTFNGREINTGGDIILKIDNREVTKIDDILAYLESQKQVG
                     DQVHLTILRDNAIKELDLVLAERPSPDKIDSSLNDFPNRLPPQNGDSNYPEELYDECV
                     NVAGKSFCDFLFKR"
     gene            4676..5014
                     /locus_tag="VFX26_06600"
     CDS             4676..5014
                     /locus_tag="VFX26_06600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574183.1"
                     /translation="MKKDESSITFLKYKNLTDMLKVILFSSQSALGLTPMLYHITVRQ
                     EEILFIETGALGGALVHYIVEKEKPSTKFIELRQLTGEYNFVEKIGNDTHSIYIPILE
                     LESTSIEFPN"
BASE COUNT         1709 a          957 c          875 g         1737 t
ORIGIN      
        1 ccaattgctt attagttgta atatcgtctg ttgccatgtt tagagaggaa tgaacaatcg
       61 actctttgat atcttcaagc tcattttttg aatatacttc cttcattatt tgatccaagg
      121 cccatactaa gttaacggca gtcggtctcg ttgatcttaa cctattgtag gcaattttaa
      181 gatctttgag cagagctttt ttagttcttg ctttactcga aattgcagct aatgacattc
      241 caaatgcagc tgcaacacct atggctggag ctcctctaac aactaatcgt tctatagctc
      301 tagcaacgtc ctcatatttc ttgtatttaa catatactag tttagcaggc aattttgttt
      361 gatcaatcat tatgacttga ttattttccc attttacagt caaaagatcc ttagttctgt
      421 tcgctaattt gccattatct ttctggtttt tgccacgaag cattagtgac ttgattgtta
      481 atgatgtcta taataattta cctagctaag atgatttgtc aggccaacaa taatgattta
      541 ctccaaccaa tagaagggtt aactgaataa tttcacttgt gtttgtgttt ataacgatct
      601 atcatagcat ctatcaatta atagggaacc ataaataata ggtactaata gttagcaagt
      661 atgtcattta tcagataccg tatgatgaga ttgaggaagt ttaccaaaaa taaattctac
      721 gttctagtca agtatctcct atttatctac ataagtttca agatgaaaat aggatggtat
      781 tgataaacca agttgagtaa ctaatttatc tagttggtac atcaagtcta cgacctaatt
      841 caattttcgt ctactaaatt agagtaatta gacatcaaga ttttgtagga atgtctataa
      901 tcaatctgat caaaatgtat catgaacagg acatgtccat caaaaacgaa gtaattatga
      961 agagtaatac cattaaaaac aattcaaata aagaagcaat gcaatataac ctgtttgata
     1021 acattatcgg atacgaggac ataaaaaaat tatttttctt gtctttcgag tcacagaaac
     1081 cgatacatat tttacttgta ggtccacctg catcagcaaa aacgttgttt atgctaggat
     1141 gcatgaaact tgagcgttcc tattttactc taggcacaca cagtacgaaa tctggaatgg
     1201 tcgactattt atttgaaaag cgtccgagat atttggttat tgacgaaatt gaacacatgc
     1261 caataaagga tcagacagtt ctcctgagtc ttatggaaac tggcataata gcagaaacaa
     1321 aacatatgaa gactagaaac acccaattga aaacatgggt ttttgctact acgaatgaaa
     1381 ctaaccacat gcttacacct ttactctcta gatttatggt gttacatttt aaacagtaca
     1441 attttgaaaa ttttctagat atatcaattc acatgcttgg gcaagagggt atagcaaagg
     1501 acatcgcaac agaggcagct tctcaagtat ggcataaaat gaaatcaaaa gatattaggg
     1561 actgtataaa aattgcacat cttgctaaaa ccaagactga tgtaaattgg attgtagaga
     1621 cgcttcagaa atatagcaaa acatccaatc ttactgataa gaagtgataa cttgcctagc
     1681 aaataattta atttagttac aactgaattc aaaaaattct tgcgttacac attccaattt
     1741 cacatttttc atcaagacag cttaattcgt tagtaattct attgccaatt aagtctgact
     1801 taatatgatc taaaagtcaa atccgccgcc atcaaatccg ccgccatcaa atccgccgcc
     1861 atcaaatccg ccagtatcac ttcctgcttg ggaatccgcg ccggaagtat cagcgctact
     1921 atcgctacct gcggaagtag tgtctgcatt gccactattt tcggcattcg catccccctg
     1981 agtaagagag ctttccatag gatttaacgc taatcccatt aacgacatca tagaagtaaa
     2041 aaacaggata ttcattattc ccgaaaatag catcatcggc atccatgctc tattagaatc
     2101 cataagtgat tcaagctgtg ttttgtttcc gttatcgtag tattgttgca tttcctggac
     2161 cttgtcctgt aattccttct tcttatttcc aagaagattc atacctgtgt cagttatttt
     2221 taattcaatt tttttcctac caaagaaccc tctcttttca ttagttgtta tcaatctctg
     2281 aaaaacaagg tcatttacta ttaattcaac ttcagttttg ggtaactttg acacctttga
     2341 tatcttgtcg atattattca ttcctcttga tattgcatcg agaactatga aatgattggg
     2401 actttcacga atatttactt cactggacat attgaattta tgcactgtag tttacttaaa
     2461 tcattcgttt ttgatgccgt gtttctatcg atttcttagt cctatataca gactcatatt
     2521 tgtacatgtt ttcactttat tgataatctg aagaacatat ttttattccc aatcaatatc
     2581 ctttttcagt ttgaattaat gatatttttg caaagtttaa aattattaat ctcaaacaat
     2641 tacataattg gctggaaccg acaattttgg agtcgaaggt ggaatgggcc atagggccat
     2701 agaatggatg aattcctatt ccaaggagaa aaaaatggat tttaaggcac aattggaagg
     2761 ttaccagatc tcatcgaaga acttcggaga ttttgaaatc atatcatgga gtggtaactg
     2821 gtcagatgca cgcaagataa ttatcaagtc aagtagcaaa ttaagtatga aggttataga
     2881 atcaggttac catcaaaaag ataatctgtt actttcattt tttggtattg gaaaagaatt
     2941 tggtaaggtg tacaaaaaag gtaactatat tggagctata gtattgggaa tgcgttcggg
     3001 aaaatggtat gtaaaatcag aaaaactcgg atgacgcaag atgatcttat taagtttcag
     3061 ggaatcgata atctgtagag caaatacatt gctatataat ccttgattgg taacattatc
     3121 ttttgaatag aaagtcgcaa aagctttttc ccgcaacatt gacgcactca tcatatagtt
     3181 cctccggata attactatct ccattctggg gtggaagtct gtttggaaaa tcatttaatg
     3241 atgaatcaat tttatcagga ctgggtcttt ctgccaacac caaatccaat tccttaattg
     3301 cattatctct gagaatggta agatgtacct gatctcccac ctgtttctgg ctttcaagat
     3361 acgccagtat atcgtcaatc tttgtaacct ctctgttatc gatctttaat ataatatctc
     3421 ctccagtatt aatttctctc ccattaaacg tttttgtagt agatcctgcc tctaaatcag
     3481 ctttttcagc ggggcttcct tcagtgatac tagttactag aaacccctta gtctgagtca
     3541 atcctaattg cttggataaa tcaggagcta gacttactcc aactattcca atatatggat
     3601 gacgatatga accagtttgg ataagtgaag ttgcaacttt gctaatcgtg ttagaaggga
     3661 ttgcaaatcc aactcctgaa tacacaccgg tattagaaaa tattgctgta ttaattccaa
     3721 ttactctacc ttgcgtatca atgagaggcc ctcccgaatt ccctggatta atagcagcat
     3781 cagtttgtat aatattagga atagagaatg atgacgttgt tccagcaaaa ttctctccat
     3841 tttcatttga tggcaatagc ctacccaagc cacttactat tccttcggtc attgaacccg
     3901 acaatccaaa gggatttcca attgcaacaa ctgtttcacc tattcttaag gcagatgaat
     3961 tggctagggg cagcggtgtt aacttatcgg aggtaatatt ttttacctta atgacagcca
     4021 aatctgcaaa ttgatcaaat cctacaagat cagcggaata aacattaccg tccaggaaag
     4081 taacttgcaa ctcgccgtta ttattgttcg aagctggggc tacaacgtga taatttgtaa
     4141 ttacatgacc attattatcg tagacaaatc ccgaacccag tcgcgatccg agctgctcat
     4201 tagaattatc aacctcagtt acttgtacta ctgatttttc aacctttgta aaaagatctg
     4261 gcatagatag tggatcctga gcagtagagt tttcaagtgt tgatatttgt gctgacacaa
     4321 actgagtata agacatgaaa gcatagtagc ttatgagtgc gctaaatata aaaaatgaga
     4381 ttaataataa taatttcttt tcagtcattt tcttaatatc atgttagtac taacaatcct
     4441 atatttgaat catagtcgtc ccgttcaaat actgtcttct aataggcatt gtaatcactg
     4501 ccacttttct ctcgatatca cgacttttgc aataatatgt caatgagaat ctgtaatcct
     4561 taaccttgaa ttagtttcat tttgtttttg attgcaatct tttctcaaaa caatttcgta
     4621 atcattgcaa tccaaaacga tacaatgaaa ttcaagtatc ttttttatca ttgatatgaa
     4681 aaaggatgaa tcctcaataa catttctgaa atacaagaac ttgaccgaca tgttgaaagt
     4741 aatattgttc tcttctcagt ctgcattagg attaactccc atgctttatc acataacggt
     4801 taggcaagaa gaaattctgt ttatcgaaac aggcgcccta ggaggtgcat tggttcatta
     4861 tatagtcgaa aaggaaaaac caagcacgaa attcatagaa ttaagacaat taactggaga
     4921 atacaatttt gttgaaaaga taggaaatga tacacactct atttatattc caatactgga
     4981 gctagaaagc acatccattg aattcccaaa ttgaaacttg gaattaaatt gcaataagtt
     5041 aatgggatct gaataaatcc gtagatggca tattttagat tcattttttg gcaacttagg
     5101 tacaatccaa tgaaatgctc ataattagat actattgatt ggtaacttga aatttagatt
     5161 atcaaaaaat caccatgagc ttatgacaca aaacaagctc tattggagat ttttgaaacc
     5221 tatttgcatt tgaatatgga cataaatctt ggtagtaatc aataatgcat catgtttg
//
LOCUS       DASUMD010000246         4299 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_987024, whole genome shotgun sequence.
ACCESSION   DASUMD010000246 DASUMD010000000
VERSION     DASUMD010000246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4299)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4299)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4299
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_987024"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..491)
                     /gene="cobA"
                     /locus_tag="VFX26_06605"
     CDS             complement(<1..491)
                     /gene="cobA"
                     /locus_tag="VFX26_06605"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004851 - uroporphyrin-III
                     C-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0019354 - siroheme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HEX5574184.1"
                     /translation="MERGTGKVEQSKVGPRGKVYICGAGPGDRDLLTIKAAKLLSECD
                     VILYDRLVNKGILNMTSSYSKKVYVGRESGDPTTNQMITNELMLKYANDGKKILRLKG
                     GDPFIFGRGGEEAEFLSSKNIKYEIVPGVSSLNGAAVYAGIPLTHRDYSSSVIILTGH
                     ESI"
     gene            complement(452..1405)
                     /gene="hemC"
                     /locus_tag="VFX26_06610"
     CDS             complement(452..1405)
                     /gene="hemC"
                     /locus_tag="VFX26_06610"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004418 - hydroxymethylbilane synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HEX5574185.1"
                     /translation="MNSFRVATRGSKLALIQTEILANSLRKLFPTVKCELVKIKSSGD
                     INKNKVLFSVNEKGVFEKEVDKAVLEEKADFAVHSIKDIPTDIDDELVIASILKREKP
                     NDVLIGKSKSTLEILEPNSHVGTSSLRRAVQIKRKNPKVKVIPIRGNVESRVRKCIDG
                     PFDALVLAEAGLKRLHMSNLIVQRFNYLDFVPAPGQGAIGIVCRKDNKKTVNILQKIE
                     DKPTRYAVNAERSLIHHLNAGCRFPVGAIALPNLRTNRIVMHASVFSADGSQSLNVKK
                     SDVITNASQVGTDLANDLLSKGAADFAHEWREALEKWNSQK"
     gene            complement(1398..2666)
                     /locus_tag="VFX26_06615"
     CDS             complement(1398..2666)
                     /locus_tag="VFX26_06615"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HEX5574186.1"
                     /translation="MSASLFDRAKEIIPGGVNSPVRFYEPYPFFASYGRGSKIITHEH
                     DTLIDYCLGYGAIILGHAYFDIINAVKTQLDKGNIFCVPTENEVKLAELIIEMIPNME
                     MVRLMNTGSESTMHSIRLARAFTKKKKVVKFDGCYHGAYDYVLVSPGSSASTASFDGN
                     LEESMRQTLLLPYNDISALENLVKLNNDIACIIVEPVLANMGLIIPEEDYLSKLRRIC
                     EREDIVLIFDEVVTGFRLSLGGASEYFGVVPDIMTLAKSIGNGFPLSALVGKKKIMAL
                     LSPKGTVFQGSTYAGNPISVTAGIATLEKLKDVKNDLYPKLSRFSDRLTNGIRDHLKD
                     LKFEASTNNISSMFQLFFTDEKIKNASNIRKSNDLLYKKLFHELLKSGIFIPPSQFET
                     CFISYSHDDEDIDKTVESFAKALKKVKEIE"
     gene            complement(2707..3714)
                     /gene="hemB"
                     /locus_tag="VFX26_06620"
     CDS             complement(2707..3714)
                     /gene="hemB"
                     /locus_tag="VFX26_06620"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004655 - porphobilinogen synthase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HEX5574187.1"
                     /translation="MNQNEDFEFNGFPKVRLRRLRRTPAIRDLLQETRLSVKDLVYPV
                     FIQEGINEPKEIELMPGIFRIPIKNLVKNIQELCDLGVKTFLVFGIPKLKNDRATGAY
                     RKDGIVQESVKTLKKNFGEKIVTITDVCLCQYTSHGHCGIIRNKVADNDESLKILDRI
                     ALSHAEAGADFVAPSAMMDGQVKSIRKALDNSSFNNVGIIGYSAKLSSNLYTPFRDAS
                     HSTPEFGDRKSYQMPFHNTNEALQEITMDIEEGADIIMIKPALPYLDLIYKTRQTTLL
                     PVCAYSVSGEYSIVKAAALEGWVNEDEIVMEFATSIKRAGADIIISYHTKKIAEILNS
                     S"
     gene            complement(3701..4156)
                     /locus_tag="VFX26_06625"
     CDS             complement(3701..4156)
                     /locus_tag="VFX26_06625"
                     /inference="COORDINATES: protein motif:HMM:NF012947.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574188.1"
                     /translation="MMIFDLSNPRTVDDKIATISGIKLVNIDQIAEIVDRNLKRRYEE
                     IRMAEKMIQSGMQSMDLLFRKIKAEPFVVSIFKIVDEVRNRELSKAARMLGIKKGMKE
                     FEIMEQLSFSIVEGILSTPMNNFRKEFGNTEKNEEVLNIVSRIFNYEPK"
BASE COUNT         1222 a          869 c          652 g         1556 t
ORIGIN      
        1 tcaattgatt cgtgacctgt tagtatgatg acagaagatg agtagtccct atgtgttaat
       61 ggaatgcccg catatactgc ggcaccattt aaagaagata caccaggcac tatttcatat
      121 tttatatttt tggatgatag aaattcagct tcttcgccgc cacgtccaaa aataaatgga
      181 tcacctccct tcaatctaag aattttctta ccatcattgg catactttag cataagttca
      241 tttgtaatca tttgatttgt agttggatct ccggactccc tgccaacata tactttcttt
      301 gaataggaag aagtcatgtt aagaattcct ttgtttacta atctgtcgta aagtataaca
      361 tcacattctg acagtaattt ggcagctttt atcgttaata aatctcggtc acccggacct
      421 gctccacaaa tatacacttt gcctcttggt cctacttttg actgttccac ttttccagtg
      481 cctctctcca ttcatgtgca aaatctgctg ctccctttga tagtaaatca tttgccagat
      541 ccgttccaac ctgcgatgcg tttgttatca cgtctgattt ttttacattc aatgattgtg
      601 aaccatctgc agaaaaaaca gatgcatgca ttacgattct atttgttctt aaattaggta
      661 atgctatggc acctacggga aatctgcaac ctgcgttcaa atggtgtatc aaagatcgtt
      721 cagcattgac agcatatctt gttggtttgt cctcaatctt ttgtaatatg ttgactgtct
      781 tcttgttatc ctttctgcat acaattccaa ttgctccttg tccaggagca ggaacaaaat
      841 ctaaatagtt aaacctctgc actattaagt tactcatatg aagccttttt agcccagctt
      901 ctgctagaac aagggcatca aacggtccat cgatgcattt tcttacgcga ctttcaacat
      961 taccccttat tggaatcact tttacttttg gattcttcct ttttatttga actgctcttc
     1021 ttaaactact tgtacccaca tgagaatttg gttctaatat ttctagagtt gattttgatt
     1081 ttccaatcaa gacatcattt ggcttttctc gtttcaatat tgacgcaata actaattcat
     1141 catcaatatc cgttggtatg tctttaatac tgtggactgc aaaatcggcc ttctcttcta
     1201 gtactgcttt atcgacttcc ttttcaaaga ctcccttttc gttgaccgaa aaaagtactt
     1261 tgttcttatt gatatctccg ctcgatttta ttttaacaag ttcacatttg actgtgggaa
     1321 atagtttccg caaactgttc gccaatatct cagtttgtat tagcgcaagc ttgcttccac
     1381 gagtagcaac cctgaaacta ttcaatttct ttcacttttt tcaatgcttt tgcaaatgat
     1441 tcaacggtct tgtcaatatc ttcatcatca tgcgagtagg aaataaaaca agtctcaaat
     1501 tgtgatggag gaatgaatat cccggatttt agtagttcat ggaataattt cttataaagc
     1561 aagtcatttg attttctaat attagaggca ttctttattt tttcatcagt aaagaaaagt
     1621 tggaacatag acgagatatt attagtactt gcttcaaatt ttagatcttt taaatgatcc
     1681 cttattccat ttgttagtct atcagaaaaa cgtgaaagct ttggatataa atcatttttt
     1741 acatctttca atttttctaa tgttgcaatt cctgcagtaa cagaaattgg atttccagca
     1801 taagtacttc cttgaaatac tgttcccttt ggtgataaca atgccattat cttctttttt
     1861 cccactaagg ctgaaagtgg aaacccattc ccaattgatt ttgcaagtgt cataatgtct
     1921 ggtaccaccc caaaatattc tgaggcacca ccgagcgaga gtctaaatcc agtgacaact
     1981 tcatcaaaaa ttaaaactat atcttccctt tcacatattc tccttagttt gctaagataa
     2041 tcttcctctg gaattatcaa acccatattg gccaaaactg gctcaactat tatacatgcg
     2101 atatcattgt tcagtttaac caaattttct agtgcgctta tgtcgttgta tggtaatagc
     2161 aatgtttgtc tcattgactc ttctaaattg ccgtcaaatg aagcggttga agcacttgag
     2221 ccgggactaa ctagaacgta atcgtaagca ccatgataac atccatcaaa tttaacaacc
     2281 ttttttttct ttgtaaaagc tcttgccagt cttatagagt gcattgttga ttctgatcca
     2341 gtgttcatta gtcttaccat ttccatattg ggaatcattt caataattaa ttcagcaagt
     2401 ttgacctcat tttctgtggg aacacaaaaa atattgccct tgtccaattg tgtttttaca
     2461 gcatttatga tatcgaaata tgcatgtcct agaatgattg cgccataccc aaggcaataa
     2521 tcaattagag tatcatgttc atgtgtaata atttttgaac ctcttccata tgaggcgaaa
     2581 aaaggatacg gttcatagaa acgaaccgga ctattaacac caccggggat tatttctttt
     2641 gctctatcaa atagagaagc agacaaacat tgatatcata attttgtaac tgttataatt
     2701 gtatctttag gagctgttta atatttctgc aattttcttt gtgtggtatg atattatgat
     2761 gtcggctcct gctcttttta tagaagttgc gaactccata actatttcat cttcattgac
     2821 ccacccctcg agtgctgcag ctttaacaat agaatactcc cctgagacac tgtaggcaca
     2881 tactggtaat aatgtagttt gtcttgtttt gtaaattaga tcaagataag gcaaagccgg
     2941 ttttatcatt atgatatctg ctccttcttc aatatccatc gttatttcct gcagtgcttc
     3001 gttagtattg tgaaatggca tttggtatga tttcctgtca ccaaattcag gggtagagtg
     3061 tgatgcatct ctaaatgggg tatatagatt tgaagataat ttagccgaat atccaattat
     3121 gccaacattg ttgaaactac tgttatccaa tgcttttctg atactcttta cttgaccatc
     3181 catcattgca gaaggggcaa caaaatcagc ccctgcttcg gcatgactta gagcaatccg
     3241 gtccagaatt ttcaaacttt catcattgtc tgcaacttta tttcttataa tcccgcagtg
     3301 accatgagaa gtatattgac acaggcatac atcagttatt gttacaattt tttcaccaaa
     3361 atttttcttt aatgttttca ccgattcctg aactatgcca tctttacgat atgcacctgt
     3421 tgctctgtcg ttttttaatt ttggaattcc aaaaaccaaa aatgtcttta cccccaaatc
     3481 acacaactct tggatatttt tgactagatt ttttatcggg atcctaaata ttccgggcat
     3541 caactctatt tcttttggtt cattaattcc ttcttgaata aaaacaggat agacaagatc
     3601 cttgactgat aatctagttt cttgcagtaa atcccttatt gcaggtgttc gtcttaatcg
     3661 tctaagccgt acttttggaa atccattgaa ttcaaaatcc tcattttggt tcataattaa
     3721 aaatccttga tactatattc aaaacttctt catttttttc tgtatttcca aattcttttc
     3781 tgaaattatt cataggtgta gatagtatac cttcaactat tgaaaaagac aattgctcca
     3841 tgatttcaaa ttccttcatt cctttcttaa tgccaagcat cctagctgct ttcgataatt
     3901 ctctatttct tacttcgtct actatcttga atattgatac tacaaatggt tctgccttaa
     3961 tctttctaaa aagtagatcc atcgattgca ttccactctg aatcattttt tctgccattc
     4021 tgatctcttc atatctacgc ttcaaatttc tatcaactat ttctgcaatt tgatctatat
     4081 tgactaattt tattccagat attgttgcaa tcttgtcatc cacagttctt ggattagaaa
     4141 gatcaaatat catcattcac tcatttttct ttctacactt gaaaattcga tcataggtaa
     4201 taagatagta cggtgctgtt gtagaaacaa agatgatatc agtcttatca aaattatgga
     4261 gagcatcttc aaatcttact gggataccgc caacagtac
//
LOCUS       DASUMD010000247         5585 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1541142, whole genome shotgun sequence.
ACCESSION   DASUMD010000247 DASUMD010000000
VERSION     DASUMD010000247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5585)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5585)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5585
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1541142"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            360..1892
                     /locus_tag="VFX26_06630"
     CDS             360..1892
                     /locus_tag="VFX26_06630"
                     /inference="COORDINATES: protein motif:HMM:NF012686.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574189.1"
                     /translation="MVSLDWYGVGVIAFLAASLVVGTLTSRLVKKSSRRFMIAGKSLP
                     LFFVGTMLAAQAVDVNSSLGNVSLVYQFGIWAGAAIPIGLGICLILTGAFYGKKLNKM
                     SMLTLPDFYYRRFGAGAEGISGVLMMISFIVLVAGNFAASGYILTAVLHIDFFWAMLI
                     AALVVLVYTFAGGLFSSAYTDIFQIYLAIGAFWAAFLFFALGFAGVDFGTILGNAPPE
                     YIDLSGLTDIGNGALINWAGIMALALGDIVALDFMERVFAAKDGKTARRGAFMGGGLT
                     LFTVIPTTMMGIVALYFLPNLADPFTAYPELAINHVPFAIGIALLMGVLGASMSTANG
                     GLLAISSVMSRNIIQRDILKKWFKKPGMDDRKLLRTTRIFTIPMMVAAFILGYLLPQP
                     GVYLILAFDIVFAGAWAPLTLGLFWKKANLPAAITSLVLGSGLRLLLFFVIPIELAGL
                     DTMIPPVVSFVAFIIVALATQKKHPGTERHGVIDYVPPEQDVVMGEDLKGYTSPSGLK
                     FA"
     gene            1885..2475
                     /locus_tag="VFX26_06635"
     CDS             1885..2475
                     /locus_tag="VFX26_06635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574190.1"
                     /translation="MLNWRQEATNNEQAILKRPSYFLLFPKKPQIRNIEDVKEQITKI
                     ISSQRKQIESNLKTTVSEVQNFLSEISEFNDRWTRLPTIYRIAWISTSENDTVEKVTF
                     KENIELPNLDHDLELIMKMLNHMREEKNLKVTNMPLFIHPDEISIAQKEDRFPYRNIR
                     IISQIAVVFQKGRIKYVGLVFDRNYVLLQDRLINIF"
     gene            2617..2880
                     /locus_tag="VFX26_06640"
     CDS             2617..2880
                     /locus_tag="VFX26_06640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574191.1"
                     /translation="MSTMLSLSKKLSHELSNLDIDEGVRIESTKTKNRKLFINKRPSG
                     CFVAELVYSNPIDMTEISFFVDIRHISKLIDKIFGKEYSVTIY"
     gene            complement(3093..3386)
                     /locus_tag="VFX26_06645"
     CDS             complement(3093..3386)
                     /locus_tag="VFX26_06645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HEX5574192.1"
                     /translation="MTSRAETRRASNEILIGKKPLMTYVTATLVQLANEPTVLVKARG
                     KSITRAVDVAQIIVKRMDNMGYKIGHVKIGSQLIQSEDGKERNVSTIEVQISR"
     gene            4121..4435
                     /locus_tag="VFX26_06650"
     CDS             4121..4435
                     /locus_tag="VFX26_06650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574193.1"
                     /translation="MTLEDKDIIQVDATVIIGVMILLTLSIGFDSSINAQKNASITRL
                     MITLAIIAPFTASAVLAILTNLTNKYTEQLKKTSIIIMAVGFGYLIFVIAAFMASIYS
                     LI"
     gene            complement(4552..4779)
                     /locus_tag="VFX26_06655"
     CDS             complement(4552..4779)
                     /locus_tag="VFX26_06655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574194.1"
                     /translation="MEYPIIVEKDGIKIKPENMIVDKMYYCIYDNKVYIFYKDEENLT
                     HCYEVDDPQVVQEIIDNPNNLEDILLKHSKE"
     gene            complement(4884..>5585)
                     /locus_tag="VFX26_06660"
     CDS             complement(4884..>5585)
                     /locus_tag="VFX26_06660"
                     /inference="COORDINATES: protein motif:HMM:NF012956.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="discoidin domain-containing protein"
                     /protein_id="HEX5574195.1"
                     /translation="KYVTYTCLIEVDKPEVQEVALDSSNISTMSTDDNNIMSTDMLNS
                     NNNDDNSYQSFESNDPDSSGFGQVSPTEEHVVNQYDNLVNSTNGQHHEELNFPNSEQQ
                     STKTCEYNEIPIMDVQTDTNNVNNTNGNSTESHKPRWTALDLGQEQYICGLKVSFVNV
                     DNEIKFFTLEFSNDGKKYTAAEYYSSTGTNSPSEIYDLKEGPIKARFIKITELDMTES
                     IAWISDLIVLGNAQL"
BASE COUNT         1705 a          937 c          995 g         1948 t
ORIGIN      
        1 accaaagtca aaaggttctc caataatggc tacatccggt ctaacgcttt ttagctcttc
       61 gtgacttctt atccaaggca gcttcagaaa cgttggaata cccacaaaaa ttggctcatc
      121 gttacctttg taagaattac cataaaattc catacccata cttagtccat tcttgtaagg
      181 tgctatattt tttaaatatt tctgaaccca agctgaattt caccaaataa aactacatat
      241 ttattcgtgt tatcaggttt agaaataatt attgcaaatt ttttaataat tgtaaatttc
      301 ttagctattt ctctactttc tgttaaatcc ttatatatat tgtaaaataa caagtgtgga
      361 tggtatcact tgactggtat ggagtcggtg ttattgcatt tttagctgcg tctttggttg
      421 ttggaacatt aacttcaagg ctagtaaaga aaagtagtag aagattcatg attgctggca
      481 agagtctccc gctttttttt gtgggtacaa tgctagctgc ccaagcggta gatgttaact
      541 cttctcttgg caatgtttct ctagtgtatc aatttggcat ttgggctgga gctgctatcc
      601 ctattggact tgggatatgc cttatcctca caggagcatt ttatggtaaa aaattgaaca
      661 agatgtcaat gcttactctt cctgactttt attacagaag gtttggagca ggagcagaag
      721 gtatctcggg agtacttatg atgattagtt ttatagttct tgtagctggt aactttgctg
      781 ccagcggata tattcttact gccgtattac atattgattt cttttgggca atgcttatag
      841 cggcactagt tgtgctagtc tacacatttg caggtggtct cttttcttca gcgtacacag
      901 atatattcca aatatatcta gcaataggtg cattttgggc tgcttttcta ttttttgctt
      961 taggatttgc aggagtcgat tttggtacta tcctgggtaa tgcaccacct gagtatattg
     1021 atctctcggg gctaactgat attggaaatg gggcgctcat taattgggca ggaattatgg
     1081 ctttggcgtt gggcgacatt gtagcgcttg attttatgga aagagttttt gcagcaaaag
     1141 atggcaagac agcacgaaga ggtgcattca tgggaggagg attgacatta tttacagtca
     1201 ttcccacaac tatgatgggt atagtagcac tatatttcct tccgaatttg gctgatccat
     1261 ttacagcata tcctgaattg gctataaatc acgtgccatt tgcaatagga attgctctat
     1321 tgatgggagt tttgggagct tctatgtcaa cggcaaatgg aggattgctt gcaatatcta
     1381 gtgttatgtc aaggaacatt atacaacgag acatattgaa aaaatggttc aagaaaccag
     1441 gcatggacga tagaaaacta ttgagaacga caaggatatt taccattccg atgatggttg
     1501 ccgcatttat tctaggctat ttattgcctc aacctggtgt ttatctcatt ttggcctttg
     1561 atatagtgtt tgctggcgcg tgggctcctc ttactttggg tttgttttgg aaaaaagcaa
     1621 atttgccagc tgcaatcacc tctttagttt tgggatctgg ccttagatta ttattattct
     1681 ttgttatccc catagaactt gctggccttg atacaatgat accaccagtc gtatcgtttg
     1741 tggcatttat catagtagct ctggcaacac agaagaaaca tcctggaacg gaaagacatg
     1801 gtgttataga ttatgttcca ccggaacaag atgtagtaat gggtgaggac cttaaaggct
     1861 atacaagccc aagtggtttg aaatttgctt aattggcggc aagaggcaac gaataatgaa
     1921 caggcaattt tgaagaggcc atcttatttt ttgttgttcc ctaaaaagcc acagataaga
     1981 aatattgaag atgtaaaaga gcaaattacc aaaataattt caagtcaacg aaaacaaatt
     2041 gaatcaaatt taaaaacaac cgtttcagaa gtccaaaatt ttctttctga aatttcagaa
     2101 ttcaatgata ggtggaccag actccccact atctatagaa ttgcgtggat aagtacatct
     2161 gagaatgata ctgttgaaaa agtcacgttt aaagaaaata ttgaattacc taatttggat
     2221 catgatttgg aacttattat gaaaatgtta aatcatatgc gagaggaaaa aaatctaaag
     2281 gtaactaaca tgcctttatt tattcatcct gatgaaatct caattgcgca aaaggaagat
     2341 agatttcctt acagaaacat aaggattatt tcccaaattg cggtagtatt tcagaaaggg
     2401 agaataaaat atgtcggatt agtatttgat agaaactatg tcttgctcca agatagatta
     2461 ataaatattt tctaatattc gttcatatta caattttatc gataattgga tgattatttc
     2521 ctcgttttaa gaaatgtttt gaaaacaata tgcgagtgag tctgcccatt tataaagcca
     2581 aggttaaaat tcaaagatat ttagtataga atcagtttgt ccactatgtt atcgctttca
     2641 aagaaattat cacatgaatt gtcaaatctc gatattgatg aaggtgtgcg gatagagtca
     2701 accaagacta agaataggaa gctattcata aataagagac catctggatg ttttgttgca
     2761 gaattagtat attcaaatcc tatcgacatg acagaaatta gtttttttgt agacattaga
     2821 cacataagta aactaattga taagattttt ggaaaagaat attctgttac catttattga
     2881 attagaagat tgattaatat acacttaatt aaatgagtgt ggaatttttc taatatgtat
     2941 atattcaaaa tcagtaccca gatcagtacc tagatcagta tccaaatcca agttgttgta
     3001 gttttaagag atccttgatt cctctgaggt cttattgttc gcggtttatt tcttagctaa
     3061 actaactaaa atataatcta aaatctaaat ttttatctag atatttgaac ttctatggtt
     3121 gaaacatttc gttccttgcc atcttcagat tgaatcaatt gtgaacctat tttcacatga
     3181 ccaattttgt atcccatatt atccatgcgt tttacaataa tttgtgctac gtctacagcg
     3241 cgtgtaatac ttttccctct ggcctttaca agaacagttg gttcatttgc taattgaact
     3301 agggttgctg tcacataggt catcaaaggc ttcttgccta tcaaaatttc attactagct
     3361 ctccttgttt cagccctaga agtcatgcta taagtgcata tcacaaaatc ctaattaaag
     3421 tgtatataaa gcctataaaa aaaataaatt tttgatataa tgcgctaagt aaactcaggt
     3481 aagtcagctt cttatactta attgcccaat tgtagttcag gtttcaactt cgatgccatc
     3541 aaccggtgag gcactctgca tagcgagtcc tagtctcacc ggtgctcaaa ctattttata
     3601 ttttaatgac ttcaatgaga atgtgaatgg tttggactgg taggacttgc agaatttgac
     3661 acatagtcct accagtagac attaaaccat tttatattat gttgctcaac gtaagacatc
     3721 aactccagat gcgtcggtgg gatttttttt catacttcga tttcacccac cgatgtttta
     3781 acttttttat aatttaatat gtcattgaat tgtagcgtaa agtcgcaacc attttactgg
     3841 tgggaaactg gcttgctatc tacgattcat cccaccagtt ttataatatg tagatcgtaa
     3901 tttagtacgc ctaacacgtt ctctggtgga atacttggcc atgaaaaact cgacccacca
     3961 gtgttttatc ttttagaatc gcaagatcaa tcataaatat tcataatatt cgaattcatt
     4021 ttcagatttt taatgtttga ccaagtaaaa tggaacccaa gtcgatctta tacatatgga
     4081 atgttttaaa tatgatcgat aaacattcat tgttttcata ttgactctgg aggataaaga
     4141 cattattcaa gtggatgcaa ctgtgattat aggagttatg atacttctta cactttcaat
     4201 aggattcgat tcatctatta atgctcaaaa aaacgcgagt attactaggt tgatgatcac
     4261 actggctata atagcaccat ttactgcatc cgcagtctta gcgatcttga caaacctcac
     4321 gaataagtac acagagcaac ttaagaaaac atcaataata ataatggcag ttggattcgg
     4381 ttacttaatt ttcgtaattg ctgcttttat ggcatcaata tattccctta tttgagtaac
     4441 tgccactttt gcgatataaa actacataaa agtagacgta tcgttctact cagaactaat
     4501 aattaaatga attatatagt ttgtatagtc gccatattag ttgttgaaat ctcactcttt
     4561 agaatgtttt agaagtatat cctccaaatt atttggattg tcgattattt cttgaacaac
     4621 ttgcggatca tctacttcat aacaatgtgt gagattttct tcatccttat aaaaaatata
     4681 gactttgtta tcataaatac agtaatacat tttatcaacg atcatattct caggtttgat
     4741 ctttataccg tctttttcaa caataattgg gtattccaac gtttttacta tctatttgag
     4801 aaaataaatt ctatacggaa ttcaggataa ggatcgttca ataagtattg gttaactaga
     4861 tttttactta ttcaacgggc ttttcatagt tgagcgtttc ccaaaactat aagatctgat
     4921 atccatgcaa tggattcagt catatccaat tcagttattt tgataaatcg cgctttgatt
     4981 ggaccttctt ttaggtcata aatttctgaa ggtgagttgg tcccagttga tgagtaatat
     5041 tcagctgcgg tgtatttttt gccgtcattt gagaattcaa gtgtgaagaa tttaatctca
     5101 ttatctacgt ttacaaaact tactttaaga ccacatatat attgttcttg gcctagatcc
     5161 aatgcggtcc atcttggttt atgtgattcg gtagaattcc cgttggtgtt gttaacattg
     5221 ttggtatcag tttgaacatc cattatgggg atttcattat attcacaagt ctttgtcgac
     5281 tgttgttcac tattagggaa atttaattct tcatgatgtt gtccatttgt tgaattcacc
     5341 aaattatcat actgatttac cacatgttcc tctgttggag atacttgtcc aaaaccagat
     5401 gaatcaggat cgtttgattc aaaactttga tatgaattat catcattatt attactattt
     5461 agcatatctg tactcataat attattatca tcagtactca tggtactaat attactcgaa
     5521 tccaaggcta cttcttgtac ttcgggttta tcaacttcta tcaagcatgt ataggtaaca
     5581 tattt
//
LOCUS       DASUMD010000248         3221 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_877997, whole genome shotgun sequence.
ACCESSION   DASUMD010000248 DASUMD010000000
VERSION     DASUMD010000248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3221)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3221)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3221
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_877997"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1474
                     /gene="polX"
                     /locus_tag="VFX26_06665"
     CDS             <1..1474
                     /gene="polX"
                     /locus_tag="VFX26_06665"
                     /inference="COORDINATES: protein motif:HMM:NF006375.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="DNA polymerase/3'-5' exonuclease PolX"
                     /protein_id="HEX5574196.1"
                     /translation="EFSKLRGVGPRTMKILYEKLKITSISELEKAASEGKISKLKGFS
                     KTKEENILKTVRLSKQNKRRYLLGDVYPLIKKIEIRLTRQDTVIRCVVVGSFRRMRET
                     IGDIDILVSTEEPEKVIDFFVNMPEVVETKGKGRAKAFVKLRNGIGVDLLVVPEESFG
                     SASQYFTGNKDHNISLRNLAISMDLHLNEWGLYNKEGKKIAGNNEQEIYEALQLQYIP
                     PEIRENCGEIEYFSKHRDARLELVDYSDLKGDLHTHSEITDGTMSIYDMAVHARKKFG
                     LEYIAITDHTKSLRLANGLDELQLLDQINNIEQLNDTVNENSIGDSNTNFRILSSAEV
                     NILKDGTLDISNNILDKLDIVGASIHSNFSLSKEIQTERLIKAAKNPSVDILFHPTGR
                     LINKREGYAIDIEKIIEAACETRTVLEINSNYNRLDLRDEHIRMAIENGVKLAINSDA
                     HHPVHFAYLLFGIGQARRAWAKKIDIVNTLKVDSLLKSLK"
     gene            complement(1577..1996)
                     /locus_tag="VFX26_06670"
     CDS             complement(1577..1996)
                     /locus_tag="VFX26_06670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEX5574197.1"
                     /translation="MANFHTSKKINAPVSEVWKVLSDIDREPEFWHGTKSIKNISKSG
                     NIVEREVVIAFKNSVCKEKVTIVPMKSITTDITEGPLKGKKVIVINPDGDRTSVVDVE
                     WDIRLSGFMGIFSKMVKKHILAGTNDALNRISKEVEK"
     gene            complement(2063..2527)
                     /locus_tag="VFX26_06675"
     CDS             complement(2063..2527)
                     /locus_tag="VFX26_06675"
                     /inference="COORDINATES: protein motif:HMM:NF024864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupredoxin domain-containing protein"
                     /protein_id="HEX5574198.1"
                     /translation="MKARPNDLLMITFLTAGLLLLLPIGIKQTMGQDDDNNDIATTNA
                     NSLTGNNTIILNPSEVNGTYRWVNNSGGINPTLDITMGNEYRIKINNPTDEEHELIIE
                     NTENSKVASSEEIEPGKNTEFKFKTEETGELNYYCEYHPETMKGIIKIIEPM"
     gene            complement(2961..>3221)
                     /locus_tag="VFX26_06680"
     CDS             complement(2961..>3221)
                     /locus_tag="VFX26_06680"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX5574199.1"
                     /translation="INKGAYALIISDLRMPGINGTDLVHKIKKENPLVRTLLMTAFEV
                     DDNVFEEYVKNNIIDGFLQKPVKLRDLRSEVLKQLNIYKSIK"
BASE COUNT         1094 a          531 c          557 g         1039 t
ORIGIN      
        1 tgaattttcc aaattgaggg gagttggtcc caggacgatg aagatacttt acgagaaatt
       61 aaagatcacc agcatttctg agttagagaa agcagcatcg gaaggaaaaa tttcaaagtt
      121 aaagggtttt tcaaagacta aggaggaaaa catactcaaa acagttcggc tgtcaaaaca
      181 aaataaacgt agatacttgt tgggagatgt atatccactg ataaaaaaaa tagagatcag
      241 attaacaaga caagatactg taattcgatg tgttgtagta ggttctttca gaaggatgag
      301 agaaactata ggggatatcg atattttagt ctctacagaa gaaccggaaa aagtgattga
      361 cttttttgtc aacatgcctg aggttgtaga aaccaaaggc aagggaagag caaaagcatt
      421 tgtaaaactt agaaatggaa taggtgttga tttgctcgtg gttcctgaag aaagtttcgg
      481 atccgcttct caatatttta ctggaaacaa ggatcataat atttcattac gcaatttagc
      541 aatttcaatg gatcttcatc ttaatgaatg gggtctgtat aacaaagaag ggaaaaaaat
      601 tgcgggaaac aacgagcaag aaatttatga agctctccaa cttcaatata ttccacctga
      661 gattagagaa aattgtggtg agattgagta cttttctaaa cacagagacg cgcgattaga
      721 actagtagac tacagtgatc taaagggaga tcttcacacg catagtgaaa ttacagatgg
      781 tacaatgtca atatatgata tggctgtaca cgcaagaaaa aaatttggat tagagtatat
      841 tgccattact gatcatacaa aaagccttcg tttagcaaat ggtttggatg agctccaact
      901 attagatcaa atcaataaca ttgaacaatt aaatgatact gtgaatgaaa actcaatagg
      961 tgatagtaat actaatttca ggattttgag ttctgctgaa gttaacatac ttaaagatgg
     1021 tacccttgac atatctaaca acattcttga caaactagat atagtaggag cttcaataca
     1081 ttcaaatttt tcattgtcca aggagattca aacagagaga ctcatcaagg cagcaaaaaa
     1141 cccaagtgta gacatactgt ttcaccctac aggcagatta ataaacaaaa gagaaggcta
     1201 tgcgattgac atagaaaaaa taattgaagc tgcatgcgaa actagaactg ttttagaaat
     1261 caattccaat tataataggt tagatttgag ggatgaacat atccgcatgg cgattgaaaa
     1321 tggggttaaa ctggcaataa attctgatgc acatcatcct gtccattttg cttacctttt
     1381 atttggaata ggtcaagcaa ggagggcatg ggcaaaaaaa attgatattg tcaatacttt
     1441 aaaagttgat tctttgctaa agtcactaaa gtaagacaag agatcctatc aatattctaa
     1501 aaaatctagc taagaggaaa agaattcaat ctgtatttag agtccttcag agcaattttc
     1561 ctgaacattg aggtgcttat ttttccactt cctttgagat tctattcaac gcatcgttag
     1621 tacccgcgag aatatgcttc ttaaccatct ttgaaaaaat acccatgaaa ccagacagtc
     1681 gaatatccca ctctacgtca acaacactcg tcctgtcccc gtccgggttg attacaatta
     1741 cttttttacc ctttagcggc ccttccgtaa tatctgtcgt aatagacttc attggcacta
     1801 ttgtaacttt ttctttacat actgaattct tgaaagcaat aacaacttct cgttccacta
     1861 tatttccaga tttgctaatg tttttaatcg atttagttcc atgccagaat tcaggttctc
     1921 tatcgatatc tgataagact ttccaaactt ccgaaacagg agcgttaatt ttttttgatg
     1981 tgtggaagtt agccatacct taagcggaac gcatggcaat atatgaattt gtaataatct
     2041 gaatattaga ttgtactatt tcttacatag gctcaattat tttaataatc cctttcattg
     2101 tctcaggatg atattcacaa tagtaattta attcacctgt ttcttctgtc ttaaacttaa
     2161 actcagtatt ctttccaggc tcaatttcct cactagatgc tacttttgaa ttttccgtat
     2221 tttctataat caattcatgt tcttcatcag tgggattatt tatcttgatt cgatattcat
     2281 tacccattgt aatatctaaa gtcggattaa tcccaccgga attgttaacc catctatatg
     2341 tcccatttac ttcagatggg ttaagaataa ttgtgttatt gcctgtgagt gaattcgcat
     2401 ttgtagttgc aatatcatta ttgtcgtcat cctggcccat agtttgttta attcctatag
     2461 gaagaagtaa gagtaatcca gcggtcaaga aagtgatcat taaaagatca ttaggtcgag
     2521 ctttcataat gatagtgcca agggtatact taattaattt tctttaaaat ttcacatttg
     2581 aaatccatca ttgaaactat tgcataaatt acaagattag gagacaagat ggaaactaca
     2641 aatttctcca atttacagta gacaatttcg tttcaataca cattatcatg tttcaatatc
     2701 aaggaaacga tatttataat ataataagat acgattaacg gagtatgatt catagttgct
     2761 ctgcataaaa gaatgatttc tattctagag tgccggataa aatcattcat tataattaat
     2821 taacattatt tgacaaaatg atcgtttatt agatttttca ttaaagaact atccggaaga
     2881 gagttttgaa taggaatttg caagttaaat tagacaagta aacttgtcga tacatatatt
     2941 ccgctaaatg agagtgagat ctattttata cttttgtaaa tattcagttg tttaaggacc
     3001 tctgaacgca gatctctcaa ctttacaggt ttttgaagaa aaccatctat tatattattc
     3061 tttacatatt cctcgaatac gttatcatcc acttcaaatg cggtcataag taacgttctt
     3121 actaagggat tctccttttt tattttgtga actaaatctg tgccattgat ccctggcatt
     3181 cttaaatctg agattatgag tgcataagca cctttgttaa t
//
LOCUS       DASUMD010000249         5547 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_990135, whole genome shotgun sequence.
ACCESSION   DASUMD010000249 DASUMD010000000
VERSION     DASUMD010000249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5547)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5547)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5547
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_990135"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..495
                     /locus_tag="VFX26_06685"
     CDS             <1..495
                     /locus_tag="VFX26_06685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574200.1"
                     /translation="RMDPFVDEYSNALSNISKGSLTKLLNGTTREYKVDDITIYATVD
                     LMIDNEMIINFVPVSKLPEYPHPNDLLYTNASMFIFDIQGGFIVYFTPEGKFVEFSVS
                     ESKRMFEQVVRRARILSLLLKEKKTPVVEPSELCFSCKYFQRCFQQKESEHLVDILGI
                     GKKK"
     gene            complement(688..1275)
                     /locus_tag="VFX26_06690"
     CDS             complement(688..1275)
                     /locus_tag="VFX26_06690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574201.1"
                     /translation="MGKKIIVSATILAVISIIIYSTFLNSTFLTDNISKLGLLNMKFT
                     EASIFNQDALKEAIPPELSIKDLRAEIMDDNTGNFSIIFNVYNPNNGTVIFESISYNV
                     YSNSTRIVSGDIGNRPEGFVDSQDSIFPVIGNGTLILKDKKIIETGNNLNLSQILRNN
                     ELSGFLVNGSYFFKQTGSFQSTGGEQSFSINYTQP"
     gene            1410..1928
                     /locus_tag="VFX26_06695"
     CDS             1410..1928
                     /locus_tag="VFX26_06695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574202.1"
                     /translation="MFIGARRAILIGAIGAIVAFIVLFPAIPDLLRGGSELRDVTVSL
                     ESIAIENTSNINNTIPLRVTFEILNKDVKALSTSKIEYAVNANNTHLGNGLLSFEDIP
                     PNGRPQLYPNAPTTLQSIFVLSRTSSNSELFDKIHNDKFVANFTEWNVNGTAQIDSAF
                     TIYPVTFNSDLR"
     gene            complement(1943..2383)
                     /locus_tag="VFX26_06700"
     CDS             complement(1943..2383)
                     /locus_tag="VFX26_06700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEX5574203.1"
                     /translation="MSQIVNLPRSMYKNKHELFEQVFQAILKSGEDGVFQTEICKEFS
                     LDSRDGSRLAGNLEKQSLISREKILHKGRWTYKLIVKKSAIAEYNRKPIRIECVEGAP
                     CFSCAYQHSCSSEDEASPYSPAKCVWLEDWIVAGFEKGYMKNEK"
     gene            complement(2992..4374)
                     /locus_tag="VFX26_06705"
                     /pseudo
     CDS             complement(2992..4374)
                     /locus_tag="VFX26_06705"
                     /inference="COORDINATES: protein motif:HMM:NF021523.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2252 domain-containing protein"
     gene            complement(4662..>5547)
                     /locus_tag="VFX26_06710"
     CDS             complement(4662..>5547)
                     /locus_tag="VFX26_06710"
                     /inference="COORDINATES: protein motif:HMM:NF012861.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005247 - voltage-gated chloride channel
                     activity [Evidence IEA];
                     GO_process: GO:0006821 - chloride transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HEX5574204.1"
                     /translation="VFLTGSVGSFVSEKLKLQKDDVQVLVYSAIAGGFGGFFGSPVVG
                     AVGAIEYMYIKELDLNRHLIPGLIAAAVGYGVYFAILHTSYLGIYSFPNFASLRLVDL
                     VWALLVGVIAGVIGIVFKVIFGIMNKAFGRLNKRPVGRAIIGGVIIGLIGSFLPLTLY
                     SGQDQLLQIIHNPATFGIGILLLMMLVKILLTSTSFASGFEGGPVFPLLFIGGTLGLA
                     LSEILTFIPQGVGVLAGMAGVACAAFPLPLTITLLLGLMGGQTDLLPVIAIGAVTGFI
                     VSKALTPLLPKQGKQSAE"
BASE COUNT         1660 a         1104 c          996 g         1787 t
ORIGIN      
        1 aggatggacc cttttgtaga tgaatattca aatgccttga gcaatatatc caaaggttca
       61 cttacaaagt tgttaaatgg aacaacaaga gagtataagg ttgatgatat tacaatttat
      121 gctactgtcg atttaatgat agataatgaa atgataatta atttcgtacc agtttctaaa
      181 ctacccgaat acccacatcc aaatgacctt ctctatacta atgcatcaat gtttattttc
      241 gatatccaag gcggtttcat tgtttacttt actcctgaag gcaaatttgt tgaattcagt
      301 gtttccgaaa gtaagagaat gtttgagcaa gttgtaagaa gagcgcgaat cttgtccctc
      361 ttgcttaagg aaaaaaagac acctgttgta gagccaagcg agttatgctt ttcatgcaag
      421 tattttcaaa gatgttttca gcaaaaagaa tcagaacatt tggtggacat cttgggaatt
      481 ggaaagaaaa aatagtgtca agagacctgt ttttcttccc ttgatctcct agtcacttga
      541 ttaatccttt ttgttctaac accgaataaa attccagtga atattacaaa aactcctgtc
      601 gtaatgacat acatcgagaa tacttctgac atatcgtcat tgatttatat cattaacatt
      661 taattttttc taaacaactc tcgcgtatca tggctgagtg tagtttatac tgaatgattg
      721 ttcgcctcct gttgactgga agctacctgt ttgtttaaag aaataactac cattcaccaa
      781 gaatcctgag agttcattat ttcttaaaat ttgggagagg tttaaattgt tgcccgtttc
      841 gattattttc ttatccttta gaataagggt gccgtttcca ataactggaa aaatactatc
      901 ttgagagtct acaaaccctt cgggtctatt gcctatgtcc cctgagacaa ttcgtgtaga
      961 attagagtac acgttgtatg aaatcgattc aaatatgacc gtaccgttat ttggattata
     1021 gacattaaag ataattgaaa agtttccggt attatcatcc ataatttctg ctctgagatc
     1081 cttgattgat aattcggggg ggattgcctc tttgagtgcg tcctggttga aaatactggc
     1141 ctctgtgaat ttcatattga gcaaccccaa ttttgaaata ttgtcagtta gaaaagtgga
     1201 atttagaaat gtagaataaa taataattga tatcactgca agaatggtag cagacacaat
     1261 aatctttttc cccattatct tcaggattcc tataatcaaa agattatttt agtctatttg
     1321 ttatcaattg gccaggatat tagattctca ctcctccatc aattaggtat ctggactaag
     1381 attatattta cgactaaata atgctgatta tgtttattgg ggccagaaga gctattctta
     1441 ttggcgcaat tggtgctatc gtggctttta tcgtattatt tcctgctatt cctgacctgc
     1501 taagaggtgg tagtgaatta cgagatgtaa ctgttagtct tgaaagtatt gcaatcgaaa
     1561 acacgagtaa cattaacaat accatcccct tgagagtaac ctttgagatc ctcaacaagg
     1621 atgttaaagc tttatcaact tctaaaatag aatatgctgt taatgcaaat aatactcatt
     1681 taggtaatgg actactttcg tttgaagata ttcctccaaa cggcaggcca caattgtatc
     1741 caaatgctcc tacaacactt cagtcaatat ttgttctgag ccggacaagt tctaattcag
     1801 aattatttga caagatacat aatgacaagt ttgtggcaaa ctttacagaa tggaatgtta
     1861 acggaacggc ccaaatagat tctgcgttca caatctatcc ggttactttc aacagcgatc
     1921 taaggtaaca aaaatagagt atttattttt cattcttcat gtagcccttt tcaaaaccgg
     1981 ctacaatcca atcttccaac cagacacact ttgccggact atatggactt gcttcatctt
     2041 cagaagaaca cgaatgttga taagcacaac taaagcatgg agctccttca acacattcaa
     2101 ttcgtattgg ctttctattg tattcagcaa tggccgactt ctttactatt agtttgtatg
     2161 tccatctacc cttgtgtaat atcttttcgc gtgaaataag tgattgtttt tcaagattac
     2221 ccgctaacct tgatccatct ctgctatcga gtgagaattc cttacaaatt tcagtttgaa
     2281 aaacgccatc ttctccgctt tttaatattg cctgaaatac ttgctcgaac aattcatgtt
     2341 tatttttata catacttctc ggaagattaa caatttgaga caaaagatag atttgtatca
     2401 agctaataat ataaaaatct tggcattatc tatccaatct ctagtcaaaa ttgagggata
     2461 ttgacatttg ctctctcaaa ttagaaattt ctaaatccgt attgataatt tggacctaat
     2521 tagaaaagtc tcataaacgt ttcacaattt gaaaacgatc cgcggtgtta tctttgatca
     2581 attctcatta ttcttcaagt ctgaactcca actaagtctg gaattttttt gtataaatat
     2641 tgcggtcacc gggatttgaa cttaccatgt atgggaattc acctacgaat ttgtaataag
     2701 acttattgat attacctagt tatccgaaaa aactactata agttaaatta gttactttct
     2761 actagaactt ttgttcaatt cattacaata tatctcaatg gattttctaa ctaaaacctt
     2821 tgatgagcta tgtggactat gggttgtggt taaatgtcta atatatgtaa ttttctgagc
     2881 gttctaatgt aatgactaaa agacaataaa agacgatatg aacagtacta acaaacagta
     2941 acctaatcat cgtagaaaaa cttcctgact tttatttttc tcataatgtt tttaaatctc
     3001 taaatcttta aggcctgatt cggttgtctt tgcccgcaga cgcccagagc gaacagctac
     3061 cttgaacgct ttaaaatcaa gttcgacctg atctgcgtag ctcttagcat actgttccaa
     3121 cgcatcatca aatttgtctt ttgatcccaa ataccccgtt atcatttctg cgtctcccac
     3181 ctttgcatgg gctcttgcca gagcccaacc gcacattgtt gcgtaattta gaagagtctg
     3241 aggcttgaag gtttcaattt gggctgaaac tttcatatca tggagttgac gaacatagta
     3301 atcatgtcct gaatcagagc ggaaccaacc aagaaatatg tcgcttgcag cttgcataag
     3361 acgttgtcca tgtacaacgc gatagccctg attctcaaac cgactctttt tatctggatt
     3421 gtccaatatt gatctgcgag cttcctttgt ttggagaaac agtggatcct taccatcagc
     3481 aagaaacaaa ctgacaaggc aacgtgtccc aacactgcct atgccaacaa ccttaattgc
     3541 agtgtccaca atgcgatagt gatcaaataa cttttgtttg tcctcctaca gtgatgcctt
     3601 gtaatcatcc aaatatctgc ctagtctttc caggtattgg ttagttttgc ggaaatggta
     3661 gatacttggt ggttcatcta atatcattaa gtgtcctttt acagcccttg tgatcttggg
     3721 aaatagtgtt tctgacgttc tggatgctgc ccgtgtttcg actttacgca aacggtccac
     3781 aaagtccttg tcattgcgga aaaactcaag aaggttttca atggatattt ttgcatacca
     3841 tctctcaaga atactctgtc ccgcaaattc agacatccga attcgatagg agtacgtggc
     3901 tgatctaact gcctcatctt ctatgttttt agaaaagccc aattcccttg cagccagggc
     3961 aaagctgact acaagccttt tcatgtccca ttcccacggt ccaggaaagg tctcatcaaa
     4021 atcatttatg tcaaaagcaa aattccgttc tggtgtggca aaacccccga agttcaacag
     4081 atgacaatca ccacacgctt gaactattat ccctgatatg ggtgagttta gtaggtctct
     4141 ggtttggatg attgcagcgc ctcggaagaa tttgaaaggt gattctaaca ttcgctgata
     4201 tcgtatggca acaagacttt caattctgcc cttgtttgaa gcctctatta gatttattgg
     4261 attccatgat cgcaaggaag gcgtccactc ggcgtgtcta ctgcgcgaac atttttcccg
     4321 aaggtctttg cctagttgca gtcttttttc tcttgtgaga ttttcacgat ccatttctat
     4381 agatatcttt ttagttggat ctaatttttt attttttgct ttttatctat attagttgtg
     4441 aatttgtggc ctttctgaga tttattattt catcacagct ctcatcatta tgaaagaaag
     4501 cattataata attactacgg taacactatt gcttaaaatt gttaccatga agatgattta
     4561 tataattaat gtcttcgatc tttttatttg aaacgattaa agctaaaata tagtttttga
     4621 cttagatcgt aggctatgat gactgtgttg atttatcgtt gctactcagc tgattgtttg
     4681 ccctgttttg gaagtaatgg agtgagtgcc ttggacacta taaaacctgt tactgctcca
     4741 atcgcaatca ctggcaaaag atcagtttgt cctcccatga gtcctagcaa gagagttatg
     4801 gttaatggaa gaggaaatgc agcacatgcc acaccagcca tccctgcaag cactcctacg
     4861 ccctgtggga taaacgttag aatttctgat agtgccagtc ctagcgtacc tcctataaat
     4921 agtaacggaa agacaggacc cccttcaaaa cctgaggcaa acgacgtgct tgtaagcaaa
     4981 atcttgacga gcatcatcag cagtagtatt cctataccaa atgttgcagg gttatgaata
     5041 atttgtaaca actgatcttg gcctgagtaa agtgttaatg gaaggaacga accgattaag
     5101 ccgataatta ccccgcctat gatagcgcga ccaacaggac gtttgttaag ccgtccaaaa
     5161 gccttgttca taatgccaaa tatgactttg aacacgatgc cgattacccc cgctatgaca
     5221 cctactagca gtgcccaaac cagatcaacc aaacgaagag acgcaaagtt gggaaagctg
     5281 tatatgccta gataggatgt atgcagtatt gcaaaataga ctccataacc aacagcggct
     5341 gcaatgagtc ctggtatgag gtgtcgattt aaatcaagct ccttgatgta catgtactcg
     5401 attgcaccta ctgctccaac gactggcgag ccaaagaagc caccaaatcc tcctgcaatg
     5461 gcactgtaga ctaatacttg tacatcatct ttctggagct tgagtttttc agagacaaag
     5521 cttccaacgc tacctgtcag aaaaaca
//
LOCUS       DASUMD010000250         2791 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1211295, whole genome shotgun sequence.
ACCESSION   DASUMD010000250 DASUMD010000000
VERSION     DASUMD010000250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2791)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2791)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2791
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1211295"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            71..772
                     /locus_tag="VFX26_06715"
     CDS             71..772
                     /locus_tag="VFX26_06715"
                     /inference="COORDINATES: protein motif:HMM:NF020014.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574205.1"
                     /translation="MRIITTGSSSIDDILGGGIRTGLITNIFSDSREARSSFCYSLCV
                     NAARLYTDSSVIFGDTQGFFRPEKILSYIKEKQESHSILHRIRRMRILSTNVQMVLVN
                     YALNLNPILVIIDNFSYLFLNEKKKSLPVQIRLRKHLHDLAINALHNDIAIVITNTIF
                     SKRENKDSVEDIFQKKIVSFNELMNNTISNLTHVGLELKTVKVDESRYSARLLKPLAS
                     TKSYFTVRPDGFHDC"
     gene            1125..1454
                     /locus_tag="VFX26_06720"
     CDS             1125..1454
                     /locus_tag="VFX26_06720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTPase"
                     /protein_id="HEX5574206.1"
                     /translation="MDKLEKLIEMQRDLASMLSSPRYPSKTEERISFLCTAITHEAIE
                     LQRLTNWKWWKNPTKFDSEEAKEELIDIWHFVLQATIELDMTPDDIVQYYSKKNRINK
                     KRKKMNY"
     gene            complement(1448..1936)
                     /locus_tag="VFX26_06725"
     CDS             complement(1448..1936)
                     /locus_tag="VFX26_06725"
                     /inference="COORDINATES: protein motif:HMM:NF016124.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574207.1"
                     /translation="MIYRQIENCIGEICKFLIPIKQEYYKGNGSKIAICTLSSIKLLT
                     EVSNDVSLMNNVGIVGRLLSENKGIDKIINYCIANKELVHLVVCGKDGHGHRPGDSII
                     ALSENGITREGKIIKSKSPYPYLDSSYEDVETFRDRVTIHNLIEEMDLNRIKSYVDGI
                     VQ"
     gene            complement(1965..2366)
                     /locus_tag="VFX26_06730"
     CDS             complement(1965..2366)
                     /locus_tag="VFX26_06730"
                     /inference="COORDINATES: protein motif:HMM:NF013412.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEX5574208.1"
                     /translation="MKGVTFRRGEIKFLRSNEICRIATCNNNLPHVTPVSYIFDKGKF
                     YFATDYNTLKYANLNKNNRISLVVDTTENNKNKAVVTRGITTFIHKGRKFQNLYEMFH
                     NKFDWVKNDPWKEGEAPFIEVIPKTKVSWGL"
     gene            2513..>2791
                     /locus_tag="VFX26_06735"
     CDS             2513..>2791
                     /locus_tag="VFX26_06735"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: protein motif:HMM:NF014614.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008817 - corrinoid adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HEX5574209.1"
                     /translation="MVIESSSNDGIVIVYTGSGKGKTTASLGVGLRAIGHGLRVCMVQ
                     FIKGEWHYGELNSIKKLEPDFELIVAGKGFIGIIDDDHAFEEHVRAAKT"
BASE COUNT          957 a          467 c          466 g          901 t
ORIGIN      
        1 aagatcgaca ataaaaagtt tctcccaaga tctcttactt tgtatataaa taattataga
       61 gtttagtttt atgcgcataa tcacaacagg gtcatcatca attgatgata tactgggagg
      121 tggaattaga acaggcctaa tcaccaatat cttttctgat tcaagggagg ccagatccag
      181 tttctgctat tcattatgcg tgaacgccgc aagactctat acagattcat ccgtaatatt
      241 tggagataca caaggatttt tcaggccaga aaaaattctt tcgtatataa aggaaaaaca
      301 agaatcacat tctatacttc atcgaataag aaggatgaga atactgtcaa caaacgttca
      361 aatggttctt gtcaattatg ccttaaatct aaatcctatt ctggtgatta ttgataattt
      421 tagttacttg tttttaaacg aaaagaaaaa atcccttccg gtacaaatcc gacttagaaa
      481 acatttacac gatctcgcta taaacgcact tcataatgac attgcgattg taattactaa
      541 cacaatcttt tcaaaaagag aaaataagga ttcagtagag gacatttttc aaaaaaaaat
      601 tgtttcattc aacgaattaa tgaataatac catatcaaat ctcacacatg tgggtttgga
      661 actaaagaca gtgaaggttg acgaatcaag atactctgct aggctgttga aacctctagc
      721 atctaccaaa tcttacttta cagttagacc ggatgggttc catgattgtt gatactaact
      781 gtagcatgga tagaaatatc atgggaaatg ttatggatta ttgtagtttt ctagatattt
      841 atacaaattt gaccgaatac tcaaatatca agctaataag aattatattt taacattcaa
      901 taattatatt aatttactaa aaattacata aataacgatt aagtatcata aaaatcacat
      961 tttatttaca ttggcagaaa catttattaa tattttttta ttttatatca taaaaaggtg
     1021 ctaatggaga acttccatat ctatttaaat cgataggaag cacgactcca ttccatcttc
     1081 atggtaggtt aaaatctata taaaacaatt tttatgtttg gtaagtggat aaactagaaa
     1141 aattaattga gatgcaaaga gacctggcct ccatgttatc atcaccaaga tacccttcga
     1201 agactgaaga gagaatttca tttctctgca ccgcaattac acacgaagct attgaacttc
     1261 aaagattgac aaattggaaa tggtggaaaa atcccaccaa atttgactcc gaagaggcaa
     1321 aagaagaact catagatatt tggcattttg tacttcaggc aacgattgaa ttggacatga
     1381 cacctgacga catagtccag tattattcta aaaagaacag gataaacaag aaaaggaaaa
     1441 agatgaacta ttgaactatt ccgtctacgt aggactttat gcgattcaga tccatctcct
     1501 cgattaagtt atgaatagta acacgatctc taaatgtctc cacatcttcg taggatgaat
     1561 ctagataagg ataagggctt tttgatttga tgattttacc ttctcttgtg attccattct
     1621 ccgataatgc aattattgaa tcaccaggtc tatggccatg gccatctttg ccacatacta
     1681 ctaaatgtac aagttccttg tttgcaatac aataattgat gattttatca attcctttgt
     1741 tttccgacaa tagtctacca actataccaa cattattcat caaactaaca tcgtttgata
     1801 cttcagttaa taatttgata ctggataggg tacatattgc aatcttactt ccattaccct
     1861 tatagtactc ctgtttgatt ggaattagga atttgcatat ttctccaata caattttcaa
     1921 tttgcctgta aatcaagatc aactcactga attgaaccct aatctcataa cccccaacta
     1981 accttagttt tgggaatcac ttcgatgaat ggcgcttctc cttctttcca tggatcattc
     2041 ttcacccagt cgaatttatt atgaaacatt tcgtacaaat tttgaaattt tctacctttg
     2101 tgtataaatg tggttatacc tcgagtaact actgccttgt tcttattatt ctcggttgtg
     2161 tctacaacca aggatattct attgtttttg ttcagattag catatttcaa ggtgttgtag
     2221 tctgtggcaa aatagaattt tcccttatca aaaatatatg aaacgggagt tacatgtgga
     2281 aggttgttat tgcatgttgc gatcctacaa atttcattgg aacggagaaa tttaatttcc
     2341 cctctcctaa aggttacacc tttcatattt ataacgataa taaatgcaat ttattatttt
     2401 ttagaatggg tggatagatt gtgtattaat ggacttaaaa atcaaccaat gatacaattt
     2461 gaataatatc taagtagcca aatgatataa aatgtcatta tggtgaatat gcatggtaat
     2521 tgagagctca tcaaatgacg ggatagtgat tgtatacaca ggaagcggaa aaggtaagac
     2581 aacggcttca ctaggagtgg ggctcagagc cataggtcac ggactcagag tttgtatggt
     2641 tcaattcatc aagggggaat ggcattatgg agagctcaat agtataaaaa aactagaacc
     2701 agattttgaa ttgatagttg caggtaaagg ttttatagga attattgatg atgatcatgc
     2761 ctttgaggaa catgtaaggg cggcaaaaac c
//
LOCUS       DASUMD010000251         2340 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_661031, whole genome shotgun sequence.
ACCESSION   DASUMD010000251 DASUMD010000000
VERSION     DASUMD010000251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2340)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2340)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2340
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_661031"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1054
                     /locus_tag="VFX26_06740"
     CDS             <1..1054
                     /locus_tag="VFX26_06740"
                     /inference="COORDINATES: protein motif:HMM:NF013275.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX5574210.1"
                     /translation="LLVEDSKTDPVESVHALKRLIDSDVKIVIGPVTSAAVMSVKDYA
                     NQHNVILISPSSTSTALSIADDNLFRFVPDDRNQAEFISNKMWNDGVRVVIPMWRSDT
                     FGNELVKGVKENFEKKGGLVMEGVQYHPHTGEFSSSLHRINFIMWNQYLKKLSNILEN
                     TTHQFDAQKVGVYLVSFDEVTPILIQSNEHPILQKVKWYGSDASAQNLQIIRNHDAAY
                     FAEMINFSNPLFQVNLNNSKAETLGEEIEKKLHGSSSLTYPILAYDTYWVTALSLEKI
                     IDNRTTDIDVESLKKIITGTAADYDGISGKIILNDAGDRINANYDIWSVVKSQKDFDD
                     YIWKQDITNIYTQSRK"
     gene            complement(1176..1502)
                     /locus_tag="VFX26_06745"
     CDS             complement(1176..1502)
                     /locus_tag="VFX26_06745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574211.1"
                     /translation="MKAKCGHVVEKKYVDVHDGLCRKCHSNFSFILDLVSKGGEDALV
                     QYWYAMILTKLSGVNKQESSCLIGHLVEFYQRQLIIVPSKEKYIRKMLYMLNSLLTPF
                     DVKNLR"
     gene            complement(1876..2181)
                     /locus_tag="VFX26_06750"
     CDS             complement(1876..2181)
                     /locus_tag="VFX26_06750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574212.1"
                     /translation="MRVRVYFCREPDVQSVILSSNQLSRQALNTIYDLVWECEFKNIL
                     NVGRIWLKFAQDEQNPFGIALRKKRSHSNIAPGDIIQVADDYYIVHDVGARKIQIKE"
BASE COUNT          781 a          425 c          380 g          754 t
ORIGIN      
        1 attattggtt gaagattcca agacagatcc agttgaaagc gttcatgcct taaaaagatt
       61 aattgattct gatgtgaaga tcgttattgg tccggtcaca agtgctgccg taatgtctgt
      121 aaaagattat gcaaatcaac ataatgttat tttgataagc ccttctagca cgtcgactgc
      181 attatcaata gcagatgata acctatttcg atttgttcct gatgatagga atcaggcaga
      241 atttatttca aataaaatgt ggaatgatgg ggttcgagtt gtaattccta tgtggcgcag
      301 tgacactttt gggaatgaat tagtcaaggg agtgaaagag aattttgaaa aaaaaggtgg
      361 acttgtcatg gaaggtgtac aatatcatcc gcatacggga gaattttctt caagtttaca
      421 tagaattaat ttcataatgt ggaatcaata tctcaaaaaa ttgagcaata ttctagaaaa
      481 cacaactcat caatttgatg cacagaaagt aggcgtttac ttggtctctt ttgatgaagt
      541 cacgccaata ttaattcaat ccaatgaaca tccaatctta caaaaagtaa aatggtacgg
      601 cagtgatgcg tctgcacaaa atttacagat aattagaaat cacgatgcag cttattttgc
      661 agaaatgata aatttctcca atccactttt tcaagtcaat ttaaacaata gtaaagcaga
      721 gactttgggg gaagaaatag aaaaaaaact acatggatcc tcttctttaa cttatccaat
      781 acttgcatac gatacttatt gggtaacagc actgagttta gaaaaaatta ttgataatag
      841 gacaaccgat attgatgtcg aatccctcaa aaaaataata accggtactg cagcagacta
      901 tgatgggatt tctggtaaga taatccttaa tgacgccggt gacagaataa atgcaaacta
      961 cgacatatgg tcagtagtaa aatcccaaaa agattttgat gattatattt ggaagcagga
     1021 tatcaccaat atctataccc aatcacgtaa ataactacca aaagtttcat aacaatatga
     1081 tcatcataat acaattatga ataataattg attttttcat aattggcatg attatgaatg
     1141 caatttaacc taaagtatca tgaaattatc aaatactatc ttaaattttt aacatcaaaa
     1201 ggtgtcaaca aagaatttaa catatacaac atcttcctaa tgtacttctc ctttgaagga
     1261 actattatta gttgtctttg ataaaattca accaagtgcc caatcagaca acttgattcc
     1321 tgtttattta ctccggatag tttggtaagg atcatagcat accagtactg cactagtgca
     1381 tcctcaccac cttttgatac tagatctaga ataaaggaaa aattagaatg acattttcta
     1441 cacagtccat catgtacatc gacgtatttt ttttcaacta catgaccaca ttttgctttc
     1501 atcacagtat ttcatattca ttgagagggc atattaatcc tctggttatt caggttttct
     1561 aagagaaata attacaaatg tatctcaact agttctatct catcattgca tgtcacgcat
     1621 ttaagatcgt tattgactta tgttgcaagt gattatcttt ggcgggttga atgtttatat
     1681 cataatgtga tcaaacagga gagtattcaa ctatgggcaa gatatcaagg tttcatggca
     1741 actccatttt acaaattatt gctataacta acggctcttt tgttttctag ctcgatatca
     1801 agtcctacat cggaaactta tgctgccttt tcatctgctg ccccggcagg tgtatacaaa
     1861 tatgatccca acctattatt cctttatctg tatcttccta gctccaacgt catgaactat
     1921 gtaatagtca tcagctacct gtataatgtc tccaggagct atattgctat gacttctttt
     1981 ttttctcagt gctatcccaa aaggattttg ctcatcttga gcaaatttaa gccaaatcct
     2041 acctacatta agaatgttct tgaattcaca ttcccaaacc aaatcatata ttgtattaag
     2101 cgcctgtcta ctcaattgat tactacttag tattacagat tgaacatcag gctctctgca
     2161 gaaataaact cttactctca tctaccttgc tcttacataa tcctgcgagc caaataattg
     2221 caacggttct gcttcgtgct ttatggaaaa attgacagaa atcgaaaatt ctcccatgta
     2281 aggctgaaat ctgcactatc gtattgtagg cccatgattc aatctgtgat actaggtcga
//
LOCUS       DASUMD010000252         4176 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_994536, whole genome shotgun sequence.
ACCESSION   DASUMD010000252 DASUMD010000000
VERSION     DASUMD010000252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4176)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4176)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4176
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_994536"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1019
                     /locus_tag="VFX26_06755"
     CDS             <1..1019
                     /locus_tag="VFX26_06755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEX5574213.1"
                     /translation="TAVLFWQNTMYSNAELVLTPRPLHMDDRMIMWCYSKPPGLYEKL
                     IEKIGKFDLTWYWGPLVSKKSSEWIEKATEYVLENEKPSLLFTYIPHLDYSFQKNGTS
                     YKDLENDLKFVDELVGRLIKKVSDIGILGDTQFIIFSEYGFTDVNSDISLNSIFREND
                     LLAVREIEQTEYLDLEYSKAFAMVDHQVAHIYVKENYTNQVRKILEAIKGVDMILDNN
                     LKQKMRINHPRSGDLIAISNKDKWFSYYWWFDPDKAPSFAKKVDIHRKPGYDPVELFF
                     DPTTKSIPLDGKLVRGSHGRLPTRGESANPVYVSNIKNILETKNGDNLRIVTVGQYLK
                     NLIQ"
     gene            1033..1869
                     /locus_tag="VFX26_06760"
     CDS             1033..1869
                     /locus_tag="VFX26_06760"
                     /inference="COORDINATES: protein motif:HMM:NF013429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase family
                     protein"
                     /protein_id="HEX5574214.1"
                     /translation="MSWRYSITLSSFKNLEPVQETLENLKNHGFDTVEVYGEPDLIDV
                     ESISHQLDSFSIDVSGITGMWGLSSSQSGFRNLVTTNNNSLKAAQNYVKKCVTLCHKL
                     GGKTFNICLFSEEPLISDSNHKYLSREEKRKLISTFIESLRELAKYARDYDIGLLIEP
                     LNRYSTPICTNSEDANYIVKLVDRENVGIMLDTFHMNIEEDSIYDAIVNSNTMLKHVH
                     VSDNNRKMPGFAHIDFNSVIGALKKIKYSKFLTFEPIFESTYYENDLKLGLQYLKNLS
                     KN"
     gene            1936..2955
                     /gene="egtD"
                     /locus_tag="VFX26_06765"
     CDS             1936..2955
                     /gene="egtD"
                     /locus_tag="VFX26_06765"
                     /EC_number="2.1.1.44"
                     /inference="COORDINATES: protein motif:HMM:TIGR03438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030745 - dimethylhistidine
                     N-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0052699 - ergothioneine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-histidine N(alpha)-methyltransferase"
                     /protein_id="HEX5574215.1"
                     /translation="MLIHNNKSSIINNELNNEFAKDVEKGLNGKQKHISPKFFYDKKG
                     SRLFEEICMQPEYYLNRIESQILKNSVDEILKIIGGQEISVIELGNGNSLKTRILLGP
                     FLTKLKIVTYFPIDVSLKMLKKSIKDLFREYANLQIYGICSDYVSGLVKINAFMKLKR
                     EIPNKKFIIFLGSSIGNFDPKDAIDFLHSIARYVLKEDLLLIGIDLEKDKSILDRAYN
                     DKNGITAKFNFNVLARINRELEGEFNISNFEHRSFYNIHKHRIEMHLESKLDQQVKIG
                     AIGKKFYFKKGEKIHTENSYKYSLRRLNKLVKKAGLQVIRNFTDPEEQYTLLLLKKVS
                     NATKS"
     gene            complement(2923..>4176)
                     /gene="egtB"
                     /locus_tag="VFX26_06770"
     CDS             complement(2923..>4176)
                     /gene="egtB"
                     /locus_tag="VFX26_06770"
                     /inference="COORDINATES: protein motif:HMM:TIGR03440.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0052699 - ergothioneine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ergothioneine biosynthesis protein EgtB"
                     /protein_id="HEX5574216.1"
                     /translation="SMEDAVMQSDPFGSTPNWHIAHVTWFFQKILEKYRQNVDANSIN
                     TDYLNSYYQRYSKILPKSDRGKFPRPKVSDTLKYRALIEEMFLKFLDNIEQKNSMTRS
                     LAYDIELANQHEMQHQELLVYDLQHYFQRFEDSLDNYEPKLMKTTKLDEIHGNEQGMV
                     RVSGGLYELGFSGNGFCYDNEIPEHRTYLNAYEIDKYPVTNKEFLEFVESGGYQDYKF
                     WLSDGWDLVKEKHWDAPLYWQQIDREWYKKDFRGLNKISPNEPVTNVSYYEADAYSKW
                     VGKRLPTEAEWEKAASWNEDLKKKTLYPWGDGLPSDLNSNLLESWKWAPSPIGSYPQG
                     RSHYGCHQMLGDVWEWTASEYVLYPGFRSKFSEYTDKWAINQKVLRGGSYATPRSQIR
                     NSYRNYFKPHERIPFSGFRCVRDLL"
BASE COUNT         1415 a          683 c          744 g         1334 t
ORIGIN      
        1 aaacagcagt cttgttctgg cagaatacaa tgtattctaa tgcagagcta gttctaactc
       61 cgcgtccact tcacatggat gatagaatga taatgtggtg ctatagcaaa ccgccaggcc
      121 tgtatgaaaa actaattgaa aaaataggaa aatttgattt gacctggtac tggggtcctc
      181 ttgtctctaa aaaatccagc gaatggatag agaaggcaac cgaatatgtt ctagaaaatg
      241 aaaaacctag tttattattt acatatatcc cacatttaga ttactctttc caaaaaaatg
      301 gaacatcgta caaagatcta gaaaatgacc taaagtttgt tgatgaattg gttggtagat
      361 tgataaagaa agtgtctgac attggcatac taggggacac acaatttatc atattctcag
      421 aatatggatt cacagatgtt aattctgaca tttcattaaa ttccatcttt agagaaaatg
      481 atctgcttgc tgtgagagaa atcgaacaga ctgaatattt ggaccttgaa tacagcaaag
      541 cctttgcaat ggtggatcac caggtagcac acatttatgt caaagaaaat tatacaaatc
      601 aagtaagaaa aatcttagaa gcaataaaag gtgtcgacat gatcctcgat aataatctga
      661 agcaaaaaat gagaattaat catccgagaa gtggcgactt aattgcaatt tcaaataaag
      721 ataaatggtt tagttattat tggtggtttg atccagataa ggctccaagt tttgccaaga
      781 aggtggatat tcatagaaaa ccgggttatg atcctgtgga attattcttt gatcccacta
      841 caaaatctat cccactggat ggtaaattag tgagaggttc gcatggcaga ttaccgactc
      901 gaggtgaatc tgctaatcca gtttatgtat cgaatattaa aaatatttta gaaacaaaaa
      961 atggagataa tttgagaatc gttactgttg gtcaatatct taagaattta atacaatgaa
     1021 gtaataatgg acatgtcctg gagatactca attactttat catcttttaa gaatttggaa
     1081 ccagtacaag aaactcttga aaacttgaaa aatcacggat ttgacacggt ggaggtttat
     1141 ggcgaacccg acttaattga tgtggagagt atatcacatc aacttgattc cttttcaata
     1201 gatgtatccg gcatcactgg catgtggggg ttaagtagta gtcagtctgg attccgtaat
     1261 ttggttacta ctaataataa ttcattgaaa gctgctcaga actatgtaaa aaaatgtgtt
     1321 actctttgcc ataagctggg tggtaagaca tttaatatct gtttatttag tgaagaacca
     1381 ctaatttcag atagtaatca caagtattta tcgcgagaag agaaaagaaa attaatttct
     1441 accttcatag agtcattgcg tgagctagcg aagtatgctc gtgattacga tattggcctc
     1501 ctcattgaac cgttgaatcg ctacagtact cctatttgca ccaattctga agatgcgaac
     1561 tatatcgtca aactggtaga ccgtgaaaat gtgggaatta tgttagatac tttccatatg
     1621 aacatagaag aagactcaat ttatgatgca atcgtaaatt ctaacacaat gttaaaacat
     1681 gttcatgtat cagataacaa taggaaaatg cctggtttcg cccatataga ttttaatagt
     1741 gtcataggag ctctcaagaa gataaaatat tcaaaatttc ttaccttcga accaatattt
     1801 gagagtactt attatgaaaa tgatttaaaa ctaggactgc agtatttaaa aaatctatct
     1861 aagaactgag aaattgaatt atatgaacgt aactaatatg atatgtgtat tttcaggagg
     1921 taaattttac tagagttgct aatacacaat aataaaagtt cgattataaa caatgaatta
     1981 aacaatgaat ttgcaaaaga tgttgaaaaa ggtttgaatg gtaaacaaaa gcatatttct
     2041 cctaaatttt tctatgataa aaaggggtcc aggttatttg aagaaatatg catgcaacct
     2101 gaatattatc ttaatcgaat tgaatcgcaa atattgaaaa attctgttga tgaaattttg
     2161 aagataatcg gaggacaaga aataagtgtt attgaattag gaaacgggaa ttccttgaaa
     2221 actcgaattt tattaggacc atttcttaca aagttgaaga ttgttaccta ttttcctata
     2281 gatgtctcat taaaaatgct gaaaaaatca attaaagact tattcagaga atatgcaaat
     2341 ttacaaattt atggcatttg ttcagactat gtttcaggac ttgtcaagat aaatgcattt
     2401 atgaaactca aaagggagat tccaaacaag aaattcataa tttttttggg atcaagtatt
     2461 ggaaatttcg atcccaaaga tgcaatcgat tttttgcact ctatagcgag atatgttcta
     2521 aaagaagatt tactattaat tggaatcgat ttggaaaagg ataaatcaat tttggacagg
     2581 gcgtataatg ataaaaatgg tataacagca aaattcaatt tcaacgtctt ggccagaatt
     2641 aacagagaac ttgagggaga gtttaacata tcaaactttg aacacagatc attctacaat
     2701 attcataaac acagaattga gatgcattta gaatcaaagt tggaccaaca ggtaaaaatt
     2761 ggagcaattg gaaaaaagtt ctattttaag aagggtgaaa aaatccatac agaaaattct
     2821 tacaaatatt cgttacgcag acttaataaa ctcgtaaaaa aggcgggtct tcaggtgatt
     2881 cggaatttca ctgatccgga ggaacagtac actctattat tgttaaagaa ggtctctaac
     2941 gcaacgaaat cctgaaaatg gaattctttc gtgtggtttg aaataatttc tataactgtt
     3001 tcgaatttgc gaccttggag tagcatatga acctccgcgc aatactttct gattaattgc
     3061 ccacttgtca gtatattctg aaaacttgga tctaaatcct ggatatagca catattcgga
     3121 ggctgtccat tcccatacat cccccaacat ctgatgacat ccatagtgac ttcttccttg
     3181 tggatatgac ccaattggag atggtgccca tttccatgat tctaataaat ttgaattaag
     3241 gtcggaaggt agtccatctc cccatggata caatgtcttt tttttcaaat cctcattcca
     3301 gctggctgct ttttcccatt ctgcctcagt tggtaatctc tttcctaccc actttgaata
     3361 tgcatccgct tcgtaataac tcacatttgt aactggctca tttggtgaaa ttttatttaa
     3421 ccccctgaaa tcttttttgt accactctcg atcaatttgt tgccagtata gtggcgcgtc
     3481 ccaatgtttt tcttttacaa gatcccatcc atcagataac cagaatttat aatcttgata
     3541 tcctcctgat tcgacaaatt caagaaattc cttatttgtt acaggatatt tgtcaatttc
     3601 atatgcattc agatacgttc tatgttctgg aatttcattg tcataacaaa agccatttcc
     3661 agaaaatcca agttcgtata atcctcctga taccctaacc attccctgct cgttaccatg
     3721 aatttcatcc aatttggtag tcttcattaa ttttggttca taattatcga gtgaatcttc
     3781 aaatctttgg aaataatgtt gaagatcgta cactaaaagc tcctggtgtt gcatttcatg
     3841 ttgatttgct agttcaatgt catatgctaa ggaacgtgtc atggagtttt tctgttctat
     3901 attgtccaga aattttagaa acatctcttc aattagagca cggtatttca gtgtgtcaga
     3961 aaccttaggt ctaggaaatt ttcccctatc ggatttgggt aatatcttac tataacgttg
     4021 ataatatgag ttgagatagt ctgtatttat tgaattagcg tcaacattct gtctgtattt
     4081 ttcaaggatt ttctgaaaaa accacgtcac atgggctata tgccaatttg gagtgctacc
     4141 aaatgggtca gattgcatta cagcatcttc cattga
//
LOCUS       DASUMD010000253         2534 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1436908, whole genome shotgun sequence.
ACCESSION   DASUMD010000253 DASUMD010000000
VERSION     DASUMD010000253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2534
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1436908"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1121)
                     /locus_tag="VFX26_06775"
     CDS             complement(<1..1121)
                     /locus_tag="VFX26_06775"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
                     /protein_id="HEX5574217.1"
                     /translation="MLDFSIIVNILEQMERTTSRLELTDYLVSLFKNTSSDLIDKIIY
                     LILGKIRPDYEGIEMGIAEKTIIRIISQISNTSSDEVYHKYREIGDLGSVAESILKNK
                     VQTTLFKEKVTIERIYLIFDKISKTTGKGSQEIKLRLLASLFNDSSPQECKYIIRFAL
                     ETLRLGVADSTIMDALALAYTSDKKNRKVLESAYNVSSDLGRVSRILANDGIKAVSEI
                     KIEIFIPIRPMLAERVQTSKEALEKVSGKGAVEFKLDGERVQIHRKDKKVEIFSRSLE
                     NITHYYPDVAEVSRTITLRNFIIEAEVVAINKFTDEFLPFQELMHRRRKYDIAKNVEN
                     YPISVNVFDVLWASGRDKTKLPYVNRRELLKDVITNSEDR"
     gene            1197..1598
                     /locus_tag="VFX26_06780"
     CDS             1197..1598
                     /locus_tag="VFX26_06780"
                     /inference="COORDINATES: protein motif:HMM:NF015268.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEX5574218.1"
                     /translation="MGNYKISPYFFHRIIKWVNIDVTMGGAKKKSIGSQEKTSKDTPT
                     ADEKTKKGEKKGPIKQKQKSLIVIEEPQGLKTIKGMKPITSQGLARSMGVKISVANSF
                     LRSLESKGILRPIGGYSGHRIYELGPTEATQ"
     gene            complement(1888..>2534)
                     /locus_tag="VFX26_06785"
     CDS             complement(1888..>2534)
                     /locus_tag="VFX26_06785"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF036996.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="asparaginase domain-containing protein"
                     /protein_id="HEX5574219.1"
                     /translation="AARSRFSGVFVAMHHSISDDVIACHIGTRVRKNHTSRRDAFHSI
                     DVYPFSLIKKDQIEISKQYVDLKFQVRNKNLENMIVRPSFADKVSLLKFYPGFDGKMI
                     DYCVERGHKAIILEGTGLGHINKECFSQIKNAVSKGIFVFMTSQCIWGRTSLTVYDTG
                     RDLLNIGVVPLSNTTSETALVKAMWCLGNFEEKDVIKTMTTNIANEYTDRIIAD"
BASE COUNT          791 a          478 c          410 g          855 t
ORIGIN      
        1 cgatcctctg aattagtaat aacatctttc aataactccc ttctatttac ataaggtagt
       61 tttgttttat ctctacctga agcccagaga acatcaaaaa catttacaga aataggataa
      121 ttttctacat tcttcgctat atcatatttc ctacgtctgt gcatgagttc ttgaaatgga
      181 agaaattcgt ctgtaaactt attgattgca actacttcag cctcaattat gaaatttctc
      241 agagtaatgg tccttgaaac ttcagcaaca tccggataat aatgtgtgat gttttctaag
      301 ctccttgaaa atatctccac cttcttgtct tttctatgta tttggaccct ctcaccatcg
      361 agcttaaatt ctactgcgcc cttaccggac accttctcga gagcctcttt acttgtttga
      421 actctttctg caagcattgg tcttattggt ataaatattt caatcttaat ttcagaaaca
      481 gcttttattc catcatttgc caatatcctg gaaactcttc ccaagtcact tgagacatta
      541 taagcacttt ctaaaacttt tctatttttt ttatcggagg tgtatgctaa agctaaagca
      601 tccattattg tactatcagc gactccaagt cttagagttt cgagtgcaaa tctgataata
      661 tatttacact cttgcggaga tgaatcatta aaaagactcg ctaacaatct taattttatt
      721 tcctgtgatc ccttcccagt agttttggat attttgtcaa aaattaaata aatcctttca
      781 atagtaacct tttctttgaa aagtgtggtc tgtactttat tcttcaaaat tgattctgct
      841 acgcttccga ggtctcctat ttcgcgatat ttatgataaa cctcatcact tgaagtattt
      901 gaaatctgtg atataattcg aattattgtt ttttcagcga ttcccatttc aattccttcg
      961 taatcaggtc taatttttcc cagaataaga taaattattt tatcaatgag atcagaggag
     1021 gtatttttga aaagactaac caaataatct gtaagttcca gtctacttgt tgttcgttcc
     1081 atttgctcta aaatattgac aataatggaa aaatccaaca ttatttgtta cgggagggtg
     1141 ttttaaaata ttttaaacta aatttgcaaa agaatcagat ttgtttgaag gaaaatatgg
     1201 gtaattacaa aatttcaccg tactttttcc ataggattat aaaatgggtt aacattgacg
     1261 ttactatggg cggagctaag aaaaaatcaa tagggagtca agaaaaaaca tcaaaggata
     1321 ctccaactgc cgatgaaaag acgaagaagg gagaaaagaa gggcccaatt aaacaaaaac
     1381 aaaaatcatt aatagtcata gaggaacctc aaggtttaaa gaccattaaa ggtatgaaac
     1441 caattacgtc ccaaggactg gccaggtcaa tgggtgtaaa gatttccgta gcaaattcat
     1501 ttctacgttc acttgaatct aagggtattt taagaccaat aggtggatat agtgggcata
     1561 ggatctatga acttggacct acggaagcca cccaataaat ttgaattatc tgatttgctc
     1621 atagcagata tcataagagc tgactagtta tccaaatagc atgtagggct aatttcttat
     1681 cgctttccaa aatcaagctg tgcctacgta tgaacttagc attatttagc atacctattg
     1741 aatttatgtc ggtaagactc agacaaattt cattgctttg gtaaaaggca atgtttcttg
     1801 ttcatatgcg aaaaggttcc agcctcctac cggtgttagt tttccggcct gttgtttagt
     1861 gagtagaacg caagagcaaa tctatattca atctgcaatg attcgatcag tgtactcatt
     1921 tgcaatatta gttgtcattg ttttaataac atctttttct tcaaagtttc ccaaacacca
     1981 cattgcttta accaatgcgg tttctgaagt tgtattagaa agagggacta cacctatatt
     2041 caaaagatct cttccggtat catagactgt gagcgaagtt ctaccccaga tgcattggga
     2101 ggtcataaat acaaagattc ctttactaac tgcattcttt atttgagaaa agcactcctt
     2161 atttatgtga cctaacccag taccctctaa gattattgct ttatgtcccc tctccacaca
     2221 ataatctatc attttaccat caaaaccagg atagaatttt aataacgaaa ctttatccgc
     2281 gaaacttggt cttacaatca tgttttcaag atttttgttc cttacttgaa atttcaagtc
     2341 cacatactgc ttagatatct ctatttgatc tttcttgatt agtgaaaaag ggtacacgtc
     2401 tattgagtga aatgcatctc gtctacttgt gtgatttttt ctaaccctgg tacctatatg
     2461 gcatgctatg acatcatctg agattgaatg atgcatggca acaaagacgc ccgagaatct
     2521 agatctagca gcaa
//
LOCUS       DASUMD010000254         2807 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U1562
            k141_1215355, whole genome shotgun sequence.
ACCESSION   DASUMD010000254 DASUMD010000000
VERSION     DASUMD010000254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37961704
            Sequence Read Archive: SRR25158529
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2807)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2807)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (25-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/11/2024 07:55:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,360
            CDSs (total)                      :: 1,340
            Genes (coding)                    :: 1,336
            CDSs (with protein)               :: 1,336
            Genes (RNA)                       :: 20
            rRNAs                             :: 1 (23S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 19
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 4
            CDSs (without protein)            :: 4
            Pseudo Genes (ambiguous residues) :: 0 of 4
            Pseudo Genes (frameshifted)       :: 0 of 4
            Pseudo Genes (incomplete)         :: 2 of 4
            Pseudo Genes (internal stop)      :: 2 of 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2807
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1215355"
                     /isolate="SMAG_U1562"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="China"
                     /lat_lon="37.52527778 N 121.3861111 E"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..487)
                     /locus_tag="VFX26_06790"
     CDS             complement(<1..487)
                     /locus_tag="VFX26_06790"
                     /EC_number="3.5.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF016115.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016812 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in cyclic amides
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HEX5574220.1"
                     /translation="MILDLTREISADTKVFPGSPLPKFITWTKMDVHNYYSEVIFMST
                     HTGTHMDAPSHFVNDVSSIDKISVNRFISNALLIKIEKNSDELITAGEIEASKVKILE
                     GDTIVFSTLWENEVDKDYFFSHNPGLSEGAAKYLIDKKVNAVCIDSPSIDRGSDSNFP
                     VH"
     gene            complement(811..1137)
                     /locus_tag="VFX26_06795"
     CDS             complement(811..1137)
                     /locus_tag="VFX26_06795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX5574221.1"
                     /translation="MSACNIHKNFFDENCPDCKLEYAELKGTTQSKPQEDEKLEKRAD
                     ESRSKKSYKEFPEERAKKLYEELLIQFMRTKSINEAEAARRARQIIRKQCAIRGIKVW
                     NWLKTT"
     gene            complement(1219..2505)
                     /locus_tag="VFX26_06800"
     CDS             complement(1219..2505)
                     /locus_tag="VFX26_06800"
                     /inference="COORDINATES: protein motif:HMM:NF014218.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytosine permease"
                     /protein_id="HEX5574222.1"
                     /translation="MVPNLPQWGINPVPTKHRILGGFDYFILWSSLGVGLLVFSAGSF
                     LSETPFYHALFAIIIGSIAGSVLLSMAGKIGSDHAVPSLIGIRPAFGLYGSYLAAVLN
                     IIQLIGWTTFEILILSKAAEQLTNMHVTFVWNIIFGVIIALLGIFGPLFLVKQWLSKF
                     AIWIVYASSAIILVTLLFQNLPNVMSGEGKDASFFVALDIVIAMPISWMPLVSDYNRF
                     AKTSKGAFIGTLIGFSITNIIFYVGGLLFGVGDISSIIISIQAILFGFILLVMIVDEI
                     DNAFADIYSAAISSQNIFHNLNQRHLIIGFSIVSTILAIFVSIEGYEQFLFLIGALFI
                     PLFGVLLTDYFVIKRGKYQNDMMYGNKIIKIGYPAIIAWAIGAVLYYLLSQLSPIYLA
                     QLPTIGSTIPSLIVSSLLYLLITKLDLKFKVTKTAI"
BASE COUNT          994 a          501 c          445 g          867 t
ORIGIN      
        1 tatgtacagg aaaattacta tctgaacccc tgtcgatgct gggtgagtct atacatacag
       61 cgtttacttt tttatctata agatatttcg cagcaccttc tgaaagacca ggattatgac
      121 taaaaaaata atccttgtct acctcgttct cccacaaagt agaaaaaaca atagtgtcgc
      181 cctccaatat ctttaccttg gatgcttcta tttcacctgc agttattaat tcgtcggaat
      241 tcttctctat tttaataaga agagcatttg aaatgaatct gttaactgat attttatcaa
      301 ttgatgaaac atcattcaca aaatgagacg gagcatccat gtgagtgcct gtatgagtac
      361 tcatgaagat tacttctgaa taatagttat gcacatccat tttagtccat gtaataaatt
      421 taggcaatgg cgaacctgga aagactttgg tgtcagcact tatttctctg gttaagtcca
      481 gtatcatcaa tgcaatacct agttatgatt tgttcatatc tcttttgcct ttgcgggcgg
      541 atctgactat tccatttaga atgatgatac ttaaaaatcc gaaagaacct atcaacacat
      601 acgagatacc tatatgtact atttcggcaa attcatctat tgtcatttct aatgcccttt
      661 gaaattaaca taagatatga aataaacaaa taaaatattt gctatccatc agtaattttc
      721 tatcacgtgg tcggcaatta ttatcagata tagatggata ataaataatt tacaccaatc
      781 atgcaattcc aacatatgct gctaattgta ttatgttgtt ttcagccagt tccaaacttt
      841 aattcctcta attgcacatt gttttctaat aatttgcctt gctcttctag ctgcttcggc
      901 ttcgttgatt gattttgttc tcataaattg tatcaacaat tcttcataaa gcttttttgc
      961 tctctcttcc ggaaattctt tgtatgattt tttactcctt gattcatctg ctcttttttc
     1021 taatttctca tcttcttgag gtttagattg agttgtacct tttaattctg catattctaa
     1081 tttacaatca ggacaatttt catcaaaaaa attcttgtga atattacatg cagacaatta
     1141 ccaaataata atcaaagtta gatttaagga aagtgtatat gaaaaatatt gactgaacaa
     1201 atctaattaa ggcaaatatc atatcgcagt tttggtgacc ttaaatttta gatcaagttt
     1261 agtgattagc agatataata gtgaggagac tatcaaactt ggaatcgtgg aacctattgt
     1321 tggtagctgt gctaaataaa tcggcgaaag ttgagaaagc aaataatata acacagctcc
     1381 aatagcccac gcaatgatag caggatatcc tatcttgatt atcttgttac catacatcat
     1441 atcattctga tatttaccac gcttaattac gaaatagtcg gttaacagca ctccaaatag
     1501 gggaataaat aaagctccta tcaagaacaa aaattgttca taaccttcaa tcgatacaaa
     1561 aatagccaaa atagtactta caatcgagaa tcctataatc agatgtcgtt gatttagatt
     1621 atggaaaata ttttgggaag aaatcgctgc ggagtatata tctgcaaatg cattatctat
     1681 ctcgtcgaca atcataacta gcagaataaa accaaataga attgcttgaa tagatatgat
     1741 gatggatgaa atatctccaa ctccaaataa taatcctcca acataaaaaa tgatatttgt
     1801 aattgaaaat ccaattaaag tgcctataaa ggcaccctta ctagtctttg caaatctgtt
     1861 ataatctgaa acaagaggca tccaggagat aggcatagca atcacaatat ctaacgcaac
     1921 aaagaatgac gcatctttac cttctccgga catcacattt ggaagattct gaaatagtaa
     1981 agtaactaag attattgctg aagaagcgta aactatccat attgcaaact ttgataacca
     2041 ctgttttacc aagaacaaag gcccaaatat accaagcaag gcaataatta ctccaaagat
     2101 aatgttccat acaaatgtaa catgcatatt tgttaattgt tcagctgcct tagaaagtat
     2161 caaaatttca aatgtggtcc agccaataag ttgtattata tttagtacag cggcaagata
     2221 tgacccgtac aatccaaaag ccggtcgtat tccgataaga gatggtactg catgatcgct
     2281 tcctattttc cctgccattg acagcaagac ggaacccgca attgaaccga ttatgattgc
     2341 aaataatgca tggtaaaaag gagtctcgga taaaaaggat cccgcagaaa aaactagtaa
     2401 gccaacacca agactagacc acaaaatgaa atagtcaaaa cctccaagaa ttctatgttt
     2461 tgtaggaaca ggattgattc cccattgtgg cagattaggg accatatggt gttgattaat
     2521 aattttttat aaatataaat taatctcact ttgaatcaga gataaaagat tcactacaaa
     2581 ctgttgacaa tccatttgaa aatgaatcta cgttcctaag tacagaaagc agaagagaac
     2641 aaagaagaaa aggaaagata cctagaagca aacgtcttaa aacagaagaa catgaagact
     2701 ctgaaattca aacagaaata cgcagacatg gttcccataa cgtcaggatt attcagtaat
     2761 taatgatgat aatgattagg ttgatggaac aatgacagaa ggaaatc
//
